Citrus Sinensis ID: 019244
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 344 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LRR9 | 367 | Peroxisomal (S)-2-hydroxy | yes | no | 0.988 | 0.926 | 0.839 | 1e-173 | |
| P05414 | 369 | Peroxisomal (S)-2-hydroxy | N/A | no | 0.994 | 0.926 | 0.817 | 1e-170 | |
| Q9LRS0 | 367 | Peroxisomal (S)-2-hydroxy | yes | no | 0.988 | 0.926 | 0.815 | 1e-168 | |
| O49506 | 368 | Peroxisomal (S)-2-hydroxy | no | no | 0.965 | 0.902 | 0.793 | 1e-165 | |
| Q10CE4 | 369 | Peroxisomal (S)-2-hydroxy | yes | no | 0.997 | 0.929 | 0.789 | 1e-163 | |
| B8AKX6 | 369 | Peroxisomal (S)-2-hydroxy | N/A | no | 0.997 | 0.929 | 0.789 | 1e-163 | |
| Q6YT73 | 369 | Peroxisomal (S)-2-hydroxy | no | no | 0.970 | 0.905 | 0.797 | 1e-161 | |
| B8B7C5 | 369 | Peroxisomal (S)-2-hydroxy | N/A | no | 0.970 | 0.905 | 0.797 | 1e-161 | |
| Q7FAS1 | 367 | Peroxisomal (S)-2-hydroxy | no | no | 0.970 | 0.910 | 0.755 | 1e-153 | |
| B8AUI3 | 367 | Peroxisomal (S)-2-hydroxy | N/A | no | 0.970 | 0.910 | 0.755 | 1e-153 |
| >sp|Q9LRR9|GLO1_ARATH Peroxisomal (S)-2-hydroxy-acid oxidase GLO1 OS=Arabidopsis thaliana GN=GLO1 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 607 bits (1564), Expect = e-173, Method: Compositional matrix adjust.
Identities = 309/368 (83%), Positives = 328/368 (89%), Gaps = 28/368 (7%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITNV EY+AIAK+KLPKMV+DYYASGAEDQWTLQENRNAF+RILFRPRILIDVSKIDM
Sbjct: 2 EITNVTEYDAIAKQKLPKMVYDYYASGAEDQWTLQENRNAFARILFRPRILIDVSKIDMT 61
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM------------------ 104
TTVLGFKISMPIM+APTAMQKMAHP+GEYATARAASAAGTIM
Sbjct: 62 TTVLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 121
Query: 105 --------VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 156
VYK+RNVV QLVRRAERAGFKAIALTVDTPRLGRRE+DIKNRFTLPP LTLK
Sbjct: 122 GIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLK 181
Query: 157 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIA 216
NF+GLDLGKMDEANDSGLA+YVAGQIDR+LSWKDV+WLQTITKLPILVKGVLT EDARIA
Sbjct: 182 NFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDVQWLQTITKLPILVKGVLTGEDARIA 241
Query: 217 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 276
+QAGAAGIIVSNHGARQLDYVPATI ALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG
Sbjct: 242 IQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 301
Query: 277 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDAS 336
ASGIFIGRPVV+SLAAEGE GVR+VL+MLR+EFEL MALSGCRSLKEI+R+HI TEWD
Sbjct: 302 ASGIFIGRPVVFSLAAEGEAGVRKVLQMLRDEFELTMALSGCRSLKEISRNHITTEWDT- 360
Query: 337 LPRPVPRL 344
PRP RL
Sbjct: 361 -PRPSARL 367
|
Arabidopsis thaliana (taxid: 3702) EC: 1EC: .EC: 1EC: .EC: 3EC: .EC: 1EC: 5 |
| >sp|P05414|GOX_SPIOL Peroxisomal (S)-2-hydroxy-acid oxidase OS=Spinacia oleracea PE=1 SV=1 | Back alignment and function description |
|---|
Score = 596 bits (1537), Expect = e-170, Method: Compositional matrix adjust.
Identities = 301/368 (81%), Positives = 322/368 (87%), Gaps = 26/368 (7%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITNV EYEAIAK+KLPKMV+DYYASGAEDQWTL ENRNAFSRILFRPRILIDV+ IDM
Sbjct: 2 EITNVNEYEAIAKQKLPKMVYDYYASGAEDQWTLAENRNAFSRILFRPRILIDVTNIDMT 61
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM------------------ 104
TT+LGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM
Sbjct: 62 TTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 121
Query: 105 --------VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 156
VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRF LPPFLTLK
Sbjct: 122 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLK 181
Query: 157 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIA 216
NF+G+DLGKMD+ANDSGL++YVAGQIDRSLSWKDV WLQTIT LPILVKGV+TAEDAR+A
Sbjct: 182 NFEGIDLGKMDKANDSGLSSYVAGQIDRSLSWKDVAWLQTITSLPILVKGVITAEDARLA 241
Query: 217 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 276
VQ GAAGIIVSNHGARQLDYVPATIMALEEVVKA QGRIPVFLDGGVRRGTDVFKALALG
Sbjct: 242 VQHGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFLDGGVRRGTDVFKALALG 301
Query: 277 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDAS 336
A+G+FIGRPVV+SLAAEGE GV++VL+M+R+EFEL MALSGCRSLKEI+R HI +WD
Sbjct: 302 AAGVFIGRPVVFSLAAEGEAGVKKVLQMMRDEFELTMALSGCRSLKEISRSHIAADWDGP 361
Query: 337 LPRPVPRL 344
R V RL
Sbjct: 362 SSRAVARL 369
|
Spinacia oleracea (taxid: 3562) EC: 1 EC: . EC: 1 EC: . EC: 3 EC: . EC: 1 EC: 5 |
| >sp|Q9LRS0|GLO2_ARATH Peroxisomal (S)-2-hydroxy-acid oxidase GLO2 OS=Arabidopsis thaliana GN=GLO2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 592 bits (1526), Expect = e-168, Method: Compositional matrix adjust.
Identities = 300/368 (81%), Positives = 325/368 (88%), Gaps = 28/368 (7%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITNV EY+AIAK KLPKMV+DYYASGAEDQWTLQENRNAF+RILFRPRILIDV+KIDM
Sbjct: 2 EITNVTEYDAIAKAKLPKMVYDYYASGAEDQWTLQENRNAFARILFRPRILIDVNKIDMA 61
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM------------------ 104
TTVLGFKISMPIM+APTA QKMAHP+GEYATARAASAAGTIM
Sbjct: 62 TTVLGFKISMPIMVAPTAFQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 121
Query: 105 --------VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 156
VYK+R VV QLVRRAE+AGFKAIALTVDTPRLGRRE+DIKNRFTLPP LTLK
Sbjct: 122 GIRFFQLYVYKNRKVVEQLVRRAEKAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLK 181
Query: 157 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIA 216
NF+GLDLGKMDEANDSGLA+YVAGQIDR+LSWKD++WLQTIT +PILVKGVLT EDARIA
Sbjct: 182 NFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDIQWLQTITNMPILVKGVLTGEDARIA 241
Query: 217 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 276
+QAGAAGIIVSNHGARQLDYVPATI ALEEVVKATQGR+PVFLDGGVRRGTDVFKALALG
Sbjct: 242 IQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRVPVFLDGGVRRGTDVFKALALG 301
Query: 277 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDAS 336
ASGIFIGRPVV++LAAEGE GV++VL+MLR+EFEL MALSGCRSL EITR+HIVTEWD
Sbjct: 302 ASGIFIGRPVVFALAAEGEAGVKKVLQMLRDEFELTMALSGCRSLSEITRNHIVTEWDT- 360
Query: 337 LPRPVPRL 344
PR +PRL
Sbjct: 361 -PRHLPRL 367
|
Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: . EC: 3 EC: . EC: 1 EC: 5 |
| >sp|O49506|GLO5_ARATH Peroxisomal (S)-2-hydroxy-acid oxidase GLO5 OS=Arabidopsis thaliana GN=GLO5 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 582 bits (1501), Expect = e-165, Method: Compositional matrix adjust.
Identities = 284/358 (79%), Positives = 314/358 (87%), Gaps = 26/358 (7%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITNVMEYE IAKEKLPKMV+DYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID++
Sbjct: 2 EITNVMEYEKIAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDVS 61
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM------------------ 104
TTVLGF ISMPIMIAPTAMQKMAHP+GE ATARA SAAGTIM
Sbjct: 62 TTVLGFNISMPIMIAPTAMQKMAHPDGELATARATSAAGTIMTLSSWATCSVEEVASTGP 121
Query: 105 --------VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 156
VYKDRNVV QLV+RAE AGFKAIALTVDTPRLGRRE+DIKNRF LP LTLK
Sbjct: 122 GIRFFQLYVYKDRNVVIQLVKRAEEAGFKAIALTVDTPRLGRRESDIKNRFALPRGLTLK 181
Query: 157 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIA 216
NF+GLDLGK+D+ NDSGLA+YVAGQ+D+SLSWKD+KWLQ+IT LPILVKGV+TAEDARIA
Sbjct: 182 NFEGLDLGKIDKTNDSGLASYVAGQVDQSLSWKDIKWLQSITSLPILVKGVITAEDARIA 241
Query: 217 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 276
V+ GAAGIIVSNHGARQLDYVPATI+ALEEVVKA +GRIPVFLDGGVRRGTDVFKALALG
Sbjct: 242 VEYGAAGIIVSNHGARQLDYVPATIVALEEVVKAVEGRIPVFLDGGVRRGTDVFKALALG 301
Query: 277 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 334
ASG+F+GRP ++SLAA+GE GVR++L+MLR+EFEL MALSGCRSL+EI+R HI T+WD
Sbjct: 302 ASGVFVGRPSLFSLAADGEAGVRKMLQMLRDEFELTMALSGCRSLREISRTHIKTDWD 359
|
Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: . EC: 3 EC: . EC: 1 EC: 5 |
| >sp|Q10CE4|GLO1_ORYSJ Peroxisomal (S)-2-hydroxy-acid oxidase GLO1 OS=Oryza sativa subsp. japonica GN=GLO1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 574 bits (1479), Expect = e-163, Method: Compositional matrix adjust.
Identities = 292/370 (78%), Positives = 320/370 (86%), Gaps = 27/370 (7%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
MGEITNVMEY+AIAK+KLPKM++DYYASGAED+WTL+ENR AFSRILFRPRILIDVSKID
Sbjct: 1 MGEITNVMEYQAIAKQKLPKMIYDYYASGAEDEWTLKENREAFSRILFRPRILIDVSKID 60
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM---------------- 104
M+ TVLGFKISMPIMIAP+AMQKMAHP+GEYATARAASAAGTIM
Sbjct: 61 MSATVLGFKISMPIMIAPSAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVAST 120
Query: 105 ----------VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT 154
VYKDRNVV QLVRRAERAGFKAIALTVDTPRLGRREADIKNRF LPP+LT
Sbjct: 121 GPGIRFFQLYVYKDRNVVEQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPYLT 180
Query: 155 LKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDAR 214
LKNF+GLDL +MD++NDSGLA+YVAGQIDR+LSWKDVKWLQ+IT LPILVKGV+TAEDAR
Sbjct: 181 LKNFEGLDLAEMDKSNDSGLASYVAGQIDRTLSWKDVKWLQSITSLPILVKGVITAEDAR 240
Query: 215 IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 274
+AV +GAAGIIVSNHGARQLDYVPATI ALEEVV A GRIPV+LDGGVRRGTDVFKALA
Sbjct: 241 LAVHSGAAGIIVSNHGARQLDYVPATISALEEVVTAAAGRIPVYLDGGVRRGTDVFKALA 300
Query: 275 LGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 334
LGA+G+FIGRPVV++LAAEGE GVR VL M+REEFEL MALSGC SL +ITR HI T+ D
Sbjct: 301 LGAAGVFIGRPVVFALAAEGEAGVRNVLRMMREEFELTMALSGCTSLADITRAHIYTDAD 360
Query: 335 ASLPRPVPRL 344
L RP PRL
Sbjct: 361 -RLARPFPRL 369
|
Photorespiratory enzyme that can exert a strong regulation over photosynthesis, possibly through a feed-back inhibition on Rubisco activase. Not required for oxalate accumulation. Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 1 EC: . EC: 3 EC: . EC: 1 EC: 5 |
| >sp|B8AKX6|GLO1_ORYSI Peroxisomal (S)-2-hydroxy-acid oxidase GLO1 OS=Oryza sativa subsp. indica GN=GLO1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 574 bits (1479), Expect = e-163, Method: Compositional matrix adjust.
Identities = 292/370 (78%), Positives = 320/370 (86%), Gaps = 27/370 (7%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
MGEITNVMEY+AIAK+KLPKM++DYYASGAED+WTL+ENR AFSRILFRPRILIDVSKID
Sbjct: 1 MGEITNVMEYQAIAKQKLPKMIYDYYASGAEDEWTLKENREAFSRILFRPRILIDVSKID 60
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM---------------- 104
M+ TVLGFKISMPIMIAP+AMQKMAHP+GEYATARAASAAGTIM
Sbjct: 61 MSATVLGFKISMPIMIAPSAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVAST 120
Query: 105 ----------VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT 154
VYKDRNVV QLVRRAERAGFKAIALTVDTPRLGRREADIKNRF LPP+LT
Sbjct: 121 GPGIRFFQLYVYKDRNVVEQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPYLT 180
Query: 155 LKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDAR 214
LKNF+GLDL +MD++NDSGLA+YVAGQIDR+LSWKDVKWLQ+IT LPILVKGV+TAEDAR
Sbjct: 181 LKNFEGLDLAEMDKSNDSGLASYVAGQIDRTLSWKDVKWLQSITSLPILVKGVITAEDAR 240
Query: 215 IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 274
+AV +GAAGIIVSNHGARQLDYVPATI ALEEVV A GRIPV+LDGGVRRGTDVFKALA
Sbjct: 241 LAVHSGAAGIIVSNHGARQLDYVPATISALEEVVTAAAGRIPVYLDGGVRRGTDVFKALA 300
Query: 275 LGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 334
LGA+G+FIGRPVV++LAAEGE GVR VL M+REEFEL MALSGC SL +ITR HI T+ D
Sbjct: 301 LGAAGVFIGRPVVFALAAEGEAGVRNVLRMMREEFELTMALSGCTSLADITRAHIYTDAD 360
Query: 335 ASLPRPVPRL 344
L RP PRL
Sbjct: 361 -RLARPFPRL 369
|
Photorespiratory enzyme that can exert a strong regulation over photosynthesis, possibly through a feed-back inhibition on Rubisco activase. Not required for oxalate accumulation. Oryza sativa subsp. indica (taxid: 39946) EC: 1 EC: . EC: 1 EC: . EC: 3 EC: . EC: 1 EC: 5 |
| >sp|Q6YT73|GLO5_ORYSJ Peroxisomal (S)-2-hydroxy-acid oxidase GLO5 OS=Oryza sativa subsp. japonica GN=GLO5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 569 bits (1466), Expect = e-161, Method: Compositional matrix adjust.
Identities = 287/360 (79%), Positives = 316/360 (87%), Gaps = 26/360 (7%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
MGEITNV EY+AIAK+KLPKM++DYYASGAED+WTLQENR AF+RILFRPRILIDVSKID
Sbjct: 1 MGEITNVTEYQAIAKQKLPKMIYDYYASGAEDEWTLQENREAFARILFRPRILIDVSKID 60
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM---------------- 104
M TTVLGFKISMPIMIAP+AMQKMAHP+GEYATARAASAAGTIM
Sbjct: 61 MATTVLGFKISMPIMIAPSAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVAST 120
Query: 105 ----------VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT 154
VYKDR VV QLVRRAERAGFKAIALTVDTPRLGRREADIKNRF LPPFLT
Sbjct: 121 GPGIRFFQLYVYKDRRVVEQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLT 180
Query: 155 LKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDAR 214
LKNF+GL+LGKMD+A+DSGLA+YVAGQIDR+LSWKDVKWLQTIT LPILVKGV+TAED R
Sbjct: 181 LKNFEGLELGKMDQASDSGLASYVAGQIDRTLSWKDVKWLQTITTLPILVKGVITAEDTR 240
Query: 215 IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 274
+AV+ GAAGIIVSNHGARQLDYVPATI ALEEVVKA +G++PVFLDGGVRRGTDVFKALA
Sbjct: 241 LAVENGAAGIIVSNHGARQLDYVPATISALEEVVKAARGQLPVFLDGGVRRGTDVFKALA 300
Query: 275 LGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 334
LGA+G+FIGRPVV+SLAA GE GVR VL+MLR+EFEL MALSGC SL +ITR+H++TE D
Sbjct: 301 LGAAGVFIGRPVVFSLAAAGEAGVRNVLQMLRDEFELTMALSGCTSLADITRNHVITEAD 360
|
Photorespiratory enzyme that can exert a strong regulation over photosynthesis, possibly through a feed-back inhibition on Rubisco activase. Not required for oxalate accumulation. Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 1 EC: . EC: 3 EC: . EC: 1 EC: 5 |
| >sp|B8B7C5|GLO5_ORYSI Peroxisomal (S)-2-hydroxy-acid oxidase GLO5 OS=Oryza sativa subsp. indica GN=GLO5 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 569 bits (1466), Expect = e-161, Method: Compositional matrix adjust.
Identities = 287/360 (79%), Positives = 316/360 (87%), Gaps = 26/360 (7%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
MGEITNV EY+AIAK+KLPKM++DYYASGAED+WTLQENR AF+RILFRPRILIDVSKID
Sbjct: 1 MGEITNVTEYQAIAKQKLPKMIYDYYASGAEDEWTLQENREAFARILFRPRILIDVSKID 60
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM---------------- 104
M TTVLGFKISMPIMIAP+AMQKMAHP+GEYATARAASAAGTIM
Sbjct: 61 MATTVLGFKISMPIMIAPSAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVAST 120
Query: 105 ----------VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT 154
VYKDR VV QLVRRAERAGFKAIALTVDTPRLGRREADIKNRF LPPFLT
Sbjct: 121 GPGIRFFQLYVYKDRRVVEQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLT 180
Query: 155 LKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDAR 214
LKNF+GL+LGKMD+A+DSGLA+YVAGQIDR+LSWKDVKWLQTIT LPILVKGV+TAED R
Sbjct: 181 LKNFEGLELGKMDQASDSGLASYVAGQIDRTLSWKDVKWLQTITTLPILVKGVITAEDTR 240
Query: 215 IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 274
+AV+ GAAGIIVSNHGARQLDYVPATI ALEEVVKA +G++PVFLDGGVRRGTDVFKALA
Sbjct: 241 LAVENGAAGIIVSNHGARQLDYVPATISALEEVVKAARGQLPVFLDGGVRRGTDVFKALA 300
Query: 275 LGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 334
LGA+G+FIGRPVV+SLAA GE GVR VL+MLR+EFEL MALSGC SL +ITR+H++TE D
Sbjct: 301 LGAAGVFIGRPVVFSLAAAGEAGVRNVLQMLRDEFELTMALSGCTSLADITRNHVITEAD 360
|
Photorespiratory enzyme that can exert a strong regulation over photosynthesis, possibly through a feed-back inhibition on Rubisco activase. Not required for oxalate accumulation. Oryza sativa subsp. indica (taxid: 39946) EC: 1 EC: . EC: 1 EC: . EC: 3 EC: . EC: 1 EC: 5 |
| >sp|Q7FAS1|GLO3_ORYSJ Peroxisomal (S)-2-hydroxy-acid oxidase GLO3 OS=Oryza sativa subsp. japonica GN=GLO3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 542 bits (1397), Expect = e-153, Method: Compositional matrix adjust.
Identities = 272/360 (75%), Positives = 303/360 (84%), Gaps = 26/360 (7%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
M ITNV EYE +AK+KLPKM++DYYASGAEDQWTL+ENR AFSRILFRPRILIDVS+I+
Sbjct: 1 MELITNVSEYEQLAKQKLPKMIYDYYASGAEDQWTLKENREAFSRILFRPRILIDVSRIN 60
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM---------------- 104
M T VLGF ISMPIMIAP+AMQKMAHPEGE ATARAASAAGTIM
Sbjct: 61 MATNVLGFNISMPIMIAPSAMQKMAHPEGELATARAASAAGTIMTLSSWSTSSVEEVNSA 120
Query: 105 ----------VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT 154
VYKDRN+V QLVRRAE AGFKAIALTVDTPRLGRREADIKNRF LPP L
Sbjct: 121 APGIRFFQLYVYKDRNIVRQLVRRAELAGFKAIALTVDTPRLGRREADIKNRFNLPPHLV 180
Query: 155 LKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDAR 214
LKNF+ LDLGKMD+ NDSGLA+YVA Q+DRSLSW DVKWLQTIT LPILVKGV+TAED R
Sbjct: 181 LKNFEALDLGKMDKTNDSGLASYVASQVDRSLSWTDVKWLQTITSLPILVKGVMTAEDTR 240
Query: 215 IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 274
+AV++GAAGIIVSNHGARQLDYVPATI LEEVV+ +GR+PVFLDGGVRRGTDVFKALA
Sbjct: 241 LAVESGAAGIIVSNHGARQLDYVPATISCLEEVVREAKGRLPVFLDGGVRRGTDVFKALA 300
Query: 275 LGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 334
LGASG+FIGRPV++SLA +GE GVR+VL+MLR+E EL MALSGC SL EITR+H++T+ D
Sbjct: 301 LGASGVFIGRPVLFSLAVDGEAGVRKVLQMLRDELELTMALSGCTSLAEITRNHVITDSD 360
|
Photorespiratory enzyme that can exert a strong regulation over photosynthesis, possibly through a feed-back inhibition on Rubisco activase. Not required for oxalate accumulation. Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 1 EC: . EC: 3 EC: . EC: 1 EC: 5 |
| >sp|B8AUI3|GLO3_ORYSI Peroxisomal (S)-2-hydroxy-acid oxidase GLO3 OS=Oryza sativa subsp. indica GN=GLO3 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 542 bits (1397), Expect = e-153, Method: Compositional matrix adjust.
Identities = 272/360 (75%), Positives = 303/360 (84%), Gaps = 26/360 (7%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
M ITNV EYE +AK+KLPKM++DYYASGAEDQWTL+ENR AFSRILFRPRILIDVS+I+
Sbjct: 1 MELITNVSEYEQLAKQKLPKMIYDYYASGAEDQWTLKENREAFSRILFRPRILIDVSRIN 60
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM---------------- 104
M T VLGF ISMPIMIAP+AMQKMAHPEGE ATARAASAAGTIM
Sbjct: 61 MATNVLGFNISMPIMIAPSAMQKMAHPEGELATARAASAAGTIMTLSSWSTSSVEEVNSA 120
Query: 105 ----------VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT 154
VYKDRN+V QLVRRAE AGFKAIALTVDTPRLGRREADIKNRF LPP L
Sbjct: 121 APGIRFFQLYVYKDRNIVRQLVRRAELAGFKAIALTVDTPRLGRREADIKNRFNLPPHLV 180
Query: 155 LKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDAR 214
LKNF+ LDLGKMD+ NDSGLA+YVA Q+DRSLSW DVKWLQTIT LPILVKGV+TAED R
Sbjct: 181 LKNFEALDLGKMDKTNDSGLASYVASQVDRSLSWTDVKWLQTITSLPILVKGVMTAEDTR 240
Query: 215 IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 274
+AV++GAAGIIVSNHGARQLDYVPATI LEEVV+ +GR+PVFLDGGVRRGTDVFKALA
Sbjct: 241 LAVESGAAGIIVSNHGARQLDYVPATISCLEEVVREAKGRLPVFLDGGVRRGTDVFKALA 300
Query: 275 LGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 334
LGASG+FIGRPV++SLA +GE GVR+VL+MLR+E EL MALSGC SL EITR+H++T+ D
Sbjct: 301 LGASGVFIGRPVLFSLAVDGEAGVRKVLQMLRDELELTMALSGCTSLAEITRNHVITDSD 360
|
Photorespiratory enzyme that can exert a strong regulation over photosynthesis, possibly through a feed-back inhibition on Rubisco activase. Not required for oxalate accumulation. Oryza sativa subsp. indica (taxid: 39946) EC: 1 EC: . EC: 1 EC: . EC: 3 EC: . EC: 1 EC: 5 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 344 | ||||||
| 147789493 | 371 | hypothetical protein VITISV_005886 [Viti | 0.994 | 0.921 | 0.843 | 1e-178 | |
| 189418957 | 369 | glycolate oxidase [Mikania micrantha] | 0.991 | 0.924 | 0.836 | 1e-177 | |
| 323650489 | 370 | glycolate oxidase [Mangifera indica] | 1.0 | 0.929 | 0.854 | 1e-175 | |
| 297790174 | 369 | hypothetical protein ARALYDRAFT_333142 [ | 0.994 | 0.926 | 0.853 | 1e-175 | |
| 304368145 | 371 | glycolate oxidase [Nicotiana benthamiana | 0.994 | 0.921 | 0.844 | 1e-173 | |
| 225462096 | 371 | PREDICTED: peroxisomal (S)-2-hydroxy-aci | 0.994 | 0.921 | 0.845 | 1e-173 | |
| 366984550 | 367 | glycolate oxidase [Gossypium hirsutum] | 0.988 | 0.926 | 0.847 | 1e-172 | |
| 359806771 | 371 | peroxisomal (S)-2-hydroxy-acid oxidase G | 0.994 | 0.921 | 0.845 | 1e-172 | |
| 224117076 | 369 | predicted protein [Populus trichocarpa] | 0.994 | 0.926 | 0.842 | 1e-172 | |
| 224121620 | 369 | predicted protein [Populus trichocarpa] | 0.994 | 0.926 | 0.847 | 1e-172 |
| >gi|147789493|emb|CAN67413.1| hypothetical protein VITISV_005886 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 629 bits (1622), Expect = e-178, Method: Compositional matrix adjust.
Identities = 312/370 (84%), Positives = 330/370 (89%), Gaps = 28/370 (7%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITNV EYEAIAK+KLPKMVFDYYASGAEDQWTL +NR+AFS+ILFRPRILIDVSKIDM
Sbjct: 2 EITNVTEYEAIAKQKLPKMVFDYYASGAEDQWTLYQNRHAFSQILFRPRILIDVSKIDMT 61
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM------------------ 104
TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASA GTIM
Sbjct: 62 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASATGTIMTLSSWATSSVEEVASTGP 121
Query: 105 --------VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 156
VYKDR+VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK
Sbjct: 122 GIRFFQLYVYKDRHVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 181
Query: 157 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIA 216
NF+GLDLGKMD+A+DSGLA+YVAGQIDR+LSWKDVKWLQTIT LPILVKGVLTAED R+A
Sbjct: 182 NFEGLDLGKMDKADDSGLASYVAGQIDRTLSWKDVKWLQTITNLPILVKGVLTAEDTRLA 241
Query: 217 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 276
+QAGAAGIIVSNHGARQLDYVPATIMALEEVVKA QGR+PVFLDGGVRRGTDVFKALALG
Sbjct: 242 IQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRVPVFLDGGVRRGTDVFKALALG 301
Query: 277 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDAS 336
ASGIFIGRPVV+SLAAEGE GVR+VL+MLREEFEL MALSGCRSLKEITRDHIVTEW+
Sbjct: 302 ASGIFIGRPVVFSLAAEGEAGVRKVLQMLREEFELTMALSGCRSLKEITRDHIVTEWEVP 361
Query: 337 LP--RPVPRL 344
P RP+PRL
Sbjct: 362 HPGSRPLPRL 371
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|189418957|gb|ACD93720.1| glycolate oxidase [Mikania micrantha] | Back alignment and taxonomy information |
|---|
Score = 626 bits (1614), Expect = e-177, Method: Compositional matrix adjust.
Identities = 307/367 (83%), Positives = 327/367 (89%), Gaps = 26/367 (7%)
Query: 4 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNT 63
+TNV EYEAIAKEKLPKMV+DYYASGAEDQWTL+E+RNAFSRILFRPRILIDVSKI M T
Sbjct: 3 VTNVTEYEAIAKEKLPKMVYDYYASGAEDQWTLEESRNAFSRILFRPRILIDVSKIVMTT 62
Query: 64 TVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM------------------- 104
T+LGFKISMPIM+APTAMQKMAHPEGEYATARAAS+AGTIM
Sbjct: 63 TILGFKISMPIMVAPTAMQKMAHPEGEYATARAASSAGTIMTLSSWATSSVEEAASTGPG 122
Query: 105 -------VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN 157
VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN
Sbjct: 123 IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN 182
Query: 158 FQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAV 217
F+GLDLGKMDEANDSGLA+YVAGQIDR+LSWKDV+WLQTITK+PILVKGV+TAED R+A+
Sbjct: 183 FEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDVQWLQTITKMPILVKGVITAEDTRLAI 242
Query: 218 QAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGA 277
QAGAAGIIVSNHGARQLDYVPATI ALEEVVKA QGR+PVFLDGGVRRGTDVFKALALGA
Sbjct: 243 QAGAAGIIVSNHGARQLDYVPATISALEEVVKAAQGRVPVFLDGGVRRGTDVFKALALGA 302
Query: 278 SGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDASL 337
+GIFIGRPVV SLAAEGE GVR+VL+MLR+EFEL MALSGC SLKEITRDHIVTEWDA
Sbjct: 303 AGIFIGRPVVLSLAAEGEAGVRKVLQMLRDEFELTMALSGCTSLKEITRDHIVTEWDAPK 362
Query: 338 PRPVPRL 344
RP PRL
Sbjct: 363 ARPAPRL 369
|
Source: Mikania micrantha Species: Mikania micrantha Genus: Mikania Family: Asteraceae Order: Asterales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|323650489|gb|ADX97325.1| glycolate oxidase [Mangifera indica] | Back alignment and taxonomy information |
|---|
Score = 621 bits (1602), Expect = e-175, Method: Compositional matrix adjust.
Identities = 316/370 (85%), Positives = 333/370 (90%), Gaps = 26/370 (7%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
M EITNVMEYEAIAK+KLPKMVFDYYASGAEDQWTL+ENR AFSRILFRPRILIDVSKID
Sbjct: 1 MEEITNVMEYEAIAKQKLPKMVFDYYASGAEDQWTLRENRFAFSRILFRPRILIDVSKID 60
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM---------------- 104
M TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM
Sbjct: 61 MTTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVAST 120
Query: 105 ----------VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT 154
VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT
Sbjct: 121 GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT 180
Query: 155 LKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDAR 214
L+NF+GLDLGKMD+ANDSGLA+YVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDAR
Sbjct: 181 LRNFEGLDLGKMDQANDSGLASYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDAR 240
Query: 215 IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 274
+A+QAGAAGIIVSNHGARQLDYVPATIMALEEVVKA+QGR+PVFLDGGVRRGTDVFKALA
Sbjct: 241 LAIQAGAAGIIVSNHGARQLDYVPATIMALEEVVKASQGRVPVFLDGGVRRGTDVFKALA 300
Query: 275 LGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 334
LGASGIFIGRPVV+SLAA+GE G+R+ L+MLR+EFEL MALSGCRSLKEITRDHIVT+WD
Sbjct: 301 LGASGIFIGRPVVFSLAADGEAGIRKALQMLRDEFELTMALSGCRSLKEITRDHIVTDWD 360
Query: 335 ASLPRPVPRL 344
PR PRL
Sbjct: 361 LPQPRIAPRL 370
|
Source: Mangifera indica Species: Mangifera indica Genus: Mangifera Family: Anacardiaceae Order: Sapindales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297790174|ref|XP_002862992.1| hypothetical protein ARALYDRAFT_333142 [Arabidopsis lyrata subsp. lyrata] gi|297839705|ref|XP_002887734.1| hypothetical protein ARALYDRAFT_895734 [Arabidopsis lyrata subsp. lyrata] gi|297308786|gb|EFH39251.1| hypothetical protein ARALYDRAFT_333142 [Arabidopsis lyrata subsp. lyrata] gi|297333575|gb|EFH63993.1| hypothetical protein ARALYDRAFT_895734 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 619 bits (1595), Expect = e-175, Method: Compositional matrix adjust.
Identities = 314/368 (85%), Positives = 332/368 (90%), Gaps = 26/368 (7%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITNV EYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDM
Sbjct: 2 EITNVNEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMT 61
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM------------------ 104
TTVLGFKISMPIM+APTAMQKMAHPEGEYATARAASAAGTIM
Sbjct: 62 TTVLGFKISMPIMVAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 121
Query: 105 --------VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 156
VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRRE+DIKNRFTLPP+LTLK
Sbjct: 122 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPYLTLK 181
Query: 157 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIA 216
NF+GLDLGKMDEANDSGLA+YVAGQIDR+LSWKDV+WLQTITKLPILVKGVLTAEDAR+A
Sbjct: 182 NFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDVQWLQTITKLPILVKGVLTAEDARMA 241
Query: 217 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 276
VQAGAAGIIVSNHGARQLDYVPATI+ALEEVVKA QG+IPVFLDGGVRRGTDVFKALALG
Sbjct: 242 VQAGAAGIIVSNHGARQLDYVPATIIALEEVVKAAQGKIPVFLDGGVRRGTDVFKALALG 301
Query: 277 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDAS 336
ASGIFIGRPVV+SLAAEGE GVR+VL+M+REEFEL MALSGC SLKEITR+HI+T+WDA
Sbjct: 302 ASGIFIGRPVVFSLAAEGEAGVRKVLQMMREEFELTMALSGCTSLKEITRNHIITDWDAP 361
Query: 337 LPRPVPRL 344
R VP+L
Sbjct: 362 QARLVPKL 369
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|304368145|gb|ADM26718.1| glycolate oxidase [Nicotiana benthamiana] | Back alignment and taxonomy information |
|---|
Score = 614 bits (1583), Expect = e-173, Method: Compositional matrix adjust.
Identities = 315/373 (84%), Positives = 333/373 (89%), Gaps = 31/373 (8%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
M E+TNVMEYEAIAK+KLPKMVFDYYASGAEDQWTL ENRNAFSRILFRPRILIDVSKID
Sbjct: 1 MEEVTNVMEYEAIAKKKLPKMVFDYYASGAEDQWTLAENRNAFSRILFRPRILIDVSKID 60
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM---------------- 104
M+TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM
Sbjct: 61 MSTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVAST 120
Query: 105 ----------VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT 154
VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRF LPPFLT
Sbjct: 121 GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLT 180
Query: 155 LKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDAR 214
LKNF+GLDLGKMD+A+DSGLA+YVAGQIDR+LSWKDV+WLQTIT LPILVKGVLTAEDAR
Sbjct: 181 LKNFEGLDLGKMDQASDSGLASYVAGQIDRTLSWKDVQWLQTITSLPILVKGVLTAEDAR 240
Query: 215 IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 274
+AVQAGAAGIIVSNHGARQLDYVP+TIMALEEVVKA QGRIPVFLDGGVRRGTDVFKALA
Sbjct: 241 LAVQAGAAGIIVSNHGARQLDYVPSTIMALEEVVKAAQGRIPVFLDGGVRRGTDVFKALA 300
Query: 275 LGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 334
LGASGIFIGRPVV+SLAAEGE G+++VL+MLR+EFEL MALSGCRSL EITR+HIVTEWD
Sbjct: 301 LGASGIFIGRPVVFSLAAEGEAGIKKVLQMLRDEFELTMALSGCRSLNEITRNHIVTEWD 360
Query: 335 ASLPR---PVPRL 344
A PR P PRL
Sbjct: 361 A--PRAALPAPRL 371
|
Source: Nicotiana benthamiana Species: Nicotiana benthamiana Genus: Nicotiana Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225462096|ref|XP_002277249.1| PREDICTED: peroxisomal (S)-2-hydroxy-acid oxidase GLO1 [Vitis vinifera] gi|296086772|emb|CBI32921.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 612 bits (1578), Expect = e-173, Method: Compositional matrix adjust.
Identities = 313/370 (84%), Positives = 331/370 (89%), Gaps = 28/370 (7%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITNV EYEAIAK+KLPKMVFDYYASGAEDQWTL +NR+AFS+ILFRPRILIDVSKIDM
Sbjct: 2 EITNVTEYEAIAKQKLPKMVFDYYASGAEDQWTLYQNRHAFSQILFRPRILIDVSKIDMT 61
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM------------------ 104
TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM
Sbjct: 62 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 121
Query: 105 --------VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 156
VYKDR+VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK
Sbjct: 122 GIRFFQLYVYKDRHVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 181
Query: 157 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIA 216
NF+GLDLGKMD+A+DSGLA+YVAGQIDR+LSWKDVKWLQTIT LPILVKGVLTAED R+A
Sbjct: 182 NFEGLDLGKMDKADDSGLASYVAGQIDRTLSWKDVKWLQTITNLPILVKGVLTAEDTRLA 241
Query: 217 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 276
+QAGAAGIIVSNHGARQLDYVPATIMALEEVVKA QGR+PVFLDGGVRRGTDVFKALALG
Sbjct: 242 IQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRVPVFLDGGVRRGTDVFKALALG 301
Query: 277 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDAS 336
ASGIFIGRPVV+SLAAEGE GVR+VL+MLREEFEL MALSGCRSLKEITRDHIVTEW+
Sbjct: 302 ASGIFIGRPVVFSLAAEGEAGVRKVLQMLREEFELTMALSGCRSLKEITRDHIVTEWEVP 361
Query: 337 LP--RPVPRL 344
P RP+PRL
Sbjct: 362 PPGSRPLPRL 371
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|366984550|gb|AEX09184.1| glycolate oxidase [Gossypium hirsutum] | Back alignment and taxonomy information |
|---|
Score = 611 bits (1575), Expect = e-172, Method: Compositional matrix adjust.
Identities = 312/368 (84%), Positives = 329/368 (89%), Gaps = 28/368 (7%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITN+ EYEAIAKEKLPKMV+DYYASGAEDQWTL+ENRNAFSRILFRPRILIDVSKIDM
Sbjct: 2 EITNITEYEAIAKEKLPKMVYDYYASGAEDQWTLKENRNAFSRILFRPRILIDVSKIDMT 61
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM------------------ 104
TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM
Sbjct: 62 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEDVASTGP 121
Query: 105 --------VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 156
VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK
Sbjct: 122 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 181
Query: 157 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIA 216
NF+GL+LGKMD+ +DSGLA+YVAGQIDRSLSWKDVKWLQTIT LPILVKGVL AEDAR+A
Sbjct: 182 NFEGLNLGKMDKTDDSGLASYVAGQIDRSLSWKDVKWLQTITSLPILVKGVLNAEDARLA 241
Query: 217 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 276
+QAGAAGIIVSNHGARQLDYVPATIMALEEVVKA QGR+PVFLDGGVRRGTDVFKALALG
Sbjct: 242 IQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRVPVFLDGGVRRGTDVFKALALG 301
Query: 277 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDAS 336
ASGIFIGRPVV+SLAAEGE GVR+VL+MLR+EFEL MALSGCRSLKEITR+HIV +WD
Sbjct: 302 ASGIFIGRPVVFSLAAEGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIVADWDQ- 360
Query: 337 LPRPVPRL 344
PR VPRL
Sbjct: 361 -PRVVPRL 367
|
Source: Gossypium hirsutum Species: Gossypium hirsutum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359806771|ref|NP_001241302.1| peroxisomal (S)-2-hydroxy-acid oxidase GLO1-like [Glycine max] gi|167961875|dbj|BAG09382.1| peroxisomal glycolate oxidase [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 610 bits (1574), Expect = e-172, Method: Compositional matrix adjust.
Identities = 313/370 (84%), Positives = 330/370 (89%), Gaps = 28/370 (7%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITNV EYEAIAK+KLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID+
Sbjct: 2 EITNVSEYEAIAKQKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDIT 61
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM------------------ 104
TTVLGFKISMPIM+APTAMQKMAHPEGEYATARAASAAGTIM
Sbjct: 62 TTVLGFKISMPIMLAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 121
Query: 105 --------VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 156
VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK
Sbjct: 122 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 181
Query: 157 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIA 216
NF+GLDLGKMD+A+DSGLA+YVAGQIDR+LSWKDVKWLQTITKLPILVKGVLTAED RIA
Sbjct: 182 NFEGLDLGKMDKADDSGLASYVAGQIDRTLSWKDVKWLQTITKLPILVKGVLTAEDTRIA 241
Query: 217 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 276
VQ+GAAGIIVSNHGARQLDYVPATI ALEEVVKA +GR+PVFLDGGVRRGTDVFKALALG
Sbjct: 242 VQSGAAGIIVSNHGARQLDYVPATISALEEVVKAAEGRVPVFLDGGVRRGTDVFKALALG 301
Query: 277 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDA- 335
ASGIFIGRPVV+SLAAEGE GVR VL MLREEFEL MALSGC SLK+ITRDHIVT+WD
Sbjct: 302 ASGIFIGRPVVFSLAAEGEAGVRNVLRMLREEFELTMALSGCTSLKDITRDHIVTDWDQP 361
Query: 336 -SLPRPVPRL 344
++PR +PRL
Sbjct: 362 RTIPRALPRL 371
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224117076|ref|XP_002317470.1| predicted protein [Populus trichocarpa] gi|118489504|gb|ABK96554.1| unknown [Populus trichocarpa x Populus deltoides] gi|222860535|gb|EEE98082.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 610 bits (1574), Expect = e-172, Method: Compositional matrix adjust.
Identities = 310/368 (84%), Positives = 330/368 (89%), Gaps = 26/368 (7%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITNVMEYEAIAK+KLPKMVFDYYASGAEDQWTL ENRNAFSRILFRPRILIDVSKIDM
Sbjct: 2 EITNVMEYEAIAKQKLPKMVFDYYASGAEDQWTLAENRNAFSRILFRPRILIDVSKIDMA 61
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM------------------ 104
TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM
Sbjct: 62 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 121
Query: 105 --------VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 156
VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRRE+DIKNRF+LPPFLTLK
Sbjct: 122 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFSLPPFLTLK 181
Query: 157 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIA 216
NF+GLDLGKMD+A+DSGLA+YVAGQIDR+LSWKDV+WLQTIT+LPILVKGVLTAEDAR++
Sbjct: 182 NFEGLDLGKMDKADDSGLASYVAGQIDRTLSWKDVEWLQTITRLPILVKGVLTAEDARLS 241
Query: 217 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 276
VQAGAAGIIVSNHGARQLDYVP+TIMALEEVVKA QGR+PVFLDGGVRRGTDVFKALALG
Sbjct: 242 VQAGAAGIIVSNHGARQLDYVPSTIMALEEVVKAAQGRVPVFLDGGVRRGTDVFKALALG 301
Query: 277 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDAS 336
ASGIFIGRPVV+SLA+EGE GVR+VL+MLREEFEL MALSGCRSLKEITRDHIV +WD
Sbjct: 302 ASGIFIGRPVVFSLASEGEAGVRKVLQMLREEFELTMALSGCRSLKEITRDHIVADWDHP 361
Query: 337 LPRPVPRL 344
R P+L
Sbjct: 362 RARLAPKL 369
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224121620|ref|XP_002330746.1| predicted protein [Populus trichocarpa] gi|118486606|gb|ABK95141.1| unknown [Populus trichocarpa] gi|222872522|gb|EEF09653.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 610 bits (1572), Expect = e-172, Method: Compositional matrix adjust.
Identities = 312/368 (84%), Positives = 328/368 (89%), Gaps = 26/368 (7%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITNV EYEAIAK+KLPKMV+DYYASGAEDQWTL ENRNAFSRILFRPRILIDVSKIDM
Sbjct: 2 EITNVTEYEAIAKQKLPKMVYDYYASGAEDQWTLAENRNAFSRILFRPRILIDVSKIDMA 61
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM------------------ 104
TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM
Sbjct: 62 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 121
Query: 105 --------VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 156
VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK
Sbjct: 122 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 181
Query: 157 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIA 216
NF+GLDLGKMD+A DSGLA+YVAGQIDR+LSWKDV+WLQTITKLPILVKGVLTAEDAR++
Sbjct: 182 NFEGLDLGKMDKAADSGLASYVAGQIDRTLSWKDVEWLQTITKLPILVKGVLTAEDARLS 241
Query: 217 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 276
VQAGAAGIIVSNHGARQLDYVP+TIMALEEVVKA QGR+PVFLDGGVRRGTDVFKALALG
Sbjct: 242 VQAGAAGIIVSNHGARQLDYVPSTIMALEEVVKAAQGRVPVFLDGGVRRGTDVFKALALG 301
Query: 277 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDAS 336
ASGIFIGRPVV+SLA+EGE GVR+VL+MLREEFEL MALSGCRSLKEITR HIV +WD
Sbjct: 302 ASGIFIGRPVVFSLASEGETGVRKVLQMLREEFELTMALSGCRSLKEITRAHIVADWDHP 361
Query: 337 LPRPVPRL 344
L R PRL
Sbjct: 362 LNRLAPRL 369
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 344 | ||||||
| TAIR|locus:2091642 | 367 | GOX1 "glycolate oxidase 1" [Ar | 0.697 | 0.653 | 0.834 | 1.6e-147 | |
| UNIPROTKB|B8AKX6 | 369 | GLO1 "Peroxisomal (S)-2-hydrox | 0.700 | 0.653 | 0.776 | 2.4e-140 | |
| UNIPROTKB|Q10CE4 | 369 | GLO1 "Peroxisomal (S)-2-hydrox | 0.700 | 0.653 | 0.776 | 2.4e-140 | |
| UNIPROTKB|B8B7C5 | 369 | GLO5 "Peroxisomal (S)-2-hydrox | 0.674 | 0.628 | 0.793 | 1.3e-139 | |
| UNIPROTKB|Q6YT73 | 369 | GLO5 "Peroxisomal (S)-2-hydrox | 0.674 | 0.628 | 0.793 | 1.3e-139 | |
| TAIR|locus:2124499 | 368 | GOX3 "glycolate oxidase 3" [Ar | 0.674 | 0.630 | 0.767 | 3.1e-138 | |
| UNIPROTKB|B8AUI3 | 367 | GLO3 "Peroxisomal (S)-2-hydrox | 0.674 | 0.632 | 0.754 | 2.3e-131 | |
| UNIPROTKB|Q7FAS1 | 367 | GLO3 "Peroxisomal (S)-2-hydrox | 0.674 | 0.632 | 0.754 | 2.3e-131 | |
| UNIPROTKB|Q01KC2 | 368 | GLO2 "Peroxisomal (S)-2-hydrox | 0.674 | 0.630 | 0.672 | 4.2e-117 | |
| UNIPROTKB|Q7XPR4 | 368 | GLO2 "Peroxisomal (S)-2-hydrox | 0.674 | 0.630 | 0.672 | 4.2e-117 |
| TAIR|locus:2091642 GOX1 "glycolate oxidase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1014 (362.0 bits), Expect = 1.6e-147, Sum P(2) = 1.6e-147
Identities = 202/242 (83%), Positives = 215/242 (88%)
Query: 103 IMVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLD 162
+ VYK+RNVV QLVRRAERAGFKAIALTVDTPRLGRRE+DIKNRFTLPP LTLKNF+GLD
Sbjct: 128 LYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLD 187
Query: 163 LGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDXXXXXXXXXX 222
LGKMDEANDSGLA+YVAGQIDR+LSWKDV+WLQTITKLPILVKGVLT ED
Sbjct: 188 LGKMDEANDSGLASYVAGQIDRTLSWKDVQWLQTITKLPILVKGVLTGEDARIAIQAGAA 247
Query: 223 XXXXSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 282
SNHGARQLDYVPATI ALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI
Sbjct: 248 GIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 307
Query: 283 GRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDASLPRPVP 342
GRPVV+SLAAEGE GVR+VL+MLR+EFEL MALSGCRSLKEI+R+HI TEWD PRP
Sbjct: 308 GRPVVFSLAAEGEAGVRKVLQMLRDEFELTMALSGCRSLKEISRNHITTEWDT--PRPSA 365
Query: 343 RL 344
RL
Sbjct: 366 RL 367
|
|
| UNIPROTKB|B8AKX6 GLO1 "Peroxisomal (S)-2-hydroxy-acid oxidase GLO1" [Oryza sativa Indica Group (taxid:39946)] | Back alignment and assigned GO terms |
|---|
Score = 947 (338.4 bits), Expect = 2.4e-140, Sum P(2) = 2.4e-140
Identities = 188/242 (77%), Positives = 206/242 (85%)
Query: 103 IMVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLD 162
+ VYKDRNVV QLVRRAERAGFKAIALTVDTPRLGRREADIKNRF LPP+LTLKNF+GLD
Sbjct: 129 LYVYKDRNVVEQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPYLTLKNFEGLD 188
Query: 163 LGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDXXXXXXXXXX 222
L +MD++NDSGLA+YVAGQIDR+LSWKDVKWLQ+IT LPILVKGV+TAED
Sbjct: 189 LAEMDKSNDSGLASYVAGQIDRTLSWKDVKWLQSITSLPILVKGVITAEDARLAVHSGAA 248
Query: 223 XXXXSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 282
SNHGARQLDYVPATI ALEEVV A GRIPV+LDGGVRRGTDVFKALALGA+G+FI
Sbjct: 249 GIIVSNHGARQLDYVPATISALEEVVTAAAGRIPVYLDGGVRRGTDVFKALALGAAGVFI 308
Query: 283 GRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDASLPRPVP 342
GRPVV++LAAEGE GVR VL M+REEFEL MALSGC SL +ITR HI T+ D L RP P
Sbjct: 309 GRPVVFALAAEGEAGVRNVLRMMREEFELTMALSGCTSLADITRAHIYTDADR-LARPFP 367
Query: 343 RL 344
RL
Sbjct: 368 RL 369
|
|
| UNIPROTKB|Q10CE4 GLO1 "Peroxisomal (S)-2-hydroxy-acid oxidase GLO1" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 947 (338.4 bits), Expect = 2.4e-140, Sum P(2) = 2.4e-140
Identities = 188/242 (77%), Positives = 206/242 (85%)
Query: 103 IMVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLD 162
+ VYKDRNVV QLVRRAERAGFKAIALTVDTPRLGRREADIKNRF LPP+LTLKNF+GLD
Sbjct: 129 LYVYKDRNVVEQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPYLTLKNFEGLD 188
Query: 163 LGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDXXXXXXXXXX 222
L +MD++NDSGLA+YVAGQIDR+LSWKDVKWLQ+IT LPILVKGV+TAED
Sbjct: 189 LAEMDKSNDSGLASYVAGQIDRTLSWKDVKWLQSITSLPILVKGVITAEDARLAVHSGAA 248
Query: 223 XXXXSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 282
SNHGARQLDYVPATI ALEEVV A GRIPV+LDGGVRRGTDVFKALALGA+G+FI
Sbjct: 249 GIIVSNHGARQLDYVPATISALEEVVTAAAGRIPVYLDGGVRRGTDVFKALALGAAGVFI 308
Query: 283 GRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDASLPRPVP 342
GRPVV++LAAEGE GVR VL M+REEFEL MALSGC SL +ITR HI T+ D L RP P
Sbjct: 309 GRPVVFALAAEGEAGVRNVLRMMREEFELTMALSGCTSLADITRAHIYTDADR-LARPFP 367
Query: 343 RL 344
RL
Sbjct: 368 RL 369
|
|
| UNIPROTKB|B8B7C5 GLO5 "Peroxisomal (S)-2-hydroxy-acid oxidase GLO5" [Oryza sativa Indica Group (taxid:39946)] | Back alignment and assigned GO terms |
|---|
Score = 943 (337.0 bits), Expect = 1.3e-139, Sum P(2) = 1.3e-139
Identities = 184/232 (79%), Positives = 204/232 (87%)
Query: 103 IMVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLD 162
+ VYKDR VV QLVRRAERAGFKAIALTVDTPRLGRREADIKNRF LPPFLTLKNF+GL+
Sbjct: 129 LYVYKDRRVVEQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLKNFEGLE 188
Query: 163 LGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDXXXXXXXXXX 222
LGKMD+A+DSGLA+YVAGQIDR+LSWKDVKWLQTIT LPILVKGV+TAED
Sbjct: 189 LGKMDQASDSGLASYVAGQIDRTLSWKDVKWLQTITTLPILVKGVITAEDTRLAVENGAA 248
Query: 223 XXXXSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 282
SNHGARQLDYVPATI ALEEVVKA +G++PVFLDGGVRRGTDVFKALALGA+G+FI
Sbjct: 249 GIIVSNHGARQLDYVPATISALEEVVKAARGQLPVFLDGGVRRGTDVFKALALGAAGVFI 308
Query: 283 GRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 334
GRPVV+SLAA GE GVR VL+MLR+EFEL MALSGC SL +ITR+H++TE D
Sbjct: 309 GRPVVFSLAAAGEAGVRNVLQMLRDEFELTMALSGCTSLADITRNHVITEAD 360
|
|
| UNIPROTKB|Q6YT73 GLO5 "Peroxisomal (S)-2-hydroxy-acid oxidase GLO5" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 943 (337.0 bits), Expect = 1.3e-139, Sum P(2) = 1.3e-139
Identities = 184/232 (79%), Positives = 204/232 (87%)
Query: 103 IMVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLD 162
+ VYKDR VV QLVRRAERAGFKAIALTVDTPRLGRREADIKNRF LPPFLTLKNF+GL+
Sbjct: 129 LYVYKDRRVVEQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLKNFEGLE 188
Query: 163 LGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDXXXXXXXXXX 222
LGKMD+A+DSGLA+YVAGQIDR+LSWKDVKWLQTIT LPILVKGV+TAED
Sbjct: 189 LGKMDQASDSGLASYVAGQIDRTLSWKDVKWLQTITTLPILVKGVITAEDTRLAVENGAA 248
Query: 223 XXXXSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 282
SNHGARQLDYVPATI ALEEVVKA +G++PVFLDGGVRRGTDVFKALALGA+G+FI
Sbjct: 249 GIIVSNHGARQLDYVPATISALEEVVKAARGQLPVFLDGGVRRGTDVFKALALGAAGVFI 308
Query: 283 GRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 334
GRPVV+SLAA GE GVR VL+MLR+EFEL MALSGC SL +ITR+H++TE D
Sbjct: 309 GRPVVFSLAAAGEAGVRNVLQMLRDEFELTMALSGCTSLADITRNHVITEAD 360
|
|
| TAIR|locus:2124499 GOX3 "glycolate oxidase 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 931 (332.8 bits), Expect = 3.1e-138, Sum P(2) = 3.1e-138
Identities = 178/232 (76%), Positives = 204/232 (87%)
Query: 103 IMVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLD 162
+ VYKDRNVV QLV+RAE AGFKAIALTVDTPRLGRRE+DIKNRF LP LTLKNF+GLD
Sbjct: 128 LYVYKDRNVVIQLVKRAEEAGFKAIALTVDTPRLGRRESDIKNRFALPRGLTLKNFEGLD 187
Query: 163 LGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDXXXXXXXXXX 222
LGK+D+ NDSGLA+YVAGQ+D+SLSWKD+KWLQ+IT LPILVKGV+TAED
Sbjct: 188 LGKIDKTNDSGLASYVAGQVDQSLSWKDIKWLQSITSLPILVKGVITAEDARIAVEYGAA 247
Query: 223 XXXXSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 282
SNHGARQLDYVPATI+ALEEVVKA +GRIPVFLDGGVRRGTDVFKALALGASG+F+
Sbjct: 248 GIIVSNHGARQLDYVPATIVALEEVVKAVEGRIPVFLDGGVRRGTDVFKALALGASGVFV 307
Query: 283 GRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 334
GRP ++SLAA+GE GVR++L+MLR+EFEL MALSGCRSL+EI+R HI T+WD
Sbjct: 308 GRPSLFSLAADGEAGVRKMLQMLRDEFELTMALSGCRSLREISRTHIKTDWD 359
|
|
| UNIPROTKB|B8AUI3 GLO3 "Peroxisomal (S)-2-hydroxy-acid oxidase GLO3" [Oryza sativa Indica Group (taxid:39946)] | Back alignment and assigned GO terms |
|---|
Score = 906 (324.0 bits), Expect = 2.3e-131, Sum P(2) = 2.3e-131
Identities = 175/232 (75%), Positives = 196/232 (84%)
Query: 103 IMVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLD 162
+ VYKDRN+V QLVRRAE AGFKAIALTVDTPRLGRREADIKNRF LPP L LKNF+ LD
Sbjct: 129 LYVYKDRNIVRQLVRRAELAGFKAIALTVDTPRLGRREADIKNRFNLPPHLVLKNFEALD 188
Query: 163 LGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDXXXXXXXXXX 222
LGKMD+ NDSGLA+YVA Q+DRSLSW DVKWLQTIT LPILVKGV+TAED
Sbjct: 189 LGKMDKTNDSGLASYVASQVDRSLSWTDVKWLQTITSLPILVKGVMTAEDTRLAVESGAA 248
Query: 223 XXXXSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 282
SNHGARQLDYVPATI LEEVV+ +GR+PVFLDGGVRRGTDVFKALALGASG+FI
Sbjct: 249 GIIVSNHGARQLDYVPATISCLEEVVREAKGRLPVFLDGGVRRGTDVFKALALGASGVFI 308
Query: 283 GRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 334
GRPV++SLA +GE GVR+VL+MLR+E EL MALSGC SL EITR+H++T+ D
Sbjct: 309 GRPVLFSLAVDGEAGVRKVLQMLRDELELTMALSGCTSLAEITRNHVITDSD 360
|
|
| UNIPROTKB|Q7FAS1 GLO3 "Peroxisomal (S)-2-hydroxy-acid oxidase GLO3" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 906 (324.0 bits), Expect = 2.3e-131, Sum P(2) = 2.3e-131
Identities = 175/232 (75%), Positives = 196/232 (84%)
Query: 103 IMVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLD 162
+ VYKDRN+V QLVRRAE AGFKAIALTVDTPRLGRREADIKNRF LPP L LKNF+ LD
Sbjct: 129 LYVYKDRNIVRQLVRRAELAGFKAIALTVDTPRLGRREADIKNRFNLPPHLVLKNFEALD 188
Query: 163 LGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDXXXXXXXXXX 222
LGKMD+ NDSGLA+YVA Q+DRSLSW DVKWLQTIT LPILVKGV+TAED
Sbjct: 189 LGKMDKTNDSGLASYVASQVDRSLSWTDVKWLQTITSLPILVKGVMTAEDTRLAVESGAA 248
Query: 223 XXXXSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 282
SNHGARQLDYVPATI LEEVV+ +GR+PVFLDGGVRRGTDVFKALALGASG+FI
Sbjct: 249 GIIVSNHGARQLDYVPATISCLEEVVREAKGRLPVFLDGGVRRGTDVFKALALGASGVFI 308
Query: 283 GRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 334
GRPV++SLA +GE GVR+VL+MLR+E EL MALSGC SL EITR+H++T+ D
Sbjct: 309 GRPVLFSLAVDGEAGVRKVLQMLRDELELTMALSGCTSLAEITRNHVITDSD 360
|
|
| UNIPROTKB|Q01KC2 GLO2 "Peroxisomal (S)-2-hydroxy-acid oxidase GLO2" [Oryza sativa Indica Group (taxid:39946)] | Back alignment and assigned GO terms |
|---|
Score = 828 (296.5 bits), Expect = 4.2e-117, Sum P(2) = 4.2e-117
Identities = 156/232 (67%), Positives = 185/232 (79%)
Query: 103 IMVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLD 162
+ +YKDRN+V QL++RAE+AG+KAI LTVD P LGRREAD+KNRFTLP + LK F+GLD
Sbjct: 129 LSIYKDRNLVQQLIQRAEKAGYKAIVLTVDAPWLGRREADVKNRFTLPQNVMLKIFEGLD 188
Query: 163 LGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDXXXXXXXXXX 222
GK+DE N SGLAAYVA QIDRS SWKD+KWLQT+T LP+LVKG++TA+D
Sbjct: 189 QGKIDETNGSGLAAYVASQIDRSFSWKDIKWLQTVTSLPVLVKGIITAQDTRIAIEYGAA 248
Query: 223 XXXXSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 282
SNHG RQLDY+PATI LEEVV+ GR+PVF+D G RRGTDVFKALALGASG+FI
Sbjct: 249 GIIMSNHGGRQLDYLPATISCLEEVVREANGRVPVFIDSGFRRGTDVFKALALGASGVFI 308
Query: 283 GRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 334
GRPV++SLA +GE GVR L MLR+E E+ MALSGC S+KEITR H+VTE D
Sbjct: 309 GRPVLFSLAIDGEAGVRNALRMLRDELEITMALSGCTSVKEITRGHVVTESD 360
|
|
| UNIPROTKB|Q7XPR4 GLO2 "Peroxisomal (S)-2-hydroxy-acid oxidase GLO2" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 828 (296.5 bits), Expect = 4.2e-117, Sum P(2) = 4.2e-117
Identities = 156/232 (67%), Positives = 185/232 (79%)
Query: 103 IMVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLD 162
+ +YKDRN+V QL++RAE+AG+KAI LTVD P LGRREAD+KNRFTLP + LK F+GLD
Sbjct: 129 LSIYKDRNLVQQLIQRAEKAGYKAIVLTVDAPWLGRREADVKNRFTLPQNVMLKIFEGLD 188
Query: 163 LGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDXXXXXXXXXX 222
GK+DE N SGLAAYVA QIDRS SWKD+KWLQT+T LP+LVKG++TA+D
Sbjct: 189 QGKIDETNGSGLAAYVASQIDRSFSWKDIKWLQTVTSLPVLVKGIITAQDTRIAIEYGAA 248
Query: 223 XXXXSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 282
SNHG RQLDY+PATI LEEVV+ GR+PVF+D G RRGTDVFKALALGASG+FI
Sbjct: 249 GIIMSNHGGRQLDYLPATISCLEEVVREANGRVPVFIDSGFRRGTDVFKALALGASGVFI 308
Query: 283 GRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 334
GRPV++SLA +GE GVR L MLR+E E+ MALSGC S+KEITR H+VTE D
Sbjct: 309 GRPVLFSLAIDGEAGVRNALRMLRDELEITMALSGCTSVKEITRGHVVTESD 360
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| B8B8K5 | GLO4_ORYSI | 1, ., 1, ., 3, ., 1, 5 | 0.5577 | 0.9505 | 0.8934 | N/A | no |
| B2FIJ0 | LLDD_STRMK | 1, ., 1, ., 2, ., 3 | 0.3386 | 0.9534 | 0.8654 | yes | no |
| Q54E41 | HAOX_DICDI | 1, ., 1, ., 3, ., 1, 5 | 0.4848 | 0.9563 | 0.8479 | yes | no |
| Q9LRR9 | GLO1_ARATH | 1, ., 1, ., 3, ., 1, 5 | 0.8396 | 0.9883 | 0.9264 | yes | no |
| Q01KC2 | GLO2_ORYSI | 1, ., 1, ., 3, ., 1, 5 | 0.6638 | 0.9709 | 0.9076 | N/A | no |
| B7M492 | LLDD_ECO8A | 1, ., 1, ., 2, ., 3 | 0.3272 | 0.9738 | 0.8459 | yes | no |
| B4SMK1 | LLDD_STRM5 | 1, ., 1, ., 2, ., 3 | 0.336 | 0.9534 | 0.8654 | yes | no |
| P20932 | MDLB_PSEPU | 1, ., 1, ., 9, 9, ., 3, 1 | 0.3449 | 0.9534 | 0.8346 | yes | no |
| B7L725 | LLDD_ECO55 | 1, ., 1, ., 2, ., 3 | 0.3272 | 0.9738 | 0.8459 | yes | no |
| Q87G18 | LLDD_VIBPA | 1, ., 1, ., 2, ., 3 | 0.3288 | 0.9505 | 0.8627 | yes | no |
| B8AUI3 | GLO3_ORYSI | 1, ., 1, ., 3, ., 1, 5 | 0.7555 | 0.9709 | 0.9100 | N/A | no |
| Q3YVX0 | LLDD_SHISS | 1, ., 1, ., 2, ., 3 | 0.3272 | 0.9738 | 0.8459 | yes | no |
| B7NER0 | LLDD_ECOLU | 1, ., 1, ., 2, ., 3 | 0.3272 | 0.9738 | 0.8459 | yes | no |
| A7IMB0 | LLDD_XANP2 | 1, ., 1, ., 2, ., 3 | 0.3333 | 0.9767 | 0.8659 | yes | no |
| A7MNF6 | LLDD_CROS8 | 1, ., 1, ., 2, ., 3 | 0.3422 | 0.9505 | 0.8154 | yes | no |
| B8B7C5 | GLO5_ORYSI | 1, ., 1, ., 3, ., 1, 5 | 0.7972 | 0.9709 | 0.9051 | N/A | no |
| Q6YT73 | GLO5_ORYSJ | 1, ., 1, ., 3, ., 1, 5 | 0.7972 | 0.9709 | 0.9051 | no | no |
| Q0SYD1 | LLDD_SHIF8 | 1, ., 1, ., 2, ., 3 | 0.3272 | 0.9738 | 0.8459 | yes | no |
| B1LK44 | LLDD_ECOSM | 1, ., 1, ., 2, ., 3 | 0.3297 | 0.9563 | 0.8308 | yes | no |
| A8A670 | LLDD_ECOHS | 1, ., 1, ., 2, ., 3 | 0.3272 | 0.9738 | 0.8459 | yes | no |
| O49506 | GLO5_ARATH | 1, ., 1, ., 3, ., 1, 5 | 0.7932 | 0.9651 | 0.9021 | no | no |
| Q10CE4 | GLO1_ORYSJ | 1, ., 1, ., 3, ., 1, 5 | 0.7891 | 0.9970 | 0.9295 | yes | no |
| A7ZTF9 | LLDD_ECO24 | 1, ., 1, ., 2, ., 3 | 0.3272 | 0.9738 | 0.8459 | yes | no |
| B1IZI5 | LLDD_ECOLC | 1, ., 1, ., 2, ., 3 | 0.3272 | 0.9738 | 0.8459 | yes | no |
| Q9LRS0 | GLO2_ARATH | 1, ., 1, ., 3, ., 1, 5 | 0.8152 | 0.9883 | 0.9264 | yes | no |
| B6I3I4 | LLDD_ECOSE | 1, ., 1, ., 2, ., 3 | 0.3272 | 0.9738 | 0.8459 | yes | no |
| B8AKX6 | GLO1_ORYSI | 1, ., 1, ., 3, ., 1, 5 | 0.7891 | 0.9970 | 0.9295 | N/A | no |
| Q83PP7 | LLDD_SHIFL | 1, ., 1, ., 2, ., 3 | 0.3272 | 0.9738 | 0.8459 | yes | no |
| A1AHE2 | LLDD_ECOK1 | 1, ., 1, ., 2, ., 3 | 0.3272 | 0.9738 | 0.8459 | yes | no |
| Q9UJM8 | HAOX1_HUMAN | 1, ., 1, ., 3, ., 1, 5 | 0.5342 | 0.9302 | 0.8648 | yes | no |
| Q7FAS1 | GLO3_ORYSJ | 1, ., 1, ., 3, ., 1, 5 | 0.7555 | 0.9709 | 0.9100 | no | no |
| Q6DAY3 | LLDD_ERWCT | 1, ., 1, ., 2, ., 3 | 0.3422 | 0.9505 | 0.8471 | yes | no |
| P05414 | GOX_SPIOL | 1, ., 1, ., 3, ., 1, 5 | 0.8179 | 0.9941 | 0.9268 | N/A | no |
| Q3ZBW2 | HAOX2_BOVIN | 1, ., 1, ., 3, ., 1, 5 | 0.4305 | 0.9273 | 0.9036 | yes | no |
| Q9WU19 | HAOX1_MOUSE | 1, ., 1, ., 3, ., 1, 5 | 0.5184 | 0.9389 | 0.8729 | yes | no |
| B2U5C2 | LLDD_SHIB3 | 1, ., 1, ., 2, ., 3 | 0.3272 | 0.9738 | 0.8459 | yes | no |
| Q329P9 | LLDD_SHIDS | 1, ., 1, ., 2, ., 3 | 0.3272 | 0.9738 | 0.8459 | yes | no |
| B5YWA7 | LLDD_ECO5E | 1, ., 1, ., 2, ., 3 | 0.3272 | 0.9738 | 0.8459 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 1.1.3 | 0.998 |
| 3rd Layer | 1.1.3.15 | 0.994 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 344 | |||
| PLN02493 | 367 | PLN02493, PLN02493, probable peroxisomal (S)-2-hyd | 0.0 | |
| PLN02979 | 366 | PLN02979, PLN02979, glycolate oxidase | 0.0 | |
| PLN02535 | 364 | PLN02535, PLN02535, glycolate oxidase | 1e-174 | |
| pfam01070 | 302 | pfam01070, FMN_dh, FMN-dependent dehydrogenase | 1e-147 | |
| cd02809 | 299 | cd02809, alpha_hydroxyacid_oxid_FMN, Family of hom | 1e-147 | |
| cd02922 | 344 | cd02922, FCB2_FMN, Flavocytochrome b2 (FCB2) FMN-b | 1e-126 | |
| COG1304 | 360 | COG1304, idi, Isopentenyl diphosphate isomerase (B | 1e-114 | |
| cd03332 | 383 | cd03332, LMO_FMN, L-Lactate 2-monooxygenase (LMO) | 1e-104 | |
| cd04737 | 351 | cd04737, LOX_like_FMN, L-Lactate oxidase (LOX) FMN | 1e-102 | |
| cd04736 | 361 | cd04736, MDH_FMN, Mandelate dehydrogenase (MDH)-li | 9e-89 | |
| PRK11197 | 381 | PRK11197, lldD, L-lactate dehydrogenase; Provision | 3e-76 | |
| TIGR02708 | 367 | TIGR02708, L_lactate_ox, L-lactate oxidase | 9e-74 | |
| TIGR03966 | 385 | TIGR03966, actino_HemFlav, heme/flavin dehydrogena | 2e-67 | |
| TIGR02151 | 333 | TIGR02151, IPP_isom_2, isopentenyl-diphosphate del | 7e-23 | |
| PRK05437 | 352 | PRK05437, PRK05437, isopentenyl pyrophosphate isom | 2e-16 | |
| cd02811 | 326 | cd02811, IDI-2_FMN, Isopentenyl-diphosphate:dimeth | 5e-14 | |
| cd04722 | 200 | cd04722, TIM_phosphate_binding, TIM barrel protein | 2e-09 | |
| cd02808 | 392 | cd02808, GltS_FMN, Glutamate synthase (GltS) FMN-b | 2e-09 | |
| cd04730 | 236 | cd04730, NPD_like, 2-Nitropropane dioxygenase (NPD | 2e-07 | |
| cd00381 | 325 | cd00381, IMPDH, IMPDH: The catalytic domain of the | 1e-06 | |
| TIGR01302 | 450 | TIGR01302, IMP_dehydrog, inosine-5'-monophosphate | 3e-06 | |
| TIGR01304 | 369 | TIGR01304, IMP_DH_rel_2, IMP dehydrogenase family | 8e-06 | |
| COG0167 | 310 | COG0167, PyrD, Dihydroorotate dehydrogenase [Nucle | 2e-05 | |
| PRK05567 | 486 | PRK05567, PRK05567, inosine 5'-monophosphate dehyd | 3e-05 | |
| PRK08649 | 368 | PRK08649, PRK08649, inosine 5-monophosphate dehydr | 4e-05 | |
| PLN02826 | 409 | PLN02826, PLN02826, dihydroorotate dehydrogenase | 7e-05 | |
| PTZ00314 | 495 | PTZ00314, PTZ00314, inosine-5'-monophosphate dehyd | 8e-05 | |
| COG2070 | 336 | COG2070, COG2070, Dioxygenases related to 2-nitrop | 1e-04 | |
| COG0069 | 485 | COG0069, GltB, Glutamate synthase domain 2 [Amino | 2e-04 | |
| pfam01645 | 367 | pfam01645, Glu_synthase, Conserved region in gluta | 2e-04 | |
| pfam00478 | 467 | pfam00478, IMPDH, IMP dehydrogenase / GMP reductas | 3e-04 | |
| pfam03060 | 329 | pfam03060, NMO, Nitronate monooxygenase | 4e-04 | |
| COG0042 | 323 | COG0042, COG0042, tRNA-dihydrouridine synthase [Tr | 9e-04 | |
| PRK05437 | 352 | PRK05437, PRK05437, isopentenyl pyrophosphate isom | 0.002 | |
| cd02801 | 231 | cd02801, DUS_like_FMN, Dihydrouridine synthase-lik | 0.003 |
| >gnl|CDD|166134 PLN02493, PLN02493, probable peroxisomal (S)-2-hydroxy-acid oxidase | Back alignment and domain information |
|---|
Score = 584 bits (1507), Expect = 0.0
Identities = 309/368 (83%), Positives = 328/368 (89%), Gaps = 28/368 (7%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITNV EY+AIAK+KLPKMV+DYYASGAEDQWTLQENRNAF+RILFRPRILIDVSKIDM
Sbjct: 2 EITNVTEYDAIAKQKLPKMVYDYYASGAEDQWTLQENRNAFARILFRPRILIDVSKIDMT 61
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM------------------ 104
TTVLGFKISMPIM+APTAMQKMAHP+GEYATARAASAAGTIM
Sbjct: 62 TTVLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 121
Query: 105 --------VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 156
VYK+RNVV QLVRRAERAGFKAIALTVDTPRLGRRE+DIKNRFTLPP LTLK
Sbjct: 122 GIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLK 181
Query: 157 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIA 216
NF+GLDLGKMDEANDSGLA+YVAGQIDR+LSWKDV+WLQTITKLPILVKGVLT EDARIA
Sbjct: 182 NFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDVQWLQTITKLPILVKGVLTGEDARIA 241
Query: 217 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 276
+QAGAAGIIVSNHGARQLDYVPATI ALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG
Sbjct: 242 IQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 301
Query: 277 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDAS 336
ASGIFIGRPVV+SLAAEGE GVR+VL+MLR+EFEL MALSGCRSLKEI+R+HI TEWD
Sbjct: 302 ASGIFIGRPVVFSLAAEGEAGVRKVLQMLRDEFELTMALSGCRSLKEISRNHITTEWDT- 360
Query: 337 LPRPVPRL 344
PRP RL
Sbjct: 361 -PRPSARL 367
|
Length = 367 |
| >gnl|CDD|166620 PLN02979, PLN02979, glycolate oxidase | Back alignment and domain information |
|---|
Score = 530 bits (1367), Expect = 0.0
Identities = 269/323 (83%), Positives = 284/323 (87%), Gaps = 28/323 (8%)
Query: 48 FRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM--- 104
FRPRILIDVSKIDM TTVLGFKISMPIM+APTAMQKMAHP+GEYATARAASAAGTIM
Sbjct: 46 FRPRILIDVSKIDMTTTVLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLS 105
Query: 105 -----------------------VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREA 141
VYK+RNVV QLVRRAERAGFKAIALTVDTPRLGRRE+
Sbjct: 106 SWATSSVEEVASTGPGIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRES 165
Query: 142 DIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLP 201
DIKNRFTLPP LTLKNF+GLDLGKMDEANDSGLA+YVAGQIDR+LSWKDV+WLQTITKLP
Sbjct: 166 DIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDVQWLQTITKLP 225
Query: 202 ILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 261
ILVKGVLT EDARIA+QAGAAGIIVSNHGARQLDYVPATI ALEEVVKATQGRIPVFLDG
Sbjct: 226 ILVKGVLTGEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDG 285
Query: 262 GVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSL 321
GVRRGTDVFKALALGASGIFIGRPVV+SLAAEGE GVR+VL+MLR+EFEL MALSGCRSL
Sbjct: 286 GVRRGTDVFKALALGASGIFIGRPVVFSLAAEGEAGVRKVLQMLRDEFELTMALSGCRSL 345
Query: 322 KEITRDHIVTEWDASLPRPVPRL 344
KEI+R+HI TEWD PRP RL
Sbjct: 346 KEISRNHITTEWDT--PRPSARL 366
|
Length = 366 |
| >gnl|CDD|215294 PLN02535, PLN02535, glycolate oxidase | Back alignment and domain information |
|---|
Score = 487 bits (1255), Expect = e-174
Identities = 219/360 (60%), Positives = 265/360 (73%), Gaps = 29/360 (8%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
EI NV E++ +AK+ LPKM +D+YA GAEDQ TL+EN AF RI FRPR+L+DVSKID
Sbjct: 2 ADEIVNVNEFQELAKQALPKMYYDFYAGGAEDQHTLKENVQAFRRITFRPRVLVDVSKID 61
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM---------------- 104
M+TT+LG+ IS PIMIAPTAM K+AHPEGE ATARAA+A TIM
Sbjct: 62 MSTTILGYTISAPIMIAPTAMHKLAHPEGEIATARAAAACNTIMVLSFMASCTVEEVASS 121
Query: 105 ----------VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT 154
VYK R++ AQLV+RAE+ G+KAI LT D PRLGRREADIKN+ P
Sbjct: 122 CNAVRFLQLYVYKRRDIAAQLVQRAEKNGYKAIVLTADVPRLGRREADIKNKMISP---Q 178
Query: 155 LKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDAR 214
LKNF+GL ++ SGL A+ + D SLSWKD++WL++IT LPIL+KGVLT EDA
Sbjct: 179 LKNFEGLLSTEVVSDKGSGLEAFASETFDASLSWKDIEWLRSITNLPILIKGVLTREDAI 238
Query: 215 IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 274
AV+ G AGIIVSNHGARQLDY PATI LEEVV+A GR+PV LDGGVRRGTDVFKALA
Sbjct: 239 KAVEVGVAGIIVSNHGARQLDYSPATISVLEEVVQAVGGRVPVLLDGGVRRGTDVFKALA 298
Query: 275 LGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 334
LGA + +GRPV+Y LAA+GE GVR+V+EML++E E+ MALSGC S+K+ITR H+ TE +
Sbjct: 299 LGAQAVLVGRPVIYGLAAKGEDGVRKVIEMLKDELEITMALSGCPSVKDITRSHVRTERE 358
|
Length = 364 |
| >gnl|CDD|216281 pfam01070, FMN_dh, FMN-dependent dehydrogenase | Back alignment and domain information |
|---|
Score = 416 bits (1072), Expect = e-147
Identities = 156/344 (45%), Positives = 198/344 (57%), Gaps = 68/344 (19%)
Query: 14 AKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMP 73
A+ +LPK FDY GA D+ TL+ NR AF RI RPR+L DVS D++TT+LG ++S+P
Sbjct: 1 ARRRLPKFAFDYIDGGAGDEVTLRRNRAAFDRIRLRPRVLRDVSDRDLSTTLLGQRLSLP 60
Query: 74 IMIAPTAMQKMAHPEGEYATARAASAAGTIM--------------------------VYK 107
IAPT MQ +AHP+GE A ARAA+AAG V K
Sbjct: 61 FGIAPTGMQGLAHPDGELALARAAAAAGIPFVLSTVSSTSLEEVAAAAGGPLWFQLYVPK 120
Query: 108 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMD 167
DR + L+ RAE AG+KA+ LTVDTP LG RE D++
Sbjct: 121 DRELTEDLLERAEAAGYKALVLTVDTPVLGNRERDLR----------------------- 157
Query: 168 EANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVS 227
+W D+ WL+ K P++VKG+L+ EDA+ AV+AG GI+VS
Sbjct: 158 -------------------TWDDLAWLRDQWKGPLVVKGILSPEDAKRAVEAGVDGIVVS 198
Query: 228 NHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 287
NHG RQLD PATI AL E+V A GRIPV +DGG+RRGTDV KALALGA + +GRP +
Sbjct: 199 NHGGRQLDGAPATIDALPEIVAAVGGRIPVLVDGGIRRGTDVLKALALGADAVLLGRPFL 258
Query: 288 YSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVT 331
Y LAA GE GV LE+LR+E E MAL GC S+ ++T +
Sbjct: 259 YGLAAGGEAGVAHALEILRDELERTMALLGCTSIADLTPSLLRR 302
|
Length = 302 |
| >gnl|CDD|239203 cd02809, alpha_hydroxyacid_oxid_FMN, Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes | Back alignment and domain information |
|---|
Score = 415 bits (1070), Expect = e-147
Identities = 163/344 (47%), Positives = 200/344 (58%), Gaps = 72/344 (20%)
Query: 9 EYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGF 68
+ A+A+ +LPK VFDY GA D+ TL+ NR AF RI RPR+L DVSK D +TT+LG
Sbjct: 2 DLRALARRRLPKAVFDYIDGGAGDEVTLRRNRAAFDRIRLRPRVLRDVSKRDTSTTLLGQ 61
Query: 69 KISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMV----------------------- 105
K++MP IAPT +Q +AHP+GE ATARAA+AAG
Sbjct: 62 KLAMPFGIAPTGLQGLAHPDGELATARAAAAAGIPFTLSTVSTTSLEEVAAAAPGPRWFQ 121
Query: 106 ---YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLD 162
+DR + L+RRAE AG+KA+ LTVDTP LGRR
Sbjct: 122 LYVPRDREITEDLLRRAEAAGYKALVLTVDTPVLGRR----------------------- 158
Query: 163 LGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAA 222
L+W D+ WL++ K P+++KG+LT EDA AV AGA
Sbjct: 159 -----------------------LTWDDLAWLRSQWKGPLILKGILTPEDALRAVDAGAD 195
Query: 223 GIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 282
GI+VSNHG RQLD PATI AL E+V A GRI V LDGG+RRGTDV KALALGA + I
Sbjct: 196 GIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALALGADAVLI 255
Query: 283 GRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITR 326
GRP +Y LAA GE GV VLE+LR+E E AMAL GC SL ++
Sbjct: 256 GRPFLYGLAAGGEAGVAHVLEILRDELERAMALLGCASLADLDP 299
|
This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. Length = 299 |
| >gnl|CDD|239238 cd02922, FCB2_FMN, Flavocytochrome b2 (FCB2) FMN-binding domain | Back alignment and domain information |
|---|
Score = 366 bits (942), Expect = e-126
Identities = 151/347 (43%), Positives = 208/347 (59%), Gaps = 38/347 (10%)
Query: 9 EYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGF 68
++EA AK+ L K + YY+SGA+D+ TL+EN AF RI FRPR+L DV K+D +TT+LG
Sbjct: 2 DFEAAAKKYLSKKAWAYYSSGADDEITLRENLEAFQRIRFRPRVLRDVEKVDTSTTILGH 61
Query: 69 KISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM------------------------ 104
K+S+P I+P A+ K+AHP+GE ARAA G +
Sbjct: 62 KVSLPFFISPAALAKLAHPDGELNLARAAGKHGILQMISTNASCSLEEIVDARPPDQPLF 121
Query: 105 ----VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQG 160
V KDR +L++RAE+ G KAI LTVD P LG+RE D + +
Sbjct: 122 FQLYVNKDRTKTEELLKRAEKLGAKAIFLTVDAPVLGKRERDERLKAEEAV-------SD 174
Query: 161 LDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAG 220
GK +A G ++G ID +L+W D+KWL+ TKLPI++KGV T EDA +A + G
Sbjct: 175 GPAGKKTKAKGGGAGRAMSGFIDPTLTWDDIKWLRKHTKLPIVLKGVQTVEDAVLAAEYG 234
Query: 221 AAGIIVSNHGARQLDYVPATIMALEEVVK---ATQGRIPVFLDGGVRRGTDVFKALALGA 277
GI++SNHG RQLD PA I L E+ K +I V++DGGVRRGTDV KAL LGA
Sbjct: 235 VDGIVLSNHGGRQLDTAPAPIEVLLEIRKHCPEVFDKIEVYVDGGVRRGTDVLKALCLGA 294
Query: 278 SGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEI 324
+ +GRP +Y+L+A GE+GV + +++L++E E M L G SL ++
Sbjct: 295 KAVGLGRPFLYALSAYGEEGVEKAIQILKDEIETTMRLLGVTSLDQL 341
|
FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit. Length = 344 |
| >gnl|CDD|224223 COG1304, idi, Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Score = 336 bits (864), Expect = e-114
Identities = 146/352 (41%), Positives = 193/352 (54%), Gaps = 31/352 (8%)
Query: 7 VMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVL 66
V + A+ +LPK F Y GAED+ TL+ NR AF I RPR+L +V ID++TT L
Sbjct: 1 VADLRRAAQRRLPK-AFHYIDGGAEDEVTLRRNREAFEDIALRPRVLPEVDDIDLSTTFL 59
Query: 67 GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM---------------------- 104
G K+S PI+IAP +AHPEGE A+ A+AAG
Sbjct: 60 GQKLSAPIIIAPMTGGGLAHPEGEVINAKLAAAAGEPFILSTVGSQRIEEVAAAPPFQLY 119
Query: 105 VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLG 164
KDR LV RA AG K + LTVD+P G RE D N + P N L
Sbjct: 120 FSKDREFAPNLVDRAANAGAKQLVLTVDSPVGGERERDAVNGISAPALAIHLNV--LQEA 177
Query: 165 KMDEANDSG------LAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQ 218
E + G +A YV+ +S +D + P+++KG+L EDA A
Sbjct: 178 TQPEGDRDGKGGLDSIAEYVSALSVPVISKEDGAGISKEWAGPLVLKGILAPEDAAGAGG 237
Query: 219 AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGAS 278
GA GI VSNHG RQLD+ +T +L E+V+A RI V DGG+R G DV KALALGA
Sbjct: 238 TGADGIEVSNHGGRQLDWGISTADSLPEIVEAVGDRIEVIADGGIRSGLDVAKALALGAD 297
Query: 279 GIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIV 330
+ IGRP +Y LAA GE GV RVLE++R+E ++AMAL+G ++++E+ R +V
Sbjct: 298 AVGIGRPFLYGLAAGGEAGVERVLEIIRKELKIAMALTGAKNIEELKRVPLV 349
|
Length = 360 |
| >gnl|CDD|239448 cd03332, LMO_FMN, L-Lactate 2-monooxygenase (LMO) FMN-binding domain | Back alignment and domain information |
|---|
Score = 310 bits (796), Expect = e-104
Identities = 138/367 (37%), Positives = 203/367 (55%), Gaps = 44/367 (11%)
Query: 5 TNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTT 64
+ EA+A+E L F Y A GA + T + NR+AFSR PR+L V++ D++
Sbjct: 19 VDPERLEALAREALSPGAFAYVAGGAGSESTARANRDAFSRWRIVPRMLRGVTERDLSVE 78
Query: 65 VLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMVY------------------ 106
+ G ++ P+++AP +Q++ HP+ E ATARAA+ G +
Sbjct: 79 LFGRTLAAPLLLAPIGVQELFHPDAELATARAAAELGVPYILSTASSSSIEDVAAAAGDA 138
Query: 107 ---------KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT--- 154
KD ++ L+RRAE+AG++ + +T+DT LG R D+ + PFL
Sbjct: 139 PRWFQLYWPKDDDLTESLLRRAEKAGYRVLVVTLDTWSLGWRPRDLDLGYL--PFLRGIG 196
Query: 155 LKNF-------QGLD--LGKMDEANDSGLAA---YVAGQIDRSLSWKDVKWLQTITKLPI 202
+ N+ + L +G+ EA AA +V+ SL+W+D+ +L+ T LPI
Sbjct: 197 IANYFSDPVFRKKLAEPVGEDPEAPPPMEAAVARFVSVFSGPSLTWEDLAFLREWTDLPI 256
Query: 203 LVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 262
++KG+L +DAR AV+AG G++VSNHG RQ+D A + AL E+V+A R+ V D G
Sbjct: 257 VLKGILHPDDARRAVEAGVDGVVVSNHGGRQVDGSIAALDALPEIVEAVGDRLTVLFDSG 316
Query: 263 VRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLK 322
VR G D+ KALALGA + IGRP Y LA GE GV VL L E +L M L+G RS+
Sbjct: 317 VRTGADIMKALALGAKAVLIGRPYAYGLALGGEDGVEHVLRNLLAELDLTMGLAGIRSIA 376
Query: 323 EITRDHI 329
E+TRD +
Sbjct: 377 ELTRDAL 383
|
LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer. Length = 383 |
| >gnl|CDD|240088 cd04737, LOX_like_FMN, L-Lactate oxidase (LOX) FMN-binding domain | Back alignment and domain information |
|---|
Score = 304 bits (780), Expect = e-102
Identities = 138/351 (39%), Positives = 195/351 (55%), Gaps = 33/351 (9%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
+I N+ + EA AK+ +PK F Y A G+ED+WTL+EN AF+ PR+L V D +
Sbjct: 4 DIINLYDLEAEAKKVIPKGAFGYIAGGSEDEWTLRENTRAFNHKQIVPRVLQGVESPDTS 63
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM------------------ 104
T +LG K+ PI++AP A +AH GE ATAR + G++
Sbjct: 64 TELLGIKLKTPIIMAPIAAHGLAHATGEVATARGMAEVGSLFSISTYSNTSLEEIAKASN 123
Query: 105 -------VY--KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTL 155
+Y KD L+ RA+ AG KAI LT D G READI+N+F P +
Sbjct: 124 GGPKWFQLYMSKDDGFNRSLLDRAKAAGAKAIILTADATVGGNREADIRNKFQFP--FGM 181
Query: 156 KNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARI 215
N G S + + LS D++++ I+ LP++VKG+ + EDA +
Sbjct: 182 PNLNHFSEGTGKGKGIS----EIYAAAKQKLSPADIEFIAKISGLPVIVKGIQSPEDADV 237
Query: 216 AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL 275
A+ AGA GI VSNHG RQLD PA+ +L E+ +A R+P+ D GVRRG VFKALA
Sbjct: 238 AINAGADGIWVSNHGGRQLDGGPASFDSLPEIAEAVNHRVPIIFDSGVRRGEHVFKALAS 297
Query: 276 GASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITR 326
GA + +GRPV+Y LA G +GV VLE L +E ++ M L+G R+++++ R
Sbjct: 298 GADAVAVGRPVLYGLALGGAQGVASVLEHLNKELKIVMQLAGTRTIEDVKR 348
|
LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). Length = 351 |
| >gnl|CDD|240087 cd04736, MDH_FMN, Mandelate dehydrogenase (MDH)-like FMN-binding domain | Back alignment and domain information |
|---|
Score = 270 bits (692), Expect = 9e-89
Identities = 142/362 (39%), Positives = 206/362 (56%), Gaps = 46/362 (12%)
Query: 9 EYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGF 68
+Y ++AK++LP+MVFDY GAED+ L+ NR+AF R F PR L+DVSK D++ ++ G
Sbjct: 2 DYRSLAKKRLPRMVFDYLEGGAEDEKGLRHNRDAFDRWRFIPRRLVDVSKRDISASLFGK 61
Query: 69 KISMPIMIAPTAMQKMAHPEGEYATARAASAAG--------TIMVYKD------------ 108
S P++IAPT + P G+ A ARAA+ AG + M +D
Sbjct: 62 VWSAPLVIAPTGLNGAFWPNGDLALARAAAKAGIPFVLSTASNMSIEDVARQADGDLWFQ 121
Query: 109 -----RNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLP------------- 150
R + LV+RA AG+ + LT D G RE D++N F +P
Sbjct: 122 LYVVHRELAELLVKRALAAGYTTLVLTTDVAVNGYRERDLRNGFAIPFRYTPRVLLDGIL 181
Query: 151 -PFLTLKNFQGLDLGK----MDEANDSGL-AAYVAGQIDRSLSWKDVKWLQTITKLPILV 204
P L+ + D+A D + AA ++ Q+D S +W+D++WL+ + +LV
Sbjct: 182 HPRWLLRFLRNGMPQLANFASDDAIDVEVQAALMSRQMDASFNWQDLRWLRDLWPHKLLV 241
Query: 205 KGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 264
KG++TAEDA+ ++ GA G+I+SNHG RQLD A I AL E+V AT PV +D G+R
Sbjct: 242 KGIVTAEDAKRCIELGADGVILSNHGGRQLDDAIAPIEALAEIVAATY--KPVLIDSGIR 299
Query: 265 RGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEI 324
RG+D+ KALALGA+ + +GR +Y LAA GE GV VL +L+EE + +AL GC + +
Sbjct: 300 RGSDIVKALALGANAVLLGRATLYGLAARGEAGVSEVLRLLKEEIDRTLALIGCPDIASL 359
Query: 325 TR 326
T
Sbjct: 360 TP 361
|
MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). Length = 361 |
| >gnl|CDD|183033 PRK11197, lldD, L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 238 bits (610), Expect = 3e-76
Identities = 128/374 (34%), Positives = 193/374 (51%), Gaps = 47/374 (12%)
Query: 4 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNT 63
I+ +Y A A+ +LP +F Y GA ++TL+ N + I R R+L D+S + + T
Sbjct: 3 ISAASDYRAAAQRRLPPFLFHYIDGGAYAEYTLRRNVEDLADIALRQRVLKDMSDLSLET 62
Query: 64 TVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGT--------------------- 102
T+ G K+SMP+ +AP + M GE ARAA A G
Sbjct: 63 TLFGEKLSMPVALAPVGLTGMYARRGEVQAARAADAKGIPFTLSTVSVCPIEEVAPAIKR 122
Query: 103 -----IMVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN 157
+ V +DR + + RA+ AG + TVD P G R D + + P +
Sbjct: 123 PMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPVPGARYRDAHSGMSGPNAAMRRY 182
Query: 158 FQGL-------DLGKMDEAND-----------SGLAAYVA---GQIDRSLSWKDVKWLQT 196
Q + D+G +D +GL Y+ D S+SWKD++W++
Sbjct: 183 LQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWIRD 242
Query: 197 ITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIP 256
P+++KG+L EDAR AV+ GA GI+VSNHG RQLD V ++ AL + A +G I
Sbjct: 243 FWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIT 302
Query: 257 VFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALS 316
+ D G+R G DV + +ALGA + +GR VY+LAA G+ GV +L+++ +E +AM L+
Sbjct: 303 ILADSGIRNGLDVVRMIALGADTVLLGRAFVYALAAAGQAGVANLLDLIEKEMRVAMTLT 362
Query: 317 GCRSLKEITRDHIV 330
G +S+ EITRD +V
Sbjct: 363 GAKSISEITRDSLV 376
|
Length = 381 |
| >gnl|CDD|131755 TIGR02708, L_lactate_ox, L-lactate oxidase | Back alignment and domain information |
|---|
Score = 232 bits (592), Expect = 9e-74
Identities = 127/354 (35%), Positives = 182/354 (51%), Gaps = 44/354 (12%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
+ N + E +A++ +PK F Y ASGA D +TL+EN AF+ L P +L DV
Sbjct: 12 DFINTYDLEEMAQQVIPKGAFGYIASGAGDTFTLRENIRAFNHKLIVPHLLQDVENPSTE 71
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM------------------ 104
LG K+ P ++AP A K+A+ +GE ATAR S G+I
Sbjct: 72 IEFLGHKLKSPFIMAPVAAHKLANEQGEVATARGVSEFGSIYTTSSYSTADLPEISEALN 131
Query: 105 -------VY--KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLP---PF 152
Y KD + ++ R + G KAI LT D G RE D++N F P P
Sbjct: 132 GTPHWFQFYMSKDDGINRDIMDRVKADGAKAIVLTADATVGGNREVDVRNGFVFPVGMPI 191
Query: 153 LT--LKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTA 210
+ L G + V + LS +D++ + + LP+ VKG
Sbjct: 192 VQEYLPTGAGKSMD------------NVYKSAKQKLSPRDIEEIAGYSGLPVYVKGPQCP 239
Query: 211 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVF 270
EDA A++AGA+GI V+NHG RQLD PA +L+EV +A R+P+ D GVRRG VF
Sbjct: 240 EDADRALKAGASGIWVTNHGGRQLDGGPAAFDSLQEVAEAVDKRVPIVFDSGVRRGQHVF 299
Query: 271 KALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEI 324
KALA GA + +GRPV+Y LA G +G R+V E L +E + M L+G ++++++
Sbjct: 300 KALASGADLVALGRPVIYGLALGGSQGARQVFEYLNKELKRVMQLTGTQTIEDV 353
|
Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence [Energy metabolism, Other]. Length = 367 |
| >gnl|CDD|188481 TIGR03966, actino_HemFlav, heme/flavin dehydrogenase, mycofactocin system | Back alignment and domain information |
|---|
Score = 216 bits (551), Expect = 2e-67
Identities = 125/373 (33%), Positives = 190/373 (50%), Gaps = 51/373 (13%)
Query: 7 VMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVL 66
V E + A+++LP+ V+ +G E TL +N AF + FRP + K +++TTV+
Sbjct: 8 VAEAQRRARKRLPRSVYAALIAGTEKGVTLADNVAAFDELGFRPHVAGAPPKRELSTTVM 67
Query: 67 GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM---------------------- 104
G +IS P++I+PT +Q + HP+GE A ARAA+A GT M
Sbjct: 68 GQEISFPVLISPTGVQAV-HPDGEVAVARAAAARGTAMGLSSFASKPVEEVVAANPKTFF 126
Query: 105 -VY--KDRNVVAQLVRRAERAGFKAIALTVD----------TPRLGRREADIKNRFTLPP 151
+Y R+ + + RA AG K + LT+D +P + + D++ P
Sbjct: 127 QIYWVGSRDDILARLERARAAGAKGLILTLDWSFASRRDWGSPEIPEK-IDLRTMLRFAP 185
Query: 152 FLTLK--------------NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTI 197
+ ++ + +L E + AY +W+DV WL+
Sbjct: 186 EVLVRPGWLLRYLRSGRIPDLTVPNLALRGETPPTFFGAYGEWMGTPPPTWEDVAWLREQ 245
Query: 198 TKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 257
P ++KG+ +DAR AV AGA I VSNHG LD PA I AL + +A ++ V
Sbjct: 246 WGGPFMLKGITRPDDARRAVDAGATAISVSNHGGNNLDGTPAAIRALPAIAEAVGDQVEV 305
Query: 258 FLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSG 317
LDGG+RRG+DV KALALGA + IGR ++ LAA GE GV VL++LR+ + A+ G
Sbjct: 306 LLDGGIRRGSDVVKALALGARAVMIGRAYLWGLAANGEAGVENVLDILRQGIDSALLGLG 365
Query: 318 CRSLKEITRDHIV 330
S+ E++R+ +V
Sbjct: 366 KASVHELSREDLV 378
|
Members of this protein family possess an N-terminal heme-binding domain and C-terminal flavodehydrogenase domain, and share homology to yeast flavocytochrome b2, to E. coli L-lactate dehydrogenase [cytochrome], to (S)-mandelate dehydrogenase, etc. This enzyme appears only in the context of the mycofactocin system. Interestingly, it is absent from the four species detected so far with mycofactocin but without an F420 biosynthesis system. Length = 385 |
| >gnl|CDD|233750 TIGR02151, IPP_isom_2, isopentenyl-diphosphate delta-isomerase, type 2 | Back alignment and domain information |
|---|
Score = 96.9 bits (242), Expect = 7e-23
Identities = 85/342 (24%), Positives = 136/342 (39%), Gaps = 62/342 (18%)
Query: 30 AEDQWTLQENRNAFSRILFRPRIL--IDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHP 87
Q F I L I++ ID+ T LG ++ P I AM
Sbjct: 10 CLKQNVEYGGSTGFDDITLIHNALPEINLDDIDLTTEFLGKRLKAPFYI--NAMTG-GSE 66
Query: 88 EG---EYATARAASAAGTIMVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREAD-- 142
E ARAA G M + A L F+ + R EA
Sbjct: 67 EAGKINRNLARAARELGIPMGVGSQR--AALKDPETADTFEVV----------REEAPNG 114
Query: 143 --IKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYV-----AGQIDRSLSWKDVKWLQ 195
I N P + + + M EA+ LA ++ Q + ++K WL+
Sbjct: 115 PLIAN-IGAPQLVEGGPEEAQEAIDMIEAD--ALAIHLNVLQELVQPEGDRNFKG--WLE 169
Query: 196 TITKL------PILVKGV---LTAEDARIAVQAGAAGIIVSNHG---------ARQLDYV 237
I ++ P++VK V ++ E A++ AG + I V+ G R
Sbjct: 170 KIAEICSQLSVPVIVKEVGFGISKEVAKLLADAGVSAIDVAGAGGTSWAQVENYRAKGSN 229
Query: 238 PA---------TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 288
A T +L EV ++ P+ GG+R G DV KA+ALGA + + RP +
Sbjct: 230 LASFFNDWGIPTAASLLEV-RSDAPDAPIIASGGLRTGLDVAKAIALGADAVGMARPFLK 288
Query: 289 SLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIV 330
+ EGE+ V +E++ EE ++AM L+G +++ E+ + +V
Sbjct: 289 AALDEGEEAVIEEIELIIEELKVAMFLTGAKTIAELKKVPLV 330
|
Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 333 |
| >gnl|CDD|235465 PRK05437, PRK05437, isopentenyl pyrophosphate isomerase; Provisional | Back alignment and domain information |
|---|
Score = 78.7 bits (195), Expect = 2e-16
Identities = 45/161 (27%), Positives = 75/161 (46%), Gaps = 28/161 (17%)
Query: 193 WLQTITKL------PILVKGV---LTAEDARIAVQAGAAGIIVSNHG---------ARQL 234
WL I ++ P++VK V ++ E A+ AG I V+ G R
Sbjct: 174 WLDNIAEIVSALPVPVIVKEVGFGISKETAKRLADAGVKAIDVAGAGGTSWAAIENYRAR 233
Query: 235 DYVPA---------TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 285
D A T +L E ++ +P+ GG+R G D+ KALALGA + + P
Sbjct: 234 DDRLASYFADWGIPTAQSLLEA-RSLLPDLPIIASGGIRNGLDIAKALALGADAVGMAGP 292
Query: 286 VVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITR 326
+ + GE+ V ++E EE ++AM L+G +++ E+ +
Sbjct: 293 FLKAALEGGEEAVIELIEQWIEELKIAMFLTGAKNIAELRK 333
|
Length = 352 |
| >gnl|CDD|239205 cd02811, IDI-2_FMN, Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain | Back alignment and domain information |
|---|
Score = 71.4 bits (176), Expect = 5e-14
Identities = 45/151 (29%), Positives = 70/151 (46%), Gaps = 25/151 (16%)
Query: 199 KLPILVKGV---LTAEDARIAVQAGAAGIIVSNHG---------ARQLDYVPA------- 239
+P++VK V ++ E A+ AG I V+ G R D
Sbjct: 178 SVPVIVKEVGFGISRETAKRLADAGVKAIDVAGAGGTSWARVENYRAKDSDQRLAEYFAD 237
Query: 240 ----TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGE 295
T +L EV ++ +P+ GG+R G D+ KALALGA + + P + A EGE
Sbjct: 238 WGIPTAASLLEV-RSALPDLPLIASGGIRNGLDIAKALALGADLVGMAGPFL-KAALEGE 295
Query: 296 KGVRRVLEMLREEFELAMALSGCRSLKEITR 326
+ V +E + EE AM L+G ++L E+ +
Sbjct: 296 EAVIETIEQIIEELRTAMFLTGAKNLAELKQ 326
|
Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway. Length = 326 |
| >gnl|CDD|240073 cd04722, TIM_phosphate_binding, TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 2e-09
Identities = 44/199 (22%), Positives = 73/199 (36%), Gaps = 20/199 (10%)
Query: 103 IMVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLD 162
++ +L + A AG AI + + E D K T G+
Sbjct: 5 LLAGGPSGDPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAET-DLPLGVQ 63
Query: 163 LGKMD-------------EANDSGLAAYVAGQIDRSLSWKDVKWL-QTITKLPILVKGVL 208
L D A G+ + A + ++ L + + + ++VK
Sbjct: 64 LAINDAAAAVDIAAAAARAAGADGVEIHGAVGYLAREDLELIRELREAVPDVKVVVKLSP 123
Query: 209 TAEDARI-AVQAGAAGIIVSNHGARQL--DYVPATIMALEEVVKATQGRIPVFLDGGVRR 265
T E A A +AG + + N G D VP + L + + ++PV GG+
Sbjct: 124 TGELAAAAAEEAGVDEVGLGNGGGGGGGRDAVPIADLLLILAKRGS--KVPVIAGGGIND 181
Query: 266 GTDVFKALALGASGIFIGR 284
D +ALALGA G+ +G
Sbjct: 182 PEDAAEALALGADGVIVGS 200
|
Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN. Length = 200 |
| >gnl|CDD|239202 cd02808, GltS_FMN, Glutamate synthase (GltS) FMN-binding domain | Back alignment and domain information |
|---|
Score = 57.9 bits (141), Expect = 2e-09
Identities = 53/191 (27%), Positives = 71/191 (37%), Gaps = 54/191 (28%)
Query: 191 VKWLQTIT-KLPILVK---GVLTAEDARIAVQAGAAGIIVSNH----GARQL---DYV-- 237
++ L+ T PI VK G + A AGA I + GA L D+V
Sbjct: 205 IEDLREATGGKPIGVKLVAGHGEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGL 264
Query: 238 PATIMALEEVVKATQG-----RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAA 292
P T + L +A R+ + GG+R G DV KALALGA + IG +L A
Sbjct: 265 P-TELGLARAHQALVKNGLRDRVSLIASGGLRTGADVAKALALGADAVGIGTA---ALIA 320
Query: 293 EG-----------------------------EKGVRRV---LEMLREEFELAMALSGCRS 320
G E RV L+ L EE A G RS
Sbjct: 321 LGCIQARKCHTNTCPVGVATQDPELRRRLDVEGKAERVANYLKSLAEELRELAAALGKRS 380
Query: 321 LKEITRDHIVT 331
L+ + R ++
Sbjct: 381 LELLGRSDLLA 391
|
GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor. Length = 392 |
| >gnl|CDD|240081 cd04730, NPD_like, 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites | Back alignment and domain information |
|---|
Score = 50.9 bits (123), Expect = 2e-07
Identities = 28/83 (33%), Positives = 36/83 (43%), Gaps = 12/83 (14%)
Query: 207 VLTAEDARIAVQAGAAGIIVSN-----HGARQLDYVPATIMAL-EEVVKATQGRIPVFLD 260
V + E+AR A AGA ++ H AL EV A IPV
Sbjct: 109 VTSVEEARKAEAAGADALVAQGAEAGGHRGTFD----IGTFALVPEVRDAV--DIPVIAA 162
Query: 261 GGVRRGTDVFKALALGASGIFIG 283
GG+ G + ALALGA G+ +G
Sbjct: 163 GGIADGRGIAAALALGADGVQMG 185
|
NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. Length = 236 |
| >gnl|CDD|238223 cd00381, IMPDH, IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 1e-06
Identities = 34/110 (30%), Positives = 52/110 (47%), Gaps = 22/110 (20%)
Query: 191 VKWL-QTITKLPILVKGVLTAEDARIAVQAGAAGIIV-----SNHGAR--------QLDY 236
+K++ + + ++ V+TAE AR + AGA G+ V S R Q
Sbjct: 126 IKFIKKKYPNVDVIAGNVVTAEAARDLIDAGADGVKVGIGPGSICTTRIVTGVGVPQ--- 182
Query: 237 VPATIMALEEVVKATQGR-IPVFLDGGVRRGTDVFKALALGASGIFIGRP 285
AT A+ +V A + +PV DGG+R D+ KALA GA + +G
Sbjct: 183 --AT--AVADVAAAARDYGVPVIADGGIRTSGDIVKALAAGADAVMLGSL 228
|
IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents. Length = 325 |
| >gnl|CDD|233350 TIGR01302, IMP_dehydrog, inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 3e-06
Identities = 37/119 (31%), Positives = 52/119 (43%), Gaps = 28/119 (23%)
Query: 180 GQIDRSLSWKDVKWL-QTITKLPILVKGVLTAEDARIAVQAGAAGI-------------I 225
ID +K + +T L I+ V TAE A+ + AGA G+ I
Sbjct: 251 YVIDS------IKEIKKTYPDLDIIAGNVATAEQAKALIDAGADGLRVGIGPGSICTTRI 304
Query: 226 VSNHGARQLDYVPATIMALEEVVKATQGR-IPVFLDGGVRRGTDVFKALALGASGIFIG 283
V+ G Q I A+ +V + IPV DGG+R D+ KALA GA + +G
Sbjct: 305 VAGVGVPQ-------ITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKALAAGADAVMLG 356
|
This model describes IMP dehydrogenase, an enzyme of GMP biosynthesis. This form contains two CBS domains. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 450 |
| >gnl|CDD|233351 TIGR01304, IMP_DH_rel_2, IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 8e-06
Identities = 32/108 (29%), Positives = 48/108 (44%), Gaps = 12/108 (11%)
Query: 200 LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYV-------PATIM----ALEEVV 248
+P++ GV A ++ GAAG+IV GA V I A + +
Sbjct: 189 VPVIAGGVNDYTTALHLMRTGAAGVIVGPGGANTTRLVLGIEVPMATAIADVAAARRDYL 248
Query: 249 KATQGR-IPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGE 295
T GR + V DGG+ D+ KA+A GA + +G P+ + A G
Sbjct: 249 DETGGRYVHVIADGGIETSGDLVKAIACGADAVVLGSPLARAAEAPGR 296
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302 [Unknown function, General]. Length = 369 |
| >gnl|CDD|223245 COG0167, PyrD, Dihydroorotate dehydrogenase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 2e-05
Identities = 38/171 (22%), Positives = 67/171 (39%), Gaps = 37/171 (21%)
Query: 181 QIDRSLSWKDVKWLQTITKLPILVKGVLTAED------ARIAVQAGAAGIIVSNHGARQL 234
D L K ++ ++ TK+P+ VK L A+ A +AGA G+I N +
Sbjct: 143 GQDPELLEKLLEAVKAATKVPVFVK--LAPNITDIDEIAKAAEEAGADGLIAINTTKSGM 200
Query: 235 DYVPATIM---------------------ALEEVVKATQGRIPVFLDGGVRRGTDVFKAL 273
T + E+ K G IP+ GG+ G D + +
Sbjct: 201 KIDLETKKPVLANETGGLSGPPLKPIALRVVAELYKRLGGDIPIIGVGGIETGEDALEFI 260
Query: 274 ALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEI 324
GAS + +G ++Y +G V+ +++ L + G S+++I
Sbjct: 261 LAGASAVQVGTALIY----KGPGIVKEIIKGLAR----WLEEKGFESIQDI 303
|
Length = 310 |
| >gnl|CDD|235507 PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 3e-05
Identities = 34/108 (31%), Positives = 50/108 (46%), Gaps = 22/108 (20%)
Query: 191 VKWL-QTITKLPILVKGVLTAEDARIAVQAGAAGI-------------IVSNHGARQLDY 236
V+ + + I+ V TAE AR ++AGA + IV+ G Q
Sbjct: 260 VREIKAKYPDVQIIAGNVATAEAARALIEAGADAVKVGIGPGSICTTRIVAGVGVPQ--- 316
Query: 237 VPATIMALEEVVKATQGR-IPVFLDGGVRRGTDVFKALALGASGIFIG 283
I A+ + +A + IPV DGG+R D+ KALA GAS + +G
Sbjct: 317 ----ITAIADAAEAAKKYGIPVIADGGIRYSGDIAKALAAGASAVMLG 360
|
Length = 486 |
| >gnl|CDD|236322 PRK08649, PRK08649, inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 4e-05
Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 16/109 (14%)
Query: 201 PILVKGVLTAEDARIAVQAGAAGIIV--------SNHGARQLDYVP-ATIM-----ALEE 246
P++V G +T A ++ GAAG++V ++ G + VP AT + A +
Sbjct: 189 PVIVGGCVTYTTALHLMRTGAAGVLVGIGPGAACTSRGVLGIG-VPMATAIADVAAARRD 247
Query: 247 VVKATQGR-IPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEG 294
+ T GR + V DGG+ D+ KA+A GA + +G P+ + A G
Sbjct: 248 YLDETGGRYVHVIADGGIGTSGDIAKAIACGADAVMLGSPLARAAEAPG 296
|
Length = 368 |
| >gnl|CDD|178421 PLN02826, PLN02826, dihydroorotate dehydrogenase | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 7e-05
Identities = 44/166 (26%), Positives = 70/166 (42%), Gaps = 35/166 (21%)
Query: 189 KDVKWLQTITKLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIM 242
+D P+LVK L+ ED A +A+ G G+I+SN + D V
Sbjct: 252 RDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVALALGIDGLIISNTTISRPDSVLGHPH 311
Query: 243 A------------------LEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 284
A L E+ + T+G+IP+ GGV G D +K + GAS +
Sbjct: 312 ADEAGGLSGKPLFDLSTEVLREMYRLTRGKIPLVGCGGVSSGEDAYKKIRAGASLV---- 367
Query: 285 PVVYS-LAAEGEKGVRRVLEMLREEFELAMALSGCRSLKE-ITRDH 328
+Y+ A EG + R ++ E + G +S++E + DH
Sbjct: 368 -QLYTAFAYEGPALIPR----IKAELAACLERDGFKSIQEAVGADH 408
|
Length = 409 |
| >gnl|CDD|240355 PTZ00314, PTZ00314, inosine-5'-monophosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 8e-05
Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 22/109 (20%)
Query: 191 VKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGI-------------IVSNHGARQLDY 236
+K L++ + I+ V+TA+ A+ + AGA G+ V G Q
Sbjct: 273 IKKLKSNYPHVDIIAGNVVTADQAKNLIDAGADGLRIGMGSGSICITQEVCAVGRPQAS- 331
Query: 237 VPATIMALEEVVK-ATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 284
A+ V + A + +P DGG++ D+ KALALGA + +G
Sbjct: 332 ------AVYHVARYARERGVPCIADGGIKNSGDICKALALGADCVMLGS 374
|
Length = 495 |
| >gnl|CDD|224981 COG2070, COG2070, Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 1e-04
Identities = 31/82 (37%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 206 GVLTAEDARIAVQAGAAGIIVSNHGA---RQLDYVPATIMAL-EEVVKATQGRIPVFLDG 261
V+T +A A +AGA +I A R + + AL EVV A G IPV G
Sbjct: 133 SVITVREALKAERAGADAVIAQGAEAGGHRGGVDLEVSTFALVPEVVDAVDG-IPVIAAG 191
Query: 262 GVRRGTDVFKALALGASGIFIG 283
G+ G + ALALGA G+ +G
Sbjct: 192 GIADGRGIAAALALGADGVQMG 213
|
Length = 336 |
| >gnl|CDD|223147 COG0069, GltB, Glutamate synthase domain 2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 2e-04
Identities = 49/193 (25%), Positives = 67/193 (34%), Gaps = 60/193 (31%)
Query: 191 VKWLQTITKL-PILVK-----GVLTAEDARIAVQAGAAGIIVSNH----GARQL---DYV 237
+K L+ I VK GV T A +AGA I + GA L D+
Sbjct: 294 IKDLKEANPWAKISVKLVAEHGVGTI--AAGVAKAGADVITIDGADGGTGASPLTSIDHA 351
Query: 238 --PATIMALEEVVKATQG-----RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSL 290
P + L E + ++ + DGG+R G DV KA ALGA + G +L
Sbjct: 352 GIP-WELGLAETHQTLVLNGLRDKVKLIADGGLRTGADVAKAAALGADAVGFGTA---AL 407
Query: 291 AAEG-----------------------------EKGVRRVLE----MLREEFELAMALSG 317
A G E RV+ + E EL +A G
Sbjct: 408 VALGCIMCRVCHTGTCPVGIATQDPELRKRLDVEGKPERVINYFTFVAEELREL-LAALG 466
Query: 318 CRSLKEITRDHIV 330
RSL E+ +
Sbjct: 467 KRSLSELIGRTDL 479
|
Length = 485 |
| >gnl|CDD|110632 pfam01645, Glu_synthase, Conserved region in glutamate synthase | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 2e-04
Identities = 33/108 (30%), Positives = 48/108 (44%), Gaps = 20/108 (18%)
Query: 201 PILVKGVLTAEDARIAVQAGAAG-----IIVSNH----GARQL---DYVPA-TIMALEEV 247
PI VK L + + AG A I++ H GA + +AL EV
Sbjct: 204 PISVK--LVSGHGVGTIAAGVAKAGADIILIDGHDGGTGASPKTSIKHAGLPWELALAEV 261
Query: 248 VKAT-----QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSL 290
+ + R+ + DGG+R G DV KA ALGA ++IG + +L
Sbjct: 262 HQTLVENGLRDRVSLIADGGLRTGADVAKAAALGADAVYIGTAALIAL 309
|
This family represents a region of the glutamate synthase protein. This region is expressed as a separate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster. Length = 367 |
| >gnl|CDD|215936 pfam00478, IMPDH, IMP dehydrogenase / GMP reductase domain | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 3e-04
Identities = 35/109 (32%), Positives = 52/109 (47%), Gaps = 22/109 (20%)
Query: 191 VKWL-QTITKLPILVKGVLTAEDARIAVQAGAAGI-------------IVSNHGARQLDY 236
+KW+ + +L ++ V+TAE AR + AGA + V+ G QL
Sbjct: 255 IKWIKKKYPELDVIAGNVVTAEAARELIDAGADAVKVGIGPGSICTTREVAGVGRPQL-- 312
Query: 237 VPATIMALEEVVKATQGR-IPVFLDGGVRRGTDVFKALALGASGIFIGR 284
A+ EV A + +PV DGG+R D+ KALA GAS + +G
Sbjct: 313 -----TAVYEVADAARKLGVPVIADGGIRYSGDIAKALAAGASAVMLGS 356
|
This family is involved in biosynthesis of guanosine nucleotide. Members of this family contain a TIM barrel structure. In the inosine monophosphate dehydrogenases 2 CBS domains pfam00571 are inserted in the TIM barrel. This family is a member of the common phosphate binding site TIM barrel family. Length = 467 |
| >gnl|CDD|217344 pfam03060, NMO, Nitronate monooxygenase | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 4e-04
Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Query: 202 ILVKGVLTAEDARIAVQAGAAGIIV--SNHGARQLDYVPATIMALEEVVKATQGRIPVFL 259
++ V +A++AR A AGA ++ G +V T L V IPV
Sbjct: 139 KVIPTVSSAKEARKAEAAGADAVVAQGPEAGGHIGTFVGVTTFLLVPTVVDAVD-IPVIA 197
Query: 260 DGGVRRGTDVFKALALGASGIFIG 283
GG+ G + ALALGA G+ IG
Sbjct: 198 AGGIADGRGIAAALALGAEGVQIG 221
|
Nitronate monooxygenase (NMO), formerly referred to as 2-nitropropane dioxygenase (NPD) (EC:1.13.11.32), is an FMN-dependent enzyme that uses molecular oxygen to oxidize (anionic) alkyl nitronates and, in the case of the enzyme from Neurospora crassa, (neutral) nitroalkanes to the corresponding carbonyl compounds and nitrite. Previously classified as 2-nitropropane dioxygenase, but it is now recognized that this was the result of the slow ionization of nitroalkanes to their nitronate (anionic) forms. The enzymes from the fungus Neurospora crassa and the yeast Williopsis saturnus var. mrakii (formerly classified as Hansenula mrakii) contain non-covalently bound FMN as the cofactor. Active towards linear alkyl nitronates of lengths between 2 and 6 carbon atoms and, with lower activity, towards propyl-2-nitronate. The enzyme from N. crassa can also utilize neutral nitroalkanes, but with lower activity. One atom of oxygen is incorporated into the carbonyl group of the aldehyde product. The reaction appears to involve the formation of an enzyme-bound nitronate radical and an a-peroxynitroethane species, which then decomposes, either in the active site of the enzyme or after release, to acetaldehyde and nitrite. Length = 329 |
| >gnl|CDD|223120 COG0042, COG0042, tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 9e-04
Identities = 44/150 (29%), Positives = 65/150 (43%), Gaps = 25/150 (16%)
Query: 199 KLPILVK---GV-----LTAEDARIAVQAGAAGIIVSNHG-ARQLDY-VPATIMALEEVV 248
+P+ VK G L E ARI AGA + V HG R Y PA ++E+
Sbjct: 136 DIPVTVKIRLGWDDDDILALEIARILEDAGADALTV--HGRTRAQGYLGPADWDYIKELK 193
Query: 249 KATQGRIPVFLDGGVRRGTDVFKALAL-GASGIFIGRP----------VVYSLAAEGEK- 296
+A IPV +G ++ D + L GA G+ IGR + Y E
Sbjct: 194 EAVPS-IPVIANGDIKSLEDAKEMLEYTGADGVMIGRGALGNPWLFRQIDYLETGELLPP 252
Query: 297 GVRRVLEMLREEFELAMALSGCRSLKEITR 326
+ VL++LRE EL + G + L+ + +
Sbjct: 253 TLAEVLDILREHLELLLEYYGKKGLRRLRK 282
|
Length = 323 |
| >gnl|CDD|235465 PRK05437, PRK05437, isopentenyl pyrophosphate isomerase; Provisional | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 0.002
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Query: 30 AEDQWTLQENRNAFSRILFRPRIL--IDVSKIDMNTTVLGFKISMPIMIAPTAM 81
A + + F + L +D+ ID++T LG K+S P +I AM
Sbjct: 17 ALKEDVEYKKTTGFDDVRLIHNALPELDLDDIDLSTEFLGKKLSAPFLI--NAM 68
|
Length = 352 |
| >gnl|CDD|239200 cd02801, DUS_like_FMN, Dihydrouridine synthase-like (DUS-like) FMN-binding domain | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 0.003
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 7/75 (9%)
Query: 213 ARIAVQAGAAGIIVSNHG--ARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVF 270
A+ AGA+ + V HG Q PA + E+ +A IPV +G + D
Sbjct: 144 AKALEDAGASALTV--HGRTREQRYSGPADWDYIAEIKEAV--SIPVIANGDIFSLEDAL 199
Query: 271 KALAL-GASGIFIGR 284
+ L G G+ IGR
Sbjct: 200 RCLEQTGVDGVMIGR 214
|
Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present. Length = 231 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 344 | |||
| KOG0538 | 363 | consensus Glycolate oxidase [Energy production and | 100.0 | |
| PLN02493 | 367 | probable peroxisomal (S)-2-hydroxy-acid oxidase | 100.0 | |
| PLN02535 | 364 | glycolate oxidase | 100.0 | |
| PRK11197 | 381 | lldD L-lactate dehydrogenase; Provisional | 100.0 | |
| TIGR02708 | 367 | L_lactate_ox L-lactate oxidase. Members of this pr | 100.0 | |
| cd03332 | 383 | LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-bindin | 100.0 | |
| cd04736 | 361 | MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-bin | 100.0 | |
| PF01070 | 356 | FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR | 100.0 | |
| cd04737 | 351 | LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding d | 100.0 | |
| cd02922 | 344 | FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding dom | 100.0 | |
| PLN02979 | 366 | glycolate oxidase | 100.0 | |
| COG1304 | 360 | idi Isopentenyl diphosphate isomerase (BS_ypgA, MT | 100.0 | |
| cd02809 | 299 | alpha_hydroxyacid_oxid_FMN Family of homologous FM | 100.0 | |
| cd02811 | 326 | IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl di | 100.0 | |
| PRK05437 | 352 | isopentenyl pyrophosphate isomerase; Provisional | 100.0 | |
| TIGR02151 | 333 | IPP_isom_2 isopentenyl-diphosphate delta-isomerase | 100.0 | |
| TIGR01306 | 321 | GMP_reduct_2 guanosine monophosphate reductase, ba | 100.0 | |
| PRK05458 | 326 | guanosine 5'-monophosphate oxidoreductase; Provisi | 99.98 | |
| cd02808 | 392 | GltS_FMN Glutamate synthase (GltS) FMN-binding dom | 99.97 | |
| TIGR01305 | 343 | GMP_reduct_1 guanosine monophosphate reductase, eu | 99.96 | |
| PRK08649 | 368 | inosine 5-monophosphate dehydrogenase; Validated | 99.93 | |
| PRK05096 | 346 | guanosine 5'-monophosphate oxidoreductase; Provisi | 99.92 | |
| cd00381 | 325 | IMPDH IMPDH: The catalytic domain of the inosine m | 99.91 | |
| PF00478 | 352 | IMPDH: IMP dehydrogenase / GMP reductase domain; I | 99.91 | |
| PF01645 | 368 | Glu_synthase: Conserved region in glutamate syntha | 99.91 | |
| TIGR01304 | 369 | IMP_DH_rel_2 IMP dehydrogenase family protein. Thi | 99.9 | |
| PRK06843 | 404 | inosine 5-monophosphate dehydrogenase; Validated | 99.9 | |
| COG0069 | 485 | GltB Glutamate synthase domain 2 [Amino acid trans | 99.87 | |
| PTZ00314 | 495 | inosine-5'-monophosphate dehydrogenase; Provisiona | 99.86 | |
| PRK05567 | 486 | inosine 5'-monophosphate dehydrogenase; Reviewed | 99.86 | |
| TIGR01303 | 475 | IMP_DH_rel_1 IMP dehydrogenase family protein. Thi | 99.85 | |
| TIGR01302 | 450 | IMP_dehydrog inosine-5'-monophosphate dehydrogenas | 99.85 | |
| PLN02274 | 505 | inosine-5'-monophosphate dehydrogenase | 99.84 | |
| PRK07107 | 502 | inosine 5-monophosphate dehydrogenase; Validated | 99.82 | |
| PRK11750 | 1485 | gltB glutamate synthase subunit alpha; Provisional | 99.81 | |
| PRK07259 | 301 | dihydroorotate dehydrogenase 1B; Reviewed | 99.79 | |
| cd04739 | 325 | DHOD_like Dihydroorotate dehydrogenase (DHOD) like | 99.79 | |
| PRK07565 | 334 | dihydroorotate dehydrogenase 2; Reviewed | 99.78 | |
| COG0167 | 310 | PyrD Dihydroorotate dehydrogenase [Nucleotide tran | 99.78 | |
| TIGR01037 | 300 | pyrD_sub1_fam dihydroorotate dehydrogenase (subfam | 99.77 | |
| PLN02826 | 409 | dihydroorotate dehydrogenase | 99.76 | |
| PLN02495 | 385 | oxidoreductase, acting on the CH-CH group of donor | 99.75 | |
| PRK07807 | 479 | inosine 5-monophosphate dehydrogenase; Validated | 99.75 | |
| KOG2550 | 503 | consensus IMP dehydrogenase/GMP reductase [Nucleot | 99.74 | |
| cd04740 | 296 | DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c | 99.73 | |
| PRK02506 | 310 | dihydroorotate dehydrogenase 1A; Reviewed | 99.69 | |
| cd02940 | 299 | DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM | 99.69 | |
| PRK08318 | 420 | dihydropyrimidine dehydrogenase subunit B; Validat | 99.68 | |
| PRK05286 | 344 | dihydroorotate dehydrogenase 2; Reviewed | 99.64 | |
| cd04741 | 294 | DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) c | 99.57 | |
| cd04738 | 327 | DHOD_2_like Dihydroorotate dehydrogenase (DHOD) cl | 99.57 | |
| PF01180 | 295 | DHO_dh: Dihydroorotate dehydrogenase; InterPro: IP | 99.55 | |
| PF03060 | 330 | NMO: Nitronate monooxygenase; InterPro: IPR004136 | 99.54 | |
| TIGR00737 | 319 | nifR3_yhdG putative TIM-barrel protein, nifR3 fami | 99.54 | |
| PRK10415 | 321 | tRNA-dihydrouridine synthase B; Provisional | 99.54 | |
| TIGR03151 | 307 | enACPred_II putative enoyl-(acyl-carrier-protein) | 99.52 | |
| TIGR01036 | 335 | pyrD_sub2 dihydroorotate dehydrogenase, subfamily | 99.47 | |
| cd02810 | 289 | DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) | 99.46 | |
| KOG1436 | 398 | consensus Dihydroorotate dehydrogenase [Nucleotide | 99.42 | |
| COG2070 | 336 | Dioxygenases related to 2-nitropropane dioxygenase | 99.4 | |
| COG0042 | 323 | tRNA-dihydrouridine synthase [Translation, ribosom | 99.39 | |
| TIGR00742 | 318 | yjbN tRNA dihydrouridine synthase A. Members of th | 99.35 | |
| PRK10550 | 312 | tRNA-dihydrouridine synthase C; Provisional | 99.31 | |
| cd02801 | 231 | DUS_like_FMN Dihydrouridine synthase-like (DUS-lik | 99.26 | |
| cd02911 | 233 | arch_FMN Archeal FMN-binding domain. This family o | 99.23 | |
| PRK11815 | 333 | tRNA-dihydrouridine synthase A; Provisional | 99.22 | |
| cd04743 | 320 | NPD_PKS 2-Nitropropane dioxygenase (NPD)-like doma | 99.22 | |
| TIGR00736 | 231 | nifR3_rel_arch TIM-barrel protein, putative. Membe | 99.2 | |
| cd04742 | 418 | NPD_FabD 2-Nitropropane dioxygenase (NPD)-like dom | 99.12 | |
| cd04730 | 236 | NPD_like 2-Nitropropane dioxygenase (NPD), one of | 99.1 | |
| TIGR02814 | 444 | pfaD_fam PfaD family protein. The protein PfaD is | 99.06 | |
| PF01207 | 309 | Dus: Dihydrouridine synthase (Dus); InterPro: IPR0 | 99.06 | |
| KOG1799 | 471 | consensus Dihydropyrimidine dehydrogenase [Nucleot | 98.94 | |
| PRK09140 | 206 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R | 98.86 | |
| PRK06552 | 213 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 98.85 | |
| cd02803 | 327 | OYE_like_FMN_family Old yellow enzyme (OYE)-like F | 98.85 | |
| KOG2335 | 358 | consensus tRNA-dihydrouridine synthase [Translatio | 98.85 | |
| cd04729 | 219 | NanE N-acetylmannosamine-6-phosphate epimerase (Na | 98.84 | |
| PRK00507 | 221 | deoxyribose-phosphate aldolase; Provisional | 98.84 | |
| PF04131 | 192 | NanE: Putative N-acetylmannosamine-6-phosphate epi | 98.82 | |
| KOG0399 | 2142 | consensus Glutamate synthase [Amino acid transport | 98.82 | |
| PRK01130 | 221 | N-acetylmannosamine-6-phosphate 2-epimerase; Provi | 98.8 | |
| COG0274 | 228 | DeoC Deoxyribose-phosphate aldolase [Nucleotide tr | 98.76 | |
| cd04732 | 234 | HisA HisA. Phosphoribosylformimino-5-aminoimidazol | 98.64 | |
| PRK00278 | 260 | trpC indole-3-glycerol-phosphate synthase; Reviewe | 98.64 | |
| cd04727 | 283 | pdxS PdxS is a subunit of the pyridoxal 5'-phospha | 98.64 | |
| PRK13523 | 337 | NADPH dehydrogenase NamA; Provisional | 98.64 | |
| cd00331 | 217 | IGPS Indole-3-glycerol phosphate synthase (IGPS); | 98.63 | |
| cd02932 | 336 | OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN | 98.62 | |
| TIGR01182 | 204 | eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho | 98.6 | |
| cd04722 | 200 | TIM_phosphate_binding TIM barrel proteins share a | 98.6 | |
| cd00452 | 190 | KDPG_aldolase KDPG and KHG aldolase. This family b | 98.59 | |
| cd02933 | 338 | OYE_like_FMN Old yellow enzyme (OYE)-like FMN bind | 98.58 | |
| TIGR00343 | 287 | pyridoxal 5'-phosphate synthase, synthase subunit | 98.58 | |
| TIGR00007 | 230 | phosphoribosylformimino-5-aminoimidazole carboxami | 98.56 | |
| TIGR00126 | 211 | deoC deoxyribose-phosphate aldolase. Deoxyribose-p | 98.56 | |
| TIGR00262 | 256 | trpA tryptophan synthase, alpha subunit. Tryptopha | 98.54 | |
| cd04734 | 343 | OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN | 98.5 | |
| PRK07114 | 222 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 98.49 | |
| cd04733 | 338 | OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN | 98.47 | |
| PRK04180 | 293 | pyridoxal biosynthesis lyase PdxS; Provisional | 98.44 | |
| COG3010 | 229 | NanE Putative N-acetylmannosamine-6-phosphate epim | 98.44 | |
| cd04731 | 243 | HisF The cyclase subunit of imidazoleglycerol phos | 98.42 | |
| PRK07695 | 201 | transcriptional regulator TenI; Provisional | 98.41 | |
| cd04728 | 248 | ThiG Thiazole synthase (ThiG) is the tetrameric en | 98.41 | |
| cd02931 | 382 | ER_like_FMN Enoate reductase (ER)-like FMN-binding | 98.41 | |
| PRK13585 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.41 | |
| CHL00200 | 263 | trpA tryptophan synthase alpha subunit; Provisiona | 98.39 | |
| PRK13587 | 234 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.38 | |
| PRK00208 | 250 | thiG thiazole synthase; Reviewed | 98.37 | |
| PRK06015 | 201 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 98.35 | |
| cd04735 | 353 | OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN | 98.34 | |
| COG0107 | 256 | HisF Imidazoleglycerol-phosphate synthase [Amino a | 98.34 | |
| PRK01033 | 258 | imidazole glycerol phosphate synthase subunit HisF | 98.32 | |
| COG0800 | 211 | Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Ca | 98.32 | |
| PRK07455 | 187 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 98.31 | |
| TIGR03572 | 232 | WbuZ glycosyl amidation-associated protein WbuZ. T | 98.29 | |
| PF01081 | 196 | Aldolase: KDPG and KHG aldolase; InterPro: IPR0008 | 98.28 | |
| cd04724 | 242 | Tryptophan_synthase_alpha Ttryptophan synthase (TR | 98.26 | |
| PF00977 | 229 | His_biosynth: Histidine biosynthesis protein; Inte | 98.25 | |
| PRK14024 | 241 | phosphoribosyl isomerase A; Provisional | 98.24 | |
| PRK13125 | 244 | trpA tryptophan synthase subunit alpha; Provisiona | 98.24 | |
| cd04747 | 361 | OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN | 98.24 | |
| COG0106 | 241 | HisA Phosphoribosylformimino-5-aminoimidazole carb | 98.22 | |
| PF05690 | 247 | ThiG: Thiazole biosynthesis protein ThiG; InterPro | 98.22 | |
| cd02930 | 353 | DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-bindin | 98.2 | |
| PRK08255 | 765 | salicylyl-CoA 5-hydroxylase; Reviewed | 98.2 | |
| PRK05283 | 257 | deoxyribose-phosphate aldolase; Provisional | 98.18 | |
| PRK02083 | 253 | imidazole glycerol phosphate synthase subunit HisF | 98.17 | |
| cd04723 | 233 | HisA_HisF Phosphoribosylformimino-5-aminoimidazole | 98.16 | |
| PRK00043 | 212 | thiE thiamine-phosphate pyrophosphorylase; Reviewe | 98.16 | |
| PF00218 | 254 | IGPS: Indole-3-glycerol phosphate synthase; InterP | 98.15 | |
| PRK00748 | 233 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.15 | |
| TIGR00735 | 254 | hisF imidazoleglycerol phosphate synthase, cyclase | 98.12 | |
| PRK04128 | 228 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.09 | |
| CHL00162 | 267 | thiG thiamin biosynthesis protein G; Validated | 98.08 | |
| PRK05848 | 273 | nicotinate-nucleotide pyrophosphorylase; Provision | 98.05 | |
| cd04731 | 243 | HisF The cyclase subunit of imidazoleglycerol phos | 98.04 | |
| PRK14114 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.01 | |
| COG1902 | 363 | NemA NADH:flavin oxidoreductases, Old Yellow Enzym | 98.01 | |
| cd02929 | 370 | TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) | 97.99 | |
| PRK13957 | 247 | indole-3-glycerol-phosphate synthase; Provisional | 97.99 | |
| TIGR00735 | 254 | hisF imidazoleglycerol phosphate synthase, cyclase | 97.98 | |
| PRK05718 | 212 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 97.97 | |
| PRK02083 | 253 | imidazole glycerol phosphate synthase subunit HisF | 97.96 | |
| cd00959 | 203 | DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of | 97.96 | |
| TIGR01919 | 243 | hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosy | 97.96 | |
| PRK13111 | 258 | trpA tryptophan synthase subunit alpha; Provisiona | 97.96 | |
| cd00564 | 196 | TMP_TenI Thiamine monophosphate synthase (TMP synt | 97.95 | |
| PRK07428 | 288 | nicotinate-nucleotide pyrophosphorylase; Provision | 97.92 | |
| TIGR01304 | 369 | IMP_DH_rel_2 IMP dehydrogenase family protein. Thi | 97.91 | |
| PRK08883 | 220 | ribulose-phosphate 3-epimerase; Provisional | 97.9 | |
| cd01573 | 272 | modD_like ModD; Quinolinate phosphoribosyl transfe | 97.88 | |
| PF00724 | 341 | Oxidored_FMN: NADH:flavin oxidoreductase / NADH ox | 97.87 | |
| PRK05742 | 277 | nicotinate-nucleotide pyrophosphorylase; Provision | 97.84 | |
| PRK08385 | 278 | nicotinate-nucleotide pyrophosphorylase; Provision | 97.83 | |
| TIGR03128 | 206 | RuMP_HxlA 3-hexulose-6-phosphate synthase. at the | 97.82 | |
| TIGR01163 | 210 | rpe ribulose-phosphate 3-epimerase. This family co | 97.81 | |
| PRK09427 | 454 | bifunctional indole-3-glycerol phosphate synthase/ | 97.8 | |
| PRK00748 | 233 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 97.79 | |
| PLN02591 | 250 | tryptophan synthase | 97.79 | |
| PRK07226 | 267 | fructose-bisphosphate aldolase; Provisional | 97.77 | |
| cd04726 | 202 | KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl | 97.76 | |
| PRK08649 | 368 | inosine 5-monophosphate dehydrogenase; Validated | 97.75 | |
| cd00958 | 235 | DhnA Class I fructose-1,6-bisphosphate (FBP) aldol | 97.74 | |
| COG0159 | 265 | TrpA Tryptophan synthase alpha chain [Amino acid t | 97.73 | |
| PRK06512 | 221 | thiamine-phosphate pyrophosphorylase; Provisional | 97.72 | |
| COG2022 | 262 | ThiG Uncharacterized enzyme of thiazole biosynthes | 97.7 | |
| cd04732 | 234 | HisA HisA. Phosphoribosylformimino-5-aminoimidazol | 97.69 | |
| PRK13802 | 695 | bifunctional indole-3-glycerol phosphate synthase/ | 97.69 | |
| TIGR00734 | 221 | hisAF_rel hisA/hisF family protein. This alignment | 97.69 | |
| PRK07107 | 502 | inosine 5-monophosphate dehydrogenase; Validated | 97.68 | |
| PRK06806 | 281 | fructose-bisphosphate aldolase; Provisional | 97.68 | |
| TIGR00693 | 196 | thiE thiamine-phosphate pyrophosphorylase. This mo | 97.67 | |
| TIGR00078 | 265 | nadC nicotinate-nucleotide pyrophosphorylase. Syno | 97.67 | |
| PLN02334 | 229 | ribulose-phosphate 3-epimerase | 97.66 | |
| COG0134 | 254 | TrpC Indole-3-glycerol phosphate synthase [Amino a | 97.65 | |
| PRK07028 | 430 | bifunctional hexulose-6-phosphate synthase/ribonuc | 97.64 | |
| PRK08072 | 277 | nicotinate-nucleotide pyrophosphorylase; Provision | 97.63 | |
| PRK11840 | 326 | bifunctional sulfur carrier protein/thiazole synth | 97.62 | |
| PRK10605 | 362 | N-ethylmaleimide reductase; Provisional | 97.62 | |
| PRK14024 | 241 | phosphoribosyl isomerase A; Provisional | 97.62 | |
| PRK02615 | 347 | thiamine-phosphate pyrophosphorylase; Provisional | 97.61 | |
| cd01572 | 268 | QPRTase Quinolinate phosphoribosyl transferase (QA | 97.61 | |
| PTZ00170 | 228 | D-ribulose-5-phosphate 3-epimerase; Provisional | 97.61 | |
| cd01568 | 269 | QPRTase_NadC Quinolinate phosphoribosyl transferas | 97.53 | |
| TIGR01859 | 282 | fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, | 97.51 | |
| PLN02446 | 262 | (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methy | 97.51 | |
| PRK06559 | 290 | nicotinate-nucleotide pyrophosphorylase; Provision | 97.5 | |
| COG0352 | 211 | ThiE Thiamine monophosphate synthase [Coenzyme met | 97.49 | |
| PLN02617 | 538 | imidazole glycerol phosphate synthase hisHF | 97.48 | |
| PF04481 | 242 | DUF561: Protein of unknown function (DUF561); Inte | 97.48 | |
| cd00956 | 211 | Transaldolase_FSA Transaldolase-like fructose-6-ph | 97.47 | |
| TIGR01949 | 258 | AroFGH_arch predicted phospho-2-dehydro-3-deoxyhep | 97.46 | |
| PF01791 | 236 | DeoC: DeoC/LacD family aldolase; InterPro: IPR0029 | 97.46 | |
| PRK08745 | 223 | ribulose-phosphate 3-epimerase; Provisional | 97.45 | |
| PF00290 | 259 | Trp_syntA: Tryptophan synthase alpha chain; InterP | 97.42 | |
| TIGR02129 | 253 | hisA_euk phosphoribosylformimino-5-aminoimidazole | 97.41 | |
| TIGR00875 | 213 | fsa_talC_mipB fructose-6-phosphate aldolase, TalC/ | 97.4 | |
| PRK04302 | 223 | triosephosphate isomerase; Provisional | 97.39 | |
| cd00945 | 201 | Aldolase_Class_I Class I aldolases. The class I al | 97.39 | |
| PRK06096 | 284 | molybdenum transport protein ModD; Provisional | 97.36 | |
| PF01729 | 169 | QRPTase_C: Quinolinate phosphoribosyl transferase, | 97.34 | |
| PRK09016 | 296 | quinolinate phosphoribosyltransferase; Validated | 97.34 | |
| TIGR01182 | 204 | eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho | 97.33 | |
| PRK06978 | 294 | nicotinate-nucleotide pyrophosphorylase; Provision | 97.33 | |
| TIGR01334 | 277 | modD putative molybdenum utilization protein ModD. | 97.32 | |
| PRK04128 | 228 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 97.31 | |
| COG0036 | 220 | Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate | 97.28 | |
| TIGR00007 | 230 | phosphoribosylformimino-5-aminoimidazole carboxami | 97.28 | |
| TIGR03572 | 232 | WbuZ glycosyl amidation-associated protein WbuZ. T | 97.28 | |
| PRK13585 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 97.27 | |
| PRK07896 | 289 | nicotinate-nucleotide pyrophosphorylase; Provision | 97.27 | |
| PF02581 | 180 | TMP-TENI: Thiamine monophosphate synthase/TENI; In | 97.26 | |
| COG0214 | 296 | SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme meta | 97.24 | |
| cd00405 | 203 | PRAI Phosphoribosylanthranilate isomerase (PRAI) c | 97.24 | |
| TIGR02129 | 253 | hisA_euk phosphoribosylformimino-5-aminoimidazole | 97.24 | |
| PRK13587 | 234 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 97.23 | |
| PRK12656 | 222 | fructose-6-phosphate aldolase; Reviewed | 97.18 | |
| COG0107 | 256 | HisF Imidazoleglycerol-phosphate synthase [Amino a | 97.17 | |
| PRK06106 | 281 | nicotinate-nucleotide pyrophosphorylase; Provision | 97.15 | |
| PRK01362 | 214 | putative translaldolase; Provisional | 97.15 | |
| PRK01033 | 258 | imidazole glycerol phosphate synthase subunit HisF | 97.12 | |
| PRK04169 | 232 | geranylgeranylglyceryl phosphate synthase-like pro | 97.09 | |
| PF00977 | 229 | His_biosynth: Histidine biosynthesis protein; Inte | 97.08 | |
| PRK08005 | 210 | epimerase; Validated | 97.05 | |
| PRK09722 | 229 | allulose-6-phosphate 3-epimerase; Provisional | 97.05 | |
| PRK11750 | 1485 | gltB glutamate synthase subunit alpha; Provisional | 97.04 | |
| cd04723 | 233 | HisA_HisF Phosphoribosylformimino-5-aminoimidazole | 97.03 | |
| PRK06801 | 286 | hypothetical protein; Provisional | 97.02 | |
| PLN02460 | 338 | indole-3-glycerol-phosphate synthase | 97.02 | |
| PRK12376 | 236 | putative translaldolase; Provisional | 97.01 | |
| PF04898 | 287 | Glu_syn_central: Glutamate synthase central domain | 97.01 | |
| PRK06543 | 281 | nicotinate-nucleotide pyrophosphorylase; Provision | 96.99 | |
| PLN02411 | 391 | 12-oxophytodienoate reductase | 96.97 | |
| PRK13586 | 232 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 96.96 | |
| cd02812 | 219 | PcrB_like PcrB_like proteins. One member of this f | 96.94 | |
| PF01884 | 230 | PcrB: PcrB family; InterPro: IPR008205 This entry | 96.93 | |
| PRK12653 | 220 | fructose-6-phosphate aldolase; Reviewed | 96.92 | |
| PF04131 | 192 | NanE: Putative N-acetylmannosamine-6-phosphate epi | 96.91 | |
| PRK06552 | 213 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 96.9 | |
| PRK13813 | 215 | orotidine 5'-phosphate decarboxylase; Provisional | 96.86 | |
| PLN02898 | 502 | HMP-P kinase/thiamin-monophosphate pyrophosphoryla | 96.84 | |
| PRK13586 | 232 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 96.84 | |
| PRK12655 | 220 | fructose-6-phosphate aldolase; Reviewed | 96.8 | |
| KOG2334 | 477 | consensus tRNA-dihydrouridine synthase [Translatio | 96.8 | |
| cd00452 | 190 | KDPG_aldolase KDPG and KHG aldolase. This family b | 96.79 | |
| PRK03512 | 211 | thiamine-phosphate pyrophosphorylase; Provisional | 96.75 | |
| PRK04180 | 293 | pyridoxal biosynthesis lyase PdxS; Provisional | 96.75 | |
| PRK12290 | 437 | thiE thiamine-phosphate pyrophosphorylase; Reviewe | 96.72 | |
| cd00429 | 211 | RPE Ribulose-5-phosphate 3-epimerase (RPE). This e | 96.71 | |
| PF03437 | 254 | BtpA: BtpA family; InterPro: IPR005137 Photosystem | 96.71 | |
| PRK14114 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 96.7 | |
| TIGR00259 | 257 | thylakoid_BtpA membrane complex biogenesis protein | 96.68 | |
| PRK07998 | 283 | gatY putative fructose-1,6-bisphosphate aldolase; | 96.66 | |
| PRK06015 | 201 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 96.66 | |
| PF01081 | 196 | Aldolase: KDPG and KHG aldolase; InterPro: IPR0008 | 96.63 | |
| TIGR01769 | 205 | GGGP geranylgeranylglyceryl phosphate synthase. Th | 96.62 | |
| cd00381 | 325 | IMPDH IMPDH: The catalytic domain of the inosine m | 96.62 | |
| PRK05581 | 220 | ribulose-phosphate 3-epimerase; Validated | 96.59 | |
| KOG2333 | 614 | consensus Uncharacterized conserved protein [Gener | 96.56 | |
| TIGR02134 | 236 | transald_staph transaldolase. This small family of | 96.55 | |
| COG0269 | 217 | SgbH 3-hexulose-6-phosphate synthase and related p | 96.55 | |
| TIGR01768 | 223 | GGGP-family geranylgeranylglyceryl phosphate synth | 96.54 | |
| cd04727 | 283 | pdxS PdxS is a subunit of the pyridoxal 5'-phospha | 96.54 | |
| PRK13397 | 250 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 96.49 | |
| TIGR01919 | 243 | hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosy | 96.48 | |
| PRK13307 | 391 | bifunctional formaldehyde-activating enzyme/3-hexu | 96.45 | |
| PRK07315 | 293 | fructose-bisphosphate aldolase; Provisional | 96.43 | |
| PLN02716 | 308 | nicotinate-nucleotide diphosphorylase (carboxylati | 96.42 | |
| TIGR00343 | 287 | pyridoxal 5'-phosphate synthase, synthase subunit | 96.42 | |
| PRK08999 | 312 | hypothetical protein; Provisional | 96.4 | |
| PRK13306 | 216 | ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; | 96.33 | |
| PRK06843 | 404 | inosine 5-monophosphate dehydrogenase; Validated | 96.28 | |
| PLN02446 | 262 | (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methy | 96.28 | |
| KOG4201 | 289 | consensus Anthranilate synthase component II [Amin | 96.28 | |
| PRK09140 | 206 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R | 96.26 | |
| PRK08227 | 264 | autoinducer 2 aldolase; Validated | 96.18 | |
| PRK07114 | 222 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 96.1 | |
| PF00834 | 201 | Ribul_P_3_epim: Ribulose-phosphate 3 epimerase fam | 96.0 | |
| PRK08185 | 283 | hypothetical protein; Provisional | 95.97 | |
| PLN02591 | 250 | tryptophan synthase | 95.92 | |
| PRK05718 | 212 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 95.88 | |
| COG0157 | 280 | NadC Nicotinate-nucleotide pyrophosphorylase [Coen | 95.87 | |
| CHL00200 | 263 | trpA tryptophan synthase alpha subunit; Provisiona | 95.81 | |
| TIGR01302 | 450 | IMP_dehydrog inosine-5'-monophosphate dehydrogenas | 95.77 | |
| PF00478 | 352 | IMPDH: IMP dehydrogenase / GMP reductase domain; I | 95.77 | |
| cd04728 | 248 | ThiG Thiazole synthase (ThiG) is the tetrameric en | 95.73 | |
| PRK12595 | 360 | bifunctional 3-deoxy-7-phosphoheptulonate synthase | 95.71 | |
| PLN02617 | 538 | imidazole glycerol phosphate synthase hisHF | 95.71 | |
| PLN02274 | 505 | inosine-5'-monophosphate dehydrogenase | 95.7 | |
| PLN02417 | 280 | dihydrodipicolinate synthase | 95.7 | |
| PTZ00314 | 495 | inosine-5'-monophosphate dehydrogenase; Provisiona | 95.69 | |
| PRK09517 | 755 | multifunctional thiamine-phosphate pyrophosphoryla | 95.69 | |
| PRK08091 | 228 | ribulose-phosphate 3-epimerase; Validated | 95.62 | |
| PRK03620 | 303 | 5-dehydro-4-deoxyglucarate dehydratase; Provisiona | 95.44 | |
| PRK01130 | 221 | N-acetylmannosamine-6-phosphate 2-epimerase; Provi | 95.44 | |
| TIGR02313 | 294 | HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic ac | 95.41 | |
| cd04740 | 296 | DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c | 95.38 | |
| cd00951 | 289 | KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also | 95.37 | |
| COG0106 | 241 | HisA Phosphoribosylformimino-5-aminoimidazole carb | 95.35 | |
| KOG1606 | 296 | consensus Stationary phase-induced protein, SOR/SN | 95.33 | |
| cd00408 | 281 | DHDPS-like Dihydrodipicolinate synthase family. A | 95.33 | |
| TIGR00262 | 256 | trpA tryptophan synthase, alpha subunit. Tryptopha | 95.32 | |
| cd02810 | 289 | DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) | 95.26 | |
| PRK06852 | 304 | aldolase; Validated | 95.18 | |
| TIGR01305 | 343 | GMP_reduct_1 guanosine monophosphate reductase, eu | 95.18 | |
| cd00952 | 309 | CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate | 95.18 | |
| PRK00208 | 250 | thiG thiazole synthase; Reviewed | 95.15 | |
| COG0329 | 299 | DapA Dihydrodipicolinate synthase/N-acetylneuramin | 95.12 | |
| cd04729 | 219 | NanE N-acetylmannosamine-6-phosphate epimerase (Na | 95.04 | |
| PRK07807 | 479 | inosine 5-monophosphate dehydrogenase; Validated | 95.01 | |
| cd00439 | 252 | Transaldolase Transaldolase. Enzymes found in the | 94.95 | |
| cd01571 | 302 | NAPRTase_B Nicotinate phosphoribosyltransferase (N | 94.94 | |
| PRK13111 | 258 | trpA tryptophan synthase subunit alpha; Provisiona | 94.91 | |
| PRK14057 | 254 | epimerase; Provisional | 94.9 | |
| TIGR00734 | 221 | hisAF_rel hisA/hisF family protein. This alignment | 94.87 | |
| TIGR01303 | 475 | IMP_DH_rel_1 IMP dehydrogenase family protein. Thi | 94.83 | |
| COG0800 | 211 | Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Ca | 94.82 | |
| TIGR00683 | 290 | nanA N-acetylneuraminate lyase. N-acetylneuraminat | 94.81 | |
| PRK07565 | 334 | dihydroorotate dehydrogenase 2; Reviewed | 94.8 | |
| TIGR03249 | 296 | KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-deh | 94.76 | |
| TIGR01306 | 321 | GMP_reduct_2 guanosine monophosphate reductase, ba | 94.75 | |
| COG3010 | 229 | NanE Putative N-acetylmannosamine-6-phosphate epim | 94.74 | |
| PRK13957 | 247 | indole-3-glycerol-phosphate synthase; Provisional | 94.71 | |
| PLN02460 | 338 | indole-3-glycerol-phosphate synthase | 94.69 | |
| cd00516 | 281 | PRTase_typeII Phosphoribosyltransferase (PRTase) t | 94.66 | |
| cd00331 | 217 | IGPS Indole-3-glycerol phosphate synthase (IGPS); | 94.6 | |
| PRK04147 | 293 | N-acetylneuraminate lyase; Provisional | 94.57 | |
| PRK05096 | 346 | guanosine 5'-monophosphate oxidoreductase; Provisi | 94.57 | |
| PRK05458 | 326 | guanosine 5'-monophosphate oxidoreductase; Provisi | 94.46 | |
| TIGR00674 | 285 | dapA dihydrodipicolinate synthase. Dihydrodipicoli | 94.39 | |
| PF00701 | 289 | DHDPS: Dihydrodipicolinate synthetase family; Inte | 94.35 | |
| PRK05567 | 486 | inosine 5'-monophosphate dehydrogenase; Reviewed | 94.32 | |
| cd00954 | 288 | NAL N-Acetylneuraminic acid aldolase, also called | 94.3 | |
| cd00957 | 313 | Transaldolase_TalAB Transaldolases including both | 94.23 | |
| COG0159 | 265 | TrpA Tryptophan synthase alpha chain [Amino acid t | 94.21 | |
| cd00950 | 284 | DHDPS Dihydrodipicolinate synthase (DHDPS) is a ke | 94.21 | |
| COG0134 | 254 | TrpC Indole-3-glycerol phosphate synthase [Amino a | 94.1 | |
| COG2876 | 286 | AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate ( | 94.1 | |
| TIGR00736 | 231 | nifR3_rel_arch TIM-barrel protein, putative. Membe | 94.04 | |
| CHL00162 | 267 | thiG thiamin biosynthesis protein G; Validated | 94.01 | |
| PRK00230 | 230 | orotidine 5'-phosphate decarboxylase; Reviewed | 93.92 | |
| PF05690 | 247 | ThiG: Thiazole biosynthesis protein ThiG; InterPro | 93.88 | |
| cd00945 | 201 | Aldolase_Class_I Class I aldolases. The class I al | 93.87 | |
| PTZ00411 | 333 | transaldolase-like protein; Provisional | 93.86 | |
| cd00377 | 243 | ICL_PEPM Members of the ICL/PEPM enzyme family cat | 93.84 | |
| COG0176 | 239 | MipB Transaldolase [Carbohydrate transport and met | 93.84 | |
| PRK03170 | 292 | dihydrodipicolinate synthase; Provisional | 93.76 | |
| COG2022 | 262 | ThiG Uncharacterized enzyme of thiazole biosynthes | 93.67 | |
| PF04309 | 175 | G3P_antiterm: Glycerol-3-phosphate responsive anti | 93.52 | |
| cd04726 | 202 | KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl | 93.43 | |
| PRK12858 | 340 | tagatose 1,6-diphosphate aldolase; Reviewed | 93.41 | |
| PRK09250 | 348 | fructose-bisphosphate aldolase; Provisional | 93.22 | |
| PLN02979 | 366 | glycolate oxidase | 93.18 | |
| COG0135 | 208 | TrpF Phosphoribosylanthranilate isomerase [Amino a | 93.14 | |
| COG1830 | 265 | FbaB DhnA-type fructose-1,6-bisphosphate aldolase | 93.13 | |
| PRK13125 | 244 | trpA tryptophan synthase subunit alpha; Provisiona | 93.05 | |
| PRK07709 | 285 | fructose-bisphosphate aldolase; Provisional | 93.04 | |
| COG1646 | 240 | Predicted phosphate-binding enzymes, TIM-barrel fo | 93.02 | |
| PRK07455 | 187 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 92.85 | |
| PRK07709 | 285 | fructose-bisphosphate aldolase; Provisional | 92.81 | |
| PF09370 | 268 | TIM-br_sig_trns: TIM-barrel signal transduction pr | 92.78 | |
| PRK12309 | 391 | transaldolase/EF-hand domain-containing protein; P | 92.65 | |
| cd02809 | 299 | alpha_hydroxyacid_oxid_FMN Family of homologous FM | 92.63 | |
| TIGR01858 | 282 | tag_bisphos_ald class II aldolase, tagatose bispho | 92.48 | |
| PLN02493 | 367 | probable peroxisomal (S)-2-hydroxy-acid oxidase | 92.46 | |
| PLN02535 | 364 | glycolate oxidase | 92.38 | |
| COG0352 | 211 | ThiE Thiamine monophosphate synthase [Coenzyme met | 92.28 | |
| PRK05269 | 318 | transaldolase B; Provisional | 92.26 | |
| cd04724 | 242 | Tryptophan_synthase_alpha Ttryptophan synthase (TR | 92.26 | |
| TIGR00874 | 317 | talAB transaldolase. This family includes the majo | 92.26 | |
| PRK12346 | 316 | transaldolase A; Provisional | 92.1 | |
| COG3142 | 241 | CutC Uncharacterized protein involved in copper re | 92.07 | |
| KOG3111 | 224 | consensus D-ribulose-5-phosphate 3-epimerase [Carb | 92.0 | |
| PRK12737 | 284 | gatY tagatose-bisphosphate aldolase; Reviewed | 91.97 | |
| PF00290 | 259 | Trp_syntA: Tryptophan synthase alpha chain; InterP | 91.89 | |
| PRK12738 | 286 | kbaY tagatose-bisphosphate aldolase; Reviewed | 91.8 | |
| PRK08673 | 335 | 3-deoxy-7-phosphoheptulonate synthase; Reviewed | 91.76 | |
| cd02812 | 219 | PcrB_like PcrB_like proteins. One member of this f | 91.74 | |
| TIGR01768 | 223 | GGGP-family geranylgeranylglyceryl phosphate synth | 91.72 | |
| PRK08610 | 286 | fructose-bisphosphate aldolase; Reviewed | 91.47 | |
| PRK09195 | 284 | gatY tagatose-bisphosphate aldolase; Reviewed | 91.45 | |
| TIGR02317 | 285 | prpB methylisocitrate lyase. Members of this famil | 91.44 | |
| PRK11320 | 292 | prpB 2-methylisocitrate lyase; Provisional | 91.28 | |
| PF01207 | 309 | Dus: Dihydrouridine synthase (Dus); InterPro: IPR0 | 91.25 | |
| PRK13398 | 266 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 91.18 | |
| PRK05835 | 307 | fructose-bisphosphate aldolase; Provisional | 91.15 | |
| PF03932 | 201 | CutC: CutC family; InterPro: IPR005627 Copper tran | 91.1 | |
| cd04739 | 325 | DHOD_like Dihydroorotate dehydrogenase (DHOD) like | 91.09 | |
| TIGR00167 | 288 | cbbA ketose-bisphosphate aldolases. fructose-bisph | 91.03 | |
| TIGR03569 | 329 | NeuB_NnaB N-acetylneuraminate synthase. This famil | 91.02 | |
| TIGR01361 | 260 | DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate | 90.93 | |
| PF03932 | 201 | CutC: CutC family; InterPro: IPR005627 Copper tran | 90.92 | |
| TIGR01769 | 205 | GGGP geranylgeranylglyceryl phosphate synthase. Th | 90.92 | |
| PRK12457 | 281 | 2-dehydro-3-deoxyphosphooctonate aldolase; Provisi | 90.87 | |
| PRK03903 | 274 | transaldolase; Provisional | 90.43 | |
| cd02922 | 344 | FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding dom | 90.39 | |
| KOG2335 | 358 | consensus tRNA-dihydrouridine synthase [Translatio | 90.38 | |
| PF13714 | 238 | PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB | 90.35 | |
| PRK12857 | 284 | fructose-1,6-bisphosphate aldolase; Reviewed | 90.3 | |
| PRK12738 | 286 | kbaY tagatose-bisphosphate aldolase; Reviewed | 90.25 | |
| PRK08610 | 286 | fructose-bisphosphate aldolase; Reviewed | 90.16 | |
| cd00947 | 276 | TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) a | 90.14 | |
| PRK04169 | 232 | geranylgeranylglyceryl phosphate synthase-like pro | 90.14 | |
| TIGR02319 | 294 | CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phos | 90.07 | |
| PF04309 | 175 | G3P_antiterm: Glycerol-3-phosphate responsive anti | 89.88 | |
| PRK08662 | 343 | nicotinate phosphoribosyltransferase; Reviewed | 89.83 | |
| TIGR03569 | 329 | NeuB_NnaB N-acetylneuraminate synthase. This famil | 89.73 | |
| PRK07259 | 301 | dihydroorotate dehydrogenase 1B; Reviewed | 89.67 | |
| cd00947 | 276 | TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) a | 89.61 | |
| cd06556 | 240 | ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme sup | 89.44 | |
| PRK10415 | 321 | tRNA-dihydrouridine synthase B; Provisional | 89.33 | |
| PRK07998 | 283 | gatY putative fructose-1,6-bisphosphate aldolase; | 89.3 | |
| TIGR03128 | 206 | RuMP_HxlA 3-hexulose-6-phosphate synthase. at the | 89.3 | |
| PF01116 | 287 | F_bP_aldolase: Fructose-bisphosphate aldolase clas | 89.22 | |
| PRK09195 | 284 | gatY tagatose-bisphosphate aldolase; Reviewed | 89.17 | |
| PLN02495 | 385 | oxidoreductase, acting on the CH-CH group of donor | 89.1 | |
| PRK09427 | 454 | bifunctional indole-3-glycerol phosphate synthase/ | 88.83 | |
| PF01884 | 230 | PcrB: PcrB family; InterPro: IPR008205 This entry | 88.8 | |
| PRK11572 | 248 | copper homeostasis protein CutC; Provisional | 88.56 | |
| PRK11572 | 248 | copper homeostasis protein CutC; Provisional | 88.56 | |
| TIGR00167 | 288 | cbbA ketose-bisphosphate aldolases. fructose-bisph | 88.52 | |
| PRK11840 | 326 | bifunctional sulfur carrier protein/thiazole synth | 88.51 | |
| PRK01222 | 210 | N-(5'-phosphoribosyl)anthranilate isomerase; Provi | 88.5 | |
| COG1954 | 181 | GlpP Glycerol-3-phosphate responsive antiterminato | 88.48 | |
| TIGR02708 | 367 | L_lactate_ox L-lactate oxidase. Members of this pr | 88.27 | |
| TIGR00640 | 132 | acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal | 88.2 | |
| PRK10550 | 312 | tRNA-dihydrouridine synthase C; Provisional | 88.06 | |
| PRK13396 | 352 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 88.05 | |
| cd03319 | 316 | L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase cat | 87.98 | |
| PRK08883 | 220 | ribulose-phosphate 3-epimerase; Provisional | 87.86 | |
| TIGR01362 | 258 | KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. | 87.64 | |
| cd08205 | 367 | RuBisCO_IV_RLP Ribulose bisphosphate carboxylase l | 87.58 | |
| cd03316 | 357 | MR_like Mandelate racemase (MR)-like subfamily of | 87.58 | |
| PRK05835 | 307 | fructose-bisphosphate aldolase; Provisional | 87.56 | |
| PRK00278 | 260 | trpC indole-3-glycerol-phosphate synthase; Reviewe | 87.39 | |
| cd03315 | 265 | MLE_like Muconate lactonizing enzyme (MLE) like su | 87.39 | |
| cd04737 | 351 | LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding d | 87.21 | |
| TIGR02319 | 294 | CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phos | 87.18 | |
| COG0191 | 286 | Fba Fructose/tagatose bisphosphate aldolase [Carbo | 87.16 | |
| COG0434 | 263 | SgcQ Predicted TIM-barrel enzyme [General function | 87.11 | |
| PF00218 | 254 | IGPS: Indole-3-glycerol phosphate synthase; InterP | 87.06 | |
| PRK08318 | 420 | dihydropyrimidine dehydrogenase subunit B; Validat | 87.03 | |
| COG0042 | 323 | tRNA-dihydrouridine synthase [Translation, ribosom | 87.03 | |
| cd06557 | 254 | KPHMT-like Ketopantoate hydroxymethyltransferase ( | 87.01 | |
| cd00953 | 279 | KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolas | 86.9 | |
| PF01116 | 287 | F_bP_aldolase: Fructose-bisphosphate aldolase clas | 86.83 | |
| TIGR01858 | 282 | tag_bisphos_ald class II aldolase, tagatose bispho | 86.62 | |
| TIGR00693 | 196 | thiE thiamine-phosphate pyrophosphorylase. This mo | 86.4 | |
| TIGR03586 | 327 | PseI pseudaminic acid synthase. | 86.17 | |
| PRK02227 | 238 | hypothetical protein; Provisional | 85.94 | |
| TIGR00259 | 257 | thylakoid_BtpA membrane complex biogenesis protein | 85.84 | |
| PRK12737 | 284 | gatY tagatose-bisphosphate aldolase; Reviewed | 85.62 | |
| PRK00311 | 264 | panB 3-methyl-2-oxobutanoate hydroxymethyltransfer | 85.47 | |
| COG0269 | 217 | SgbH 3-hexulose-6-phosphate synthase and related p | 85.42 | |
| COG2185 | 143 | Sbm Methylmalonyl-CoA mutase, C-terminal domain/su | 85.27 | |
| cd04722 | 200 | TIM_phosphate_binding TIM barrel proteins share a | 85.15 | |
| PRK05198 | 264 | 2-dehydro-3-deoxyphosphooctonate aldolase; Provisi | 85.11 | |
| TIGR01501 | 134 | MthylAspMutase methylaspartate mutase, S subunit. | 85.04 | |
| TIGR00737 | 319 | nifR3_yhdG putative TIM-barrel protein, nifR3 fami | 84.83 | |
| cd00377 | 243 | ICL_PEPM Members of the ICL/PEPM enzyme family cat | 84.8 | |
| COG4981 | 717 | Enoyl reductase domain of yeast-type FAS1 [Lipid m | 84.78 | |
| cd02940 | 299 | DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM | 84.75 | |
| TIGR02321 | 290 | Pphn_pyruv_hyd phosphonopyruvate hydrolase. This f | 84.7 | |
| PRK07188 | 352 | nicotinate phosphoribosyltransferase; Provisional | 84.5 | |
| cd02811 | 326 | IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl di | 84.48 | |
| TIGR01521 | 347 | FruBisAldo_II_B fructose-bisphosphate aldolase, cl | 84.43 | |
| COG2513 | 289 | PrpB PEP phosphonomutase and related enzymes [Carb | 84.17 | |
| COG2089 | 347 | SpsE Sialic acid synthase [Cell envelope biogenesi | 84.09 | |
| PRK09196 | 347 | fructose-1,6-bisphosphate aldolase; Reviewed | 83.82 | |
| PRK12857 | 284 | fructose-1,6-bisphosphate aldolase; Reviewed | 83.81 | |
| cd00429 | 211 | RPE Ribulose-5-phosphate 3-epimerase (RPE). This e | 83.7 | |
| COG1954 | 181 | GlpP Glycerol-3-phosphate responsive antiterminato | 83.6 | |
| PRK07084 | 321 | fructose-bisphosphate aldolase; Provisional | 83.42 | |
| PF00923 | 287 | Transaldolase: Transaldolase; InterPro: IPR001585 | 83.32 | |
| PRK13399 | 347 | fructose-1,6-bisphosphate aldolase; Provisional | 83.18 | |
| PRK13305 | 218 | sgbH 3-keto-L-gulonate-6-phosphate decarboxylase; | 83.11 | |
| TIGR03217 | 333 | 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. | 82.74 | |
| KOG2550 | 503 | consensus IMP dehydrogenase/GMP reductase [Nucleot | 82.7 | |
| PF04476 | 235 | DUF556: Protein of unknown function (DUF556); Inte | 82.54 | |
| TIGR02320 | 285 | PEP_mutase phosphoenolpyruvate phosphomutase. A cl | 82.52 | |
| PRK02615 | 347 | thiamine-phosphate pyrophosphorylase; Provisional | 82.42 | |
| cd02911 | 233 | arch_FMN Archeal FMN-binding domain. This family o | 82.26 | |
| TIGR00742 | 318 | yjbN tRNA dihydrouridine synthase A. Members of th | 82.21 | |
| cd00564 | 196 | TMP_TenI Thiamine monophosphate synthase (TMP synt | 82.09 | |
| PLN03033 | 290 | 2-dehydro-3-deoxyphosphooctonate aldolase; Provisi | 81.63 | |
| PF01680 | 208 | SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p | 81.51 | |
| KOG3111 | 224 | consensus D-ribulose-5-phosphate 3-epimerase [Carb | 81.14 | |
| TIGR03151 | 307 | enACPred_II putative enoyl-(acyl-carrier-protein) | 81.09 | |
| smart00052 | 241 | EAL Putative diguanylate phosphodiesterase. Putati | 80.94 | |
| PRK13307 | 391 | bifunctional formaldehyde-activating enzyme/3-hexu | 80.86 | |
| cd04730 | 236 | NPD_like 2-Nitropropane dioxygenase (NPD), one of | 80.84 | |
| COG1411 | 229 | Uncharacterized protein related to proFAR isomeras | 80.79 | |
| COG1646 | 240 | Predicted phosphate-binding enzymes, TIM-barrel fo | 80.76 | |
| TIGR02321 | 290 | Pphn_pyruv_hyd phosphonopyruvate hydrolase. This f | 80.59 | |
| cd02931 | 382 | ER_like_FMN Enoate reductase (ER)-like FMN-binding | 80.48 | |
| PF03437 | 254 | BtpA: BtpA family; InterPro: IPR005137 Photosystem | 80.16 | |
| PF00563 | 236 | EAL: EAL domain; InterPro: IPR001633 This domain i | 80.09 |
| >KOG0538 consensus Glycolate oxidase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-81 Score=572.48 Aligned_cols=330 Identities=76% Similarity=1.161 Sum_probs=313.8
Q ss_pred CCChHHHHHHHHHhCCccchhhhcCccccchHHHHhHhcccccceeecccCCCCCCCcceeecccccccceeeccccccc
Q 019244 4 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQK 83 (344)
Q Consensus 4 ~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~f~~i~l~pr~l~~~~~vd~st~l~g~~l~~Pi~iapm~~~~ 83 (344)
++|++|||+.|+++||+.+|+|+.|||+|+.|+++|.++|.+|+|+||+|+|++.+|+||++||+++++||+|+|++++.
T Consensus 1 lv~~~dfe~~A~~~L~K~a~dyy~sgA~d~~Tl~~N~~AF~ri~~rPr~L~dVs~iD~sTtvlG~~i~~Pi~iapTa~qk 80 (363)
T KOG0538|consen 1 LVNVDDFEALAKQQLPKMAYDYYESGAEDQETLDENINAFRRILFRPRILRDVSKIDTSTTVLGQKISAPIMIAPTAMQK 80 (363)
T ss_pred CccHHHHHHHHHHhhhHHHHHHHhcCCcchhhHHHHHHHHHhhhccchhheecccccccceeccccccceeEEcchHHHh
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCChhhHHHHHHHHHcCCcc---------------------------ccCCHHHHHHHHHHHHHcCCcEEEeccCCccc
Q 019244 84 MAHPEGEYATARAASAAGTIM---------------------------VYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 136 (344)
Q Consensus 84 ~~~~~~~~~lA~aA~~~g~~~---------------------------~~~d~~~~~~~i~~a~~ag~~~l~~tvd~~~~ 136 (344)
+.||++|.+.||||+++|++| +++|++.++++++|++++||+++++|+|+|.+
T Consensus 81 ma~pdGE~~taraa~~~~~~~i~Ss~at~S~EdI~~aap~~~rwfQLYvykdr~It~~Lv~raEk~GfkAlvlTvDtP~l 160 (363)
T KOG0538|consen 81 MAHPDGELATARAAQAAGTIMILSSWATCSVEDIASAAPPGIRWFQLYVYKDRDITEQLVKRAEKAGFKALVLTVDTPRL 160 (363)
T ss_pred ccCCcccHHHHHHHHhcCCcEEEechhcCCHHHHHhhCCCCcEEEEEEecCchHHHHHHHHHHHHcCceEEEEEeccccc
Confidence 999999999999999999999 57999999999999999999999999999999
Q ss_pred cccHHHHHhhcCCCCcccccccccccccccccccchhhHHHHhhcCCCCCcHHHHHHHHHhcCCcEEEEeecCHHHHHHH
Q 019244 137 GRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIA 216 (344)
Q Consensus 137 g~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~PvivK~v~~~~~a~~~ 216 (344)
|+|+.|++|.|.+|..+..+|++.....+.......+.+.+++.+.+++++|++|+|+++.+++||++|++++.|||+.|
T Consensus 161 G~R~~D~~n~f~lp~~l~lknfe~~~~~~v~~~~~sg~~~~~~~~id~Sl~W~Di~wLr~~T~LPIvvKGilt~eDA~~A 240 (363)
T KOG0538|consen 161 GRRESDIKNKFSLPKNLTLKNFEGLKLTEVEEAGDSGLAAYVSSQIDPSLSWKDIKWLRSITKLPIVVKGVLTGEDARKA 240 (363)
T ss_pred cCchhhhhhcccCCcccccccccccccccCCcccchhhhhhhhcCCCCCCChhhhHHHHhcCcCCeEEEeecccHHHHHH
Confidence 99999999999999988888887665444433345577788888999999999999999999999999999999999999
Q ss_pred HHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcChH
Q 019244 217 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEK 296 (344)
Q Consensus 217 ~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~ 296 (344)
.++|+++|+||||||||+|..+.++++|+|+.+++.+++||+.|||||+|.||+|||||||.+|++|||++|+++++|+.
T Consensus 241 ve~G~~GIIVSNHGgRQlD~vpAtI~~L~Evv~aV~~ri~V~lDGGVR~G~DVlKALALGAk~VfiGRP~v~gLA~~Ge~ 320 (363)
T KOG0538|consen 241 VEAGVAGIIVSNHGGRQLDYVPATIEALPEVVKAVEGRIPVFLDGGVRRGTDVLKALALGAKGVFIGRPIVWGLAAKGEA 320 (363)
T ss_pred HHhCCceEEEeCCCccccCcccchHHHHHHHHHHhcCceEEEEecCcccchHHHHHHhcccceEEecCchheeeccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHhhhcccceeecc
Q 019244 297 GVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEW 333 (344)
Q Consensus 297 ~v~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l~~~~ 333 (344)
||.++|+.|++|++..|.+.||+|+.+++++.+....
T Consensus 321 GV~~vl~iL~~efe~tmaLsGc~sv~ei~~~~v~~~~ 357 (363)
T KOG0538|consen 321 GVKKVLDILRDEFELTMALSGCRSVKEITRNHVLTEE 357 (363)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCchhhhCccceeech
Confidence 9999999999999999999999999999998755443
|
|
| >PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-75 Score=555.70 Aligned_cols=331 Identities=92% Similarity=1.354 Sum_probs=300.4
Q ss_pred CCCChHHHHHHHHHhCCccchhhhcCccccchHHHHhHhcccccceeecccCCCCCCCcceeecccccccceeecccccc
Q 019244 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQ 82 (344)
Q Consensus 3 ~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~f~~i~l~pr~l~~~~~vd~st~l~g~~l~~Pi~iapm~~~ 82 (344)
.++|++|||+.||++||+++|+|++||++||.|+++|+.+|++|+|+||+|++++++||+|+|||+++++||+|||||++
T Consensus 2 ~~~~i~D~e~~Ar~~lp~~~~~y~~gga~de~t~~~N~~af~r~~l~PRvLrdv~~~d~~t~~lG~~~~~Pi~iAP~g~~ 81 (367)
T PLN02493 2 EITNVTEYDAIAKQKLPKMVYDYYASGAEDQWTLQENRNAFARILFRPRILIDVSKIDMTTTVLGFKISMPIMVAPTAMQ 81 (367)
T ss_pred ccCCHHHHHHHHHHhCCHHHHHHHccCcchhHHHHHHHHHHHhCCeecccccCCCCCCCceEECCccccccceechHHHH
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCChhhHHHHHHHHHcCCcc--------------------------ccCCHHHHHHHHHHHHHcCCcEEEeccCCccc
Q 019244 83 KMAHPEGEYATARAASAAGTIM--------------------------VYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 136 (344)
Q Consensus 83 ~~~~~~~~~~lA~aA~~~g~~~--------------------------~~~d~~~~~~~i~~a~~ag~~~l~~tvd~~~~ 136 (344)
++.||++|.++||||+++|++| +++|++.++++++||+++||+++++|+|+|..
T Consensus 82 ~l~hp~gE~a~AraA~~~gi~~~lSt~ss~slEeva~~~~~~~wfQlY~~~Dr~~~~~li~RA~~aG~~alvlTvD~p~~ 161 (367)
T PLN02493 82 KMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRL 161 (367)
T ss_pred hhcCCchHHHHHHHHHHcCCCeeecCcccCCHHHHHhcCCCCcEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEcCCCCC
Confidence 9999999999999999999999 46799999999999999999999999999999
Q ss_pred cccHHHHHhhcCCCCcccccccccccccccccccchhhHHHHhhcCCCCCcHHHHHHHHHhcCCcEEEEeecCHHHHHHH
Q 019244 137 GRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIA 216 (344)
Q Consensus 137 g~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~PvivK~v~~~~~a~~~ 216 (344)
|+|++|++++|.+|......++..............+...++....++.++|++|+|||+.|++||++|+|.++++++++
T Consensus 162 G~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~di~wlr~~~~~PiivKgV~~~~dA~~a 241 (367)
T PLN02493 162 GRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDVQWLQTITKLPILVKGVLTGEDARIA 241 (367)
T ss_pred CcchhhhcccCCCCcccchhhhhhccccCCCcccchhHHHHHhhcCCCCCCHHHHHHHHhccCCCEEeecCCCHHHHHHH
Confidence 99999999999888665554432211000000011123345555667889999999999999999999999999999999
Q ss_pred HHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcChH
Q 019244 217 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEK 296 (344)
Q Consensus 217 ~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~ 296 (344)
.++|+|+|+|||||||++|++++++++|+++++.+.+++|||+|||||+|.|++|||+|||++|++|||++|+++..|++
T Consensus 242 ~~~Gvd~I~VsnhGGrqld~~~~t~~~L~ei~~av~~~~~vi~dGGIr~G~Dv~KALALGA~aV~iGr~~l~~l~~~G~~ 321 (367)
T PLN02493 242 IQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVFSLAAEGEA 321 (367)
T ss_pred HHcCCCEEEECCCCCCCCCCchhHHHHHHHHHHHhCCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHHHHHhcCHH
Confidence 99999999999999999999999999999999888778999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHhhhcccceeecc
Q 019244 297 GVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEW 333 (344)
Q Consensus 297 ~v~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l~~~~ 333 (344)
|+.++++.+++||+..|.++|++++.+|++..+....
T Consensus 322 gv~~~l~~l~~el~~~m~l~G~~~i~~l~~~~~~~~~ 358 (367)
T PLN02493 322 GVRKVLQMLRDEFELTMALSGCRSLKEISRNHITTEW 358 (367)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHhChhhhhHHH
Confidence 9999999999999999999999999999988775543
|
|
| >PLN02535 glycolate oxidase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-72 Score=538.39 Aligned_cols=333 Identities=66% Similarity=1.037 Sum_probs=300.0
Q ss_pred CCCCChHHHHHHHHHhCCccchhhhcCccccchHHHHhHhcccccceeecccCCCCCCCcceeecccccccceeeccccc
Q 019244 2 GEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAM 81 (344)
Q Consensus 2 ~~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~f~~i~l~pr~l~~~~~vd~st~l~g~~l~~Pi~iapm~~ 81 (344)
.+++|++|||+.||++||+.+|+|++||+++|.|+++|+.+|++|+|+||+|++++++||+|+|||+++++||+|+|+|+
T Consensus 3 ~~~~~i~d~~~~A~~~lp~~~~~Y~~gga~~e~t~~~N~~af~~~~l~Pr~L~dv~~~d~~t~~lG~~~~~P~~iaP~g~ 82 (364)
T PLN02535 3 DEIVNVNEFQELAKQALPKMYYDFYAGGAEDQHTLKENVQAFRRITFRPRVLVDVSKIDMSTTILGYTISAPIMIAPTAM 82 (364)
T ss_pred cccCCHHHHHHHHHHhCCHHHHHHHhcCCcccHHHHHHHHHHHhCCeecccccCCCCCCCceEECCccccccceechHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCChhhHHHHHHHHHcCCcc--------------------------ccCCHHHHHHHHHHHHHcCCcEEEeccCCcc
Q 019244 82 QKMAHPEGEYATARAASAAGTIM--------------------------VYKDRNVVAQLVRRAERAGFKAIALTVDTPR 135 (344)
Q Consensus 82 ~~~~~~~~~~~lA~aA~~~g~~~--------------------------~~~d~~~~~~~i~~a~~ag~~~l~~tvd~~~ 135 (344)
+++.||++|.++||||+++|++| +++|++.++++++||+++||+++++|+|+|.
T Consensus 83 ~~l~hp~gE~a~AraA~~~g~~~~lSt~s~~slEeva~~~~~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTvD~p~ 162 (364)
T PLN02535 83 HKLAHPEGEIATARAAAACNTIMVLSFMASCTVEEVASSCNAVRFLQLYVYKRRDIAAQLVQRAEKNGYKAIVLTADVPR 162 (364)
T ss_pred hcccCcchHHHHHHHHHHcCCCeEecCcccCCHHHHHhcCCCCeEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeecCCC
Confidence 99999999999999999999999 4589999999999999999999999999999
Q ss_pred ccccHHHHHhhcCCCCcccccccccccccccccccchhhHHHHhhcCCCCCcHHHHHHHHHhcCCcEEEEeecCHHHHHH
Q 019244 136 LGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARI 215 (344)
Q Consensus 136 ~g~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~PvivK~v~~~~~a~~ 215 (344)
.|+|++|++++|.+|. ..++..............+...++....++.++|++|+|+++.+++||++|+++++++++.
T Consensus 163 ~g~R~~d~r~~~~~p~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~~i~~lr~~~~~PvivKgV~~~~dA~~ 239 (364)
T PLN02535 163 LGRREADIKNKMISPQ---LKNFEGLLSTEVVSDKGSGLEAFASETFDASLSWKDIEWLRSITNLPILIKGVLTREDAIK 239 (364)
T ss_pred CCCchhhhhcCCCCcc---hhhHhhhhccCCCccccccHHHHHHhccCCCCCHHHHHHHHhccCCCEEEecCCCHHHHHH
Confidence 9999999999998773 2222211000000001122334555556788999999999999999999999999999999
Q ss_pred HHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcCh
Q 019244 216 AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGE 295 (344)
Q Consensus 216 ~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G~ 295 (344)
+.++|+|+|+|+||||++++++++++++|+++++.+..++|||++|||+++.|++|+|++||++|++||+++|+++..|+
T Consensus 240 a~~~GvD~I~vsn~GGr~~d~~~~t~~~L~ev~~av~~~ipVi~dGGIr~g~Dv~KALalGA~aV~vGr~~l~~l~~~g~ 319 (364)
T PLN02535 240 AVEVGVAGIIVSNHGARQLDYSPATISVLEEVVQAVGGRVPVLLDGGVRRGTDVFKALALGAQAVLVGRPVIYGLAAKGE 319 (364)
T ss_pred HHhcCCCEEEEeCCCcCCCCCChHHHHHHHHHHHHHhcCCCEEeeCCCCCHHHHHHHHHcCCCEEEECHHHHhhhhhccH
Confidence 99999999999999999999999999999999988766899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCHhhhcccceeeccCCCC
Q 019244 296 KGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDASL 337 (344)
Q Consensus 296 ~~v~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l~~~~~~~~ 337 (344)
+|+.+.++.+.+||+..|.++|+++++||++..+....++.|
T Consensus 320 ~gv~~~l~~l~~el~~~m~l~G~~~i~el~~~~l~~~~~~~~ 361 (364)
T PLN02535 320 DGVRKVIEMLKDELEITMALSGCPSVKDITRSHVRTERERLQ 361 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCHHHhhhhhccchHhhhh
Confidence 999999999999999999999999999999988765555443
|
|
| >PRK11197 lldD L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-72 Score=539.19 Aligned_cols=327 Identities=38% Similarity=0.671 Sum_probs=294.2
Q ss_pred CCCChHHHHHHHHHhCCccchhhhcCccccchHHHHhHhcccccceeecccCCCCCCCcceeecccccccceeecccccc
Q 019244 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQ 82 (344)
Q Consensus 3 ~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~f~~i~l~pr~l~~~~~vd~st~l~g~~l~~Pi~iapm~~~ 82 (344)
.++|++|||+.||++||+++|+|++||++||.|+++|+++|++|+|+||+|++++++||+|+|||+++++||+|||||++
T Consensus 2 ~~~~i~D~~~~Ar~~Lp~~~~~Y~~gga~de~t~~~N~~af~~~~l~PR~L~dv~~~d~~t~llG~~~~~Pi~iAP~g~~ 81 (381)
T PRK11197 2 IISAASDYRAAAQRRLPPFLFHYIDGGAYAEYTLRRNVEDLADIALRQRVLKDMSDLSLETTLFGEKLSMPVALAPVGLT 81 (381)
T ss_pred ccCCHHHHHHHHHHhCCHHHHHHHhcCcchHHHHHHHHHHHHhcceecccccCCCCCCCceEECCcccccchhhChHHHh
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCChhhHHHHHHHHHcCCcc--------------------------ccCCHHHHHHHHHHHHHcCCcEEEeccCCccc
Q 019244 83 KMAHPEGEYATARAASAAGTIM--------------------------VYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 136 (344)
Q Consensus 83 ~~~~~~~~~~lA~aA~~~g~~~--------------------------~~~d~~~~~~~i~~a~~ag~~~l~~tvd~~~~ 136 (344)
++.||++|.++|+||+++|++| +++|++.++++++||+++||+++++|+|+|.+
T Consensus 82 ~l~hp~gE~~~AraA~~~g~~~~lSt~ss~slEeia~~~~~~~wfQlY~~~Dr~~~~~li~RA~~aG~~alvlTVD~pv~ 161 (381)
T PRK11197 82 GMYARRGEVQAARAADAKGIPFTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPVP 161 (381)
T ss_pred hccCCchHHHHHHHHHHcCCCEEeeCCCcCCHHHHHhccCCCeEEEEEecCCHHHHHHHHHHHHHcCCCEEEEecCCCCC
Confidence 9999999999999999999999 46899999999999999999999999999999
Q ss_pred cccHHHHHhhcCCCCccccccccc-cc----------------cccccc-----ccchhhHHHHhhcCCCCCcHHHHHHH
Q 019244 137 GRREADIKNRFTLPPFLTLKNFQG-LD----------------LGKMDE-----ANDSGLAAYVAGQIDRSLSWKDVKWL 194 (344)
Q Consensus 137 g~r~~~~~~~~~~~~g~~~~~~~~-~~----------------~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~i~~i 194 (344)
|+|++|++++|.+|.. +..++-. +. ...... ........+.....+++++|++|+||
T Consensus 162 G~Rerd~rn~~~~p~~-~~~~~~~~~~~p~w~~~~~~~~~~~~~~n~~~~~~~~~g~~~~~~~~~~~~~~~ltW~di~~l 240 (381)
T PRK11197 162 GARYRDAHSGMSGPNA-AMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWI 240 (381)
T ss_pred CCChhhhhcCCCCCCc-hhhhHHhhhcCchhhhhhccccCCCcccccccccccccchhHHHHHHHhccCCCCCHHHHHHH
Confidence 9999999999987742 3222110 00 000000 00111223444556788999999999
Q ss_pred HHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHH
Q 019244 195 QTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 274 (344)
Q Consensus 195 ~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kala 274 (344)
++.|++||++|+|++.++|+.+.++|+|+|+|+|||||+++..++++++|+++++.+..++|||+|||||+|.|++|+|+
T Consensus 241 r~~~~~pvivKgV~s~~dA~~a~~~Gvd~I~Vs~hGGr~~d~~~~t~~~L~~i~~a~~~~~~vi~dGGIr~g~Di~KALa 320 (381)
T PRK11197 241 RDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDITILADSGIRNGLDVVRMIA 320 (381)
T ss_pred HHhCCCCEEEEecCCHHHHHHHHhCCCCEEEECCCCCCCCCCcccHHHHHHHHHHHhcCCCeEEeeCCcCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988766899999999999999999999
Q ss_pred cCCCEEEEchHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHhhhccccee
Q 019244 275 LGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIV 330 (344)
Q Consensus 275 lGAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l~ 330 (344)
|||++|++||||+|+++..|++||.++++.|++||+..|.++|+++++||++..+.
T Consensus 321 LGA~~V~iGr~~l~~la~~G~~gv~~~l~~l~~El~~~m~l~G~~~i~el~~~~l~ 376 (381)
T PRK11197 321 LGADTVLLGRAFVYALAAAGQAGVANLLDLIEKEMRVAMTLTGAKSISEITRDSLV 376 (381)
T ss_pred cCcCceeEhHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCCCCHHHhCHhhhc
Confidence 99999999999999999999999999999999999999999999999999988764
|
|
| >TIGR02708 L_lactate_ox L-lactate oxidase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-71 Score=532.40 Aligned_cols=325 Identities=38% Similarity=0.603 Sum_probs=293.0
Q ss_pred CCCCChHHHHHHHHHhCCccchhhhcCccccchHHHHhHhcccccceeecccCCCCCCCcceeecccccccceeeccccc
Q 019244 2 GEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAM 81 (344)
Q Consensus 2 ~~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~f~~i~l~pr~l~~~~~vd~st~l~g~~l~~Pi~iapm~~ 81 (344)
.+++|++|||+.||++||+++|+|++||++||.|+++|+++|++|+|+||+|++++++||+|+|||+++++||+||||++
T Consensus 11 ~~~~~i~D~~~~A~~~lp~~~~~y~~~ga~de~t~~~N~~af~~~~l~PR~L~dv~~~d~~t~llG~~~~~Pv~iaP~g~ 90 (367)
T TIGR02708 11 VDFINTYDLEEMAQQVIPKGAFGYIASGAGDTFTLRENIRAFNHKLIVPHLLQDVENPSTEIEFLGHKLKSPFIMAPVAA 90 (367)
T ss_pred cCCCCHHHHHHHHHHhCCHHHHHHHhcCCchHHHHHHHHHHHHhcCeecccccCCCCCCCceeeCCcccccccccCcHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCChhhHHHHHHHHHcCCcc---------------------------ccCCHHHHHHHHHHHHHcCCcEEEeccCCc
Q 019244 82 QKMAHPEGEYATARAASAAGTIM---------------------------VYKDRNVVAQLVRRAERAGFKAIALTVDTP 134 (344)
Q Consensus 82 ~~~~~~~~~~~lA~aA~~~g~~~---------------------------~~~d~~~~~~~i~~a~~ag~~~l~~tvd~~ 134 (344)
+++.||++|.++|+||+++|++| +++|++.++++++||+++||+++++|+|+|
T Consensus 91 ~~l~~p~gE~~~ArAA~~~g~~~~lSt~ss~slEev~~~~~~~~~wfQlY~~~dr~~~~~li~RA~~aG~~alvlTvD~p 170 (367)
T TIGR02708 91 HKLANEQGEVATARGVSEFGSIYTTSSYSTADLPEISEALNGTPHWFQFYMSKDDGINRDIMDRVKADGAKAIVLTADAT 170 (367)
T ss_pred hhccCCcHHHHHHHHHHHcCCCeeecccccCCHHHHHhhcCCCceEEEEeccCCHHHHHHHHHHHHHcCCCEEEEecCCC
Confidence 99999999999999999999999 458999999999999999999999999999
Q ss_pred cccccHHHHHhhcCCCCcccccccccccccccccccchhhHHHHhhcCCCCCcHHHHHHHHHhcCCcEEEEeecCHHHHH
Q 019244 135 RLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDAR 214 (344)
Q Consensus 135 ~~g~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~PvivK~v~~~~~a~ 214 (344)
.+|+|++|+|++|.+|......+ ..+... ..... ..+....++.++|++|+|+++.+++||++|++.++++++
T Consensus 171 ~~g~R~~d~r~~~~~p~~~~~~~-~~~~~~-----~~~~~-~~~~~~~~~~~~w~~i~~l~~~~~~PvivKGv~~~eda~ 243 (367)
T TIGR02708 171 VGGNREVDVRNGFVFPVGMPIVQ-EYLPTG-----AGKSM-DNVYKSAKQKLSPRDIEEIAGYSGLPVYVKGPQCPEDAD 243 (367)
T ss_pred CCCcchhhhhcCCCCCCccchhh-hhcccC-----Cccch-hhhccccCCCCCHHHHHHHHHhcCCCEEEeCCCCHHHHH
Confidence 99999999999988774322111 000000 00000 111122356789999999999999999999999999999
Q ss_pred HHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcC
Q 019244 215 IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEG 294 (344)
Q Consensus 215 ~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G 294 (344)
++.++|+|+|+||||||||++.++++++.|+++++.+++++|||+|||||++.|++|+|++||++|++|||++|+++..|
T Consensus 244 ~a~~~Gvd~I~VS~HGGrq~~~~~a~~~~L~ei~~av~~~i~vi~dGGIr~g~Dv~KaLalGAd~V~igR~~l~~la~~G 323 (367)
T TIGR02708 244 RALKAGASGIWVTNHGGRQLDGGPAAFDSLQEVAEAVDKRVPIVFDSGVRRGQHVFKALASGADLVALGRPVIYGLALGG 323 (367)
T ss_pred HHHHcCcCEEEECCcCccCCCCCCcHHHHHHHHHHHhCCCCcEEeeCCcCCHHHHHHHHHcCCCEEEEcHHHHHHHHhcC
Confidence 99999999999999999999999999999999998886689999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCCHhhhcccceeecc
Q 019244 295 EKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEW 333 (344)
Q Consensus 295 ~~~v~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l~~~~ 333 (344)
++|+.++++.|++||+..|.++|+++++||++..+...+
T Consensus 324 ~~gv~~~l~~l~~El~~~M~l~G~~~i~eL~~~~l~~~~ 362 (367)
T TIGR02708 324 SQGARQVFEYLNKELKRVMQLTGTQTIEDVKGFDLRHNP 362 (367)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCHHHhCccccccCC
Confidence 999999999999999999999999999999988875443
|
Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence. |
| >cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-70 Score=530.05 Aligned_cols=324 Identities=41% Similarity=0.667 Sum_probs=288.9
Q ss_pred CCChHHHHHHHHHhCCccchhhhcCccccchHHHHhHhcccccceeecccCCCCCCCcceeecccccccceeeccccccc
Q 019244 4 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQK 83 (344)
Q Consensus 4 ~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~f~~i~l~pr~l~~~~~vd~st~l~g~~l~~Pi~iapm~~~~ 83 (344)
++|++|||+.||++||+++|+|++||++||.|+++|+.+|++|+|+||+|+|++++||+|+|||+++++||+|||||+++
T Consensus 18 ~~~i~D~~~~Ar~~lp~~~~~y~~gGa~de~t~~~N~~af~~~~l~PRvL~dv~~~dt~t~llG~~~~~P~~iAP~g~~~ 97 (383)
T cd03332 18 PVDPERLEALAREALSPGAFAYVAGGAGSESTARANRDAFSRWRIVPRMLRGVTERDLSVELFGRTLAAPLLLAPIGVQE 97 (383)
T ss_pred cCCHHHHHHHHHHhCCHHHHHHhccCcchHHHHHHHHHHHHhcCccccccccCCCCCCceeeCCccccccceechHHHHH
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCChhhHHHHHHHHHcCCcc---------------------------ccCCHHHHHHHHHHHHHcCCcEEEeccCCccc
Q 019244 84 MAHPEGEYATARAASAAGTIM---------------------------VYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 136 (344)
Q Consensus 84 ~~~~~~~~~lA~aA~~~g~~~---------------------------~~~d~~~~~~~i~~a~~ag~~~l~~tvd~~~~ 136 (344)
+.||++|.++|+||+++|++| +++|++.++++++||+++||+++++|+|+|+.
T Consensus 98 l~~p~gE~a~ArAA~~~gi~~~lSt~ss~slEeIa~~~~~~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTVD~pv~ 177 (383)
T cd03332 98 LFHPDAELATARAAAELGVPYILSTASSSSIEDVAAAAGDAPRWFQLYWPKDDDLTESLLRRAEKAGYRVLVVTLDTWSL 177 (383)
T ss_pred hcCCcHHHHHHHHHHHcCCCeeecCCCCCCHHHHHhhcCCCCcEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCC
Confidence 999999999999999999999 45799999999999999999999999999999
Q ss_pred cccHHHHHhhcCCCCc--ccccccc-c------ccccccccc-----cchhhHHHHhhcCCCCCcHHHHHHHHHhcCCcE
Q 019244 137 GRREADIKNRFTLPPF--LTLKNFQ-G------LDLGKMDEA-----NDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPI 202 (344)
Q Consensus 137 g~r~~~~~~~~~~~~g--~~~~~~~-~------~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~Pv 202 (344)
|+|++|+|++| .|.. ....++- . +........ .............++.++|+.|+||++.|++||
T Consensus 178 g~Rerd~r~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~~i~~lr~~~~~pv 256 (383)
T cd03332 178 GWRPRDLDLGY-LPFLRGIGIANYFSDPVFRKKLAEPVGEDPEAPPPMEAAVARFVSVFSGPSLTWEDLAFLREWTDLPI 256 (383)
T ss_pred CCchhhhhcCC-CCCccccchhhhhccchhhhccccCCCCCcccccccchhHHHHHHhcCCCCCCHHHHHHHHHhcCCCE
Confidence 99999999997 3421 1111100 0 000000000 001122233334578899999999999999999
Q ss_pred EEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEE
Q 019244 203 LVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 282 (344)
Q Consensus 203 ivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~i 282 (344)
++|++.+.++|+.+.++|+|+|+|+|||||++|++++++++|+++++.+.+++||+++||||+|.|++|||+|||++|++
T Consensus 257 ivKgV~~~~dA~~a~~~G~d~I~vsnhGGr~~d~~~~t~~~L~ei~~~~~~~~~vi~dGGIr~G~Dv~KALaLGA~~v~i 336 (383)
T cd03332 257 VLKGILHPDDARRAVEAGVDGVVVSNHGGRQVDGSIAALDALPEIVEAVGDRLTVLFDSGVRTGADIMKALALGAKAVLI 336 (383)
T ss_pred EEecCCCHHHHHHHHHCCCCEEEEcCCCCcCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCcCcHHHHHHHHHcCCCEEEE
Confidence 99999999999999999999999999999999999999999999999887789999999999999999999999999999
Q ss_pred chHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHhhhcccc
Q 019244 283 GRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDH 328 (344)
Q Consensus 283 g~~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~~~i~~l~~~~ 328 (344)
||||+|+++..|++||+++++.+++||+..|.++|+++++||+++.
T Consensus 337 Gr~~l~~l~~~G~~gv~~~l~~l~~El~~~m~l~G~~~i~~l~~~~ 382 (383)
T cd03332 337 GRPYAYGLALGGEDGVEHVLRNLLAELDLTMGLAGIRSIAELTRDA 382 (383)
T ss_pred cHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCCCCHHHhCccc
Confidence 9999999999999999999999999999999999999999998764
|
LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer. |
| >cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-70 Score=526.74 Aligned_cols=317 Identities=43% Similarity=0.705 Sum_probs=286.7
Q ss_pred HHHHHHHHHhCCccchhhhcCccccchHHHHhHhcccccceeecccCCCCCCCcceeecccccccceeecccccccccCC
Q 019244 8 MEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHP 87 (344)
Q Consensus 8 ~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~f~~i~l~pr~l~~~~~vd~st~l~g~~l~~Pi~iapm~~~~~~~~ 87 (344)
+|||+.||++||+++|+|++||++||.|+++|+++|++|+|+||+|++++++||+|+|||+++++||+|||||++++.||
T Consensus 1 ~D~~~~Ar~~lp~~~~~Y~~~ga~de~t~~~N~~af~~~~l~PRvLr~v~~~d~~ttllG~~~~~P~~iaP~g~~~l~hp 80 (361)
T cd04736 1 EDYRSLAKKRLPRMVFDYLEGGAEDEKGLRHNRDAFDRWRFIPRRLVDVSKRDISASLFGKVWSAPLVIAPTGLNGAFWP 80 (361)
T ss_pred ChHHHHHHHhCCHHHHHHHccCcchHHHHHHHHHHHHHcCccccccCCCCCCCCceeECCccccccccccHHHHHhccCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHcCCcc---------------------c----cCCHHHHHHHHHHHHHcCCcEEEeccCCccccccHHH
Q 019244 88 EGEYATARAASAAGTIM---------------------V----YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREAD 142 (344)
Q Consensus 88 ~~~~~lA~aA~~~g~~~---------------------~----~~d~~~~~~~i~~a~~ag~~~l~~tvd~~~~g~r~~~ 142 (344)
++|.++||||+++|++| | ..+++.++++++||+++||+++++|+|+|+.|+|++|
T Consensus 81 ~gE~a~AraA~~~g~~~~lSt~ss~siEeva~a~~~~~wfQLY~~~r~~~~~ll~RA~~aG~~alvlTvD~pv~g~R~~d 160 (361)
T cd04736 81 NGDLALARAAAKAGIPFVLSTASNMSIEDVARQADGDLWFQLYVVHRELAELLVKRALAAGYTTLVLTTDVAVNGYRERD 160 (361)
T ss_pred cHHHHHHHHHHHcCCcEEeeCCCCCCHHHHHhhcCCCeEEEEEecCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCchhh
Confidence 99999999999999999 1 2368999999999999999999999999999999999
Q ss_pred HHhhcCCCCccccccccccccc----------------ccccc---cchhhHHHHhhcCCCCCcHHHHHHHHHhcCCcEE
Q 019244 143 IKNRFTLPPFLTLKNFQGLDLG----------------KMDEA---NDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPIL 203 (344)
Q Consensus 143 ~~~~~~~~~g~~~~~~~~~~~~----------------~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~Pvi 203 (344)
.+++|.+|.+..+.++...... ..... .......++..+.+++++|++|+||++.++.|++
T Consensus 161 ~r~~~~~p~~~~~~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~w~~i~~ir~~~~~pvi 240 (361)
T cd04736 161 LRNGFAIPFRYTPRVLLDGILHPRWLLRFLRNGMPQLANFASDDAIDVEVQAALMSRQMDASFNWQDLRWLRDLWPHKLL 240 (361)
T ss_pred hhcCCCCCcccchhhhhhhccCchhhhhhcccccccccccccccccchhhHHHHHHhccCCcCCHHHHHHHHHhCCCCEE
Confidence 9999988876665553211000 00000 0011233454567889999999999999999999
Q ss_pred EEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 019244 204 VKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 283 (344)
Q Consensus 204 vK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig 283 (344)
+|+++++++++++.++|+|+|+||||||+|++..++++++|+++++.+ ++|||+|||||+|.||+|||+|||++|++|
T Consensus 241 iKgV~~~eda~~a~~~G~d~I~VSnhGGrqld~~~~~~~~L~ei~~~~--~~~vi~dGGIr~g~Dv~KALaLGA~aV~iG 318 (361)
T cd04736 241 VKGIVTAEDAKRCIELGADGVILSNHGGRQLDDAIAPIEALAEIVAAT--YKPVLIDSGIRRGSDIVKALALGANAVLLG 318 (361)
T ss_pred EecCCCHHHHHHHHHCCcCEEEECCCCcCCCcCCccHHHHHHHHHHHh--CCeEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 999999999999999999999999999999999999999999999877 599999999999999999999999999999
Q ss_pred hHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHhhhcc
Q 019244 284 RPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITR 326 (344)
Q Consensus 284 ~~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~~~i~~l~~ 326 (344)
||++|+++..|++||+++++.|++||+..|.++|+++++||++
T Consensus 319 r~~l~~la~~G~~gv~~~l~~l~~el~~~m~l~G~~~i~~l~~ 361 (361)
T cd04736 319 RATLYGLAARGEAGVSEVLRLLKEEIDRTLALIGCPDIASLTP 361 (361)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHcCc
Confidence 9999999999999999999999999999999999999999863
|
MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). |
| >PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-70 Score=526.98 Aligned_cols=316 Identities=51% Similarity=0.792 Sum_probs=278.3
Q ss_pred HHHhCCccchhhhcCccccchHHHHhHhcccccceeecccCCCCCCCcceeecccccccceeecccccccccCChhhHHH
Q 019244 14 AKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYAT 93 (344)
Q Consensus 14 A~~~l~~~~~~y~~~ga~~~~t~~~n~~~f~~i~l~pr~l~~~~~vd~st~l~g~~l~~Pi~iapm~~~~~~~~~~~~~l 93 (344)
||++||+..|+|++||+++|.|+++|+++|++|+|+||+|++++++||+|+|||+++++||+|||||++++.|+++|.++
T Consensus 1 Ar~~lp~~~~~yi~gga~~e~t~~~N~~af~~i~l~prvL~dv~~~D~st~~lG~~~s~P~~iaP~~~~~l~~~~ge~~l 80 (356)
T PF01070_consen 1 ARRRLPPRVFDYIDGGAGDEVTFRRNREAFDRIRLRPRVLRDVSDPDTSTTFLGQKLSMPFFIAPMGGGGLAHPDGERAL 80 (356)
T ss_dssp HHHHS-HHHHHHHHHHSTTTHHHHHHHHGGGGEEE---SSSBGSS-BSSEEETTEEESSSEEEEEESTGGGTSTTHHHHH
T ss_pred CccccCHHHHHHHHHcCCCcHHHHHHHHHHHHhcccccccCCcccCCCCeeeCCccCCCCeEEcchhhhhhhccchHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCcc--------------------------ccCCHHHHHHHHHHHHHcCCcEEEeccCCccccccHHHHHhhc
Q 019244 94 ARAASAAGTIM--------------------------VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRF 147 (344)
Q Consensus 94 A~aA~~~g~~~--------------------------~~~d~~~~~~~i~~a~~ag~~~l~~tvd~~~~g~r~~~~~~~~ 147 (344)
|++|+++|+++ +++|++...++++|++++||+++++|+|+|..++|++|.|++|
T Consensus 81 AraA~~~Gi~~~lss~s~~~~e~ia~~~~~~~~~Qly~~~d~~~~~~~i~rAe~aG~~Al~vtvD~~~~~~R~~d~r~g~ 160 (356)
T PF01070_consen 81 ARAAAKAGIPMMLSSQSSASLEEIAAASGGPLWFQLYPPRDRELTRDLIRRAEAAGAKALVVTVDAPQEGNRERDLRNGF 160 (356)
T ss_dssp HHHHHHHTSEEEEETTCSSCHHHHHHHCTSEEEEEEEGBSSHHHHHHHHHHHHHTTCSEEEEETSHSSHHHBHHHHHHTC
T ss_pred HHHHhccCcceeccCCccCCHHHHHhhccCCeEEEEEEecCHHHHHHHHHHhhcCCCCEEEEECcCcccCCccccccccc
Confidence 99999999999 3679999999999999999999999999999999999999999
Q ss_pred CCCCccccccccccccccc------------c-cccchhhHHHHhhcCCCCCcHHHHHHHHHhcCCcEEEEeecCHHHHH
Q 019244 148 TLPPFLTLKNFQGLDLGKM------------D-EANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDAR 214 (344)
Q Consensus 148 ~~~~g~~~~~~~~~~~~~~------------~-~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~PvivK~v~~~~~a~ 214 (344)
.+|..++..++........ . .......+++...+.+++++|+.|+|+++.|++|||+|+|++++|++
T Consensus 161 ~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~i~~~~~~~~~pvivKgv~~~~da~ 240 (356)
T PF01070_consen 161 SVPPKLSPRNLLDGASHPRSGMPRLENNEAPPPGDNGAAAARFVGSQFDPSLTWDDIEWIRKQWKLPVIVKGVLSPEDAK 240 (356)
T ss_dssp CCSTTHCTTCGTTTTTTT-TTTGG-----CSSSSTSTCHHHHHHHCHB-TT-SHHHHHHHHHHCSSEEEEEEE-SHHHHH
T ss_pred CCCcccccccccccccCcccccccccccccccCCCcchhHHHHHHHhcCCCCCHHHHHHHhcccCCceEEEecccHHHHH
Confidence 9888876666532211100 0 01122345666677788899999999999999999999999999999
Q ss_pred HHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcC
Q 019244 215 IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEG 294 (344)
Q Consensus 215 ~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G 294 (344)
++.++|+|+|+|||||||++||+++++++|+++++++++++|||+|||||+|.|++|+|+|||++|++||||+|++...|
T Consensus 241 ~~~~~G~~~i~vs~hGGr~~d~~~~~~~~L~~i~~~~~~~~~i~~dgGir~g~Dv~kalaLGA~~v~igr~~l~~l~~~g 320 (356)
T PF01070_consen 241 RAVDAGVDGIDVSNHGGRQLDWGPPTIDALPEIRAAVGDDIPIIADGGIRRGLDVAKALALGADAVGIGRPFLYALAAGG 320 (356)
T ss_dssp HHHHTT-SEEEEESGTGTSSTTS-BHHHHHHHHHHHHTTSSEEEEESS--SHHHHHHHHHTT-SEEEESHHHHHHHHHHH
T ss_pred HHHhcCCCEEEecCCCcccCccccccccccHHHHhhhcCCeeEEEeCCCCCHHHHHHHHHcCCCeEEEccHHHHHHHHhh
Confidence 99999999999999999999999999999999999887799999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCCHhhhcccce
Q 019244 295 EKGVRRVLEMLREEFELAMALSGCRSLKEITRDHI 329 (344)
Q Consensus 295 ~~~v~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l 329 (344)
++|+.++++.|++||+..|.++|+++++||+++.+
T Consensus 321 ~~gv~~~~~~l~~el~~~m~l~G~~~~~~l~~~~~ 355 (356)
T PF01070_consen 321 EEGVERVLEILKEELKRAMFLLGARSIAELRRSLL 355 (356)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-SBGGGHTGGGE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHhCHHhc
Confidence 99999999999999999999999999999998876
|
These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A .... |
| >cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-69 Score=520.27 Aligned_cols=321 Identities=42% Similarity=0.691 Sum_probs=290.0
Q ss_pred CCCChHHHHHHHHHhCCccchhhhcCccccchHHHHhHhcccccceeecccCCCCCCCcceeecccccccceeecccccc
Q 019244 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQ 82 (344)
Q Consensus 3 ~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~f~~i~l~pr~l~~~~~vd~st~l~g~~l~~Pi~iapm~~~ 82 (344)
+++|++|||+.||++||+++|+|++||++||.|+++|+++|++|+|+||+|++++++||+|+|||+++++||+|||||++
T Consensus 4 ~~~~i~d~~~~A~~~lp~~~~~y~~~ga~~e~t~~~N~~a~~~~~l~prvL~dv~~~d~~t~~lG~~~~~P~~iaP~g~~ 83 (351)
T cd04737 4 DIINLYDLEAEAKKVIPKGAFGYIAGGSEDEWTLRENTRAFNHKQIVPRVLQGVESPDTSTELLGIKLKTPIIMAPIAAH 83 (351)
T ss_pred ccCcHHHHHHHHHHhCCHHHHHHHhcCcchHHHHHHHHHHHHhcCeechhccCCCCCCCceEeCCccccchhhhHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCChhhHHHHHHHHHcCCcc---------------------------ccCCHHHHHHHHHHHHHcCCcEEEeccCCcc
Q 019244 83 KMAHPEGEYATARAASAAGTIM---------------------------VYKDRNVVAQLVRRAERAGFKAIALTVDTPR 135 (344)
Q Consensus 83 ~~~~~~~~~~lA~aA~~~g~~~---------------------------~~~d~~~~~~~i~~a~~ag~~~l~~tvd~~~ 135 (344)
++.||++|.++|++|+++|+++ +++|++..+++++|++++||+++++|+|+|.
T Consensus 84 ~l~~p~ge~a~AraA~~~gi~~~lSt~s~~s~Eei~~~~~~~~~wfQlY~~~d~~~~~~ll~rA~~aG~~alvlTvD~p~ 163 (351)
T cd04737 84 GLAHATGEVATARGMAEVGSLFSISTYSNTSLEEIAKASNGGPKWFQLYMSKDDGFNRSLLDRAKAAGAKAIILTADATV 163 (351)
T ss_pred HhcCCchHHHHHHHHHHcCCCEEecCCCCCCHHHHHHhcCCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCC
Confidence 9999999999999999999999 2469999999999999999999999999999
Q ss_pred ccccHHHHHhhcCCCCcccccccccccccccccccchhhHHHHhhcCCCCCcHHHHHHHHHhcCCcEEEEeecCHHHHHH
Q 019244 136 LGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARI 215 (344)
Q Consensus 136 ~g~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~PvivK~v~~~~~a~~ 215 (344)
.|+|++|++++|.+|.+....+...... . ...+. .......++.++|++++|+++.+++||++|++.++++++.
T Consensus 164 ~g~R~~d~r~~~~~p~~~~~~~~~~~~~---~--~~~~~-~~~~~~~~~~~~~~~l~~lr~~~~~PvivKgv~~~~dA~~ 237 (351)
T cd04737 164 GGNREADIRNKFQFPFGMPNLNHFSEGT---G--KGKGI-SEIYAAAKQKLSPADIEFIAKISGLPVIVKGIQSPEDADV 237 (351)
T ss_pred CCcchHHHHhcCCCCcccchhhhhcccc---c--cCcch-hhhhhhccCCCCHHHHHHHHHHhCCcEEEecCCCHHHHHH
Confidence 9999999999998885543322110000 0 00000 1112234567899999999999999999999999999999
Q ss_pred HHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcCh
Q 019244 216 AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGE 295 (344)
Q Consensus 216 ~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G~ 295 (344)
+.++|+|+|+|+||||++++.++++++.|+++++.+++++|||++|||+++.|++|+|++||++|++||+++|+++..|+
T Consensus 238 a~~~G~d~I~vsnhGGr~ld~~~~~~~~l~~i~~a~~~~i~vi~dGGIr~g~Di~kaLalGA~~V~iGr~~l~~la~~G~ 317 (351)
T cd04737 238 AINAGADGIWVSNHGGRQLDGGPASFDSLPEIAEAVNHRVPIIFDSGVRRGEHVFKALASGADAVAVGRPVLYGLALGGA 317 (351)
T ss_pred HHHcCCCEEEEeCCCCccCCCCchHHHHHHHHHHHhCCCCeEEEECCCCCHHHHHHHHHcCCCEEEECHHHHHHHhhchH
Confidence 99999999999999999999999999999999988876899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCHhhhcccce
Q 019244 296 KGVRRVLEMLREEFELAMALSGCRSLKEITRDHI 329 (344)
Q Consensus 296 ~~v~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l 329 (344)
+|+.++++.+++||+.+|.++|+++++||++.+|
T Consensus 318 ~gv~~~l~~l~~El~~~m~l~G~~~i~el~~~~~ 351 (351)
T cd04737 318 QGVASVLEHLNKELKIVMQLAGTRTIEDVKRTFL 351 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHhCCCCC
Confidence 9999999999999999999999999999987654
|
LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). |
| >cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-66 Score=499.94 Aligned_cols=312 Identities=47% Similarity=0.760 Sum_probs=283.2
Q ss_pred HHHHHHHHHhCCccchhhhcCccccchHHHHhHhcccccceeecccCCCCCCCcceeecccccccceeecccccccccCC
Q 019244 8 MEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHP 87 (344)
Q Consensus 8 ~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~f~~i~l~pr~l~~~~~vd~st~l~g~~l~~Pi~iapm~~~~~~~~ 87 (344)
+|||+.||++||+++|+|++||++||.|+++|+.+|++|+|+||+|++++++||+|+|||+++++||+|+||+++++.||
T Consensus 1 ~d~~~~A~~~lp~~~~~y~~~ga~~e~t~~~N~~af~~~~l~pr~L~dv~~~d~~~~~lG~~~~~Pi~iaP~~~~~~~~~ 80 (344)
T cd02922 1 HDFEAAAKKYLSKKAWAYYSSGADDEITLRENLEAFQRIRFRPRVLRDVEKVDTSTTILGHKVSLPFFISPAALAKLAHP 80 (344)
T ss_pred ChHHHHHHHhCCHHHHHHhccCcchHHHHHHHHHHHHhCceeccccCCCCCCCCceEECCcccCCceeeChHHHhhhCCc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHcCCcc----------------------------ccCCHHHHHHHHHHHHHcCCcEEEeccCCcccccc
Q 019244 88 EGEYATARAASAAGTIM----------------------------VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRR 139 (344)
Q Consensus 88 ~~~~~lA~aA~~~g~~~----------------------------~~~d~~~~~~~i~~a~~ag~~~l~~tvd~~~~g~r 139 (344)
++|.++|+||+++|++| +++|++.++++++|++++||+++++|+|.|..|+|
T Consensus 81 ~ge~~~AraA~~~gi~~~lss~s~~s~e~v~~~~~~~~~~w~Qly~~~d~~~~~~l~~ra~~ag~~alvltvD~p~~g~r 160 (344)
T cd02922 81 DGELNLARAAGKHGILQMISTNASCSLEEIVDARPPDQPLFFQLYVNKDRTKTEELLKRAEKLGAKAIFLTVDAPVLGKR 160 (344)
T ss_pred hHHHHHHHHHHHcCCCEEecCcccCCHHHHHHhcCCCCcEEEEEeecCCHHHHHHHHHHHHHcCCCEEEEECCCCCcCcc
Confidence 99999999999999999 35788999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCcccccccccccccccccccchhhHHHHhhcCCCCCcHHHHHHHHHhcCCcEEEEeecCHHHHHHHHHc
Q 019244 140 EADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQA 219 (344)
Q Consensus 140 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~ 219 (344)
++|++++|..|......+..... ...+...++....++..+|+.|+|+++.+++||++|++.++++++.+.++
T Consensus 161 ~~d~r~~~~~p~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~PvivKgv~~~~dA~~a~~~ 233 (344)
T cd02922 161 ERDERLKAEEAVSDGPAGKKTKA-------KGGGAGRAMSGFIDPTLTWDDIKWLRKHTKLPIVLKGVQTVEDAVLAAEY 233 (344)
T ss_pred hhhhhhcCCcCcccccccccccc-------ccchHHHHHhhccCCCCCHHHHHHHHHhcCCcEEEEcCCCHHHHHHHHHc
Confidence 99999999877654433311100 01112223333456678999999999999999999999999999999999
Q ss_pred CCcEEEEccCCCCCCCCchhhHHHHHHHHHHc---cCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcChH
Q 019244 220 GAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEK 296 (344)
Q Consensus 220 G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~---~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~ 296 (344)
|+|+|+|+||||+++|..++++.+|+++++.+ .+++|||++||||+|.|++|+|+|||++|++||+|++++.+.|++
T Consensus 234 G~d~I~vsnhgG~~~d~~~~~~~~L~~i~~~~~~~~~~~~vi~~GGIr~G~Dv~kalaLGA~aV~iG~~~l~~l~~~G~~ 313 (344)
T cd02922 234 GVDGIVLSNHGGRQLDTAPAPIEVLLEIRKHCPEVFDKIEVYVDGGVRRGTDVLKALCLGAKAVGLGRPFLYALSAYGEE 313 (344)
T ss_pred CCCEEEEECCCcccCCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHHHHhhccHH
Confidence 99999999999999998889999999998743 457999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHhhhcc
Q 019244 297 GVRRVLEMLREEFELAMALSGCRSLKEITR 326 (344)
Q Consensus 297 ~v~~~l~~l~~el~~~m~~~G~~~i~~l~~ 326 (344)
+|.++++.+++||+.+|.++|+++++||++
T Consensus 314 gv~~~l~~l~~EL~~~m~l~G~~~i~~l~~ 343 (344)
T cd02922 314 GVEKAIQILKDEIETTMRLLGVTSLDQLGP 343 (344)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHhCc
Confidence 999999999999999999999999999975
|
FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit. |
| >PLN02979 glycolate oxidase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-61 Score=457.80 Aligned_cols=292 Identities=90% Similarity=1.324 Sum_probs=260.2
Q ss_pred ccceeecccCCCCCCCcceeecccccccceeecccccccccCChhhHHHHHHHHHcCCcc--------------------
Q 019244 45 RILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM-------------------- 104 (344)
Q Consensus 45 ~i~l~pr~l~~~~~vd~st~l~g~~l~~Pi~iapm~~~~~~~~~~~~~lA~aA~~~g~~~-------------------- 104 (344)
-|+|+||+|++++++||+|+|||+++++||+|||||++++.||++|.++||||+++|++|
T Consensus 43 ~~~lrPRvLrdv~~~dtst~llG~~~~~P~~iAP~g~~~l~hpdgE~a~ARAA~~agi~~~lSt~ss~slEeIa~a~~~~ 122 (366)
T PLN02979 43 FCDFRPRILIDVSKIDMTTTVLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGI 122 (366)
T ss_pred eeEEECccccCCCCCCCceEECCcccCccceecHHHHHhhCCCChHHHHHHHHHHcCCCeeeccCcCCCHHHHHhccCCC
Confidence 489999999999999999999999999999999999999999999999999999999999
Q ss_pred ------ccCCHHHHHHHHHHHHHcCCcEEEeccCCccccccHHHHHhhcCCCCcccccccccccccccccccchhhHHHH
Q 019244 105 ------VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYV 178 (344)
Q Consensus 105 ------~~~d~~~~~~~i~~a~~ag~~~l~~tvd~~~~g~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (344)
+++|++.++++++||+++||+++++|+|+|..|+|++|++++|.+|......++..............+...++
T Consensus 123 ~wfQLY~~~Dr~~~~~ll~RA~~aG~~AlvlTVD~pv~G~R~rd~rn~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (366)
T PLN02979 123 RFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYV 202 (366)
T ss_pred eEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEecCCCCCCchhhhccCCCCCcccchhhhhhccccCCCcccchhHHHHH
Confidence 46799999999999999999999999999999999999999998887655555422110000000111233455
Q ss_pred hhcCCCCCcHHHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEE
Q 019244 179 AGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 258 (344)
Q Consensus 179 ~~~~~~~~~~~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~vi 258 (344)
....++.++|++|+|||+.|++||++|++.+.++|+++.++|+|+|+||||||+++|++++++++|+++++.+.+++|||
T Consensus 203 ~~~~~~~ltW~dl~wlr~~~~~PvivKgV~~~~dA~~a~~~Gvd~I~VsnhGGrqld~~p~t~~~L~ei~~~~~~~~~Vi 282 (366)
T PLN02979 203 AGQIDRTLSWKDVQWLQTITKLPILVKGVLTGEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVF 282 (366)
T ss_pred hhcCCCCCCHHHHHHHHhccCCCEEeecCCCHHHHHHHHhcCCCEEEECCCCcCCCCCchhHHHHHHHHHHHhCCCCeEE
Confidence 55667889999999999999999999999999999999999999999999999999999999999999998887789999
Q ss_pred EecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHhhhcccceeeccCCC
Q 019244 259 LDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDAS 336 (344)
Q Consensus 259 a~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l~~~~~~~ 336 (344)
+|||||+|.|++|||+|||++|++|||++|+++..|++|+.++++.+++||+..|.++|++++++|++..+......+
T Consensus 283 ~dGGIr~G~Di~KALALGAdaV~iGrp~L~~la~~G~~Gv~~~l~~l~~El~~~m~l~G~~~i~el~~~~~~~~~~~~ 360 (366)
T PLN02979 283 LDGGVRRGTDVFKALALGASGIFIGRPVVFSLAAEGEAGVRKVLQMLRDEFELTMALSGCRSLKEISRNHITTEWDTP 360 (366)
T ss_pred EeCCcCcHHHHHHHHHcCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhChhhhhHHHhcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999988775544333
|
|
| >COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-61 Score=459.76 Aligned_cols=326 Identities=44% Similarity=0.624 Sum_probs=295.5
Q ss_pred hHHHHHHHHHhCCccchhhhcCccccchHHHHhHhcccccceeecccCCCCCCCcceeecccccccceeecccccccccC
Q 019244 7 VMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAH 86 (344)
Q Consensus 7 ~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~f~~i~l~pr~l~~~~~vd~st~l~g~~l~~Pi~iapm~~~~~~~ 86 (344)
+.|+++.|+.++| +.|+|+.+|+++|.|+++|+++|++|.|+|++|++++++||+|+|||+++++||+|+||+++++.|
T Consensus 1 ~~~~~~~a~~~~~-~~~hy~~~~~~~e~t~~~n~~~f~~i~l~~~~L~~v~~idlst~~~G~~l~~Pi~iapmt~g~~~~ 79 (360)
T COG1304 1 VADLRRAAQRRLP-KAFHYIDGGAEDEVTLRRNREAFEDIALRPRVLPEVDDIDLSTTFLGQKLSAPIIIAPMTGGGLAH 79 (360)
T ss_pred CcchHHHHhhhcc-hHhHHHHhhccccccHhhhhhhhhhheeecccCCCcccCccceEecCccccCCEEEeccccccccC
Confidence 3689999999999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHcCCcc----------------------ccCCHHHHHHHHHHHHHcCCcEEEeccCCccccccHHHHH
Q 019244 87 PEGEYATARAASAAGTIM----------------------VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIK 144 (344)
Q Consensus 87 ~~~~~~lA~aA~~~g~~~----------------------~~~d~~~~~~~i~~a~~ag~~~l~~tvd~~~~g~r~~~~~ 144 (344)
++++..-|++|+.+|.++ +..+++...+++++++++|++.+++|+|.|..++|++|.+
T Consensus 80 ~~ge~~~a~~A~~a~~~~i~s~~gs~~ie~~~~~~~~q~y~~~~R~~~~~~~~~a~n~G~~~lv~t~d~~~~~~r~~d~~ 159 (360)
T COG1304 80 PEGEVINAKLAAAAGEPFILSTVGSQRIEEVAAAPPFQLYFSKDREFAPNLVDRAANAGAKQLVLTVDSPVGGERERDAV 159 (360)
T ss_pred hhhHHHHHHHHHHcCCCeeeeccccCcHHHhhcCcchhhhhHHHHHhhHHHHHHHHhcCCcceeeccCccchHHHHHHHH
Confidence 999999999999999888 2368888889999999999999999999999999999999
Q ss_pred hhcCCCCccccccccccccc----ccccccchhhHHHHhhcCCCCCcHHHHHHHHHhcCCcEEEEeecCHHHHHHHHHcC
Q 019244 145 NRFTLPPFLTLKNFQGLDLG----KMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAG 220 (344)
Q Consensus 145 ~~~~~~~g~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G 220 (344)
+.+..|......|+.+.... .........+.++.....++..+|+++.+|++.|..|+++|++.+++|+..+.+.|
T Consensus 160 ~~i~a~~~~~h~n~~qe~~~p~g~~~~~~~~~~i~~~~~~~~~P~i~ked~~~i~~~~~~~lv~kGV~~~~D~~~a~~tg 239 (360)
T COG1304 160 NGISAPALAIHLNVLQEATQPEGDRDGKGGLDSIAEYVSALSVPVISKEDGAGISKEWAGPLVLKGILAPEDAAGAGGTG 239 (360)
T ss_pred hccCCCcccccccHHHHhcCCcccccccchhhHHHHHHHhcCCCcccHHHHhHHHHhcCCcHHHhCCCCHHHHHhhccCC
Confidence 99887766555555331110 00001111345666666788899999999999999999999999999999999999
Q ss_pred CcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcChHHHHH
Q 019244 221 AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRR 300 (344)
Q Consensus 221 ~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~~v~~ 300 (344)
+++|.++||||+++|||++++++|++++++++++++|++|||||+|.|++|||+|||++|++|||++|+++..|++||.+
T Consensus 240 ~~~I~vsnhggrqlD~g~st~~~L~ei~~av~~~~~vi~dGGiR~G~Dv~KAlALGA~~v~igrp~L~~l~~~g~~GV~~ 319 (360)
T COG1304 240 ADGIEVSNHGGRQLDWGISTADSLPEIVEAVGDRIEVIADGGIRSGLDVAKALALGADAVGIGRPFLYGLAAGGEAGVER 319 (360)
T ss_pred ceEEEEEcCCCccccCCCChHHHHHHHHHHhCCCeEEEecCCCCCHHHHHHHHHhCCchhhhhHHHHHHHHhccHHHHHH
Confidence 99999999999999999999999999999998789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCHhhhcccceeecc
Q 019244 301 VLEMLREEFELAMALSGCRSLKEITRDHIVTEW 333 (344)
Q Consensus 301 ~l~~l~~el~~~m~~~G~~~i~~l~~~~l~~~~ 333 (344)
+++.+++||+.+|.++|+++|+||++..++...
T Consensus 320 ~le~~~~El~~~M~L~G~~~i~el~~~~l~~~~ 352 (360)
T COG1304 320 VLEIIRKELKIAMALTGAKNIEELKRVPLVLSG 352 (360)
T ss_pred HHHHHHHHHHHHHHhcCCCcHHHhccCceeecc
Confidence 999999999999999999999999999887654
|
|
| >cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-53 Score=399.10 Aligned_cols=273 Identities=59% Similarity=0.913 Sum_probs=236.8
Q ss_pred HHHHHHHHHhCCccchhhhcCccccchHHHHhHhcccccceeecccCCCCCCCcceeecccccccceeecccccccccCC
Q 019244 8 MEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHP 87 (344)
Q Consensus 8 ~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~f~~i~l~pr~l~~~~~vd~st~l~g~~l~~Pi~iapm~~~~~~~~ 87 (344)
+||++.|+++||+..|+|+.+|++++.|+++|+..|++|+|+||+|++++++||+|+|||+++++||+|+||++++..++
T Consensus 1 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~l~~~~~id~~~~~lg~~~~~Pi~iapm~g~~~~~~ 80 (299)
T cd02809 1 ADLRALARRRLPKAVFDYIDGGAGDEVTLRRNRAAFDRIRLRPRVLRDVSKRDTSTTLLGQKLAMPFGIAPTGLQGLAHP 80 (299)
T ss_pred ChHHHHHHHhCCHHHhhhhccccchHHHHHHHHHHHHhceeecccCCCCCCCCCceEECCeecCCCeeeCcccccccCCc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999998887789
Q ss_pred hhhHHHHHHHHHcCCccccC--------------------------CHHHHHHHHHHHHHcCCcEEEeccCCccccccHH
Q 019244 88 EGEYATARAASAAGTIMVYK--------------------------DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREA 141 (344)
Q Consensus 88 ~~~~~lA~aA~~~g~~~~~~--------------------------d~~~~~~~i~~a~~ag~~~l~~tvd~~~~g~r~~ 141 (344)
+++..+|++|+++|++++.. +++...+.++++++.|++++.+++++|..
T Consensus 81 ~~~~~la~aa~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~~~p~~----- 155 (299)
T cd02809 81 DGELATARAAAAAGIPFTLSTVSTTSLEEVAAAAPGPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDTPVL----- 155 (299)
T ss_pred hHHHHHHHHHHHcCCCEEecCCCcCCHHHHHHhcCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCC-----
Confidence 99999999999999999321 11111222222222222222222222110
Q ss_pred HHHhhcCCCCcccccccccccccccccccchhhHHHHhhcCCCCCcHHHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCC
Q 019244 142 DIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGA 221 (344)
Q Consensus 142 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~ 221 (344)
+.. ..|+.++++++.+++||++|++.++++++.+.++|+
T Consensus 156 ----------------------------------------~~~-~~~~~i~~l~~~~~~pvivK~v~s~~~a~~a~~~G~ 194 (299)
T cd02809 156 ----------------------------------------GRR-LTWDDLAWLRSQWKGPLILKGILTPEDALRAVDAGA 194 (299)
T ss_pred ----------------------------------------CCC-CCHHHHHHHHHhcCCCEEEeecCCHHHHHHHHHCCC
Confidence 111 478899999999999999999999999999999999
Q ss_pred cEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcChHHHHHH
Q 019244 222 AGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRV 301 (344)
Q Consensus 222 d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~~v~~~ 301 (344)
|+|+++||||++.++++++++.++++++.+.+++|||++|||+++.|++|+|++|||+|++||||++++...|++++.++
T Consensus 195 d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~lGAd~V~ig~~~l~~~~~~g~~~v~~~ 274 (299)
T cd02809 195 DGIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALALGADAVLIGRPFLYGLAAGGEAGVAHV 274 (299)
T ss_pred CEEEEcCCCCCCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEcHHHHHHHHhcCHHHHHHH
Confidence 99999999999999999999999999988755799999999999999999999999999999999999888899999999
Q ss_pred HHHHHHHHHHHHHHhCCCCHhhhcc
Q 019244 302 LEMLREEFELAMALSGCRSLKEITR 326 (344)
Q Consensus 302 l~~l~~el~~~m~~~G~~~i~~l~~ 326 (344)
++.+++||+.+|.++|+++++||++
T Consensus 275 i~~l~~el~~~m~~~G~~~i~~l~~ 299 (299)
T cd02809 275 LEILRDELERAMALLGCASLADLDP 299 (299)
T ss_pred HHHHHHHHHHHHHHHCCCCHHHhCc
Confidence 9999999999999999999999963
|
This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. |
| >cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=319.68 Aligned_cols=274 Identities=25% Similarity=0.369 Sum_probs=218.3
Q ss_pred HhHhcccccceeecccC--CCCCCCcceeecccccccceeecccccccccCChhhHHHHHHHHHcCCcc-------ccCC
Q 019244 38 ENRNAFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM-------VYKD 108 (344)
Q Consensus 38 ~n~~~f~~i~l~pr~l~--~~~~vd~st~l~g~~l~~Pi~iapm~~~~~~~~~~~~~lA~aA~~~g~~~-------~~~d 108 (344)
.+.+.||+|+|+|++|+ ++++|||+|+|+|+++++||+++||+|+.....+++.+||++|+++|++| .+.+
T Consensus 17 ~~~~~~d~i~l~~~~l~~~~~~~id~s~~~~G~~l~~Pi~ia~mtGg~~~~~~in~~La~~a~~~g~~~~~Gs~~~~~~~ 96 (326)
T cd02811 17 GGSTGFDDVRLVHNALPELDLDDIDLSTEFLGKRLSAPLLISAMTGGSEKAKEINRNLAEAAEELGIAMGVGSQRAALED 96 (326)
T ss_pred cCCCChhhEEEecccCCCCCcccCCCeeEECCceecCCEEEeCCCCCChHHHHHHHHHHHHHHHcCCCeEecCchhhccC
Confidence 35678999999999998 78999999999999999999999999876444567899999999999988 3456
Q ss_pred HHHHHHHHHHHHHcCC-cEEEeccCCcccc-ccHHHHHhhcCCCCcccccccccccccccccccchhhHHHHhhcCCCCC
Q 019244 109 RNVVAQLVRRAERAGF-KAIALTVDTPRLG-RREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 186 (344)
Q Consensus 109 ~~~~~~~i~~a~~ag~-~~l~~tvd~~~~g-~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (344)
++.. +-++..++... ..+..++..+.+. +...+.+. .++.+.++.++. +.+..|+..+++++.+|
T Consensus 97 ~e~~-~~~~~vr~~~~~~p~~~Nl~~~~~~~~~~~~~~~-----------~i~~~~adalel-~l~~~q~~~~~~~~~df 163 (326)
T cd02811 97 PELA-ESFTVVREAPPNGPLIANLGAVQLNGYGVEEARR-----------AVEMIEADALAI-HLNPLQEAVQPEGDRDF 163 (326)
T ss_pred hhhh-hHHHHHHHhCCCceEEeecCccccCCCCHHHHHH-----------HHHhcCCCcEEE-eCcchHhhcCCCCCcCH
Confidence 6655 33344444333 4456666665542 11111111 111122233332 34567788888877776
Q ss_pred -cH-HHHHHHHHhcCCcEEEEee---cCHHHHHHHHHcCCcEEEEccCCCCC--------------------CCCchhhH
Q 019244 187 -SW-KDVKWLQTITKLPILVKGV---LTAEDARIAVQAGAAGIIVSNHGARQ--------------------LDYVPATI 241 (344)
Q Consensus 187 -~~-~~i~~i~~~~~~PvivK~v---~~~~~a~~~~~~G~d~I~v~~~gG~~--------------------~~~g~~~~ 241 (344)
.| +.|+++++.+++||++|++ .+.++++.+.++|+|+|+|+|+||+. .+|+.++.
T Consensus 164 ~~~~~~i~~l~~~~~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~vsG~GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t~ 243 (326)
T cd02811 164 RGWLERIEELVKALSVPVIVKEVGFGISRETAKRLADAGVKAIDVAGAGGTSWARVENYRAKDSDQRLAEYFADWGIPTA 243 (326)
T ss_pred HHHHHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHcCCCEEEECCCCCCcccccccccccccccccccccccccccHH
Confidence 34 6799999999999999998 78999999999999999999998841 24577888
Q ss_pred HHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCH
Q 019244 242 MALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSL 321 (344)
Q Consensus 242 ~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~~~i 321 (344)
..|+++++.+. ++|||++|||+++.|++|+|++|||+|++||+||+++.. |.+++.++++.+.+||+.+|.++|++|+
T Consensus 244 ~~l~~~~~~~~-~ipIiasGGIr~~~dv~kal~lGAd~V~i~~~~L~~~~~-g~~~~~~~i~~~~~el~~~m~~~G~~si 321 (326)
T cd02811 244 ASLLEVRSALP-DLPLIASGGIRNGLDIAKALALGADLVGMAGPFLKAALE-GEEAVIETIEQIIEELRTAMFLTGAKNL 321 (326)
T ss_pred HHHHHHHHHcC-CCcEEEECCCCCHHHHHHHHHhCCCEEEEcHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 99999988764 799999999999999999999999999999999998766 9999999999999999999999999999
Q ss_pred hhhcc
Q 019244 322 KEITR 326 (344)
Q Consensus 322 ~~l~~ 326 (344)
+||++
T Consensus 322 ~el~~ 326 (326)
T cd02811 322 AELKQ 326 (326)
T ss_pred HHhcC
Confidence 99963
|
Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway. |
| >PRK05437 isopentenyl pyrophosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=321.37 Aligned_cols=281 Identities=25% Similarity=0.365 Sum_probs=226.8
Q ss_pred hHhcccccceeecccC--CCCCCCcceeecccccccceeecccccccccCChhhHHHHHHHHHcCCcc-------ccCCH
Q 019244 39 NRNAFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM-------VYKDR 109 (344)
Q Consensus 39 n~~~f~~i~l~pr~l~--~~~~vd~st~l~g~~l~~Pi~iapm~~~~~~~~~~~~~lA~aA~~~g~~~-------~~~d~ 109 (344)
..+.||+|+|+|++|+ ++++|||+|+|||+++++||+|+||+|+.....+.|.+||++|+++|++| .++++
T Consensus 26 ~~~~~d~v~l~~~~lp~~~~~~vd~s~~~~g~~l~~Pi~i~~MtGgs~~~~~in~~La~~a~~~G~~~~~Gs~~~~~~~~ 105 (352)
T PRK05437 26 KTTGFDDVRLIHNALPELDLDDIDLSTEFLGKKLSAPFLINAMTGGSEKAKEINRKLAEAAEELGIAMGVGSQRAALKDP 105 (352)
T ss_pred CCCChheEEEecccCCCCChhhccceeeECCceecCCEEecccCCCChhHHHHHHHHHHHHHHcCCCeEecccHhhccCh
Confidence 3457999999999998 78899999999999999999999999876444567899999999999999 35677
Q ss_pred HHHHHHHHHHHHcC-CcEEEeccCCccc-cccHHHHHhhcCCCCcccccccccccccccccccchhhHHHHhhcCCCCCc
Q 019244 110 NVVAQLVRRAERAG-FKAIALTVDTPRL-GRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS 187 (344)
Q Consensus 110 ~~~~~~i~~a~~ag-~~~l~~tvd~~~~-g~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (344)
+ ..+-++..++.. -..+..++..+.. ++...+... .++.+.++.++. +.+..|+.++++++.+|.
T Consensus 106 ~-~~~~~~~vr~~~p~~p~~aNl~~~~~~~~~~~~~~~-----------~~~~~~adal~l-~l~~~qe~~~p~g~~~f~ 172 (352)
T PRK05437 106 E-LADSFSVVRKVAPDGLLFANLGAVQLYGYGVEEAQR-----------AVEMIEADALQI-HLNPLQELVQPEGDRDFR 172 (352)
T ss_pred h-hHHHHHHHHHHCCCceEEeecCccccCCCCHHHHHH-----------HHHhcCCCcEEE-eCccchhhcCCCCcccHH
Confidence 7 444445545433 3446666666554 222222211 112222333332 345678888888887763
Q ss_pred -H-HHHHHHHHhcCCcEEEEee---cCHHHHHHHHHcCCcEEEEccCCCC---------C---------CCCchhhHHHH
Q 019244 188 -W-KDVKWLQTITKLPILVKGV---LTAEDARIAVQAGAAGIIVSNHGAR---------Q---------LDYVPATIMAL 244 (344)
Q Consensus 188 -~-~~i~~i~~~~~~PvivK~v---~~~~~a~~~~~~G~d~I~v~~~gG~---------~---------~~~g~~~~~~l 244 (344)
| +.++++++.+++||++|++ .+.++++.+.++|+|+|+|+|+||+ . .+|+.|+.++|
T Consensus 173 ~~le~i~~i~~~~~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~Vsg~GGt~~~~ie~~R~~~~~~~~~~~~~g~pt~~~l 252 (352)
T PRK05437 173 GWLDNIAEIVSALPVPVIVKEVGFGISKETAKRLADAGVKAIDVAGAGGTSWAAIENYRARDDRLASYFADWGIPTAQSL 252 (352)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCcHHHHHHHHHcCCCEEEECCCCCCCccchhhhhhhccccccccccccCCHHHHH
Confidence 3 6799999999999999998 7899999999999999999999883 2 25788999999
Q ss_pred HHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHhhh
Q 019244 245 EEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEI 324 (344)
Q Consensus 245 ~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~~~i~~l 324 (344)
.++++.. .++|||++|||+++.|++|+|++|||+|++||+|++++...|.+++.++++.+.+||+.+|.++|+++++||
T Consensus 253 ~~i~~~~-~~ipvia~GGI~~~~dv~k~l~~GAd~v~ig~~~l~~~~~~g~~~v~~~i~~~~~eL~~~m~~~G~~~i~eL 331 (352)
T PRK05437 253 LEARSLL-PDLPIIASGGIRNGLDIAKALALGADAVGMAGPFLKAALEGGEEAVIELIEQWIEELKIAMFLTGAKNIAEL 331 (352)
T ss_pred HHHHHhc-CCCeEEEECCCCCHHHHHHHHHcCCCEEEEhHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhCCCCHHHh
Confidence 9998874 379999999999999999999999999999999999988889999999999999999999999999999999
Q ss_pred cccceeecc
Q 019244 325 TRDHIVTEW 333 (344)
Q Consensus 325 ~~~~l~~~~ 333 (344)
++.+++..+
T Consensus 332 ~~~~~~~~~ 340 (352)
T PRK05437 332 RKVPLVLSG 340 (352)
T ss_pred CCCCEEecH
Confidence 999877654
|
|
| >TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-40 Score=315.38 Aligned_cols=277 Identities=25% Similarity=0.388 Sum_probs=219.0
Q ss_pred hcccccceeecccC--CCCCCCcceeecccccccceeecccccccccCChhhHHHHHHHHHcCCcc-------ccCCHHH
Q 019244 41 NAFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM-------VYKDRNV 111 (344)
Q Consensus 41 ~~f~~i~l~pr~l~--~~~~vd~st~l~g~~l~~Pi~iapm~~~~~~~~~~~~~lA~aA~~~g~~~-------~~~d~~~ 111 (344)
+.||+|+|+|.+|+ ++++|||||+|||+++++||+|+||+|+.......+..||++|+++|+++ .+++++.
T Consensus 21 ~~~~~~~~~~~~lp~~~~~~~d~s~~~~g~~l~~Pi~iaaMtGg~~~~~~in~~La~~a~~~g~~~~~Gs~~~~~~~~~~ 100 (333)
T TIGR02151 21 TGFDDITLIHNALPEINLDDIDLTTEFLGKRLKAPFYINAMTGGSEEAGKINRNLARAARELGIPMGVGSQRAALKDPET 100 (333)
T ss_pred CCcceEEEecCCCCCCCcccCCCceEECCccccCCEEEeCCCCCchhHHHHHHHHHHHHHHcCCCeEEcCchhhccChhh
Confidence 46999999999998 67899999999999999999999998876443456889999999999999 3557776
Q ss_pred HHHHHHHHHH-cCCcEEEeccCCcccccc-HHHHHhhcCCCCcccccccccccccccccccchhhHHHHhhcCCCCC-cH
Q 019244 112 VAQLVRRAER-AGFKAIALTVDTPRLGRR-EADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL-SW 188 (344)
Q Consensus 112 ~~~~i~~a~~-ag~~~l~~tvd~~~~g~r-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 188 (344)
.+++ +..++ ..-..+..++.++..... ..+.+ ..++.+.++.++. +.+..|+.++++++++| .|
T Consensus 101 ~~~~-~~vr~~~~~~p~i~nl~~~~~~~~~~~~~~-----------~~i~~i~adal~i-~ln~~q~~~~p~g~~~f~~~ 167 (333)
T TIGR02151 101 ADTF-EVVREEAPNGPLIANIGAPQLVEGGPEEAQ-----------EAIDMIEADALAI-HLNVLQELVQPEGDRNFKGW 167 (333)
T ss_pred HhHH-HHHHHhCCCCcEEeecCchhhccccHHHHH-----------HHHHHhcCCCEEE-cCcccccccCCCCCcCHHHH
Confidence 6555 33443 222334455554443211 11111 1112222333332 34556788888888777 34
Q ss_pred -HHHHHHHHhcCCcEEEEee---cCHHHHHHHHHcCCcEEEEccCCCCC------------------CCCchhhHHHHHH
Q 019244 189 -KDVKWLQTITKLPILVKGV---LTAEDARIAVQAGAAGIIVSNHGARQ------------------LDYVPATIMALEE 246 (344)
Q Consensus 189 -~~i~~i~~~~~~PvivK~v---~~~~~a~~~~~~G~d~I~v~~~gG~~------------------~~~g~~~~~~l~~ 246 (344)
+.++++++.+++||++|++ .+.+.++.+.++|+|+|+|+|+||+. .+|+.++.+.|.+
T Consensus 168 le~i~~i~~~~~vPVivK~~g~g~~~~~a~~L~~aGvd~I~Vsg~gGt~~~~ie~~r~~~~~~~~~~~~~g~~t~~~l~~ 247 (333)
T TIGR02151 168 LEKIAEICSQLSVPVIVKEVGFGISKEVAKLLADAGVSAIDVAGAGGTSWAQVENYRAKGSNLASFFNDWGIPTAASLLE 247 (333)
T ss_pred HHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHcCCCEEEECCCCCCcccchhhhcccccccchhhhcccHhHHHHHHH
Confidence 6799999999999999998 78999999999999999999998853 3467888888888
Q ss_pred HHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHhhhcc
Q 019244 247 VVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITR 326 (344)
Q Consensus 247 i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~~~i~~l~~ 326 (344)
+++ ...++|||++|||+++.|++|+|++|||+|++||+|+..+...|++++.++++.+.+||+.+|.++|+++++||++
T Consensus 248 ~~~-~~~~ipVIasGGI~~~~di~kaLalGAd~V~igr~~L~~~~~~g~~~v~~~i~~~~~eL~~~m~~~G~~~i~el~~ 326 (333)
T TIGR02151 248 VRS-DAPDAPIIASGGLRTGLDVAKAIALGADAVGMARPFLKAALDEGEEAVIEEIELIIEELKVAMFLTGAKTIAELKK 326 (333)
T ss_pred HHh-cCCCCeEEEECCCCCHHHHHHHHHhCCCeehhhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHcc
Confidence 876 2237999999999999999999999999999999999987768999999999999999999999999999999998
Q ss_pred cceee
Q 019244 327 DHIVT 331 (344)
Q Consensus 327 ~~l~~ 331 (344)
.+++.
T Consensus 327 ~~~~~ 331 (333)
T TIGR02151 327 VPLVI 331 (333)
T ss_pred CCeEe
Confidence 87754
|
Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids. |
| >TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-31 Score=251.72 Aligned_cols=260 Identities=19% Similarity=0.249 Sum_probs=192.7
Q ss_pred cccccceeecccC--CCCCCCcceeecccccccceeecccccccccCChhhHHHHHHHHHcCCcc-ccC-CHHHHHHHHH
Q 019244 42 AFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM-VYK-DRNVVAQLVR 117 (344)
Q Consensus 42 ~f~~i~l~pr~l~--~~~~vd~st~l~g~~l~~Pi~iapm~~~~~~~~~~~~~lA~aA~~~g~~~-~~~-d~~~~~~~i~ 117 (344)
.||+++|+|..++ ++++|||+|+|+++++++||+|++|. . .+|..||++|+++|... +++ +++...++++
T Consensus 3 ~FddV~lvp~~lp~~s~~dVdlst~~~~~~l~~P~~inAM~-----t-~in~~LA~~a~~~G~~~i~hK~~~E~~~sfvr 76 (321)
T TIGR01306 3 DYEDIQLIPNKCIVNSRSECDTSVTLGKHKFKLPVVPANMQ-----T-IIDEKLAEQLAENGYFYIMHRFDEESRIPFIK 76 (321)
T ss_pred CcccEEEecCCCCCCCHHHceeeEEECCcEecCcEEeeccc-----h-hhhHHHHHHHHHcCCEEEEecCCHHHHHHHHH
Confidence 5999999999997 46799999999999999999999994 2 58999999999999888 677 8888777877
Q ss_pred HHHHcCCcEEEeccCCccccccHHHHHhhcCCCCccccccccc-ccccccccccchhhHHHHhhcCCCCCcHHHHHHHHH
Q 019244 118 RAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQG-LDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQT 196 (344)
Q Consensus 118 ~a~~ag~~~l~~tvd~~~~g~r~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~ 196 (344)
..+..+. ...+.+.+ .+.+...-- ..++. +..+.+... ..+++....++.|+++++
T Consensus 77 k~k~~~L-~v~~SvG~-----t~e~~~r~~--------~lv~a~~~~d~i~~D---------~ahg~s~~~~~~i~~i~~ 133 (321)
T TIGR01306 77 DMQERGL-FASISVGV-----KACEYEFVT--------QLAEEALTPEYITID---------IAHGHSNSVINMIKHIKT 133 (321)
T ss_pred hcccccc-EEEEEcCC-----CHHHHHHHH--------HHHhcCCCCCEEEEe---------CccCchHHHHHHHHHHHH
Confidence 7655443 22222222 222211100 00000 000111110 012344456788999999
Q ss_pred hcCCcEEEEe-ecCHHHHHHHHHcCCcEEEEccCCCCCC--------CCchhhHHHHHHHHHHccCCCcEEEecCCCCHH
Q 019244 197 ITKLPILVKG-VLTAEDARIAVQAGAAGIIVSNHGARQL--------DYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 267 (344)
Q Consensus 197 ~~~~PvivK~-v~~~~~a~~~~~~G~d~I~v~~~gG~~~--------~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~ 267 (344)
.++.|.++|+ +.+.++|+.+.++|+|+|+|++++|+.. ..+.+.++++.+++++. ++|||+|||||++.
T Consensus 134 ~~p~~~vi~GnV~t~e~a~~l~~aGad~I~V~~G~G~~~~tr~~~g~g~~~~~l~ai~ev~~a~--~~pVIadGGIr~~~ 211 (321)
T TIGR01306 134 HLPDSFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAA--RKPIIADGGIRTHG 211 (321)
T ss_pred hCCCCEEEEecCCCHHHHHHHHHcCcCEEEECCCCCccccceeeeccCCCchHHHHHHHHHHhc--CCeEEEECCcCcHH
Confidence 9988855555 8999999999999999999998777631 22334678899998876 79999999999999
Q ss_pred HHHHHHHcCCCEEEEchHH--------------------HHHhhh----------cCh-------HHHHHHHHHHHHHHH
Q 019244 268 DVFKALALGASGIFIGRPV--------------------VYSLAA----------EGE-------KGVRRVLEMLREEFE 310 (344)
Q Consensus 268 dv~kalalGAd~V~ig~~~--------------------l~~~~~----------~G~-------~~v~~~l~~l~~el~ 310 (344)
|++|||++|||+||+|++| ++++.. +|. -.+.+++.++...|+
T Consensus 212 Di~KALa~GAd~Vmig~~~ag~~Espg~~~~~~g~~~k~y~g~~~~~~~~~~~~~eg~~~~v~~~g~~~~~~~~~~~glr 291 (321)
T TIGR01306 212 DIAKSIRFGASMVMIGSLFAGHEESPGETVEKDGKLYKEYFGSASEFQKGEHKNVEGKKMFVEHKGSLSDTLIEMQQDLQ 291 (321)
T ss_pred HHHHHHHcCCCEEeechhhcCcccCCCceEeeCCeEHhhhcCchhhhcccccccccceEEEeccCCCHHHHHHHHHHHHH
Confidence 9999999999999999988 222211 111 028899999999999
Q ss_pred HHHHHhCCCCHhhhcccceeec
Q 019244 311 LAMALSGCRSLKEITRDHIVTE 332 (344)
Q Consensus 311 ~~m~~~G~~~i~~l~~~~l~~~ 332 (344)
..|.++|+++++||++..++..
T Consensus 292 ~~~~~~G~~~l~~~~~~~~~~~ 313 (321)
T TIGR01306 292 SSISYAGGKDLDSLRTVDYVIV 313 (321)
T ss_pred HHHHhcCCCcHHHHhhCCEEEE
Confidence 9999999999999998766543
|
A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages. |
| >PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.7e-31 Score=250.66 Aligned_cols=260 Identities=18% Similarity=0.238 Sum_probs=191.8
Q ss_pred cccccceeecccC--CCCCCCcceeecccccccceeecccccccccCChhhHHHHHHHHHcCCcc-ccC-CHHHHHHHHH
Q 019244 42 AFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM-VYK-DRNVVAQLVR 117 (344)
Q Consensus 42 ~f~~i~l~pr~l~--~~~~vd~st~l~g~~l~~Pi~iapm~~~~~~~~~~~~~lA~aA~~~g~~~-~~~-d~~~~~~~i~ 117 (344)
.||+++|+|..|+ ++++||++|+|+|+++++||||++|. . .+|..||++|+++|... +++ +++...++++
T Consensus 6 ~Fddv~lv~~~lp~~s~~dvdlst~~~~~~l~~P~~inAM~-----t-~iN~~LA~~a~~~G~~~~~~k~~~e~~~~~~r 79 (326)
T PRK05458 6 DYEDIQLIPNKCIVNSRSECDTSVTLGPRTFKLPVVPANMQ-----T-IIDEKIAEWLAENGYFYIMHRFDPEARIPFIK 79 (326)
T ss_pred CccceEEecCCCCCCCHHHcccceEECCcEecCcEEEeccc-----c-hhHHHHHHHHHHcCCEEEEecCCHHHHHHHHH
Confidence 4999999999997 56799999999999999999999994 2 58999999999999877 677 8888888886
Q ss_pred HHHHcCCcEEEeccCCccccccHHHHHhhcCCCCccccccccc-ccccccccccchhhHHHHhhcCCCCCcHHHHHHHHH
Q 019244 118 RAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQG-LDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQT 196 (344)
Q Consensus 118 ~a~~ag~~~l~~tvd~~~~g~r~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~ 196 (344)
..+..+. ...+.+.+. ..+....- ..++. ...+.++.... .++.....+.|++|++
T Consensus 80 ~~~~~~l-~v~~~vg~~-----~~~~~~~~--------~Lv~ag~~~d~i~iD~a---------~gh~~~~~e~I~~ir~ 136 (326)
T PRK05458 80 DMHEQGL-IASISVGVK-----DDEYDFVD--------QLAAEGLTPEYITIDIA---------HGHSDSVINMIQHIKK 136 (326)
T ss_pred hcccccc-EEEEEecCC-----HHHHHHHH--------HHHhcCCCCCEEEEECC---------CCchHHHHHHHHHHHh
Confidence 5544443 222222211 11111000 00000 00011111111 1223334567999999
Q ss_pred hcC-CcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCC------CCchh--hHHHHHHHHHHccCCCcEEEecCCCCHH
Q 019244 197 ITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQL------DYVPA--TIMALEEVVKATQGRIPVFLDGGVRRGT 267 (344)
Q Consensus 197 ~~~-~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~------~~g~~--~~~~l~~i~~~~~~~~~via~GGIr~g~ 267 (344)
.++ +||++|.+.|.++++.+.++|+|+|.|+++||++. ..+.+ .++++.++++.+ ++|||++|||+++.
T Consensus 137 ~~p~~~vi~g~V~t~e~a~~l~~aGad~i~vg~~~G~~~~t~~~~g~~~~~w~l~ai~~~~~~~--~ipVIAdGGI~~~~ 214 (326)
T PRK05458 137 HLPETFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAA--RKPIIADGGIRTHG 214 (326)
T ss_pred hCCCCeEEEEecCCHHHHHHHHHcCcCEEEECCCCCcccccccccCCCCCccHHHHHHHHHHHc--CCCEEEeCCCCCHH
Confidence 995 88998899999999999999999999999999652 12345 455688888776 69999999999999
Q ss_pred HHHHHHHcCCCEEEEchHHH--------------------HHh---hh-------cChH-------HHHHHHHHHHHHHH
Q 019244 268 DVFKALALGASGIFIGRPVV--------------------YSL---AA-------EGEK-------GVRRVLEMLREEFE 310 (344)
Q Consensus 268 dv~kalalGAd~V~ig~~~l--------------------~~~---~~-------~G~~-------~v~~~l~~l~~el~ 310 (344)
|++|+|++||++||+|++|. +++ .. +|.+ .+.+++..+..+|+
T Consensus 215 Di~KaLa~GA~aV~vG~~~~~~~espg~~~~~~g~~~k~y~g~~~~~~~~~~~~~eG~e~~v~~~G~l~~~l~~l~~gLr 294 (326)
T PRK05458 215 DIAKSIRFGATMVMIGSLFAGHEESPGKTVEIDGKLYKEYFGSASEFQKGEYKNVEGKKILVPHKGSLKDTLTEMEQDLQ 294 (326)
T ss_pred HHHHHHHhCCCEEEechhhcCCccCCCceeeecchhHHHhhCcHhhhccccccccCCceEEecccCCHHHHHHHHHHHHH
Confidence 99999999999999999996 111 11 2333 48899999999999
Q ss_pred HHHHHhCCCCHhhhcccceeec
Q 019244 311 LAMALSGCRSLKEITRDHIVTE 332 (344)
Q Consensus 311 ~~m~~~G~~~i~~l~~~~l~~~ 332 (344)
..|.++|++++.||++..++..
T Consensus 295 ~~m~~~Ga~~i~el~~~~~v~~ 316 (326)
T PRK05458 295 SSISYAGGRDLDAIRKVDYVIV 316 (326)
T ss_pred HHHHHhCCCCHHHHhcCCEEEE
Confidence 9999999999999998765543
|
|
| >cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-29 Score=245.55 Aligned_cols=263 Identities=24% Similarity=0.207 Sum_probs=194.2
Q ss_pred CCCcceeecc-----cccccceeecccccccccCChhhHHHHHHHHHcCCccc----cCCHHHHHHHHHHHHHcCCcEEE
Q 019244 58 KIDMNTTVLG-----FKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMV----YKDRNVVAQLVRRAERAGFKAIA 128 (344)
Q Consensus 58 ~vd~st~l~g-----~~l~~Pi~iapm~~~~~~~~~~~~~lA~aA~~~g~~~~----~~d~~~~~~~i~~a~~ag~~~l~ 128 (344)
.++.++++++ ..+..||++++|+++.++ ++...+||.||+++|+... ..+++.....++ .+
T Consensus 59 ~~~~~~~~g~~~~~~~~i~~Pi~~~~Ms~Gs~s-~~a~~aLa~aa~~aG~~~~~Gegg~~~~~~~~~~~---------~i 128 (392)
T cd02808 59 EVDDRVTIGPNAEKPLKLDSPFNISAMSFGALS-KEAKEALAIGAALAGTASNTGEGGELPEEREGGGD---------II 128 (392)
T ss_pred ccccceeeccccCCccccccceEecCCCCCccc-HHHHHHHHHHHHhcCCceeecCCCCCHHHHhhhhh---------eE
Confidence 3455666654 356889999999988864 4578899999999999882 345555442221 22
Q ss_pred eccCCccccccHHHHHh--hc--CCCCccccccccccccccc----cc-ccchhhHHHHhhcCCCCCc-----HHHHHHH
Q 019244 129 LTVDTPRLGRREADIKN--RF--TLPPFLTLKNFQGLDLGKM----DE-ANDSGLAAYVAGQIDRSLS-----WKDVKWL 194 (344)
Q Consensus 129 ~tvd~~~~g~r~~~~~~--~~--~~~~g~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~-----~~~i~~i 194 (344)
..+....+|.+...... .+ .+.+|..+...+.++...+ +. .+.+..++.+++.+++++. .+.|+++
T Consensus 129 ~q~~~~~fGv~~~~~~~~~~ieik~~QGAkpg~gg~l~~~Kv~~eiA~~r~~~~g~~~isp~~~~~~~~~~~l~~~I~~l 208 (392)
T cd02808 129 KQVASGRFGVRPEYLNKADAIEIKIGQGAKPGEGGHLPGEKVTEEIAKIRGIPPGVDLISPPPHHDIYSIEDLAQLIEDL 208 (392)
T ss_pred EEecCCCCccCHHHcccCcEEEEEeccCCCCCCCCccccccCCHHHHHHhCCCCCccccCCCCCCCCCCHHHHHHHHHHH
Confidence 33334456665544321 11 1223332222222322211 11 2455677888888888874 4579999
Q ss_pred HHhcC-CcEEEEeec--CHHHHHHHHHcC-CcEEEEccCCCCC--------CCCchhhHHHHHHHHHHc-----cCCCcE
Q 019244 195 QTITK-LPILVKGVL--TAEDARIAVQAG-AAGIIVSNHGARQ--------LDYVPATIMALEEVVKAT-----QGRIPV 257 (344)
Q Consensus 195 ~~~~~-~PvivK~v~--~~~~a~~~~~~G-~d~I~v~~~gG~~--------~~~g~~~~~~l~~i~~~~-----~~~~~v 257 (344)
|+.++ +||++|++. +.+++..+.+.| +|+|+|+|++|.+ .++|.|+..+|.++++.+ +.++||
T Consensus 209 r~~~~~~pV~vK~~~~~~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L~~v~~~~~~~~~~~~i~v 288 (392)
T cd02808 209 REATGGKPIGVKLVAGHGEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLARAHQALVKNGLRDRVSL 288 (392)
T ss_pred HHhCCCceEEEEECCCCCHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHHHHHHHHHHHHHHcCCCCCCeE
Confidence 99998 999999986 467766666666 9999999996542 457899999999998765 347999
Q ss_pred EEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhc-----------------------------ChHHHHHHHHHHHHH
Q 019244 258 FLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAE-----------------------------GEKGVRRVLEMLREE 308 (344)
Q Consensus 258 ia~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~-----------------------------G~~~v~~~l~~l~~e 308 (344)
|++|||+++.|++|+|+||||+|++||+++++++|. |.++|.++++.+.+|
T Consensus 289 iasGGI~~g~Dv~kalaLGAd~V~ig~~~l~al~c~~~~~c~~~~cP~Giat~~~~~~~~~~~~~~~~~v~~~~~~~~~e 368 (392)
T cd02808 289 IASGGLRTGADVAKALALGADAVGIGTAALIALGCIQARKCHTNTCPVGVATQDPELRRRLDVEGKAERVANYLKSLAEE 368 (392)
T ss_pred EEECCCCCHHHHHHHHHcCCCeeeechHHHHhcchHHHHhcCCCCCCcccccCChHhhhhcCCchHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999987654 788999999999999
Q ss_pred HHHHHHHhCCCCHhhhccccee
Q 019244 309 FELAMALSGCRSLKEITRDHIV 330 (344)
Q Consensus 309 l~~~m~~~G~~~i~~l~~~~l~ 330 (344)
|+.+|..+|++++++|++.++.
T Consensus 369 l~~~m~~~G~~~~~~l~~~~l~ 390 (392)
T cd02808 369 LRELAAALGKRSLELLGRSDLL 390 (392)
T ss_pred HHHHHHHhCCCChHHCCHHHhh
Confidence 9999999999999999988774
|
GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor. |
| >TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-27 Score=224.39 Aligned_cols=258 Identities=20% Similarity=0.249 Sum_probs=188.0
Q ss_pred cccccceeecc--cCCCCCCCcceeeccc-----ccccceeecccccccccCChhhHHHHHHHHHcCCcc-ccC--CHHH
Q 019244 42 AFSRILFRPRI--LIDVSKIDMNTTVLGF-----KISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM-VYK--DRNV 111 (344)
Q Consensus 42 ~f~~i~l~pr~--l~~~~~vd~st~l~g~-----~l~~Pi~iapm~~~~~~~~~~~~~lA~aA~~~g~~~-~~~--d~~~ 111 (344)
.||++.|+|+. +.+.++|||+++|..+ .+..||+-|+|.. -++..+|.+-++.|... +++ +.+.
T Consensus 9 ~f~DVll~P~~s~v~sR~evdl~~~~~~~~~~~~~~~iPii~AnMdt------v~~~~mA~~la~~g~~~~iHk~~~~e~ 82 (343)
T TIGR01305 9 DFKDVLLRPKRSTLKSRADVELERTFTFRNSKQTYSGVPIIAANMDT------VGTFEMAAALSQHSIFTAIHKHYSVDE 82 (343)
T ss_pred CccceEEecCcCccCcHHHceeeEEEccccCCceeeCCceEecCCCc------ccCHHHHHHHHHCCCeEEEeeCCCHHH
Confidence 69999999984 3466899999999744 7899999999952 25678999999999887 444 5666
Q ss_pred HHHHHHHHHHcCCcEEEeccCCccccccHHHHHhhcCCCCccccccccc-ccccccccccchhhHHHHhhcCCCCCcHHH
Q 019244 112 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQG-LDLGKMDEANDSGLAAYVAGQIDRSLSWKD 190 (344)
Q Consensus 112 ~~~~i~~a~~ag~~~l~~tvd~~~~g~r~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (344)
..++++.....-...+.+.+ |.++.+....- ..++. ...+.+.... ..++.....+.
T Consensus 83 ~~~~v~~~~~~~~~~~~vsv-----G~~~~d~er~~--------~L~~a~~~~d~iviD~---------AhGhs~~~i~~ 140 (343)
T TIGR01305 83 WKAFATNSSPDCLQNVAVSS-----GSSDNDLEKMT--------SILEAVPQLKFICLDV---------ANGYSEHFVEF 140 (343)
T ss_pred HHHHHHhhcccccceEEEEe-----ccCHHHHHHHH--------HHHhcCCCCCEEEEEC---------CCCcHHHHHHH
Confidence 66677665443223333332 22332221100 00000 0001111111 12344456788
Q ss_pred HHHHHHhcCCcEEEEe-ecCHHHHHHHHHcCCcEEEEc-----cCCCCCCCCc-hhhHHHHHHHHHHccC-CCcEEEecC
Q 019244 191 VKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVS-----NHGARQLDYV-PATIMALEEVVKATQG-RIPVFLDGG 262 (344)
Q Consensus 191 i~~i~~~~~~PvivK~-v~~~~~a~~~~~~G~d~I~v~-----~~gG~~~~~g-~~~~~~l~~i~~~~~~-~~~via~GG 262 (344)
|+|||+.|+.+.++|+ +.|+++++.++++|||+|.|+ ++++|+.++. .|+++++++++++.+. ++|||+|||
T Consensus 141 ik~ir~~~p~~~viaGNV~T~e~a~~Li~aGAD~ikVgiGpGSicttR~~~Gvg~pqltAv~~~a~aa~~~~v~VIaDGG 220 (343)
T TIGR01305 141 VKLVREAFPEHTIMAGNVVTGEMVEELILSGADIVKVGIGPGSVCTTRTKTGVGYPQLSAVIECADAAHGLKGHIISDGG 220 (343)
T ss_pred HHHHHhhCCCCeEEEecccCHHHHHHHHHcCCCEEEEcccCCCcccCceeCCCCcCHHHHHHHHHHHhccCCCeEEEcCC
Confidence 9999999977777777 899999999999999999998 6777887764 4999999999998866 799999999
Q ss_pred CCCHHHHHHHHHcCCCEEEEchHH--------------------HHHhhh-----------------cChH-------HH
Q 019244 263 VRRGTDVFKALALGASGIFIGRPV--------------------VYSLAA-----------------EGEK-------GV 298 (344)
Q Consensus 263 Ir~g~dv~kalalGAd~V~ig~~~--------------------l~~~~~-----------------~G~~-------~v 298 (344)
||++.||+|||++|||+||+|+.| ++++++ +|.+ .+
T Consensus 221 Ir~~gDI~KALA~GAd~VMlG~llAG~~Espg~~i~~~G~~~K~yrGMgS~~Am~~~~g~~~ry~~~EG~e~~vp~kG~v 300 (343)
T TIGR01305 221 CTCPGDVAKAFGAGADFVMLGGMFAGHTESGGEVIERNGRKFKLFYGMSSDTAMKKHAGGVAEYRASEGKTVEVPYRGDV 300 (343)
T ss_pred cCchhHHHHHHHcCCCEEEECHhhhCcCcCcceeEeECCEEEEEEeccchHHHHhhccCcccccccccCceEEeccCCcH
Confidence 999999999999999999999876 122221 1110 28
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCHhhhccc
Q 019244 299 RRVLEMLREEFELAMALSGCRSLKEITRD 327 (344)
Q Consensus 299 ~~~l~~l~~el~~~m~~~G~~~i~~l~~~ 327 (344)
.+++.++...|+..|.++|+.+++||+++
T Consensus 301 ~~~l~~l~gGlrs~m~Y~Ga~~i~el~~~ 329 (343)
T TIGR01305 301 ENTILDILGGLRSACTYVGAAKLKELSKR 329 (343)
T ss_pred HHHHHHHHHHHHHHhhccCcCcHHHHHhC
Confidence 89999999999999999999999999654
|
A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences. |
| >PRK08649 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.1e-25 Score=212.38 Aligned_cols=275 Identities=20% Similarity=0.270 Sum_probs=176.9
Q ss_pred hcccccceeecccC--CCCCCCcceeecccccccceeecccccccccCChhhHHHHHHHHHcCCcc-cc--------CCH
Q 019244 41 NAFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM-VY--------KDR 109 (344)
Q Consensus 41 ~~f~~i~l~pr~l~--~~~~vd~st~l~g~~l~~Pi~iapm~~~~~~~~~~~~~lA~aA~~~g~~~-~~--------~d~ 109 (344)
..||++.|+|. ++ +.++|||++.+.+..+..||+++||++ . .+..+|.+.+++|... +. .++
T Consensus 16 ~~fddV~lvp~-~~~~~~~dvdls~~~~~~~i~~Piv~a~M~g--V----t~~~la~avs~~GglGvl~~~gl~~~~~~~ 88 (368)
T PRK08649 16 YGLDEIAIVPS-RRTRDPEDVSTSWQIDAYRFEIPIIASPMDA--V----VSPETAIELGKLGGLGVLNLEGLWTRYEDP 88 (368)
T ss_pred CCcceEEEeCC-CCCCCHHHceeeeeecceeccCcEeccCCcc--c----CCHHHHHHHHhCCCceEEeeccccccCCCH
Confidence 36999999999 65 457899999998999999999999964 2 3446999999999853 22 244
Q ss_pred HHHHHHHHHH---------HHcCCcEEEeccCCccccccHHHHHhhcCCCC--ccccccccc----c---cccccccccc
Q 019244 110 NVVAQLVRRA---------ERAGFKAIALTVDTPRLGRREADIKNRFTLPP--FLTLKNFQG----L---DLGKMDEAND 171 (344)
Q Consensus 110 ~~~~~~i~~a---------~~ag~~~l~~tvd~~~~g~r~~~~~~~~~~~~--g~~~~~~~~----~---~~~~~~~~~~ 171 (344)
+.....+... ++.+.+ ..+......+-+.++.. ..+. +....+... + ..+.+..+..
T Consensus 89 e~l~~qi~~~~~~~~~~~~~~~~~~----P~~p~l~~~iv~~~~~~-~V~v~vr~~~~~~~e~a~~l~eaGvd~I~vhgr 163 (368)
T PRK08649 89 EPILDEIASLGKDEATRLMQELYAE----PIKPELITERIAEIRDA-GVIVAVSLSPQRAQELAPTVVEAGVDLFVIQGT 163 (368)
T ss_pred HHHHHHHHhcCcHHHHHHHHHhhcC----CCCHHHHHHHHHHHHhC-eEEEEEecCCcCHHHHHHHHHHCCCCEEEEecc
Confidence 4433333221 111111 00100011111112211 0000 000000000 0 0000000000
Q ss_pred hhhHHHHhhcCCCCCcHHHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCC------CCCCchhhHHHHH
Q 019244 172 SGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR------QLDYVPATIMALE 245 (344)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~------~~~~g~~~~~~l~ 245 (344)
..-+++ .+..-.|+.+.++++..++||+++.+.|.++++.+.++|||+|.++..+|+ ...++.|++.++.
T Consensus 164 t~~~~h----~~~~~~~~~i~~~ik~~~ipVIaG~V~t~e~A~~l~~aGAD~V~VG~G~Gs~~~t~~~~g~g~p~~~ai~ 239 (368)
T PRK08649 164 VVSAEH----VSKEGEPLNLKEFIYELDVPVIVGGCVTYTTALHLMRTGAAGVLVGIGPGAACTSRGVLGIGVPMATAIA 239 (368)
T ss_pred chhhhc----cCCcCCHHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHcCCCEEEECCCCCcCCCCcccCCCCcCHHHHHH
Confidence 000010 111125777777777789999998899999999999999999999754442 1334678888888
Q ss_pred HHHHHcc--------CCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHH-----------hhh------cCh-----
Q 019244 246 EVVKATQ--------GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS-----------LAA------EGE----- 295 (344)
Q Consensus 246 ~i~~~~~--------~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~-----------~~~------~G~----- 295 (344)
++++..+ .++|||++|||+++.|++|||++|||+||+|++|... +++ +|.
T Consensus 240 ~~~~a~~~~l~~~~~~~vpVIAdGGI~~~~diakAlalGAd~Vm~Gs~fa~t~Espg~~~~~gm~s~~~~~~eg~~~~~~ 319 (368)
T PRK08649 240 DVAAARRDYLDETGGRYVHVIADGGIGTSGDIAKAIACGADAVMLGSPLARAAEAPGRGWHWGMAAPHPSLPRGTRIKVG 319 (368)
T ss_pred HHHHHHHHhhhhhcCCCCeEEEeCCCCCHHHHHHHHHcCCCeecccchhcccccCCCcccccCcccCCCcCCCceEEeCC
Confidence 8865421 1599999999999999999999999999999998542 221 111
Q ss_pred --HHHHHHHH----------HHHHHHHHHHHHhCCCCHhhhcccceee
Q 019244 296 --KGVRRVLE----------MLREEFELAMALSGCRSLKEITRDHIVT 331 (344)
Q Consensus 296 --~~v~~~l~----------~l~~el~~~m~~~G~~~i~~l~~~~l~~ 331 (344)
-.+++++. ++...|++.|.++|+++|+||++..++.
T Consensus 320 ~~g~~~~~~~~~~~~~~~~~~~~g~l~~~m~~~g~~~~~~~~~~~~~~ 367 (368)
T PRK08649 320 TTGSLEQILFGPSHLPDGTHNLVGALRRSMATLGYSDLKEFQKVEVVV 367 (368)
T ss_pred CcCcHHHHhcCcccccchHHHHHHHHHHHHHhcCCCcHHHHhhcCeEe
Confidence 13778877 9999999999999999999999887764
|
|
| >PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.5e-24 Score=200.11 Aligned_cols=258 Identities=20% Similarity=0.197 Sum_probs=186.0
Q ss_pred cccccceeeccc--CCCCCCCcceeec-----ccccccceeecccccccccCChhhHHHHHHHHHcCCcc-ccC--CHHH
Q 019244 42 AFSRILFRPRIL--IDVSKIDMNTTVL-----GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM-VYK--DRNV 111 (344)
Q Consensus 42 ~f~~i~l~pr~l--~~~~~vd~st~l~-----g~~l~~Pi~iapm~~~~~~~~~~~~~lA~aA~~~g~~~-~~~--d~~~ 111 (344)
.|+++.|+|+.- .+.++|||+.+|. .+.+..||+-|+|.. -++..+|.+-++.|... +++ +.+.
T Consensus 10 ~f~DVll~P~~s~v~sRsevdl~~~~~~~~~~~~~~giPii~AnMdT------V~~~~mA~~la~~g~~~~iHk~~~~e~ 83 (346)
T PRK05096 10 GFKDVLIRPKRSTLKSRSDVELERQFTFKHSGQSWSGVPIIAANMDT------VGTFEMAKALASFDILTAVHKHYSVEE 83 (346)
T ss_pred CceeEEEecCcCccccHHHceecceeeeecccccccCCceEecCCCc------cccHHHHHHHHHCCCeEEEecCCCHHH
Confidence 699999999853 4557999988885 345669999999952 25678999999999887 555 5666
Q ss_pred HHHHHHHHHHcCCcEEEeccCCccccccHHHHHhhcCCCCccccccccc-ccccccccccchhhHHHHhhcCCCCCcHHH
Q 019244 112 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQG-LDLGKMDEANDSGLAAYVAGQIDRSLSWKD 190 (344)
Q Consensus 112 ~~~~i~~a~~ag~~~l~~tvd~~~~g~r~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (344)
..++++..+......+.+.+. .++.+....- ..++. ...+.+.... ..++.....+.
T Consensus 84 ~~~fv~~~~~~~~~~~~vavG-----~~~~d~er~~--------~L~~~~~g~D~iviD~---------AhGhs~~~i~~ 141 (346)
T PRK05096 84 WAAFVNNSSADVLKHVMVSTG-----TSDADFEKTK--------QILALSPALNFICIDV---------ANGYSEHFVQF 141 (346)
T ss_pred HHHHHHhccccccceEEEEec-----CCHHHHHHHH--------HHHhcCCCCCEEEEEC---------CCCcHHHHHHH
Confidence 667777766443343444332 2332221100 00000 0011111111 12344446678
Q ss_pred HHHHHHhc-CCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCC------CCCchhhHHHHHHHHHHccC-CCcEEEecC
Q 019244 191 VKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ------LDYVPATIMALEEVVKATQG-RIPVFLDGG 262 (344)
Q Consensus 191 i~~i~~~~-~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~------~~~g~~~~~~l~~i~~~~~~-~~~via~GG 262 (344)
|++||+.+ +++||...+.|++.++.++++|||+|.|.-..|+- .-.|.|++.++.+++++.+. .+|||+|||
T Consensus 142 ik~ik~~~P~~~vIaGNV~T~e~a~~Li~aGAD~vKVGIGpGSiCtTr~vtGvG~PQltAV~~~a~~a~~~gvpiIADGG 221 (346)
T PRK05096 142 VAKAREAWPDKTICAGNVVTGEMVEELILSGADIVKVGIGPGSVCTTRVKTGVGYPQLSAVIECADAAHGLGGQIVSDGG 221 (346)
T ss_pred HHHHHHhCCCCcEEEecccCHHHHHHHHHcCCCEEEEcccCCccccCccccccChhHHHHHHHHHHHHHHcCCCEEecCC
Confidence 99999998 69999999999999999999999999998665642 23478999999999887643 799999999
Q ss_pred CCCHHHHHHHHHcCCCEEEEchHH--------------------HHHhhhc-----------------ChH-------HH
Q 019244 263 VRRGTDVFKALALGASGIFIGRPV--------------------VYSLAAE-----------------GEK-------GV 298 (344)
Q Consensus 263 Ir~g~dv~kalalGAd~V~ig~~~--------------------l~~~~~~-----------------G~~-------~v 298 (344)
|++..|++|||++|||+||+|+.| ++++++. |.+ .+
T Consensus 222 i~~sGDI~KAlaaGAd~VMlGsllAGt~EsPGe~~~~~G~~~K~yrGMgS~~Am~~~~g~~~ry~~~EG~~~~Vp~kG~v 301 (346)
T PRK05096 222 CTVPGDVAKAFGGGADFVMLGGMLAGHEESGGEIVEENGEKFMLFYGMSSESAMKRHVGGVAEYRAAEGKTVKLPLRGPV 301 (346)
T ss_pred cccccHHHHHHHcCCCEEEeChhhcCcccCCCcEEEECCEEEEEEeccccHHHHhhccCcccccccccCceEEeccCCcH
Confidence 999999999999999999999988 2333221 110 28
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCHhhhccc
Q 019244 299 RRVLEMLREEFELAMALSGCRSLKEITRD 327 (344)
Q Consensus 299 ~~~l~~l~~el~~~m~~~G~~~i~~l~~~ 327 (344)
.+++.++...|+..|.++|+++|.||++.
T Consensus 302 ~~~i~~l~gGlrs~m~Y~Ga~~i~el~~~ 330 (346)
T PRK05096 302 ENTARDILGGLRSACTYVGASRLKELTKR 330 (346)
T ss_pred HHHHHHHHHHHHHHHcccCcCcHHHHHhC
Confidence 89999999999999999999999999654
|
|
| >cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.5e-23 Score=199.51 Aligned_cols=257 Identities=24% Similarity=0.342 Sum_probs=177.5
Q ss_pred cccccceeeccc-CCCCCCCcceeecc-cccccceeecccccccccCChhhHHHHHHHHHcCCcc-cc--CCHHHHHHHH
Q 019244 42 AFSRILFRPRIL-IDVSKIDMNTTVLG-FKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM-VY--KDRNVVAQLV 116 (344)
Q Consensus 42 ~f~~i~l~pr~l-~~~~~vd~st~l~g-~~l~~Pi~iapm~~~~~~~~~~~~~lA~aA~~~g~~~-~~--~d~~~~~~~i 116 (344)
.||++.|+|... .+.++||++|.|.+ ..++.||+.+||.+. .+..+|.+.+++|... ++ .+.+...+.+
T Consensus 3 ~~ddv~l~p~~~~~~~~~vdl~t~l~~~~~l~~Piv~apM~~v------t~~~ma~ava~~GglGvi~~~~~~~~~~~~i 76 (325)
T cd00381 3 TFDDVLLVPGYSTVLPSEVDLSTKLTKNITLNIPLVSAPMDTV------TESEMAIAMARLGGIGVIHRNMSIEEQAEEV 76 (325)
T ss_pred CcccEEEeCCCCCCCHHHceeeEEecCccccCCCEEecCCCcC------CcHHHHHHHHHCCCEEEEeCCCCHHHHHHHH
Confidence 599999999864 35788999999988 889999999999753 2446888888988754 22 2444455566
Q ss_pred HHHHHcCCcEEEeccCCccccccHHHHHhhcCCCCcccccccccccccccccccchhhHHHHhhcCCCCCcHHHHHHHHH
Q 019244 117 RRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQT 196 (344)
Q Consensus 117 ~~a~~ag~~~l~~tvd~~~~g~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~ 196 (344)
++++. . +.+.... +.++.+.... ...++. ..+.+... ...++++..++.++++++
T Consensus 77 ~~vk~--~--l~v~~~~---~~~~~~~~~~--------~~l~ea-gv~~I~vd---------~~~G~~~~~~~~i~~ik~ 131 (325)
T cd00381 77 RKVKG--R--LLVGAAV---GTREDDKERA--------EALVEA-GVDVIVID---------SAHGHSVYVIEMIKFIKK 131 (325)
T ss_pred HHhcc--C--ceEEEec---CCChhHHHHH--------HHHHhc-CCCEEEEE---------CCCCCcHHHHHHHHHHHH
Confidence 66642 1 1111111 1111110000 000000 00000000 011223334567999999
Q ss_pred hcC-CcEEEEeecCHHHHHHHHHcCCcEEEEccCCCC------CCCCchhhHHHHHHHHHHccC-CCcEEEecCCCCHHH
Q 019244 197 ITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR------QLDYVPATIMALEEVVKATQG-RIPVFLDGGVRRGTD 268 (344)
Q Consensus 197 ~~~-~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~------~~~~g~~~~~~l~~i~~~~~~-~~~via~GGIr~g~d 268 (344)
..+ +||++..+.+.++++.+.++|+|+|+|+..+|. ...++.|++.++.++.+.+.. ++|||++|||+++.|
T Consensus 132 ~~p~v~Vi~G~v~t~~~A~~l~~aGaD~I~vg~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~~~~vpVIA~GGI~~~~d 211 (325)
T cd00381 132 KYPNVDVIAGNVVTAEAARDLIDAGADGVKVGIGPGSICTTRIVTGVGVPQATAVADVAAAARDYGVPVIADGGIRTSGD 211 (325)
T ss_pred HCCCceEEECCCCCHHHHHHHHhcCCCEEEECCCCCcCcccceeCCCCCCHHHHHHHHHHHHhhcCCcEEecCCCCCHHH
Confidence 874 899998889999999999999999999643332 134678899999988877643 699999999999999
Q ss_pred HHHHHHcCCCEEEEchHHHHH--------------------hhh----------------------cCh-------HHHH
Q 019244 269 VFKALALGASGIFIGRPVVYS--------------------LAA----------------------EGE-------KGVR 299 (344)
Q Consensus 269 v~kalalGAd~V~ig~~~l~~--------------------~~~----------------------~G~-------~~v~ 299 (344)
++|+|++||++||+|+.|.-. ++. +|. -.+.
T Consensus 212 i~kAla~GA~~VmiGt~fa~t~Es~g~~~~~~g~~~~~~~g~~s~~~~~~~~~~~~~~~~~~~~~~eg~~~~v~~~g~~~ 291 (325)
T cd00381 212 IVKALAAGADAVMLGSLLAGTDESPGEYIEINGKRYKEYRGMGSLGAMKKGGGDRYFGEEAKKLVPEGVEGIVPYKGSVK 291 (325)
T ss_pred HHHHHHcCCCEEEecchhcccccCCCcEEEECCeeeeeEecccchhhhhcCccccccccccccccCCceEEEEecCCcHH
Confidence 999999999999999998431 110 010 1388
Q ss_pred HHHHHHHHHHHHHHHHhCCCCHhhhcccce
Q 019244 300 RVLEMLREEFELAMALSGCRSLKEITRDHI 329 (344)
Q Consensus 300 ~~l~~l~~el~~~m~~~G~~~i~~l~~~~l 329 (344)
+.+.++...|+..|.++|+.+|+||++...
T Consensus 292 ~~~~~~~~glr~~~~y~G~~~l~~~~~~~~ 321 (325)
T cd00381 292 DVLPQLVGGLRSSMGYCGAKSLKELQEKAR 321 (325)
T ss_pred HHHHHHHHHHHHHHHhcCCCcHHHHHhcCe
Confidence 999999999999999999999999987754
|
IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents. |
| >PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-23 Score=201.52 Aligned_cols=258 Identities=22% Similarity=0.326 Sum_probs=169.8
Q ss_pred cccccceeecc---cCCCCCCCcceee-cccccccceeecccccccccCChhhHHHHHHHHHcCCcc-ccC--CHHHHHH
Q 019244 42 AFSRILFRPRI---LIDVSKIDMNTTV-LGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM-VYK--DRNVVAQ 114 (344)
Q Consensus 42 ~f~~i~l~pr~---l~~~~~vd~st~l-~g~~l~~Pi~iapm~~~~~~~~~~~~~lA~aA~~~g~~~-~~~--d~~~~~~ 114 (344)
.||++.|+|.. +++..++||++.+ -+.+++.||+-|||.. -.+..+|.+-++.|... +++ ..+...+
T Consensus 4 tfdDVllvP~~s~v~~s~~dv~~~~~~~~~~~l~iPivsa~MDt------Vte~~mAiama~~Gglgvih~~~~~e~q~~ 77 (352)
T PF00478_consen 4 TFDDVLLVPGRSTVLPSRSDVSLSTKLTRNITLKIPIVSAPMDT------VTESEMAIAMARLGGLGVIHRNMSIEEQAE 77 (352)
T ss_dssp -GGGEEEE--SBSSTGGGGG-BEEEESSTSEEESSSEEE-SSTT------TSSHHHHHHHHHTTSEEEEESSSCHHHHHH
T ss_pred ccccEEEecCCCCCCCCHhheECcccccCCEeecCceEecCccc------cchHHHHHHHHHhcCCceecCCCCHHHHHH
Confidence 59999999987 3556667777656 5789999999999953 14557999989998766 333 3444445
Q ss_pred HHHHHHHc---------CCcEEEeccCCccccccHHHHHhhcCCCCcccccccccccccccccccchhhHHHHhhcCCCC
Q 019244 115 LVRRAERA---------GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 185 (344)
Q Consensus 115 ~i~~a~~a---------g~~~l~~tvd~~~~g~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (344)
.+++.++. +--.+...+.+.. ...+... .+.....+.+... ...++..
T Consensus 78 ~v~~vK~~~~~a~~d~~~~l~V~aavg~~~---~~~er~~-----------~L~~agvD~ivID---------~a~g~s~ 134 (352)
T PF00478_consen 78 EVKKVKRYYPNASKDEKGRLLVAAAVGTRD---DDFERAE-----------ALVEAGVDVIVID---------SAHGHSE 134 (352)
T ss_dssp HHHHHHTHHTTHHBHTTSCBCEEEEEESST---CHHHHHH-----------HHHHTT-SEEEEE----------SSTTSH
T ss_pred HHhhhccccccccccccccceEEEEecCCH---HHHHHHH-----------HHHHcCCCEEEcc---------ccCccHH
Confidence 56666542 0000000010000 0000000 0000000001000 0123333
Q ss_pred CcHHHHHHHHHhcC-CcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCC------CCCchhhHHHHHHHHHHccC-CCcE
Q 019244 186 LSWKDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ------LDYVPATIMALEEVVKATQG-RIPV 257 (344)
Q Consensus 186 ~~~~~i~~i~~~~~-~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~------~~~g~~~~~~l~~i~~~~~~-~~~v 257 (344)
...+.+++|++.++ +||++..+.|.+.++.++++|||+|.|.-.+|.. .-.|.|++.++.+++++..+ .+||
T Consensus 135 ~~~~~ik~ik~~~~~~~viaGNV~T~e~a~~L~~aGad~vkVGiGpGsiCtTr~v~GvG~PQ~tAv~~~a~~a~~~~v~i 214 (352)
T PF00478_consen 135 HVIDMIKKIKKKFPDVPVIAGNVVTYEGAKDLIDAGADAVKVGIGPGSICTTREVTGVGVPQLTAVYECAEAARDYGVPI 214 (352)
T ss_dssp HHHHHHHHHHHHSTTSEEEEEEE-SHHHHHHHHHTT-SEEEESSSSSTTBHHHHHHSBSCTHHHHHHHHHHHHHCTTSEE
T ss_pred HHHHHHHHHHHhCCCceEEecccCCHHHHHHHHHcCCCEEEEeccCCcccccccccccCCcHHHHHHHHHHHhhhccCce
Confidence 35568999999995 9999999999999999999999999998766642 23478999999999887643 7999
Q ss_pred EEecCCCCHHHHHHHHHcCCCEEEEchHH--------------------HHHhhh------------------------c
Q 019244 258 FLDGGVRRGTDVFKALALGASGIFIGRPV--------------------VYSLAA------------------------E 293 (344)
Q Consensus 258 ia~GGIr~g~dv~kalalGAd~V~ig~~~--------------------l~~~~~------------------------~ 293 (344)
|+||||+++.|++|||++|||+||+|+.| ++++++ +
T Consensus 215 IADGGi~~sGDi~KAla~GAd~VMlG~llAgt~EsPG~~~~~~g~~~K~yrGMgS~~A~~~~~~~~~ry~~~~~~~~v~e 294 (352)
T PF00478_consen 215 IADGGIRTSGDIVKALAAGADAVMLGSLLAGTDESPGEVIYIDGKRYKKYRGMGSLGAMKKRRGSGDRYFQAEDKKFVPE 294 (352)
T ss_dssp EEESS-SSHHHHHHHHHTT-SEEEESTTTTTBTTSSSEEEEETTEEEEEEEETTSHHHHHHHSTTGCTCTSSTSSTSSSS
T ss_pred eecCCcCcccceeeeeeecccceeechhhccCcCCCCceEEECCeEEEEecccccHHHHhhccccchhcccccccccccc
Confidence 99999999999999999999999999987 122211 1
Q ss_pred ChH-------HHHHHHHHHHHHHHHHHHHhCCCCHhhhcccc
Q 019244 294 GEK-------GVRRVLEMLREEFELAMALSGCRSLKEITRDH 328 (344)
Q Consensus 294 G~~-------~v~~~l~~l~~el~~~m~~~G~~~i~~l~~~~ 328 (344)
|.+ .+.+++..|...|+..|.++|+++|.||++..
T Consensus 295 Gve~~vp~~G~v~~~l~~l~gglrs~m~y~Ga~~i~el~~~~ 336 (352)
T PF00478_consen 295 GVEGLVPYKGSVSDILPQLVGGLRSGMGYVGARSIKELRKKA 336 (352)
T ss_dssp BEEEEEE-BB-HHHHHHHHHHHHHHHHHHTTSSBHHHHHHHH
T ss_pred ceeecCCCCCCHHHHHHHHHHHHHHHHHhcCcccHHHHHhCC
Confidence 111 38899999999999999999999999998774
|
These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. |
| >PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots [] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.5e-24 Score=204.84 Aligned_cols=243 Identities=25% Similarity=0.266 Sum_probs=150.5
Q ss_pred cccccceeecccccccccCChhhHHHHHHHHHcCCcccc----CCHHHHHHHHHHHHHcCCcEEEeccCCccccccHHHH
Q 019244 68 FKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMVY----KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADI 143 (344)
Q Consensus 68 ~~l~~Pi~iapm~~~~~~~~~~~~~lA~aA~~~g~~~~~----~d~~~~~~~i~~a~~ag~~~l~~tvd~~~~g~r~~~~ 143 (344)
.+++.||+|++|+++.++ +++..+||+++++.|+.+.. .+++... .+.+..++.+....+|.+...+
T Consensus 62 ~~l~~p~~is~MS~GaLS-~~a~~Ala~ga~~~G~~~ntGEGg~~~~~~~--------~~~~~~I~Q~~sg~fGv~~~~l 132 (368)
T PF01645_consen 62 LELSIPFMISAMSYGALS-EEAKEALAKGANMAGTASNTGEGGELPEERK--------AAKDLRIKQIASGRFGVRPEYL 132 (368)
T ss_dssp HHHHTTEEEEEB-CTTC--HHHHHHHHHHHHHCT-EEEETTT---GGGCS--------B-TTSSEEEE-TT-TT--HHHH
T ss_pred hhheeeeecccCChhhcC-HHHHHHHHHHHHHhCceEecCCCCCCHHHhc--------ccCCceEEEcCCCCCCCCHHHh
Confidence 467899999999999877 56889999999999998821 2222111 0111124566677778876655
Q ss_pred Hhh--cC--CCCccccccccccccccccc-----ccchhhHHHHhhcCCCCC-cH----HHHHHHHHhc-CCcEEEEeec
Q 019244 144 KNR--FT--LPPFLTLKNFQGLDLGKMDE-----ANDSGLAAYVAGQIDRSL-SW----KDVKWLQTIT-KLPILVKGVL 208 (344)
Q Consensus 144 ~~~--~~--~~~g~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-~~----~~i~~i~~~~-~~PvivK~v~ 208 (344)
+.. ++ +.+|..+...+.++...+.. +...+....++|..++++ +. +.|++||+.. ++||.+|.+.
T Consensus 133 ~~a~~iEIKigQGAKpG~GG~Lp~~KV~~~ia~~R~~~~g~~~iSP~~h~di~s~edl~~~I~~Lr~~~~~~pVgvKl~~ 212 (368)
T PF01645_consen 133 KQADMIEIKIGQGAKPGEGGHLPGEKVTEEIARIRGVPPGVDLISPPPHHDIYSIEDLAQLIEELRELNPGKPVGVKLVA 212 (368)
T ss_dssp CC-SEEEEE---TTSTTT--EE-GGG--HHHHHHHTS-TT--EE--SS-TT-SSHHHHHHHHHHHHHH-TTSEEEEEEE-
T ss_pred cCCCeEEEEEecCccccCcceechhhchHHHHHHhCCCCCCccccCCCCCCcCCHHHHHHHHHHHHhhCCCCcEEEEECC
Confidence 532 22 34444444444444433321 122334456666666665 33 3589999998 7999999984
Q ss_pred --CHHHH-HHHHHcCCcEEEEccC-CCCC-------CCCchhhHHHHHHHHHHc-----cCCCcEEEecCCCCHHHHHHH
Q 019244 209 --TAEDA-RIAVQAGAAGIIVSNH-GARQ-------LDYVPATIMALEEVVKAT-----QGRIPVFLDGGVRRGTDVFKA 272 (344)
Q Consensus 209 --~~~~a-~~~~~~G~d~I~v~~~-gG~~-------~~~g~~~~~~l~~i~~~~-----~~~~~via~GGIr~g~dv~ka 272 (344)
..++. ..+.++|+|+|+++++ ||+. .++|.|+...|.++.+.+ ++++.|+++||++++.|++|+
T Consensus 213 ~~~~~~~~~~~~~ag~D~ItIDG~~GGTGAap~~~~d~~GlP~~~~l~~a~~~L~~~glr~~V~Li~sGgl~t~~dv~ka 292 (368)
T PF01645_consen 213 GRGVEDIAAGAAKAGADFITIDGAEGGTGAAPLTSMDHVGLPTEYALARAHQALVKNGLRDRVSLIASGGLRTGDDVAKA 292 (368)
T ss_dssp STTHHHHHHHHHHTT-SEEEEE-TT---SSEECCHHHHC---HHHHHHHHHHHHHCTT-CCCSEEEEESS--SHHHHHHH
T ss_pred CCcHHHHHHhhhhccCCEEEEeCCCCCCCCCchhHHhhCCCcHHHHHHHHHHHHHHcCCCCceEEEEeCCccCHHHHHHH
Confidence 23444 3489999999999986 4543 247899999999888775 468999999999999999999
Q ss_pred HHcCCCEEEEchHHHHHhhhc-----------------------------ChHHHHHHHHHHHHHHHHHHHHhCCC
Q 019244 273 LALGASGIFIGRPVVYSLAAE-----------------------------GEKGVRRVLEMLREEFELAMALSGCR 319 (344)
Q Consensus 273 lalGAd~V~ig~~~l~~~~~~-----------------------------G~~~v~~~l~~l~~el~~~m~~~G~~ 319 (344)
++||||+|.+||++|+++.|. +.+.|.+++..+.+||+..|..+|.+
T Consensus 293 laLGAD~v~igt~~liAlGC~~~~~C~~~~CP~Giatq~~~l~~~l~~~~~~~~v~n~~~~~~~el~~~~~a~G~~ 368 (368)
T PF01645_consen 293 LALGADAVYIGTAALIALGCIQCRKCHTGTCPVGIATQDPKLRKRLDVEEKAERVANFLKACAEELREILAALGKR 368 (368)
T ss_dssp HHCT-SEEE-SHHHHHHCT--S---CCCT--TTSSS---CCHH--CT----HHHHHHHHHHHHHHHHHHHHHHT-S
T ss_pred HhcCCCeeEecchhhhhcchHHHhcccCCCCCceeeecCcccccccccccHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999998762 35679999999999999999999974
|
This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A. |
| >TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.90 E-value=3e-22 Score=193.71 Aligned_cols=276 Identities=21% Similarity=0.264 Sum_probs=174.8
Q ss_pred hcccccceeecc-cCCCCCCCcceeecccccccceeecccccccccCChhhHHHHHHHHHcCCcc-------c--cCCHH
Q 019244 41 NAFSRILFRPRI-LIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM-------V--YKDRN 110 (344)
Q Consensus 41 ~~f~~i~l~pr~-l~~~~~vd~st~l~g~~l~~Pi~iapm~~~~~~~~~~~~~lA~aA~~~g~~~-------~--~~d~~ 110 (344)
..||+|.|+|.. -++.++|||+..+.+.++..||+.+||.+ . .+..++..+.++|.+. + +.+++
T Consensus 13 ~~~d~i~~vp~~~t~~~~~v~~~~~i~~~~l~~PivlAPMag--V----td~~fr~~~~~~Galgvvsaegl~~~~~~~~ 86 (369)
T TIGR01304 13 YSLDDISVVPSRRTRSSKDVDTAWQIDAYRFELPFIAHPMDA--L----VSPEFAIELGELGGLGVLNLEGLWGRHEDPD 86 (369)
T ss_pred CCcceEEEcCCCCCCChhhccceeEEcceecCCceeecCCCc--c----cCHHHHHHHHHcCCcccccchHHHhcCCCHH
Confidence 479999999974 46778999999998899999999999975 2 2457999999999833 1 12222
Q ss_pred HHH-------------HHHHHHHHcCCcEEEeccCCccccccHHHHHhhc-CCCCcccccccccc-------cccccccc
Q 019244 111 VVA-------------QLVRRAERAGFKAIALTVDTPRLGRREADIKNRF-TLPPFLTLKNFQGL-------DLGKMDEA 169 (344)
Q Consensus 111 ~~~-------------~~i~~a~~ag~~~l~~tvd~~~~g~r~~~~~~~~-~~~~g~~~~~~~~~-------~~~~~~~~ 169 (344)
... +..+..++.+++. ++......+-..++... .....++..+...+ ..+.+..+
T Consensus 87 ~~~~QI~g~~~~~~~a~aa~~~~e~~~~~----~~p~l~~~ii~~vr~a~VtvkiRl~~~~~~e~a~~l~eAGad~I~ih 162 (369)
T TIGR01304 87 PAIAKIAEAYEEGDQAAATRLLQELHAAP----LKPELLGERIAEVRDSGVITAVRVSPQNAREIAPIVVKAGADLLVIQ 162 (369)
T ss_pred HHHHHHhhcCCChHHHHHHHHHHHcCCCc----cChHHHHHHHHHHHhcceEEEEecCCcCHHHHHHHHHHCCCCEEEEe
Confidence 111 1111122222222 11111112222222210 00000000000000 00000000
Q ss_pred cchhhHHHHhhcCCCCCcHHHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCC----CCCchhhHHHHH
Q 019244 170 NDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ----LDYVPATIMALE 245 (344)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~----~~~g~~~~~~l~ 245 (344)
....-|++. .+.-.|..+.++++.+++||+++.+.+.++++.+.++|+|+|.++.+|+.. +..+.|+.+++.
T Consensus 163 grt~~q~~~----sg~~~p~~l~~~i~~~~IPVI~G~V~t~e~A~~~~~aGaDgV~~G~gg~~~~~~~lg~~~p~~~ai~ 238 (369)
T TIGR01304 163 GTLVSAEHV----STSGEPLNLKEFIGELDVPVIAGGVNDYTTALHLMRTGAAGVIVGPGGANTTRLVLGIEVPMATAIA 238 (369)
T ss_pred ccchhhhcc----CCCCCHHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHcCCCEEEECCCCCcccccccCCCCCHHHHHH
Confidence 000001111 112358888888888999999988999999999999999999855444422 234678888888
Q ss_pred HHHHHc-------c-CCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcC-----------------------
Q 019244 246 EVVKAT-------Q-GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEG----------------------- 294 (344)
Q Consensus 246 ~i~~~~-------~-~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G----------------------- 294 (344)
+++++. + ..+|||++|||+++.|++|+|++|||+|++|++|+.+..+.|
T Consensus 239 d~~~a~~~~~~e~g~r~vpVIAdGGI~tg~di~kAlAlGAdaV~iGt~~a~a~Eapg~~~~w~~~~~~~~~~~~~~~~~~ 318 (369)
T TIGR01304 239 DVAAARRDYLDETGGRYVHVIADGGIETSGDLVKAIACGADAVVLGSPLARAAEAPGRGYFWPAAAAHPRLPRGVVTESG 318 (369)
T ss_pred HHHHHHHHHHHhcCCCCceEEEeCCCCCHHHHHHHHHcCCCEeeeHHHHHhhhcCCCCCCccchhhcCccCCcccccccc
Confidence 776542 1 149999999999999999999999999999999976433211
Q ss_pred hHH----HHHHH----------HHHHHHHHHHHHHhCCCCHhhhccccee
Q 019244 295 EKG----VRRVL----------EMLREEFELAMALSGCRSLKEITRDHIV 330 (344)
Q Consensus 295 ~~~----v~~~l----------~~l~~el~~~m~~~G~~~i~~l~~~~l~ 330 (344)
..| +++++ .+|...|++.|..+|+.+++++++..++
T Consensus 319 ~~~~~~~~~~~~~gp~~~~~~~~n~~g~~~~~~~~~g~~~~~~~~~~~~~ 368 (369)
T TIGR01304 319 TVGEAPTLEEILHGPSTLPDGVENFEGGLKRAMAKCGYTDLKEFQKVSLT 368 (369)
T ss_pred ccCCCCcHHHHeeCCCCCCcchhhhHHHHHHHHHHcCchhhhhhhhccee
Confidence 112 55554 3788999999999999999999988764
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302. |
| >PRK06843 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.8e-22 Score=195.20 Aligned_cols=281 Identities=19% Similarity=0.236 Sum_probs=182.0
Q ss_pred hcccccceeecccC-CCCCCCcceeec-ccccccceeecccccccccCChhhHHHHHHHHHcCCcc---ccCCHHHHHHH
Q 019244 41 NAFSRILFRPRILI-DVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM---VYKDRNVVAQL 115 (344)
Q Consensus 41 ~~f~~i~l~pr~l~-~~~~vd~st~l~-g~~l~~Pi~iapm~~~~~~~~~~~~~lA~aA~~~g~~~---~~~d~~~~~~~ 115 (344)
-.||++.|+|..-. ..++||++|.|. ...+..||+-|||.+. .+..||.+.+++|... ...+++...+.
T Consensus 10 ltfdDvll~P~~s~~~~~~vdl~t~lt~~l~l~iPIvsApMd~V------t~~~lA~AvA~aGGlGvI~~~~~~e~l~~e 83 (404)
T PRK06843 10 LTFDDVSLIPRKSSVLPSEVSLKTQLTKNISLNIPFLSSAMDTV------TESQMAIAIAKEGGIGIIHKNMSIEAQRKE 83 (404)
T ss_pred cCccceEEccCCCccCHHhccccchhhhccCCCCCEecCCCCCC------CCHHHHHHHHHCCCEEEecCCCCHHHHHHH
Confidence 35999999998542 457899999986 4678999999999642 2446999999999765 23467777778
Q ss_pred HHHHHHcC-CcEEEeccCCccc---------ccc----HHHHHhhcCCCCcccccc----cc---ccccccccc--ccch
Q 019244 116 VRRAERAG-FKAIALTVDTPRL---------GRR----EADIKNRFTLPPFLTLKN----FQ---GLDLGKMDE--ANDS 172 (344)
Q Consensus 116 i~~a~~ag-~~~l~~tvd~~~~---------g~r----~~~~~~~~~~~~g~~~~~----~~---~~~~~~~~~--~~~~ 172 (344)
++++++.- .+.+..+.|.-.. +.. ..|+...-.+|......+ +. ....+.+.. ....
T Consensus 84 I~~vk~~~~~~~i~~~~d~~~~~~~~~t~~~~~~~~~~~~d~~~~~~~~~a~~d~~~~l~v~aavg~~~~~~~~v~~lv~ 163 (404)
T PRK06843 84 IEKVKTYKFQKTINTNGDTNEQKPEIFTAKQHLEKSDAYKNAEHKEDFPNACKDLNNKLRVGAAVSIDIDTIERVEELVK 163 (404)
T ss_pred HHHHHhhcCCCceeecccccccchhheeccccchHHHHHhhhhhhhhcchhhhhhhcCeEEEEEEeCCHHHHHHHHHHHh
Confidence 88877642 1222222211000 000 001110000111000000 00 000000000 0000
Q ss_pred hhHHH-H--hhcCCCCCcHHHHHHHHHhc-CCcEEEEeecCHHHHHHHHHcCCcEEEEccCCC-----CCC-CCchhhHH
Q 019244 173 GLAAY-V--AGQIDRSLSWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGA-----RQL-DYVPATIM 242 (344)
Q Consensus 173 ~~~~~-~--~~~~~~~~~~~~i~~i~~~~-~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG-----~~~-~~g~~~~~ 242 (344)
...+. + ...+++...++.++++++.+ +++|+++.+.|.++++.+.++|+|+|.++...| +.. .+|.|+++
T Consensus 164 aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~aGaD~I~vG~g~Gs~c~tr~~~g~g~p~lt 243 (404)
T PRK06843 164 AHVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLISVGADCLKVGIGPGSICTTRIVAGVGVPQIT 243 (404)
T ss_pred cCCCEEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHHcCCCEEEECCCCCcCCcceeecCCCCChHH
Confidence 00000 1 11233334567899999998 699999999999999999999999999864433 233 34678888
Q ss_pred HHHHHHHHcc-CCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHH--------------------HHhhh---------
Q 019244 243 ALEEVVKATQ-GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV--------------------YSLAA--------- 292 (344)
Q Consensus 243 ~l~~i~~~~~-~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l--------------------~~~~~--------- 292 (344)
++.++.+.+. .++|||++|||+++.|++|||++||++||+|++|. ++|++
T Consensus 244 ai~~v~~~~~~~~vpVIAdGGI~~~~Di~KALalGA~aVmvGs~~agt~Espg~~~~~~g~~~K~yrGmgS~~Am~~~~~ 323 (404)
T PRK06843 244 AICDVYEVCKNTNICIIADGGIRFSGDVVKAIAAGADSVMIGNLFAGTKESPSEEIIYNGKKFKSYVGMGSISAMKRGSK 323 (404)
T ss_pred HHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEcceeeeeecCCCcEEEECCEEEEEEeccchHHHHhcccc
Confidence 8877776653 26999999999999999999999999999999882 22211
Q ss_pred ----------------cChH-------HHHHHHHHHHHHHHHHHHHhCCCCHhhhccc
Q 019244 293 ----------------EGEK-------GVRRVLEMLREEFELAMALSGCRSLKEITRD 327 (344)
Q Consensus 293 ----------------~G~~-------~v~~~l~~l~~el~~~m~~~G~~~i~~l~~~ 327 (344)
+|.+ .+.+++.+|...|+..|.++|+.+|.||+..
T Consensus 324 ~ry~~~~~~~~~~~v~eGveg~v~~~G~v~~~~~~l~gglrs~m~y~Ga~~i~el~~~ 381 (404)
T PRK06843 324 SRYFQLENNEPKKLVPEGIEGMVPYSGKLKDILTQLKGGLMSGMGYLGAATISDLKIN 381 (404)
T ss_pred ccccccccccccccCCCccEEEecCCCCHHHHHHHHHHHHHHHhhccCCCcHHHHHhc
Confidence 0110 1889999999999999999999999999854
|
|
| >COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.4e-21 Score=187.85 Aligned_cols=252 Identities=21% Similarity=0.200 Sum_probs=186.0
Q ss_pred cccccceeecccccccccCChhhHHHHHHHHHcCCcc----ccCCHHHHHHHHHHHHHcCCcEEEeccCCccccccHHHH
Q 019244 68 FKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM----VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADI 143 (344)
Q Consensus 68 ~~l~~Pi~iapm~~~~~~~~~~~~~lA~aA~~~g~~~----~~~d~~~~~~~i~~a~~ag~~~l~~tvd~~~~g~r~~~~ 143 (344)
..+..||.+++|+++.++ +++..+||+++.+.|..+ -..+++..+ ..+.++..+-+-.||.+...+
T Consensus 163 ~~i~~~~~~~aMS~GAlS-~eA~~alA~a~~~~G~~sntGEGGe~~~~~~---------~~~s~I~QvaSGRFGV~~~yL 232 (485)
T COG0069 163 LELKKRFVTGAMSFGALS-KEAHEALARAMNRIGTKSNTGEGGEDPERYE---------DGRSAIKQVASGRFGVTPEYL 232 (485)
T ss_pred ceeeecccccccCCcccc-HHHHHHHHHHHHHhcCcccCCCCCCCHHHhc---------cccceEEEeccccCccCHHHh
Confidence 567889999999999988 568999999999999887 344555442 112244555666677666544
Q ss_pred Hhh--cC--CCCccccccccccccccccc-----ccchhhHHHHhhcCCCCC-cHHH----HHHHHHhc-CCcEEEEeec
Q 019244 144 KNR--FT--LPPFLTLKNFQGLDLGKMDE-----ANDSGLAAYVAGQIDRSL-SWKD----VKWLQTIT-KLPILVKGVL 208 (344)
Q Consensus 144 ~~~--~~--~~~g~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~~----i~~i~~~~-~~PvivK~v~ 208 (344)
.+. ++ +.+|..+...+.++...+.. +...+....++|.++.++ +.++ |..|++.. ..+|.||.+.
T Consensus 233 ~~a~~ieIKiaQGAKPGeGG~Lpg~KV~~~IA~~R~~~pG~~~ISP~pHHDiysieDLaqlI~dLk~~~~~~~I~VKlva 312 (485)
T COG0069 233 ANADAIEIKIAQGAKPGEGGQLPGEKVTPEIAKTRGSPPGVGLISPPPHHDIYSIEDLAQLIKDLKEANPWAKISVKLVA 312 (485)
T ss_pred CccceEEEEeccCCCCCCCCCCCCccCCHHHHHhcCCCCCCCCcCCCCcccccCHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 432 22 34454454455555443321 122233456777777665 5553 66777765 3679999984
Q ss_pred --CHHHHHH-HHHcCCcEEEEccC-CCCC-------CCCchhhHHHHHHHHHHc-----cCCCcEEEecCCCCHHHHHHH
Q 019244 209 --TAEDARI-AVQAGAAGIIVSNH-GARQ-------LDYVPATIMALEEVVKAT-----QGRIPVFLDGGVRRGTDVFKA 272 (344)
Q Consensus 209 --~~~~a~~-~~~~G~d~I~v~~~-gG~~-------~~~g~~~~~~l~~i~~~~-----~~~~~via~GGIr~g~dv~ka 272 (344)
..+.+.. ..+++||.|+|+|+ ||+. ..+|.|....|.++.+.+ ++++.|+++||++|+.||+|+
T Consensus 313 ~~~v~~iaagvakA~AD~I~IdG~~GGTGAsP~~~~~~~GiP~e~glae~~q~L~~~glRd~v~l~~~Ggl~Tg~DVaka 392 (485)
T COG0069 313 EHGVGTIAAGVAKAGADVITIDGADGGTGASPLTSIDHAGIPWELGLAETHQTLVLNGLRDKVKLIADGGLRTGADVAKA 392 (485)
T ss_pred ccchHHHHhhhhhccCCEEEEcCCCCcCCCCcHhHhhcCCchHHHHHHHHHHHHHHcCCcceeEEEecCCccCHHHHHHH
Confidence 3455544 88999999999997 5553 246888888888887764 568999999999999999999
Q ss_pred HHcCCCEEEEchHHHHHhhhc-----------------------------ChHHHHHHHHHHHHHHHHHHHHhCCCCHhh
Q 019244 273 LALGASGIFIGRPVVYSLAAE-----------------------------GEKGVRRVLEMLREEFELAMALSGCRSLKE 323 (344)
Q Consensus 273 lalGAd~V~ig~~~l~~~~~~-----------------------------G~~~v~~~l~~l~~el~~~m~~~G~~~i~~ 323 (344)
++||||.|.+|++.|.++.|. .++.|.+++..+.+|++++|..+|.+++++
T Consensus 393 ~aLGAd~v~~gTa~lia~GCim~r~CH~~tCp~GIaTqdp~Lrkrl~~~~~~~~v~N~~~~~a~e~rella~lG~~~l~e 472 (485)
T COG0069 393 AALGADAVGFGTAALVALGCIMCRVCHTGTCPVGIATQDPELRKRLDVEGKPERVINYFTFVAEELRELLAALGKRSLSE 472 (485)
T ss_pred HHhCcchhhhchHHHHHhhhHhhhhccCCCCCceeeecCHHHHhhcCccccHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 999999999999999988752 357899999999999999999999999999
Q ss_pred hcccce
Q 019244 324 ITRDHI 329 (344)
Q Consensus 324 l~~~~l 329 (344)
|.++..
T Consensus 473 l~g~~d 478 (485)
T COG0069 473 LIGRTD 478 (485)
T ss_pred Hhcchh
Confidence 986643
|
|
| >PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.6e-20 Score=189.14 Aligned_cols=145 Identities=23% Similarity=0.360 Sum_probs=121.1
Q ss_pred CCCCCcHHHHHHHHHhc-CCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCC------CCCCchhhHHHHHHHHHHcc-C
Q 019244 182 IDRSLSWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR------QLDYVPATIMALEEVVKATQ-G 253 (344)
Q Consensus 182 ~~~~~~~~~i~~i~~~~-~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~------~~~~g~~~~~~l~~i~~~~~-~ 253 (344)
++..+.|+.|++|++.+ ++||+++.+.|.++++.+.++|+|+|.|+.++|. ..++|.|++.++.++++... .
T Consensus 264 G~s~~~~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~aGad~I~vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~ 343 (495)
T PTZ00314 264 GNSIYQIDMIKKLKSNYPHVDIIAGNVVTADQAKNLIDAGADGLRIGMGSGSICITQEVCAVGRPQASAVYHVARYARER 343 (495)
T ss_pred CCchHHHHHHHHHHhhCCCceEEECCcCCHHHHHHHHHcCCCEEEECCcCCcccccchhccCCCChHHHHHHHHHHHhhc
Confidence 34445678999999998 6999999999999999999999999999754442 24678899999888887654 3
Q ss_pred CCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHH--------------------HHhhh------c--------------
Q 019244 254 RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV--------------------YSLAA------E-------------- 293 (344)
Q Consensus 254 ~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l--------------------~~~~~------~-------------- 293 (344)
++|||++|||+++.|++||+++||++||+|+.|. ++|+. .
T Consensus 344 ~v~vIadGGi~~~~di~kAla~GA~~Vm~G~~~a~~~e~~~~~~~~~g~~~k~yrGm~s~~a~~~~~~~~~y~~~~~~~~ 423 (495)
T PTZ00314 344 GVPCIADGGIKNSGDICKALALGADCVMLGSLLAGTEEAPGEYFFKDGVRLKVYRGMGSLEAMLSKESGERYLDENETIK 423 (495)
T ss_pred CCeEEecCCCCCHHHHHHHHHcCCCEEEECchhccccccCCceeeeCCeEEEEEeccchHHHhhcccccccccccccccc
Confidence 6999999999999999999999999999999883 22211 0
Q ss_pred ---Ch-------HHHHHHHHHHHHHHHHHHHHhCCCCHhhhcc
Q 019244 294 ---GE-------KGVRRVLEMLREEFELAMALSGCRSLKEITR 326 (344)
Q Consensus 294 ---G~-------~~v~~~l~~l~~el~~~m~~~G~~~i~~l~~ 326 (344)
|. ..+.+++..+..+|+..|.++|+.+|.||+.
T Consensus 424 ~~egv~~~v~~~g~~~~~~~~~~~gl~~~~~y~g~~~i~~~~~ 466 (495)
T PTZ00314 424 VAQGVSGSVVDKGSVAKLIPYLVKGVKHGMQYIGAHSIPELHE 466 (495)
T ss_pred cCCceEEeeecCCcHHHHHHHHHHHHHHHHHhhCCCcHHHHHh
Confidence 11 1288999999999999999999999999987
|
|
| >PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.4e-20 Score=187.06 Aligned_cols=141 Identities=27% Similarity=0.404 Sum_probs=118.6
Q ss_pred cHHHHHHHHHhc-CCcEEEEeecCHHHHHHHHHcCCcEEEEccCCC-----CC-CCCchhhHHHHHHHHHHcc-CCCcEE
Q 019244 187 SWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGA-----RQ-LDYVPATIMALEEVVKATQ-GRIPVF 258 (344)
Q Consensus 187 ~~~~i~~i~~~~-~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG-----~~-~~~g~~~~~~l~~i~~~~~-~~~~vi 258 (344)
.++.++++++.+ ++||+++.+.|.++++.+.++|+|+|.++..+| +. ..+|.|+++++.++++..+ .++|||
T Consensus 256 vl~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~aGad~i~vg~g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~vi 335 (486)
T PRK05567 256 VLDRVREIKAKYPDVQIIAGNVATAEAARALIEAGADAVKVGIGPGSICTTRIVAGVGVPQITAIADAAEAAKKYGIPVI 335 (486)
T ss_pred HHHHHHHHHhhCCCCCEEEeccCCHHHHHHHHHcCCCEEEECCCCCccccceeecCCCcCHHHHHHHHHHHhccCCCeEE
Confidence 456799999998 899999999999999999999999999965433 33 3578999999999988663 369999
Q ss_pred EecCCCCHHHHHHHHHcCCCEEEEchHHH--------------------HHhhh------------------------cC
Q 019244 259 LDGGVRRGTDVFKALALGASGIFIGRPVV--------------------YSLAA------------------------EG 294 (344)
Q Consensus 259 a~GGIr~g~dv~kalalGAd~V~ig~~~l--------------------~~~~~------------------------~G 294 (344)
++|||+++.|++|||++||++||+|+.|- ++|++ +|
T Consensus 336 adGGi~~~~di~kAla~GA~~v~~G~~~a~~~e~pg~~~~~~g~~~k~y~gm~s~~a~~~~~~~r~~~~~~~~~~~~~~g 415 (486)
T PRK05567 336 ADGGIRYSGDIAKALAAGASAVMLGSMLAGTEEAPGEVELYQGRSYKSYRGMGSLGAMSKGSSDRYFQSVNAADKLVPEG 415 (486)
T ss_pred EcCCCCCHHHHHHHHHhCCCEEEECccccccccCCCceEEECCEEEEEEeccchHHHHhcccccccccccccccccCCCc
Confidence 99999999999999999999999999872 22221 11
Q ss_pred h-------HHHHHHHHHHHHHHHHHHHHhCCCCHhhhccc
Q 019244 295 E-------KGVRRVLEMLREEFELAMALSGCRSLKEITRD 327 (344)
Q Consensus 295 ~-------~~v~~~l~~l~~el~~~m~~~G~~~i~~l~~~ 327 (344)
. -.+.+++.++...|+..|.++|+.++.||+..
T Consensus 416 ~~~~~~~~g~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~ 455 (486)
T PRK05567 416 IEGRVPYKGPLSEIIHQLMGGLRSGMGYTGAATIEELREK 455 (486)
T ss_pred eEEeCCCCCCHHHHHHHHHHHHHHHHHhcCcCcHHHHHhc
Confidence 1 12889999999999999999999999999844
|
|
| >TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.85 E-value=6e-20 Score=183.67 Aligned_cols=142 Identities=26% Similarity=0.334 Sum_probs=120.1
Q ss_pred cHHHHHHHHHhc-CCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCC------CCCchhhHHHHHHHHHHccC-CCcEE
Q 019244 187 SWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ------LDYVPATIMALEEVVKATQG-RIPVF 258 (344)
Q Consensus 187 ~~~~i~~i~~~~-~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~------~~~g~~~~~~l~~i~~~~~~-~~~vi 258 (344)
..+.+++|++.+ ++||++..+.|.+.++.+.++|+|+|.|+..+|+. ..+|.|+..++.++++.... .+|||
T Consensus 253 ~~~~i~~i~~~~~~~~vi~g~~~t~~~~~~l~~~G~d~i~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~~~~vi 332 (475)
T TIGR01303 253 MISAIKAVRALDLGVPIVAGNVVSAEGVRDLLEAGANIIKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAEARKLGGHVW 332 (475)
T ss_pred HHHHHHHHHHHCCCCeEEEeccCCHHHHHHHHHhCCCEEEECCcCCccccCccccCCCCchHHHHHHHHHHHHHcCCcEE
Confidence 456799999987 79999988999999999999999999999888863 35688999998888765432 69999
Q ss_pred EecCCCCHHHHHHHHHcCCCEEEEchHH---------------------HHHhhh-----------------------cC
Q 019244 259 LDGGVRRGTDVFKALALGASGIFIGRPV---------------------VYSLAA-----------------------EG 294 (344)
Q Consensus 259 a~GGIr~g~dv~kalalGAd~V~ig~~~---------------------l~~~~~-----------------------~G 294 (344)
++|||+++.|++|||++||++||+|+.| +++|++ +|
T Consensus 333 adGgi~~~~di~kala~GA~~vm~g~~~ag~~espg~~~~~~~g~~~k~yrGmgs~~a~~~~~~~~ry~~~~~~~~v~eG 412 (475)
T TIGR01303 333 ADGGVRHPRDVALALAAGASNVMVGSWFAGTYESPGDLMRDRDGRPYKESFGMASKRAVVARTGADNAFDRARKALFEEG 412 (475)
T ss_pred EeCCCCCHHHHHHHHHcCCCEEeechhhcccccCCCceEEeECCEEEEEEecccCHHHHhhccccchhhhhhccccccCc
Confidence 9999999999999999999999999987 112211 23
Q ss_pred hHH-----------HHHHHHHHHHHHHHHHHHhCCCCHhhhcccc
Q 019244 295 EKG-----------VRRVLEMLREEFELAMALSGCRSLKEITRDH 328 (344)
Q Consensus 295 ~~~-----------v~~~l~~l~~el~~~m~~~G~~~i~~l~~~~ 328 (344)
.+| +.+++.++..+|+..|.++|+++|.||+.+-
T Consensus 413 v~~~~~~~~~~~g~~~~~i~~~~~gl~s~~~y~g~~~i~~~~~~~ 457 (475)
T TIGR01303 413 ISTSRMGLDPDRGGVEDLIDHIISGVRSSCTYAGASSLEEFHERA 457 (475)
T ss_pred eecccccccCCCCCHHHHHHHHHHHHHHHhhhcCCCcHHHHHhCC
Confidence 332 7889999999999999999999999998663
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302. |
| >TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.2e-20 Score=182.21 Aligned_cols=142 Identities=29% Similarity=0.411 Sum_probs=118.9
Q ss_pred CCCcHHHHHHHHHhc-CCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCC-----C-CCCchhhHHHHHHHHHHcc-CCC
Q 019244 184 RSLSWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR-----Q-LDYVPATIMALEEVVKATQ-GRI 255 (344)
Q Consensus 184 ~~~~~~~i~~i~~~~-~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~-----~-~~~g~~~~~~l~~i~~~~~-~~~ 255 (344)
....++.|+++++.+ ++||+++.+.|.++++.+.++|+|+|.|+.++|. . ..+|.|+++++.++++... .++
T Consensus 249 ~~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~aGad~i~vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~v 328 (450)
T TIGR01302 249 SIYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALIDAGADGLRVGIGPGSICTTRIVAGVGVPQITAVYDVAEYAAQSGI 328 (450)
T ss_pred HhHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHhCCCEEEECCCCCcCCccceecCCCccHHHHHHHHHHHHhhcCC
Confidence 344567899999996 7999999999999999999999999999865552 1 3478899999999887653 379
Q ss_pred cEEEecCCCCHHHHHHHHHcCCCEEEEchHHH--------------------HHhhh-----------------------
Q 019244 256 PVFLDGGVRRGTDVFKALALGASGIFIGRPVV--------------------YSLAA----------------------- 292 (344)
Q Consensus 256 ~via~GGIr~g~dv~kalalGAd~V~ig~~~l--------------------~~~~~----------------------- 292 (344)
|||++|||+++.|++|||++||++||+|+.|. ++|++
T Consensus 329 pviadGGi~~~~di~kAla~GA~~V~~G~~~a~~~e~pg~~~~~~g~~~k~yrgm~s~~a~~~~~~~ry~~~~~~~~~~~ 408 (450)
T TIGR01302 329 PVIADGGIRYSGDIVKALAAGADAVMLGSLLAGTTESPGEYEIINGRRYKQYRGMGSLGAMTKGSSDRYLQDENKTKKFV 408 (450)
T ss_pred eEEEeCCCCCHHHHHHHHHcCCCEEEECchhhcCCcCCCceEEECCEEEEEEeccchHHHHhcccccccccccccccccc
Confidence 99999999999999999999999999999882 22211
Q ss_pred -cChH-------HHHHHHHHHHHHHHHHHHHhCCCCHhhhc
Q 019244 293 -EGEK-------GVRRVLEMLREEFELAMALSGCRSLKEIT 325 (344)
Q Consensus 293 -~G~~-------~v~~~l~~l~~el~~~m~~~G~~~i~~l~ 325 (344)
+|.+ .+.+++.++...|+..|.++|+.++.||+
T Consensus 409 ~egv~~~~~~~g~~~~~~~~~~~g~~~~~~~~g~~~~~~~~ 449 (450)
T TIGR01302 409 PEGVEGAVPYKGSVLELLPQLVGGLKSGMGYVGARSIDELR 449 (450)
T ss_pred CCceEEcccccCcHHHHHHHHHHHHHHhhhccCcCcHHHHh
Confidence 1111 38899999999999999999999999986
|
This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models. |
| >PLN02274 inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.3e-20 Score=184.04 Aligned_cols=142 Identities=20% Similarity=0.317 Sum_probs=115.0
Q ss_pred CCCcHHHHHHHHHhc-CCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCC----CCCC--chh---hHHHHHHHHHHccC
Q 019244 184 RSLSWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----QLDY--VPA---TIMALEEVVKATQG 253 (344)
Q Consensus 184 ~~~~~~~i~~i~~~~-~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~----~~~~--g~~---~~~~l~~i~~~~~~ 253 (344)
....|+.|++||+.+ +.+|+++.+.|.++++.+.++|+|+|.|++|.|+ +... |.+ ++..++++++..
T Consensus 273 ~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~aGaD~i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~~-- 350 (505)
T PLN02274 273 SIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAAQH-- 350 (505)
T ss_pred cHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHcCcCEEEECCCCCccccCccccccCCCcccHHHHHHHHHHhc--
Confidence 334689999999999 5899999999999999999999999999987663 2211 333 445566665544
Q ss_pred CCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHH--------------------HHhhh---------------------
Q 019244 254 RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV--------------------YSLAA--------------------- 292 (344)
Q Consensus 254 ~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l--------------------~~~~~--------------------- 292 (344)
++|||++|||+++.|++|||++||++|++|+.|. ++|++
T Consensus 351 ~vpVIadGGI~~~~di~kAla~GA~~V~vGs~~~~t~Esp~~~~~~~g~~~k~yrgmgs~~a~~~~~~~ry~~~~~~~~v 430 (505)
T PLN02274 351 GVPVIADGGISNSGHIVKALTLGASTVMMGSFLAGTTEAPGEYFYQDGVRVKKYRGMGSLEAMTKGSDQRYLGDTAKLKI 430 (505)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCEEEEchhhcccccCCcceeeeCCeEEEEEeccchHHHHhccccccccccCccccc
Confidence 7999999999999999999999999999999883 22211
Q ss_pred -cChH-------HHHHHHHHHHHHHHHHHHHhCCCCHhhhccc
Q 019244 293 -EGEK-------GVRRVLEMLREEFELAMALSGCRSLKEITRD 327 (344)
Q Consensus 293 -~G~~-------~v~~~l~~l~~el~~~m~~~G~~~i~~l~~~ 327 (344)
+|.+ .+.+++.+|...|+..|.++|+.+|.||+..
T Consensus 431 ~egv~~~v~~~g~~~~~~~~~~~g~~~~~~y~g~~~~~~~~~~ 473 (505)
T PLN02274 431 AQGVSGAVADKGSVLKFVPYTMQAVKQGFQDLGASSLQSAHEL 473 (505)
T ss_pred CCceEEecccCCCHHHHHHHHHHHHHHhhhhcCcchHHHHHhh
Confidence 1111 2889999999999999999999999999866
|
|
| >PRK07107 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=1e-19 Score=183.06 Aligned_cols=141 Identities=26% Similarity=0.332 Sum_probs=118.9
Q ss_pred cHHHHHHHHHhcC--CcEEEEeecCHHHHHHHHHcCCcEEEEccCCC-----C-CCCCchhhHHHHHHHHHHc-------
Q 019244 187 SWKDVKWLQTITK--LPILVKGVLTAEDARIAVQAGAAGIIVSNHGA-----R-QLDYVPATIMALEEVVKAT------- 251 (344)
Q Consensus 187 ~~~~i~~i~~~~~--~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG-----~-~~~~g~~~~~~l~~i~~~~------- 251 (344)
..+.|+++++.++ ++|+...+.++++++.++++|||+|+|++||| | +.+.|+|+++++.+++++.
T Consensus 270 ~~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~aGAd~I~vg~g~Gs~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~ 349 (502)
T PRK07107 270 QKRTLDWIREKYGDSVKVGAGNVVDREGFRYLAEAGADFVKVGIGGGSICITREQKGIGRGQATALIEVAKARDEYFEET 349 (502)
T ss_pred HHHHHHHHHHhCCCCceEEeccccCHHHHHHHHHcCCCEEEECCCCCcCcccccccCCCccHHHHHHHHHHHHHHHHhhc
Confidence 3578999999986 45555558999999999999999999999999 4 5678899999999998865
Q ss_pred cCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHH--------------------HHHhhh-------------------
Q 019244 252 QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV--------------------VYSLAA------------------- 292 (344)
Q Consensus 252 ~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~--------------------l~~~~~------------------- 292 (344)
+.++|||+|||||++.|++|||++|||+||+|++| +++|++
T Consensus 350 g~~~~viadgGir~~gdi~KAla~GA~~vm~G~~~ag~~espg~~~~~~g~~~k~yrgm~s~~a~~~~ry~~~~~~~~~~ 429 (502)
T PRK07107 350 GVYIPICSDGGIVYDYHMTLALAMGADFIMLGRYFARFDESPTNKVNINGNYMKEYWGEGSNRARNWQRYDLGGDKKLSF 429 (502)
T ss_pred CCcceEEEcCCCCchhHHHHHHHcCCCeeeeChhhhccccCCCcEEEECCEEEEEeecccCHhhhhcccccccccccccc
Confidence 22599999999999999999999999999999998 222221
Q ss_pred -cChH-------HHHHHHHHHHHHHHHHHHHhCCCCHhhhccc
Q 019244 293 -EGEK-------GVRRVLEMLREEFELAMALSGCRSLKEITRD 327 (344)
Q Consensus 293 -~G~~-------~v~~~l~~l~~el~~~m~~~G~~~i~~l~~~ 327 (344)
+|.+ .+.+++.++...|+..|.++|+.++.||+..
T Consensus 430 ~egv~~~v~~~g~~~~~~~~~~~glrs~~~y~g~~~i~~l~~~ 472 (502)
T PRK07107 430 EEGVDSYVPYAGSLKDNVAITLSKVRSTMCNCGALSIPELQQK 472 (502)
T ss_pred CCccEEEecCCCCHHHHHHHHHHHHHHhhhccCCCcHHHHHhC
Confidence 1111 2889999999999999999999999999855
|
|
| >PRK11750 gltB glutamate synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.4e-19 Score=190.28 Aligned_cols=269 Identities=20% Similarity=0.146 Sum_probs=187.2
Q ss_pred cccccceeecccC--CCCCCCcceeecccccccceeecccccccccCChhhHHHHHHHHHcCCcc----ccCCHHHHHHH
Q 019244 42 AFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM----VYKDRNVVAQL 115 (344)
Q Consensus 42 ~f~~i~l~pr~l~--~~~~vd~st~l~g~~l~~Pi~iapm~~~~~~~~~~~~~lA~aA~~~g~~~----~~~d~~~~~~~ 115 (344)
.++++.+.+..+. +.+++..-.+ +-.+|.+++|+++.++ +++..+||+||.+.|+.+ -..+++...
T Consensus 832 ~lr~ll~~~~~~~~~p~~eve~v~~-----I~~rf~~~aMSfGalS-~eA~~aLA~a~~~~G~~sntGEGG~~p~~~~-- 903 (1485)
T PRK11750 832 TLRDLLALKPADNPIPLDEVEPAEE-----LFKRFDSAAMSIGALS-PEAHEALAIAMNRLGGRSNSGEGGEDPARYG-- 903 (1485)
T ss_pred CHHHHhcccCCCCCCCccccccHHH-----HhcccccccCCCCccC-HHHHHHHHHHHHHhCCceecCCCCCCHHHHh--
Confidence 4566666654332 2333322122 3446999999999887 468999999999999988 234555331
Q ss_pred HHHHHHcCCcEEEeccCCccccccHHHHHhh----cCCCCccccccccccccccccc-----ccchhhHHHHhhcCCCCC
Q 019244 116 VRRAERAGFKAIALTVDTPRLGRREADIKNR----FTLPPFLTLKNFQGLDLGKMDE-----ANDSGLAAYVAGQIDRSL 186 (344)
Q Consensus 116 i~~a~~ag~~~l~~tvd~~~~g~r~~~~~~~----~~~~~g~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 186 (344)
.++.+ .+..+-+..+|.+..-+.+. ..+.+|..+...+.++...+.. +...+...+++|.+++++
T Consensus 904 -----~~~~~-~i~QiaSGrFGv~~e~l~~a~~ieIKi~QGAKPG~GG~Lpg~KV~~~IA~~R~~~~G~~liSP~phhdi 977 (1485)
T PRK11750 904 -----TEKVS-KIKQVASGRFGVTPAYLVNAEVLQIKVAQGAKPGEGGQLPGDKVNPLIARLRYSVPGVTLISPPPHHDI 977 (1485)
T ss_pred -----cccCC-eEEEccCCcCCCCHHHhccCCEEEEEecCCCCCCCCCcCccccCCHHHHHHcCCCCCCCCCCCCCCccC
Confidence 11222 35566667777775444432 2234555554445554443321 122334556777777776
Q ss_pred -cHHH----HHHHHHhc-CCcEEEEeecC--H-HHHHHHHHcCCcEEEEccCC-CCC-------CCCchhhHHHHHHHHH
Q 019244 187 -SWKD----VKWLQTIT-KLPILVKGVLT--A-EDARIAVQAGAAGIIVSNHG-ARQ-------LDYVPATIMALEEVVK 249 (344)
Q Consensus 187 -~~~~----i~~i~~~~-~~PvivK~v~~--~-~~a~~~~~~G~d~I~v~~~g-G~~-------~~~g~~~~~~l~~i~~ 249 (344)
+.++ |.++|+.. +.||.||.+.+ . ..+.-+.++|+|+|+|+|+. |+. .+.|.|....|.++.+
T Consensus 978 ySieDL~qlI~~Lk~~~~~~~I~VKl~a~~~vg~ia~gvaka~aD~I~IdG~~GGTGAap~~~~~~~GlP~e~gL~~~~~ 1057 (1485)
T PRK11750 978 YSIEDLAQLIFDLKQVNPKALVSVKLVSEPGVGTIATGVAKAYADLITISGYDGGTGASPLTSVKYAGSPWELGLAETHQ 1057 (1485)
T ss_pred CCHHHHHHHHHHHHHhCCCCcEEEEEccCCCccHHHhChhhcCCCEEEEeCCCCCcccccHHHHhhCCccHHHHHHHHHH
Confidence 5553 67777776 57999999843 2 23345778999999999974 442 2357777777877776
Q ss_pred Hc-----cCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhc----------------------------ChH
Q 019244 250 AT-----QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAE----------------------------GEK 296 (344)
Q Consensus 250 ~~-----~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~----------------------------G~~ 296 (344)
.+ ++++.|+++||++|+.|++||++||||.|.+|+++|.+++|. ..+
T Consensus 1058 ~L~~~glR~rv~l~a~Ggl~t~~Dv~kA~aLGAd~~~~gt~~lialGCi~~r~Ch~~~CPvGiaTqd~~lr~~~~~~~~~ 1137 (1485)
T PRK11750 1058 ALVANGLRHKIRLQVDGGLKTGLDVIKAAILGAESFGFGTGPMVALGCKYLRICHLNNCATGVATQDEKLRKNHYHGLPE 1137 (1485)
T ss_pred HHHhcCCCcceEEEEcCCcCCHHHHHHHHHcCCcccccchHHHHHcCCHHHHhhcCCCCCcEEeccCHHHHhhhccchHH
Confidence 54 568999999999999999999999999999999999998762 135
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHhhh
Q 019244 297 GVRRVLEMLREEFELAMALSGCRSLKEI 324 (344)
Q Consensus 297 ~v~~~l~~l~~el~~~m~~~G~~~i~~l 324 (344)
.|.+++..+.+|++.+|..+|.++++||
T Consensus 1138 ~v~nf~~~~~~el~~~la~lG~~s~~el 1165 (1485)
T PRK11750 1138 MVMNYFEFIAEETREWMAQLGVRSLEDL 1165 (1485)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHh
Confidence 7999999999999999999999999999
|
|
| >PRK07259 dihydroorotate dehydrogenase 1B; Reviewed | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.2e-17 Score=158.80 Aligned_cols=133 Identities=26% Similarity=0.369 Sum_probs=107.3
Q ss_pred CCCcHHHHHHHHHhcCCcEEEEeecCH----HHHHHHHHcCCcEEEEccC-CCCC--C-------------CCc----hh
Q 019244 184 RSLSWKDVKWLQTITKLPILVKGVLTA----EDARIAVQAGAAGIIVSNH-GARQ--L-------------DYV----PA 239 (344)
Q Consensus 184 ~~~~~~~i~~i~~~~~~PvivK~v~~~----~~a~~~~~~G~d~I~v~~~-gG~~--~-------------~~g----~~ 239 (344)
+.+.++.++++++.+++||++|...+. +.++.+.++|+|+|+++|. .|.. . -.+ +.
T Consensus 142 ~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~ 221 (301)
T PRK07259 142 PELAYEVVKAVKEVVKVPVIVKLTPNVTDIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPI 221 (301)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCchhHHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccc
Confidence 345677899999998999999987554 3478899999999998763 1210 0 011 12
Q ss_pred hHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCC
Q 019244 240 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCR 319 (344)
Q Consensus 240 ~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~~ 319 (344)
.+..+.++++.+ ++|||++|||++++|+.++++.|||+|++||++++. + .+++.++++++.+|...|++
T Consensus 222 ~l~~v~~i~~~~--~ipvi~~GGI~~~~da~~~l~aGAd~V~igr~ll~~-----P----~~~~~i~~~l~~~~~~~g~~ 290 (301)
T PRK07259 222 ALRMVYQVYQAV--DIPIIGMGGISSAEDAIEFIMAGASAVQVGTANFYD-----P----YAFPKIIEGLEAYLDKYGIK 290 (301)
T ss_pred cHHHHHHHHHhC--CCCEEEECCCCCHHHHHHHHHcCCCceeEcHHHhcC-----c----HHHHHHHHHHHHHHHHcCCC
Confidence 456777887766 799999999999999999999999999999999863 3 47788999999999999999
Q ss_pred CHhhhccc
Q 019244 320 SLKEITRD 327 (344)
Q Consensus 320 ~i~~l~~~ 327 (344)
+++|+.+.
T Consensus 291 ~i~~~~g~ 298 (301)
T PRK07259 291 SIEEIVGI 298 (301)
T ss_pred CHHHHhCc
Confidence 99999764
|
|
| >cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins | Back alignment and domain information |
|---|
Probab=99.79 E-value=3e-17 Score=157.71 Aligned_cols=130 Identities=21% Similarity=0.282 Sum_probs=105.0
Q ss_pred HHHHHHHHHhcCCcEEEEeecC----HHHHHHHHHcCCcEEEEccCC-CCCCC---------Cc---h----hhHHHHHH
Q 019244 188 WKDVKWLQTITKLPILVKGVLT----AEDARIAVQAGAAGIIVSNHG-ARQLD---------YV---P----ATIMALEE 246 (344)
Q Consensus 188 ~~~i~~i~~~~~~PvivK~v~~----~~~a~~~~~~G~d~I~v~~~g-G~~~~---------~g---~----~~~~~l~~ 246 (344)
.+.++++++.+++||++|+... .+.++.+.++|+|+|+++|+. +...| ++ + -.+..+.+
T Consensus 152 ~eiv~~v~~~~~iPv~vKl~p~~~~~~~~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~ 231 (325)
T cd04739 152 LDILRAVKSAVTIPVAVKLSPFFSALAHMAKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAI 231 (325)
T ss_pred HHHHHHHHhccCCCEEEEcCCCccCHHHHHHHHHHcCCCeEEEEcCcCCCCccccccceecCCCcCCccchhHHHHHHHH
Confidence 4679999999999999998743 456888999999999999864 21111 11 1 12345555
Q ss_pred HHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHhhhcc
Q 019244 247 VVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITR 326 (344)
Q Consensus 247 i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~~~i~~l~~ 326 (344)
+++.+ ++|||++|||+|+.|+.++|.+||++|++||++++ +|.. ++..+.+||..+|...|+++++|+++
T Consensus 232 v~~~~--~ipIig~GGI~s~~Da~e~l~aGA~~Vqv~ta~~~----~gp~----~~~~i~~~L~~~l~~~g~~~i~e~~G 301 (325)
T cd04739 232 LSGRV--KASLAASGGVHDAEDVVKYLLAGADVVMTTSALLR----HGPD----YIGTLLAGLEAWMEEHGYESVQQLRG 301 (325)
T ss_pred HHccc--CCCEEEECCCCCHHHHHHHHHcCCCeeEEehhhhh----cCch----HHHHHHHHHHHHHHHcCCCCHHHHhc
Confidence 55544 79999999999999999999999999999999987 3553 78889999999999999999999987
Q ss_pred c
Q 019244 327 D 327 (344)
Q Consensus 327 ~ 327 (344)
.
T Consensus 302 ~ 302 (325)
T cd04739 302 S 302 (325)
T ss_pred c
Confidence 3
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive. |
| >PRK07565 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.8e-17 Score=159.96 Aligned_cols=132 Identities=20% Similarity=0.219 Sum_probs=105.4
Q ss_pred cHHHHHHHHHhcCCcEEEEeecC----HHHHHHHHHcCCcEEEEccCCC-CCC---------CCchh-------hHHHHH
Q 019244 187 SWKDVKWLQTITKLPILVKGVLT----AEDARIAVQAGAAGIIVSNHGA-RQL---------DYVPA-------TIMALE 245 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v~~----~~~a~~~~~~G~d~I~v~~~gG-~~~---------~~g~~-------~~~~l~ 245 (344)
.++.++++++.+++||++|+... .+.++.+.++|+|+|+++|+.. ... .+|.+ .+..+.
T Consensus 153 ~~eil~~v~~~~~iPV~vKl~p~~~~~~~~a~~l~~~G~dgI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~ 232 (334)
T PRK07565 153 YLDILRAVKSAVSIPVAVKLSPYFSNLANMAKRLDAAGADGLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIA 232 (334)
T ss_pred HHHHHHHHHhccCCcEEEEeCCCchhHHHHHHHHHHcCCCeEEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHH
Confidence 46779999999999999998643 3557889999999999988631 111 22222 234455
Q ss_pred HHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHhhhc
Q 019244 246 EVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEIT 325 (344)
Q Consensus 246 ~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~~~i~~l~ 325 (344)
++++.+ ++|||++|||+|+.|+.|+|.+||++|++||++++ +|. .+++.+.+||+.+|...|+++++|++
T Consensus 233 ~~~~~~--~ipIig~GGI~s~~Da~e~l~aGA~~V~v~t~~~~----~g~----~~~~~i~~~L~~~l~~~g~~~i~e~~ 302 (334)
T PRK07565 233 ILSGRV--GADLAATTGVHDAEDVIKMLLAGADVVMIASALLR----HGP----DYIGTILRGLEDWMERHGYESLQQFR 302 (334)
T ss_pred HHHhhc--CCCEEEECCCCCHHHHHHHHHcCCCceeeehHHhh----hCc----HHHHHHHHHHHHHHHHcCCCCHHHHh
Confidence 555544 79999999999999999999999999999999987 244 47889999999999999999999998
Q ss_pred ccc
Q 019244 326 RDH 328 (344)
Q Consensus 326 ~~~ 328 (344)
+..
T Consensus 303 g~~ 305 (334)
T PRK07565 303 GSM 305 (334)
T ss_pred ccc
Confidence 743
|
|
| >COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.7e-17 Score=156.40 Aligned_cols=135 Identities=25% Similarity=0.403 Sum_probs=110.6
Q ss_pred cHHHHHHHHHhcCCcEEEEeecCH----HHHHHHHHcCCcEEEEccCCC--CCC------------CC---ch----hhH
Q 019244 187 SWKDVKWLQTITKLPILVKGVLTA----EDARIAVQAGAAGIIVSNHGA--RQL------------DY---VP----ATI 241 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v~~~----~~a~~~~~~G~d~I~v~~~gG--~~~------------~~---g~----~~~ 241 (344)
.-+.++++++..++||++|+..+. +.|+.+.++|+|+|++.|+-. ... .+ |+ -.+
T Consensus 149 l~~l~~~vk~~~~~Pv~vKl~P~~~di~~iA~~~~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG~~ikp~al 228 (310)
T COG0167 149 LEKLLEAVKAATKVPVFVKLAPNITDIDEIAKAAEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGLSGPPLKPIAL 228 (310)
T ss_pred HHHHHHHHHhcccCceEEEeCCCHHHHHHHHHHHHHcCCcEEEEEeeccccccccccccccccCcCCCCcCcccchHHHH
Confidence 334588999999999999998654 347889999999999998422 100 11 22 245
Q ss_pred HHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCH
Q 019244 242 MALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSL 321 (344)
Q Consensus 242 ~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~~~i 321 (344)
..+.++++.++.++|||+.|||.|++|+++.+.+||++|++++.+++ +|. .+++.+.++|..+|...|+.|+
T Consensus 229 ~~v~~l~~~~~~~ipIIGvGGI~s~~DA~E~i~aGA~~vQv~Tal~~----~Gp----~i~~~I~~~l~~~l~~~g~~si 300 (310)
T COG0167 229 RVVAELYKRLGGDIPIIGVGGIETGEDALEFILAGASAVQVGTALIY----KGP----GIVKEIIKGLARWLEEKGFESI 300 (310)
T ss_pred HHHHHHHHhcCCCCcEEEecCcCcHHHHHHHHHcCCchheeeeeeee----eCc----hHHHHHHHHHHHHHHHcCCCCH
Confidence 67888888877789999999999999999999999999999999987 366 3788999999999999999999
Q ss_pred hhhcccce
Q 019244 322 KEITRDHI 329 (344)
Q Consensus 322 ~~l~~~~l 329 (344)
+|+.+...
T Consensus 301 ~d~iG~~~ 308 (310)
T COG0167 301 QDIIGSAL 308 (310)
T ss_pred HHHhchhc
Confidence 99987543
|
|
| >TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.1e-17 Score=157.08 Aligned_cols=132 Identities=27% Similarity=0.353 Sum_probs=106.0
Q ss_pred CCcHHHHHHHHHhcCCcEEEEeecCH----HHHHHHHHcCCcEEEEccC-CCCCC------------C---Cchh----h
Q 019244 185 SLSWKDVKWLQTITKLPILVKGVLTA----EDARIAVQAGAAGIIVSNH-GARQL------------D---YVPA----T 240 (344)
Q Consensus 185 ~~~~~~i~~i~~~~~~PvivK~v~~~----~~a~~~~~~G~d~I~v~~~-gG~~~------------~---~g~~----~ 240 (344)
++..+.++++|+.+++||++|...+. +.++.+.++|+|+|+++|+ .|+.. . .|++ .
T Consensus 143 ~~~~eiv~~vr~~~~~pv~vKi~~~~~~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~ 222 (300)
T TIGR01037 143 ELSADVVKAVKDKTDVPVFAKLSPNVTDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIA 222 (300)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCChhhHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchhhhHHH
Confidence 44567899999988999999987543 4477899999999999864 22110 0 1221 2
Q ss_pred HHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCC
Q 019244 241 IMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRS 320 (344)
Q Consensus 241 ~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~~~ 320 (344)
+..+.++++.+ ++|||++|||++++|+.+++.+|||+|++||++++. + .++..++++|..+|...|+++
T Consensus 223 l~~v~~i~~~~--~ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~~----p-----~~~~~i~~~l~~~~~~~g~~~ 291 (300)
T TIGR01037 223 LRMVYDVYKMV--DIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYYR----G-----FAFKKIIEGLIAFLKAEGFTS 291 (300)
T ss_pred HHHHHHHHhcC--CCCEEEECCCCCHHHHHHHHHcCCCceeecHHHhcC----c-----hHHHHHHHHHHHHHHHcCCCC
Confidence 45677777666 699999999999999999999999999999999862 2 478899999999999999999
Q ss_pred Hhhhccc
Q 019244 321 LKEITRD 327 (344)
Q Consensus 321 i~~l~~~ 327 (344)
++|+.+.
T Consensus 292 ~~e~~g~ 298 (300)
T TIGR01037 292 IEELIGI 298 (300)
T ss_pred HHHHhCc
Confidence 9999753
|
This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase. |
| >PLN02826 dihydroorotate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.5e-16 Score=156.40 Aligned_cols=123 Identities=30% Similarity=0.471 Sum_probs=100.5
Q ss_pred cCCcEEEEee--cCHHH----HHHHHHcCCcEEEEccCC-CC----------CCCC---ch----hhHHHHHHHHHHccC
Q 019244 198 TKLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHG-AR----------QLDY---VP----ATIMALEEVVKATQG 253 (344)
Q Consensus 198 ~~~PvivK~v--~~~~~----a~~~~~~G~d~I~v~~~g-G~----------~~~~---g~----~~~~~l~~i~~~~~~ 253 (344)
.++||++|+. .+.++ ++.+.++|+|+|+++|+- ++ +..+ |+ .++..+.++++.+++
T Consensus 261 ~~~Pv~vKlaPdl~~~di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~~~~ 340 (409)
T PLN02826 261 GPPPLLVKIAPDLSKEDLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRLTRG 340 (409)
T ss_pred cCCceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCCCcCCccccHHHHHHHHHHHHHhCC
Confidence 4689999995 45444 788999999999999841 11 1112 22 256778888888877
Q ss_pred CCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHhhhcccc
Q 019244 254 RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDH 328 (344)
Q Consensus 254 ~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~~~i~~l~~~~ 328 (344)
++|||++|||.|+.|+++.|.+||++|+++|.++| +|+ .+++.+.+||..+|...|+++++|+.+..
T Consensus 341 ~ipIIgvGGI~sg~Da~e~i~AGAs~VQv~Ta~~~----~Gp----~~i~~I~~eL~~~l~~~G~~si~e~iG~~ 407 (409)
T PLN02826 341 KIPLVGCGGVSSGEDAYKKIRAGASLVQLYTAFAY----EGP----ALIPRIKAELAACLERDGFKSIQEAVGAD 407 (409)
T ss_pred CCcEEEECCCCCHHHHHHHHHhCCCeeeecHHHHh----cCH----HHHHHHHHHHHHHHHHcCCCCHHHHhCcC
Confidence 89999999999999999999999999999999987 355 37788999999999999999999997643
|
|
| >PLN02495 oxidoreductase, acting on the CH-CH group of donors | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.4e-16 Score=155.14 Aligned_cols=135 Identities=19% Similarity=0.257 Sum_probs=104.1
Q ss_pred cHHHHHHHHHhcCCcEEEEeecCH----HHHHHHHHcCCcEEEEccCCC--CCC----------------CC---chh--
Q 019244 187 SWKDVKWLQTITKLPILVKGVLTA----EDARIAVQAGAAGIIVSNHGA--RQL----------------DY---VPA-- 239 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v~~~----~~a~~~~~~G~d~I~v~~~gG--~~~----------------~~---g~~-- 239 (344)
..+.++++++.+++||++|+..+. +.++.+.++|+|+|++.|+-. ... .+ |++
T Consensus 170 ~~~i~~~Vk~~~~iPv~vKLsPn~t~i~~ia~aa~~~Gadgi~liNT~~~~~~ID~~t~~p~~~~~~~~~~GGlSG~alk 249 (385)
T PLN02495 170 LEEVCGWINAKATVPVWAKMTPNITDITQPARVALKSGCEGVAAINTIMSVMGINLDTLRPEPCVEGYSTPGGYSSKAVR 249 (385)
T ss_pred HHHHHHHHHHhhcCceEEEeCCChhhHHHHHHHHHHhCCCEEEEecccCcccccccccCccccccCCCCCCCCccchhhh
Confidence 334578888888999999998543 447789999999999998522 111 01 111
Q ss_pred --hHHHHHHHHHHcc----CCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcChHHHHHHHHHHHHHHHHHH
Q 019244 240 --TIMALEEVVKATQ----GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAM 313 (344)
Q Consensus 240 --~~~~l~~i~~~~~----~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~el~~~m 313 (344)
.+..+.++++.+. .++|||+.|||.|+.|+++.|.+||++|++++.+++ +|.. +++.+.+||+.+|
T Consensus 250 piAl~~v~~i~~~~~~~~~~~ipIiGvGGI~s~~Da~e~i~aGAs~VQv~Ta~~~----~Gp~----vi~~i~~~L~~~m 321 (385)
T PLN02495 250 PIALAKVMAIAKMMKSEFPEDRSLSGIGGVETGGDAAEFILLGADTVQVCTGVMM----HGYP----LVKNLCAELQDFM 321 (385)
T ss_pred HHHHHHHHHHHHHHhhhccCCCcEEEECCCCCHHHHHHHHHhCCCceeEeeeeee----cCcH----HHHHHHHHHHHHH
Confidence 2233445555542 259999999999999999999999999999999886 3663 7888999999999
Q ss_pred HHhCCCCHhhhcccce
Q 019244 314 ALSGCRSLKEITRDHI 329 (344)
Q Consensus 314 ~~~G~~~i~~l~~~~l 329 (344)
...|+++++|+++..+
T Consensus 322 ~~~G~~si~e~~G~~~ 337 (385)
T PLN02495 322 KKHNFSSIEDFRGASL 337 (385)
T ss_pred HHcCCCCHHHHhCcCC
Confidence 9999999999987543
|
|
| >PRK07807 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.1e-16 Score=160.41 Aligned_cols=142 Identities=28% Similarity=0.350 Sum_probs=118.0
Q ss_pred CcHHHHHHHHHhc-CCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCC------CCCchhhHHHHHHHHHHccC-CCcE
Q 019244 186 LSWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ------LDYVPATIMALEEVVKATQG-RIPV 257 (344)
Q Consensus 186 ~~~~~i~~i~~~~-~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~------~~~g~~~~~~l~~i~~~~~~-~~~v 257 (344)
..++.|++|++.+ +++|+...+.|.+.++.+.++|+|+|.|.-..|+- ...|.|+++++.+++++... .+||
T Consensus 254 ~~~~~i~~ik~~~p~~~v~agnv~t~~~a~~l~~aGad~v~vgig~gsictt~~~~~~~~p~~~av~~~~~~~~~~~~~v 333 (479)
T PRK07807 254 KMLEALRAVRALDPGVPIVAGNVVTAEGTRDLVEAGADIVKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAAARELGAHV 333 (479)
T ss_pred HHHHHHHHHHHHCCCCeEEeeccCCHHHHHHHHHcCCCEEEECccCCcccccccccCCchhHHHHHHHHHHHHHhcCCcE
Confidence 3567899999998 69999999999999999999999999987655531 23467999999999886543 7999
Q ss_pred EEecCCCCHHHHHHHHHcCCCEEEEchHHHH---------------------Hhhh-----------------------c
Q 019244 258 FLDGGVRRGTDVFKALALGASGIFIGRPVVY---------------------SLAA-----------------------E 293 (344)
Q Consensus 258 ia~GGIr~g~dv~kalalGAd~V~ig~~~l~---------------------~~~~-----------------------~ 293 (344)
|++|||+++.|++|+|++||++||+|+.|.- +|++ +
T Consensus 334 ia~ggi~~~~~~~~al~~ga~~v~~g~~~ag~~Espg~~~~~~~g~~~k~yrgmgs~~a~~~~~~~~~~~~~~~~~~~~e 413 (479)
T PRK07807 334 WADGGVRHPRDVALALAAGASNVMIGSWFAGTYESPGDLMRDRDGRPYKESFGMASARAVAARTAGDSAFDRARKALFEE 413 (479)
T ss_pred EecCCCCCHHHHHHHHHcCCCeeeccHhhccCccCCCceEeccCCeEEEEeeccccHHHHhcccCccchhhhcccCCCCC
Confidence 9999999999999999999999999998721 1110 1
Q ss_pred ChHH-----------HHHHHHHHHHHHHHHHHHhCCCCHhhhccc
Q 019244 294 GEKG-----------VRRVLEMLREEFELAMALSGCRSLKEITRD 327 (344)
Q Consensus 294 G~~~-----------v~~~l~~l~~el~~~m~~~G~~~i~~l~~~ 327 (344)
|.++ +..++..|...|+..|.++|+++|.||+.+
T Consensus 414 Gv~~~~~~~~~~~g~~~~~~~~l~~glr~~~~y~g~~~i~~~~~~ 458 (479)
T PRK07807 414 GISTSRMYLDPGRPGVEDLLDHITSGVRSSCTYAGARTLAEFHER 458 (479)
T ss_pred CccceeeeccCCCCCHHHHHHHHHHHHHHHHhhcCcCcHHHHHhC
Confidence 2112 778899999999999999999999999866
|
|
| >KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.1e-17 Score=158.99 Aligned_cols=147 Identities=26% Similarity=0.350 Sum_probs=119.5
Q ss_pred cCCCCCcHHHHHHHHHhc-CCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCC----C--CCCchhhHHHHHHHHHHcc-
Q 019244 181 QIDRSLSWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----Q--LDYVPATIMALEEVVKATQ- 252 (344)
Q Consensus 181 ~~~~~~~~~~i~~i~~~~-~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~----~--~~~g~~~~~~l~~i~~~~~- 252 (344)
+++..+..+.|+|+++.+ .++||...+.|.+.++.++++|||++.|....|. | +..|.|+..++.++.+...
T Consensus 273 qGnS~~qiemik~iK~~yP~l~ViaGNVVT~~qa~nLI~aGaDgLrVGMGsGSiCiTqevma~GrpQ~TAVy~va~~A~q 352 (503)
T KOG2550|consen 273 QGNSIYQLEMIKYIKETYPDLQIIAGNVVTKEQAANLIAAGADGLRVGMGSGSICITQKVMACGRPQGTAVYKVAEFANQ 352 (503)
T ss_pred CCcchhHHHHHHHHHhhCCCceeeccceeeHHHHHHHHHccCceeEeccccCceeeeceeeeccCCcccchhhHHHHHHh
Confidence 455566788999999999 5889988899999999999999999999865553 2 3457787778777776543
Q ss_pred CCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHH--------------------HHHhhh--------------------
Q 019244 253 GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV--------------------VYSLAA-------------------- 292 (344)
Q Consensus 253 ~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~--------------------l~~~~~-------------------- 292 (344)
-.+|+|+||||++..+++|||.|||++||+|.-+ +++++.
T Consensus 353 ~gvpviADGGiq~~Ghi~KAl~lGAstVMmG~lLAgtTEapGeyf~~~g~rlKkyrGMGSl~AM~~~s~~rY~~e~dkvk 432 (503)
T KOG2550|consen 353 FGVPCIADGGIQNVGHVVKALGLGASTVMMGGLLAGTTEAPGEYFFRDGVRLKKYRGMGSLDAMESSSQKRYFSEVDKVK 432 (503)
T ss_pred cCCceeecCCcCccchhHhhhhcCchhheecceeeeeeccCcceeeecCeeehhccCcchHHHHhhhhhhccccccceEe
Confidence 3799999999999999999999999999999854 222211
Q ss_pred --cCh-------HHHHHHHHHHHHHHHHHHHHhCCCCHhhhccc
Q 019244 293 --EGE-------KGVRRVLEMLREEFELAMALSGCRSLKEITRD 327 (344)
Q Consensus 293 --~G~-------~~v~~~l~~l~~el~~~m~~~G~~~i~~l~~~ 327 (344)
+|. -.+.+++..+...++..++..|++++++|+..
T Consensus 433 iAQGVsg~v~dKGsv~kfipyl~~giqh~cqdiGa~sL~~l~~~ 476 (503)
T KOG2550|consen 433 IAQGVSGSVQDKGSVQKFIPYLLAGIQHSCQDIGARSLKELREM 476 (503)
T ss_pred eccCcEEEeccCcchhhhHHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence 111 13889999999999999999999999999754
|
|
| >cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.8e-16 Score=148.20 Aligned_cols=204 Identities=23% Similarity=0.285 Sum_probs=144.2
Q ss_pred eecccccccccCChhhHHHHHHHHHcCCcc----ccCCHHHHHHHHHHHHHcCCcEEEeccCCccccccHHHHHhhcCCC
Q 019244 75 MIAPTAMQKMAHPEGEYATARAASAAGTIM----VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLP 150 (344)
Q Consensus 75 ~iapm~~~~~~~~~~~~~lA~aA~~~g~~~----~~~d~~~~~~~i~~a~~ag~~~l~~tvd~~~~g~r~~~~~~~~~~~ 150 (344)
+++.|+........--..+.+...+.+.+. ...+.+...+..++++++|++.+.++..+|....+..
T Consensus 63 ~~n~~g~~~~g~~~~~~~~~~~~~~~~~p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~--------- 133 (296)
T cd04740 63 MLNAIGLQNPGVEAFLEELLPWLREFGTPVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVKGGGM--------- 133 (296)
T ss_pred eeeecCCCCcCHHHHHHHHHHHhhcCCCcEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcc---------
Confidence 345566544221111123333333356666 3456777778888999999999999988886411100
Q ss_pred CcccccccccccccccccccchhhHHHHhhcCCCCCcHHHHHHHHHhcCCcEEEEeecCH----HHHHHHHHcCCcEEEE
Q 019244 151 PFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTA----EDARIAVQAGAAGIIV 226 (344)
Q Consensus 151 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~PvivK~v~~~----~~a~~~~~~G~d~I~v 226 (344)
.+ ..++.+..+.++++++.+++||++|...+. +.++.+.++|+|+|++
T Consensus 134 ---------~~-------------------~~~~~~~~eiv~~vr~~~~~Pv~vKl~~~~~~~~~~a~~~~~~G~d~i~~ 185 (296)
T cd04740 134 ---------AF-------------------GTDPEAVAEIVKAVKKATDVPVIVKLTPNVTDIVEIARAAEEAGADGLTL 185 (296)
T ss_pred ---------cc-------------------cCCHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHHHHcCCCEEEE
Confidence 00 011233456799999988999999986432 4577899999999999
Q ss_pred ccC-CCCCCC---------------Cch----hhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHH
Q 019244 227 SNH-GARQLD---------------YVP----ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 286 (344)
Q Consensus 227 ~~~-gG~~~~---------------~g~----~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~ 286 (344)
+|+ .|+..+ .|+ ..+..+.++++.+ ++|||++|||.++.|+.++|++|||+|++||++
T Consensus 186 ~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~--~ipii~~GGI~~~~da~~~l~~GAd~V~igra~ 263 (296)
T cd04740 186 INTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAV--EIPIIGVGGIASGEDALEFLMAGASAVQVGTAN 263 (296)
T ss_pred ECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhc--CCCEEEECCCCCHHHHHHHHHcCCCEEEEchhh
Confidence 874 221100 111 1346677777766 799999999999999999999999999999999
Q ss_pred HHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHhhhcc
Q 019244 287 VYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITR 326 (344)
Q Consensus 287 l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~~~i~~l~~ 326 (344)
++. + .++..+.++|..+|...|+++++|+++
T Consensus 264 l~~-----p----~~~~~i~~~l~~~~~~~g~~~~~~~~g 294 (296)
T cd04740 264 FVD-----P----EAFKEIIEGLEAYLDEEGIKSIEELVG 294 (296)
T ss_pred hcC-----h----HHHHHHHHHHHHHHHHcCCCCHHHHhC
Confidence 863 3 477899999999999999999999975
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >PRK02506 dihydroorotate dehydrogenase 1A; Reviewed | Back alignment and domain information |
|---|
Probab=99.69 E-value=2e-15 Score=144.17 Aligned_cols=132 Identities=22% Similarity=0.201 Sum_probs=99.8
Q ss_pred cHHHHHHHHHhcCCcEEEEeecC--H-HHHHHH---HHcCCcEEEEccCC--CC--------C-C--C---C---ch---
Q 019244 187 SWKDVKWLQTITKLPILVKGVLT--A-EDARIA---VQAGAAGIIVSNHG--AR--------Q-L--D---Y---VP--- 238 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v~~--~-~~a~~~---~~~G~d~I~v~~~g--G~--------~-~--~---~---g~--- 238 (344)
..+.++++++.+++||++|.... . +.++.+ .+.|+++|...|.- |. . . . + |+
T Consensus 145 ~~~i~~~v~~~~~~Pv~vKlsp~~~~~~~a~~~~~~~~~g~~~i~~~nt~~~~~~iD~~~~~~~~~~~~~~GGlSG~~i~ 224 (310)
T PRK02506 145 TEQILEEVFTYFTKPLGVKLPPYFDIVHFDQAAAIFNKFPLAFVNCINSIGNGLVIDPEDETVVIKPKNGFGGIGGDYIK 224 (310)
T ss_pred HHHHHHHHHHhcCCccEEecCCCCCHHHHHHHHHHhCcCceEEEEEeccCCCceEEecCCCCccccCCCCCCcCCchhcc
Confidence 34568999998899999999743 2 233333 35577777666531 11 0 0 0 1 22
Q ss_pred -hhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhC
Q 019244 239 -ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSG 317 (344)
Q Consensus 239 -~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G 317 (344)
-.+..+.++++.++.++|||++|||.|++|+++.+.+||++||+++++++ +|. .++..+.+||+.+|...|
T Consensus 225 p~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqv~ta~~~----~gp----~~~~~i~~~L~~~l~~~g 296 (310)
T PRK02506 225 PTALANVRAFYQRLNPSIQIIGTGGVKTGRDAFEHILCGASMVQVGTALHK----EGP----AVFERLTKELKAIMAEKG 296 (310)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCCCHHhhhHHHHH----hCh----HHHHHHHHHHHHHHHHhC
Confidence 24456677777766679999999999999999999999999999999987 244 378889999999999999
Q ss_pred CCCHhhhcc
Q 019244 318 CRSLKEITR 326 (344)
Q Consensus 318 ~~~i~~l~~ 326 (344)
+++++|+++
T Consensus 297 ~~si~e~~G 305 (310)
T PRK02506 297 YQSLEDFRG 305 (310)
T ss_pred CCCHHHHhC
Confidence 999999986
|
|
| >cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.69 E-value=9e-16 Score=145.92 Aligned_cols=102 Identities=25% Similarity=0.313 Sum_probs=82.3
Q ss_pred cHHHHHHHHHhcCCcEEEEeecCH----HHHHHHHHcCCcEEEEccCC-CC--------------------CCCCch---
Q 019244 187 SWKDVKWLQTITKLPILVKGVLTA----EDARIAVQAGAAGIIVSNHG-AR--------------------QLDYVP--- 238 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v~~~----~~a~~~~~~G~d~I~v~~~g-G~--------------------~~~~g~--- 238 (344)
..+.++++++.+++||+||+.... +.++.+.++|+|+|+++|+- ++ +.-.|+
T Consensus 156 ~~~iv~~v~~~~~~Pv~vKl~~~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~ 235 (299)
T cd02940 156 VEEICRWVREAVKIPVIAKLTPNITDIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVK 235 (299)
T ss_pred HHHHHHHHHHhcCCCeEEECCCCchhHHHHHHHHHHcCCCEEEEecccccccccccccCCccccccCCCCcCcccCCCcc
Confidence 445788999888999999987433 66888999999999988742 11 011222
Q ss_pred -hhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 239 -ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 239 -~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
.+++.+.++++.+.+++|||++|||++++|+.+++.+||++||+||.+++
T Consensus 236 p~~l~~v~~~~~~~~~~ipIig~GGI~~~~da~~~l~aGA~~V~i~ta~~~ 286 (299)
T cd02940 236 PIALRAVSQIARAPEPGLPISGIGGIESWEDAAEFLLLGASVVQVCTAVMN 286 (299)
T ss_pred hHHHHHHHHHHHhcCCCCcEEEECCCCCHHHHHHHHHcCCChheEceeecc
Confidence 24788888888875579999999999999999999999999999999886
|
DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue. |
| >PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.1e-15 Score=149.90 Aligned_cols=135 Identities=21% Similarity=0.309 Sum_probs=106.7
Q ss_pred cHHHHHHHHHhcCCcEEEEeecC----HHHHHHHHHcCCcEEEEccC-CC-----------------CC---CCCchh--
Q 019244 187 SWKDVKWLQTITKLPILVKGVLT----AEDARIAVQAGAAGIIVSNH-GA-----------------RQ---LDYVPA-- 239 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v~~----~~~a~~~~~~G~d~I~v~~~-gG-----------------~~---~~~g~~-- 239 (344)
..+.++++++.+++||+||+... .+.++.+.++|+|+|++.|+ .+ +. .-.|++
T Consensus 156 ~~~i~~~v~~~~~~Pv~vKl~p~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~ 235 (420)
T PRK08318 156 VEMYTRWVKRGSRLPVIVKLTPNITDIREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVK 235 (420)
T ss_pred HHHHHHHHHhccCCcEEEEcCCCcccHHHHHHHHHHCCCCEEEEecccCccccccccccCCCceecCCCCcccccchhhh
Confidence 44578889988899999999743 25578899999999997663 12 10 112333
Q ss_pred --hHHHHHHHHHHcc-CCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHh
Q 019244 240 --TIMALEEVVKATQ-GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALS 316 (344)
Q Consensus 240 --~~~~l~~i~~~~~-~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~ 316 (344)
.++.+.++++.++ .++|||++|||.|+.|++++|.+||++||++|.+++ +|. .++..+.+||+.+|...
T Consensus 236 p~~l~~v~~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqi~ta~~~----~gp----~ii~~I~~~L~~~l~~~ 307 (420)
T PRK08318 236 PIALNMVAEIARDPETRGLPISGIGGIETWRDAAEFILLGAGTVQVCTAAMQ----YGF----RIVEDMISGLSHYMDEK 307 (420)
T ss_pred HHHHHHHHHHHhccccCCCCEEeecCcCCHHHHHHHHHhCCChheeeeeecc----CCc----hhHHHHHHHHHHHHHHc
Confidence 4677777777653 279999999999999999999999999999999986 354 36788999999999999
Q ss_pred CCCCHhhhcccce
Q 019244 317 GCRSLKEITRDHI 329 (344)
Q Consensus 317 G~~~i~~l~~~~l 329 (344)
|..++.++....+
T Consensus 308 g~~si~e~iG~~~ 320 (420)
T PRK08318 308 GFASLEDMVGLAV 320 (420)
T ss_pred CcchHHHHhcccc
Confidence 9999999986433
|
|
| >PRK05286 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.8e-15 Score=142.03 Aligned_cols=122 Identities=20% Similarity=0.300 Sum_probs=95.5
Q ss_pred HHHHHHHHHhcC-----CcEEEEeec--C----HHHHHHHHHcCCcEEEEccCCC-------------CCCCCchh----
Q 019244 188 WKDVKWLQTITK-----LPILVKGVL--T----AEDARIAVQAGAAGIIVSNHGA-------------RQLDYVPA---- 239 (344)
Q Consensus 188 ~~~i~~i~~~~~-----~PvivK~v~--~----~~~a~~~~~~G~d~I~v~~~gG-------------~~~~~g~~---- 239 (344)
.+.++++++.++ +||++|... + .+.++.+.++|+|+|+++|.-- ++.-.|++
T Consensus 195 ~eiv~aVr~~~~~~~~~~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~ 274 (344)
T PRK05286 195 DELLAALKEAQAELHGYVPLLVKIAPDLSDEELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFER 274 (344)
T ss_pred HHHHHHHHHHHhccccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCcccHHHHHH
Confidence 356889998886 999999973 2 2447888999999999988410 00011232
Q ss_pred hHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhC
Q 019244 240 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSG 317 (344)
Q Consensus 240 ~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G 317 (344)
.++.+.++++.+++++|||++|||+|++|+.+++.+|||+|++||++++. |+ .+++.+++||+.+|...|
T Consensus 275 ~l~~v~~l~~~~~~~ipIig~GGI~s~eda~e~l~aGAd~V~v~~~~~~~----gP----~~~~~i~~~L~~~l~~~g 344 (344)
T PRK05286 275 STEVIRRLYKELGGRLPIIGVGGIDSAEDAYEKIRAGASLVQIYSGLIYE----GP----GLVKEIVRGLARLLRRDG 344 (344)
T ss_pred HHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCHHHHHHHHHHh----Cc----hHHHHHHHHHHHHHHhcC
Confidence 45677778777766799999999999999999999999999999999862 44 367889999999998765
|
|
| >cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.8e-13 Score=129.89 Aligned_cols=119 Identities=19% Similarity=0.173 Sum_probs=87.3
Q ss_pred cHHHHHHHHHhcCCcEEEEeec--CH----HHHHHHHHc--CCcEEEEccCCC---------CC--C-----CCchh---
Q 019244 187 SWKDVKWLQTITKLPILVKGVL--TA----EDARIAVQA--GAAGIIVSNHGA---------RQ--L-----DYVPA--- 239 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v~--~~----~~a~~~~~~--G~d~I~v~~~gG---------~~--~-----~~g~~--- 239 (344)
..+.++++++.+++||++|+.. +. +.++.+.++ |+|+|++.|+-+ +. + .+|.+
T Consensus 145 ~~~i~~~v~~~~~iPv~vKl~p~~~~~~~~~~a~~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG~SG~~ 224 (294)
T cd04741 145 TLEYLTAVKAAYSIPVGVKTPPYTDPAQFDTLAEALNAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGLAGAY 224 (294)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHhccccCCcEEEEEccCCccccccCCCCCcccCCCCCCCCcCchh
Confidence 4456889999889999999973 22 234556677 999999865421 11 1 12222
Q ss_pred ----hHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcChHHHHHHHHHHHHHHHHHH
Q 019244 240 ----TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAM 313 (344)
Q Consensus 240 ----~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~el~~~m 313 (344)
.+..+.++++.++.++|||++|||.|++|+++++.+|||+||++|.+++ .|+ .+++.+.+||+.+|
T Consensus 225 i~~~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~l~aGA~~Vqv~ta~~~----~gp----~~~~~i~~~L~~~~ 294 (294)
T cd04741 225 LHPLALGNVRTFRRLLPSEIQIIGVGGVLDGRGAFRMRLAGASAVQVGTALGK----EGP----KVFARIEKELEDIW 294 (294)
T ss_pred hHHHHHHHHHHHHHhcCCCCCEEEeCCCCCHHHHHHHHHcCCCceeEchhhhh----cCc----hHHHHHHHHHHhhC
Confidence 3345567767765469999999999999999999999999999999986 244 36777888888764
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2 | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.2e-13 Score=133.05 Aligned_cols=113 Identities=27% Similarity=0.406 Sum_probs=84.3
Q ss_pred HHHHHHHHHhcC-----CcEEEEeec--C----HHHHHHHHHcCCcEEEEccCCC-C------------CCCCch----h
Q 019244 188 WKDVKWLQTITK-----LPILVKGVL--T----AEDARIAVQAGAAGIIVSNHGA-R------------QLDYVP----A 239 (344)
Q Consensus 188 ~~~i~~i~~~~~-----~PvivK~v~--~----~~~a~~~~~~G~d~I~v~~~gG-~------------~~~~g~----~ 239 (344)
.+.++++++.++ +||++|... + .+.++.+.++|+|+|+++|.-. . +.-.|+ .
T Consensus 186 ~~iv~av~~~~~~~~~~~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~ 265 (327)
T cd04738 186 RELLTAVKEERNKLGKKVPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKER 265 (327)
T ss_pred HHHHHHHHHHHhhcccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCChhhhHH
Confidence 356888888875 999999973 3 2346788999999999987311 0 000122 2
Q ss_pred hHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcChHHHHHHHHHHHHH
Q 019244 240 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREE 308 (344)
Q Consensus 240 ~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~e 308 (344)
+++.+.++++.+++++|||++|||+|++|+.+++.+|||+|++||++++ +|+. ++..+.+|
T Consensus 266 ~l~~v~~l~~~~~~~ipIi~~GGI~t~~da~e~l~aGAd~V~vg~~~~~----~gP~----~~~~i~~~ 326 (327)
T cd04738 266 STEVLRELYKLTGGKIPIIGVGGISSGEDAYEKIRAGASLVQLYTGLVY----EGPG----LVKRIKRE 326 (327)
T ss_pred HHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHcCCCHHhccHHHHh----hCcH----HHHHHHhc
Confidence 4677788888776679999999999999999999999999999999986 2553 44555554
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors. |
| >PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway | Back alignment and domain information |
|---|
Probab=99.55 E-value=8.6e-14 Score=132.08 Aligned_cols=117 Identities=25% Similarity=0.341 Sum_probs=84.3
Q ss_pred HHHHHHHHhcCCcEEEEeec---CH---HHHHHHHHcCCcEEEEccCCCC----------CCC-------Cch----hhH
Q 019244 189 KDVKWLQTITKLPILVKGVL---TA---EDARIAVQAGAAGIIVSNHGAR----------QLD-------YVP----ATI 241 (344)
Q Consensus 189 ~~i~~i~~~~~~PvivK~v~---~~---~~a~~~~~~G~d~I~v~~~gG~----------~~~-------~g~----~~~ 241 (344)
+.++++++..++||++|+.. .. +.+..+.+.|+++|++.|.-+. ... .|+ -++
T Consensus 152 ~i~~~v~~~~~~Pv~vKL~p~~~~~~~~~~~~~~~~~g~~gi~~~Nt~~~~~~id~~~~~~~~~~~~gGlSG~~i~p~aL 231 (295)
T PF01180_consen 152 EIVRAVREAVDIPVFVKLSPNFTDIEPFAIAAELAADGADGIVAINTFGQGDAIDLETRRPVLGNGFGGLSGPAIRPIAL 231 (295)
T ss_dssp HHHHHHHHHHSSEEEEEE-STSSCHHHHHHHHHHHTHTECEEEE---EEEEE-EETTTTEESSSGGEEEEEEGGGHHHHH
T ss_pred HHHHHHHhccCCCEEEEecCCCCchHHHHHHHHhhccceeEEEEecCccCcccccchhcceeeccccCCcCchhhhhHHH
Confidence 35777888889999999974 22 2355566889999998774110 010 122 245
Q ss_pred HHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcChHHHHHHHHHHHHHHHHHH
Q 019244 242 MALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAM 313 (344)
Q Consensus 242 ~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~el~~~m 313 (344)
..+.++++.++.++|||++|||.|++|++++|.+||++|++++.+++. |.. +++.+.+||+.+|
T Consensus 232 ~~V~~~~~~~~~~i~Iig~GGI~s~~da~e~l~aGA~~Vqv~Sal~~~----Gp~----~~~~i~~~L~~~l 295 (295)
T PF01180_consen 232 RWVRELRKALGQDIPIIGVGGIHSGEDAIEFLMAGASAVQVCSALIYR----GPG----VIRRINRELEEWL 295 (295)
T ss_dssp HHHHHHHHHTTTSSEEEEESS--SHHHHHHHHHHTESEEEESHHHHHH----GTT----HHHHHHHHHHHHH
T ss_pred HHHHHHHhccccceEEEEeCCcCCHHHHHHHHHhCCCHheechhhhhc----CcH----HHHHHHHHHHhhC
Confidence 667778887766799999999999999999999999999999999773 553 6778888888876
|
DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A .... |
| >PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1 | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.7e-13 Score=132.14 Aligned_cols=205 Identities=22% Similarity=0.299 Sum_probs=114.7
Q ss_pred eecccccccceeecccccccccCChhhHHHHHHHHHcCCcc----ccCCHHHHHHHHHHHHHcCCcEEEeccCCcccccc
Q 019244 64 TVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM----VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRR 139 (344)
Q Consensus 64 ~l~g~~l~~Pi~iapm~~~~~~~~~~~~~lA~aA~~~g~~~----~~~d~~~~~~~i~~a~~ag~~~l~~tvd~~~~g~r 139 (344)
++||. .+||+.+||++ .+.+ .||.+.+++|... .+.+++..++.+++.++.--+...+++-.+.....
T Consensus 6 ~~lgi--~~PIiqapM~~--is~~----~LaaAVs~aGglG~l~~~~~~~~~l~~~i~~~~~~t~~pfgvnl~~~~~~~~ 77 (330)
T PF03060_consen 6 ELLGI--KYPIIQAPMGG--ISTP----ELAAAVSNAGGLGFLGAGGLTPEQLREEIRKIRALTDKPFGVNLFLPPPDPA 77 (330)
T ss_dssp HHHT---SSSEEE---TT--TSSH----HHHHHHHHTTSBEEEECTTSSHHHHHHHHHHHHHH-SS-EEEEEETTSTTHH
T ss_pred HHhCC--CcCEEcCCCCC--CChH----HHHHHHHhCCCEeeccccccChHHHHHHHHHHHhhccccccccccccCcccc
Confidence 34455 55999999976 4444 5999999999876 45688888888887776433344444333322111
Q ss_pred HH--HHHhhcCCCCcccccccccccccccccccchhhHHHHhh------cCCCCCcHHHHHHHHHhcCCcEEEEeecCHH
Q 019244 140 EA--DIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAG------QIDRSLSWKDVKWLQTITKLPILVKGVLTAE 211 (344)
Q Consensus 140 ~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~i~~i~~~~~~PvivK~v~~~~ 211 (344)
.. ..+..+. . ....+. ++.. .. ....+...... ..-+....+.++.+++. ++.++.. +.|++
T Consensus 78 ~~~~~~~~~~~--~--~~~~~~-~~~~-~~--~~~~~~~~~~~~~~~v~~~~G~p~~~~i~~l~~~-gi~v~~~-v~s~~ 147 (330)
T PF03060_consen 78 DEEDAWPKELG--N--AVLELC-IEEG-VP--FEEQLDVALEAKPDVVSFGFGLPPPEVIERLHAA-GIKVIPQ-VTSVR 147 (330)
T ss_dssp HH-HHHHHHTH--H--HHHHHH-HHTT--S--HHHHHHHHHHS--SEEEEESSSC-HHHHHHHHHT-T-EEEEE-ESSHH
T ss_pred hhhhhhhhhhH--H--HHHHHH-HHhC-cc--cccccccccccceEEEEeecccchHHHHHHHHHc-CCccccc-cCCHH
Confidence 11 0000000 0 000000 0000 00 00000000000 00111124567777764 7777764 78999
Q ss_pred HHHHHHHcCCcEEEEccC--CCCCC-CCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 212 DARIAVQAGAAGIIVSNH--GARQL-DYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 212 ~a~~~~~~G~d~I~v~~~--gG~~~-~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
+|+++.++|+|+|++.|. ||+.. +.+ ++...++++++.+ ++|||+.|||.++.+++.+|+|||++|++|+.|+.
T Consensus 148 ~A~~a~~~G~D~iv~qG~eAGGH~g~~~~-~~~~L~~~v~~~~--~iPViaAGGI~dg~~iaaal~lGA~gV~~GTrFl~ 224 (330)
T PF03060_consen 148 EARKAAKAGADAIVAQGPEAGGHRGFEVG-STFSLLPQVRDAV--DIPVIAAGGIADGRGIAAALALGADGVQMGTRFLA 224 (330)
T ss_dssp HHHHHHHTT-SEEEEE-TTSSEE---SSG--HHHHHHHHHHH---SS-EEEESS--SHHHHHHHHHCT-SEEEESHHHHT
T ss_pred HHHHhhhcCCCEEEEeccccCCCCCcccc-ceeeHHHHHhhhc--CCcEEEecCcCCHHHHHHHHHcCCCEeecCCeEEe
Confidence 999999999999999874 66543 222 5788889998887 69999999999999999999999999999999985
Q ss_pred H
Q 019244 289 S 289 (344)
Q Consensus 289 ~ 289 (344)
.
T Consensus 225 t 225 (330)
T PF03060_consen 225 T 225 (330)
T ss_dssp S
T ss_pred c
Confidence 3
|
13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A. |
| >TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.1e-13 Score=129.66 Aligned_cols=140 Identities=26% Similarity=0.311 Sum_probs=97.9
Q ss_pred CCcHHHHHHHHHhcCCcEEEEeec--------CHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCc
Q 019244 185 SLSWKDVKWLQTITKLPILVKGVL--------TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIP 256 (344)
Q Consensus 185 ~~~~~~i~~i~~~~~~PvivK~v~--------~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~ 256 (344)
.+..+.++++++.+++||.+|... ..+.++.+.++|+|+|++++.-..+...+++.++.+.++++.+ ++|
T Consensus 117 ~~~~ei~~~vr~~~~~pv~vKir~g~~~~~~~~~~~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~ip 194 (319)
T TIGR00737 117 DLIGKIVKAVVDAVDIPVTVKIRIGWDDAHINAVEAARIAEDAGAQAVTLHGRTRAQGYSGEANWDIIARVKQAV--RIP 194 (319)
T ss_pred HHHHHHHHHHHhhcCCCEEEEEEcccCCCcchHHHHHHHHHHhCCCEEEEEcccccccCCCchhHHHHHHHHHcC--CCc
Confidence 445567999999999999999842 2355788999999999995421111223456778888888877 699
Q ss_pred EEEecCCCCHHHHHHHH-HcCCCEEEEchHHHHH--h---h----hcCh----HHHHHHHHHHHHHHHHHHHHhCCC-CH
Q 019244 257 VFLDGGVRRGTDVFKAL-ALGASGIFIGRPVVYS--L---A----AEGE----KGVRRVLEMLREEFELAMALSGCR-SL 321 (344)
Q Consensus 257 via~GGIr~g~dv~kal-alGAd~V~ig~~~l~~--~---~----~~G~----~~v~~~l~~l~~el~~~m~~~G~~-~i 321 (344)
||++|||.+++|+.+++ ..|||+||+||+++.. + . ..|. ....+.++.+.+.++......|.. .+
T Consensus 195 vi~nGgI~~~~da~~~l~~~gad~VmigR~~l~~P~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 274 (319)
T TIGR00737 195 VIGNGDIFSPEDAKAMLETTGCDGVMIGRGALGNPWLFRQIEQYLTTGKYKPPPTFAEKLDAILRHLQLLADYYGESKGL 274 (319)
T ss_pred EEEeCCCCCHHHHHHHHHhhCCCEEEEChhhhhCChHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHhCcchHH
Confidence 99999999999999999 5799999999987632 0 0 1121 123345566666776666666632 34
Q ss_pred hhhcc
Q 019244 322 KEITR 326 (344)
Q Consensus 322 ~~l~~ 326 (344)
..+++
T Consensus 275 ~~~r~ 279 (319)
T TIGR00737 275 RIARK 279 (319)
T ss_pred HHHHH
Confidence 44443
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >PRK10415 tRNA-dihydrouridine synthase B; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.8e-13 Score=127.36 Aligned_cols=142 Identities=18% Similarity=0.201 Sum_probs=103.0
Q ss_pred CCCcHHHHHHHHHhcCCcEEEEeec--------CHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCC
Q 019244 184 RSLSWKDVKWLQTITKLPILVKGVL--------TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRI 255 (344)
Q Consensus 184 ~~~~~~~i~~i~~~~~~PvivK~v~--------~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~ 255 (344)
+++..+.++.+++.+++||.+|... ..+-++.+.++|+|+|++.+.-..+...|...++.+.++++.+ ++
T Consensus 118 p~~~~eiv~av~~a~d~pv~vKiR~G~~~~~~~~~~~a~~le~~G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~--~i 195 (321)
T PRK10415 118 PDLVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKV--SI 195 (321)
T ss_pred HHHHHHHHHHHHHhcCCceEEEEEccccCCcchHHHHHHHHHHhCCCEEEEecCccccccCCCcChHHHHHHHHhc--CC
Confidence 3445567889999889999999852 1245678899999999995422123334667788899998877 79
Q ss_pred cEEEecCCCCHHHHHHHHH-cCCCEEEEchHHH-----HHhh----hcCh----HHHHHHHHHHHHHHHHHHHHhCCC-C
Q 019244 256 PVFLDGGVRRGTDVFKALA-LGASGIFIGRPVV-----YSLA----AEGE----KGVRRVLEMLREEFELAMALSGCR-S 320 (344)
Q Consensus 256 ~via~GGIr~g~dv~kala-lGAd~V~ig~~~l-----~~~~----~~G~----~~v~~~l~~l~~el~~~m~~~G~~-~ 320 (344)
|||++|||+|..|+.+++. .|||+||+||+++ +.-. ..|+ ...++.++.+.++++....+.|.+ .
T Consensus 196 PVI~nGgI~s~~da~~~l~~~gadgVmiGR~~l~nP~if~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (321)
T PRK10415 196 PVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKG 275 (321)
T ss_pred cEEEeCCCCCHHHHHHHHhccCCCEEEEChHhhcCChHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHChHHH
Confidence 9999999999999999997 6999999999664 3211 1121 224566777788888777777653 4
Q ss_pred Hhhhccc
Q 019244 321 LKEITRD 327 (344)
Q Consensus 321 i~~l~~~ 327 (344)
+.++++.
T Consensus 276 ~~~~rk~ 282 (321)
T PRK10415 276 YRIARKH 282 (321)
T ss_pred HHHHHHH
Confidence 5566654
|
|
| >TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II | Back alignment and domain information |
|---|
Probab=99.52 E-value=9.3e-13 Score=125.60 Aligned_cols=185 Identities=23% Similarity=0.276 Sum_probs=122.4
Q ss_pred eecccccccceeecccccccccCChhhHHHHHHHHHcCCcc----ccCCHHHHHHHHHHHHHcCCcEEEeccCCcccccc
Q 019244 64 TVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM----VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRR 139 (344)
Q Consensus 64 ~l~g~~l~~Pi~iapm~~~~~~~~~~~~~lA~aA~~~g~~~----~~~d~~~~~~~i~~a~~ag~~~l~~tvd~~~~g~r 139 (344)
++||. .+||+.+||++ .+++ .|+.+++++|... ...+++..++.++++++..-+.+.+++-.... .
T Consensus 6 ~~lgi--~~Pii~apM~~--~s~~----~la~avs~aGglG~l~~~~~~~~~l~~~i~~~~~~t~~pfgvn~~~~~~--~ 75 (307)
T TIGR03151 6 DLLGI--EYPIFQGGMAW--VATG----SLAAAVSNAGGLGIIGAGNAPPDVVRKEIRKVKELTDKPFGVNIMLLSP--F 75 (307)
T ss_pred HHhCC--CCCEEcCCCCC--CCCH----HHHHHHHhCCCcceeccccCCHHHHHHHHHHHHHhcCCCcEEeeecCCC--C
Confidence 34554 56999999976 3333 6999999999776 23467778778888776322222222211100 0
Q ss_pred HHHHHhhcCCCCcccccccccccccccccccchhhHHHHh-hcCCCCCcHHHHHHHHHhcCCcEEEEeecCHHHHHHHHH
Q 019244 140 EADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVA-GQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQ 218 (344)
Q Consensus 140 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~i~~~~~~PvivK~v~~~~~a~~~~~ 218 (344)
..+.... + ++. .. ..+. ..+. ..+.++++++. +++|+. .+.+.+.++++.+
T Consensus 76 ~~~~~~~-----------~--~~~------~v----~~v~~~~g~---p~~~i~~lk~~-g~~v~~-~v~s~~~a~~a~~ 127 (307)
T TIGR03151 76 VDELVDL-----------V--IEE------KV----PVVTTGAGN---PGKYIPRLKEN-GVKVIP-VVASVALAKRMEK 127 (307)
T ss_pred HHHHHHH-----------H--HhC------CC----CEEEEcCCC---cHHHHHHHHHc-CCEEEE-EcCCHHHHHHHHH
Confidence 0000000 0 000 00 0000 0011 23478888875 777765 4688999999999
Q ss_pred cCCcEEEEccC--CCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHh
Q 019244 219 AGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSL 290 (344)
Q Consensus 219 ~G~d~I~v~~~--gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~ 290 (344)
+|+|.|++.++ ||+. +..+++..++++++.+ ++|||++|||.++.|+.+++++||++|++|+.|+...
T Consensus 128 ~GaD~Ivv~g~eagGh~--g~~~~~~ll~~v~~~~--~iPviaaGGI~~~~~~~~al~~GA~gV~iGt~f~~t~ 197 (307)
T TIGR03151 128 AGADAVIAEGMESGGHI--GELTTMALVPQVVDAV--SIPVIAAGGIADGRGMAAAFALGAEAVQMGTRFLCAK 197 (307)
T ss_pred cCCCEEEEECcccCCCC--CCCcHHHHHHHHHHHh--CCCEEEECCCCCHHHHHHHHHcCCCEeecchHHhccc
Confidence 99999999875 4442 2235788999998877 6999999999999999999999999999999998643
|
This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase. |
| >TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2 | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.3e-12 Score=126.04 Aligned_cols=101 Identities=24% Similarity=0.325 Sum_probs=76.4
Q ss_pred HHHHHHHHHhcC-------CcEEEEeec--C----HHHHHHHHHcCCcEEEEccCCC-C--------C-CC---Cchh--
Q 019244 188 WKDVKWLQTITK-------LPILVKGVL--T----AEDARIAVQAGAAGIIVSNHGA-R--------Q-LD---YVPA-- 239 (344)
Q Consensus 188 ~~~i~~i~~~~~-------~PvivK~v~--~----~~~a~~~~~~G~d~I~v~~~gG-~--------~-~~---~g~~-- 239 (344)
.+.++++++.++ +||++|... + .+.++.+.++|+|+|++.|+-- + . .. .|++
T Consensus 192 ~~i~~~V~~~~~~~~~~~~~Pv~vKLsP~~~~~~i~~ia~~~~~~GadGi~l~NT~~~~~~~~~~~~~~~~GGlSG~~i~ 271 (335)
T TIGR01036 192 RDLLTAVKQEQDGLRRVHRVPVLVKIAPDLTESDLEDIADSLVELGIDGVIATNTTVSRSLVQGPKNSDETGGLSGKPLQ 271 (335)
T ss_pred HHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEECCCCccccccCccccCCCCcccCHHHH
Confidence 345777777765 999999973 2 2446789999999999988411 0 0 01 1222
Q ss_pred --hHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 240 --TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 240 --~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
.+..+.++++.+++++|||+.|||.+++|+.+++.+||++|++||.+++
T Consensus 272 p~al~~v~~~~~~~~~~ipiig~GGI~~~~da~e~l~aGA~~Vqv~ta~~~ 322 (335)
T TIGR01036 272 DKSTEIIRRLYAELQGRLPIIGVGGISSAQDALEKIRAGASLLQIYSGFIY 322 (335)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCcHHHhhHHHHH
Confidence 3445666666666679999999999999999999999999999999986
|
The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region. |
| >cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.8e-12 Score=121.22 Aligned_cols=151 Identities=26% Similarity=0.366 Sum_probs=110.1
Q ss_pred cCCcc----ccCCHHHHHHHHHHHHHcCCcEEEeccCCccccccHHHHHhhcCCCCcccccccccccccccccccchhhH
Q 019244 100 AGTIM----VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLA 175 (344)
Q Consensus 100 ~g~~~----~~~d~~~~~~~i~~a~~ag~~~l~~tvd~~~~g~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 175 (344)
.+.++ ...+++...+.+++++++|++.+.+++.+|..... ..+
T Consensus 97 ~~~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~----------------~~~----------------- 143 (289)
T cd02810 97 PGQPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGGG----------------RQL----------------- 143 (289)
T ss_pred CCCeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCC----------------ccc-----------------
Confidence 35666 34577777788888888999999999988853210 000
Q ss_pred HHHhhcCCCCCcHHHHHHHHHhcCCcEEEEee--cC----HHHHHHHHHcCCcEEEEccC-CCCC------------CC-
Q 019244 176 AYVAGQIDRSLSWKDVKWLQTITKLPILVKGV--LT----AEDARIAVQAGAAGIIVSNH-GARQ------------LD- 235 (344)
Q Consensus 176 ~~~~~~~~~~~~~~~i~~i~~~~~~PvivK~v--~~----~~~a~~~~~~G~d~I~v~~~-gG~~------------~~- 235 (344)
..++.+..+.++++++.+++||++|.. .+ .+.++.+.++|+|+|+++|+ .++. ..
T Consensus 144 -----~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (289)
T cd02810 144 -----GQDPEAVANLLKAVKAAVDIPLLVKLSPYFDLEDIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTG 218 (289)
T ss_pred -----ccCHHHHHHHHHHHHHccCCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCccceecccCccccCCCCC
Confidence 001122345788999888999999986 34 35578899999999999874 2110 00
Q ss_pred --Cch----hhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 236 --YVP----ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 236 --~g~----~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
.|. ..++.+.++++.++.++|||++|||++++|+.+++++|||+|++||+++.
T Consensus 219 g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GGI~~~~da~~~l~~GAd~V~vg~a~~~ 277 (289)
T cd02810 219 GLSGAPIRPLALRWVARLAARLQLDIPIIGVGGIDSGEDVLEMLMAGASAVQVATALMW 277 (289)
T ss_pred ccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCccHheEcHHHHh
Confidence 111 24566778877765479999999999999999999999999999999986
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of |
| >KOG1436 consensus Dihydroorotate dehydrogenase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.8e-12 Score=118.88 Aligned_cols=121 Identities=27% Similarity=0.436 Sum_probs=96.0
Q ss_pred CCcEEEEeec--CH----HHHHHHHHcCCcEEEEccCC-CCC----------CC---Cch----hhHHHHHHHHHHccCC
Q 019244 199 KLPILVKGVL--TA----EDARIAVQAGAAGIIVSNHG-ARQ----------LD---YVP----ATIMALEEVVKATQGR 254 (344)
Q Consensus 199 ~~PvivK~v~--~~----~~a~~~~~~G~d~I~v~~~g-G~~----------~~---~g~----~~~~~l~~i~~~~~~~ 254 (344)
+.|+.+|... +. +.+....+.+.|+++++|.- -|. -. .|+ .+...++++....+++
T Consensus 252 ~~pvl~kiapDL~~~el~dia~v~kk~~idg~IvsnttVsrp~~~~~~~~~~etGGLsG~plk~~st~~vR~mY~lt~g~ 331 (398)
T KOG1436|consen 252 KPPVLVKIAPDLSEKELKDIALVVKKLNIDGLIVSNTTVSRPKASLVNKLKEETGGLSGPPLKPISTNTVRAMYTLTRGK 331 (398)
T ss_pred CCceEEEeccchhHHHHHHHHHHHHHhCccceeecCceeecCccccccccccccCCCCCCccchhHHHHHHHHHHhccCC
Confidence 3699999873 22 23555678999999998741 110 00 122 2456788888888889
Q ss_pred CcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHhhhccc
Q 019244 255 IPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRD 327 (344)
Q Consensus 255 ~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~~~i~~l~~~ 327 (344)
+|||..|||.||.|+.+-+.+||+.|++++.+.| +|. .+++.++.||...|...|.+++.|+.+.
T Consensus 332 IpiIG~GGV~SG~DA~EkiraGASlvQlyTal~y----eGp----~i~~kIk~El~~ll~~kG~t~v~d~iG~ 396 (398)
T KOG1436|consen 332 IPIIGCGGVSSGKDAYEKIRAGASLVQLYTALVY----EGP----AIIEKIKRELSALLKAKGFTSVDDAIGK 396 (398)
T ss_pred CceEeecCccccHhHHHHHhcCchHHHHHHHHhh----cCc----hhHHHHHHHHHHHHHhcCCCcHHHhccC
Confidence 9999999999999999999999999999999876 355 3789999999999999999999998764
|
|
| >COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.7e-12 Score=121.89 Aligned_cols=195 Identities=25% Similarity=0.278 Sum_probs=125.4
Q ss_pred ccccccceeecccccccccCChhhHHHHHHHHHcCCcc----ccCCHHHHHHHHHHHHHcCCcEEEeccCCccccccHHH
Q 019244 67 GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM----VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREAD 142 (344)
Q Consensus 67 g~~l~~Pi~iapm~~~~~~~~~~~~~lA~aA~~~g~~~----~~~d~~~~~~~i~~a~~ag~~~l~~tvd~~~~g~r~~~ 142 (344)
+..+.+||+-+||++ .+++ .||.+..+.|.+. .....+..++.++++++..-+....+...+...
T Consensus 10 ~~~i~~PIiq~gM~~--vs~~----~LA~Avs~aGglG~ia~~~~~~e~l~~~i~~~~~~~~~p~~~~~f~~~~~----- 78 (336)
T COG2070 10 LLGIKYPIIQGGMAG--VSTP----ELAAAVSNAGGLGIIASGGLPAEQLRAEIRKIRALTDKPFVANNFGSAPA----- 78 (336)
T ss_pred ccCccCCeecCCccc--cCcH----HHHHHHhccCCccccccccCCHHHHHHHHHHHHHhcCCcchhcccccccc-----
Confidence 456778999999976 4444 6999999998776 334556677778777654433222121111100
Q ss_pred HHhhcCCCCcccccccccccccccccccchhhHHHHhhcCC----CC---CcHHHHHHHHHhcCCcEEEEeecCHHHHHH
Q 019244 143 IKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQID----RS---LSWKDVKWLQTITKLPILVKGVLTAEDARI 215 (344)
Q Consensus 143 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~i~~i~~~~~~PvivK~v~~~~~a~~ 215 (344)
|.. .-.+... .+.... .....+...+- .. ..-+.++.++. .+..++.+ +.++..|++
T Consensus 79 -------~v~--~~~l~~~-~~~~~~----~~~~ii~~~~vpvv~~~~g~~~~~~i~~~~~-~g~~v~~~-v~~~~~A~~ 142 (336)
T COG2070 79 -------PVN--VNILVAR-RNAAEA----GVDAIIEGAGVPVVSTSFGAPPAEFVARLKA-AGIKVIHS-VITVREALK 142 (336)
T ss_pred -------cch--hheeccc-ccchHH----hhhhHHhcCCCCEEeccCCCCcHHHHHHHHH-cCCeEEEE-eCCHHHHHH
Confidence 000 0000000 000000 00000100000 11 13456888877 57777765 678999999
Q ss_pred HHHcCCcEEEEccC--CCCCC--CCchhhHHHHHHHHHHccCC-CcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHh
Q 019244 216 AVQAGAAGIIVSNH--GARQL--DYVPATIMALEEVVKATQGR-IPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSL 290 (344)
Q Consensus 216 ~~~~G~d~I~v~~~--gG~~~--~~g~~~~~~l~~i~~~~~~~-~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~ 290 (344)
+.++|+|+|++.+. ||+.- +..+++...++++++++ + +|||++|||.++.++..|++|||++|+|||.|+..-
T Consensus 143 ~~~~G~d~vI~~g~eAGGH~g~~~~~~~t~~Lv~ev~~~~--~~iPViAAGGI~dg~~i~AAlalGA~gVq~GT~Fl~t~ 220 (336)
T COG2070 143 AERAGADAVIAQGAEAGGHRGGVDLEVSTFALVPEVVDAV--DGIPVIAAGGIADGRGIAAALALGADGVQMGTRFLATK 220 (336)
T ss_pred HHhCCCCEEEecCCcCCCcCCCCCCCccHHHHHHHHHHHh--cCCCEEEecCccChHHHHHHHHhccHHHHhhhhhhccc
Confidence 99999999999874 55532 34567888999999988 5 999999999999999999999999999999998643
|
|
| >COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.2e-11 Score=115.70 Aligned_cols=143 Identities=31% Similarity=0.428 Sum_probs=111.3
Q ss_pred CCCcHHHHHHHHHhcC-CcEEEEeec--------CHHHHHHHHHcCCcEEEEccCCCC--CCCCchhhHHHHHHHHHHcc
Q 019244 184 RSLSWKDVKWLQTITK-LPILVKGVL--------TAEDARIAVQAGAAGIIVSNHGAR--QLDYVPATIMALEEVVKATQ 252 (344)
Q Consensus 184 ~~~~~~~i~~i~~~~~-~PvivK~v~--------~~~~a~~~~~~G~d~I~v~~~gG~--~~~~g~~~~~~l~~i~~~~~ 252 (344)
++...+.|+.+++.++ +||.||... ..+.++.+.++|++.++| ||.+ +...++..++.+.++++.++
T Consensus 120 p~lv~~iv~a~~~av~~iPVTVKiRlG~d~~~~~~~~ia~~~~~~g~~~ltV--HgRtr~~~y~~~ad~~~I~~vk~~~~ 197 (323)
T COG0042 120 PELLAEIVKAMVEAVGDIPVTVKIRLGWDDDDILALEIARILEDAGADALTV--HGRTRAQGYLGPADWDYIKELKEAVP 197 (323)
T ss_pred HHHHHHHHHHHHHhhCCCCeEEEEecccCcccccHHHHHHHHHhcCCCEEEE--ecccHHhcCCCccCHHHHHHHHHhCC
Confidence 3445567999999995 999999862 235688899999999999 5443 34456788999999999884
Q ss_pred CCCcEEEecCCCCHHHHHHHHH-cCCCEEEEchHH-----HHHh---hhcCh---HHHHHHHHHHHHHHHHHHHHhCCCC
Q 019244 253 GRIPVFLDGGVRRGTDVFKALA-LGASGIFIGRPV-----VYSL---AAEGE---KGVRRVLEMLREEFELAMALSGCRS 320 (344)
Q Consensus 253 ~~~~via~GGIr~g~dv~kala-lGAd~V~ig~~~-----l~~~---~~~G~---~~v~~~l~~l~~el~~~m~~~G~~~ 320 (344)
. +|||++|+|.|.+|+.+.|. .|+|+||+||.. ++.- ...|+ ......++.+...++......|...
T Consensus 198 ~-ipvi~NGdI~s~~~a~~~l~~tg~DgVMigRga~~nP~l~~~i~~~~~g~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 276 (323)
T COG0042 198 S-IPVIANGDIKSLEDAKEMLEYTGADGVMIGRGALGNPWLFRQIDYLETGELLPPTLAEVLDILREHLELLLEYYGKKG 276 (323)
T ss_pred C-CeEEeCCCcCCHHHHHHHHHhhCCCEEEEcHHHccCCcHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHhccccH
Confidence 3 99999999999999999999 689999999954 4331 12233 3566788889999999999988667
Q ss_pred Hhhhcccce
Q 019244 321 LKEITRDHI 329 (344)
Q Consensus 321 i~~l~~~~l 329 (344)
+..++++..
T Consensus 277 ~~~~r~h~~ 285 (323)
T COG0042 277 LRRLRKHLG 285 (323)
T ss_pred HHHHHHHHH
Confidence 777776643
|
|
| >TIGR00742 yjbN tRNA dihydrouridine synthase A | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.7e-11 Score=112.88 Aligned_cols=145 Identities=21% Similarity=0.330 Sum_probs=98.1
Q ss_pred cCCHHHHHHHHHHHHHcCCcEEEeccCCccccccHHHHHhhcCCCCcccccccccccccccccccchhhHHHHhhcCCCC
Q 019244 106 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 185 (344)
Q Consensus 106 ~~d~~~~~~~i~~a~~ag~~~l~~tvd~~~~g~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (344)
..|++...+..+.+++.|++.+-++..+|..-.+ +.++ +. .++ .+++
T Consensus 63 g~~p~~~~~aA~~~~~~g~d~IDlN~GCP~~~v~----~~g~------Gs--------------------~Ll---~~p~ 109 (318)
T TIGR00742 63 GSDPNDLAKCAKIAEKRGYDEINLNVGCPSDRVQ----NGNF------GA--------------------CLM---GNAD 109 (318)
T ss_pred cCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhC----CCCe------eh--------------------Hhh---cCHH
Confidence 4566666666666666777777777777643100 0000 00 000 1233
Q ss_pred CcHHHHHHHHHhcCCcEEEEeec------CH----HHHHHHHHcCCcEEEEccCCCCC---C-------CCchhhHHHHH
Q 019244 186 LSWKDVKWLQTITKLPILVKGVL------TA----EDARIAVQAGAAGIIVSNHGARQ---L-------DYVPATIMALE 245 (344)
Q Consensus 186 ~~~~~i~~i~~~~~~PvivK~v~------~~----~~a~~~~~~G~d~I~v~~~gG~~---~-------~~g~~~~~~l~ 245 (344)
+..+.++.+++.+++||.||... +. +-++.+.++|++.|+|. |++. . ...+..++.+.
T Consensus 110 ~~~~iv~av~~~~~~PVsvKiR~g~~~~~~~~~~~~~~~~l~~~G~~~itvH--gRt~~~qg~sg~~~~~~~~~~~~~i~ 187 (318)
T TIGR00742 110 LVADCVKAMQEAVNIPVTVKHRIGIDPLDSYEFLCDFVEIVSGKGCQNFIVH--ARKAWLSGLSPKENREIPPLRYERVY 187 (318)
T ss_pred HHHHHHHHHHHHhCCCeEEEEecCCCCcchHHHHHHHHHHHHHcCCCEEEEe--CCchhhcCCCccccccCCchhHHHHH
Confidence 45567999999889999999863 11 23678889999999994 4431 1 11223566777
Q ss_pred HHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHH
Q 019244 246 EVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 287 (344)
Q Consensus 246 ~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l 287 (344)
++++.+. ++|||++|||+|.+|+.+.+. |||+|||||.++
T Consensus 188 ~vk~~~~-~ipVi~NGdI~s~~da~~~l~-g~dgVMigRgal 227 (318)
T TIGR00742 188 QLKKDFP-HLTIEINGGIKNSEQIKQHLS-HVDGVMVGREAY 227 (318)
T ss_pred HHHHhCC-CCcEEEECCcCCHHHHHHHHh-CCCEEEECHHHH
Confidence 7776653 699999999999999999996 999999999654
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >PRK10550 tRNA-dihydrouridine synthase C; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1e-10 Score=111.71 Aligned_cols=102 Identities=25% Similarity=0.326 Sum_probs=79.2
Q ss_pred CCCcHHHHHHHHHhc--CCcEEEEeec-------CHHHHHHHHHcCCcEEEEccCCCCCCCCchh-hHHHHHHHHHHccC
Q 019244 184 RSLSWKDVKWLQTIT--KLPILVKGVL-------TAEDARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQG 253 (344)
Q Consensus 184 ~~~~~~~i~~i~~~~--~~PvivK~v~-------~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~-~~~~l~~i~~~~~~ 253 (344)
+++..+.++.+++.+ ++||.||... ..+-++.+.++|+|.|+|++.-..+...+++ .++.+.++++.+
T Consensus 116 ~~~~~eiv~avr~~~~~~~pVsvKiR~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~-- 193 (312)
T PRK10550 116 PELIYQGAKAMREAVPAHLPVTVKVRLGWDSGERKFEIADAVQQAGATELVVHGRTKEDGYRAEHINWQAIGEIRQRL-- 193 (312)
T ss_pred HHHHHHHHHHHHHhcCCCcceEEEEECCCCCchHHHHHHHHHHhcCCCEEEECCCCCccCCCCCcccHHHHHHHHhhc--
Confidence 344566789999988 4999999752 1244688899999999995422223334544 678888888877
Q ss_pred CCcEEEecCCCCHHHHHHHHH-cCCCEEEEchHHH
Q 019244 254 RIPVFLDGGVRRGTDVFKALA-LGASGIFIGRPVV 287 (344)
Q Consensus 254 ~~~via~GGIr~g~dv~kala-lGAd~V~ig~~~l 287 (344)
++|||++|||.|++|+.+++. .|||+||+||.++
T Consensus 194 ~iPVi~nGdI~t~~da~~~l~~~g~DgVmiGRg~l 228 (312)
T PRK10550 194 TIPVIANGEIWDWQSAQQCMAITGCDAVMIGRGAL 228 (312)
T ss_pred CCcEEEeCCcCCHHHHHHHHhccCCCEEEEcHHhH
Confidence 799999999999999999996 7899999999654
|
|
| >cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.3e-10 Score=105.98 Aligned_cols=148 Identities=25% Similarity=0.282 Sum_probs=104.6
Q ss_pred cCCHHHHHHHHHHHHHcCCcEEEeccCCccccccHHHHHhhcCCCCcccccccccccccccccccchhhHHHHhhcCCCC
Q 019244 106 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 185 (344)
Q Consensus 106 ~~d~~~~~~~i~~a~~ag~~~l~~tvd~~~~g~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (344)
..+++...+..++++++|++.+.++..+|.. +... .++ +. ..+.++.
T Consensus 63 g~~~~~~~~aa~~~~~aG~d~ieln~g~p~~-~~~~---~~~-----------G~------------------~l~~~~~ 109 (231)
T cd02801 63 GSDPETLAEAAKIVEELGADGIDLNMGCPSP-KVTK---GGA-----------GA------------------ALLKDPE 109 (231)
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEEeCCCCHH-HHhC---CCe-----------ee------------------hhcCCHH
Confidence 4567777777788888888888888877642 1100 000 00 0011234
Q ss_pred CcHHHHHHHHHhcCCcEEEEeecCH-------HHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEE
Q 019244 186 LSWKDVKWLQTITKLPILVKGVLTA-------EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 258 (344)
Q Consensus 186 ~~~~~i~~i~~~~~~PvivK~v~~~-------~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~vi 258 (344)
+..+.++++++.+++|+.+|..... +.++.+.++|+|+|.+++....+...++..++.+..+++.. ++||+
T Consensus 110 ~~~eii~~v~~~~~~~v~vk~r~~~~~~~~~~~~~~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~--~ipvi 187 (231)
T cd02801 110 LVAEIVRAVREAVPIPVTVKIRLGWDDEEETLELAKALEDAGASALTVHGRTREQRYSGPADWDYIAEIKEAV--SIPVI 187 (231)
T ss_pred HHHHHHHHHHHhcCCCEEEEEeeccCCchHHHHHHHHHHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHhCC--CCeEE
Confidence 4556799999988899999986321 33577889999999996532222223455677778877754 79999
Q ss_pred EecCCCCHHHHHHHHHc-CCCEEEEchHHHH
Q 019244 259 LDGGVRRGTDVFKALAL-GASGIFIGRPVVY 288 (344)
Q Consensus 259 a~GGIr~g~dv~kalal-GAd~V~ig~~~l~ 288 (344)
++|||++.+|+.+++.. |||+|++||+++.
T Consensus 188 ~~Ggi~~~~d~~~~l~~~gad~V~igr~~l~ 218 (231)
T cd02801 188 ANGDIFSLEDALRCLEQTGVDGVMIGRGALG 218 (231)
T ss_pred EeCCCCCHHHHHHHHHhcCCCEEEEcHHhHh
Confidence 99999999999999998 8999999999875
|
Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present. |
| >cd02911 arch_FMN Archeal FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.7e-10 Score=105.89 Aligned_cols=91 Identities=22% Similarity=0.182 Sum_probs=71.6
Q ss_pred CcHHHHHHHHHhcCCcEEEEeec-----CHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEe
Q 019244 186 LSWKDVKWLQTITKLPILVKGVL-----TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD 260 (344)
Q Consensus 186 ~~~~~i~~i~~~~~~PvivK~v~-----~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~ 260 (344)
...+.++.+++ .++||.+|... +.+.++.+.++|+|+|.+++.. ......++.+.+++ . ++|||++
T Consensus 127 ~l~eiv~avr~-~~~pVsvKir~g~~~~~~~la~~l~~aG~d~ihv~~~~----~g~~ad~~~I~~i~--~--~ipVIgn 197 (233)
T cd02911 127 RLSEFIKALKE-TGVPVSVKIRAGVDVDDEELARLIEKAGADIIHVDAMD----PGNHADLKKIRDIS--T--ELFIIGN 197 (233)
T ss_pred HHHHHHHHHHh-cCCCEEEEEcCCcCcCHHHHHHHHHHhCCCEEEECcCC----CCCCCcHHHHHHhc--C--CCEEEEE
Confidence 34556888887 59999999962 3466788999999999886421 11234566676664 3 7999999
Q ss_pred cCCCCHHHHHHHHHcCCCEEEEchH
Q 019244 261 GGVRRGTDVFKALALGASGIFIGRP 285 (344)
Q Consensus 261 GGIr~g~dv~kalalGAd~V~ig~~ 285 (344)
|||.+.+|+.+++..|||+||+||+
T Consensus 198 GgI~s~eda~~~l~~GaD~VmiGR~ 222 (233)
T cd02911 198 NSVTTIESAKEMFSYGADMVSVARA 222 (233)
T ss_pred CCcCCHHHHHHHHHcCCCEEEEcCC
Confidence 9999999999999999999999996
|
This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown. |
| >PRK11815 tRNA-dihydrouridine synthase A; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.3e-10 Score=107.94 Aligned_cols=141 Identities=22% Similarity=0.287 Sum_probs=93.1
Q ss_pred CCCCcHHHHHHHHHhcCCcEEEEeec------C----HHHHHHHHHcCCcEEEEccCCC-CCC-------CCchhhHHHH
Q 019244 183 DRSLSWKDVKWLQTITKLPILVKGVL------T----AEDARIAVQAGAAGIIVSNHGA-RQL-------DYVPATIMAL 244 (344)
Q Consensus 183 ~~~~~~~~i~~i~~~~~~PvivK~v~------~----~~~a~~~~~~G~d~I~v~~~gG-~~~-------~~g~~~~~~l 244 (344)
++++..+.++.+++.+++||.+|... + .+-++.+.++|+|+|+|.+.-+ .+. ...+..++.+
T Consensus 117 ~p~~~~eiv~avr~~v~~pVsvKiR~g~~~~~t~~~~~~~~~~l~~aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i 196 (333)
T PRK11815 117 EPELVADCVKAMKDAVSIPVTVKHRIGIDDQDSYEFLCDFVDTVAEAGCDTFIVHARKAWLKGLSPKENREIPPLDYDRV 196 (333)
T ss_pred CHHHHHHHHHHHHHHcCCceEEEEEeeeCCCcCHHHHHHHHHHHHHhCCCEEEEcCCchhhcCCCccccccCCCcCHHHH
Confidence 34455678999999889999999742 1 2336778899999999964211 111 1123356777
Q ss_pred HHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHH-----hh---hcCh----HHHHHHHHHHHHHHHHH
Q 019244 245 EEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS-----LA---AEGE----KGVRRVLEMLREEFELA 312 (344)
Q Consensus 245 ~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~-----~~---~~G~----~~v~~~l~~l~~el~~~ 312 (344)
.++++.+ .++|||++|||+|.+|+.++++ |||+||+||+++.. -. ..|. ....+.++.+.+.++..
T Consensus 197 ~~v~~~~-~~iPVI~nGgI~s~eda~~~l~-~aDgVmIGRa~l~nP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (333)
T PRK11815 197 YRLKRDF-PHLTIEINGGIKTLEEAKEHLQ-HVDGVMIGRAAYHNPYLLAEVDRELFGEPAPPLSRSEVLEAMLPYIERH 274 (333)
T ss_pred HHHHHhC-CCCeEEEECCcCCHHHHHHHHh-cCCEEEEcHHHHhCCHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHH
Confidence 7777654 2699999999999999999997 89999999977532 11 0121 12345556666666665
Q ss_pred HHHhCCCCHhhhccc
Q 019244 313 MALSGCRSLKEITRD 327 (344)
Q Consensus 313 m~~~G~~~i~~l~~~ 327 (344)
... |. .+..+++.
T Consensus 275 ~~~-~~-~~~~~rk~ 287 (333)
T PRK11815 275 LAQ-GG-RLNHITRH 287 (333)
T ss_pred HHc-Cc-hHHHHHHH
Confidence 553 33 35555544
|
|
| >cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS) | Back alignment and domain information |
|---|
Probab=99.22 E-value=6.9e-10 Score=105.61 Aligned_cols=183 Identities=16% Similarity=0.184 Sum_probs=115.7
Q ss_pred ccceeecccccccccCChhhHHHHHHHHHcCCcc----ccCCHHHHHHHHHHHHHc-CCcEEEeccCCccc-cccHHHHH
Q 019244 71 SMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM----VYKDRNVVAQLVRRAERA-GFKAIALTVDTPRL-GRREADIK 144 (344)
Q Consensus 71 ~~Pi~iapm~~~~~~~~~~~~~lA~aA~~~g~~~----~~~d~~~~~~~i~~a~~a-g~~~l~~tvd~~~~-g~r~~~~~ 144 (344)
.+||+.+||++.. . .-.||.+.+++|... .+.+++..++.++++++. +-+.+.+++-.... ..+...+.
T Consensus 2 ~yPIiqgpM~~vs--~---~~~LaaAVS~AGgLG~la~~~~~~e~l~~~i~~~~~l~tdkPfGVnl~~~~~~~~~~~~l~ 76 (320)
T cd04743 2 RYPIVQGPMTRVS--D---VAEFAVAVAEGGGLPFIALALMRGEQVKALLEETAELLGDKPWGVGILGFVDTELRAAQLA 76 (320)
T ss_pred CCCEECCCcCCCC--C---cHHHHHHHHhCCccccCCCCCCCHHHHHHHHHHHHHhccCCCeEEEEeccCCCcchHHHHH
Confidence 4799999997532 2 125899999998765 356788888899888773 43333333311000 00010000
Q ss_pred hhcCCCCcccccccccccccccccccchhhHHHHhhcCCCCCcHHHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEE
Q 019244 145 NRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGI 224 (344)
Q Consensus 145 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I 224 (344)
.... . ... -.....+.+ + .++++++ .++.++.. +.|++.++++.++|+|+|
T Consensus 77 vi~e--~-------------~v~--------~V~~~~G~P---~-~~~~lk~-~Gi~v~~~-v~s~~~A~~a~~~GaD~v 127 (320)
T cd04743 77 VVRA--I-------------KPT--------FALIAGGRP---D-QARALEA-IGISTYLH-VPSPGLLKQFLENGARKF 127 (320)
T ss_pred HHHh--c-------------CCc--------EEEEcCCCh---H-HHHHHHH-CCCEEEEE-eCCHHHHHHHHHcCCCEE
Confidence 0000 0 000 000001111 2 3567665 47777754 688999999999999999
Q ss_pred EEccC--CCCCCCCchhhHHHHHHHHHHcc--------CCCcEEEecCCCCHHHHHHHHHcCC--------CEEEEchHH
Q 019244 225 IVSNH--GARQLDYVPATIMALEEVVKATQ--------GRIPVFLDGGVRRGTDVFKALALGA--------SGIFIGRPV 286 (344)
Q Consensus 225 ~v~~~--gG~~~~~g~~~~~~l~~i~~~~~--------~~~~via~GGIr~g~dv~kalalGA--------d~V~ig~~~ 286 (344)
++.|+ ||+. +..+++..++++.+.+. .++|||+.|||.++..++.+++||| +.|+||+.|
T Consensus 128 VaqG~EAGGH~--G~~~t~~L~~~v~~~l~~~~~~~~~~~iPViAAGGI~dgr~~aaalaLGA~~~~~Ga~~GV~mGTrF 205 (320)
T cd04743 128 IFEGRECGGHV--GPRSSFVLWESAIDALLAANGPDKAGKIHLLFAGGIHDERSAAMVSALAAPLAERGAKVGVLMGTAY 205 (320)
T ss_pred EEecCcCcCCC--CCCCchhhHHHHHHHHHHhhcccccCCccEEEEcCCCCHHHHHHHHHcCCcccccccccEEEEccHH
Confidence 99884 6653 22345555565554431 2699999999999999999999999 799999999
Q ss_pred HHH
Q 019244 287 VYS 289 (344)
Q Consensus 287 l~~ 289 (344)
+..
T Consensus 206 l~t 208 (320)
T cd04743 206 LFT 208 (320)
T ss_pred hcc
Confidence 874
|
NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >TIGR00736 nifR3_rel_arch TIM-barrel protein, putative | Back alignment and domain information |
|---|
Probab=99.20 E-value=3e-10 Score=103.73 Aligned_cols=98 Identities=17% Similarity=0.083 Sum_probs=77.8
Q ss_pred cHHHHHHHHHhcCCcEEEEeec------CHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEe
Q 019244 187 SWKDVKWLQTITKLPILVKGVL------TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD 260 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v~------~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~ 260 (344)
..+.++.+++ .++||.||... +.+.++.+.++|+|+|.|.. ++. ..+...++.+.++++.++ .+|||++
T Consensus 123 l~~iv~av~~-~~~PVsvKiR~~~~~~~~~~~a~~l~~aGad~i~Vd~--~~~-g~~~a~~~~I~~i~~~~~-~ipIIgN 197 (231)
T TIGR00736 123 LKEFLTKMKE-LNKPIFVKIRGNCIPLDELIDALNLVDDGFDGIHVDA--MYP-GKPYADMDLLKILSEEFN-DKIIIGN 197 (231)
T ss_pred HHHHHHHHHc-CCCcEEEEeCCCCCcchHHHHHHHHHHcCCCEEEEee--CCC-CCchhhHHHHHHHHHhcC-CCcEEEE
Confidence 3456777774 48999999973 23668899999999999953 211 012257888999988773 4999999
Q ss_pred cCCCCHHHHHHHHHcCCCEEEEchHHHHH
Q 019244 261 GGVRRGTDVFKALALGASGIFIGRPVVYS 289 (344)
Q Consensus 261 GGIr~g~dv~kalalGAd~V~ig~~~l~~ 289 (344)
|||.|.+|+.+++..|||+||+||+.+.+
T Consensus 198 GgI~s~eda~e~l~~GAd~VmvgR~~l~~ 226 (231)
T TIGR00736 198 NSIDDIESAKEMLKAGADFVSVARAILKG 226 (231)
T ss_pred CCcCCHHHHHHHHHhCCCeEEEcHhhccC
Confidence 99999999999999999999999988753
|
Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins. |
| >cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.5e-09 Score=104.14 Aligned_cols=91 Identities=25% Similarity=0.258 Sum_probs=68.2
Q ss_pred HHHHHHHHhcCCcEEEEeecCHHHHHHHHHcC-CcEEEEcc-CCCCCCCCchhhHHHHHHHHH---Hc------cCCCcE
Q 019244 189 KDVKWLQTITKLPILVKGVLTAEDARIAVQAG-AAGIIVSN-HGARQLDYVPATIMALEEVVK---AT------QGRIPV 257 (344)
Q Consensus 189 ~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G-~d~I~v~~-~gG~~~~~g~~~~~~l~~i~~---~~------~~~~~v 257 (344)
+.|+++.+. + +.|.++|+.+.+.| +|.|++.. .||+. + ..++...++.+.+ .+ ..++||
T Consensus 153 ~~v~~L~~~-G-------~it~~eA~~A~~~g~aD~Ivvq~EAGGH~-g-~~~~~~Llp~v~~l~d~v~~~~~~~~~ipV 222 (418)
T cd04742 153 RILKKLLAE-G-------KITEEQAELARRVPVADDITVEADSGGHT-D-NRPLSVLLPTIIRLRDELAARYGYRRPIRV 222 (418)
T ss_pred HHHHHHHHc-C-------CCCHHHHHHHHhCCCCCEEEEcccCCCCC-C-CccHHhHHHHHHHHHHHHhhccccCCCceE
Confidence 456777664 2 34999999999999 59999974 35653 2 2344455555543 22 125999
Q ss_pred EEecCCCCHHHHHHHHHcCCCEEEEchHHHHH
Q 019244 258 FLDGGVRRGTDVFKALALGASGIFIGRPVVYS 289 (344)
Q Consensus 258 ia~GGIr~g~dv~kalalGAd~V~ig~~~l~~ 289 (344)
++.|||.++.+++.+++|||++|++||.|+-.
T Consensus 223 iAAGGI~tg~~vaAA~alGAd~V~~GT~flat 254 (418)
T cd04742 223 GAAGGIGTPEAAAAAFALGADFIVTGSINQCT 254 (418)
T ss_pred EEECCCCCHHHHHHHHHcCCcEEeeccHHHhC
Confidence 99999999999999999999999999999753
|
NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites | Back alignment and domain information |
|---|
Probab=99.10 E-value=7.5e-09 Score=94.78 Aligned_cols=105 Identities=28% Similarity=0.416 Sum_probs=79.5
Q ss_pred HHHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccC--CCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCC
Q 019244 188 WKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 265 (344)
Q Consensus 188 ~~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~--gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~ 265 (344)
.+.++++++ .+++++++ +.+.++++.+.+.|+|+|.+.+. +|.........++.+.++++.. ++||++.|||++
T Consensus 92 ~~~~~~~~~-~~i~~i~~-v~~~~~~~~~~~~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~--~~Pvi~~GGI~~ 167 (236)
T cd04730 92 AEVVERLKA-AGIKVIPT-VTSVEEARKAEAAGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAV--DIPVIAAGGIAD 167 (236)
T ss_pred HHHHHHHHH-cCCEEEEe-CCCHHHHHHHHHcCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHh--CCCEEEECCCCC
Confidence 345666665 47888765 56778899999999999998653 2322111124567788887766 699999999999
Q ss_pred HHHHHHHHHcCCCEEEEchHHHHHhhhcChH
Q 019244 266 GTDVFKALALGASGIFIGRPVVYSLAAEGEK 296 (344)
Q Consensus 266 g~dv~kalalGAd~V~ig~~~l~~~~~~G~~ 296 (344)
++|+.+++.+|||+|++|+.++....+.+..
T Consensus 168 ~~~v~~~l~~GadgV~vgS~l~~~~e~~~~~ 198 (236)
T cd04730 168 GRGIAAALALGADGVQMGTRFLATEESGASP 198 (236)
T ss_pred HHHHHHHHHcCCcEEEEchhhhcCcccCCCH
Confidence 9999999999999999999999876554443
|
NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >TIGR02814 pfaD_fam PfaD family protein | Back alignment and domain information |
|---|
Probab=99.06 E-value=8.4e-09 Score=102.10 Aligned_cols=81 Identities=23% Similarity=0.266 Sum_probs=63.3
Q ss_pred ecCHHHHHHHHHcC-CcEEEEcc-CCCCCCCCchhhHHHHHHHH---HHc------cCCCcEEEecCCCCHHHHHHHHHc
Q 019244 207 VLTAEDARIAVQAG-AAGIIVSN-HGARQLDYVPATIMALEEVV---KAT------QGRIPVFLDGGVRRGTDVFKALAL 275 (344)
Q Consensus 207 v~~~~~a~~~~~~G-~d~I~v~~-~gG~~~~~g~~~~~~l~~i~---~~~------~~~~~via~GGIr~g~dv~kalal 275 (344)
+.|+++|+.+.+.| +|.|++.. .||+. ...++...++.+. +.+ ..++||++.|||.|+.+++.+++|
T Consensus 168 ~it~eEA~~a~~~g~aD~Ivve~EAGGHt--g~~~~~~Llp~i~~lrd~v~~~~~y~~~VpViAAGGI~t~~~vaAAlaL 245 (444)
T TIGR02814 168 RITREEAELARRVPVADDICVEADSGGHT--DNRPLVVLLPAIIRLRDTLMRRYGYRKPIRVGAAGGIGTPEAAAAAFML 245 (444)
T ss_pred CCCHHHHHHHHhCCCCcEEEEeccCCCCC--CCCcHHHHHHHHHHHHHHHhhcccCCCCceEEEeCCCCCHHHHHHHHHc
Confidence 34999999999999 49998863 45653 2235556666664 333 126899999999999999999999
Q ss_pred CCCEEEEchHHHHH
Q 019244 276 GASGIFIGRPVVYS 289 (344)
Q Consensus 276 GAd~V~ig~~~l~~ 289 (344)
||++|++||.|+-.
T Consensus 246 GAdgV~~GT~flat 259 (444)
T TIGR02814 246 GADFIVTGSVNQCT 259 (444)
T ss_pred CCcEEEeccHHHhC
Confidence 99999999999864
|
The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se. |
| >PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA | Back alignment and domain information |
|---|
Probab=99.06 E-value=9.1e-10 Score=105.27 Aligned_cols=141 Identities=28% Similarity=0.376 Sum_probs=94.3
Q ss_pred cHHHHHHHHHhcCCcEEEEeec--------CHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEE
Q 019244 187 SWKDVKWLQTITKLPILVKGVL--------TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 258 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v~--------~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~vi 258 (344)
..+.++.+++.+++||.+|... +.+-++.+.++|+++|+|.+.-..+...+++.++.+.++++.+ ++|||
T Consensus 110 ~~~iv~~~~~~~~~pvsvKiR~g~~~~~~~~~~~~~~l~~~G~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~--~ipvi 187 (309)
T PF01207_consen 110 LAEIVKAVRKAVPIPVSVKIRLGWDDSPEETIEFARILEDAGVSAITVHGRTRKQRYKGPADWEAIAEIKEAL--PIPVI 187 (309)
T ss_dssp HHHHHHHHHHH-SSEEEEEEESECT--CHHHHHHHHHHHHTT--EEEEECS-TTCCCTS---HHHHHHCHHC---TSEEE
T ss_pred hhHHHHhhhcccccceEEecccccccchhHHHHHHHHhhhcccceEEEecCchhhcCCcccchHHHHHHhhcc--cceeE
Confidence 3457899999999999999862 2345788999999999995443335556788999999999887 59999
Q ss_pred EecCCCCHHHHHHHHHc-CCCEEEEchH-----HHHHh---hhcCh----HHHHHHHHHHHHHHHHHHHHhC-CCCHhhh
Q 019244 259 LDGGVRRGTDVFKALAL-GASGIFIGRP-----VVYSL---AAEGE----KGVRRVLEMLREEFELAMALSG-CRSLKEI 324 (344)
Q Consensus 259 a~GGIr~g~dv~kalal-GAd~V~ig~~-----~l~~~---~~~G~----~~v~~~l~~l~~el~~~m~~~G-~~~i~~l 324 (344)
++|||.|..|+.+.+.. |+|+||+||. +++.- ...|. ..+.+.++.+.+.+.......| ...+..+
T Consensus 188 ~NGdI~s~~d~~~~~~~tg~dgvMigRgal~nP~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (309)
T PF01207_consen 188 ANGDIFSPEDAERMLEQTGADGVMIGRGALGNPWLFREIDQIKEGEPEPFPPIAERLDIILRHYDYMEEFYGEEKALRQM 267 (309)
T ss_dssp EESS--SHHHHHHHCCCH-SSEEEESHHHCC-CCHHCHHHCHHHHTT--S--HHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred EcCccCCHHHHHHHHHhcCCcEEEEchhhhhcCHHhhhhhhhccCCCCCCCchhHHHHHHHHHHHHHHHHhccCchHHHH
Confidence 99999999999999985 9999999995 45531 11111 1145566777777777777665 3456666
Q ss_pred cccce
Q 019244 325 TRDHI 329 (344)
Q Consensus 325 ~~~~l 329 (344)
++...
T Consensus 268 ~k~~~ 272 (309)
T PF01207_consen 268 RKHLK 272 (309)
T ss_dssp HTTCC
T ss_pred HHHHH
Confidence 55543
|
Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y. |
| >KOG1799 consensus Dihydropyrimidine dehydrogenase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.1e-09 Score=99.86 Aligned_cols=135 Identities=19% Similarity=0.288 Sum_probs=104.0
Q ss_pred cHHHHHHHHHhcCCcEEEEeecCH----HHHHHHHHcCCcEEEEccC------------------------CCCCCCC-c
Q 019244 187 SWKDVKWLQTITKLPILVKGVLTA----EDARIAVQAGAAGIIVSNH------------------------GARQLDY-V 237 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v~~~----~~a~~~~~~G~d~I~v~~~------------------------gG~~~~~-g 237 (344)
.-+...||+....+|++-|...+. +.++.+...|+.+|...|. ||..... .
T Consensus 261 ~~EvC~Wi~A~~~Ip~~~kmTPNitd~revar~~~~~g~~GiaA~NTi~SvM~i~~~~~~P~~~~~~~sT~GG~S~~AvR 340 (471)
T KOG1799|consen 261 DCEVCGWINAKATIPMVSKMTPNITDKREVARSVNPVGCEGIAAINTIMSVMGIDMKTLRPEPCVEGYSTPGGYSYKAVR 340 (471)
T ss_pred hHHHhhhhhhccccccccccCCCcccccccchhcCcccccchhhHhHHHHHhcccccccCCCcccccccCCCCccccccc
Confidence 445689999999999999987543 5577788889988876542 1111111 1
Q ss_pred hhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhC
Q 019244 238 PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSG 317 (344)
Q Consensus 238 ~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G 317 (344)
|-.+..+..|++.+. ..|+.+.|||.++.|.+..|.+|++.|++++..+. +|.. .++.+..||+..|.+.|
T Consensus 341 PIAl~~V~~IA~~m~-~F~l~~~GGvEt~~~~~~Fil~Gs~~vQVCt~V~~----~~~~----~V~~~Ca~LK~~m~~~~ 411 (471)
T KOG1799|consen 341 PIALAKVMNIAKMMK-EFSLSGIGGVETGYDAAEFILLGSNTVQVCTGVMM----HGYG----HVKTLCAELKDFMKQHN 411 (471)
T ss_pred hHHHHHHHHHHHHhh-cCccccccCcccccchhhHhhcCCcHhhhhhHHHh----cCcc----hHHHHHHHHHHHHHHcC
Confidence 234455666666654 79999999999999999999999999999998864 4553 56789999999999999
Q ss_pred CCCHhhhccccee
Q 019244 318 CRSLKEITRDHIV 330 (344)
Q Consensus 318 ~~~i~~l~~~~l~ 330 (344)
..+|++++++.|.
T Consensus 412 ~~ti~~~~G~SL~ 424 (471)
T KOG1799|consen 412 FSTIEEFRGHSLQ 424 (471)
T ss_pred chhhhhccCcchh
Confidence 9999999988653
|
|
| >PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.2e-07 Score=85.41 Aligned_cols=166 Identities=19% Similarity=0.226 Sum_probs=102.2
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEeccCCccccccHHHHHhhcCCCCcccccccccccccccccccchhhHHHHhhcCCCCC
Q 019244 107 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 186 (344)
Q Consensus 107 ~d~~~~~~~i~~a~~ag~~~l~~tvd~~~~g~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (344)
.+.+...+.++.+.++|++.+.+|.+.+.--..-+.++..+.-+.-++...+ +..+........+.+..++ +.+
T Consensus 19 ~~~~~~~~~~~a~~~gGi~~iEvt~~~~~~~~~i~~l~~~~~~~~~iGaGTV--~~~~~~~~a~~aGA~fivs----p~~ 92 (206)
T PRK09140 19 ITPDEALAHVGALIEAGFRAIEIPLNSPDPFDSIAALVKALGDRALIGAGTV--LSPEQVDRLADAGGRLIVT----PNT 92 (206)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHcCCCcEEeEEec--CCHHHHHHHHHcCCCEEEC----CCC
Confidence 4667777788888889999999988877432222333333321111111111 1000000001111111122 223
Q ss_pred cHHHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCH
Q 019244 187 SWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 266 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g 266 (344)
+.+.++.. ...+.|++.. +.|++++..+.+.|+|+|.++-.. ..| ++.+..+...++.++|+++.||| +.
T Consensus 93 ~~~v~~~~-~~~~~~~~~G-~~t~~E~~~A~~~Gad~vk~Fpa~----~~G---~~~l~~l~~~~~~~ipvvaiGGI-~~ 162 (206)
T PRK09140 93 DPEVIRRA-VALGMVVMPG-VATPTEAFAALRAGAQALKLFPAS----QLG---PAGIKALRAVLPPDVPVFAVGGV-TP 162 (206)
T ss_pred CHHHHHHH-HHCCCcEEcc-cCCHHHHHHHHHcCCCEEEECCCC----CCC---HHHHHHHHhhcCCCCeEEEECCC-CH
Confidence 33444444 4457777765 899999999999999999984321 122 45566665555336999999999 78
Q ss_pred HHHHHHHHcCCCEEEEchHHHH
Q 019244 267 TDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 267 ~dv~kalalGAd~V~ig~~~l~ 288 (344)
+++...+++||++|.+++.++.
T Consensus 163 ~n~~~~~~aGa~~vav~s~l~~ 184 (206)
T PRK09140 163 ENLAPYLAAGAAGFGLGSALYR 184 (206)
T ss_pred HHHHHHHHCCCeEEEEehHhcc
Confidence 9999999999999999999875
|
|
| >PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.1e-07 Score=86.10 Aligned_cols=176 Identities=19% Similarity=0.217 Sum_probs=111.1
Q ss_pred HHHcCCccc--cCCHHHHHHHHHHHHHcCCcEEEeccCCccccccHHHHHhhcCC-C-Ccccccccccccccccccccch
Q 019244 97 ASAAGTIMV--YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTL-P-PFLTLKNFQGLDLGKMDEANDS 172 (344)
Q Consensus 97 A~~~g~~~~--~~d~~~~~~~i~~a~~ag~~~l~~tvd~~~~g~r~~~~~~~~~~-~-~g~~~~~~~~~~~~~~~~~~~~ 172 (344)
-.+.++.-+ ..+.+....+++.+.++|++.+.+|.++|.--...+.++..+.- | .-++...+ +..+........
T Consensus 10 l~~~~vi~vir~~~~~~a~~~~~al~~~Gi~~iEit~~~~~a~~~i~~l~~~~~~~p~~~vGaGTV--~~~~~~~~a~~a 87 (213)
T PRK06552 10 LKANGVVAVVRGESKEEALKISLAVIKGGIKAIEVTYTNPFASEVIKELVELYKDDPEVLIGAGTV--LDAVTARLAILA 87 (213)
T ss_pred HHHCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCccHHHHHHHHHHHcCCCCCeEEeeeeC--CCHHHHHHHHHc
Confidence 344444332 34677777888888999999999999988644334445444311 1 01111111 111111111112
Q ss_pred hhHHHHhhcCCCCCcHHHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHcc
Q 019244 173 GLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ 252 (344)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~ 252 (344)
+.+..++ +.++-+.+++-++ .++|++- ++.|+.++..+.++|+|.|.++-.+ ..| ...+..++..+
T Consensus 88 GA~Fivs----P~~~~~v~~~~~~-~~i~~iP-G~~T~~E~~~A~~~Gad~vklFPa~----~~G---~~~ik~l~~~~- 153 (213)
T PRK06552 88 GAQFIVS----PSFNRETAKICNL-YQIPYLP-GCMTVTEIVTALEAGSEIVKLFPGS----TLG---PSFIKAIKGPL- 153 (213)
T ss_pred CCCEEEC----CCCCHHHHHHHHH-cCCCEEC-CcCCHHHHHHHHHcCCCEEEECCcc----cCC---HHHHHHHhhhC-
Confidence 2222333 2344455666554 5888774 6899999999999999999995311 123 34455555555
Q ss_pred CCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHH
Q 019244 253 GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 289 (344)
Q Consensus 253 ~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~ 289 (344)
.++|+++.|||. .+++..++++||+++.+|+.++..
T Consensus 154 p~ip~~atGGI~-~~N~~~~l~aGa~~vavgs~l~~~ 189 (213)
T PRK06552 154 PQVNVMVTGGVN-LDNVKDWFAAGADAVGIGGELNKL 189 (213)
T ss_pred CCCEEEEECCCC-HHHHHHHHHCCCcEEEEchHHhCc
Confidence 369999999998 799999999999999999999643
|
|
| >cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.3e-07 Score=90.92 Aligned_cols=102 Identities=24% Similarity=0.235 Sum_probs=78.6
Q ss_pred CCcHHHHHHHHHhc--CCcEEEEeec--------CHHH----HHHHHHcCCcEEEEccCCCCCCCC--------chhhHH
Q 019244 185 SLSWKDVKWLQTIT--KLPILVKGVL--------TAED----ARIAVQAGAAGIIVSNHGARQLDY--------VPATIM 242 (344)
Q Consensus 185 ~~~~~~i~~i~~~~--~~PvivK~v~--------~~~~----a~~~~~~G~d~I~v~~~gG~~~~~--------g~~~~~ 242 (344)
.+..+.++.+|+.+ +.||.+|... +.++ ++.+.++|+|+|.+++....+... ....++
T Consensus 192 r~~~eii~avr~~~g~d~~i~vris~~~~~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~ 271 (327)
T cd02803 192 RFLLEIVAAVREAVGPDFPVGVRLSADDFVPGGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLE 271 (327)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEechhccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHH
Confidence 34567899999988 6899999862 3444 678889999999998643221111 122345
Q ss_pred HHHHHHHHccCCCcEEEecCCCCHHHHHHHHHc-CCCEEEEchHHHH
Q 019244 243 ALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL-GASGIFIGRPVVY 288 (344)
Q Consensus 243 ~l~~i~~~~~~~~~via~GGIr~g~dv~kalal-GAd~V~ig~~~l~ 288 (344)
.+..+++.+ ++||+++|||++..++.++++. |||+|++||+++.
T Consensus 272 ~~~~ir~~~--~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~igR~~la 316 (327)
T cd02803 272 LAEKIKKAV--KIPVIAVGGIRDPEVAEEILAEGKADLVALGRALLA 316 (327)
T ss_pred HHHHHHHHC--CCCEEEeCCCCCHHHHHHHHHCCCCCeeeecHHHHh
Confidence 667777766 7999999999999999999998 7999999999985
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.3e-08 Score=95.07 Aligned_cols=97 Identities=29% Similarity=0.406 Sum_probs=82.1
Q ss_pred HHHHHHHHhcCCcEEEEee------cCHHHHHHHHHcCCcEEEEccCCCCC----CCCchhhHHHHHHHHHHccCCCcEE
Q 019244 189 KDVKWLQTITKLPILVKGV------LTAEDARIAVQAGAAGIIVSNHGARQ----LDYVPATIMALEEVVKATQGRIPVF 258 (344)
Q Consensus 189 ~~i~~i~~~~~~PvivK~v------~~~~~a~~~~~~G~d~I~v~~~gG~~----~~~g~~~~~~l~~i~~~~~~~~~vi 258 (344)
+.|+.+++.++.||.+|+. -|.+.++.+.++|++.++| ||.+- ...++..++.+..+++.+++ +|||
T Consensus 131 e~V~~v~~~l~~pVs~KIRI~~d~~kTvd~ak~~e~aG~~~ltV--HGRtr~~kg~~~~pad~~~i~~v~~~~~~-ipvi 207 (358)
T KOG2335|consen 131 EMVSAVRANLNVPVSVKIRIFVDLEKTVDYAKMLEDAGVSLLTV--HGRTREQKGLKTGPADWEAIKAVRENVPD-IPVI 207 (358)
T ss_pred HHHHHHHhhcCCCeEEEEEecCcHHHHHHHHHHHHhCCCcEEEE--ecccHHhcCCCCCCcCHHHHHHHHHhCcC-CcEE
Confidence 4688889999999999986 3567799999999999999 55431 22567789999999998854 9999
Q ss_pred EecCCCCHHHHHHHHH-cCCCEEEEchHHHH
Q 019244 259 LDGGVRRGTDVFKALA-LGASGIFIGRPVVY 288 (344)
Q Consensus 259 a~GGIr~g~dv~kala-lGAd~V~ig~~~l~ 288 (344)
+.|+|.+..|+-.++. .|||+||.|+..|+
T Consensus 208 aNGnI~~~~d~~~~~~~tG~dGVM~arglL~ 238 (358)
T KOG2335|consen 208 ANGNILSLEDVERCLKYTGADGVMSARGLLY 238 (358)
T ss_pred eeCCcCcHHHHHHHHHHhCCceEEecchhhc
Confidence 9999999999999999 99999999996543
|
|
| >cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.7e-08 Score=89.51 Aligned_cols=99 Identities=23% Similarity=0.259 Sum_probs=78.6
Q ss_pred cHHHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCC--CCCchhhHHHHHHHHHHccCCCcEEEecCCC
Q 019244 187 SWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ--LDYVPATIMALEEVVKATQGRIPVFLDGGVR 264 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~--~~~g~~~~~~l~~i~~~~~~~~~via~GGIr 264 (344)
..+.++++++..++|+++ .+.+++++..+.++|+|+|.+.++|-+. .....+.++.+.++++.+ ++||++.|||+
T Consensus 111 ~~~~i~~~~~~g~~~iiv-~v~t~~ea~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~--~ipvia~GGI~ 187 (219)
T cd04729 111 LAELIKRIHEEYNCLLMA-DISTLEEALNAAKLGFDIIGTTLSGYTEETAKTEDPDFELLKELRKAL--GIPVIAEGRIN 187 (219)
T ss_pred HHHHHHHHHHHhCCeEEE-ECCCHHHHHHHHHcCCCEEEccCccccccccCCCCCCHHHHHHHHHhc--CCCEEEeCCCC
Confidence 345677887765688776 4678999999999999999775554211 112235678888888776 69999999999
Q ss_pred CHHHHHHHHHcCCCEEEEchHHHH
Q 019244 265 RGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 265 ~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
+++|+.+++++|||+|++|+.++.
T Consensus 188 ~~~~~~~~l~~GadgV~vGsal~~ 211 (219)
T cd04729 188 SPEQAAKALELGADAVVVGSAITR 211 (219)
T ss_pred CHHHHHHHHHCCCCEEEEchHHhC
Confidence 999999999999999999999875
|
This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates. |
| >PRK00507 deoxyribose-phosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.4e-08 Score=92.31 Aligned_cols=92 Identities=23% Similarity=0.224 Sum_probs=71.1
Q ss_pred HHHHHHHHhcCCcEEEEee-----cCHHH----HHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEE
Q 019244 189 KDVKWLQTITKLPILVKGV-----LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 259 (344)
Q Consensus 189 ~~i~~i~~~~~~PvivK~v-----~~~~~----a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via 259 (344)
+++..+++.. .|+.+|.+ ++.++ ++.+.++|+|+|..|+.- ..+..+.+.+..+++..+++++|.+
T Consensus 110 ~ei~~v~~~~-~~~~lKvIlEt~~L~~e~i~~a~~~~~~agadfIKTsTG~----~~~gat~~~v~~m~~~~~~~~~IKa 184 (221)
T PRK00507 110 ADIRAVVEAA-GGAVLKVIIETCLLTDEEKVKACEIAKEAGADFVKTSTGF----STGGATVEDVKLMRETVGPRVGVKA 184 (221)
T ss_pred HHHHHHHHhc-CCceEEEEeecCcCCHHHHHHHHHHHHHhCCCEEEcCCCC----CCCCCCHHHHHHHHHHhCCCceEEe
Confidence 4677777754 47889986 45444 456889999999887531 1233667777777777777899999
Q ss_pred ecCCCCHHHHHHHHHcCCCEEEEchH
Q 019244 260 DGGVRRGTDVFKALALGASGIFIGRP 285 (344)
Q Consensus 260 ~GGIr~g~dv~kalalGAd~V~ig~~ 285 (344)
+|||+|..|+.+.+.+||+.++..+.
T Consensus 185 sGGIrt~~~a~~~i~aGA~riGtS~~ 210 (221)
T PRK00507 185 SGGIRTLEDALAMIEAGATRLGTSAG 210 (221)
T ss_pred eCCcCCHHHHHHHHHcCcceEccCcH
Confidence 99999999999999999999987654
|
|
| >PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: |
Back alignment and domain information |
|---|
Probab=98.82 E-value=6.6e-08 Score=84.77 Aligned_cols=96 Identities=21% Similarity=0.267 Sum_probs=73.0
Q ss_pred HHHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCC-chhhHHHHHHHHHHccCCCcEEEecCCCCH
Q 019244 188 WKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDY-VPATIMALEEVVKATQGRIPVFLDGGVRRG 266 (344)
Q Consensus 188 ~~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~-g~~~~~~l~~i~~~~~~~~~via~GGIr~g 266 (344)
.+.++++++.+ -+++--+.|.|+++.+.++|+|.|-....|.+.... ..|.++.+.++.+. .+|||+.|+|.++
T Consensus 82 ~~li~~i~~~~--~l~MADist~ee~~~A~~~G~D~I~TTLsGYT~~t~~~~pD~~lv~~l~~~---~~pvIaEGri~tp 156 (192)
T PF04131_consen 82 EELIREIKEKY--QLVMADISTLEEAINAAELGFDIIGTTLSGYTPYTKGDGPDFELVRELVQA---DVPVIAEGRIHTP 156 (192)
T ss_dssp HHHHHHHHHCT--SEEEEE-SSHHHHHHHHHTT-SEEE-TTTTSSTTSTTSSHHHHHHHHHHHT---TSEEEEESS--SH
T ss_pred HHHHHHHHHhC--cEEeeecCCHHHHHHHHHcCCCEEEcccccCCCCCCCCCCCHHHHHHHHhC---CCcEeecCCCCCH
Confidence 45699999987 566677899999999999999999776666543211 45788889888763 7999999999999
Q ss_pred HHHHHHHHcCCCEEEEchHHHH
Q 019244 267 TDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 267 ~dv~kalalGAd~V~ig~~~l~ 288 (344)
+++.++|.+||++|.+|+++-.
T Consensus 157 e~a~~al~~GA~aVVVGsAITr 178 (192)
T PF04131_consen 157 EQAAKALELGAHAVVVGSAITR 178 (192)
T ss_dssp HHHHHHHHTT-SEEEE-HHHH-
T ss_pred HHHHHHHhcCCeEEEECcccCC
Confidence 9999999999999999998754
|
; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B. |
| >KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.82 E-value=6.6e-08 Score=102.33 Aligned_cols=243 Identities=21% Similarity=0.193 Sum_probs=153.0
Q ss_pred eeecccccccccCChhhHHHHHHHHHcCCcc-------------ccCCH-HHHHHHHHHHHHcCCcEEEeccCCcccccc
Q 019244 74 IMIAPTAMQKMAHPEGEYATARAASAAGTIM-------------VYKDR-NVVAQLVRRAERAGFKAIALTVDTPRLGRR 139 (344)
Q Consensus 74 i~iapm~~~~~~~~~~~~~lA~aA~~~g~~~-------------~~~d~-~~~~~~i~~a~~ag~~~l~~tvd~~~~g~r 139 (344)
|.-.+|+++..+. +....||.|..+.|.-- ...|. +...+-|++...+.|.. | ...+.+-
T Consensus 957 FcTGaMS~GsIS~-EtH~tlAIAMNRlGgKSNtGEGGEdp~R~~~l~d~~d~~rSAIKQVASgRFGV---T--s~yL~nA 1030 (2142)
T KOG0399|consen 957 FCTGAMSYGSISM-ETHTTLAIAMNRLGGKSNTGEGGEDPERSKPLADGVDTMRSAIKQVASGRFGV---T--SYYLSNA 1030 (2142)
T ss_pred Hhcccccccccch-hhHHHHHHHHHhhcCcCCCCCCCCChhhcccccccchHHHHHHHHHhcccccc---c--hhhccCc
Confidence 4567899988775 46778999988887654 22333 34455577766554542 1 2222222
Q ss_pred H-HHHHhhcCCCCccccccccccccccccc----c-cchhhHHHHhhcCCCCC-cHHHHHHHHH----hc-CCcEEEEee
Q 019244 140 E-ADIKNRFTLPPFLTLKNFQGLDLGKMDE----A-NDSGLAAYVAGQIDRSL-SWKDVKWLQT----IT-KLPILVKGV 207 (344)
Q Consensus 140 ~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~-~~~~i~~i~~----~~-~~PvivK~v 207 (344)
. -.++ +.+|..+...+.++...+.. . +..+.-.+++|.++.+. +.+++.++.= .- .-.|.||.|
T Consensus 1031 DeLqIK----mAQGAKPGEGGeLPghKVs~dIA~tR~St~gVgLISPPPHHDIYSIEDLaQLIyDLk~aNP~ArVSVKLV 1106 (2142)
T KOG0399|consen 1031 DELQIK----MAQGAKPGEGGELPGHKVSADIAKTRHSTAGVGLISPPPHHDIYSIEDLAQLIYDLKCANPRARVSVKLV 1106 (2142)
T ss_pred hhhhhH----HhcCCCCCCCCCCCcchhhHHHHHhccCCCCCCcCCCCCccccccHHHHHHHHHHhhccCCCceeEEEEE
Confidence 1 1122 34455555555555443321 1 11122345666666654 7777666542 22 245889987
Q ss_pred cCH---HHHHHHHHcCCcEEEEccC-CCCCCC-------CchhhHHHHHHHH-----HHccCCCcEEEecCCCCHHHHHH
Q 019244 208 LTA---EDARIAVQAGAAGIIVSNH-GARQLD-------YVPATIMALEEVV-----KATQGRIPVFLDGGVRRGTDVFK 271 (344)
Q Consensus 208 ~~~---~~a~~~~~~G~d~I~v~~~-gG~~~~-------~g~~~~~~l~~i~-----~~~~~~~~via~GGIr~g~dv~k 271 (344)
.-. -.|--..++.||.|.|||| ||+... .|.|----|.+-. .-+++++-|=.||++|||.||+-
T Consensus 1107 SEaGVGiVASGVaK~~ADhI~vSGhDGGTGAS~wt~IK~AGlPWELGlAEThQtLv~NdLR~rvVlqtDGqlrtG~DV~i 1186 (2142)
T KOG0399|consen 1107 SEAGVGIVASGVAKGNADHILVSGHDGGTGASRWTGIKHAGLPWELGLAETHQTLVLNDLRGRVVLQTDGQLRTGRDVAI 1186 (2142)
T ss_pred ecccceeeeeccccccCceEEEeccCCCcCcccccccccCCCChhhcchhhhhHHhhccccccEEEEecCccccchHHHH
Confidence 422 1234456778999999998 555311 1211100122222 23456788889999999999999
Q ss_pred HHHcCCCEEEEchHHHHHhhhc--------------------------C-hHHHHHHHHHHHHHHHHHHHHhCCCCHhhh
Q 019244 272 ALALGASGIFIGRPVVYSLAAE--------------------------G-EKGVRRVLEMLREEFELAMALSGCRSLKEI 324 (344)
Q Consensus 272 alalGAd~V~ig~~~l~~~~~~--------------------------G-~~~v~~~l~~l~~el~~~m~~~G~~~i~~l 324 (344)
|-+|||+-.++++.-|.+++|- | ++.|.+++-.+.+|++.+|..+|.++++|+
T Consensus 1187 AallGAeefgf~T~plIalGCiMmRkCH~NtCpVGiAtQdp~LRakF~G~PehvVNff~yvaEEvR~imakLGfrtldem 1266 (2142)
T KOG0399|consen 1187 AALLGAEEFGFSTAPLIALGCIMMRKCHLNTCPVGIATQDPELRAKFPGQPEHVVNFFFYVAEEVRGIMAKLGFRTLDEM 1266 (2142)
T ss_pred HHHhCchhhcccccHHHHHhhHHHHHhccCCCCcccccCCHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHHhCcchHHHH
Confidence 9999999999999877776641 3 356889999999999999999999999998
Q ss_pred cc
Q 019244 325 TR 326 (344)
Q Consensus 325 ~~ 326 (344)
-+
T Consensus 1267 vG 1268 (2142)
T KOG0399|consen 1267 VG 1268 (2142)
T ss_pred hc
Confidence 54
|
|
| >PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=7.3e-08 Score=87.65 Aligned_cols=97 Identities=23% Similarity=0.261 Sum_probs=76.4
Q ss_pred HHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCC--CCchhhHHHHHHHHHHccCCCcEEEecCCCCH
Q 019244 189 KDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQL--DYVPATIMALEEVVKATQGRIPVFLDGGVRRG 266 (344)
Q Consensus 189 ~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~--~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g 266 (344)
+.++.+++..++|+++ .+.+.++++.+.++|+|.|.++++|-+.. ....+..+.+.++++.+ ++||++.|||+++
T Consensus 109 ~~i~~~~~~~~i~vi~-~v~t~ee~~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~--~iPvia~GGI~t~ 185 (221)
T PRK01130 109 ELVKRIKEYPGQLLMA-DCSTLEEGLAAQKLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAV--GCPVIAEGRINTP 185 (221)
T ss_pred HHHHHHHhCCCCeEEE-eCCCHHHHHHHHHcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhC--CCCEEEECCCCCH
Confidence 4577776644677764 56789999999999999998765432211 22334567888888776 6999999999999
Q ss_pred HHHHHHHHcCCCEEEEchHHHH
Q 019244 267 TDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 267 ~dv~kalalGAd~V~ig~~~l~ 288 (344)
+|+.+++++|||+|++|+.++.
T Consensus 186 ~~~~~~l~~GadgV~iGsai~~ 207 (221)
T PRK01130 186 EQAKKALELGAHAVVVGGAITR 207 (221)
T ss_pred HHHHHHHHCCCCEEEEchHhcC
Confidence 9999999999999999999764
|
|
| >COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.2e-08 Score=89.85 Aligned_cols=172 Identities=19% Similarity=0.225 Sum_probs=107.3
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEeccCCccccccHH----HHH--hhcCCCCcccccccccccccccccccchhhHHHH--
Q 019244 107 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREA----DIK--NRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYV-- 178 (344)
Q Consensus 107 ~d~~~~~~~i~~a~~ag~~~l~~tvd~~~~g~r~~----~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-- 178 (344)
..++.+.+++++|++.++.++++++....+....- ..+ .-.+||.|.........+.. ....++.+|.-
T Consensus 21 ~T~~~I~~l~~eA~~~~f~avCV~P~~V~~A~~~l~g~~~~~v~tVigFP~G~~~t~~K~~Ea~---~ai~~GAdEiDmV 97 (228)
T COG0274 21 ATEEDIARLCAEAKEYGFAAVCVNPSYVPLAKEALKGSTVVRVCTVIGFPLGANTTAVKAAEAR---EAIENGADEIDMV 97 (228)
T ss_pred CCHHHHHHHHHHHHhhCceEEEECcchHHHHHHHhccCCCeEEEEecCCCCCCChHHHHHHHHH---HHHHcCCCeeeee
Confidence 45677788999999999998888865443322110 000 01235666544322111100 00111222210
Q ss_pred hh-----cCCCCCcHHHHHHHHHhcCCcEEEEee-----cCHHH----HHHHHHcCCcEEEEccCCCCCCCCchhhHHHH
Q 019244 179 AG-----QIDRSLSWKDVKWLQTITKLPILVKGV-----LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMAL 244 (344)
Q Consensus 179 ~~-----~~~~~~~~~~i~~i~~~~~~PvivK~v-----~~~~~----a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l 244 (344)
.+ .++.+...++|+.+++..+-++.+|.+ ++.++ .+.+.++|+|+|..|.... .+..|.+.+
T Consensus 98 inig~~k~g~~~~V~~eI~~v~~a~~~~~~lKVIlEt~~Lt~ee~~~A~~i~~~aGAdFVKTSTGf~----~~gAT~edv 173 (228)
T COG0274 98 INIGALKSGNWEAVEREIRAVVEACADAVVLKVILETGLLTDEEKRKACEIAIEAGADFVKTSTGFS----AGGATVEDV 173 (228)
T ss_pred eeHHHHhcCCHHHHHHHHHHHHHHhCCCceEEEEEeccccCHHHHHHHHHHHHHhCCCEEEcCCCCC----CCCCCHHHH
Confidence 00 122222345788899988756788876 34433 4568899999999986321 334677777
Q ss_pred HHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchH
Q 019244 245 EEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 285 (344)
Q Consensus 245 ~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~ 285 (344)
.-+++.+++++.|-++|||||.+|+.+.+.+||.-++..+.
T Consensus 174 ~lM~~~vg~~vgvKaSGGIrt~eda~~~i~aga~RiGtSs~ 214 (228)
T COG0274 174 KLMKETVGGRVGVKASGGIRTAEDAKAMIEAGATRIGTSSG 214 (228)
T ss_pred HHHHHHhccCceeeccCCcCCHHHHHHHHHHhHHHhccccH
Confidence 76777777799999999999999999999999877766653
|
|
| >cd04732 HisA HisA | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.6e-07 Score=83.58 Aligned_cols=103 Identities=22% Similarity=0.405 Sum_probs=79.7
Q ss_pred CCcHHHHHHHHHhcCCcEEEEe-ecCHHHHHHHHHcCCcEEEEccC---------------CC-----------------
Q 019244 185 SLSWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSNH---------------GA----------------- 231 (344)
Q Consensus 185 ~~~~~~i~~i~~~~~~PvivK~-v~~~~~a~~~~~~G~d~I~v~~~---------------gG----------------- 231 (344)
..+++.++++++.+++|+++.+ +.++++++.+.+.|+|.|++... |.
T Consensus 59 ~~~~~~i~~i~~~~~~pv~~~GgI~~~e~~~~~~~~Gad~vvigs~~l~dp~~~~~i~~~~g~~~i~~sid~~~~~~~~~ 138 (234)
T cd04732 59 PVNLELIEEIVKAVGIPVQVGGGIRSLEDIERLLDLGVSRVIIGTAAVKNPELVKELLKEYGGERIVVGLDAKDGKVATK 138 (234)
T ss_pred CCCHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcCCCEEEECchHHhChHHHHHHHHHcCCceEEEEEEeeCCEEEEC
Confidence 3467889999998899999876 47899999999999999887521 11
Q ss_pred --C---C--------------C----------C--CchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEE
Q 019244 232 --R---Q--------------L----------D--YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGI 280 (344)
Q Consensus 232 --~---~--------------~----------~--~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V 280 (344)
. . . + ...+.++.+.++.+.. ++||++.|||++.+|+.+++..||++|
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~ga~~iii~~~~~~g~~~g~~~~~i~~i~~~~--~ipvi~~GGi~~~~di~~~~~~Ga~gv 216 (234)
T cd04732 139 GWLETSEVSLEELAKRFEELGVKAIIYTDISRDGTLSGPNFELYKELAAAT--GIPVIASGGVSSLDDIKALKELGVAGV 216 (234)
T ss_pred CCeeecCCCHHHHHHHHHHcCCCEEEEEeecCCCccCCCCHHHHHHHHHhc--CCCEEEecCCCCHHHHHHHHHCCCCEE
Confidence 0 0 0 0 0113456677776655 799999999999999999999999999
Q ss_pred EEchHHHHH
Q 019244 281 FIGRPVVYS 289 (344)
Q Consensus 281 ~ig~~~l~~ 289 (344)
++|+.++.+
T Consensus 217 ~vg~~~~~~ 225 (234)
T cd04732 217 IVGKALYEG 225 (234)
T ss_pred EEeHHHHcC
Confidence 999999864
|
Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. |
| >PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=98.64 E-value=9.5e-07 Score=82.50 Aligned_cols=86 Identities=22% Similarity=0.303 Sum_probs=66.3
Q ss_pred CCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCC
Q 019244 199 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGAS 278 (344)
Q Consensus 199 ~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd 278 (344)
++-+++ .+.+.++++++.++|+|.|-+.+ +.+..-.+.++...++.+.+++..++|+-|||.+++|+.+++.+|||
T Consensus 160 Gl~~lv-evh~~~E~~~A~~~gadiIgin~---rdl~~~~~d~~~~~~l~~~~p~~~~vIaegGI~t~ed~~~~~~~Gad 235 (260)
T PRK00278 160 GLDVLV-EVHDEEELERALKLGAPLIGINN---RNLKTFEVDLETTERLAPLIPSDRLVVSESGIFTPEDLKRLAKAGAD 235 (260)
T ss_pred CCeEEE-EeCCHHHHHHHHHcCCCEEEECC---CCcccccCCHHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHHcCCC
Confidence 544443 46788999999999999988743 32222233456666666666545799999999999999999999999
Q ss_pred EEEEchHHHH
Q 019244 279 GIFIGRPVVY 288 (344)
Q Consensus 279 ~V~ig~~~l~ 288 (344)
+|.+|+.++.
T Consensus 236 ~vlVGsaI~~ 245 (260)
T PRK00278 236 AVLVGESLMR 245 (260)
T ss_pred EEEECHHHcC
Confidence 9999999986
|
|
| >cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa | Back alignment and domain information |
|---|
Probab=98.64 E-value=4.8e-07 Score=84.01 Aligned_cols=98 Identities=24% Similarity=0.331 Sum_probs=80.4
Q ss_pred HHHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCC------------------------C------Cc
Q 019244 188 WKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQL------------------------D------YV 237 (344)
Q Consensus 188 ~~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~------------------------~------~g 237 (344)
.+.+..++..++.|++ -.+.|.+++..+.+.|+|.|-....|++.. . ..
T Consensus 101 ~~~~~~iK~~~~~l~M-AD~stleEal~a~~~Gad~I~TTl~gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~ 179 (283)
T cd04727 101 DEEHHIDKHKFKVPFV-CGARNLGEALRRISEGAAMIRTKGEAGTGNVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEI 179 (283)
T ss_pred HHHHHHHHHHcCCcEE-ccCCCHHHHHHHHHCCCCEEEecCCCCCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhccc
Confidence 4568888888877766 468999999999999999998877666532 0 01
Q ss_pred hhhHHHHHHHHHHccCCCcEE--EecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 238 PATIMALEEVVKATQGRIPVF--LDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 238 ~~~~~~l~~i~~~~~~~~~vi--a~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
.+.++.|.++.+.. ++||+ +.|||.+++|+.+++.+||++|.+|+.++.
T Consensus 180 ~~d~elLk~l~~~~--~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~ 230 (283)
T cd04727 180 QAPYELVKETAKLG--RLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFK 230 (283)
T ss_pred CCCHHHHHHHHHhc--CCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhc
Confidence 24667888888765 69997 999999999999999999999999999874
|
Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings. |
| >PRK13523 NADPH dehydrogenase NamA; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.6e-07 Score=88.37 Aligned_cols=102 Identities=21% Similarity=0.197 Sum_probs=77.2
Q ss_pred CCcHHHHHHHHHhcCCcEEEEeec--------CHHH----HHHHHHcCCcEEEEccCCCCC--CCC-chhhHHHHHHHHH
Q 019244 185 SLSWKDVKWLQTITKLPILVKGVL--------TAED----ARIAVQAGAAGIIVSNHGARQ--LDY-VPATIMALEEVVK 249 (344)
Q Consensus 185 ~~~~~~i~~i~~~~~~PvivK~v~--------~~~~----a~~~~~~G~d~I~v~~~gG~~--~~~-g~~~~~~l~~i~~ 249 (344)
.|..+.|+.||+.++.||.+|... +.++ ++.+.++|+|+|.|++..-.. ... ....++...++++
T Consensus 193 Rf~~eii~~ir~~~~~~v~vRis~~d~~~~G~~~~e~~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~ 272 (337)
T PRK13523 193 RFLREIIDAVKEVWDGPLFVRISASDYHPGGLTVQDYVQYAKWMKEQGVDLIDVSSGAVVPARIDVYPGYQVPFAEHIRE 272 (337)
T ss_pred HHHHHHHHHHHHhcCCCeEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccHHHHHHHHh
Confidence 345678999999988999999863 4444 567888999999997532110 111 1113455666776
Q ss_pred HccCCCcEEEecCCCCHHHHHHHHHcC-CCEEEEchHHHH
Q 019244 250 ATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 288 (344)
Q Consensus 250 ~~~~~~~via~GGIr~g~dv~kalalG-Ad~V~ig~~~l~ 288 (344)
.+ ++||++.|+|+++.++.++|+-| ||+|++||+++-
T Consensus 273 ~~--~ipVi~~G~i~~~~~a~~~l~~g~~D~V~~gR~~ia 310 (337)
T PRK13523 273 HA--NIATGAVGLITSGAQAEEILQNNRADLIFIGRELLR 310 (337)
T ss_pred hc--CCcEEEeCCCCCHHHHHHHHHcCCCChHHhhHHHHh
Confidence 66 79999999999999999999987 999999999984
|
|
| >cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.8e-07 Score=82.71 Aligned_cols=49 Identities=16% Similarity=0.306 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 240 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 240 ~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
..+.+.++++.++.++|+++.|||.+.+|+.+++.+||++|.+|+.++.
T Consensus 158 ~~~~~~~l~~~~~~~~pvia~gGI~s~edi~~~~~~Ga~gvivGsai~~ 206 (217)
T cd00331 158 DLNTTERLAPLIPKDVILVSESGISTPEDVKRLAEAGADAVLIGESLMR 206 (217)
T ss_pred CHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHcCCCEEEECHHHcC
Confidence 3455666666543468999999999999999999999999999999875
|
IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis. |
| >cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.4e-06 Score=84.33 Aligned_cols=102 Identities=23% Similarity=0.239 Sum_probs=77.4
Q ss_pred CCcHHHHHHHHHhc--CCcEEEEee--------cCHHH----HHHHHHcCCcEEEEccCCCC--CC-CCch-hhHHHHHH
Q 019244 185 SLSWKDVKWLQTIT--KLPILVKGV--------LTAED----ARIAVQAGAAGIIVSNHGAR--QL-DYVP-ATIMALEE 246 (344)
Q Consensus 185 ~~~~~~i~~i~~~~--~~PvivK~v--------~~~~~----a~~~~~~G~d~I~v~~~gG~--~~-~~g~-~~~~~l~~ 246 (344)
.+..+.++.+|+.+ +.||.+|.. .+.++ ++.+.+.|+|+|.|+.++.+ +. .... ...+.+.+
T Consensus 205 rf~~eiv~aIR~~vG~d~~v~vri~~~~~~~~g~~~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ 284 (336)
T cd02932 205 RFLLEVVDAVRAVWPEDKPLFVRISATDWVEGGWDLEDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAER 284 (336)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEEcccccCCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHHHH
Confidence 44567899999998 689999965 24444 45677899999999753321 11 1111 12456667
Q ss_pred HHHHccCCCcEEEecCCCCHHHHHHHHHcC-CCEEEEchHHHH
Q 019244 247 VVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 288 (344)
Q Consensus 247 i~~~~~~~~~via~GGIr~g~dv~kalalG-Ad~V~ig~~~l~ 288 (344)
+++.+ ++||++.|||.+..++.++++.| ||+|++||+++.
T Consensus 285 ir~~~--~iPVi~~G~i~t~~~a~~~l~~g~aD~V~~gR~~i~ 325 (336)
T cd02932 285 IRQEA--GIPVIAVGLITDPEQAEAILESGRADLVALGRELLR 325 (336)
T ss_pred HHhhC--CCCEEEeCCCCCHHHHHHHHHcCCCCeehhhHHHHh
Confidence 77766 79999999999999999999998 999999999985
|
YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs. |
| >TIGR01182 eda Entner-Doudoroff aldolase | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.2e-06 Score=78.65 Aligned_cols=164 Identities=18% Similarity=0.189 Sum_probs=104.8
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEeccCCccccccHHHHHhhcCCCC-cccccccccccccccccccchhhHHHHhhcCCCC
Q 019244 107 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP-FLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 185 (344)
Q Consensus 107 ~d~~~~~~~i~~a~~ag~~~l~~tvd~~~~g~r~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (344)
.+.+...+.++.+.++|++.+.+|..+|..-.-.+.++..| |. -++..++- ..+........+.+..++ +.
T Consensus 17 ~~~e~a~~~~~al~~~Gi~~iEit~~t~~a~~~i~~l~~~~--~~~~vGAGTVl--~~~~a~~a~~aGA~Fivs----P~ 88 (204)
T TIGR01182 17 DDVDDALPLAKALIEGGLRVLEVTLRTPVALDAIRLLRKEV--PDALIGAGTVL--NPEQLRQAVDAGAQFIVS----PG 88 (204)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHHC--CCCEEEEEeCC--CHHHHHHHHHcCCCEEEC----CC
Confidence 46677777888888999999999998876433334444433 21 11111221 100000001112222232 23
Q ss_pred CcHHHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCC
Q 019244 186 LSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 265 (344)
Q Consensus 186 ~~~~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~ 265 (344)
++-+.+++.++ .++|++- +++|+.++..+.++|+|.|+++-.+ .-+|+..+.. ++.-+ .+++++.+|||.
T Consensus 89 ~~~~v~~~~~~-~~i~~iP-G~~TptEi~~A~~~Ga~~vKlFPA~---~~GG~~yika---l~~pl-p~i~~~ptGGV~- 158 (204)
T TIGR01182 89 LTPELAKHAQD-HGIPIIP-GVATPSEIMLALELGITALKLFPAE---VSGGVKMLKA---LAGPF-PQVRFCPTGGIN- 158 (204)
T ss_pred CCHHHHHHHHH-cCCcEEC-CCCCHHHHHHHHHCCCCEEEECCch---hcCCHHHHHH---HhccC-CCCcEEecCCCC-
Confidence 44455666554 5888775 7899999999999999999997421 0122444444 43344 479999999998
Q ss_pred HHHHHHHHHcCCCEEEEchHHHH
Q 019244 266 GTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 266 g~dv~kalalGAd~V~ig~~~l~ 288 (344)
.+++..++++||.+|++|+.++.
T Consensus 159 ~~N~~~~l~aGa~~vg~Gs~L~~ 181 (204)
T TIGR01182 159 LANVRDYLAAPNVACGGGSWLVP 181 (204)
T ss_pred HHHHHHHHhCCCEEEEEChhhcC
Confidence 58999999999999999998864
|
2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida |
| >cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.6e-07 Score=79.83 Aligned_cols=96 Identities=26% Similarity=0.343 Sum_probs=69.0
Q ss_pred cHHHHHHHHHhc-CCcEEEEeecCHHHHHH-HHHcCCcEEEEccCCCCCCCCchh--hHHHHHHHHHHccCCCcEEEecC
Q 019244 187 SWKDVKWLQTIT-KLPILVKGVLTAEDARI-AVQAGAAGIIVSNHGARQLDYVPA--TIMALEEVVKATQGRIPVFLDGG 262 (344)
Q Consensus 187 ~~~~i~~i~~~~-~~PvivK~v~~~~~a~~-~~~~G~d~I~v~~~gG~~~~~g~~--~~~~l~~i~~~~~~~~~via~GG 262 (344)
..+.++++++.+ +.|+++|.....+.... +.+.|+|.|.++++.+.+...... ....+..+... .++||+++||
T Consensus 101 ~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~pi~~~GG 178 (200)
T cd04722 101 DLELIRELREAVPDVKVVVKLSPTGELAAAAAEEAGVDEVGLGNGGGGGGGRDAVPIADLLLILAKRG--SKVPVIAGGG 178 (200)
T ss_pred HHHHHHHHHHhcCCceEEEEECCCCccchhhHHHcCCCEEEEcCCcCCCCCccCchhHHHHHHHHHhc--CCCCEEEECC
Confidence 456789999988 89999997643322222 689999999998754432222111 12333333332 3799999999
Q ss_pred CCCHHHHHHHHHcCCCEEEEch
Q 019244 263 VRRGTDVFKALALGASGIFIGR 284 (344)
Q Consensus 263 Ir~g~dv~kalalGAd~V~ig~ 284 (344)
|.+++++.+++.+|||+|++||
T Consensus 179 i~~~~~~~~~~~~Gad~v~vgs 200 (200)
T cd04722 179 INDPEDAAEALALGADGVIVGS 200 (200)
T ss_pred CCCHHHHHHHHHhCCCEEEecC
Confidence 9999999999999999999986
|
Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN. |
| >cd00452 KDPG_aldolase KDPG and KHG aldolase | Back alignment and domain information |
|---|
Probab=98.59 E-value=9.1e-07 Score=78.71 Aligned_cols=89 Identities=18% Similarity=0.163 Sum_probs=68.3
Q ss_pred HHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHH
Q 019244 190 DVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDV 269 (344)
Q Consensus 190 ~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv 269 (344)
.+...++..+.|+++ ++.|++++..+.++|+|+|.++... +...+.+..+.+..+ .+|+++.||| +.+++
T Consensus 88 ~~~~~~~~~~~~~i~-gv~t~~e~~~A~~~Gad~i~~~p~~-------~~g~~~~~~l~~~~~-~~p~~a~GGI-~~~n~ 157 (190)
T cd00452 88 EVVKAANRAGIPLLP-GVATPTEIMQALELGADIVKLFPAE-------AVGPAYIKALKGPFP-QVRFMPTGGV-SLDNA 157 (190)
T ss_pred HHHHHHHHcCCcEEC-CcCCHHHHHHHHHCCCCEEEEcCCc-------ccCHHHHHHHHhhCC-CCeEEEeCCC-CHHHH
Confidence 344445556888776 6779999999999999999985321 113345555554442 5999999999 89999
Q ss_pred HHHHHcCCCEEEEchHHHH
Q 019244 270 FKALALGASGIFIGRPVVY 288 (344)
Q Consensus 270 ~kalalGAd~V~ig~~~l~ 288 (344)
.+++..||++|.+++.++.
T Consensus 158 ~~~~~~G~~~v~v~s~i~~ 176 (190)
T cd00452 158 AEWLAAGVVAVGGGSLLPK 176 (190)
T ss_pred HHHHHCCCEEEEEchhcch
Confidence 9999999999999998863
|
This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources. |
| >cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.4e-06 Score=84.31 Aligned_cols=100 Identities=18% Similarity=0.105 Sum_probs=76.3
Q ss_pred CCcHHHHHHHHHhcCC-cEEEEeec-----------CHHH----HHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHH
Q 019244 185 SLSWKDVKWLQTITKL-PILVKGVL-----------TAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVV 248 (344)
Q Consensus 185 ~~~~~~i~~i~~~~~~-PvivK~v~-----------~~~~----a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~ 248 (344)
.|..+.|+.||+.++. ||.+|... +.++ ++.+.+.|+|+|.|+.. ..........++...+++
T Consensus 203 rf~~eii~air~~vg~d~v~vRis~~~~~~~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~g-~~~~~~~~~~~~~~~~ik 281 (338)
T cd02933 203 RFLLEVVDAVAEAIGADRVGIRLSPFGTFNDMGDSDPEATFSYLAKELNKRGLAYLHLVEP-RVAGNPEDQPPDFLDFLR 281 (338)
T ss_pred hHHHHHHHHHHHHhCCCceEEEECccccCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEecC-CCCCcccccchHHHHHHH
Confidence 4566789999998854 89999852 3333 57788999999999642 221111234556677777
Q ss_pred HHccCCCcEEEecCCCCHHHHHHHHHcC-CCEEEEchHHHH
Q 019244 249 KATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 288 (344)
Q Consensus 249 ~~~~~~~~via~GGIr~g~dv~kalalG-Ad~V~ig~~~l~ 288 (344)
+.+ ++||+++|||+ +.++.++++.| ||+|++||+++.
T Consensus 282 ~~~--~ipvi~~G~i~-~~~a~~~l~~g~~D~V~~gR~~la 319 (338)
T cd02933 282 KAF--KGPLIAAGGYD-AESAEAALADGKADLVAFGRPFIA 319 (338)
T ss_pred HHc--CCCEEEECCCC-HHHHHHHHHcCCCCEEEeCHhhhh
Confidence 777 79999999997 99999999987 999999999975
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes. |
| >TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1 | Back alignment and domain information |
|---|
Probab=98.58 E-value=7.9e-07 Score=82.61 Aligned_cols=98 Identities=24% Similarity=0.304 Sum_probs=80.6
Q ss_pred HHHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCC---------------------C----------C
Q 019244 188 WKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQL---------------------D----------Y 236 (344)
Q Consensus 188 ~~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~---------------------~----------~ 236 (344)
.+.+..++..+++|++. ++.+.+++.++.+.|+|.|-..+.||+.. . .
T Consensus 103 de~~~~~K~~f~vpfma-d~~~l~EAlrai~~GadmI~Tt~e~gTg~v~~av~hlr~~~~~~~~~~~~~~~~~~~~~a~~ 181 (287)
T TIGR00343 103 DWTFHIDKKKFKVPFVC-GARDLGEALRRINEGAAMIRTKGEAGTGNIVEAVRHMRKINEEIRQIQNMLEEEDLAAVAKE 181 (287)
T ss_pred HHHHHHHHHHcCCCEEc-cCCCHHHHHHHHHCCCCEEeccccCCCccHHHHHHHHHHHHHHHHHHhcccchhHHhhhhcc
Confidence 45688888888888775 57899999999999999998877777632 0 0
Q ss_pred chhhHHHHHHHHHHccCCCcEE--EecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 237 VPATIMALEEVVKATQGRIPVF--LDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 237 g~~~~~~l~~i~~~~~~~~~vi--a~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
-.+.++.|.++.+.. ++||+ +.|||.|+.|+.+++.+||++|.+|+.++.
T Consensus 182 ~~~~~elLkei~~~~--~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~k 233 (287)
T TIGR00343 182 LRVPVELLLEVLKLG--KLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFK 233 (287)
T ss_pred cCCCHHHHHHHHHhC--CCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhc
Confidence 124667788887754 79998 999999999999999999999999999875
|
This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals. |
| >TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase | Back alignment and domain information |
|---|
Probab=98.56 E-value=7.3e-07 Score=81.46 Aligned_cols=101 Identities=25% Similarity=0.434 Sum_probs=74.8
Q ss_pred cHHHHHHHHHhcCCcEEEEe-ecCHHHHHHHHHcCCcEEEEccC---------------C-CC-----------------
Q 019244 187 SWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSNH---------------G-AR----------------- 232 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~-v~~~~~a~~~~~~G~d~I~v~~~---------------g-G~----------------- 232 (344)
+++.++++++.+++|+.+++ +.+.++++.+.++|+|.|++... | .+
T Consensus 60 ~~~~i~~i~~~~~~pi~~ggGI~~~ed~~~~~~~Ga~~vvlgs~~l~d~~~~~~~~~~~g~~~i~~sid~~~~~v~~~g~ 139 (230)
T TIGR00007 60 NLPVIKKIVRETGVPVQVGGGIRSLEDVEKLLDLGVDRVIIGTAAVENPDLVKELLKEYGPERIVVSLDARGGEVAVKGW 139 (230)
T ss_pred cHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcCCCEEEEChHHhhCHHHHHHHHHHhCCCcEEEEEEEECCEEEEcCC
Confidence 45678888887788888876 46788888888888888877521 1 00
Q ss_pred -C---C--------------C------------CchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEE
Q 019244 233 -Q---L--------------D------------YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 282 (344)
Q Consensus 233 -~---~--------------~------------~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~i 282 (344)
. . + ...+.++.+.++.+.. ++|+++.|||++.+|+.+++.+||+.|++
T Consensus 140 ~~~~~~~~~~~~~~~~~~g~~~ii~~~~~~~g~~~g~~~~~i~~i~~~~--~ipvia~GGi~~~~di~~~~~~Gadgv~i 217 (230)
T TIGR00007 140 LEKSEVSLEELAKRLEELGLEGIIYTDISRDGTLSGPNFELTKELVKAV--NVPVIASGGVSSIDDLIALKKLGVYGVIV 217 (230)
T ss_pred cccCCCCHHHHHHHHHhCCCCEEEEEeecCCCCcCCCCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 0 0 0 0112356666666654 79999999999999999999999999999
Q ss_pred chHHHHH
Q 019244 283 GRPVVYS 289 (344)
Q Consensus 283 g~~~l~~ 289 (344)
|+.++.+
T Consensus 218 g~a~~~~ 224 (230)
T TIGR00007 218 GKALYEG 224 (230)
T ss_pred eHHHHcC
Confidence 9999864
|
Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317). |
| >TIGR00126 deoC deoxyribose-phosphate aldolase | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.2e-07 Score=85.63 Aligned_cols=93 Identities=26% Similarity=0.289 Sum_probs=66.6
Q ss_pred cHHHHHHHHHhcCCcEEEEee-----cCHHH----HHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcE
Q 019244 187 SWKDVKWLQTITKLPILVKGV-----LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 257 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v-----~~~~~----a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~v 257 (344)
.++++.++++..+ .+.+|.+ ++.++ ++.+.++|+|+|..|+.-+ .+..+.+.+..+++.++++++|
T Consensus 104 v~~ei~~i~~~~~-g~~lKvIlE~~~L~~~ei~~a~~ia~eaGADfvKTsTGf~----~~gat~~dv~~m~~~v~~~v~I 178 (211)
T TIGR00126 104 VYDDIRAVVEACA-GVLLKVIIETGLLTDEEIRKACEICIDAGADFVKTSTGFG----AGGATVEDVRLMRNTVGDTIGV 178 (211)
T ss_pred HHHHHHHHHHHcC-CCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEeCCCCC----CCCCCHHHHHHHHHHhccCCeE
Confidence 4457888888763 3334444 44433 4678899999999985211 1234555555556666668999
Q ss_pred EEecCCCCHHHHHHHHHcCCCEEEEch
Q 019244 258 FLDGGVRRGTDVFKALALGASGIFIGR 284 (344)
Q Consensus 258 ia~GGIr~g~dv~kalalGAd~V~ig~ 284 (344)
.++||||+.+|+++.+.+||+-++..+
T Consensus 179 KaaGGirt~~~a~~~i~aGa~riGts~ 205 (211)
T TIGR00126 179 KASGGVRTAEDAIAMIEAGASRIGASA 205 (211)
T ss_pred EEeCCCCCHHHHHHHHHHhhHHhCcch
Confidence 999999999999999999999876643
|
Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria. |
| >TIGR00262 trpA tryptophan synthase, alpha subunit | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.3e-05 Score=74.69 Aligned_cols=51 Identities=22% Similarity=0.371 Sum_probs=43.3
Q ss_pred hhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhh
Q 019244 239 ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 291 (344)
Q Consensus 239 ~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~ 291 (344)
...+.+.++++.. +.||++.|||+|++++.+++..|||+|.+|+.++.-+.
T Consensus 185 ~~~~~i~~lr~~~--~~pi~vgfGI~~~e~~~~~~~~GADgvVvGSaiv~~~~ 235 (256)
T TIGR00262 185 ALNELVKRLKAYS--AKPVLVGFGISKPEQVKQAIDAGADGVIVGSAIVKIIE 235 (256)
T ss_pred hHHHHHHHHHhhc--CCCEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHHHHH
Confidence 3456677777654 67999999999999999999999999999999987654
|
Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences. |
| >cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3 | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.6e-06 Score=81.72 Aligned_cols=102 Identities=19% Similarity=0.203 Sum_probs=72.7
Q ss_pred CCcHHHHHHHHHhcCC--cEEEEee--------cCHHH----HHHHHHcC-CcEEEEccCCCCCC----------CCch-
Q 019244 185 SLSWKDVKWLQTITKL--PILVKGV--------LTAED----ARIAVQAG-AAGIIVSNHGARQL----------DYVP- 238 (344)
Q Consensus 185 ~~~~~~i~~i~~~~~~--PvivK~v--------~~~~~----a~~~~~~G-~d~I~v~~~gG~~~----------~~g~- 238 (344)
.+..+.++.+|+.++. ||.+|.. .+.++ ++.+.++| +|+|.|+...-... ....
T Consensus 192 r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~~~G~~~~e~~~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~ 271 (343)
T cd04734 192 RFLLEVLAAVRAAVGPDFIVGIRISGDEDTEGGLSPDEALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPG 271 (343)
T ss_pred HHHHHHHHHHHHHcCCCCeEEEEeehhhccCCCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCcc
Confidence 4456789999999865 4555544 13333 56788898 89999964211110 0111
Q ss_pred hhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcC-CCEEEEchHHHH
Q 019244 239 ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 288 (344)
Q Consensus 239 ~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalG-Ad~V~ig~~~l~ 288 (344)
..++....+++.+ ++||+++|||++.+++.++++.| ||+|++||+++.
T Consensus 272 ~~~~~~~~ik~~~--~ipvi~~G~i~~~~~~~~~l~~~~~D~V~~gR~~la 320 (343)
T cd04734 272 PFLPLAARIKQAV--DLPVFHAGRIRDPAEAEQALAAGHADMVGMTRAHIA 320 (343)
T ss_pred hhHHHHHHHHHHc--CCCEEeeCCCCCHHHHHHHHHcCCCCeeeecHHhHh
Confidence 1345666777766 79999999999999999999976 999999999985
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase. |
| >PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.7e-06 Score=76.46 Aligned_cols=175 Identities=15% Similarity=0.167 Sum_probs=109.5
Q ss_pred HHHcCCcc--ccCCHHHHHHHHHHHHHcCCcEEEeccCCccccccHHHHHhhcC--CCC-cccccccccccccccccccc
Q 019244 97 ASAAGTIM--VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFT--LPP-FLTLKNFQGLDLGKMDEAND 171 (344)
Q Consensus 97 A~~~g~~~--~~~d~~~~~~~i~~a~~ag~~~l~~tvd~~~~g~r~~~~~~~~~--~~~-g~~~~~~~~~~~~~~~~~~~ 171 (344)
-.+.++.- -..+.+....+++.+.++|++.+.+|..+|..-.....++..+. .|. -++...+ +..+.......
T Consensus 12 l~~~~vi~Vvr~~~~~~a~~~~~al~~gGi~~iEiT~~tp~a~~~i~~l~~~~~~~~p~~~vGaGTV--l~~e~a~~a~~ 89 (222)
T PRK07114 12 MKATGMVPVFYHADVEVAKKVIKACYDGGARVFEFTNRGDFAHEVFAELVKYAAKELPGMILGVGSI--VDAATAALYIQ 89 (222)
T ss_pred HHhCCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCcHHHHHHHHHHHHHhhCCCeEEeeEeC--cCHHHHHHHHH
Confidence 34445433 24577778888889999999999999988864333334432221 221 0111111 11000000111
Q ss_pred hhhHHHHhhcCCCCCcHHHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHc
Q 019244 172 SGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT 251 (344)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~ 251 (344)
.+.+..++ +.++-+.++..++ .++|++ -+++|+.++..+.++|++.|+++-.+ ..|++.+ +.+...+
T Consensus 90 aGA~FiVs----P~~~~~v~~~~~~-~~i~~i-PG~~TpsEi~~A~~~Ga~~vKlFPA~----~~G~~~i---kal~~p~ 156 (222)
T PRK07114 90 LGANFIVT----PLFNPDIAKVCNR-RKVPYS-PGCGSLSEIGYAEELGCEIVKLFPGS----VYGPGFV---KAIKGPM 156 (222)
T ss_pred cCCCEEEC----CCCCHHHHHHHHH-cCCCEe-CCCCCHHHHHHHHHCCCCEEEECccc----ccCHHHH---HHHhccC
Confidence 12222233 2344555666655 588876 57899999999999999999997422 1234433 4343334
Q ss_pred cCCCcEEEecCCCC-HHHHHHHHHcCCCEEEEchHHH
Q 019244 252 QGRIPVFLDGGVRR-GTDVFKALALGASGIFIGRPVV 287 (344)
Q Consensus 252 ~~~~~via~GGIr~-g~dv~kalalGAd~V~ig~~~l 287 (344)
.+++++.+|||.- ..++..+++.||.+|++|+.++
T Consensus 157 -p~i~~~ptGGV~~~~~n~~~yl~aGa~avg~Gs~L~ 192 (222)
T PRK07114 157 -PWTKIMPTGGVEPTEENLKKWFGAGVTCVGMGSKLI 192 (222)
T ss_pred -CCCeEEeCCCCCcchhcHHHHHhCCCEEEEEChhhc
Confidence 3799999999995 4899999999999999999876
|
|
| >cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2 | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.1e-06 Score=82.02 Aligned_cols=102 Identities=24% Similarity=0.297 Sum_probs=76.5
Q ss_pred CCcHHHHHHHHHhc--CCcEEEEee--------cCHHH----HHHHHHcCCcEEEEccCCCCCCCCc---------h--h
Q 019244 185 SLSWKDVKWLQTIT--KLPILVKGV--------LTAED----ARIAVQAGAAGIIVSNHGARQLDYV---------P--A 239 (344)
Q Consensus 185 ~~~~~~i~~i~~~~--~~PvivK~v--------~~~~~----a~~~~~~G~d~I~v~~~gG~~~~~g---------~--~ 239 (344)
.|..+.|+.||+.+ +.||.+|.. .+.++ ++.+.++|+|+|.|+...-.+.... + .
T Consensus 200 rf~~EiI~aIR~avG~d~~v~vris~~~~~~~g~~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ 279 (338)
T cd04733 200 RLLLEIYDAIRAAVGPGFPVGIKLNSADFQRGGFTEEDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAY 279 (338)
T ss_pred HHHHHHHHHHHHHcCCCCeEEEEEcHHHcCCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCCCccccccccCCccccchh
Confidence 45678899999998 489999985 35444 5678899999999964211111110 0 0
Q ss_pred hHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcC-CCEEEEchHHHH
Q 019244 240 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 288 (344)
Q Consensus 240 ~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalG-Ad~V~ig~~~l~ 288 (344)
..+...++++.+ ++||+++|+|.+..++.++++.| ||.|++||+++-
T Consensus 280 ~~~~~~~ik~~v--~iPVi~~G~i~t~~~a~~~l~~g~aD~V~lgR~~ia 327 (338)
T cd04733 280 FLEFAEKIRKVT--KTPLMVTGGFRTRAAMEQALASGAVDGIGLARPLAL 327 (338)
T ss_pred hHHHHHHHHHHc--CCCEEEeCCCCCHHHHHHHHHcCCCCeeeeChHhhh
Confidence 134556677766 79999999999999999999987 999999999974
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=3.2e-06 Score=78.82 Aligned_cols=98 Identities=22% Similarity=0.327 Sum_probs=78.9
Q ss_pred HHHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCC---------------------CC---------Cc
Q 019244 188 WKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ---------------------LD---------YV 237 (344)
Q Consensus 188 ~~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~---------------------~~---------~g 237 (344)
.+.+..++..+++|++. ++.+.+++.++.+.|+|.|-..|-.|+. +. .-
T Consensus 110 d~~~~~~K~~f~~~fma-d~~~l~EAlrai~~GadmI~Ttge~gtg~v~~av~h~r~~~~~i~~L~gyt~~~~~~~a~~~ 188 (293)
T PRK04180 110 DEEYHIDKWDFTVPFVC-GARNLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHMRQINGEIRRLTSMSEDELYTAAKEL 188 (293)
T ss_pred HHHHHHHHHHcCCCEEc-cCCCHHHHHHHHHCCCCeeeccCCCCCccHHHHHHHHHHHHHHHHHHhCCCHHHHHhhcccc
Confidence 35688888888888775 5789999999999999999877544431 00 01
Q ss_pred hhhHHHHHHHHHHccCCCcEE--EecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 238 PATIMALEEVVKATQGRIPVF--LDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 238 ~~~~~~l~~i~~~~~~~~~vi--a~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
.+.++.|.++.+.. ++||+ +.|||.|+.|+.+++.+||++|.+|+.++.
T Consensus 189 ~~~~elL~ei~~~~--~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~k 239 (293)
T PRK04180 189 QAPYELVKEVAELG--RLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFK 239 (293)
T ss_pred CCCHHHHHHHHHhC--CCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhc
Confidence 24667788887765 79998 999999999999999999999999999874
|
|
| >COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.44 E-value=4.7e-06 Score=73.66 Aligned_cols=87 Identities=15% Similarity=0.155 Sum_probs=70.3
Q ss_pred CCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCC--CchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcC
Q 019244 199 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLD--YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 276 (344)
Q Consensus 199 ~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~--~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalG 276 (344)
..-+.+--+.|.|++..+.++|+|+|-..-+|.+... -..|.++.++++.+ ...+||+.|.+.|++++.+++.+|
T Consensus 126 ~~~l~MAD~St~ee~l~a~~~G~D~IGTTLsGYT~~~~~~~~pDf~lvk~l~~---~~~~vIAEGr~~tP~~Ak~a~~~G 202 (229)
T COG3010 126 PGQLAMADCSTFEEGLNAHKLGFDIIGTTLSGYTGYTEKPTEPDFQLVKQLSD---AGCRVIAEGRYNTPEQAKKAIEIG 202 (229)
T ss_pred CCcEEEeccCCHHHHHHHHHcCCcEEecccccccCCCCCCCCCcHHHHHHHHh---CCCeEEeeCCCCCHHHHHHHHHhC
Confidence 4457777789999999999999999966555544321 23467788888776 379999999999999999999999
Q ss_pred CCEEEEchHHHH
Q 019244 277 ASGIFIGRPVVY 288 (344)
Q Consensus 277 Ad~V~ig~~~l~ 288 (344)
|++|.+|+++-.
T Consensus 203 a~aVvVGsAITR 214 (229)
T COG3010 203 ADAVVVGSAITR 214 (229)
T ss_pred CeEEEECcccCC
Confidence 999999998743
|
|
| >cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=98.42 E-value=3.2e-06 Score=77.98 Aligned_cols=75 Identities=20% Similarity=0.282 Sum_probs=60.3
Q ss_pred HHHHHHHHHcCCcEEEEccCC--CCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHc-CCCEEEEchHH
Q 019244 210 AEDARIAVQAGAAGIIVSNHG--ARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL-GASGIFIGRPV 286 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~~g--G~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalal-GAd~V~ig~~~ 286 (344)
.+.++.+.+.|+|+|.+++.. |+ ..+ ..++.+.++.+.. ++||+++|||++.+|+.+++.. |||+|++|+++
T Consensus 152 ~~~~~~l~~~G~d~i~v~~i~~~g~--~~g-~~~~~i~~i~~~~--~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~al 226 (243)
T cd04731 152 VEWAKEVEELGAGEILLTSMDRDGT--KKG-YDLELIRAVSSAV--NIPVIASGGAGKPEHFVEAFEEGGADAALAASIF 226 (243)
T ss_pred HHHHHHHHHCCCCEEEEeccCCCCC--CCC-CCHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHHH
Confidence 466788999999999996521 21 112 3567777777665 7999999999999999999997 99999999999
Q ss_pred HHH
Q 019244 287 VYS 289 (344)
Q Consensus 287 l~~ 289 (344)
+.+
T Consensus 227 ~~~ 229 (243)
T cd04731 227 HFG 229 (243)
T ss_pred HcC
Confidence 864
|
Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria. |
| >PRK07695 transcriptional regulator TenI; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=6e-06 Score=74.02 Aligned_cols=94 Identities=22% Similarity=0.246 Sum_probs=68.2
Q ss_pred HHHHHHhc-CCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCC--CCchhhHHHHHHHHHHccCCCcEEEecCCCCHH
Q 019244 191 VKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQL--DYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 267 (344)
Q Consensus 191 i~~i~~~~-~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~--~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~ 267 (344)
++.+++.+ +..|.+ .+.+.++++.+.+.|+|+|.++....+.. ...+..++.+.++.+.+ ++||++.||| +..
T Consensus 86 ~~~~r~~~~~~~ig~-s~~s~e~a~~a~~~Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~~--~ipvia~GGI-~~~ 161 (201)
T PRK07695 86 VRSVREKFPYLHVGY-SVHSLEEAIQAEKNGADYVVYGHVFPTDCKKGVPARGLEELSDIARAL--SIPVIAIGGI-TPE 161 (201)
T ss_pred HHHHHHhCCCCEEEE-eCCCHHHHHHHHHcCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHhC--CCCEEEEcCC-CHH
Confidence 34455544 344554 35788999999999999997653222111 11123456777776655 6999999999 899
Q ss_pred HHHHHHHcCCCEEEEchHHHH
Q 019244 268 DVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 268 dv~kalalGAd~V~ig~~~l~ 288 (344)
++.+++.+||++|++++.++.
T Consensus 162 ~~~~~~~~Ga~gvav~s~i~~ 182 (201)
T PRK07695 162 NTRDVLAAGVSGIAVMSGIFS 182 (201)
T ss_pred HHHHHHHcCCCEEEEEHHHhc
Confidence 999999999999999999975
|
|
| >cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.1e-06 Score=78.29 Aligned_cols=77 Identities=19% Similarity=0.302 Sum_probs=63.0
Q ss_pred ecCHHHHHHHHHcCCcEEEEcc--CCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEch
Q 019244 207 VLTAEDARIAVQAGAAGIIVSN--HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 284 (344)
Q Consensus 207 v~~~~~a~~~~~~G~d~I~v~~--~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~ 284 (344)
..++..++++.++|++.|-.-+ -| +. .|+.+.+.+..+++.. ++|||++|||.+++|+.+++.+|||+|++++
T Consensus 131 ~dd~~~ar~l~~~G~~~vmPlg~pIG-sg--~Gi~~~~~I~~I~e~~--~vpVI~egGI~tpeda~~AmelGAdgVlV~S 205 (248)
T cd04728 131 TDDPVLAKRLEDAGCAAVMPLGSPIG-SG--QGLLNPYNLRIIIERA--DVPVIVDAGIGTPSDAAQAMELGADAVLLNT 205 (248)
T ss_pred CCCHHHHHHHHHcCCCEeCCCCcCCC-CC--CCCCCHHHHHHHHHhC--CCcEEEeCCCCCHHHHHHHHHcCCCEEEECh
Confidence 4689999999999999995511 12 11 3555677888777764 7999999999999999999999999999999
Q ss_pred HHHH
Q 019244 285 PVVY 288 (344)
Q Consensus 285 ~~l~ 288 (344)
.+..
T Consensus 206 AIt~ 209 (248)
T cd04728 206 AIAK 209 (248)
T ss_pred HhcC
Confidence 9864
|
ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH). |
| >cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.8e-06 Score=83.68 Aligned_cols=100 Identities=18% Similarity=0.255 Sum_probs=73.3
Q ss_pred cHHHHHHHHHhc--CCcEEEEeec----------------------CHHH----HHHHHHcCCcEEEEccCCCCCCCC--
Q 019244 187 SWKDVKWLQTIT--KLPILVKGVL----------------------TAED----ARIAVQAGAAGIIVSNHGARQLDY-- 236 (344)
Q Consensus 187 ~~~~i~~i~~~~--~~PvivK~v~----------------------~~~~----a~~~~~~G~d~I~v~~~gG~~~~~-- 236 (344)
..+.|+.||+.+ +.||.+|... +.++ ++.+.++|+|+|.|++....+..+
T Consensus 204 ~~eii~~vr~~~g~~f~v~vri~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~g~~~~~~~~~ 283 (382)
T cd02931 204 AIEIVEEIKARCGEDFPVSLRYSVKSYIKDLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDAGSYDAWYWNH 283 (382)
T ss_pred HHHHHHHHHHhcCCCceEEEEEechhhccccccccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCccccccc
Confidence 346799999988 4699999752 2343 567778999999997422111111
Q ss_pred -----chh-hHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcC-CCEEEEchHHHH
Q 019244 237 -----VPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 288 (344)
Q Consensus 237 -----g~~-~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalG-Ad~V~ig~~~l~ 288 (344)
... .......+++.+ ++||+++|||+++.++.++|+-| ||+|++||+++.
T Consensus 284 ~~~~~~~~~~~~~~~~ik~~~--~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~la 340 (382)
T cd02931 284 PPMYQKKGMYLPYCKALKEVV--DVPVIMAGRMEDPELASEAINEGIADMISLGRPLLA 340 (382)
T ss_pred CCccCCcchhHHHHHHHHHHC--CCCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhHh
Confidence 111 124456666666 79999999999999999999977 999999999985
|
Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae. |
| >PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=3.6e-06 Score=77.44 Aligned_cols=100 Identities=23% Similarity=0.410 Sum_probs=73.8
Q ss_pred cHHHHHHHHHhcCCcEEEEe-ecCHHHHHHHHHcCCcEEEEccC---------------CC-C-----------------
Q 019244 187 SWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSNH---------------GA-R----------------- 232 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~-v~~~~~a~~~~~~G~d~I~v~~~---------------gG-~----------------- 232 (344)
.++.|+++.+.+++|+++-+ +.+.++++.+.++|+|.|+++.. |. +
T Consensus 64 ~~~~i~~i~~~~~~~l~v~GGi~~~~~~~~~~~~Ga~~v~iGs~~~~~~~~~~~i~~~~g~~~i~~sid~~~~~v~~~g~ 143 (241)
T PRK13585 64 NAEAIEKIIEAVGVPVQLGGGIRSAEDAASLLDLGVDRVILGTAAVENPEIVRELSEEFGSERVMVSLDAKDGEVVIKGW 143 (241)
T ss_pred cHHHHHHHHHHcCCcEEEcCCcCCHHHHHHHHHcCCCEEEEChHHhhChHHHHHHHHHhCCCcEEEEEEeeCCEEEECCC
Confidence 46677777777788888754 46778888888888888777531 10 0
Q ss_pred ------C----------------------CC--CchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEE
Q 019244 233 ------Q----------------------LD--YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 282 (344)
Q Consensus 233 ------~----------------------~~--~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~i 282 (344)
. .+ ...+.++.+.++.+.+ ++||++.|||++.+|+.+++.+||+.|++
T Consensus 144 ~~~~~~~~~~~~~~~~~~G~~~i~~~~~~~~g~~~g~~~~~i~~i~~~~--~iPvia~GGI~~~~di~~~~~~Ga~gv~v 221 (241)
T PRK13585 144 TEKTGYTPVEAAKRFEELGAGSILFTNVDVEGLLEGVNTEPVKELVDSV--DIPVIASGGVTTLDDLRALKEAGAAGVVV 221 (241)
T ss_pred cccCCCCHHHHHHHHHHcCCCEEEEEeecCCCCcCCCCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 0 00 0113456677777665 69999999999999999999999999999
Q ss_pred chHHHH
Q 019244 283 GRPVVY 288 (344)
Q Consensus 283 g~~~l~ 288 (344)
|+.++.
T Consensus 222 gsa~~~ 227 (241)
T PRK13585 222 GSALYK 227 (241)
T ss_pred EHHHhc
Confidence 999975
|
|
| >CHL00200 trpA tryptophan synthase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=6.1e-05 Score=70.40 Aligned_cols=47 Identities=26% Similarity=0.381 Sum_probs=39.5
Q ss_pred HHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhh
Q 019244 243 ALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 291 (344)
Q Consensus 243 ~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~ 291 (344)
.+..+++.. +.||...+||++.+++.+....|||+|.+|+.++.-+.
T Consensus 193 ~i~~ir~~t--~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGSalv~~i~ 239 (263)
T CHL00200 193 LIETIKKMT--NKPIILGFGISTSEQIKQIKGWNINGIVIGSACVQILL 239 (263)
T ss_pred HHHHHHHhc--CCCEEEECCcCCHHHHHHHHhcCCCEEEECHHHHHHHH
Confidence 445555533 79999999999999999999999999999999987554
|
|
| >PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=4.8e-06 Score=76.56 Aligned_cols=101 Identities=27% Similarity=0.325 Sum_probs=79.0
Q ss_pred CcHHHHHHHHHhcCCcEEEEe-ecCHHHHHHHHHcCCcEEEEccC---------------CCCC---C------------
Q 019244 186 LSWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSNH---------------GARQ---L------------ 234 (344)
Q Consensus 186 ~~~~~i~~i~~~~~~PvivK~-v~~~~~a~~~~~~G~d~I~v~~~---------------gG~~---~------------ 234 (344)
.+.+.|+++.+.+++|+.+.+ +.+.|+++++.++|++.+++.+. |.+- +
T Consensus 63 ~n~~~I~~i~~~~~~pi~vGGGIrs~e~v~~~l~~Ga~kvvigt~a~~~~~~l~~~~~~fg~~ivvslD~~~g~v~~~gw 142 (234)
T PRK13587 63 REFDYIKSLRRLTTKDIEVGGGIRTKSQIMDYFAAGINYCIVGTKGIQDTDWLKEMAHTFPGRIYLSVDAYGEDIKVNGW 142 (234)
T ss_pred chHHHHHHHHhhcCCeEEEcCCcCCHHHHHHHHHCCCCEEEECchHhcCHHHHHHHHHHcCCCEEEEEEeeCCEEEecCC
Confidence 356789999998899999976 57899999999999999988531 1110 0
Q ss_pred ------------------------------CC--chhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEE
Q 019244 235 ------------------------------DY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 282 (344)
Q Consensus 235 ------------------------------~~--g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~i 282 (344)
++ ..+.++.+.++.+.. ++||+++|||+|.+|+.+++.+|+++|.+
T Consensus 143 ~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~G~~~~li~~l~~~~--~ipvi~~GGi~s~edi~~l~~~G~~~viv 220 (234)
T PRK13587 143 EEDTELNLFSFVRQLSDIPLGGIIYTDIAKDGKMSGPNFELTGQLVKAT--TIPVIASGGIRHQQDIQRLASLNVHAAII 220 (234)
T ss_pred cccCCCCHHHHHHHHHHcCCCEEEEecccCcCCCCccCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 00 113455666666554 79999999999999999999999999999
Q ss_pred chHHHH
Q 019244 283 GRPVVY 288 (344)
Q Consensus 283 g~~~l~ 288 (344)
|+.++.
T Consensus 221 G~a~~~ 226 (234)
T PRK13587 221 GKAAHQ 226 (234)
T ss_pred hHHHHh
Confidence 999875
|
|
| >PRK00208 thiG thiazole synthase; Reviewed | Back alignment and domain information |
|---|
Probab=98.37 E-value=3.1e-06 Score=77.30 Aligned_cols=77 Identities=19% Similarity=0.327 Sum_probs=62.4
Q ss_pred ecCHHHHHHHHHcCCcEEEE--ccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEch
Q 019244 207 VLTAEDARIAVQAGAAGIIV--SNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 284 (344)
Q Consensus 207 v~~~~~a~~~~~~G~d~I~v--~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~ 284 (344)
..++..++++.++|++.|-. +--| +. .|+.+.+.+..+++.. ++|||++|||.+++|+.+++.+|||+|++++
T Consensus 131 ~~d~~~ak~l~~~G~~~vmPlg~pIG-sg--~gi~~~~~i~~i~e~~--~vpVIveaGI~tpeda~~AmelGAdgVlV~S 205 (250)
T PRK00208 131 TDDPVLAKRLEEAGCAAVMPLGAPIG-SG--LGLLNPYNLRIIIEQA--DVPVIVDAGIGTPSDAAQAMELGADAVLLNT 205 (250)
T ss_pred CCCHHHHHHHHHcCCCEeCCCCcCCC-CC--CCCCCHHHHHHHHHhc--CCeEEEeCCCCCHHHHHHHHHcCCCEEEECh
Confidence 46899999999999999955 2112 11 3455667777777654 7999999999999999999999999999999
Q ss_pred HHHH
Q 019244 285 PVVY 288 (344)
Q Consensus 285 ~~l~ 288 (344)
.+..
T Consensus 206 AItk 209 (250)
T PRK00208 206 AIAV 209 (250)
T ss_pred HhhC
Confidence 9864
|
|
| >PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.7e-05 Score=71.08 Aligned_cols=163 Identities=16% Similarity=0.140 Sum_probs=101.3
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEeccCCccccccHHHHHhhcCCCC-cccccccccccccccccccchhhHHHHhhcCCCC
Q 019244 107 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP-FLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 185 (344)
Q Consensus 107 ~d~~~~~~~i~~a~~ag~~~l~~tvd~~~~g~r~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (344)
.+.+.....++.+.++|++.+.+|.++|..-.-.+.++..+ |. -++...+ +..+........+.+..++ +.
T Consensus 13 ~~~~~a~~ia~al~~gGi~~iEit~~tp~a~~~I~~l~~~~--~~~~vGAGTV--l~~e~a~~ai~aGA~FivS----P~ 84 (201)
T PRK06015 13 DDVEHAVPLARALAAGGLPAIEITLRTPAALDAIRAVAAEV--EEAIVGAGTI--LNAKQFEDAAKAGSRFIVS----PG 84 (201)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHC--CCCEEeeEeC--cCHHHHHHHHHcCCCEEEC----CC
Confidence 46677777888888899999999999886433333343333 21 1111111 1100000011112222232 33
Q ss_pred CcHHHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCC
Q 019244 186 LSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 265 (344)
Q Consensus 186 ~~~~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~ 265 (344)
++-+.+++-++ .++|++ -+++|+.++..+.++|++.|+++-.+ .-+|+.- ++.++.-+ ++++++.+|||.
T Consensus 85 ~~~~vi~~a~~-~~i~~i-PG~~TptEi~~A~~~Ga~~vK~FPa~---~~GG~~y---ikal~~pl-p~~~l~ptGGV~- 154 (201)
T PRK06015 85 TTQELLAAAND-SDVPLL-PGAATPSEVMALREEGYTVLKFFPAE---QAGGAAF---LKALSSPL-AGTFFCPTGGIS- 154 (201)
T ss_pred CCHHHHHHHHH-cCCCEe-CCCCCHHHHHHHHHCCCCEEEECCch---hhCCHHH---HHHHHhhC-CCCcEEecCCCC-
Confidence 45556666554 588876 56899999999999999999997421 0012433 44444445 379999999998
Q ss_pred HHHHHHHHHcCCCEEEEchHHH
Q 019244 266 GTDVFKALALGASGIFIGRPVV 287 (344)
Q Consensus 266 g~dv~kalalGAd~V~ig~~~l 287 (344)
..++..++++|+.+++.|+.+.
T Consensus 155 ~~n~~~~l~ag~~~~~ggs~l~ 176 (201)
T PRK06015 155 LKNARDYLSLPNVVCVGGSWVA 176 (201)
T ss_pred HHHHHHHHhCCCeEEEEchhhC
Confidence 5799999999988777776664
|
|
| >cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4 | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.2e-06 Score=83.58 Aligned_cols=102 Identities=21% Similarity=0.203 Sum_probs=72.4
Q ss_pred cHHHHHHHHHhcC------CcEEEEeec--------CHHH----HHHHHHcCCcEEEEccCCCCCC--CCchhhHHHHHH
Q 019244 187 SWKDVKWLQTITK------LPILVKGVL--------TAED----ARIAVQAGAAGIIVSNHGARQL--DYVPATIMALEE 246 (344)
Q Consensus 187 ~~~~i~~i~~~~~------~PvivK~v~--------~~~~----a~~~~~~G~d~I~v~~~gG~~~--~~g~~~~~~l~~ 246 (344)
..+.++.||+.++ .||.+|... +.++ ++.+.++|+|+|.|+....+.. .........+..
T Consensus 197 ~~eii~~vr~~vg~~~~~~~~v~~R~s~~~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~ 276 (353)
T cd04735 197 PLAVVKAVQEVIDKHADKDFILGYRFSPEEPEEPGIRMEDTLALVDKLADKGLDYLHISLWDFDRKSRRGRDDNQTIMEL 276 (353)
T ss_pred HHHHHHHHHHHhccccCCCceEEEEECcccccCCCCCHHHHHHHHHHHHHcCCCEEEeccCccccccccCCcchHHHHHH
Confidence 3467899999875 456666541 3333 5778899999999986432211 111112344455
Q ss_pred HHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 247 VVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 247 i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
+++.+..++|||+.|||++++++.++++.|||+|++||+++.
T Consensus 277 ik~~~~~~iPVi~~Ggi~t~e~ae~~l~~gaD~V~~gR~lia 318 (353)
T cd04735 277 VKERIAGRLPLIAVGSINTPDDALEALETGADLVAIGRGLLV 318 (353)
T ss_pred HHHHhCCCCCEEEECCCCCHHHHHHHHHcCCChHHHhHHHHh
Confidence 555554479999999999999999999999999999999985
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.34 E-value=3.2e-06 Score=75.98 Aligned_cols=119 Identities=25% Similarity=0.356 Sum_probs=87.7
Q ss_pred CCcHHHHHHHHHhcCCcEEEEe-ecCHHHHHHHHHcCCcEEEEc------------------------------------
Q 019244 185 SLSWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVS------------------------------------ 227 (344)
Q Consensus 185 ~~~~~~i~~i~~~~~~PvivK~-v~~~~~a~~~~~~G~d~I~v~------------------------------------ 227 (344)
...++.|+++.+...+|+.|.+ +.+.+|+++++.+|||-|.+-
T Consensus 60 ~~~~~vv~r~A~~vfiPltVGGGI~s~eD~~~ll~aGADKVSINsaAv~~p~lI~~~a~~FGsQciVvaIDakr~~~g~~ 139 (256)
T COG0107 60 ETMLDVVERVAEQVFIPLTVGGGIRSVEDARKLLRAGADKVSINSAAVKDPELITEAADRFGSQCIVVAIDAKRVPDGEN 139 (256)
T ss_pred hhHHHHHHHHHhhceeeeEecCCcCCHHHHHHHHHcCCCeeeeChhHhcChHHHHHHHHHhCCceEEEEEEeeeccCCCC
Confidence 3356678888888899998876 579999999999999977762
Q ss_pred ------cCCCCC---C------------------------CCc--hhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHH
Q 019244 228 ------NHGARQ---L------------------------DYV--PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKA 272 (344)
Q Consensus 228 ------~~gG~~---~------------------------~~g--~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~ka 272 (344)
.|||+. + |+. .-.++.++.+++.+ ++|||+|||..+.+|...+
T Consensus 140 ~~~~v~~~gGr~~t~~d~~~Wa~~~e~~GAGEIlLtsmD~DGtk~GyDl~l~~~v~~~v--~iPvIASGGaG~~ehf~ea 217 (256)
T COG0107 140 GWYEVFTHGGREDTGLDAVEWAKEVEELGAGEILLTSMDRDGTKAGYDLELTRAVREAV--NIPVIASGGAGKPEHFVEA 217 (256)
T ss_pred CcEEEEecCCCcCCCcCHHHHHHHHHHcCCceEEEeeecccccccCcCHHHHHHHHHhC--CCCEEecCCCCcHHHHHHH
Confidence 123331 0 010 01455677777776 8999999999999999999
Q ss_pred HHcC-CCEEEEchHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCC
Q 019244 273 LALG-ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGC 318 (344)
Q Consensus 273 lalG-Ad~V~ig~~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~ 318 (344)
+..| ||++..++-|.|+ + .-..|++..|...|.
T Consensus 218 f~~~~adAaLAAsiFH~~-----~--------~~i~evK~yL~~~gi 251 (256)
T COG0107 218 FTEGKADAALAASIFHFG-----E--------ITIGEVKEYLAEQGI 251 (256)
T ss_pred HHhcCccHHHhhhhhhcC-----c--------ccHHHHHHHHHHcCC
Confidence 9988 9999988888764 2 234566666666654
|
|
| >PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=4.3e-06 Score=77.99 Aligned_cols=76 Identities=24% Similarity=0.270 Sum_probs=61.7
Q ss_pred HHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHH-HcCCCEEEEchHHHHH
Q 019244 211 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKAL-ALGASGIFIGRPVVYS 289 (344)
Q Consensus 211 ~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kal-alGAd~V~ig~~~l~~ 289 (344)
+.++.+.+.|++.+.+.+...-+...| +.++.+.++.+.. ++|||++|||++.+|+.+++ ..|+++|.+|++|.|.
T Consensus 156 e~~~~~~~~g~~~ii~~~i~~~G~~~G-~d~~~i~~~~~~~--~ipvIasGGv~s~eD~~~l~~~~GvdgVivg~a~~~~ 232 (258)
T PRK01033 156 ELAKEYEALGAGEILLNSIDRDGTMKG-YDLELLKSFRNAL--KIPLIALGGAGSLDDIVEAILNLGADAAAAGSLFVFK 232 (258)
T ss_pred HHHHHHHHcCCCEEEEEccCCCCCcCC-CCHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHHHHCCCCEEEEcceeeeC
Confidence 557889999999999864211112233 4788888888775 79999999999999999999 7999999999999883
|
|
| >COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.32 E-value=7.7e-06 Score=73.14 Aligned_cols=166 Identities=20% Similarity=0.202 Sum_probs=105.3
Q ss_pred cCCHHHHHHHHHHHHHcCCcEEEeccCCccccccHHHHHhhcCCCCcccccccccccccccccccchhhHHHHhhcCCCC
Q 019244 106 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 185 (344)
Q Consensus 106 ~~d~~~~~~~i~~a~~ag~~~l~~tvd~~~~g~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (344)
..+.+....+.+..-+.|++++.+|..+|.-..-.+.+++.+. .--++...+ +...........+.+..++| .
T Consensus 21 ~~~~e~a~~~a~Ali~gGi~~IEITl~sp~a~e~I~~l~~~~p-~~lIGAGTV--L~~~q~~~a~~aGa~fiVsP----~ 93 (211)
T COG0800 21 GDDVEEALPLAKALIEGGIPAIEITLRTPAALEAIRALAKEFP-EALIGAGTV--LNPEQARQAIAAGAQFIVSP----G 93 (211)
T ss_pred eCCHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhCc-ccEEccccc--cCHHHHHHHHHcCCCEEECC----C
Confidence 4677888888888899999999999999976655555555432 001111111 11111111111222333333 3
Q ss_pred CcHHHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCC
Q 019244 186 LSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 265 (344)
Q Consensus 186 ~~~~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~ 265 (344)
++-+.++.- ...++|++ -++.|+-++..+.++|++.++++-... -+|+.-+.++. ....+++++.+|||.
T Consensus 94 ~~~ev~~~a-~~~~ip~~-PG~~TptEi~~Ale~G~~~lK~FPa~~---~Gg~~~~ka~~----gP~~~v~~~pTGGVs- 163 (211)
T COG0800 94 LNPEVAKAA-NRYGIPYI-PGVATPTEIMAALELGASALKFFPAEV---VGGPAMLKALA----GPFPQVRFCPTGGVS- 163 (211)
T ss_pred CCHHHHHHH-HhCCCccc-CCCCCHHHHHHHHHcChhheeecCccc---cCcHHHHHHHc----CCCCCCeEeecCCCC-
Confidence 444445544 44588876 578999999999999999999974321 12333322221 112379999999998
Q ss_pred HHHHHHHHHcCCCEEEEchHHHH
Q 019244 266 GTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 266 g~dv~kalalGAd~V~ig~~~l~ 288 (344)
..++..++++|+.+|++|+-+..
T Consensus 164 ~~N~~~yla~gv~avG~Gs~l~~ 186 (211)
T COG0800 164 LDNAADYLAAGVVAVGLGSWLVP 186 (211)
T ss_pred HHHHHHHHhCCceEEecCccccC
Confidence 56999999999999999987763
|
|
| >PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.1e-05 Score=71.79 Aligned_cols=164 Identities=18% Similarity=0.219 Sum_probs=96.0
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEeccCCccccccHHHHHhhcCCCCcccccccccccccccccccchhhHHHHhhcCCCCC
Q 019244 107 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 186 (344)
Q Consensus 107 ~d~~~~~~~i~~a~~ag~~~l~~tvd~~~~g~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (344)
.+++...+.++.+-++|.+.+.++...+..-......+..+ +. .......-+..+........+.+..+. +.+
T Consensus 21 ~~~~~~~~~~~~~~~~Gv~~vqlr~k~~~~~e~~~~~~~~~--~~-~~~g~gtvl~~d~~~~A~~~gAdgv~~----p~~ 93 (187)
T PRK07455 21 PDLELGLQMAEAVAAGGMRLIEITWNSDQPAELISQLREKL--PE-CIIGTGTILTLEDLEEAIAAGAQFCFT----PHV 93 (187)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHhC--CC-cEEeEEEEEcHHHHHHHHHcCCCEEEC----CCC
Confidence 46666777788888888888888877663211112222111 10 000000000000000000000001111 122
Q ss_pred cHHHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCH
Q 019244 187 SWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 266 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g 266 (344)
.- .+...++..+++.++. +.|++++..+.+.|+|+|.+.-.. . ....+.+..++..+ .++|+++.||| +.
T Consensus 94 ~~-~~~~~~~~~~~~~i~G-~~t~~e~~~A~~~Gadyv~~Fpt~---~---~~G~~~l~~~~~~~-~~ipvvaiGGI-~~ 163 (187)
T PRK07455 94 DP-ELIEAAVAQDIPIIPG-ALTPTEIVTAWQAGASCVKVFPVQ---A---VGGADYIKSLQGPL-GHIPLIPTGGV-TL 163 (187)
T ss_pred CH-HHHHHHHHcCCCEEcC-cCCHHHHHHHHHCCCCEEEECcCC---c---ccCHHHHHHHHhhC-CCCcEEEeCCC-CH
Confidence 32 3444555567787765 899999999999999999984321 1 11245566666555 36999999999 58
Q ss_pred HHHHHHHHcCCCEEEEchHHH
Q 019244 267 TDVFKALALGASGIFIGRPVV 287 (344)
Q Consensus 267 ~dv~kalalGAd~V~ig~~~l 287 (344)
+++...++.||++|.+++.++
T Consensus 164 ~n~~~~l~aGa~~vav~s~i~ 184 (187)
T PRK07455 164 ENAQAFIQAGAIAVGLSGQLF 184 (187)
T ss_pred HHHHHHHHCCCeEEEEehhcc
Confidence 999999999999999999875
|
|
| >TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ | Back alignment and domain information |
|---|
Probab=98.29 E-value=7.6e-06 Score=74.93 Aligned_cols=75 Identities=28% Similarity=0.251 Sum_probs=59.5
Q ss_pred HHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHH-HHHcCCCEEEEchHHH
Q 019244 210 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK-ALALGASGIFIGRPVV 287 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~k-alalGAd~V~ig~~~l 287 (344)
.+.++.+.++|+|.|++++....+...| +.++.+.++.+.+ ++||+++|||++.+|+.+ ....||++|++|++|-
T Consensus 156 ~~~~~~~~~~G~d~i~i~~i~~~g~~~g-~~~~~~~~i~~~~--~ipvia~GGi~s~~di~~~l~~~gadgV~vg~a~h 231 (232)
T TIGR03572 156 VEWAREAEQLGAGEILLNSIDRDGTMKG-YDLELIKTVSDAV--SIPVIALGGAGSLDDLVEVALEAGASAVAAASLFH 231 (232)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCcCC-CCHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHHHcCCCEEEEehhhh
Confidence 4667899999999999986321111223 4677888888766 799999999999999999 5569999999999874
|
This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr |
| >PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4 | Back alignment and domain information |
|---|
Probab=98.28 E-value=5.5e-06 Score=73.95 Aligned_cols=165 Identities=19% Similarity=0.269 Sum_probs=97.2
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEeccCCccccccHHHHHhhcCCCC-cccccccccccccccccccchhhHHHHhhcCCCC
Q 019244 107 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP-FLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 185 (344)
Q Consensus 107 ~d~~~~~~~i~~a~~ag~~~l~~tvd~~~~g~r~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (344)
.+.+...++++...+.|++.+.+|..+|..-.-.+.++..+ |. -++...+ +..+........+.+..++ +.
T Consensus 17 ~~~~~a~~~~~al~~gGi~~iEiT~~t~~a~~~I~~l~~~~--p~~~vGAGTV--~~~e~a~~a~~aGA~FivS----P~ 88 (196)
T PF01081_consen 17 DDPEDAVPIAEALIEGGIRAIEITLRTPNALEAIEALRKEF--PDLLVGAGTV--LTAEQAEAAIAAGAQFIVS----PG 88 (196)
T ss_dssp SSGGGHHHHHHHHHHTT--EEEEETTSTTHHHHHHHHHHHH--TTSEEEEES----SHHHHHHHHHHT-SEEEE----SS
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCCccHHHHHHHHHHHC--CCCeeEEEec--cCHHHHHHHHHcCCCEEEC----CC
Confidence 46666777888888899999999999875432223333333 21 1111111 1000000011112222232 34
Q ss_pred CcHHHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCC
Q 019244 186 LSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 265 (344)
Q Consensus 186 ~~~~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~ 265 (344)
++-+.+++-++ .++|++ -+++|+.++..+.++|++.++++-.+- -+|+. .++.++..+ ++++++.+|||.
T Consensus 89 ~~~~v~~~~~~-~~i~~i-PG~~TptEi~~A~~~G~~~vK~FPA~~---~GG~~---~ik~l~~p~-p~~~~~ptGGV~- 158 (196)
T PF01081_consen 89 FDPEVIEYARE-YGIPYI-PGVMTPTEIMQALEAGADIVKLFPAGA---LGGPS---YIKALRGPF-PDLPFMPTGGVN- 158 (196)
T ss_dssp --HHHHHHHHH-HTSEEE-EEESSHHHHHHHHHTT-SEEEETTTTT---TTHHH---HHHHHHTTT-TT-EEEEBSS---
T ss_pred CCHHHHHHHHH-cCCccc-CCcCCHHHHHHHHHCCCCEEEEecchh---cCcHH---HHHHHhccC-CCCeEEEcCCCC-
Confidence 45556666665 488876 568999999999999999999974321 12243 444444444 379999999998
Q ss_pred HHHHHHHHHcCCCEEEEchHHHHH
Q 019244 266 GTDVFKALALGASGIFIGRPVVYS 289 (344)
Q Consensus 266 g~dv~kalalGAd~V~ig~~~l~~ 289 (344)
..++..++++|+.+|++|+.++..
T Consensus 159 ~~N~~~~l~ag~~~vg~Gs~L~~~ 182 (196)
T PF01081_consen 159 PDNLAEYLKAGAVAVGGGSWLFPK 182 (196)
T ss_dssp TTTHHHHHTSTTBSEEEESGGGSH
T ss_pred HHHHHHHHhCCCEEEEECchhcCH
Confidence 489999999999999999988653
|
1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A .... |
| >cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA) | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00012 Score=67.67 Aligned_cols=49 Identities=16% Similarity=0.297 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhh
Q 019244 240 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 291 (344)
Q Consensus 240 ~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~ 291 (344)
..+.+.++++.. ++||.+.|||++.+++.++... ||.+.+|+.++.-+.
T Consensus 175 ~~~~i~~lr~~~--~~pI~vggGI~~~e~~~~~~~~-ADgvVvGSaiv~~~~ 223 (242)
T cd04724 175 LKELIKRIRKYT--DLPIAVGFGISTPEQAAEVAKY-ADGVIVGSALVKIIE 223 (242)
T ss_pred HHHHHHHHHhcC--CCcEEEEccCCCHHHHHHHHcc-CCEEEECHHHHHHHH
Confidence 445666776643 7999999999999999999999 999999999987654
|
TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan. |
| >PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes | Back alignment and domain information |
|---|
Probab=98.25 E-value=1e-05 Score=74.15 Aligned_cols=100 Identities=27% Similarity=0.430 Sum_probs=75.5
Q ss_pred cHHHHHHHHHhcCCcEEEEe-ecCHHHHHHHHHcCCcEEEEccC---------------C------------C-------
Q 019244 187 SWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSNH---------------G------------A------- 231 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~-v~~~~~a~~~~~~G~d~I~v~~~---------------g------------G------- 231 (344)
+++.|+++.+.+++|+.+.+ +.+.++++.+.++|++.++++.. | |
T Consensus 61 n~~~i~~i~~~~~~~i~vgGGIrs~ed~~~ll~~Ga~~Vvigt~~~~~~~~l~~~~~~~g~~~ivvslD~~~g~~v~~~g 140 (229)
T PF00977_consen 61 NLELIKEIAKETGIPIQVGGGIRSIEDAERLLDAGADRVVIGTEALEDPELLEELAERYGSQRIVVSLDARDGYKVATNG 140 (229)
T ss_dssp HHHHHHHHHHHSSSEEEEESSE-SHHHHHHHHHTT-SEEEESHHHHHCCHHHHHHHHHHGGGGEEEEEEEEETEEEEETT
T ss_pred HHHHHHHHHhcCCccEEEeCccCcHHHHHHHHHhCCCEEEeChHHhhchhHHHHHHHHcCcccEEEEEEeeeceEEEecC
Confidence 45678999999999999987 47899999999999999988521 1 1
Q ss_pred -CC---------------------------CCC--chhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEE
Q 019244 232 -RQ---------------------------LDY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIF 281 (344)
Q Consensus 232 -~~---------------------------~~~--g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ 281 (344)
.. .++ ..+.++.+.++++.. ++|+|++|||++.+|+.++...|+++|.
T Consensus 141 w~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~G~d~~~~~~l~~~~--~~~viasGGv~~~~Dl~~l~~~G~~gvi 218 (229)
T PF00977_consen 141 WQESSGIDLEEFAKRLEELGAGEIILTDIDRDGTMQGPDLELLKQLAEAV--NIPVIASGGVRSLEDLRELKKAGIDGVI 218 (229)
T ss_dssp TTEEEEEEHHHHHHHHHHTT-SEEEEEETTTTTTSSS--HHHHHHHHHHH--SSEEEEESS--SHHHHHHHHHTTECEEE
T ss_pred ccccCCcCHHHHHHHHHhcCCcEEEEeeccccCCcCCCCHHHHHHHHHHc--CCCEEEecCCCCHHHHHHHHHCCCcEEE
Confidence 00 011 124567778887776 8999999999999999999999999999
Q ss_pred EchHHHH
Q 019244 282 IGRPVVY 288 (344)
Q Consensus 282 ig~~~l~ 288 (344)
+|++|+.
T Consensus 219 vg~al~~ 225 (229)
T PF00977_consen 219 VGSALHE 225 (229)
T ss_dssp ESHHHHT
T ss_pred EehHhhC
Confidence 9999975
|
Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F .... |
| >PRK14024 phosphoribosyl isomerase A; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=4.6e-06 Score=77.00 Aligned_cols=77 Identities=23% Similarity=0.253 Sum_probs=62.0
Q ss_pred HHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHc---CCCEEEEchHH
Q 019244 210 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL---GASGIFIGRPV 286 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalal---GAd~V~ig~~~ 286 (344)
.+-++.+.+.|++.+++.+...-+...| +.++.+.++.+.. ++|||++|||+|.+|+.+++.+ ||++|++||++
T Consensus 149 ~~~~~~l~~~G~~~iiv~~~~~~g~~~G-~d~~~i~~i~~~~--~ipviasGGi~s~~D~~~l~~~~~~GvdgV~igra~ 225 (241)
T PRK14024 149 WEVLERLDSAGCSRYVVTDVTKDGTLTG-PNLELLREVCART--DAPVVASGGVSSLDDLRALAELVPLGVEGAIVGKAL 225 (241)
T ss_pred HHHHHHHHhcCCCEEEEEeecCCCCccC-CCHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHhhhccCCccEEEEeHHH
Confidence 3557889999999999965322122234 4788899988876 7999999999999999998754 99999999999
Q ss_pred HHH
Q 019244 287 VYS 289 (344)
Q Consensus 287 l~~ 289 (344)
+.+
T Consensus 226 ~~g 228 (241)
T PRK14024 226 YAG 228 (241)
T ss_pred HcC
Confidence 874
|
|
| >PRK13125 trpA tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=5.7e-05 Score=69.86 Aligned_cols=114 Identities=15% Similarity=0.139 Sum_probs=73.5
Q ss_pred HHHHHHhcCCcEEEEee--cCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHH
Q 019244 191 VKWLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 268 (344)
Q Consensus 191 i~~i~~~~~~PvivK~v--~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~d 268 (344)
++.+++ .++..++=.. .+.+..+...+..-..+.++-.||+....-....+.+.++++... +.||+++|||++.++
T Consensus 122 ~~~~~~-~Gl~~~~~v~p~T~~e~l~~~~~~~~~~l~msv~~~~g~~~~~~~~~~i~~lr~~~~-~~~i~v~gGI~~~e~ 199 (244)
T PRK13125 122 VEIIKN-KGLKPVFFTSPKFPDLLIHRLSKLSPLFIYYGLRPATGVPLPVSVERNIKRVRNLVG-NKYLVVGFGLDSPED 199 (244)
T ss_pred HHHHHH-cCCCEEEEECCCCCHHHHHHHHHhCCCEEEEEeCCCCCCCchHHHHHHHHHHHHhcC-CCCEEEeCCcCCHHH
Confidence 444544 3665554332 346778888888777776654444322222333456677766553 578999999999999
Q ss_pred HHHHHHcCCCEEEEchHHHHHhhhcChHHHHHHHHHHH
Q 019244 269 VFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLR 306 (344)
Q Consensus 269 v~kalalGAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~ 306 (344)
+.+++..|||++.+|+.++.-+...+.+...++++.++
T Consensus 200 i~~~~~~gaD~vvvGSai~~~~~~~~~~~~~~~~~~~~ 237 (244)
T PRK13125 200 ARDALSAGADGVVVGTAFIEELEKNGVESALNLLKKIR 237 (244)
T ss_pred HHHHHHcCCCEEEECHHHHHHHHhcCHHHHHHHHHHHH
Confidence 99999999999999999886443333333444444433
|
|
| >cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5 | Back alignment and domain information |
|---|
Probab=98.24 E-value=2.2e-05 Score=76.64 Aligned_cols=101 Identities=18% Similarity=0.157 Sum_probs=73.2
Q ss_pred CCcHHHHHHHHHhc--CCcEEEEeec------------CHHH----HHHHHHcCCcEEEEccCCC-CCCCCchhhHHHHH
Q 019244 185 SLSWKDVKWLQTIT--KLPILVKGVL------------TAED----ARIAVQAGAAGIIVSNHGA-RQLDYVPATIMALE 245 (344)
Q Consensus 185 ~~~~~~i~~i~~~~--~~PvivK~v~------------~~~~----a~~~~~~G~d~I~v~~~gG-~~~~~g~~~~~~l~ 245 (344)
.|..+.|+.||+.+ +.||.+|... ++++ ++.+.++|+|+|.++...- .+...+ .......
T Consensus 195 Rf~~eii~air~~vG~d~~v~vRis~~~~~~~~~~~g~~~~e~~~~~~~l~~~gvd~i~vs~g~~~~~~~~~-~~~~~~~ 273 (361)
T cd04747 195 RFAAEVVKAIRAAVGPDFPIILRFSQWKQQDYTARLADTPDELEALLAPLVDAGVDIFHCSTRRFWEPEFEG-SELNLAG 273 (361)
T ss_pred HHHHHHHHHHHHHcCCCCeEEEEECcccccccccCCCCCHHHHHHHHHHHHHcCCCEEEecCCCccCCCcCc-cchhHHH
Confidence 45678899999998 4899999862 3333 4556899999999975310 111111 1234445
Q ss_pred HHHHHccCCCcEEEecCC------------------CCHHHHHHHHHcC-CCEEEEchHHHH
Q 019244 246 EVVKATQGRIPVFLDGGV------------------RRGTDVFKALALG-ASGIFIGRPVVY 288 (344)
Q Consensus 246 ~i~~~~~~~~~via~GGI------------------r~g~dv~kalalG-Ad~V~ig~~~l~ 288 (344)
.+++.+ ++||++.|+| ++++++.++|.-| ||+|++||+++.
T Consensus 274 ~~k~~~--~~pv~~~G~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~g~~D~V~~gR~~ia 333 (361)
T cd04747 274 WTKKLT--GLPTITVGSVGLDGDFIGAFAGDEGASPASLDRLLERLERGEFDLVAVGRALLS 333 (361)
T ss_pred HHHHHc--CCCEEEECCcccccccccccccccccccCCHHHHHHHHHCCCCCeehhhHHHHh
Confidence 566655 7999999999 5999999999976 999999999975
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.22 E-value=2.3e-05 Score=71.45 Aligned_cols=101 Identities=28% Similarity=0.453 Sum_probs=81.5
Q ss_pred cHHHHHHHHHhcCCcEEEEe-ecCHHHHHHHHHcCCcEEEEccC---------------CCCC-----------------
Q 019244 187 SWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSNH---------------GARQ----------------- 233 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~-v~~~~~a~~~~~~G~d~I~v~~~---------------gG~~----------------- 233 (344)
+.+.+++|.+.+++||-+.+ +.+.++++.+.++|++.++++.. |++-
T Consensus 63 n~~~i~~i~~~~~~~vQvGGGIRs~~~v~~ll~~G~~rViiGt~av~~p~~v~~~~~~~g~rivv~lD~r~g~vav~GW~ 142 (241)
T COG0106 63 NLEAIKEILEATDVPVQVGGGIRSLEDVEALLDAGVARVIIGTAAVKNPDLVKELCEEYGDRIVVALDARDGKVAVSGWQ 142 (241)
T ss_pred cHHHHHHHHHhCCCCEEeeCCcCCHHHHHHHHHCCCCEEEEecceecCHHHHHHHHHHcCCcEEEEEEccCCcccccccc
Confidence 56789999999999998876 57899999999999999988632 2210
Q ss_pred ----------------------------CCC--chhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHc-CCCEEEE
Q 019244 234 ----------------------------LDY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL-GASGIFI 282 (344)
Q Consensus 234 ----------------------------~~~--g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalal-GAd~V~i 282 (344)
.|+ .-+..+.+.++.+++ ++|+++||||+|-.|+..+..+ |...|.+
T Consensus 143 e~s~~~~~~l~~~~~~~g~~~ii~TdI~~DGtl~G~n~~l~~~l~~~~--~ipviaSGGv~s~~Di~~l~~~~G~~GvIv 220 (241)
T COG0106 143 EDSGVELEELAKRLEEVGLAHILYTDISRDGTLSGPNVDLVKELAEAV--DIPVIASGGVSSLDDIKALKELSGVEGVIV 220 (241)
T ss_pred ccccCCHHHHHHHHHhcCCCeEEEEecccccccCCCCHHHHHHHHHHh--CcCEEEecCcCCHHHHHHHHhcCCCcEEEE
Confidence 011 235677788888887 8999999999999999988889 9999999
Q ss_pred chHHHHH
Q 019244 283 GRPVVYS 289 (344)
Q Consensus 283 g~~~l~~ 289 (344)
|++++.+
T Consensus 221 G~ALy~g 227 (241)
T COG0106 221 GRALYEG 227 (241)
T ss_pred ehHHhcC
Confidence 9999863
|
|
| >PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences | Back alignment and domain information |
|---|
Probab=98.22 E-value=8.9e-06 Score=73.59 Aligned_cols=78 Identities=18% Similarity=0.283 Sum_probs=57.2
Q ss_pred ecCHHHHHHHHHcCCcEEEEccCC-CCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchH
Q 019244 207 VLTAEDARIAVQAGAAGIIVSNHG-ARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 285 (344)
Q Consensus 207 v~~~~~a~~~~~~G~d~I~v~~~g-G~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~ 285 (344)
..++-.++++.++|+..|---+.. |+ ..|..+...|..+++.. ++|||.|+||.+++|+.+++.||||+|.+-++
T Consensus 131 ~~D~v~akrL~d~GcaavMPlgsPIGS--g~Gi~n~~~l~~i~~~~--~vPvIvDAGiG~pSdaa~AMElG~daVLvNTA 206 (247)
T PF05690_consen 131 TDDPVLAKRLEDAGCAAVMPLGSPIGS--GRGIQNPYNLRIIIERA--DVPVIVDAGIGTPSDAAQAMELGADAVLVNTA 206 (247)
T ss_dssp -S-HHHHHHHHHTT-SEBEEBSSSTTT-----SSTHHHHHHHHHHG--SSSBEEES---SHHHHHHHHHTT-SEEEESHH
T ss_pred CCCHHHHHHHHHCCCCEEEeccccccc--CcCCCCHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHHcCCceeehhhH
Confidence 357788999999999999765432 22 13556678888888777 89999999999999999999999999999998
Q ss_pred HHH
Q 019244 286 VVY 288 (344)
Q Consensus 286 ~l~ 288 (344)
+..
T Consensus 207 iA~ 209 (247)
T PF05690_consen 207 IAK 209 (247)
T ss_dssp HHT
T ss_pred Hhc
Confidence 754
|
ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C. |
| >cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain | Back alignment and domain information |
|---|
Probab=98.20 E-value=3.2e-05 Score=75.42 Aligned_cols=102 Identities=22% Similarity=0.183 Sum_probs=73.8
Q ss_pred CCcHHHHHHHHHhcC--CcEEEEee--------cCHHH----HHHHHHcCCcEEEEcc--CCCCCCC----Cchh-hHHH
Q 019244 185 SLSWKDVKWLQTITK--LPILVKGV--------LTAED----ARIAVQAGAAGIIVSN--HGARQLD----YVPA-TIMA 243 (344)
Q Consensus 185 ~~~~~~i~~i~~~~~--~PvivK~v--------~~~~~----a~~~~~~G~d~I~v~~--~gG~~~~----~g~~-~~~~ 243 (344)
.+..+.++.+|+.++ .||.+|.. .+.++ ++.+.++|+|+|.|+. +..+... .... ....
T Consensus 188 r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~~g~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~ 267 (353)
T cd02930 188 RFPVEIVRAVRAAVGEDFIIIYRLSMLDLVEGGSTWEEVVALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWA 267 (353)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHH
Confidence 445678999999985 56666664 24443 5678899999999974 2222110 1111 2344
Q ss_pred HHHHHHHccCCCcEEEecCCCCHHHHHHHHHcC-CCEEEEchHHHH
Q 019244 244 LEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 288 (344)
Q Consensus 244 l~~i~~~~~~~~~via~GGIr~g~dv~kalalG-Ad~V~ig~~~l~ 288 (344)
..++++.+ ++||++.|++++..++.++++.| +|+|++||+++.
T Consensus 268 ~~~ik~~v--~iPVi~~G~i~~~~~a~~~i~~g~~D~V~~gR~~l~ 311 (353)
T cd02930 268 TAKLKRAV--DIPVIASNRINTPEVAERLLADGDADMVSMARPFLA 311 (353)
T ss_pred HHHHHHhC--CCCEEEcCCCCCHHHHHHHHHCCCCChhHhhHHHHH
Confidence 56677766 79999999999999999999987 999999999975
|
DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi |
| >PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.7e-05 Score=83.36 Aligned_cols=101 Identities=21% Similarity=0.183 Sum_probs=74.5
Q ss_pred CCcHHHHHHHHHhc--CCcEEEEeec--------CHHH----HHHHHHcCCcEEEEccCCCCCC----CCch-hhHHHHH
Q 019244 185 SLSWKDVKWLQTIT--KLPILVKGVL--------TAED----ARIAVQAGAAGIIVSNHGARQL----DYVP-ATIMALE 245 (344)
Q Consensus 185 ~~~~~~i~~i~~~~--~~PvivK~v~--------~~~~----a~~~~~~G~d~I~v~~~gG~~~----~~g~-~~~~~l~ 245 (344)
.|..+.++.||+.+ +.||.+|+.. +.++ ++.+.++|+|.|.|+.. ++.. ..++ .......
T Consensus 602 r~~~eiv~~ir~~~~~~~~v~~ri~~~~~~~~g~~~~~~~~~~~~l~~~g~d~i~vs~g-~~~~~~~~~~~~~~~~~~~~ 680 (765)
T PRK08255 602 RYPLEVFRAVRAVWPAEKPMSVRISAHDWVEGGNTPDDAVEIARAFKAAGADLIDVSSG-QVSKDEKPVYGRMYQTPFAD 680 (765)
T ss_pred HHHHHHHHHHHHhcCCCCeeEEEEccccccCCCCCHHHHHHHHHHHHhcCCcEEEeCCC-CCCcCCCCCcCccccHHHHH
Confidence 34567899999987 4899999862 2333 57788999999999742 2110 1111 1123345
Q ss_pred HHHHHccCCCcEEEecCCCCHHHHHHHHHcC-CCEEEEchHHHH
Q 019244 246 EVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 288 (344)
Q Consensus 246 ~i~~~~~~~~~via~GGIr~g~dv~kalalG-Ad~V~ig~~~l~ 288 (344)
++++.+ ++||++.|+|++++++.++|+.| ||+|++||+++.
T Consensus 681 ~ik~~~--~~pv~~~G~i~~~~~a~~~l~~g~~D~v~~gR~~l~ 722 (765)
T PRK08255 681 RIRNEA--GIATIAVGAISEADHVNSIIAAGRADLCALARPHLA 722 (765)
T ss_pred HHHHHc--CCEEEEeCCCCCHHHHHHHHHcCCcceeeEcHHHHh
Confidence 666666 79999999999999999999976 999999999985
|
|
| >PRK05283 deoxyribose-phosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.6e-06 Score=78.86 Aligned_cols=94 Identities=28% Similarity=0.275 Sum_probs=64.5
Q ss_pred HHHHHHHHHhcCCcEEEEee-----cCHHH-----HHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHc-----c
Q 019244 188 WKDVKWLQTITKLPILVKGV-----LTAED-----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT-----Q 252 (344)
Q Consensus 188 ~~~i~~i~~~~~~PvivK~v-----~~~~~-----a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~-----~ 252 (344)
.++|+++++..+-++.+|.+ ++.++ .+.+.++|+|+|..|+.-+ .+..+.+.+.-+++.+ +
T Consensus 118 ~~ei~~v~~~~~~~~~lKVIlEt~~L~~ee~i~~a~~~a~~aGADFVKTSTGf~----~~gAt~edv~lm~~~i~~~~~~ 193 (257)
T PRK05283 118 FELVKACKEACAANVLLKVIIETGELKDEALIRKASEIAIKAGADFIKTSTGKV----PVNATLEAARIMLEVIRDMGVA 193 (257)
T ss_pred HHHHHHHHHHhCCCceEEEEEeccccCCHHHHHHHHHHHHHhCCCEEEcCCCCC----CCCCCHHHHHHHHHHHHhcccC
Confidence 35688888876434777876 44442 3568899999999986321 1224455444444443 3
Q ss_pred CCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHH
Q 019244 253 GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 287 (344)
Q Consensus 253 ~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l 287 (344)
+++.|-++|||||..++.+.+.+|.+.. |.-|+
T Consensus 194 ~~vgIKAsGGIrt~~~A~~~i~ag~~~l--g~~~~ 226 (257)
T PRK05283 194 KTVGFKPAGGVRTAEDAAQYLALADEIL--GADWA 226 (257)
T ss_pred CCeeEEccCCCCCHHHHHHHHHHHHHHh--Chhhc
Confidence 5799999999999999999999998753 44443
|
|
| >PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.4e-05 Score=74.16 Aligned_cols=75 Identities=19% Similarity=0.244 Sum_probs=60.6
Q ss_pred HHHHHHHHHcCCcEEEEccCC--CCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHc-CCCEEEEchHH
Q 019244 210 AEDARIAVQAGAAGIIVSNHG--ARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL-GASGIFIGRPV 286 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~~g--G~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalal-GAd~V~ig~~~ 286 (344)
.+.++.+.+.|++.+.+.+.. |+ ..| +.++.+.++.+.. ++|||++|||++.+|+.+++.. ||++|++|+.+
T Consensus 156 ~~~~~~~~~~g~~~ii~~~i~~~g~--~~g-~d~~~i~~~~~~~--~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al 230 (253)
T PRK02083 156 VEWAKEVEELGAGEILLTSMDRDGT--KNG-YDLELTRAVSDAV--NVPVIASGGAGNLEHFVEAFTEGGADAALAASIF 230 (253)
T ss_pred HHHHHHHHHcCCCEEEEcCCcCCCC--CCC-cCHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHH
Confidence 355788999999999886633 32 122 3577888888766 7999999999999999999975 99999999999
Q ss_pred HHH
Q 019244 287 VYS 289 (344)
Q Consensus 287 l~~ 289 (344)
.++
T Consensus 231 ~~~ 233 (253)
T PRK02083 231 HFG 233 (253)
T ss_pred HcC
Confidence 864
|
|
| >cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=98.16 E-value=2.6e-05 Score=71.61 Aligned_cols=101 Identities=29% Similarity=0.371 Sum_probs=76.4
Q ss_pred cHHHHHHHHHhcCCcEEEEe-ecCHHHHHHHHHcCCcEEEEcc--------------CCC-CC---CC--C---------
Q 019244 187 SWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSN--------------HGA-RQ---LD--Y--------- 236 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~-v~~~~~a~~~~~~G~d~I~v~~--------------~gG-~~---~~--~--------- 236 (344)
+.+.++.+.+.+.+|+.+.+ +.+.++++.+.++|++.+++.. .|. +- +| .
T Consensus 66 n~~~i~~i~~~~~~~v~vgGGir~~edv~~~l~~Ga~~viigt~~~~~~~~~~~~~~~~~~~iivslD~~~~~~~~~~~~ 145 (233)
T cd04723 66 NDEAIRELAAAWPLGLWVDGGIRSLENAQEWLKRGASRVIVGTETLPSDDDEDRLAALGEQRLVLSLDFRGGQLLKPTDF 145 (233)
T ss_pred cHHHHHHHHHhCCCCEEEecCcCCHHHHHHHHHcCCCeEEEcceeccchHHHHHHHhcCCCCeEEEEeccCCeeccccCc
Confidence 56788888888889998876 4788999999999999988754 122 10 00 0
Q ss_pred ----------------------------chhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 237 ----------------------------VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 237 ----------------------------g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
..+..+.+.++.+.. .+||+++|||+|.+|+.+++.+||+.|.+|++++.
T Consensus 146 ~~~~~~~~~~~~~~~~li~~di~~~G~~~g~~~~~~~~i~~~~--~ipvi~~GGi~s~edi~~l~~~G~~~vivGsal~~ 223 (233)
T cd04723 146 IGPEELLRRLAKWPEELIVLDIDRVGSGQGPDLELLERLAARA--DIPVIAAGGVRSVEDLELLKKLGASGALVASALHD 223 (233)
T ss_pred CCHHHHHHHHHHhCCeEEEEEcCccccCCCcCHHHHHHHHHhc--CCCEEEeCCCCCHHHHHHHHHcCCCEEEEehHHHc
Confidence 012234455555543 79999999999999999999999999999999876
Q ss_pred H
Q 019244 289 S 289 (344)
Q Consensus 289 ~ 289 (344)
+
T Consensus 224 g 224 (233)
T cd04723 224 G 224 (233)
T ss_pred C
Confidence 4
|
The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl |
| >PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed | Back alignment and domain information |
|---|
Probab=98.16 E-value=4.3e-05 Score=68.60 Aligned_cols=79 Identities=28% Similarity=0.356 Sum_probs=59.8
Q ss_pred cCHHHHHHHHHcCCcEEEEccC--CCCCCCCc-hhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEch
Q 019244 208 LTAEDARIAVQAGAAGIIVSNH--GARQLDYV-PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 284 (344)
Q Consensus 208 ~~~~~a~~~~~~G~d~I~v~~~--gG~~~~~g-~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~ 284 (344)
.|++++..+.+.|+|+|.++.. +++..... +..++.+.++++.. .++||++.||| +..++.+++++||++|.+|+
T Consensus 112 ~t~~e~~~a~~~gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~v~a~GGI-~~~~i~~~~~~Ga~gv~~gs 189 (212)
T PRK00043 112 HTLEEAAAALAAGADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAV-GDIPIVAIGGI-TPENAPEVLEAGADGVAVVS 189 (212)
T ss_pred CCHHHHHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhc-CCCCEEEECCc-CHHHHHHHHHcCCCEEEEeH
Confidence 5788999999999999998642 11111111 12367777777665 24999999999 68999999999999999999
Q ss_pred HHHH
Q 019244 285 PVVY 288 (344)
Q Consensus 285 ~~l~ 288 (344)
.++.
T Consensus 190 ~i~~ 193 (212)
T PRK00043 190 AITG 193 (212)
T ss_pred Hhhc
Confidence 8764
|
|
| >PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4 | Back alignment and domain information |
|---|
Probab=98.15 E-value=2.8e-05 Score=72.20 Aligned_cols=159 Identities=21% Similarity=0.261 Sum_probs=90.7
Q ss_pred HHHHHHHHcCCcEEEeccCCccccccHHHHHh---hcCCCCcccccccccccccccccccchhhHHHHhhcCCCC--Cc-
Q 019244 114 QLVRRAERAGFKAIALTVDTPRLGRREADIKN---RFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS--LS- 187 (344)
Q Consensus 114 ~~i~~a~~ag~~~l~~tvd~~~~g~r~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~- 187 (344)
++.+..+++|+.++.|-.|...|+-...+++. ...+|. +..+. ...+.|-+.......+ +-
T Consensus 72 ~~a~~y~~~GA~aiSVlTe~~~F~Gs~~dL~~v~~~~~~Pv---------L~KDF----Iid~~QI~eA~~~GADaVLLI 138 (254)
T PF00218_consen 72 EIAKAYEEAGAAAISVLTEPKFFGGSLEDLRAVRKAVDLPV---------LRKDF----IIDPYQIYEARAAGADAVLLI 138 (254)
T ss_dssp HHHHHHHHTT-SEEEEE--SCCCHHHHHHHHHHHHHSSS-E---------EEES-------SHHHHHHHHHTT-SEEEEE
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCCCHHHHHHHHHHhCCCc---------ccccC----CCCHHHHHHHHHcCCCEeehh
Confidence 44556677888888888887777655555442 222221 00000 1112222222211222 21
Q ss_pred -----HHHHHHHH---HhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEE
Q 019244 188 -----WKDVKWLQ---TITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 259 (344)
Q Consensus 188 -----~~~i~~i~---~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via 259 (344)
.+.++++. ...++-++| ++-+.++++++.++|++.|-|-|.--..+ ...+....++...++.++.+|+
T Consensus 139 ~~~L~~~~l~~l~~~a~~lGle~lV-EVh~~~El~~al~~~a~iiGINnRdL~tf---~vd~~~~~~l~~~ip~~~~~is 214 (254)
T PF00218_consen 139 AAILSDDQLEELLELAHSLGLEALV-EVHNEEELERALEAGADIIGINNRDLKTF---EVDLNRTEELAPLIPKDVIVIS 214 (254)
T ss_dssp GGGSGHHHHHHHHHHHHHTT-EEEE-EESSHHHHHHHHHTT-SEEEEESBCTTTC---CBHTHHHHHHHCHSHTTSEEEE
T ss_pred HHhCCHHHHHHHHHHHHHcCCCeEE-EECCHHHHHHHHHcCCCEEEEeCccccCc---ccChHHHHHHHhhCccceeEEe
Confidence 12334433 344666655 57888999999999999888876432222 2223333455555566788999
Q ss_pred ecCCCCHHHHHHHHHcCCCEEEEchHHHHH
Q 019244 260 DGGVRRGTDVFKALALGASGIFIGRPVVYS 289 (344)
Q Consensus 260 ~GGIr~g~dv~kalalGAd~V~ig~~~l~~ 289 (344)
.+||.+.+|+.+....|+|+|.||+.+|.+
T Consensus 215 eSGI~~~~d~~~l~~~G~davLVGe~lm~~ 244 (254)
T PF00218_consen 215 ESGIKTPEDARRLARAGADAVLVGEALMRS 244 (254)
T ss_dssp ESS-SSHHHHHHHCTTT-SEEEESHHHHTS
T ss_pred ecCCCCHHHHHHHHHCCCCEEEECHHHhCC
Confidence 999999999999999999999999999864
|
1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A .... |
| >PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated | Back alignment and domain information |
|---|
Probab=98.15 E-value=1e-05 Score=73.91 Aligned_cols=77 Identities=26% Similarity=0.334 Sum_probs=60.9
Q ss_pred HHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcC-CCEEEEchHHHH
Q 019244 210 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 288 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalG-Ad~V~ig~~~l~ 288 (344)
.+.++.+.+.|++.|.+.....-+...| +.++.+.++.+.. ++|||++|||++.+|+.+++..| |++|++|+.+++
T Consensus 149 ~e~~~~~~~~g~~~ii~~~~~~~g~~~G-~d~~~i~~l~~~~--~ipvia~GGi~~~~di~~~~~~g~~~gv~vg~a~~~ 225 (233)
T PRK00748 149 EDLAKRFEDAGVKAIIYTDISRDGTLSG-PNVEATRELAAAV--PIPVIASGGVSSLDDIKALKGLGAVEGVIVGRALYE 225 (233)
T ss_pred HHHHHHHHhcCCCEEEEeeecCcCCcCC-CCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCccEEEEEHHHHc
Confidence 4557888899999887753211111234 5778888888776 69999999999999999999998 999999999987
Q ss_pred H
Q 019244 289 S 289 (344)
Q Consensus 289 ~ 289 (344)
+
T Consensus 226 ~ 226 (233)
T PRK00748 226 G 226 (233)
T ss_pred C
Confidence 4
|
|
| >TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.7e-05 Score=73.86 Aligned_cols=75 Identities=21% Similarity=0.323 Sum_probs=60.9
Q ss_pred HHHHHHHHHcCCcEEEEccC--CCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcC-CCEEEEchHH
Q 019244 210 AEDARIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPV 286 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~~--gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalG-Ad~V~ig~~~ 286 (344)
.+.++.+.++|++.|.+++. .|+ ...+.++.+.++++.. ++|||++|||++.+|+.+++..| |++|++|+.+
T Consensus 158 ~~~~~~l~~~G~~~iivt~i~~~g~---~~g~~~~~~~~i~~~~--~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~ 232 (254)
T TIGR00735 158 VEWAKEVEKLGAGEILLTSMDKDGT---KSGYDLELTKAVSEAV--KIPVIASGGAGKPEHFYEAFTKGKADAALAASVF 232 (254)
T ss_pred HHHHHHHHHcCCCEEEEeCcCcccC---CCCCCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHH
Confidence 35578899999999999652 121 2235677788888776 79999999999999999999998 9999999998
Q ss_pred HHH
Q 019244 287 VYS 289 (344)
Q Consensus 287 l~~ 289 (344)
+++
T Consensus 233 ~~~ 235 (254)
T TIGR00735 233 HYR 235 (254)
T ss_pred hCC
Confidence 753
|
|
| >PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=3.2e-05 Score=70.87 Aligned_cols=102 Identities=26% Similarity=0.322 Sum_probs=73.6
Q ss_pred cHHHHHHHHHhcCCcEEEEe-ecCHHHHHHHHHcCCcEEEEccCC-------------CCC---CC----------C---
Q 019244 187 SWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSNHG-------------ARQ---LD----------Y--- 236 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~-v~~~~~a~~~~~~G~d~I~v~~~g-------------G~~---~~----------~--- 236 (344)
+++.++++.+.+++||++.+ +.+.++++++.+.|++.+++...- |.- +| |
T Consensus 61 n~~~i~~i~~~~~~pv~~gGGIrs~edv~~l~~~G~~~vivGtaa~~~~~l~~~~~~~g~ivvslD~~~g~v~~~gw~~~ 140 (228)
T PRK04128 61 NLDVVKNIIRETGLKVQVGGGLRTYESIKDAYEIGVENVIIGTKAFDLEFLEKVTSEFEGITVSLDVKGGRIAVKGWLEE 140 (228)
T ss_pred hHHHHHHHHhhCCCCEEEcCCCCCHHHHHHHHHCCCCEEEECchhcCHHHHHHHHHHcCCEEEEEEccCCeEecCCCeEc
Confidence 56778888888889998875 578999999999999998885310 100 00 1
Q ss_pred -chhhHHHHHH------------------------HHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHH
Q 019244 237 -VPATIMALEE------------------------VVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 289 (344)
Q Consensus 237 -g~~~~~~l~~------------------------i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~ 289 (344)
.....+.+.+ +.+.. .++|||++|||++.+|+.++..+|+++|.+|++|+++
T Consensus 141 ~~~~~~~~~~~~~~~~~~ii~t~i~~dGt~~G~d~l~~~~-~~~pviasGGv~~~~Dl~~l~~~g~~gvivg~al~~g 217 (228)
T PRK04128 141 SSIKVEDAYEMLKNYVNRFIYTSIERDGTLTGIEEIERFW-GDEEFIYAGGVSSAEDVKKLAEIGFSGVIIGKALYEG 217 (228)
T ss_pred CCCCHHHHHHHHHHHhCEEEEEeccchhcccCHHHHHHhc-CCCCEEEECCCCCHHHHHHHHHCCCCEEEEEhhhhcC
Confidence 1111222221 22221 2699999999999999999999999999999999764
|
|
| >CHL00162 thiG thiamin biosynthesis protein G; Validated | Back alignment and domain information |
|---|
Probab=98.08 E-value=2.1e-05 Score=71.99 Aligned_cols=79 Identities=20% Similarity=0.355 Sum_probs=63.3
Q ss_pred ecCHHHHHHHHHcCCcEEEEccCC-CCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchH
Q 019244 207 VLTAEDARIAVQAGAAGIIVSNHG-ARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 285 (344)
Q Consensus 207 v~~~~~a~~~~~~G~d~I~v~~~g-G~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~ 285 (344)
..++-.++++.++|+..|---+.. |+ ..|..+...|.-+++.. ++||+.++||.+++|+.+++.+|||+|++.+.
T Consensus 145 ~~D~v~a~rLed~Gc~aVMPlgsPIGS--g~Gl~n~~~l~~i~e~~--~vpVivdAGIgt~sDa~~AmElGaDgVL~nSa 220 (267)
T CHL00162 145 NADPMLAKHLEDIGCATVMPLGSPIGS--GQGLQNLLNLQIIIENA--KIPVIIDAGIGTPSEASQAMELGASGVLLNTA 220 (267)
T ss_pred CCCHHHHHHHHHcCCeEEeeccCcccC--CCCCCCHHHHHHHHHcC--CCcEEEeCCcCCHHHHHHHHHcCCCEEeecce
Confidence 356788999999999999764421 21 13556677777777654 79999999999999999999999999999998
Q ss_pred HHHH
Q 019244 286 VVYS 289 (344)
Q Consensus 286 ~l~~ 289 (344)
+..+
T Consensus 221 IakA 224 (267)
T CHL00162 221 VAQA 224 (267)
T ss_pred eecC
Confidence 8753
|
|
| >PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=5.8e-05 Score=70.80 Aligned_cols=89 Identities=16% Similarity=0.151 Sum_probs=70.2
Q ss_pred HHHHHHHHHhcC-CcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHcc---CCCcEEEecCC
Q 019244 188 WKDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ---GRIPVFLDGGV 263 (344)
Q Consensus 188 ~~~i~~i~~~~~-~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~---~~~~via~GGI 263 (344)
.+.++++++..+ ...|.=++.+.|+++.+.++|+|.|-++|. +.+.+.++.+..+ .++.+.++|||
T Consensus 169 ~~~v~~~k~~~p~~~~I~VEv~tleea~~A~~~GaDiI~LDn~----------~~e~l~~~v~~~~~~~~~~~ieAsGgI 238 (273)
T PRK05848 169 KEFIQHARKNIPFTAKIEIECESLEEAKNAMNAGADIVMCDNM----------SVEEIKEVVAYRNANYPHVLLEASGNI 238 (273)
T ss_pred HHHHHHHHHhCCCCceEEEEeCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhhccCCCeEEEEECCC
Confidence 346888888775 233444788999999999999999988763 3455555555433 36779999999
Q ss_pred CCHHHHHHHHHcCCCEEEEchHHH
Q 019244 264 RRGTDVFKALALGASGIFIGRPVV 287 (344)
Q Consensus 264 r~g~dv~kalalGAd~V~ig~~~l 287 (344)
+.+.+.++..+|+|.+.+|+++.
T Consensus 239 -t~~ni~~ya~~GvD~IsvG~l~~ 261 (273)
T PRK05848 239 -TLENINAYAKSGVDAISSGSLIH 261 (273)
T ss_pred -CHHHHHHHHHcCCCEEEeChhhc
Confidence 99999999999999999999765
|
|
| >cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=98.04 E-value=4.2e-05 Score=70.52 Aligned_cols=76 Identities=24% Similarity=0.275 Sum_probs=61.2
Q ss_pred HHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 210 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
.+-++.+.++|++.+.+.+-.+- ....++.++.+.++++.+ ++||+++|||++.+|+.+++..||+.|++|+.++.
T Consensus 30 ~~~a~~~~~~G~~~i~i~d~~~~-~~~~~~~~~~i~~i~~~~--~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig~~~~~ 105 (243)
T cd04731 30 VELAKRYNEQGADELVFLDITAS-SEGRETMLDVVERVAEEV--FIPLTVGGGIRSLEDARRLLRAGADKVSINSAAVE 105 (243)
T ss_pred HHHHHHHHHCCCCEEEEEcCCcc-cccCcccHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCceEEECchhhh
Confidence 36688899999998888653211 112345677888888776 69999999999999999999999999999998875
|
Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria. |
| >PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=6.1e-05 Score=69.56 Aligned_cols=100 Identities=18% Similarity=0.270 Sum_probs=74.5
Q ss_pred cHHHHHHHHHhcCCcEEEEe-ecCHHHHHHHHHcCCcEEEEccC--------------CCC------------------C
Q 019244 187 SWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSNH--------------GAR------------------Q 233 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~-v~~~~~a~~~~~~G~d~I~v~~~--------------gG~------------------~ 233 (344)
+++.|++|.+.+ .|+.+.+ +.+.++++.+.++|++.+++.+. |.+ .
T Consensus 62 n~~~i~~i~~~~-~~v~vGGGIrs~e~~~~~l~~Ga~rvvigT~a~~~p~~l~~~~~~~~~ivvslD~k~g~v~~~gw~~ 140 (241)
T PRK14114 62 NLPVLEKLSEFA-EHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVLEDPSFLKFLKEIDVEPVFSLDTRGGKVAFKGWLA 140 (241)
T ss_pred hHHHHHHHHhhc-CcEEEecCCCCHHHHHHHHHCCCCEEEECchhhCCHHHHHHHHHhCCCEEEEEEccCCEEeeCCCee
Confidence 566788888776 6888766 46788899999999988877531 110 0
Q ss_pred ---C------------------------CC--chhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHc-----C-CC
Q 019244 234 ---L------------------------DY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL-----G-AS 278 (344)
Q Consensus 234 ---~------------------------~~--g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalal-----G-Ad 278 (344)
. |+ .-+.++.+.++++.. ++|||++|||+|.+|+.++..+ | ++
T Consensus 141 ~~~~~~~e~~~~~~~~g~~~ii~tdI~rdGt~~G~d~el~~~l~~~~--~~pviasGGv~s~~Dl~~l~~~~~~~~g~v~ 218 (241)
T PRK14114 141 EEEIDPVSLLKRLKEYGLEEIVHTEIEKDGTLQEHDFSLTRKIAIEA--EVKVFAAGGISSENSLKTAQRVHRETNGLLK 218 (241)
T ss_pred cCCCCHHHHHHHHHhcCCCEEEEEeechhhcCCCcCHHHHHHHHHHC--CCCEEEECCCCCHHHHHHHHhcccccCCcEE
Confidence 0 01 124566777776664 7999999999999999999987 6 99
Q ss_pred EEEEchHHHHH
Q 019244 279 GIFIGRPVVYS 289 (344)
Q Consensus 279 ~V~ig~~~l~~ 289 (344)
+|.+|++++.+
T Consensus 219 gvivg~Al~~g 229 (241)
T PRK14114 219 GVIVGRAFLEG 229 (241)
T ss_pred EEEEehHHHCC
Confidence 99999998763
|
|
| >COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.01 E-value=5.6e-05 Score=73.77 Aligned_cols=99 Identities=27% Similarity=0.308 Sum_probs=72.2
Q ss_pred HHHHHHHHHhcC--CcEEEEeec---------CH----HHHHHHHHcC-CcEEEEccCCCC---CCCCchh--hHHHHHH
Q 019244 188 WKDVKWLQTITK--LPILVKGVL---------TA----EDARIAVQAG-AAGIIVSNHGAR---QLDYVPA--TIMALEE 246 (344)
Q Consensus 188 ~~~i~~i~~~~~--~PvivK~v~---------~~----~~a~~~~~~G-~d~I~v~~~gG~---~~~~g~~--~~~~l~~ 246 (344)
.+.++.+|+.++ .||.++... +. +.++.+.+.| +|.|.+++.+-. ......+ .......
T Consensus 203 ~EVv~aVr~~vg~~~~vg~Rls~~d~~~~~g~~~~e~~~la~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~~a~~ 282 (363)
T COG1902 203 LEVVDAVREAVGADFPVGVRLSPDDFFDGGGLTIEEAVELAKALEEAGLVDYIHVSEGGYERGGTITVSGPGYQVEFAAR 282 (363)
T ss_pred HHHHHHHHHHhCCCceEEEEECccccCCCCCCCHHHHHHHHHHHHhcCCccEEEeecccccCCCCccccccchhHHHHHH
Confidence 467999999995 589999862 22 3367889999 799999863321 1111111 1123334
Q ss_pred HHHHccCCCcEEEecCCCCHHHHHHHHHcC-CCEEEEchHHHH
Q 019244 247 VVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 288 (344)
Q Consensus 247 i~~~~~~~~~via~GGIr~g~dv~kalalG-Ad~V~ig~~~l~ 288 (344)
++... .+|+|++|+|+++..+.+.|+-| ||+|.+||+|+.
T Consensus 283 i~~~~--~~pvi~~G~i~~~~~Ae~~l~~g~aDlVa~gR~~la 323 (363)
T COG1902 283 IKKAV--RIPVIAVGGINDPEQAEEILASGRADLVAMGRPFLA 323 (363)
T ss_pred HHHhc--CCCEEEeCCCCCHHHHHHHHHcCCCCEEEechhhhc
Confidence 54444 59999999999999999999998 999999999985
|
|
| >cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00017 Score=70.85 Aligned_cols=102 Identities=10% Similarity=-0.005 Sum_probs=70.1
Q ss_pred CCCcHHHHHHHHHhcC--CcEEEEee----------cCHHHH----HHHHHcCCcEEEEccCC----CCCCCC--chhhH
Q 019244 184 RSLSWKDVKWLQTITK--LPILVKGV----------LTAEDA----RIAVQAGAAGIIVSNHG----ARQLDY--VPATI 241 (344)
Q Consensus 184 ~~~~~~~i~~i~~~~~--~PvivK~v----------~~~~~a----~~~~~~G~d~I~v~~~g----G~~~~~--g~~~~ 241 (344)
..|..+.++.||+.++ .||.+|.. .+.+++ +.+.+ .+|.+.++... +..... ....+
T Consensus 200 ~Rf~~eii~aIr~~vg~~~~v~vRls~~~~~~~~g~~~~~e~~~~~~~l~~-~~D~i~vs~g~~~~~~~~~~~~~~~~~~ 278 (370)
T cd02929 200 ARFWRETLEDTKDAVGDDCAVATRFSVDELIGPGGIESEGEGVEFVEMLDE-LPDLWDVNVGDWANDGEDSRFYPEGHQE 278 (370)
T ss_pred hHHHHHHHHHHHHHcCCCceEEEEecHHHhcCCCCCCCHHHHHHHHHHHHh-hCCEEEecCCCccccccccccCCccccH
Confidence 3456788999999985 56777764 133332 34444 48999987421 000000 01124
Q ss_pred HHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcC-CCEEEEchHHHH
Q 019244 242 MALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 288 (344)
Q Consensus 242 ~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalG-Ad~V~ig~~~l~ 288 (344)
+...++++.+ ++||+++|||++..++.++|..| ||+|++||+++-
T Consensus 279 ~~~~~ik~~~--~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~la 324 (370)
T cd02929 279 PYIKFVKQVT--SKPVVGVGRFTSPDKMVEVVKSGILDLIGAARPSIA 324 (370)
T ss_pred HHHHHHHHHC--CCCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhhh
Confidence 4556666666 79999999999999999999987 999999999984
|
TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine. |
| >PRK13957 indole-3-glycerol-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00026 Score=65.39 Aligned_cols=87 Identities=22% Similarity=0.255 Sum_probs=65.3
Q ss_pred cCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCC
Q 019244 198 TKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGA 277 (344)
Q Consensus 198 ~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGA 277 (344)
.++-++| ++-+.++++++.++|++.|-|-|..=..+. ..+....++...++.+..+|+.|||.|++|+.+.... |
T Consensus 150 lGle~LV-EVh~~~El~~a~~~ga~iiGINnRdL~t~~---vd~~~~~~L~~~ip~~~~~IsESGI~t~~d~~~l~~~-~ 224 (247)
T PRK13957 150 LGMDVLV-EVHTEDEAKLALDCGAEIIGINTRDLDTFQ---IHQNLVEEVAAFLPPNIVKVGESGIESRSDLDKFRKL-V 224 (247)
T ss_pred cCCceEE-EECCHHHHHHHHhCCCCEEEEeCCCCccce---ECHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHHHHHh-C
Confidence 4666665 578889999999999998888765322221 2233444556666667889999999999999987776 9
Q ss_pred CEEEEchHHHHH
Q 019244 278 SGIFIGRPVVYS 289 (344)
Q Consensus 278 d~V~ig~~~l~~ 289 (344)
|+|.||+.+|.+
T Consensus 225 davLvG~~lm~~ 236 (247)
T PRK13957 225 DAALIGTYFMEK 236 (247)
T ss_pred CEEEECHHHhCC
Confidence 999999999874
|
|
| >TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit | Back alignment and domain information |
|---|
Probab=97.98 E-value=8e-05 Score=69.25 Aligned_cols=77 Identities=25% Similarity=0.265 Sum_probs=62.9
Q ss_pred CH-HHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHH
Q 019244 209 TA-EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 287 (344)
Q Consensus 209 ~~-~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l 287 (344)
++ +.++.+.+.|++.+.+.+.-+- .......++.+.++++.+ ++||+++|||+|.+|+.+++.+||+.|.+|+.++
T Consensus 31 dp~~~a~~~~~~G~~~l~v~Dl~~~-~~~~~~n~~~i~~i~~~~--~~pv~~~GGi~s~~d~~~~~~~Ga~~vivgt~~~ 107 (254)
T TIGR00735 31 DPVELAQRYDEEGADELVFLDITAS-SEGRTTMIDVVERTAETV--FIPLTVGGGIKSIEDVDKLLRAGADKVSINTAAV 107 (254)
T ss_pred CHHHHHHHHHHcCCCEEEEEcCCcc-cccChhhHHHHHHHHHhc--CCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHh
Confidence 44 6688888999999999764221 113346778888888876 7999999999999999999999999999999987
Q ss_pred H
Q 019244 288 Y 288 (344)
Q Consensus 288 ~ 288 (344)
.
T Consensus 108 ~ 108 (254)
T TIGR00735 108 K 108 (254)
T ss_pred h
Confidence 5
|
|
| >PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00027 Score=63.97 Aligned_cols=172 Identities=17% Similarity=0.160 Sum_probs=101.1
Q ss_pred HHcCCccc--cCCHHHHHHHHHHHHHcCCcEEEeccCCccccccHHHHHhhcCCCC-cccccccccccccccccccchhh
Q 019244 98 SAAGTIMV--YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP-FLTLKNFQGLDLGKMDEANDSGL 174 (344)
Q Consensus 98 ~~~g~~~~--~~d~~~~~~~i~~a~~ag~~~l~~tvd~~~~g~r~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~ 174 (344)
.+.++.-+ ..+.+...++++.+.++|++.+.+|..+|.--.-.+.++..| |. -++...+ +...........+.
T Consensus 13 ~~~~~iaV~r~~~~~~a~~i~~al~~~Gi~~iEitl~~~~~~~~I~~l~~~~--p~~~IGAGTV--l~~~~a~~a~~aGA 88 (212)
T PRK05718 13 RAGPVVPVIVINKLEDAVPLAKALVAGGLPVLEVTLRTPAALEAIRLIAKEV--PEALIGAGTV--LNPEQLAQAIEAGA 88 (212)
T ss_pred HHCCEEEEEEcCCHHHHHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHHHC--CCCEEEEeec--cCHHHHHHHHHcCC
Confidence 34444332 456777788888899999999999988875322234444443 31 0111111 00000000011111
Q ss_pred HHHHhhcCCCCCcHHHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCC
Q 019244 175 AAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGR 254 (344)
Q Consensus 175 ~~~~~~~~~~~~~~~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~ 254 (344)
+..++ +.++-+.++.-++ .++|++ -++.|+.++..+.++|++.|+++-.+ .. +|+ ..++.++..++ +
T Consensus 89 ~Fivs----P~~~~~vi~~a~~-~~i~~i-PG~~TptEi~~a~~~Ga~~vKlFPa~--~~-gg~---~~lk~l~~p~p-~ 155 (212)
T PRK05718 89 QFIVS----PGLTPPLLKAAQE-GPIPLI-PGVSTPSELMLGMELGLRTFKFFPAE--AS-GGV---KMLKALAGPFP-D 155 (212)
T ss_pred CEEEC----CCCCHHHHHHHHH-cCCCEe-CCCCCHHHHHHHHHCCCCEEEEccch--hc-cCH---HHHHHHhccCC-C
Confidence 12222 2344455666554 577766 46899999999999999999995321 01 123 34444444443 7
Q ss_pred CcEEEecCCCCHHHHHHHHHcCCCEEEEchHHH
Q 019244 255 IPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 287 (344)
Q Consensus 255 ~~via~GGIr~g~dv~kalalGAd~V~ig~~~l 287 (344)
++++.+|||. ..++...+.+|+.+++.|+.++
T Consensus 156 ~~~~ptGGV~-~~ni~~~l~ag~v~~vggs~L~ 187 (212)
T PRK05718 156 VRFCPTGGIS-PANYRDYLALPNVLCIGGSWMV 187 (212)
T ss_pred CeEEEeCCCC-HHHHHHHHhCCCEEEEEChHhC
Confidence 9999999998 5899999999965555555443
|
|
| >PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=4.8e-05 Score=70.66 Aligned_cols=76 Identities=24% Similarity=0.291 Sum_probs=62.7
Q ss_pred HHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 210 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
.+.++.+.+.|++.|.+.+..... ......++.+.++++.+ ++||+++|||+|.+|+.+++..||+.|++|+.++.
T Consensus 33 ~~~a~~~~~~G~~~i~i~dl~~~~-~~~~~~~~~i~~i~~~~--~ipv~~~GGi~s~~~~~~~l~~Ga~~Viigt~~l~ 108 (253)
T PRK02083 33 VELAKRYNEEGADELVFLDITASS-EGRDTMLDVVERVAEQV--FIPLTVGGGIRSVEDARRLLRAGADKVSINSAAVA 108 (253)
T ss_pred HHHHHHHHHcCCCEEEEEeCCccc-ccCcchHHHHHHHHHhC--CCCEEeeCCCCCHHHHHHHHHcCCCEEEEChhHhh
Confidence 466888889999999997643211 12356778888888876 79999999999999999999999999999998875
|
|
| >cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family | Back alignment and domain information |
|---|
Probab=97.96 E-value=6.5e-05 Score=67.53 Aligned_cols=90 Identities=29% Similarity=0.368 Sum_probs=63.1
Q ss_pred cHHHHHHHHHhcC-CcEEEEee-----cCHHH----HHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCc
Q 019244 187 SWKDVKWLQTITK-LPILVKGV-----LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIP 256 (344)
Q Consensus 187 ~~~~i~~i~~~~~-~PvivK~v-----~~~~~----a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~ 256 (344)
.++++.++++..+ +|+.+ + ++.+. ++.+.++|+|+|..+. |-. ....++..+..+++.++.++|
T Consensus 103 ~~~ei~~v~~~~~g~~lkv--I~e~~~l~~~~i~~a~ria~e~GaD~IKTsT-G~~---~~~at~~~v~~~~~~~~~~v~ 176 (203)
T cd00959 103 VYEEIAAVVEACGGAPLKV--ILETGLLTDEEIIKACEIAIEAGADFIKTST-GFG---PGGATVEDVKLMKEAVGGRVG 176 (203)
T ss_pred HHHHHHHHHHhcCCCeEEE--EEecCCCCHHHHHHHHHHHHHhCCCEEEcCC-CCC---CCCCCHHHHHHHHHHhCCCce
Confidence 4557888888764 55433 3 45444 5778999999999973 211 122444444444445546899
Q ss_pred EEEecCCCCHHHHHHHHHcCCCEEEE
Q 019244 257 VFLDGGVRRGTDVFKALALGASGIFI 282 (344)
Q Consensus 257 via~GGIr~g~dv~kalalGAd~V~i 282 (344)
|.++|||++..++++.+.+||+-++.
T Consensus 177 ik~aGGikt~~~~l~~~~~g~~riG~ 202 (203)
T cd00959 177 VKAAGGIRTLEDALAMIEAGATRIGT 202 (203)
T ss_pred EEEeCCCCCHHHHHHHHHhChhhccC
Confidence 99999999999999999999987653
|
DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction. |
| >TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase | Back alignment and domain information |
|---|
Probab=97.96 E-value=8.3e-05 Score=68.79 Aligned_cols=101 Identities=18% Similarity=0.055 Sum_probs=74.1
Q ss_pred cHHHHHHHHHhcCCcEEEEe-ecCHHHHHHHHHcCCcEEEEccC---------------CCC--------------C---
Q 019244 187 SWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSNH---------------GAR--------------Q--- 233 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~-v~~~~~a~~~~~~G~d~I~v~~~---------------gG~--------------~--- 233 (344)
+.+.|+++.+.+++|+.+.+ +.|.++++.+.+.|++.|++++. |++ .
T Consensus 62 n~~~i~~i~~~~~~~v~vgGGIrs~e~~~~~l~~Ga~~vvigT~a~~~p~~~~~~~~~~g~~ivvslD~k~~g~~~~v~~ 141 (243)
T TIGR01919 62 NEMMLEEVVKLLVVVEELSGGRRDDSSLRAALTGGRARVNGGTAALENPWWAAAVIRYGGDIVAVGLDVLEDGEWHTLGN 141 (243)
T ss_pred hHHHHHHHHHHCCCCEEEcCCCCCHHHHHHHHHcCCCEEEECchhhCCHHHHHHHHHHccccEEEEEEEecCCceEEEEC
Confidence 45678888888889988865 57899999999999999888521 110 0
Q ss_pred --C-----------------------------CC--chhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHH---HcCC
Q 019244 234 --L-----------------------------DY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKAL---ALGA 277 (344)
Q Consensus 234 --~-----------------------------~~--g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kal---alGA 277 (344)
+ |+ .-+..+.+.++++.. ++|||++|||+|.+|+.+.- ..|+
T Consensus 142 ~Gw~~~~~~~~~~~~~~~~~g~~~ii~tdI~~dGt~~G~d~~l~~~l~~~~--~~pviasGGv~s~eDl~~l~~l~~~Gv 219 (243)
T TIGR01919 142 RGWSDGGGDLEVLERLLDSGGCSRVVVTDSKKDGLSGGPNELLLEVVAART--DAIVAASGGSSLLDDLRAIKYLDEGGV 219 (243)
T ss_pred CCeecCCCcHHHHHHHHHhCCCCEEEEEecCCcccCCCcCHHHHHHHHhhC--CCCEEEECCcCCHHHHHHHHhhccCCe
Confidence 0 00 113445555555543 79999999999999998764 3599
Q ss_pred CEEEEchHHHHH
Q 019244 278 SGIFIGRPVVYS 289 (344)
Q Consensus 278 d~V~ig~~~l~~ 289 (344)
++|.+|++++.+
T Consensus 220 ~gvivg~Al~~g 231 (243)
T TIGR01919 220 SVAIGGKLLYAR 231 (243)
T ss_pred eEEEEhHHHHcC
Confidence 999999998753
|
This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent. |
| >PRK13111 trpA tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00038 Score=64.90 Aligned_cols=104 Identities=15% Similarity=0.175 Sum_probs=68.7
Q ss_pred CCcHHHHHHHHH---hcCCcEEEEee--cCHHHHHHHHHcCCcEEEE-ccCC--CCCCCCchhhHHHHHHHHHHccCCCc
Q 019244 185 SLSWKDVKWLQT---ITKLPILVKGV--LTAEDARIAVQAGAAGIIV-SNHG--ARQLDYVPATIMALEEVVKATQGRIP 256 (344)
Q Consensus 185 ~~~~~~i~~i~~---~~~~PvivK~v--~~~~~a~~~~~~G~d~I~v-~~~g--G~~~~~g~~~~~~l~~i~~~~~~~~~ 256 (344)
++.++..+++++ ..++..|.=.. .+.+.++...+..-++|.+ +-.| |..........+.+.++++.. ++|
T Consensus 125 DLp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~s~gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~~--~~p 202 (258)
T PRK13111 125 DLPPEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIASHASGFVYYVSRAGVTGARSADAADLAELVARLKAHT--DLP 202 (258)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEeCCCCCCcccCCCccHHHHHHHHHhcC--CCc
Confidence 444555444443 34655553222 3457788888888888876 3222 221111122334677777754 799
Q ss_pred EEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhh
Q 019244 257 VFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 291 (344)
Q Consensus 257 via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~ 291 (344)
|++.+||++++|+.+++.. ||+|.+|+.++..+.
T Consensus 203 v~vGfGI~~~e~v~~~~~~-ADGviVGSaiv~~~~ 236 (258)
T PRK13111 203 VAVGFGISTPEQAAAIAAV-ADGVIVGSALVKIIE 236 (258)
T ss_pred EEEEcccCCHHHHHHHHHh-CCEEEEcHHHHHHHH
Confidence 9999999999999998876 999999999988654
|
|
| >cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00015 Score=63.77 Aligned_cols=78 Identities=23% Similarity=0.254 Sum_probs=59.9
Q ss_pred cCHHHHHHHHHcCCcEEEEccC--CCCCCC-CchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEch
Q 019244 208 LTAEDARIAVQAGAAGIIVSNH--GARQLD-YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 284 (344)
Q Consensus 208 ~~~~~a~~~~~~G~d~I~v~~~--gG~~~~-~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~ 284 (344)
.+.+++..+.+.|+|+|.++.. +..... +.+..++.+.++++.. ++||++.|||. ..++.+++.+||+.+.+|+
T Consensus 103 ~t~~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~pv~a~GGi~-~~~i~~~~~~Ga~~i~~g~ 179 (196)
T cd00564 103 HSLEEALRAEELGADYVGFGPVFPTPTKPGAGPPLGLELLREIAELV--EIPVVAIGGIT-PENAAEVLAAGADGVAVIS 179 (196)
T ss_pred CCHHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhC--CCCEEEECCCC-HHHHHHHHHcCCCEEEEeh
Confidence 5788999999999999998642 111111 1344567777776653 79999999995 7899999999999999999
Q ss_pred HHHH
Q 019244 285 PVVY 288 (344)
Q Consensus 285 ~~l~ 288 (344)
.++.
T Consensus 180 ~i~~ 183 (196)
T cd00564 180 AITG 183 (196)
T ss_pred Hhhc
Confidence 9764
|
TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions. |
| >PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00055 Score=64.77 Aligned_cols=92 Identities=14% Similarity=0.185 Sum_probs=67.1
Q ss_pred HHHHHHHHhcCCc-EEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHH
Q 019244 189 KDVKWLQTITKLP-ILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 267 (344)
Q Consensus 189 ~~i~~i~~~~~~P-vivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~ 267 (344)
+.++.+|+..+.. .|.=++.|.+++..+.++|+|.|-++|. ++..+....+..+....++++.++||| +.+
T Consensus 184 ~av~~~r~~~~~~~~I~VEv~tleea~eA~~~GaD~I~LDn~-------~~e~l~~av~~~~~~~~~i~leAsGGI-t~~ 255 (288)
T PRK07428 184 EAITRIRQRIPYPLTIEVETETLEQVQEALEYGADIIMLDNM-------PVDLMQQAVQLIRQQNPRVKIEASGNI-TLE 255 (288)
T ss_pred HHHHHHHHhCCCCCEEEEECCCHHHHHHHHHcCCCEEEECCC-------CHHHHHHHHHHHHhcCCCeEEEEECCC-CHH
Confidence 4588888876522 2333468899999999999999999863 233333222222222357999999999 599
Q ss_pred HHHHHHHcCCCEEEEchHHHH
Q 019244 268 DVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 268 dv~kalalGAd~V~ig~~~l~ 288 (344)
.+.++.+.|+|.+.+|+++..
T Consensus 256 ni~~ya~tGvD~Isvgsl~~s 276 (288)
T PRK07428 256 TIRAVAETGVDYISSSAPITR 276 (288)
T ss_pred HHHHHHHcCCCEEEEchhhhC
Confidence 999999999999999997753
|
|
| >TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=97.91 E-value=7.3e-05 Score=73.02 Aligned_cols=93 Identities=22% Similarity=0.318 Sum_probs=66.0
Q ss_pred CcHHHHHHHHHhcCCcEEEEeecC----HHHHHHHHHcCCcEEEEccCCCCCCC-CchhhHHHHHHHHHHccCCCcEEEe
Q 019244 186 LSWKDVKWLQTITKLPILVKGVLT----AEDARIAVQAGAAGIIVSNHGARQLD-YVPATIMALEEVVKATQGRIPVFLD 260 (344)
Q Consensus 186 ~~~~~i~~i~~~~~~PvivK~v~~----~~~a~~~~~~G~d~I~v~~~gG~~~~-~g~~~~~~l~~i~~~~~~~~~via~ 260 (344)
+..+.++++++. .|.+|...+ .+.++.+.++|+|.|++.+.--.+.. .+...+..+.++.+.+ ++|||+
T Consensus 120 l~~~ii~~vr~a---~VtvkiRl~~~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~--~IPVI~- 193 (369)
T TIGR01304 120 LLGERIAEVRDS---GVITAVRVSPQNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGEL--DVPVIA- 193 (369)
T ss_pred HHHHHHHHHHhc---ceEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHC--CCCEEE-
Confidence 334567778775 277777644 36688999999999999642111111 1112344566666655 799998
Q ss_pred cCCCCHHHHHHHHHcCCCEEEEch
Q 019244 261 GGVRRGTDVFKALALGASGIFIGR 284 (344)
Q Consensus 261 GGIr~g~dv~kalalGAd~V~ig~ 284 (344)
|++.+..|+.+++.+|||+|++|+
T Consensus 194 G~V~t~e~A~~~~~aGaDgV~~G~ 217 (369)
T TIGR01304 194 GGVNDYTTALHLMRTGAAGVIVGP 217 (369)
T ss_pred eCCCCHHHHHHHHHcCCCEEEECC
Confidence 999999999999999999999775
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302. |
| >PRK08883 ribulose-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0016 Score=59.35 Aligned_cols=95 Identities=16% Similarity=0.172 Sum_probs=56.7
Q ss_pred HHHHHHhcCCcEEEEee--cCHHHHHHHHHcCCcEEEEcc-CCCC-CCCCchhhHHHHHHHHHHcc---CCCcEEEecCC
Q 019244 191 VKWLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVSN-HGAR-QLDYVPATIMALEEVVKATQ---GRIPVFLDGGV 263 (344)
Q Consensus 191 i~~i~~~~~~PvivK~v--~~~~~a~~~~~~G~d~I~v~~-~gG~-~~~~g~~~~~~l~~i~~~~~---~~~~via~GGI 263 (344)
++++|+. ++-..+-.- .+.+..+..++ =+|.|.+=+ .+|. ...+-+..++-+.++++... .+++|.++|||
T Consensus 99 l~~ik~~-g~k~GlalnP~Tp~~~i~~~l~-~~D~vlvMtV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI 176 (220)
T PRK08883 99 LQLIKEH-GCQAGVVLNPATPLHHLEYIMD-KVDLILLMSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEIDGGV 176 (220)
T ss_pred HHHHHHc-CCcEEEEeCCCCCHHHHHHHHH-hCCeEEEEEecCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEEECCC
Confidence 5566654 433322221 23344554444 356555422 1111 11233445566666665542 14899999999
Q ss_pred CCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 264 RRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 264 r~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
. .+.+.+....|||.+.+|+.++.
T Consensus 177 ~-~eni~~l~~aGAd~vVvGSaIf~ 200 (220)
T PRK08883 177 K-VDNIREIAEAGADMFVAGSAIFG 200 (220)
T ss_pred C-HHHHHHHHHcCCCEEEEeHHHhC
Confidence 9 88999999999999999998753
|
|
| >cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00074 Score=63.49 Aligned_cols=88 Identities=22% Similarity=0.243 Sum_probs=62.4
Q ss_pred HHHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHcc---CCCcEEEecCCC
Q 019244 188 WKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ---GRIPVFLDGGVR 264 (344)
Q Consensus 188 ~~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~---~~~~via~GGIr 264 (344)
.+.++.+|+..+-..+.-.+.+.+++..+.++|+|+|.+++-. +..+ .++.+.++ .++|++++|||
T Consensus 171 ~~av~~~R~~~~~~~IgVev~t~eea~~A~~~gaD~I~ld~~~-------p~~l---~~~~~~~~~~~~~i~i~AsGGI- 239 (272)
T cd01573 171 LKALARLRATAPEKKIVVEVDSLEEALAAAEAGADILQLDKFS-------PEEL---AELVPKLRSLAPPVLLAAAGGI- 239 (272)
T ss_pred HHHHHHHHHhCCCCeEEEEcCCHHHHHHHHHcCCCEEEECCCC-------HHHH---HHHHHHHhccCCCceEEEECCC-
Confidence 3467788876532223334578999999999999999987531 2222 23332221 36999999999
Q ss_pred CHHHHHHHHHcCCCEEEEchHH
Q 019244 265 RGTDVFKALALGASGIFIGRPV 286 (344)
Q Consensus 265 ~g~dv~kalalGAd~V~ig~~~ 286 (344)
+..++.++.+.|+|.+.++..+
T Consensus 240 ~~~ni~~~~~~Gvd~I~vsai~ 261 (272)
T cd01573 240 NIENAAAYAAAGADILVTSAPY 261 (272)
T ss_pred CHHHHHHHHHcCCcEEEEChhh
Confidence 7899999999999999776653
|
In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. |
| >PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside [] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00025 Score=68.84 Aligned_cols=101 Identities=26% Similarity=0.330 Sum_probs=73.1
Q ss_pred CcHHHHHHHHHhc--CCcEEEEeec--------CHHH----HHHHHHcCCcEEEEccCCCC------C-CC--Cch-hhH
Q 019244 186 LSWKDVKWLQTIT--KLPILVKGVL--------TAED----ARIAVQAGAAGIIVSNHGAR------Q-LD--YVP-ATI 241 (344)
Q Consensus 186 ~~~~~i~~i~~~~--~~PvivK~v~--------~~~~----a~~~~~~G~d~I~v~~~gG~------~-~~--~g~-~~~ 241 (344)
|..+.|+.||+.+ +.||.+|... +.++ ++.+.++|+|.+.++..... . .. ... ..+
T Consensus 201 f~~Eii~aIr~~vg~d~~v~~Rls~~~~~~~g~~~~e~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (341)
T PF00724_consen 201 FLLEIIEAIREAVGPDFPVGVRLSPDDFVEGGITLEETIEIAKLLEELGVDFLDVSHGSYVHWSEPRPSPPFDFEPGYNL 280 (341)
T ss_dssp HHHHHHHHHHHHHTGGGEEEEEEETTCSSTTSHHSHHHHHHHHHHHHHHHTTEEEEEESEEEEEBTSSTTTTTTTTTTTH
T ss_pred HHHHHHHHHHHHhcCCceEEEEEeeecccCCCCchHHHHHHHHHHHHHhhhhccccccccccccccccccccccccchhh
Confidence 3567899999988 4789999862 1222 57788999999877632211 0 01 111 123
Q ss_pred HHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcC-CCEEEEchHHHH
Q 019244 242 MALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 288 (344)
Q Consensus 242 ~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalG-Ad~V~ig~~~l~ 288 (344)
.....+++.+ ++|||+.|||++...+.++++.| ||+|++||+++.
T Consensus 281 ~~a~~ik~~~--~~pvi~~G~i~~~~~ae~~l~~g~~DlV~~gR~~la 326 (341)
T PF00724_consen 281 DLAEAIKKAV--KIPVIGVGGIRTPEQAEKALEEGKADLVAMGRPLLA 326 (341)
T ss_dssp HHHHHHHHHH--SSEEEEESSTTHHHHHHHHHHTTSTSEEEESHHHHH
T ss_pred hhhhhhhhhc--CceEEEEeeecchhhhHHHHhcCCceEeeccHHHHh
Confidence 4455666666 79999999999999999999988 999999999985
|
It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A .... |
| >PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00094 Score=62.85 Aligned_cols=86 Identities=23% Similarity=0.292 Sum_probs=65.2
Q ss_pred HHHHHHHhcC-CcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHH
Q 019244 190 DVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 268 (344)
Q Consensus 190 ~i~~i~~~~~-~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~d 268 (344)
.++.+|+..+ .+|. -.+-|.+++..+.++|+|+|-+++. +.+.+.++.+..++++|+.++|||. .+.
T Consensus 179 av~~~r~~~~~~~I~-VEv~tleea~eA~~~gaD~I~LD~~----------~~e~l~~~v~~~~~~i~leAsGGIt-~~n 246 (277)
T PRK05742 179 AVAAAHRIAPGKPVE-VEVESLDELRQALAAGADIVMLDEL----------SLDDMREAVRLTAGRAKLEASGGIN-EST 246 (277)
T ss_pred HHHHHHHhCCCCeEE-EEeCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhCCCCcEEEECCCC-HHH
Confidence 4667776543 3333 3457899999999999999988643 2345555555554589999999994 899
Q ss_pred HHHHHHcCCCEEEEchHHH
Q 019244 269 VFKALALGASGIFIGRPVV 287 (344)
Q Consensus 269 v~kalalGAd~V~ig~~~l 287 (344)
+.++.+.|+|.+.+|.+..
T Consensus 247 i~~~a~tGvD~Isvg~lt~ 265 (277)
T PRK05742 247 LRVIAETGVDYISIGAMTK 265 (277)
T ss_pred HHHHHHcCCCEEEEChhhc
Confidence 9999999999999998664
|
|
| >PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00098 Score=62.72 Aligned_cols=149 Identities=21% Similarity=0.190 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHcCCcEEEeccCCccccccHH---HHHhhcCCCCcccccccccccccccccccchhhHHHHhhcCCCCCc
Q 019244 111 VVAQLVRRAERAGFKAIALTVDTPRLGRREA---DIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS 187 (344)
Q Consensus 111 ~~~~~i~~a~~ag~~~l~~tvd~~~~g~r~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (344)
.+.++++.+++.+.+..++...-...|.|.- ..+.|-+.|..++....-.+. .|.... .. .
T Consensus 106 ~T~~~v~~~~~~~~~~~i~~TRKt~Pg~R~l~k~Av~~GGg~~HR~gLsd~vLik--------dnHi~~-~~-------i 169 (278)
T PRK08385 106 ETRKLVELVKAVNPKVRVAGTRKTLPGLRLLDKKAIIIGGGEPHRFSLSDAILIK--------DNHLAL-VP-------L 169 (278)
T ss_pred HHHHHHHHHHhcCCCEEEEEeCCCChhhhHHHHHHHHhcCCcccCCCCcccEEEc--------cCHHHH-HH-------H
Confidence 3456777777778887666665556666643 333333334433321111111 111110 00 1
Q ss_pred HHHHHHHHHhcC-CcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHc-----cCCCcEEEec
Q 019244 188 WKDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT-----QGRIPVFLDG 261 (344)
Q Consensus 188 ~~~i~~i~~~~~-~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~-----~~~~~via~G 261 (344)
-+.++.+|+..+ .+ |.=++.+.++++.+.++|+|.|.++|. .+ +.+.++.+.+ ++++.+.++|
T Consensus 170 ~~av~~~r~~~~~~k-IeVEv~~leea~~a~~agaDiI~LDn~-------~~---e~l~~~v~~l~~~~~~~~~~leaSG 238 (278)
T PRK08385 170 EEAIRRAKEFSVYKV-VEVEVESLEDALKAAKAGADIIMLDNM-------TP---EEIREVIEALKREGLRERVKIEVSG 238 (278)
T ss_pred HHHHHHHHHhCCCCc-EEEEeCCHHHHHHHHHcCcCEEEECCC-------CH---HHHHHHHHHHHhcCcCCCEEEEEEC
Confidence 235778887653 45 334678999999999999999999874 13 3333333322 2478899999
Q ss_pred CCCCHHHHHHHHHcCCCEEEEchHHH
Q 019244 262 GVRRGTDVFKALALGASGIFIGRPVV 287 (344)
Q Consensus 262 GIr~g~dv~kalalGAd~V~ig~~~l 287 (344)
|| +...+.++.+.|+|.+.+|.+..
T Consensus 239 GI-~~~ni~~yA~tGvD~Is~galt~ 263 (278)
T PRK08385 239 GI-TPENIEEYAKLDVDVISLGALTH 263 (278)
T ss_pred CC-CHHHHHHHHHcCCCEEEeChhhc
Confidence 99 79999999999999999998764
|
|
| >TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00029 Score=63.17 Aligned_cols=95 Identities=18% Similarity=0.207 Sum_probs=67.7
Q ss_pred HHHHHHHhcCCcEEEEee--cC-HHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCH
Q 019244 190 DVKWLQTITKLPILVKGV--LT-AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 266 (344)
Q Consensus 190 ~i~~i~~~~~~PvivK~v--~~-~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g 266 (344)
.++++++ .++++++-.. .+ .++++.+.+.|+|.|.+.. |......++..+..+.++++..+ ..++.++||| +.
T Consensus 94 ~i~~~~~-~g~~~~~~~~~~~t~~~~~~~~~~~g~d~v~~~p-g~~~~~~~~~~~~~i~~l~~~~~-~~~i~v~GGI-~~ 169 (206)
T TIGR03128 94 AVKAAKK-HGKEVQVDLINVKDKVKRAKELKELGADYIGVHT-GLDEQAKGQNPFEDLQTILKLVK-EARVAVAGGI-NL 169 (206)
T ss_pred HHHHHHH-cCCEEEEEecCCCChHHHHHHHHHcCCCEEEEcC-CcCcccCCCCCHHHHHHHHHhcC-CCcEEEECCc-CH
Confidence 4555555 5889887542 22 4788889999999998852 21111233445566666666553 4677779999 78
Q ss_pred HHHHHHHHcCCCEEEEchHHHH
Q 019244 267 TDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 267 ~dv~kalalGAd~V~ig~~~l~ 288 (344)
+++.+++..||+.+.+||.++.
T Consensus 170 ~n~~~~~~~Ga~~v~vGsai~~ 191 (206)
T TIGR03128 170 DTIPDVIKLGPDIVIVGGAITK 191 (206)
T ss_pred HHHHHHHHcCCCEEEEeehhcC
Confidence 8899999999999999999764
|
at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase. |
| >TIGR01163 rpe ribulose-phosphate 3-epimerase | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0016 Score=58.25 Aligned_cols=89 Identities=18% Similarity=0.158 Sum_probs=56.7
Q ss_pred CCcEEEEee-cCHHHHHHHHHcCCcEEEEccC--CCCCCCCchhhHHHHHHHHHHcc---CCCcEEEecCCCCHHHHHHH
Q 019244 199 KLPILVKGV-LTAEDARIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKA 272 (344)
Q Consensus 199 ~~PvivK~v-~~~~~a~~~~~~G~d~I~v~~~--gG~~~~~g~~~~~~l~~i~~~~~---~~~~via~GGIr~g~dv~ka 272 (344)
++.+++-.. .+..+..+....++|.+.+... |++...+.+...+.+.++++..+ ..+|++++|||+ .+++.++
T Consensus 104 g~~~~~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~v~GGI~-~env~~l 182 (210)
T TIGR01163 104 GAKAGIVLNPATPLEFLEYVLPDVDLVLLMSVNPGFGGQKFIPDTLEKIREVRKMIDENGLSILIEVDGGVN-DDNAREL 182 (210)
T ss_pred CCcEEEEECCCCCHHHHHHHHhhCCEEEEEEEcCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCcC-HHHHHHH
Confidence 544443222 2344444455667899876432 22222233444555666655442 237899999996 7999999
Q ss_pred HHcCCCEEEEchHHHH
Q 019244 273 LALGASGIFIGRPVVY 288 (344)
Q Consensus 273 lalGAd~V~ig~~~l~ 288 (344)
+..|||.+.+|++++.
T Consensus 183 ~~~gad~iivgsai~~ 198 (210)
T TIGR01163 183 AEAGADILVAGSAIFG 198 (210)
T ss_pred HHcCCCEEEEChHHhC
Confidence 9999999999999874
|
This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants. |
| >PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00012 Score=73.44 Aligned_cols=106 Identities=18% Similarity=0.211 Sum_probs=65.3
Q ss_pred ecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHH
Q 019244 207 VLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 286 (344)
Q Consensus 207 v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~ 286 (344)
+-+.++++++.++|++.|-|-|..=..+ ...+....++...++.++.+++-+||.|.+|+.++ ..|||+|.||+.+
T Consensus 166 vh~~~El~~al~~~a~iiGiNnRdL~t~---~vd~~~~~~l~~~ip~~~~~vseSGI~t~~d~~~~-~~~~davLiG~~l 241 (454)
T PRK09427 166 VSNEEELERAIALGAKVIGINNRNLRDL---SIDLNRTRELAPLIPADVIVISESGIYTHAQVREL-SPFANGFLIGSSL 241 (454)
T ss_pred ECCHHHHHHHHhCCCCEEEEeCCCCccc---eECHHHHHHHHhhCCCCcEEEEeCCCCCHHHHHHH-HhcCCEEEECHHH
Confidence 3444555555555555444433221111 11233344455566667889999999999999875 4589999999999
Q ss_pred HHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHhhhc
Q 019244 287 VYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEIT 325 (344)
Q Consensus 287 l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~~~i~~l~ 325 (344)
|.+ +.....++.+. ......||.++.+|.+
T Consensus 242 m~~------~d~~~~~~~L~---~~~vKICGit~~eda~ 271 (454)
T PRK09427 242 MAE------DDLELAVRKLI---LGENKVCGLTRPQDAK 271 (454)
T ss_pred cCC------CCHHHHHHHHh---ccccccCCCCCHHHHH
Confidence 974 12223333332 2345779999988886
|
|
| >PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00024 Score=64.91 Aligned_cols=76 Identities=28% Similarity=0.351 Sum_probs=61.5
Q ss_pred HHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 210 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
.+.++...+.|++.+.+..--|. .....+.++.+.++++.+ .+||+++|||++.+|+.+++.+||+.|.+|+.++.
T Consensus 33 ~~~a~~~~~~g~~~i~v~dld~~-~~g~~~~~~~i~~i~~~~--~~pv~~~GGI~~~ed~~~~~~~Ga~~vilg~~~l~ 108 (233)
T PRK00748 33 VAQAKAWEDQGAKWLHLVDLDGA-KAGKPVNLELIEAIVKAV--DIPVQVGGGIRSLETVEALLDAGVSRVIIGTAAVK 108 (233)
T ss_pred HHHHHHHHHcCCCEEEEEeCCcc-ccCCcccHHHHHHHHHHC--CCCEEEcCCcCCHHHHHHHHHcCCCEEEECchHHh
Confidence 35578888999999998763221 112346778888888776 69999999999999999999999999999998875
|
|
| >PLN02591 tryptophan synthase | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0013 Score=61.10 Aligned_cols=106 Identities=15% Similarity=0.224 Sum_probs=69.7
Q ss_pred CCCcHHHHHHHHHh---cCCcEEEEee--cCHHHHHHHHHcCCcEEEEccCCC-CCCCCc-hhh-HHHHHHHHHHccCCC
Q 019244 184 RSLSWKDVKWLQTI---TKLPILVKGV--LTAEDARIAVQAGAAGIIVSNHGA-RQLDYV-PAT-IMALEEVVKATQGRI 255 (344)
Q Consensus 184 ~~~~~~~i~~i~~~---~~~PvivK~v--~~~~~a~~~~~~G~d~I~v~~~gG-~~~~~g-~~~-~~~l~~i~~~~~~~~ 255 (344)
+++.+++.+++++. .++..|.=.. .+.+..+...+..-.+|.+-+.-| +....+ +.. .+.+..+++.. ++
T Consensus 113 pDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~~--~~ 190 (250)
T PLN02591 113 PDLPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEASEGFVYLVSSTGVTGARASVSGRVESLLQELKEVT--DK 190 (250)
T ss_pred CCCCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcEEEeeCCCCcCCCcCCchhHHHHHHHHHhcC--CC
Confidence 35556655555543 3666554322 334567777777777887643222 111111 223 34466676643 89
Q ss_pred cEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhh
Q 019244 256 PVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 291 (344)
Q Consensus 256 ~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~ 291 (344)
||+.--||++++|+.+++..|||+|.+|+.++.-+.
T Consensus 191 Pv~vGFGI~~~e~v~~~~~~GADGvIVGSalVk~i~ 226 (250)
T PLN02591 191 PVAVGFGISKPEHAKQIAGWGADGVIVGSAMVKALG 226 (250)
T ss_pred ceEEeCCCCCHHHHHHHHhcCCCEEEECHHHHHhhh
Confidence 999988999999999999999999999999987553
|
|
| >PRK07226 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00037 Score=65.35 Aligned_cols=87 Identities=26% Similarity=0.387 Sum_probs=61.8
Q ss_pred HHHHHHhcCCcEEEEe---------ecCHHH----HHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcE
Q 019244 191 VKWLQTITKLPILVKG---------VLTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 257 (344)
Q Consensus 191 i~~i~~~~~~PvivK~---------v~~~~~----a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~v 257 (344)
+.++...+++|+++-. ..+.+. ++.+.+.|+|+|..+-.| ..+.+.++.+.. ++||
T Consensus 131 v~~~~~~~g~pl~vi~~~~g~~~e~~~~~~~i~~a~~~a~e~GAD~vKt~~~~---------~~~~l~~~~~~~--~ipV 199 (267)
T PRK07226 131 VAEECEEWGMPLLAMMYPRGPGIKNEYDPEVVAHAARVAAELGADIVKTNYTG---------DPESFREVVEGC--PVPV 199 (267)
T ss_pred HHHHHHHcCCcEEEEEecCCCccCCCccHHHHHHHHHHHHHHCCCEEeeCCCC---------CHHHHHHHHHhC--CCCE
Confidence 3334445689987731 123333 577889999999986321 346666666543 7999
Q ss_pred EEecCCC--CHHHHHHHH----HcCCCEEEEchHHHH
Q 019244 258 FLDGGVR--RGTDVFKAL----ALGASGIFIGRPVVY 288 (344)
Q Consensus 258 ia~GGIr--~g~dv~kal----alGAd~V~ig~~~l~ 288 (344)
+++|||+ |..++++.+ .+||+.+.+|+.++.
T Consensus 200 ~a~GGi~~~~~~~~l~~v~~~~~aGA~Gis~gr~i~~ 236 (267)
T PRK07226 200 VIAGGPKTDTDREFLEMVRDAMEAGAAGVAVGRNVFQ 236 (267)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHcCCcEEehhhhhhc
Confidence 9999999 777766664 899999999999875
|
|
| >cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS) | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00037 Score=62.12 Aligned_cols=94 Identities=20% Similarity=0.142 Sum_probs=68.0
Q ss_pred HHHHHHHhcCCcEEE--EeecCHHHHHHHHHcCCcEEEEcc-CCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCH
Q 019244 190 DVKWLQTITKLPILV--KGVLTAEDARIAVQAGAAGIIVSN-HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 266 (344)
Q Consensus 190 ~i~~i~~~~~~Pviv--K~v~~~~~a~~~~~~G~d~I~v~~-~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g 266 (344)
.++.+++ .++++++ =...|++++..+...|+|.+.+.- ..+... +.....+.+.++.+. .++|++++|||+ .
T Consensus 95 ~i~~~~~-~g~~~~v~~~~~~t~~e~~~~~~~~~d~v~~~~~~~~~~~-~~~~~~~~i~~~~~~--~~~~i~~~GGI~-~ 169 (202)
T cd04726 95 AVKAAKK-YGKEVQVDLIGVEDPEKRAKLLKLGVDIVILHRGIDAQAA-GGWWPEDDLKKVKKL--LGVKVAVAGGIT-P 169 (202)
T ss_pred HHHHHHH-cCCeEEEEEeCCCCHHHHHHHHHCCCCEEEEcCccccccc-CCCCCHHHHHHHHhh--cCCCEEEECCcC-H
Confidence 3555554 4777775 345788888889999999998841 111111 123455666666654 379999999996 9
Q ss_pred HHHHHHHHcCCCEEEEchHHHH
Q 019244 267 TDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 267 ~dv~kalalGAd~V~ig~~~l~ 288 (344)
+++.+++..|||.+.+||+++.
T Consensus 170 ~~i~~~~~~Gad~vvvGsai~~ 191 (202)
T cd04726 170 DTLPEFKKAGADIVIVGRAITG 191 (202)
T ss_pred HHHHHHHhcCCCEEEEeehhcC
Confidence 9999999999999999999763
|
KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates. |
| >PRK08649 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00014 Score=71.12 Aligned_cols=94 Identities=18% Similarity=0.245 Sum_probs=64.5
Q ss_pred cHHHHHHHHHhcCCcEEEEee--cCHHHHHHHHHcCCcEEEEccCCCCCCCCchh-hHHHHHHHHHHccCCCcEEEecCC
Q 019244 187 SWKDVKWLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGV 263 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v--~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~-~~~~l~~i~~~~~~~~~via~GGI 263 (344)
..+.++.+++. ++++.++.. ...+.++.+.++|+|.|+++++--.+...+.. .+..+.++.+.. ++|||+ |+|
T Consensus 120 ~~~iv~~~~~~-~V~v~vr~~~~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~--~ipVIa-G~V 195 (368)
T PRK08649 120 ITERIAEIRDA-GVIVAVSLSPQRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYEL--DVPVIV-GGC 195 (368)
T ss_pred HHHHHHHHHhC-eEEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHC--CCCEEE-eCC
Confidence 34567778775 555555442 23477899999999999995421111111111 234455555544 699999 999
Q ss_pred CCHHHHHHHHHcCCCEEEEch
Q 019244 264 RRGTDVFKALALGASGIFIGR 284 (344)
Q Consensus 264 r~g~dv~kalalGAd~V~ig~ 284 (344)
.|.+++.+++.+|||+|++|+
T Consensus 196 ~t~e~A~~l~~aGAD~V~VG~ 216 (368)
T PRK08649 196 VTYTTALHLMRTGAAGVLVGI 216 (368)
T ss_pred CCHHHHHHHHHcCCCEEEECC
Confidence 999999999999999999995
|
|
| >cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00046 Score=63.21 Aligned_cols=88 Identities=25% Similarity=0.434 Sum_probs=63.4
Q ss_pred HHHHHH---HhcCCcEEEEee---------cCHHH----HHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccC
Q 019244 190 DVKWLQ---TITKLPILVKGV---------LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQG 253 (344)
Q Consensus 190 ~i~~i~---~~~~~PvivK~v---------~~~~~----a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~ 253 (344)
.+++++ ..+++|+++=.- .+.+. ++.+.++|+|+|.++..+ .++.+.++.+..
T Consensus 110 ~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~~~GaD~Ik~~~~~---------~~~~~~~i~~~~-- 178 (235)
T cd00958 110 ELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARIGAELGADIVKTKYTG---------DAESFKEVVEGC-- 178 (235)
T ss_pred HHHHHHHHHHHcCCCEEEEEeccCCcccCccCHHHHHHHHHHHHHHCCCEEEecCCC---------CHHHHHHHHhcC--
Confidence 455544 456899887221 12333 455889999999996432 356677777655
Q ss_pred CCcEEEecCC--CCHHH----HHHHHHcCCCEEEEchHHHH
Q 019244 254 RIPVFLDGGV--RRGTD----VFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 254 ~~~via~GGI--r~g~d----v~kalalGAd~V~ig~~~l~ 288 (344)
++||+++||+ .+..| +..++.+||+.|.+||.++.
T Consensus 179 ~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg~~i~~ 219 (235)
T cd00958 179 PVPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVGRNIFQ 219 (235)
T ss_pred CCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEechhhhc
Confidence 6899999998 66666 77788999999999999985
|
Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies. |
| >COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0073 Score=56.20 Aligned_cols=123 Identities=22% Similarity=0.308 Sum_probs=78.3
Q ss_pred cHHHHHHHHHh-cCCcEEEEeecCH------HH-HHHHHHcCCcEEEEcc---------------CCC---------CC-
Q 019244 187 SWKDVKWLQTI-TKLPILVKGVLTA------ED-ARIAVQAGAAGIIVSN---------------HGA---------RQ- 233 (344)
Q Consensus 187 ~~~~i~~i~~~-~~~PvivK~v~~~------~~-a~~~~~~G~d~I~v~~---------------~gG---------~~- 233 (344)
.++.++.+|+. .++|+++=.-.++ +. .+.+.++|+|++.+-. ||= +.
T Consensus 81 ~lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~~ 160 (265)
T COG0159 81 TLELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDPIFLVAPTTPD 160 (265)
T ss_pred HHHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCCcEEEEeCCCCCH
Confidence 56788888865 5788876443222 33 6788899999888831 100 00
Q ss_pred ------------------CC--Cch------hhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHH
Q 019244 234 ------------------LD--YVP------ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 287 (344)
Q Consensus 234 ------------------~~--~g~------~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l 287 (344)
.. .|. ...+.+..+++.. ++||..-=||++++++.+.... ||+|.+|+++.
T Consensus 161 ~rl~~i~~~a~GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~--~~Pv~vGFGIs~~e~~~~v~~~-ADGVIVGSAiV 237 (265)
T COG0159 161 ERLKKIAEAASGFIYYVSRMGVTGARNPVSADVKELVKRVRKYT--DVPVLVGFGISSPEQAAQVAEA-ADGVIVGSAIV 237 (265)
T ss_pred HHHHHHHHhCCCcEEEEecccccCCCcccchhHHHHHHHHHHhc--CCCeEEecCcCCHHHHHHHHHh-CCeEEEcHHHH
Confidence 00 111 1234455555544 8999998899999999999999 99999999999
Q ss_pred HHhhhcChHHHHHHHHHHHHHHHHH
Q 019244 288 YSLAAEGEKGVRRVLEMLREEFELA 312 (344)
Q Consensus 288 ~~~~~~G~~~v~~~l~~l~~el~~~ 312 (344)
.-+.....+...+-+..+.++|+..
T Consensus 238 ~~i~~~~~~~~~~~~~~l~~~l~~~ 262 (265)
T COG0159 238 KIIEEGLDEEALEELRALVKELKAA 262 (265)
T ss_pred HHHHhccchhhHHHHHHHHHHHHHH
Confidence 8765322111223344555555543
|
|
| >PRK06512 thiamine-phosphate pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00062 Score=62.08 Aligned_cols=95 Identities=14% Similarity=0.062 Sum_probs=66.2
Q ss_pred HHHHHHhcCCcEEEEee--cCHHHHHHHHHcCCcEEEEccCCCC-CCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHH
Q 019244 191 VKWLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVSNHGAR-QLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 267 (344)
Q Consensus 191 i~~i~~~~~~PvivK~v--~~~~~a~~~~~~G~d~I~v~~~gG~-~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~ 267 (344)
+...|+..+--.++... .+.+++..+.+.|+|+|.++----+ ..+.-+..++.+.++.+.+ ++||++-||| +.+
T Consensus 100 ~~~~r~~~~~~~iiG~s~~~s~~~a~~A~~~gaDYv~~Gpv~t~tK~~~~p~gl~~l~~~~~~~--~iPvvAIGGI-~~~ 176 (221)
T PRK06512 100 LAEAIEKHAPKMIVGFGNLRDRHGAMEIGELRPDYLFFGKLGADNKPEAHPRNLSLAEWWAEMI--EIPCIVQAGS-DLA 176 (221)
T ss_pred HHHHHHhcCCCCEEEecCCCCHHHHHHhhhcCCCEEEECCCCCCCCCCCCCCChHHHHHHHHhC--CCCEEEEeCC-CHH
Confidence 44555544322345432 4678888899999999998643111 1111122355666666655 7999999999 799
Q ss_pred HHHHHHHcCCCEEEEchHHHH
Q 019244 268 DVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 268 dv~kalalGAd~V~ig~~~l~ 288 (344)
++.+++..||+.|.+-+.++.
T Consensus 177 n~~~~~~~GA~giAvisai~~ 197 (221)
T PRK06512 177 SAVEVAETGAEFVALERAVFD 197 (221)
T ss_pred HHHHHHHhCCCEEEEhHHhhC
Confidence 999999999999999999875
|
|
| >COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0003 Score=63.50 Aligned_cols=77 Identities=21% Similarity=0.321 Sum_probs=61.2
Q ss_pred cCHHHHHHHHHcCCcEEEEccCC-CCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHH
Q 019244 208 LTAEDARIAVQAGAAGIIVSNHG-ARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 286 (344)
Q Consensus 208 ~~~~~a~~~~~~G~d~I~v~~~g-G~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~ 286 (344)
.++-.++++.++|+.+|-=-+.. |+ ..|+-+.+.|.-+.+.. ++|||.|-||.+++|++.++.||+|+|.+-+++
T Consensus 139 dD~v~arrLee~GcaavMPl~aPIGS--g~G~~n~~~l~iiie~a--~VPviVDAGiG~pSdAa~aMElG~DaVL~NTAi 214 (262)
T COG2022 139 DDPVLARRLEEAGCAAVMPLGAPIGS--GLGLQNPYNLEIIIEEA--DVPVIVDAGIGTPSDAAQAMELGADAVLLNTAI 214 (262)
T ss_pred CCHHHHHHHHhcCceEeccccccccC--CcCcCCHHHHHHHHHhC--CCCEEEeCCCCChhHHHHHHhcccceeehhhHh
Confidence 45677999999999988532211 21 13556777888787766 899999999999999999999999999999987
Q ss_pred HH
Q 019244 287 VY 288 (344)
Q Consensus 287 l~ 288 (344)
-.
T Consensus 215 A~ 216 (262)
T COG2022 215 AR 216 (262)
T ss_pred hc
Confidence 54
|
|
| >cd04732 HisA HisA | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00023 Score=64.96 Aligned_cols=76 Identities=34% Similarity=0.436 Sum_probs=60.7
Q ss_pred HHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 210 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
.+.|+.+.+.|+|.+.|..--+. ........+.+.++.+.+ .+|+++.|||++.+|+.+++..|||.|++|+..+.
T Consensus 32 ~~~a~~~~~~g~d~l~v~dl~~~-~~~~~~~~~~i~~i~~~~--~~pv~~~GgI~~~e~~~~~~~~Gad~vvigs~~l~ 107 (234)
T cd04732 32 VEVAKKWEEAGAKWLHVVDLDGA-KGGEPVNLELIEEIVKAV--GIPVQVGGGIRSLEDIERLLDLGVSRVIIGTAAVK 107 (234)
T ss_pred HHHHHHHHHcCCCEEEEECCCcc-ccCCCCCHHHHHHHHHhc--CCCEEEeCCcCCHHHHHHHHHcCCCEEEECchHHh
Confidence 46688888999999999743211 112344677888887776 69999999999999999999999999999998764
|
Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. |
| >PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00032 Score=73.69 Aligned_cols=49 Identities=16% Similarity=0.243 Sum_probs=40.4
Q ss_pred HHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHH
Q 019244 241 IMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 289 (344)
Q Consensus 241 ~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~ 289 (344)
+....++...++.++.+|+.+||.+..|+.++..+|||+|.||+.+|.+
T Consensus 198 ~~~t~~L~~~ip~~~~~VsESGI~~~~d~~~l~~~G~davLIGeslm~~ 246 (695)
T PRK13802 198 VNKYNELAADLPDDVIKVAESGVFGAVEVEDYARAGADAVLVGEGVATA 246 (695)
T ss_pred HHHHHHHHhhCCCCcEEEEcCCCCCHHHHHHHHHCCCCEEEECHHhhCC
Confidence 3344455556666788999999999999999999999999999998763
|
|
| >TIGR00734 hisAF_rel hisA/hisF family protein | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00018 Score=65.52 Aligned_cols=71 Identities=18% Similarity=0.265 Sum_probs=53.3
Q ss_pred HHHHHHcCCcEEEEcc--CCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHH
Q 019244 213 ARIAVQAGAAGIIVSN--HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 289 (344)
Q Consensus 213 a~~~~~~G~d~I~v~~--~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~ 289 (344)
...+.+.|+ .+.+.. .-|+ ...+.++.+.++.+.. ++|||++|||+|.+|+.++..+||++|.+|++++++
T Consensus 147 ~~~~~~~g~-~ii~tdI~~dGt---~~G~d~eli~~i~~~~--~~pvia~GGi~s~ed~~~l~~~Ga~~vivgsal~~g 219 (221)
T TIGR00734 147 RDFLNSFDY-GLIVLDIHSVGT---MKGPNLELLTKTLELS--EHPVMLGGGISGVEDLELLKEMGVSAVLVATAVHKG 219 (221)
T ss_pred HHHHHhcCC-EEEEEECCcccc---CCCCCHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHHHCCCCEEEEhHHhhCC
Confidence 344556787 555432 1122 1235678888888765 799999999999999999988999999999998753
|
This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown. |
| >PRK07107 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0012 Score=67.14 Aligned_cols=68 Identities=16% Similarity=0.102 Sum_probs=51.1
Q ss_pred HHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 019244 211 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 283 (344)
Q Consensus 211 ~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig 283 (344)
+.++.+.++|+|.|+|++.-|+ ....++.+.++++..+.+++ +..|-|-+.+++..++.+|||++-+|
T Consensus 245 ~ra~~Lv~aGvd~i~vd~a~g~----~~~~~~~i~~ir~~~~~~~~-V~aGnV~t~e~a~~li~aGAd~I~vg 312 (502)
T PRK07107 245 ERVPALVEAGADVLCIDSSEGY----SEWQKRTLDWIREKYGDSVK-VGAGNVVDREGFRYLAEAGADFVKVG 312 (502)
T ss_pred HHHHHHHHhCCCeEeecCcccc----cHHHHHHHHHHHHhCCCCce-EEeccccCHHHHHHHHHcCCCEEEEC
Confidence 5578899999999999764332 12346778888776643344 44588999999999999999998774
|
|
| >PRK06806 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.018 Score=54.45 Aligned_cols=109 Identities=19% Similarity=0.277 Sum_probs=75.0
Q ss_pred ecCHHHHHHHHH-cCCcEEEEc--c-CCCCCCCCchhhHHHHHHHHHHccCCCcEEEec--CCCCHHHHHHHHHcCCCEE
Q 019244 207 VLTAEDARIAVQ-AGAAGIIVS--N-HGARQLDYVPATIMALEEVVKATQGRIPVFLDG--GVRRGTDVFKALALGASGI 280 (344)
Q Consensus 207 v~~~~~a~~~~~-~G~d~I~v~--~-~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~G--GIr~g~dv~kalalGAd~V 280 (344)
..++++++.+.+ .|+|++-++ + ||-. .+.-.-.++.|.++++.+ ++|+++-| ||. .+++.+++..|++.|
T Consensus 152 ~t~~eea~~f~~~tg~DyLAvaiG~~hg~~-~~~~~l~~~~L~~i~~~~--~iPlV~hG~SGI~-~e~~~~~i~~G~~ki 227 (281)
T PRK06806 152 LTSTTEAKRFAEETDVDALAVAIGNAHGMY-NGDPNLRFDRLQEINDVV--HIPLVLHGGSGIS-PEDFKKCIQHGIRKI 227 (281)
T ss_pred eCCHHHHHHHHHhhCCCEEEEccCCCCCCC-CCCCccCHHHHHHHHHhc--CCCEEEECCCCCC-HHHHHHHHHcCCcEE
Confidence 368999999874 599999994 3 4422 111123578899998877 79999999 887 788999999999999
Q ss_pred EEchHHHHHhhh-------cCh-----HHHHHHHHHHHHHHHHHHHHhCCC
Q 019244 281 FIGRPVVYSLAA-------EGE-----KGVRRVLEMLREEFELAMALSGCR 319 (344)
Q Consensus 281 ~ig~~~l~~~~~-------~G~-----~~v~~~l~~l~~el~~~m~~~G~~ 319 (344)
-+.+.+..+... ... +-.....+.+++..+..|..+|+.
T Consensus 228 nv~T~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gs~ 278 (281)
T PRK06806 228 NVATATFNSVITAVNNLVLNTPYSDYFTYHQDVIKAAYENVKKHMQIFGSE 278 (281)
T ss_pred EEhHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999988764211 000 112233345566666677776653
|
|
| >TIGR00693 thiE thiamine-phosphate pyrophosphorylase | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00078 Score=59.80 Aligned_cols=80 Identities=23% Similarity=0.245 Sum_probs=59.8
Q ss_pred ecCHHHHHHHHHcCCcEEEEccCCCCCCCC---chhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 019244 207 VLTAEDARIAVQAGAAGIIVSNHGARQLDY---VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 283 (344)
Q Consensus 207 v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~---g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig 283 (344)
+-+.+++..+.+.|+|+|.++.-.-+.... .+..++.+.++.+... ++||++.||| +.+++.+++.+||++|.++
T Consensus 103 ~h~~~e~~~a~~~g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~~-~~pv~a~GGI-~~~~~~~~~~~G~~gva~~ 180 (196)
T TIGR00693 103 THNLEELAEAEAEGADYIGFGPIFPTPTKKDPAPPAGVELLREIAATSI-DIPIVAIGGI-TLENAAEVLAAGADGVAVV 180 (196)
T ss_pred CCCHHHHHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcC-CCCEEEECCc-CHHHHHHHHHcCCCEEEEh
Confidence 467888889999999999986532221111 1124566776665442 5999999999 5899999999999999999
Q ss_pred hHHHH
Q 019244 284 RPVVY 288 (344)
Q Consensus 284 ~~~l~ 288 (344)
+.++.
T Consensus 181 ~~i~~ 185 (196)
T TIGR00693 181 SAIMQ 185 (196)
T ss_pred HHhhC
Confidence 99874
|
This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI. |
| >TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00071 Score=63.35 Aligned_cols=86 Identities=23% Similarity=0.229 Sum_probs=66.3
Q ss_pred HHHHHHHhcC-CcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHH
Q 019244 190 DVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 268 (344)
Q Consensus 190 ~i~~i~~~~~-~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~d 268 (344)
.++.+|+..+ ...+.-.+-|.++++.+.++|+|+|-+++. ..+.+.++.+.++.++|+.++|||. .++
T Consensus 167 av~~~r~~~~~~~~Igvev~t~eea~~A~~~gaDyI~ld~~----------~~e~lk~~v~~~~~~ipi~AsGGI~-~~n 235 (265)
T TIGR00078 167 AVKRARAAAPFALKIEVEVESLEEAEEAAEAGADIIMLDNM----------KPEEIKEAVQLLKGRVLLEASGGIT-LDN 235 (265)
T ss_pred HHHHHHHhCCCCCeEEEEeCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhcCCCcEEEECCCC-HHH
Confidence 4888888774 223434568999999999999999988653 2255666665554469999999995 899
Q ss_pred HHHHHHcCCCEEEEchHH
Q 019244 269 VFKALALGASGIFIGRPV 286 (344)
Q Consensus 269 v~kalalGAd~V~ig~~~ 286 (344)
+....+.|||.+.+|...
T Consensus 236 i~~~a~~Gvd~Isvgait 253 (265)
T TIGR00078 236 LEEYAETGVDVISSGALT 253 (265)
T ss_pred HHHHHHcCCCEEEeCHHH
Confidence 999999999999996544
|
Synonym: quinolinate phosphoribosyltransferase (decarboxylating) |
| >PLN02334 ribulose-phosphate 3-epimerase | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00098 Score=61.00 Aligned_cols=116 Identities=21% Similarity=0.235 Sum_probs=72.9
Q ss_pred HHHHHHHHhcCCcEEEEeec-C-HHHHHHHHHcC-CcEEEEcc-CCCC-CCCCchhhHHHHHHHHHHccCCCcEEEecCC
Q 019244 189 KDVKWLQTITKLPILVKGVL-T-AEDARIAVQAG-AAGIIVSN-HGAR-QLDYVPATIMALEEVVKATQGRIPVFLDGGV 263 (344)
Q Consensus 189 ~~i~~i~~~~~~PvivK~v~-~-~~~a~~~~~~G-~d~I~v~~-~gG~-~~~~g~~~~~~l~~i~~~~~~~~~via~GGI 263 (344)
+.++++++. ++-+.+-... | .+.++...+.| +|.|.+.. +.|. ...+.+..++.+.++++.. .++||.++|||
T Consensus 106 ~~~~~i~~~-g~~iGls~~~~t~~~~~~~~~~~~~~Dyi~~~~v~pg~~~~~~~~~~~~~i~~~~~~~-~~~~I~a~GGI 183 (229)
T PLN02334 106 RLIQQIKSA-GMKAGVVLNPGTPVEAVEPVVEKGLVDMVLVMSVEPGFGGQSFIPSMMDKVRALRKKY-PELDIEVDGGV 183 (229)
T ss_pred HHHHHHHHC-CCeEEEEECCCCCHHHHHHHHhccCCCEEEEEEEecCCCccccCHHHHHHHHHHHHhC-CCCcEEEeCCC
Confidence 456666653 4322222211 3 44455555664 99996643 2222 1224455666777776653 35799999999
Q ss_pred CCHHHHHHHHHcCCCEEEEchHHHHHhhhcChHHHHHHHHHHHHHHHHHH
Q 019244 264 RRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAM 313 (344)
Q Consensus 264 r~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~el~~~m 313 (344)
+.+++.+.+++|||.+.+|++++.+ +.....++.++++++..|
T Consensus 184 -~~e~i~~l~~aGad~vvvgsai~~~------~d~~~~~~~l~~~~~~~~ 226 (229)
T PLN02334 184 -GPSTIDKAAEAGANVIVAGSAVFGA------PDYAEVISGLRASVEKAA 226 (229)
T ss_pred -CHHHHHHHHHcCCCEEEEChHHhCC------CCHHHHHHHHHHHHHHhh
Confidence 5899999999999999999997632 223455666666666654
|
|
| >COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0025 Score=58.94 Aligned_cols=96 Identities=18% Similarity=0.252 Sum_probs=73.5
Q ss_pred HHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHH
Q 019244 190 DVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDV 269 (344)
Q Consensus 190 ~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv 269 (344)
.+.......++-++| ++-+.++++++.++|++-|-|-|..=+.+.. .++...++...++.+.-+|.-+||.+..|+
T Consensus 147 el~~~A~~LGm~~LV-EVh~~eEl~rAl~~ga~iIGINnRdL~tf~v---dl~~t~~la~~~p~~~~~IsESGI~~~~dv 222 (254)
T COG0134 147 ELVDRAHELGMEVLV-EVHNEEELERALKLGAKIIGINNRDLTTLEV---DLETTEKLAPLIPKDVILISESGISTPEDV 222 (254)
T ss_pred HHHHHHHHcCCeeEE-EECCHHHHHHHHhCCCCEEEEeCCCcchhee---cHHHHHHHHhhCCCCcEEEecCCCCCHHHH
Confidence 344444445777665 5789999999999999999887754333322 233445555666667889999999999999
Q ss_pred HHHHHcCCCEEEEchHHHHH
Q 019244 270 FKALALGASGIFIGRPVVYS 289 (344)
Q Consensus 270 ~kalalGAd~V~ig~~~l~~ 289 (344)
.+....||+++.||+.+|..
T Consensus 223 ~~l~~~ga~a~LVG~slM~~ 242 (254)
T COG0134 223 RRLAKAGADAFLVGEALMRA 242 (254)
T ss_pred HHHHHcCCCEEEecHHHhcC
Confidence 99999999999999999874
|
|
| >PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00053 Score=68.62 Aligned_cols=94 Identities=21% Similarity=0.256 Sum_probs=67.0
Q ss_pred HHHHHHHhcCCcEEEEee--cC-HHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCH
Q 019244 190 DVKWLQTITKLPILVKGV--LT-AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 266 (344)
Q Consensus 190 ~i~~i~~~~~~PvivK~v--~~-~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g 266 (344)
.++.+++ .++++++... .+ .+.++.+.+.|+|+|.+. .|......++...+.++++++.. ++||++.||| +.
T Consensus 99 ~i~~a~~-~G~~~~~g~~s~~t~~e~~~~a~~~GaD~I~~~-pg~~~~~~~~~~~~~l~~l~~~~--~iPI~a~GGI-~~ 173 (430)
T PRK07028 99 AVRAARK-YGVRLMADLINVPDPVKRAVELEELGVDYINVH-VGIDQQMLGKDPLELLKEVSEEV--SIPIAVAGGL-DA 173 (430)
T ss_pred HHHHHHH-cCCEEEEEecCCCCHHHHHHHHHhcCCCEEEEE-eccchhhcCCChHHHHHHHHhhC--CCcEEEECCC-CH
Confidence 3555555 5788776422 23 466788899999999775 22211112233456777776654 5999999999 58
Q ss_pred HHHHHHHHcCCCEEEEchHHHH
Q 019244 267 TDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 267 ~dv~kalalGAd~V~ig~~~l~ 288 (344)
.++.++++.||+.+.+||.++.
T Consensus 174 ~n~~~~l~aGAdgv~vGsaI~~ 195 (430)
T PRK07028 174 ETAAKAVAAGADIVIVGGNIIK 195 (430)
T ss_pred HHHHHHHHcCCCEEEEChHHcC
Confidence 9999999999999999999864
|
|
| >PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.003 Score=59.53 Aligned_cols=88 Identities=25% Similarity=0.166 Sum_probs=67.4
Q ss_pred HHHHHHHHhcCCcEEE-EeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHH
Q 019244 189 KDVKWLQTITKLPILV-KGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 267 (344)
Q Consensus 189 ~~i~~i~~~~~~Pviv-K~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~ 267 (344)
+.++.+|+..+-..++ =.+.+.++++.+.+.|+|+|-+++ . ..+.+.++.+..+.++|+.++||| +.+
T Consensus 176 ~~v~~aR~~~~~~~~Igvsv~tleea~~A~~~gaDyI~lD~-------~---~~e~l~~~~~~~~~~i~i~AiGGI-t~~ 244 (277)
T PRK08072 176 KAVTSVREKLGHMVKIEVETETEEQVREAVAAGADIIMFDN-------R---TPDEIREFVKLVPSAIVTEASGGI-TLE 244 (277)
T ss_pred HHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHcCCCEEEECC-------C---CHHHHHHHHHhcCCCceEEEECCC-CHH
Confidence 4588888877522222 234789999999999999998853 2 235566666655446889999999 599
Q ss_pred HHHHHHHcCCCEEEEchHHH
Q 019244 268 DVFKALALGASGIFIGRPVV 287 (344)
Q Consensus 268 dv~kalalGAd~V~ig~~~l 287 (344)
++....+.|+|.+.+|.+..
T Consensus 245 ni~~~a~~Gvd~IAvg~l~~ 264 (277)
T PRK08072 245 NLPAYGGTGVDYISLGFLTH 264 (277)
T ss_pred HHHHHHHcCCCEEEEChhhc
Confidence 99999999999999998764
|
|
| >PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00033 Score=66.69 Aligned_cols=78 Identities=19% Similarity=0.300 Sum_probs=60.3
Q ss_pred ecCHHHHHHHHHcCCcEEEEccC-CCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchH
Q 019244 207 VLTAEDARIAVQAGAAGIIVSNH-GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 285 (344)
Q Consensus 207 v~~~~~a~~~~~~G~d~I~v~~~-gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~ 285 (344)
..++..++++.++|+-+|---+. =|+ ..|....+.+..+.+.. ++||+.++||.+++|+.+|+.||||+|.+.+.
T Consensus 205 ~~d~~~a~~l~~~g~~avmPl~~pIGs--g~gv~~p~~i~~~~e~~--~vpVivdAGIg~~sda~~AmelGadgVL~nSa 280 (326)
T PRK11840 205 SDDPIAAKRLEDAGAVAVMPLGAPIGS--GLGIQNPYTIRLIVEGA--TVPVLVDAGVGTASDAAVAMELGCDGVLMNTA 280 (326)
T ss_pred CCCHHHHHHHHhcCCEEEeeccccccC--CCCCCCHHHHHHHHHcC--CCcEEEeCCCCCHHHHHHHHHcCCCEEEEcce
Confidence 47899999999999955543111 011 12345667777777664 79999999999999999999999999999998
Q ss_pred HHH
Q 019244 286 VVY 288 (344)
Q Consensus 286 ~l~ 288 (344)
+..
T Consensus 281 Ia~ 283 (326)
T PRK11840 281 IAE 283 (326)
T ss_pred ecc
Confidence 864
|
|
| >PRK10605 N-ethylmaleimide reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00067 Score=66.38 Aligned_cols=95 Identities=13% Similarity=-0.054 Sum_probs=68.2
Q ss_pred HHHHHHHHHhcC-CcEEEEee-----------cCHHH-----HHHHHHcCCcEEEEccCCCCCCCCchh-hHHHHHHHHH
Q 019244 188 WKDVKWLQTITK-LPILVKGV-----------LTAED-----ARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVK 249 (344)
Q Consensus 188 ~~~i~~i~~~~~-~PvivK~v-----------~~~~~-----a~~~~~~G~d~I~v~~~gG~~~~~g~~-~~~~l~~i~~ 249 (344)
.+.|+.||+.++ -+|.+|.. .+.++ ++.+.+.|+|+|.|+.... ....+ .......+++
T Consensus 213 ~Eiv~aVr~~vg~~~igvRis~~~~~~~~~~G~~~~e~~~~~~~~L~~~giD~i~vs~~~~---~~~~~~~~~~~~~ik~ 289 (362)
T PRK10605 213 LEVVDAGIAEWGADRIGIRISPLGTFNNVDNGPNEEADALYLIEQLGKRGIAYLHMSEPDW---AGGEPYSDAFREKVRA 289 (362)
T ss_pred HHHHHHHHHHcCCCeEEEEECCccccccCCCCCCHHHHHHHHHHHHHHcCCCEEEeccccc---cCCccccHHHHHHHHH
Confidence 467999999884 25788763 23343 5677889999999985211 11111 2233355666
Q ss_pred HccCCCcEEEecCCCCHHHHHHHHHcC-CCEEEEchHHHH
Q 019244 250 ATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 288 (344)
Q Consensus 250 ~~~~~~~via~GGIr~g~dv~kalalG-Ad~V~ig~~~l~ 288 (344)
.+ ++||++.|++ ++..+.++|+-| ||+|++||+++.
T Consensus 290 ~~--~~pv~~~G~~-~~~~ae~~i~~G~~D~V~~gR~~ia 326 (362)
T PRK10605 290 RF--HGVIIGAGAY-TAEKAETLIGKGLIDAVAFGRDYIA 326 (362)
T ss_pred HC--CCCEEEeCCC-CHHHHHHHHHcCCCCEEEECHHhhh
Confidence 65 6899999996 899999999998 999999999985
|
|
| >PRK14024 phosphoribosyl isomerase A; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0005 Score=63.46 Aligned_cols=75 Identities=27% Similarity=0.231 Sum_probs=60.2
Q ss_pred HHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 210 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
.+.|+...+.|++.+.+..--+. .......+.+.++.+.+ .+||.+.|||||.+|+.+++.+||+-|.+|+..+.
T Consensus 35 ~~~a~~~~~~g~~~l~ivDLd~~--~g~~~n~~~i~~i~~~~--~~pv~vgGGirs~edv~~~l~~Ga~kvviGs~~l~ 109 (241)
T PRK14024 35 LDAALAWQRDGAEWIHLVDLDAA--FGRGSNRELLAEVVGKL--DVKVELSGGIRDDESLEAALATGCARVNIGTAALE 109 (241)
T ss_pred HHHHHHHHHCCCCEEEEEecccc--CCCCccHHHHHHHHHHc--CCCEEEcCCCCCHHHHHHHHHCCCCEEEECchHhC
Confidence 36688888999998887542111 12245678888888877 69999999999999999999999999999998875
|
|
| >PRK02615 thiamine-phosphate pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.001 Score=64.55 Aligned_cols=95 Identities=20% Similarity=0.219 Sum_probs=67.3
Q ss_pred HHHHHHhcCCcEEEEe-ecCHHHHHHHHHcCCcEEEEccCCCCC--CCCchhhHHHHHHHHHHccCCCcEEEecCCCCHH
Q 019244 191 VKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSNHGARQ--LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 267 (344)
Q Consensus 191 i~~i~~~~~~PvivK~-v~~~~~a~~~~~~G~d~I~v~~~gG~~--~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~ 267 (344)
+...|+..+--.++.. +-+++++..+.+.|+|+|.++-...+. .+..+..++.+..+.+.. ++|+++-|||. ..
T Consensus 230 ~~~aR~llg~~~iIG~S~Hs~~e~~~A~~~GaDYI~lGPvf~T~tKp~~~~~Gle~l~~~~~~~--~iPv~AiGGI~-~~ 306 (347)
T PRK02615 230 LAVARQLLGPEKIIGRSTTNPEEMAKAIAEGADYIGVGPVFPTPTKPGKAPAGLEYLKYAAKEA--PIPWFAIGGID-KS 306 (347)
T ss_pred HHHHHHhcCCCCEEEEecCCHHHHHHHHHcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhC--CCCEEEECCCC-HH
Confidence 3445554432223333 367899999999999999987533221 111233456677666554 79999999995 89
Q ss_pred HHHHHHHcCCCEEEEchHHHH
Q 019244 268 DVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 268 dv~kalalGAd~V~ig~~~l~ 288 (344)
++.+.+++||+.|.+++.++.
T Consensus 307 ni~~l~~~Ga~gVAvisaI~~ 327 (347)
T PRK02615 307 NIPEVLQAGAKRVAVVRAIMG 327 (347)
T ss_pred HHHHHHHcCCcEEEEeHHHhC
Confidence 999999999999999999874
|
|
| >cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00072 Score=63.43 Aligned_cols=87 Identities=23% Similarity=0.232 Sum_probs=68.2
Q ss_pred HHHHHHHhcC-CcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHH
Q 019244 190 DVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 268 (344)
Q Consensus 190 ~i~~i~~~~~-~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~d 268 (344)
.++.+|+..+ -..|.=.+-+.++++.+.++|+|+|-+++. ..+.+.++.+..+.++|+.++|||. ...
T Consensus 171 ~v~~~r~~~~~~~~Igvev~s~eea~~A~~~gaDyI~ld~~----------~~e~l~~~~~~~~~~ipi~AiGGI~-~~n 239 (268)
T cd01572 171 AVRRARAAAPFTLKIEVEVETLEQLKEALEAGADIIMLDNM----------SPEELREAVALLKGRVLLEASGGIT-LEN 239 (268)
T ss_pred HHHHHHHhCCCCCeEEEEECCHHHHHHHHHcCCCEEEECCc----------CHHHHHHHHHHcCCCCcEEEECCCC-HHH
Confidence 5788888764 223333467899999999999999998753 2466667666554479999999995 899
Q ss_pred HHHHHHcCCCEEEEchHHH
Q 019244 269 VFKALALGASGIFIGRPVV 287 (344)
Q Consensus 269 v~kalalGAd~V~ig~~~l 287 (344)
+.++.+.|+|.+.++++..
T Consensus 240 i~~~a~~Gvd~Iav~sl~~ 258 (268)
T cd01572 240 IRAYAETGVDYISVGALTH 258 (268)
T ss_pred HHHHHHcCCCEEEEEeeec
Confidence 9999999999999998654
|
It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other. |
| >PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0081 Score=55.02 Aligned_cols=62 Identities=24% Similarity=0.354 Sum_probs=41.6
Q ss_pred HHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcChHHHHHHHHHHHHHHHH
Q 019244 242 MALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFEL 311 (344)
Q Consensus 242 ~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~el~~ 311 (344)
+-+.++++.. ....|.++|||+ .+.+.++...|||.+.+||+++.+ +...+.++.++++++.
T Consensus 162 ~ki~~~~~~~-~~~~I~VdGGI~-~~ti~~~~~aGad~iVvGsaI~~a------~d~~~~~~~i~~~~~~ 223 (228)
T PTZ00170 162 PKVRELRKRY-PHLNIQVDGGIN-LETIDIAADAGANVIVAGSSIFKA------KDRKQAIELLRESVQK 223 (228)
T ss_pred HHHHHHHHhc-ccCeEEECCCCC-HHHHHHHHHcCCCEEEEchHHhCC------CCHHHHHHHHHHHHHH
Confidence 3344444433 257899999999 467888899999999999996531 1233455566655554
|
|
| >cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0013 Score=61.82 Aligned_cols=86 Identities=28% Similarity=0.298 Sum_probs=65.0
Q ss_pred HHHHHHHhcC-CcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccC--CCcEEEecCCCCH
Q 019244 190 DVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQG--RIPVFLDGGVRRG 266 (344)
Q Consensus 190 ~i~~i~~~~~-~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~--~~~via~GGIr~g 266 (344)
.++.+|+..+ ...+.-.+.|.+++..+.++|+|.|-+++.. + +.+.++.+.++. ++||.++|||. .
T Consensus 170 ~v~~~r~~~~~~~~I~vev~t~eea~~A~~~gaD~I~ld~~~-------~---e~l~~~v~~i~~~~~i~i~asGGIt-~ 238 (269)
T cd01568 170 AVKRARAAAPFEKKIEVEVETLEEAEEALEAGADIIMLDNMS-------P---EELKEAVKLLKGLPRVLLEASGGIT-L 238 (269)
T ss_pred HHHHHHHhCCCCCeEEEecCCHHHHHHHHHcCCCEEEECCCC-------H---HHHHHHHHHhccCCCeEEEEECCCC-H
Confidence 5888888774 2234345689999999999999999997632 2 344444444333 78999999997 8
Q ss_pred HHHHHHHHcCCCEEEEchHH
Q 019244 267 TDVFKALALGASGIFIGRPV 286 (344)
Q Consensus 267 ~dv~kalalGAd~V~ig~~~ 286 (344)
..+.++.+.|||.+.+|..+
T Consensus 239 ~ni~~~a~~Gad~Isvgal~ 258 (269)
T cd01568 239 ENIRAYAETGVDVISTGALT 258 (269)
T ss_pred HHHHHHHHcCCCEEEEcHHH
Confidence 99999999999999997654
|
It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other. |
| >TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.028 Score=53.12 Aligned_cols=108 Identities=25% Similarity=0.328 Sum_probs=76.6
Q ss_pred cCHHHHHHHHH-cCCcEEEEc-c--CCCCCCCCchhhHHHHHHHHHHccCCCcEEEec--CCCCHHHHHHHHHcCCCEEE
Q 019244 208 LTAEDARIAVQ-AGAAGIIVS-N--HGARQLDYVPATIMALEEVVKATQGRIPVFLDG--GVRRGTDVFKALALGASGIF 281 (344)
Q Consensus 208 ~~~~~a~~~~~-~G~d~I~v~-~--~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~G--GIr~g~dv~kalalGAd~V~ 281 (344)
.++++++.+.+ .|+|++.++ | ||-. .....-.++.|.++++.+ ++|+.+=| ||. .+++.+++.+|++.|-
T Consensus 153 t~~eea~~f~~~tgvD~Lavs~Gt~hg~~-~~~~~l~~e~L~~i~~~~--~iPlv~hGgSGi~-~e~i~~~i~~Gi~kiN 228 (282)
T TIGR01859 153 ADPDEAEQFVKETGVDYLAAAIGTSHGKY-KGEPGLDFERLKEIKELT--NIPLVLHGASGIP-EEQIKKAIKLGIAKIN 228 (282)
T ss_pred CCHHHHHHHHHHHCcCEEeeccCcccccc-CCCCccCHHHHHHHHHHh--CCCEEEECCCCCC-HHHHHHHHHcCCCEEE
Confidence 58999999986 999999975 2 3321 111223467888988877 69999999 987 6889999999999999
Q ss_pred EchHHHHHhhh-------cC------hHHHHHHHHHHHHHHHHHHHHhCCC
Q 019244 282 IGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 319 (344)
Q Consensus 282 ig~~~l~~~~~-------~G------~~~v~~~l~~l~~el~~~m~~~G~~ 319 (344)
+++-+..+... .. ..-.....+.+.+.++..|..+|..
T Consensus 229 v~T~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~gs~ 279 (282)
T TIGR01859 229 IDTDCRIAFTAAIRKVLTEKKDEYDPRKILGPAREAIKETVKEKMRLFGSA 279 (282)
T ss_pred ECcHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99987654221 00 1123344556777777888887754
|
This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase. |
| >PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0007 Score=62.98 Aligned_cols=98 Identities=20% Similarity=0.237 Sum_probs=71.5
Q ss_pred cHHHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEcc----C-----------------------------CC--
Q 019244 187 SWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSN----H-----------------------------GA-- 231 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~----~-----------------------------gG-- 231 (344)
+++.|++|++ +++||-+.+-...++++.+.++||+.|++.+ . .|
T Consensus 72 n~~~i~~i~~-~~~~vqvGGGIR~e~i~~~l~~Ga~rViigT~Av~~~~~~p~~v~~~~~~~G~~~IvvsiD~k~~~g~~ 150 (262)
T PLN02446 72 LAAALEALRA-YPGGLQVGGGVNSENAMSYLDAGASHVIVTSYVFRDGQIDLERLKDLVRLVGKQRLVLDLSCRKKDGRY 150 (262)
T ss_pred cHHHHHHHHh-CCCCEEEeCCccHHHHHHHHHcCCCEEEEchHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEEEecCCCE
Confidence 4667888888 7788888776445888888888888888852 0 11
Q ss_pred C-------C---------------------------CCC--chhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHc
Q 019244 232 R-------Q---------------------------LDY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL 275 (344)
Q Consensus 232 ~-------~---------------------------~~~--g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalal 275 (344)
. . .|+ ..+.++.+.++.+.. ++|||++|||+|.+|+.+...+
T Consensus 151 ~Va~~GW~~~t~~~~~e~~~~~~~~g~~eii~TdI~rDGtl~G~d~el~~~l~~~~--~ipVIASGGv~sleDi~~L~~~ 228 (262)
T PLN02446 151 YVVTDRWQKFSDLAVDEETLEFLAAYCDEFLVHGVDVEGKRLGIDEELVALLGEHS--PIPVTYAGGVRSLDDLERVKVA 228 (262)
T ss_pred EEEECCCcccCCCCHHHHHHHHHHhCCCEEEEEEEcCCCcccCCCHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHHc
Confidence 0 0 011 123455666666654 7999999999999999999988
Q ss_pred C--CCEEEEchHHH
Q 019244 276 G--ASGIFIGRPVV 287 (344)
Q Consensus 276 G--Ad~V~ig~~~l 287 (344)
| ...|.+|++++
T Consensus 229 g~g~~gvIvGkAl~ 242 (262)
T PLN02446 229 GGGRVDVTVGSALD 242 (262)
T ss_pred CCCCEEEEEEeeHH
Confidence 5 68899999983
|
|
| >PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0049 Score=58.26 Aligned_cols=87 Identities=20% Similarity=0.191 Sum_probs=68.4
Q ss_pred HHHHHHHHhcC--CcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCH
Q 019244 189 KDVKWLQTITK--LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 266 (344)
Q Consensus 189 ~~i~~i~~~~~--~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g 266 (344)
+.++.+|+..+ .+|.| ++.|.++++.+.++|+|.|-++|. +.+.+.++.+.+++++.+.++|||. .
T Consensus 185 ~av~~~r~~~~~~~kIeV-Ev~tleea~~a~~agaDiImLDnm----------spe~l~~av~~~~~~~~leaSGGI~-~ 252 (290)
T PRK06559 185 KAIAQARAYAPFVKMVEV-EVESLAAAEEAAAAGADIIMLDNM----------SLEQIEQAITLIAGRSRIECSGNID-M 252 (290)
T ss_pred HHHHHHHHhCCCCCeEEE-ECCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhcCceEEEEECCCC-H
Confidence 45888888764 34443 568999999999999999999874 3345555555555688999999997 7
Q ss_pred HHHHHHHHcCCCEEEEchHHH
Q 019244 267 TDVFKALALGASGIFIGRPVV 287 (344)
Q Consensus 267 ~dv~kalalGAd~V~ig~~~l 287 (344)
+.+..+...|+|.+.+|.+..
T Consensus 253 ~ni~~yA~tGVD~Is~galth 273 (290)
T PRK06559 253 TTISRFRGLAIDYVSSGSLTH 273 (290)
T ss_pred HHHHHHHhcCCCEEEeCcccc
Confidence 888888889999999998664
|
|
| >COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0027 Score=57.36 Aligned_cols=95 Identities=20% Similarity=0.201 Sum_probs=70.3
Q ss_pred HHHHHHhcCCcEEEEee-cCHHHHHHHHHcCCcEEEEccCCCCCC--CCchhhHHHHHHHHHHccCCCcEEEecCCCCHH
Q 019244 191 VKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSNHGARQL--DYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 267 (344)
Q Consensus 191 i~~i~~~~~~PvivK~v-~~~~~a~~~~~~G~d~I~v~~~gG~~~--~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~ 267 (344)
+...++..+-..++... -+.+++..+.+.|+|+|.++.-..+.- +.-+..++.+.++.+.. .+|+++-|||. ..
T Consensus 94 ~~~ar~~~~~~~iIG~S~h~~eea~~A~~~g~DYv~~GpifpT~tK~~~~~~G~~~l~~~~~~~--~iP~vAIGGi~-~~ 170 (211)
T COG0352 94 LAEARELLGPGLIIGLSTHDLEEALEAEELGADYVGLGPIFPTSTKPDAPPLGLEGLREIRELV--NIPVVAIGGIN-LE 170 (211)
T ss_pred hHHHHHhcCCCCEEEeecCCHHHHHHHHhcCCCEEEECCcCCCCCCCCCCccCHHHHHHHHHhC--CCCEEEEcCCC-HH
Confidence 44455545444455543 578999999999999999865444432 22233466777776655 59999999997 89
Q ss_pred HHHHHHHcCCCEEEEchHHHH
Q 019244 268 DVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 268 dv~kalalGAd~V~ig~~~l~ 288 (344)
.+...+..||+.|.+-|.++.
T Consensus 171 nv~~v~~~Ga~gVAvvsai~~ 191 (211)
T COG0352 171 NVPEVLEAGADGVAVVSAITS 191 (211)
T ss_pred HHHHHHHhCCCeEEehhHhhc
Confidence 999999999999999999886
|
|
| >PLN02617 imidazole glycerol phosphate synthase hisHF | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00093 Score=68.50 Aligned_cols=47 Identities=19% Similarity=0.179 Sum_probs=38.7
Q ss_pred HHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHH-cCCCEEEEchHHHHH
Q 019244 241 IMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA-LGASGIFIGRPVVYS 289 (344)
Q Consensus 241 ~~~l~~i~~~~~~~~~via~GGIr~g~dv~kala-lGAd~V~ig~~~l~~ 289 (344)
++.+..+.+.+ ++|||++||+.+.+|+.+++. .||+++..++.|.+.
T Consensus 471 ~~l~~~v~~~~--~ipviasGG~g~~~d~~~~~~~~~~~a~~aa~~fh~~ 518 (538)
T PLN02617 471 IELVKLVSDAV--TIPVIASSGAGTPEHFSDVFSKTNASAALAAGIFHRK 518 (538)
T ss_pred HHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHhcCCccEEEEEeeeccC
Confidence 44455555554 799999999999999999997 679999999988773
|
|
| >PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0027 Score=56.89 Aligned_cols=99 Identities=27% Similarity=0.302 Sum_probs=66.6
Q ss_pred CCcHHHH----HHHHHhc-CCcEEEEee--cCH----HHHHHHHHcCCcEEEEccCCCCCC-----------CCchhhHH
Q 019244 185 SLSWKDV----KWLQTIT-KLPILVKGV--LTA----EDARIAVQAGAAGIIVSNHGARQL-----------DYVPATIM 242 (344)
Q Consensus 185 ~~~~~~i----~~i~~~~-~~PvivK~v--~~~----~~a~~~~~~G~d~I~v~~~gG~~~-----------~~g~~~~~ 242 (344)
.|..++| ++.|+.. ++|+.|-.- +.. +-|..+.++|+|.|.. -||+.- ...-||+.
T Consensus 99 ~f~a~eVL~Lt~~tR~LLP~~~LsVTVPHiL~ld~Qv~LA~~L~~~GaDiIQT--EGgtss~p~~~g~lglIekaapTLA 176 (242)
T PF04481_consen 99 RFSAEEVLALTRETRSLLPDITLSVTVPHILPLDQQVQLAEDLVKAGADIIQT--EGGTSSKPTSPGILGLIEKAAPTLA 176 (242)
T ss_pred eecHHHHHHHHHHHHHhCCCCceEEecCccccHHHHHHHHHHHHHhCCcEEEc--CCCCCCCCCCcchHHHHHHHhHHHH
Confidence 4444444 4444444 466665432 322 4488999999999866 444321 12346777
Q ss_pred HHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 243 ALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 243 ~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
+..+|.+.+ ++||+..+|+..-. +=-|+++||.+|++|+.+-.
T Consensus 177 aay~ISr~v--~iPVlcASGlS~vT-~PmAiaaGAsGVGVGSavn~ 219 (242)
T PF04481_consen 177 AAYAISRAV--SIPVLCASGLSAVT-APMAIAAGASGVGVGSAVNR 219 (242)
T ss_pred HHHHHHhcc--CCceEeccCcchhh-HHHHHHcCCcccchhHHhhh
Confidence 777777776 89999999998544 45689999999999998743
|
As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis. |
| >cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0026 Score=57.58 Aligned_cols=100 Identities=22% Similarity=0.231 Sum_probs=76.8
Q ss_pred HHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccC---CCcEEEecCCCC
Q 019244 189 KDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQG---RIPVFLDGGVRR 265 (344)
Q Consensus 189 ~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~---~~~via~GGIr~ 265 (344)
+.++.+++. ++++-+-.+.|.+++..+.++|+++| +-+-||-.++|...+..+.++.+.... +..|++ .|+|+
T Consensus 92 ~ai~~L~~~-gi~v~~T~V~s~~Qa~~Aa~AGA~yv--sP~vgR~~~~g~dg~~~i~~i~~~~~~~~~~tkil~-As~r~ 167 (211)
T cd00956 92 KAIKKLSEE-GIKTNVTAIFSAAQALLAAKAGATYV--SPFVGRIDDLGGDGMELIREIRTIFDNYGFDTKILA-ASIRN 167 (211)
T ss_pred HHHHHHHHc-CCceeeEEecCHHHHHHHHHcCCCEE--EEecChHhhcCCCHHHHHHHHHHHHHHcCCCceEEe-cccCC
Confidence 456666665 89999999999999999999999995 445566555666666666666655421 344444 56999
Q ss_pred HHHHHHHHHcCCCEEEEchHHHHHhhh
Q 019244 266 GTDVFKALALGASGIFIGRPVVYSLAA 292 (344)
Q Consensus 266 g~dv~kalalGAd~V~ig~~~l~~~~~ 292 (344)
..++..++.+||+.|-+.-.++..+..
T Consensus 168 ~~ei~~a~~~Gad~vTv~~~vl~~l~~ 194 (211)
T cd00956 168 PQHVIEAALAGADAITLPPDVLEQLLK 194 (211)
T ss_pred HHHHHHHHHcCCCEEEeCHHHHHHHhc
Confidence 999999999999999999999887654
|
FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase. |
| >TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0015 Score=60.81 Aligned_cols=85 Identities=24% Similarity=0.356 Sum_probs=59.6
Q ss_pred HHHHhcCCcEEEEee--------cCH---HH-HHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEe
Q 019244 193 WLQTITKLPILVKGV--------LTA---ED-ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD 260 (344)
Q Consensus 193 ~i~~~~~~PvivK~v--------~~~---~~-a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~ 260 (344)
++...+++|+++... .+. .. ++.+.++|+|+|.++.. ..++.+.++.+.. ++||.+.
T Consensus 130 ~~~~~~g~~liv~~~~~Gvh~~~~~~~~~~~~~~~a~~~GADyikt~~~---------~~~~~l~~~~~~~--~iPVva~ 198 (258)
T TIGR01949 130 EICDDWGVPLLAMMYPRGPHIDDRDPELVAHAARLGAELGADIVKTPYT---------GDIDSFRDVVKGC--PAPVVVA 198 (258)
T ss_pred HHHHHcCCCEEEEEeccCcccccccHHHHHHHHHHHHHHCCCEEeccCC---------CCHHHHHHHHHhC--CCcEEEe
Confidence 333446899888432 122 22 46778999999998622 2456677776644 7999999
Q ss_pred cCCC--CHHHH----HHHHHcCCCEEEEchHHHH
Q 019244 261 GGVR--RGTDV----FKALALGASGIFIGRPVVY 288 (344)
Q Consensus 261 GGIr--~g~dv----~kalalGAd~V~ig~~~l~ 288 (344)
|||+ +..++ ..++.+||+.+.+|+.++.
T Consensus 199 GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~ 232 (258)
T TIGR01949 199 GGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQ 232 (258)
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhc
Confidence 9999 54444 4555899999999998875
|
Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally. |
| >PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00092 Score=61.39 Aligned_cols=95 Identities=25% Similarity=0.382 Sum_probs=62.2
Q ss_pred HHHHHHHHh---cCCcEEEEeecCHHH-------------HHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHcc
Q 019244 189 KDVKWLQTI---TKLPILVKGVLTAED-------------ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ 252 (344)
Q Consensus 189 ~~i~~i~~~---~~~PvivK~v~~~~~-------------a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~ 252 (344)
+.++.+++. +++|+|+=..++.++ ++.+.++|+|+|.++..+. ..........+.++.+..
T Consensus 112 ~~i~~v~~~~~~~gl~vIlE~~l~~~~~~~~~~~~~I~~a~ria~e~GaD~vKt~tg~~--~~~t~~~~~~~~~~~~~~- 188 (236)
T PF01791_consen 112 EEIAAVVEECHKYGLKVILEPYLRGEEVADEKKPDLIARAARIAAELGADFVKTSTGKP--VGATPEDVELMRKAVEAA- 188 (236)
T ss_dssp HHHHHHHHHHHTSEEEEEEEECECHHHBSSTTHHHHHHHHHHHHHHTT-SEEEEE-SSS--SCSHHHHHHHHHHHHHTH-
T ss_pred HHHHHHHHHHhcCCcEEEEEEecCchhhcccccHHHHHHHHHHHHHhCCCEEEecCCcc--ccccHHHHHHHHHHHHhc-
Confidence 345555554 468888774444333 4678899999999985411 112233444555554433
Q ss_pred CCCc----EEEecCC------CCHHHHHHHHHcCC--CEEEEchHHH
Q 019244 253 GRIP----VFLDGGV------RRGTDVFKALALGA--SGIFIGRPVV 287 (344)
Q Consensus 253 ~~~~----via~GGI------r~g~dv~kalalGA--d~V~ig~~~l 287 (344)
.+| |.++||| ++..++.+++.+|| ..+..||.++
T Consensus 189 -~~p~~~~Vk~sGGi~~~~~~~~l~~a~~~i~aGa~~~G~~~Gr~i~ 234 (236)
T PF01791_consen 189 -PVPGKVGVKASGGIDAEDFLRTLEDALEFIEAGADRIGTSSGRNIW 234 (236)
T ss_dssp -SSTTTSEEEEESSSSHHHHHHSHHHHHHHHHTTHSEEEEEEHHHHH
T ss_pred -CCCcceEEEEeCCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 455 9999999 99999999999999 6666666553
|
|
| >PRK08745 ribulose-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.018 Score=52.53 Aligned_cols=95 Identities=15% Similarity=0.220 Sum_probs=56.1
Q ss_pred HHHHHHHhcCCcEEEEe--ecCHHHHHHHHHcCCcEEEEcc--CCCCCCCCchhhHHHHHHHHHHcc---CCCcEEEecC
Q 019244 190 DVKWLQTITKLPILVKG--VLTAEDARIAVQAGAAGIIVSN--HGARQLDYVPATIMALEEVVKATQ---GRIPVFLDGG 262 (344)
Q Consensus 190 ~i~~i~~~~~~PvivK~--v~~~~~a~~~~~~G~d~I~v~~--~gG~~~~~g~~~~~~l~~i~~~~~---~~~~via~GG 262 (344)
.++++|+. ++-..+-. -.+.+..+..++ =+|.|.+=+ -|.....+-+.+++-+.++++... .++.|-+|||
T Consensus 102 ~l~~Ir~~-g~k~GlalnP~T~~~~i~~~l~-~vD~VlvMtV~PGf~GQ~fi~~~l~KI~~l~~~~~~~~~~~~IeVDGG 179 (223)
T PRK08745 102 TIQLIKSH-GCQAGLVLNPATPVDILDWVLP-ELDLVLVMSVNPGFGGQAFIPSALDKLRAIRKKIDALGKPIRLEIDGG 179 (223)
T ss_pred HHHHHHHC-CCceeEEeCCCCCHHHHHHHHh-hcCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCeeEEEECC
Confidence 35666664 43332222 133455555544 466665532 121112233455555665555432 2477999999
Q ss_pred CCCHHHHHHHHHcCCCEEEEchHHH
Q 019244 263 VRRGTDVFKALALGASGIFIGRPVV 287 (344)
Q Consensus 263 Ir~g~dv~kalalGAd~V~ig~~~l 287 (344)
|. .+.+.+..+.|||.+.+||.++
T Consensus 180 I~-~eti~~l~~aGaDi~V~GSaiF 203 (223)
T PRK08745 180 VK-ADNIGAIAAAGADTFVAGSAIF 203 (223)
T ss_pred CC-HHHHHHHHHcCCCEEEEChhhh
Confidence 98 6777788899999999999854
|
|
| >PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4 | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.011 Score=55.06 Aligned_cols=50 Identities=24% Similarity=0.395 Sum_probs=39.0
Q ss_pred HHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcC
Q 019244 242 MALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEG 294 (344)
Q Consensus 242 ~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G 294 (344)
+.+..+++.. ++||.+-=||++++|+.+.. .|||+|.+|++++.-+...+
T Consensus 188 ~~i~~ik~~~--~~Pv~vGFGI~~~e~~~~~~-~~aDGvIVGSa~v~~i~~~~ 237 (259)
T PF00290_consen 188 EFIKRIKKHT--DLPVAVGFGISTPEQAKKLA-AGADGVIVGSAFVKIIEENG 237 (259)
T ss_dssp HHHHHHHHTT--SS-EEEESSS-SHHHHHHHH-TTSSEEEESHHHHHHHHHTC
T ss_pred HHHHHHHhhc--CcceEEecCCCCHHHHHHHH-ccCCEEEECHHHHHHHHHcc
Confidence 4566666554 79999988999999998777 99999999999998765434
|
2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: |
| >TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0021 Score=59.58 Aligned_cols=100 Identities=19% Similarity=0.188 Sum_probs=70.1
Q ss_pred cHHHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccC-------------------CCCC-------C---C--
Q 019244 187 SWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNH-------------------GARQ-------L---D-- 235 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~-------------------gG~~-------~---~-- 235 (344)
+.+.|++|.+.+++||.+.+-...++++.+.++||+.+++++. |+-. . +
T Consensus 64 n~~~i~~i~~~~~~~v~vGGGIr~e~v~~~l~aGa~rVvIGS~av~~~~i~~~~~~~i~~~fG~~~IvvsiD~k~~~~g~ 143 (253)
T TIGR02129 64 NDDAAKEALHAYPGGLQVGGGINDTNAQEWLDEGASHVIVTSWLFTKGKFDLKRLKEIVSLVGKDRLIVDLSCRKTQDGR 143 (253)
T ss_pred cHHHHHHHHHhCCCCEEEeCCcCHHHHHHHHHcCCCEEEECcHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEEEEcCCCc
Confidence 6788999999899999988865569999999999999998641 1100 0 0
Q ss_pred -------C----ch------------------------------hhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHH
Q 019244 236 -------Y----VP------------------------------ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 274 (344)
Q Consensus 236 -------~----g~------------------------------~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kala 274 (344)
| +. +.++.+.++.+.. ++|||++||++|.+|+.++-.
T Consensus 144 ~~V~~~GW~~~t~~~~~~e~~~~~~~~~~~il~TdI~rDGtl~G~dlel~~~l~~~~--~ipVIASGGv~s~eDi~~l~~ 221 (253)
T TIGR02129 144 WIVAMNKWQTITDLELNAETLEELSKYCDEFLIHAADVEGLCKGIDEELVSKLGEWS--PIPITYAGGAKSIDDLDLVDE 221 (253)
T ss_pred EEEEECCCcccCCCChHHHHHHHHHhhCCEEEEeeecccCccccCCHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHH
Confidence 1 11 1223333333333 799999999999999998855
Q ss_pred c--CCCEEEEchHHHH
Q 019244 275 L--GASGIFIGRPVVY 288 (344)
Q Consensus 275 l--GAd~V~ig~~~l~ 288 (344)
+ |...+.+|++++.
T Consensus 222 ~~~g~~~aIvG~Alf~ 237 (253)
T TIGR02129 222 LSKGKVDLTIGSALDI 237 (253)
T ss_pred hcCCCCcEEeeehHHH
Confidence 5 5555778887653
|
This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut. |
| >TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0058 Score=55.40 Aligned_cols=113 Identities=26% Similarity=0.210 Sum_probs=81.7
Q ss_pred HHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHc---cCCCcEEEecCCCC
Q 019244 189 KDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRR 265 (344)
Q Consensus 189 ~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~---~~~~~via~GGIr~ 265 (344)
+.++.+++. ++++-+=.+.|.+++..+.++|+++|-. .-||-.++|.+.+..+.++.+.. +.+..|++. .+|+
T Consensus 92 ~A~~~L~~~-Gi~v~~T~vfs~~Qa~~Aa~aGa~yisp--yvgRi~d~g~dg~~~v~~~~~~~~~~~~~tkIlaA-S~r~ 167 (213)
T TIGR00875 92 KAVKILKKE-GIKTNVTLVFSAAQALLAAKAGATYVSP--FVGRLDDIGGDGMKLIEEVKTIFENHAPDTEVIAA-SVRH 167 (213)
T ss_pred HHHHHHHHC-CCceeEEEecCHHHHHHHHHcCCCEEEe--ecchHHHcCCCHHHHHHHHHHHHHHcCCCCEEEEe-ccCC
Confidence 345555543 8999888899999999999999998865 44565555556666666665544 336776665 4999
Q ss_pred HHHHHHHHHcCCCEEEEchHHHHHhhhcC--hHHHHHHHHHH
Q 019244 266 GTDVFKALALGASGIFIGRPVVYSLAAEG--EKGVRRVLEML 305 (344)
Q Consensus 266 g~dv~kalalGAd~V~ig~~~l~~~~~~G--~~~v~~~l~~l 305 (344)
..++.++..+|+|.|-+.-.++..+..+. ..+++.+-+.|
T Consensus 168 ~~~v~~~~~~G~d~vTip~~vl~~l~~~p~t~~~~~~F~~d~ 209 (213)
T TIGR00875 168 PRHVLEAALIGADIATMPLDVMQQLFNHPLTDIGLERFLKDW 209 (213)
T ss_pred HHHHHHHHHcCCCEEEcCHHHHHHHHcCCchHHHHHHHHHHH
Confidence 99999999999999999999988765322 23454444443
|
This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth. |
| >PRK04302 triosephosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0037 Score=56.99 Aligned_cols=96 Identities=27% Similarity=0.343 Sum_probs=63.2
Q ss_pred HHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccC--CCC--CCCC-chhhHH-HHHHHHHHccCCCcEEEecCCC
Q 019244 191 VKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNH--GAR--QLDY-VPATIM-ALEEVVKATQGRIPVFLDGGVR 264 (344)
Q Consensus 191 i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~--gG~--~~~~-g~~~~~-~l~~i~~~~~~~~~via~GGIr 264 (344)
++..++ .++.+++ .+.+.++++.+.+.|.++|.+-.. -|+ ..+. .+..+. .+..+++. ..++||++.|||+
T Consensus 107 v~~a~~-~Gl~~I~-~v~~~~~~~~~~~~~~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~-~~~~pvi~GggI~ 183 (223)
T PRK04302 107 VERAKK-LGLESVV-CVNNPETSAAAAALGPDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKV-NPDVKVLCGAGIS 183 (223)
T ss_pred HHHHHH-CCCeEEE-EcCCHHHHHHHhcCCCCEEEEeCccccccCCCCCcCCHHHHHHHHHHHHhc-cCCCEEEEECCCC
Confidence 333333 3655553 456778888899999998876432 122 1111 122222 22333332 2368999999999
Q ss_pred CHHHHHHHHHcCCCEEEEchHHHHH
Q 019244 265 RGTDVFKALALGASGIFIGRPVVYS 289 (344)
Q Consensus 265 ~g~dv~kalalGAd~V~ig~~~l~~ 289 (344)
+.+++..++..|||+|.+|+.++..
T Consensus 184 ~~e~~~~~~~~gadGvlVGsa~l~~ 208 (223)
T PRK04302 184 TGEDVKAALELGADGVLLASGVVKA 208 (223)
T ss_pred CHHHHHHHHcCCCCEEEEehHHhCC
Confidence 9999999999999999999999863
|
|
| >cd00945 Aldolase_Class_I Class I aldolases | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.002 Score=56.54 Aligned_cols=92 Identities=28% Similarity=0.282 Sum_probs=67.4
Q ss_pred HHHHHHHHHh--cCCcEEEEeec----CHHHHH----HHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcE
Q 019244 188 WKDVKWLQTI--TKLPILVKGVL----TAEDAR----IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 257 (344)
Q Consensus 188 ~~~i~~i~~~--~~~PvivK~v~----~~~~a~----~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~v 257 (344)
.+.++.+++. .++|++++... +++... .+.+.|+++|+.+.... .+...+..+.++.+..+.++++
T Consensus 100 ~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g~~~iK~~~~~~----~~~~~~~~~~~i~~~~~~~~~v 175 (201)
T cd00945 100 LEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAEAGADFIKTSTGFG----GGGATVEDVKLMKEAVGGRVGV 175 (201)
T ss_pred HHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEeCCCCC----CCCCCHHHHHHHHHhcccCCcE
Confidence 4567788887 48999999862 454433 35689999999875211 1123455666666665446899
Q ss_pred EEecCCCCHHHHHHHHHcCCCEEEEc
Q 019244 258 FLDGGVRRGTDVFKALALGASGIFIG 283 (344)
Q Consensus 258 ia~GGIr~g~dv~kalalGAd~V~ig 283 (344)
++.||+.+..++..++.+||+.+.+|
T Consensus 176 ~~~gg~~~~~~~~~~~~~Ga~g~~~g 201 (201)
T cd00945 176 KAAGGIKTLEDALAAIEAGADGIGTS 201 (201)
T ss_pred EEECCCCCHHHHHHHHHhccceeecC
Confidence 99999999999999999999999865
|
The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin. |
| >PRK06096 molybdenum transport protein ModD; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0072 Score=57.07 Aligned_cols=85 Identities=15% Similarity=0.175 Sum_probs=64.3
Q ss_pred HHHHHHHHhcC-CcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHc---cCCCcEEEecCCC
Q 019244 189 KDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVR 264 (344)
Q Consensus 189 ~~i~~i~~~~~-~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~---~~~~~via~GGIr 264 (344)
+.++.+|+..+ .+ |.=++.+.++++.+.++|+|.|.++|. .+.. +.++.+.+ ..++.+-++|||.
T Consensus 178 ~av~~~r~~~~~~k-IeVEv~tleqa~ea~~agaDiI~LDn~-------~~e~---l~~av~~~~~~~~~~~leaSGGI~ 246 (284)
T PRK06096 178 GAINQLRRHAPEKK-IVVEADTPKEAIAALRAQPDVLQLDKF-------SPQQ---ATEIAQIAPSLAPHCTLSLAGGIN 246 (284)
T ss_pred HHHHHHHHhCCCCC-EEEECCCHHHHHHHHHcCCCEEEECCC-------CHHH---HHHHHHHhhccCCCeEEEEECCCC
Confidence 45888888764 34 444678999999999999999999763 2333 33333333 3578899999997
Q ss_pred CHHHHHHHHHcCCCEEEEchH
Q 019244 265 RGTDVFKALALGASGIFIGRP 285 (344)
Q Consensus 265 ~g~dv~kalalGAd~V~ig~~ 285 (344)
.+.+.++-.+|+|.+.+|.+
T Consensus 247 -~~ni~~yA~tGvD~Is~gal 266 (284)
T PRK06096 247 -LNTLKNYADCGIRLFITSAP 266 (284)
T ss_pred -HHHHHHHHhcCCCEEEECcc
Confidence 88888888899999988876
|
|
| >PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2 | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0032 Score=55.00 Aligned_cols=92 Identities=21% Similarity=0.222 Sum_probs=65.5
Q ss_pred HHHHHHHHhcC-CcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHH
Q 019244 189 KDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 267 (344)
Q Consensus 189 ~~i~~i~~~~~-~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~ 267 (344)
+.++.+++..+ .+-|.=++.+.++++.++++|+|.|.++|. .+..+..+.+..+....++.|.++|||. ..
T Consensus 68 ~av~~~~~~~~~~~~I~VEv~~~ee~~ea~~~g~d~I~lD~~-------~~~~~~~~v~~l~~~~~~v~ie~SGGI~-~~ 139 (169)
T PF01729_consen 68 EAVKAARQAAPEKKKIEVEVENLEEAEEALEAGADIIMLDNM-------SPEDLKEAVEELRELNPRVKIEASGGIT-LE 139 (169)
T ss_dssp HHHHHHHHHSTTTSEEEEEESSHHHHHHHHHTT-SEEEEES--------CHHHHHHHHHHHHHHTTTSEEEEESSSS-TT
T ss_pred HHHHHHHHhCCCCceEEEEcCCHHHHHHHHHhCCCEEEecCc-------CHHHHHHHHHHHhhcCCcEEEEEECCCC-HH
Confidence 35788888764 332444678999999999999999999874 2333332222223445579999999997 78
Q ss_pred HHHHHHHcCCCEEEEchHHHH
Q 019244 268 DVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 268 dv~kalalGAd~V~ig~~~l~ 288 (344)
.+.++...|+|.+.+|+....
T Consensus 140 ni~~ya~~gvD~isvg~~~~~ 160 (169)
T PF01729_consen 140 NIAEYAKTGVDVISVGSLTHS 160 (169)
T ss_dssp THHHHHHTT-SEEEECHHHHS
T ss_pred HHHHHHhcCCCEEEcChhhcC
Confidence 899999999999999987653
|
4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D .... |
| >PRK09016 quinolinate phosphoribosyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0076 Score=57.10 Aligned_cols=87 Identities=24% Similarity=0.250 Sum_probs=67.7
Q ss_pred HHHHHHHHhcC-CcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHH
Q 019244 189 KDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 267 (344)
Q Consensus 189 ~~i~~i~~~~~-~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~ 267 (344)
+.++.+++..+ .|+ .=++-|.++++.+.++|+|.|-++|. +.+.+.++.+..++++.+.++|||. ..
T Consensus 197 ~av~~~r~~~~~~kI-eVEv~sleea~ea~~~gaDiI~LDn~----------s~e~~~~av~~~~~~~~ieaSGGI~-~~ 264 (296)
T PRK09016 197 QAVEKAFWLHPDVPV-EVEVENLDELDQALKAGADIIMLDNF----------TTEQMREAVKRTNGRALLEVSGNVT-LE 264 (296)
T ss_pred HHHHHHHHhCCCCCE-EEEeCCHHHHHHHHHcCCCEEEeCCC----------ChHHHHHHHHhhcCCeEEEEECCCC-HH
Confidence 45777777653 554 44678999999999999999999873 2355555555555688999999997 78
Q ss_pred HHHHHHHcCCCEEEEchHHH
Q 019244 268 DVFKALALGASGIFIGRPVV 287 (344)
Q Consensus 268 dv~kalalGAd~V~ig~~~l 287 (344)
.+.++-.+|+|.+.+|.+..
T Consensus 265 ni~~yA~tGVD~Is~galth 284 (296)
T PRK09016 265 TLREFAETGVDFISVGALTK 284 (296)
T ss_pred HHHHHHhcCCCEEEeCcccc
Confidence 88888889999999998653
|
|
| >TIGR01182 eda Entner-Doudoroff aldolase | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0016 Score=58.65 Aligned_cols=81 Identities=27% Similarity=0.322 Sum_probs=61.1
Q ss_pred cHHHHHHHHHhc-CCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCC
Q 019244 187 SWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 265 (344)
Q Consensus 187 ~~~~i~~i~~~~-~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~ 265 (344)
..+.|+++++.+ ++.|.+..|++.++++.+.++|+++|+ |-+ .+.+.+..+.+ .++|.+- |+.|
T Consensus 46 a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~Fiv-sP~---------~~~~v~~~~~~---~~i~~iP--G~~T 110 (204)
T TIGR01182 46 ALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFIV-SPG---------LTPELAKHAQD---HGIPIIP--GVAT 110 (204)
T ss_pred HHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEE-CCC---------CCHHHHHHHHH---cCCcEEC--CCCC
Confidence 346799999887 477888888999999999999999994 321 12233333322 2577766 9999
Q ss_pred HHHHHHHHHcCCCEEEE
Q 019244 266 GTDVFKALALGASGIFI 282 (344)
Q Consensus 266 g~dv~kalalGAd~V~i 282 (344)
+.++.+|+.+||+.|=+
T Consensus 111 ptEi~~A~~~Ga~~vKl 127 (204)
T TIGR01182 111 PSEIMLALELGITALKL 127 (204)
T ss_pred HHHHHHHHHCCCCEEEE
Confidence 99999999999999744
|
2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida |
| >PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.009 Score=56.54 Aligned_cols=86 Identities=24% Similarity=0.303 Sum_probs=65.4
Q ss_pred HHHHHHHhcC-CcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHH
Q 019244 190 DVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 268 (344)
Q Consensus 190 ~i~~i~~~~~-~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~d 268 (344)
.++.+++... .+|. =++-|.++++.+.++|+|.|-++|. +.+.+.++.+.+++++.+-+||||. ...
T Consensus 195 av~~~r~~~~~~kIe-VEvetleea~eA~~aGaDiImLDnm----------spe~l~~av~~~~~~~~lEaSGGIt-~~n 262 (294)
T PRK06978 195 ALDAAFALNAGVPVQ-IEVETLAQLETALAHGAQSVLLDNF----------TLDMMREAVRVTAGRAVLEVSGGVN-FDT 262 (294)
T ss_pred HHHHHHHhCCCCcEE-EEcCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHhhcCCeEEEEECCCC-HHH
Confidence 4666666442 3433 3568999999999999999999874 2344555555555678899999997 788
Q ss_pred HHHHHHcCCCEEEEchHHH
Q 019244 269 VFKALALGASGIFIGRPVV 287 (344)
Q Consensus 269 v~kalalGAd~V~ig~~~l 287 (344)
+.++-..|+|.+.+|.+..
T Consensus 263 i~~yA~tGVD~IS~galth 281 (294)
T PRK06978 263 VRAFAETGVDRISIGALTK 281 (294)
T ss_pred HHHHHhcCCCEEEeCcccc
Confidence 8888889999999998654
|
|
| >TIGR01334 modD putative molybdenum utilization protein ModD | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0092 Score=56.17 Aligned_cols=86 Identities=15% Similarity=0.162 Sum_probs=64.2
Q ss_pred HHHHHHHHhcC-CcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHc---cCCCcEEEecCCC
Q 019244 189 KDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVR 264 (344)
Q Consensus 189 ~~i~~i~~~~~-~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~---~~~~~via~GGIr 264 (344)
+.++.+|+..+ .+|. =++.+.++++.+.++|+|.|.++|. .+.. +.++.+.+ ..++.|.++|||.
T Consensus 177 ~av~~~r~~~~~~kIe-VEv~tleea~ea~~~GaDiI~lDn~-------~~e~---l~~~v~~l~~~~~~~~leasGGI~ 245 (277)
T TIGR01334 177 GAIGRLKQTAPERKIT-VEADTIEQALTVLQASPDILQLDKF-------TPQQ---LHHLHERLKFFDHIPTLAAAGGIN 245 (277)
T ss_pred HHHHHHHHhCCCCCEE-EECCCHHHHHHHHHcCcCEEEECCC-------CHHH---HHHHHHHHhccCCCEEEEEECCCC
Confidence 45888887653 4433 3568999999999999999999763 1223 33333333 3578899999997
Q ss_pred CHHHHHHHHHcCCCEEEEchHH
Q 019244 265 RGTDVFKALALGASGIFIGRPV 286 (344)
Q Consensus 265 ~g~dv~kalalGAd~V~ig~~~ 286 (344)
...+.++..+|+|.+.+|.++
T Consensus 246 -~~ni~~ya~~GvD~is~gal~ 266 (277)
T TIGR01334 246 -PENIADYIEAGIDLFITSAPY 266 (277)
T ss_pred -HHHHHHHHhcCCCEEEeCcce
Confidence 889999999999999999863
|
The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown. |
| >PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0012 Score=60.57 Aligned_cols=73 Identities=19% Similarity=0.301 Sum_probs=54.7
Q ss_pred HHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHH
Q 019244 211 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 287 (344)
Q Consensus 211 ~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l 287 (344)
+.++...+. ++.+.+-.--|. ..+.++..+.+.++.+.. .+||+++|||||-+|+.+++.+||+.|.+|+..+
T Consensus 34 ~~a~~~~~~-~~~l~ivDldga-~~g~~~n~~~i~~i~~~~--~~pv~~gGGIrs~edv~~l~~~G~~~vivGtaa~ 106 (228)
T PRK04128 34 EIALRFSEY-VDKIHVVDLDGA-FEGKPKNLDVVKNIIRET--GLKVQVGGGLRTYESIKDAYEIGVENVIIGTKAF 106 (228)
T ss_pred HHHHHHHHh-CCEEEEEECcch-hcCCcchHHHHHHHHhhC--CCCEEEcCCCCCHHHHHHHHHCCCCEEEECchhc
Confidence 445666666 887766432121 112245778888887765 7999999999999999999999999999999865
|
|
| >COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.03 Score=50.67 Aligned_cols=66 Identities=20% Similarity=0.321 Sum_probs=43.8
Q ss_pred chhhHHHHHHHHHHccC--CCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcChHHHHHHHHHHHHHH
Q 019244 237 VPATIMALEEVVKATQG--RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEF 309 (344)
Q Consensus 237 g~~~~~~l~~i~~~~~~--~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~el 309 (344)
-+..++-++++++.... ++-|-+||||. .+.+-++.++|||.+..||.++. + ......++.++.++
T Consensus 150 i~~~l~Ki~~lr~~~~~~~~~~IeVDGGI~-~~t~~~~~~AGad~~VaGSalF~-----~-~d~~~~i~~~~~~~ 217 (220)
T COG0036 150 IPEVLEKIRELRAMIDERLDILIEVDGGIN-LETIKQLAAAGADVFVAGSALFG-----A-DDYKATIRELRGEL 217 (220)
T ss_pred CHHHHHHHHHHHHHhcccCCeEEEEeCCcC-HHHHHHHHHcCCCEEEEEEEEeC-----C-ccHHHHHHHHHHHh
Confidence 45566777777766542 56788999998 56666677799999999995442 1 22344555555444
|
|
| >TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0035 Score=57.17 Aligned_cols=76 Identities=30% Similarity=0.433 Sum_probs=59.6
Q ss_pred HHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 210 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
.+.|+...+.|++.+.+-.-.+. ........+.+.++++.. .+|+.+.|||++.+|+.+++.+||+.|.+|+..+.
T Consensus 31 ~~~a~~~~~~g~~~l~v~dl~~~-~~g~~~~~~~i~~i~~~~--~~pi~~ggGI~~~ed~~~~~~~Ga~~vvlgs~~l~ 106 (230)
T TIGR00007 31 VEAAKKWEEEGAERIHVVDLDGA-KEGGPVNLPVIKKIVRET--GVPVQVGGGIRSLEDVEKLLDLGVDRVIIGTAAVE 106 (230)
T ss_pred HHHHHHHHHcCCCEEEEEeCCcc-ccCCCCcHHHHHHHHHhc--CCCEEEeCCcCCHHHHHHHHHcCCCEEEEChHHhh
Confidence 35678888999999988643221 112234667788887766 69999999999999999999999999999987764
|
Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317). |
| >TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0018 Score=59.15 Aligned_cols=76 Identities=25% Similarity=0.305 Sum_probs=59.2
Q ss_pred HHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 210 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
.+.++...+.|++.+.+..-.+- ........+.+.++++.. ++||+++|||++.+|+.+++.+||+.|.+|+..+.
T Consensus 33 ~~~a~~~~~~g~~~i~i~dl~~~-~~~~~~n~~~~~~i~~~~--~~pv~~~ggi~~~~d~~~~~~~G~~~vilg~~~l~ 108 (232)
T TIGR03572 33 VNAARIYNAKGADELIVLDIDAS-KRGREPLFELISNLAEEC--FMPLTVGGGIRSLEDAKKLLSLGADKVSINTAALE 108 (232)
T ss_pred HHHHHHHHHcCCCEEEEEeCCCc-ccCCCCCHHHHHHHHHhC--CCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHhc
Confidence 35578888999998877543221 112245677788888766 69999999999999999999999999999998764
|
This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr |
| >PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0015 Score=60.06 Aligned_cols=75 Identities=28% Similarity=0.443 Sum_probs=58.7
Q ss_pred HHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHH
Q 019244 210 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 287 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l 287 (344)
.+.++.+.+.|++.+.+-...+. ..........+.++.+.. .+|+++.|||++.+|+.+++.+||+.|.+|+..+
T Consensus 35 ~e~a~~~~~~G~~~l~i~dl~~~-~~~~~~~~~~i~~i~~~~--~~~l~v~GGi~~~~~~~~~~~~Ga~~v~iGs~~~ 109 (241)
T PRK13585 35 VEVAKRWVDAGAETLHLVDLDGA-FEGERKNAEAIEKIIEAV--GVPVQLGGGIRSAEDAASLLDLGVDRVILGTAAV 109 (241)
T ss_pred HHHHHHHHHcCCCEEEEEechhh-hcCCcccHHHHHHHHHHc--CCcEEEcCCcCCHHHHHHHHHcCCCEEEEChHHh
Confidence 36688899999999988543211 112234566777777765 6999999999999999999999999999999775
|
|
| >PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.013 Score=55.44 Aligned_cols=87 Identities=15% Similarity=0.143 Sum_probs=65.7
Q ss_pred HHHHHHHHhcC-CcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHH---ccCCCcEEEecCCC
Q 019244 189 KDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKA---TQGRIPVFLDGGVR 264 (344)
Q Consensus 189 ~~i~~i~~~~~-~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~---~~~~~~via~GGIr 264 (344)
+.++++++..+ .|+. =++.|.+++..+.++|+|.|-++|. .+ +.+.++.+. .++++.+.+||||.
T Consensus 188 ~ai~~~r~~~~~~kIe-VEv~tl~ea~eal~~gaDiI~LDnm-------~~---e~vk~av~~~~~~~~~v~ieaSGGI~ 256 (289)
T PRK07896 188 AALRAVRAAAPDLPCE-VEVDSLEQLDEVLAEGAELVLLDNF-------PV---WQTQEAVQRRDARAPTVLLESSGGLT 256 (289)
T ss_pred HHHHHHHHhCCCCCEE-EEcCCHHHHHHHHHcCCCEEEeCCC-------CH---HHHHHHHHHHhccCCCEEEEEECCCC
Confidence 45788887653 5544 3678999999999999999999873 13 333333322 34578999999997
Q ss_pred CHHHHHHHHHcCCCEEEEchHHH
Q 019244 265 RGTDVFKALALGASGIFIGRPVV 287 (344)
Q Consensus 265 ~g~dv~kalalGAd~V~ig~~~l 287 (344)
.+.+.++-.+|+|.+.+|.+..
T Consensus 257 -~~ni~~yA~tGvD~Is~galt~ 278 (289)
T PRK07896 257 -LDTAAAYAETGVDYLAVGALTH 278 (289)
T ss_pred -HHHHHHHHhcCCCEEEeChhhc
Confidence 7888888889999999998764
|
|
| >PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2 | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0036 Score=55.04 Aligned_cols=77 Identities=23% Similarity=0.329 Sum_probs=55.8
Q ss_pred ecCHHHHHHHHHcCCcEEEEccCCCCC--CCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEch
Q 019244 207 VLTAEDARIAVQAGAAGIIVSNHGARQ--LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 284 (344)
Q Consensus 207 v~~~~~a~~~~~~G~d~I~v~~~gG~~--~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~ 284 (344)
+-+.++++.+.+.|+|++.++---.+. .+..+..++.+.++.+.. ++||++-||| +..++.++..+||+.|.+-+
T Consensus 102 ~h~~~e~~~a~~~g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~~--~~pv~AlGGI-~~~~i~~l~~~Ga~gvAvi~ 178 (180)
T PF02581_consen 102 CHSLEEAREAEELGADYVFLGPVFPTSSKPGAPPLGLDGLREIARAS--PIPVYALGGI-TPENIPELREAGADGVAVIS 178 (180)
T ss_dssp ESSHHHHHHHHHCTTSEEEEETSS--SSSSS-TTCHHHHHHHHHHHT--SSCEEEESS---TTTHHHHHHTT-SEEEESH
T ss_pred cCcHHHHHHhhhcCCCEEEECCccCCCCCccccccCHHHHHHHHHhC--CCCEEEEcCC-CHHHHHHHHHcCCCEEEEEe
Confidence 467899999999999999997532221 111233466777777766 6999999999 68999999999999999877
Q ss_pred HH
Q 019244 285 PV 286 (344)
Q Consensus 285 ~~ 286 (344)
.+
T Consensus 179 aI 180 (180)
T PF02581_consen 179 AI 180 (180)
T ss_dssp HH
T ss_pred eC
Confidence 53
|
5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D .... |
| >COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0014 Score=59.29 Aligned_cols=101 Identities=33% Similarity=0.444 Sum_probs=72.0
Q ss_pred cHHHHHHHHHhcCCcEEEEee-cCHHHHHHHHHcCCcEEEEcc---------C------------CCCCC----------
Q 019244 187 SWKDVKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSN---------H------------GARQL---------- 234 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v-~~~~~a~~~~~~G~d~I~v~~---------~------------gG~~~---------- 234 (344)
+.+.|++|.+...+||..|-. -+.-+|+.+...|+|+|+=|- | |-|.+
T Consensus 65 Dp~~i~eim~aVsIPVMAKvRIGH~~EA~iLealgVD~IDESEVLTPAD~~~Hi~K~~FtVPFVcGarnLgEAlRRI~EG 144 (296)
T COG0214 65 DPKMIEEIMDAVSIPVMAKVRIGHFVEAQILEALGVDMIDESEVLTPADEEFHINKWKFTVPFVCGARNLGEALRRISEG 144 (296)
T ss_pred CHHHHHHHHHhcccceeeeeecchhHHHHHHHHhCCCccccccccCCCchhhhcchhhcccceecCcCcHHHHHHHHhhh
Confidence 346799999999999999975 577889999999999998651 1 11110
Q ss_pred --------C--Cc----------------------------------hhhHHHHHHHHHHccCCCcE--EEecCCCCHHH
Q 019244 235 --------D--YV----------------------------------PATIMALEEVVKATQGRIPV--FLDGGVRRGTD 268 (344)
Q Consensus 235 --------~--~g----------------------------------~~~~~~l~~i~~~~~~~~~v--ia~GGIr~g~d 268 (344)
. .| ..+.+.+.++.+. +++|| ++.|||.|+.|
T Consensus 145 AaMIRTKGEaGTGnv~eAVrHmr~i~~eI~~l~~~~edel~~~Ak~~~~p~elv~~~~~~--grLPVvnFAAGGvATPAD 222 (296)
T COG0214 145 AAMIRTKGEAGTGNVVEAVRHMRKINGEIRRLQSMTEDELYVVAKELQAPYELVKEVAKL--GRLPVVNFAAGGVATPAD 222 (296)
T ss_pred HHHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHhCChHHHHHHHHHh--CCCCeEeecccCcCChhH
Confidence 0 00 0122333333332 36665 67999999999
Q ss_pred HHHHHHcCCCEEEEchHHHHH
Q 019244 269 VFKALALGASGIFIGRPVVYS 289 (344)
Q Consensus 269 v~kalalGAd~V~ig~~~l~~ 289 (344)
++-.+.||||.|++|+.++.+
T Consensus 223 AALMM~LGadGVFVGSGIFKS 243 (296)
T COG0214 223 AALMMQLGADGVFVGSGIFKS 243 (296)
T ss_pred HHHHHHhCCCeEEecccccCC
Confidence 999999999999999988763
|
|
| >cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP) | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0022 Score=57.44 Aligned_cols=97 Identities=21% Similarity=0.184 Sum_probs=65.7
Q ss_pred cHHHHHHHHHhcCCcEEEEee-cCHHH--HHHHHHcCCcEEEEccCCCCCC--CCchhhHHHHHHHHHHccCCCcEEEec
Q 019244 187 SWKDVKWLQTITKLPILVKGV-LTAED--ARIAVQAGAAGIIVSNHGARQL--DYVPATIMALEEVVKATQGRIPVFLDG 261 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v-~~~~~--a~~~~~~G~d~I~v~~~gG~~~--~~g~~~~~~l~~i~~~~~~~~~via~G 261 (344)
+.+.++.+++..+.+++.... .+..+ ...+...|+|++.+.+..+... .+-+..++.+.++. .++|+++.|
T Consensus 84 ~~~~~~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~aD~il~dt~~~~~~Gg~g~~~~~~~l~~~~----~~~PvilaG 159 (203)
T cd00405 84 SPEYCAQLRARLGLPVIKAIRVKDEEDLEKAAAYAGEVDAILLDSKSGGGGGGTGKTFDWSLLRGLA----SRKPVILAG 159 (203)
T ss_pred CHHHHHHHHhhcCCcEEEEEecCChhhHHHhhhccccCCEEEEcCCCCCCCCCCcceEChHHhhccc----cCCCEEEEC
Confidence 345788888877777763222 23222 3355668999998876321100 11133556666553 368999999
Q ss_pred CCCCHHHHHHHHHcC-CCEEEEchHHHH
Q 019244 262 GVRRGTDVFKALALG-ASGIFIGRPVVY 288 (344)
Q Consensus 262 GIr~g~dv~kalalG-Ad~V~ig~~~l~ 288 (344)
|| +++++.++++.| +++|-+.+.+..
T Consensus 160 GI-~~~Nv~~~i~~~~~~gvdv~S~ie~ 186 (203)
T cd00405 160 GL-TPDNVAEAIRLVRPYGVDVSSGVET 186 (203)
T ss_pred CC-ChHHHHHHHHhcCCCEEEcCCcccC
Confidence 99 899999999999 999999998764
|
Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes. |
| >TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0012 Score=61.16 Aligned_cols=69 Identities=22% Similarity=0.175 Sum_probs=59.0
Q ss_pred HHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 210 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
.+.|+.-.+.|++.+.+-.- |.+..+.+.++.+.. .+||...||||+ +++.+++.+||+.|.+|+.++.
T Consensus 41 ~~~A~~~~~~Ga~~lHvVDL-------g~~n~~~i~~i~~~~--~~~v~vGGGIr~-e~v~~~l~aGa~rVvIGS~av~ 109 (253)
T TIGR02129 41 SYYAKLYKDDGVKGCHVIML-------GPNNDDAAKEALHAY--PGGLQVGGGIND-TNAQEWLDEGASHVIVTSWLFT 109 (253)
T ss_pred HHHHHHHHHcCCCEEEEEEC-------CCCcHHHHHHHHHhC--CCCEEEeCCcCH-HHHHHHHHcCCCEEEECcHHHh
Confidence 57899999999999987433 344778888888876 699999999998 9999999999999999997764
|
This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut. |
| >PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0019 Score=59.38 Aligned_cols=77 Identities=14% Similarity=0.154 Sum_probs=59.3
Q ss_pred CH-HHHHHHHH-cCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHH
Q 019244 209 TA-EDARIAVQ-AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 286 (344)
Q Consensus 209 ~~-~~a~~~~~-~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~ 286 (344)
++ +.|+...+ .|+|.+.+..--+. ....+...+.+.++.+.+ .+||.+.|||||-+|+.+++.+||+-|.+|+..
T Consensus 32 dp~~~a~~~~~~~Ga~~l~ivDLd~a-~~~~~~n~~~I~~i~~~~--~~pi~vGGGIrs~e~v~~~l~~Ga~kvvigt~a 108 (234)
T PRK13587 32 SAEESIAYYSQFECVNRIHIVDLIGA-KAQHAREFDYIKSLRRLT--TKDIEVGGGIRTKSQIMDYFAAGINYCIVGTKG 108 (234)
T ss_pred CHHHHHHHHHhccCCCEEEEEECccc-ccCCcchHHHHHHHHhhc--CCeEEEcCCcCCHHHHHHHHHCCCCEEEECchH
Confidence 44 56777777 69999987542221 112345678888888765 699999999999999999999999999999976
Q ss_pred HH
Q 019244 287 VY 288 (344)
Q Consensus 287 l~ 288 (344)
+.
T Consensus 109 ~~ 110 (234)
T PRK13587 109 IQ 110 (234)
T ss_pred hc
Confidence 53
|
|
| >PRK12656 fructose-6-phosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.016 Score=52.74 Aligned_cols=114 Identities=19% Similarity=0.177 Sum_probs=79.5
Q ss_pred HHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHc---cCCCcEEEecCCCC
Q 019244 189 KDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRR 265 (344)
Q Consensus 189 ~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~---~~~~~via~GGIr~ 265 (344)
+.++.+.+. ++++-+=.+.|++++..+.++|+++|-. .-||-.|.|......+.++++.. ..+..|++.+ +|+
T Consensus 96 ~Ai~~L~~~-Gi~vn~T~ifs~~Qa~~Aa~aGa~yvsP--yvgRi~d~g~D~~~~i~~i~~~~~~~~~~tkILaAS-~r~ 171 (222)
T PRK12656 96 AAIKTLKAE-GYHITATAIYTVFQGLLAIEAGADYLAP--YYNRMENLNIDSNAVIGQLAEAIDRENSDSKILAAS-FKN 171 (222)
T ss_pred HHHHHHHHC-CCceEEeeeCCHHHHHHHHHCCCCEEec--ccchhhhcCCCHHHHHHHHHHHHHhcCCCCEEEEEe-cCC
Confidence 345555544 8999888899999999999999988754 44564444444445555544433 3356677755 999
Q ss_pred HHHHHHHHHcCCCEEEEchHHHHHhhhcC--hHHHHHHHHHHH
Q 019244 266 GTDVFKALALGASGIFIGRPVVYSLAAEG--EKGVRRVLEMLR 306 (344)
Q Consensus 266 g~dv~kalalGAd~V~ig~~~l~~~~~~G--~~~v~~~l~~l~ 306 (344)
..++.++..+||+.+-+.-.++..+..+. ..+++.+.+.|.
T Consensus 172 ~~~v~~a~~~G~d~vTvp~~vl~~l~~~p~t~~~~~~F~~dw~ 214 (222)
T PRK12656 172 VAQVNKAFALGAQAVTAGPDVFEAAFAMPSIQKAVDDFADDWE 214 (222)
T ss_pred HHHHHHHHHcCCCEEecCHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 99999999999999999998887764221 244555544443
|
|
| >COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0027 Score=57.48 Aligned_cols=76 Identities=25% Similarity=0.285 Sum_probs=59.6
Q ss_pred HHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 210 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
.+.|+.-.+.|+|-++.-.--.+ .+.-.+.++.+.++++.+ -+|+..-|||++.+|+-+.|.+|||=|-|.++.+.
T Consensus 33 VelA~~Y~e~GADElvFlDItAs-~~gr~~~~~vv~r~A~~v--fiPltVGGGI~s~eD~~~ll~aGADKVSINsaAv~ 108 (256)
T COG0107 33 VELAKRYNEEGADELVFLDITAS-SEGRETMLDVVERVAEQV--FIPLTVGGGIRSVEDARKLLRAGADKVSINSAAVK 108 (256)
T ss_pred HHHHHHHHHcCCCeEEEEecccc-cccchhHHHHHHHHHhhc--eeeeEecCCcCCHHHHHHHHHcCCCeeeeChhHhc
Confidence 47789999999998876321000 011134567888888776 79999999999999999999999999999998765
|
|
| >PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.006 Score=57.48 Aligned_cols=87 Identities=20% Similarity=0.167 Sum_probs=69.3
Q ss_pred HHHHHHHHhcC--CcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCH
Q 019244 189 KDVKWLQTITK--LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 266 (344)
Q Consensus 189 ~~i~~i~~~~~--~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g 266 (344)
+.++.+|+..+ .+|. =++.|.+++..+.++|+|.|-++|. +.+.+.++.+.++++.++-+||||. .
T Consensus 182 ~ai~~~r~~~~~~~kIe-VEv~tleea~ea~~~gaDiI~LDn~----------s~e~l~~av~~~~~~~~leaSGGI~-~ 249 (281)
T PRK06106 182 EAIRRARAGVGHLVKIE-VEVDTLDQLEEALELGVDAVLLDNM----------TPDTLREAVAIVAGRAITEASGRIT-P 249 (281)
T ss_pred HHHHHHHHhCCCCCcEE-EEeCCHHHHHHHHHcCCCEEEeCCC----------CHHHHHHHHHHhCCCceEEEECCCC-H
Confidence 46888888764 4444 3678999999999999999999874 3355666666666678899999997 7
Q ss_pred HHHHHHHHcCCCEEEEchHHH
Q 019244 267 TDVFKALALGASGIFIGRPVV 287 (344)
Q Consensus 267 ~dv~kalalGAd~V~ig~~~l 287 (344)
+.+.++-+.|+|.+.+|.+..
T Consensus 250 ~ni~~yA~tGVD~Is~Galth 270 (281)
T PRK06106 250 ETAPAIAASGVDLISVGWLTH 270 (281)
T ss_pred HHHHHHHhcCCCEEEeChhhc
Confidence 888888889999999998654
|
|
| >PRK01362 putative translaldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.018 Score=52.23 Aligned_cols=113 Identities=23% Similarity=0.202 Sum_probs=81.5
Q ss_pred HHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHcc---CCCcEEEecCCCC
Q 019244 189 KDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ---GRIPVFLDGGVRR 265 (344)
Q Consensus 189 ~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~---~~~~via~GGIr~ 265 (344)
+.++.+.+. ++++-+=.+.|...+..+.++|+++|-. .-||-.|+|.+.+..+.++.+... .+..|++ ..+|+
T Consensus 92 ~a~~~L~~~-Gi~v~~T~vfs~~Qa~~Aa~aGa~yisp--yvgRi~d~g~dg~~~i~~~~~~~~~~~~~tkila-AS~r~ 167 (214)
T PRK01362 92 KAVKALSKE-GIKTNVTLIFSANQALLAAKAGATYVSP--FVGRLDDIGTDGMELIEDIREIYDNYGFDTEIIA-ASVRH 167 (214)
T ss_pred HHHHHHHHC-CCceEEeeecCHHHHHHHHhcCCcEEEe--ecchHhhcCCCHHHHHHHHHHHHHHcCCCcEEEE-eecCC
Confidence 345555554 8999888899999999999999998865 446655666666666666665542 2455555 55999
Q ss_pred HHHHHHHHHcCCCEEEEchHHHHHhhhcC--hHHHHHHHHHH
Q 019244 266 GTDVFKALALGASGIFIGRPVVYSLAAEG--EKGVRRVLEML 305 (344)
Q Consensus 266 g~dv~kalalGAd~V~ig~~~l~~~~~~G--~~~v~~~l~~l 305 (344)
..++.++..+|||.+-+.-.++..+..+. .+++..+-+.|
T Consensus 168 ~~~v~~~~~~G~d~iTi~~~vl~~l~~~p~t~~~~~~F~~dw 209 (214)
T PRK01362 168 PMHVLEAALAGADIATIPYKVIKQLFKHPLTDKGLEKFLADW 209 (214)
T ss_pred HHHHHHHHHcCCCEEecCHHHHHHHHcCCchHHHHHHHHHHH
Confidence 99999999999999999988888765332 23444444433
|
|
| >PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0052 Score=57.28 Aligned_cols=76 Identities=17% Similarity=0.242 Sum_probs=60.0
Q ss_pred HHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 210 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
.+.++...+.|++.+.+..-.+.. ....+..+.+.++.+.. .+||+++|||++.+|+.+++.+||+.|.+|+..+.
T Consensus 33 ~~~a~~~~~~g~~~l~i~Dl~~~~-~~~~~n~~~i~~i~~~~--~~pv~~gGGi~s~~d~~~l~~~G~~~vvigs~~~~ 108 (258)
T PRK01033 33 INAVRIFNEKEVDELIVLDIDASK-RGSEPNYELIENLASEC--FMPLCYGGGIKTLEQAKKIFSLGVEKVSINTAALE 108 (258)
T ss_pred HHHHHHHHHcCCCEEEEEECCCCc-CCCcccHHHHHHHHHhC--CCCEEECCCCCCHHHHHHHHHCCCCEEEEChHHhc
Confidence 356788999999999886532110 11245678888888765 79999999999999999999999999999987654
|
|
| >PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0033 Score=57.69 Aligned_cols=66 Identities=24% Similarity=0.330 Sum_probs=51.8
Q ss_pred HcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCC-cEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 218 QAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRI-PVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 218 ~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~-~via~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
-.|...+.+...++. ..+...+.+.++++.. +. ||+..||||+.+++.+++..|||.|.+|+.+..
T Consensus 152 ~~g~~~vYle~gs~~---g~~~~~e~I~~v~~~~--~~~pvivGGGIrs~e~a~~~l~~GAD~VVVGSai~~ 218 (232)
T PRK04169 152 YLGMPIVYLEYGGGA---GDPVPPEMVKAVKKAL--DITPLIYGGGIRSPEQARELMAAGADTIVVGNIIEE 218 (232)
T ss_pred HcCCCeEEEECCCCC---CCCCCHHHHHHHHHhc--CCCcEEEECCCCCHHHHHHHHHhCCCEEEEChHHhh
Confidence 447666666533332 3345677888888766 56 999999999999999999999999999999875
|
|
| >PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0035 Score=57.45 Aligned_cols=76 Identities=25% Similarity=0.354 Sum_probs=57.3
Q ss_pred HHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 210 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
.+.|+...+.|++.+.+-.--+. ..+.+...+.+.++.+.. .+||.+.||||+.+|+.+++.+||+-|.+|+..+.
T Consensus 32 ~~~a~~~~~~g~~~l~ivDLdaa-~~g~~~n~~~i~~i~~~~--~~~i~vgGGIrs~ed~~~ll~~Ga~~Vvigt~~~~ 107 (229)
T PF00977_consen 32 VEVAKAFNEQGADELHIVDLDAA-KEGRGSNLELIKEIAKET--GIPIQVGGGIRSIEDAERLLDAGADRVVIGTEALE 107 (229)
T ss_dssp HHHHHHHHHTT-SEEEEEEHHHH-CCTHHHHHHHHHHHHHHS--SSEEEEESSE-SHHHHHHHHHTT-SEEEESHHHHH
T ss_pred HHHHHHHHHcCCCEEEEEEccCc-ccCchhHHHHHHHHHhcC--CccEEEeCccCcHHHHHHHHHhCCCEEEeChHHhh
Confidence 35677888999999887531110 122356778888888876 59999999999999999999999999999998765
|
Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F .... |
| >PRK08005 epimerase; Validated | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.063 Score=48.58 Aligned_cols=94 Identities=14% Similarity=0.119 Sum_probs=56.7
Q ss_pred HHHHHHHhcCCcEEEEee--cCHHHHHHHHHcCCcEEEEcc--CCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCC
Q 019244 190 DVKWLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVSN--HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 265 (344)
Q Consensus 190 ~i~~i~~~~~~PvivK~v--~~~~~a~~~~~~G~d~I~v~~--~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~ 265 (344)
.+++||+. ++-..+-.- .+.+..+..++ -+|.|.+=. -|.....+-+..++-+.++++... +..|-+||||.
T Consensus 98 ~l~~Ik~~-G~k~GlAlnP~Tp~~~i~~~l~-~vD~VlvMsV~PGf~GQ~f~~~~~~KI~~l~~~~~-~~~I~VDGGI~- 173 (210)
T PRK08005 98 ILADIRAI-GAKAGLALNPATPLLPYRYLAL-QLDALMIMTSEPDGRGQQFIAAMCEKVSQSREHFP-AAECWADGGIT- 173 (210)
T ss_pred HHHHHHHc-CCcEEEEECCCCCHHHHHHHHH-hcCEEEEEEecCCCccceecHHHHHHHHHHHHhcc-cCCEEEECCCC-
Confidence 35666664 443333222 33455554444 467666532 121112234455566666665543 35799999998
Q ss_pred HHHHHHHHHcCCCEEEEchHHH
Q 019244 266 GTDVFKALALGASGIFIGRPVV 287 (344)
Q Consensus 266 g~dv~kalalGAd~V~ig~~~l 287 (344)
.+.+.++.+.|||.+.+|+.++
T Consensus 174 ~~~i~~l~~aGad~~V~GsaiF 195 (210)
T PRK08005 174 LRAARLLAAAGAQHLVIGRALF 195 (210)
T ss_pred HHHHHHHHHCCCCEEEEChHhh
Confidence 6777788999999999998865
|
|
| >PRK09722 allulose-6-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.025 Score=51.88 Aligned_cols=68 Identities=15% Similarity=0.314 Sum_probs=43.7
Q ss_pred hhhHHHHHHHHHHcc---CCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcChHHHHHHHHHHHHHHH
Q 019244 238 PATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFE 310 (344)
Q Consensus 238 ~~~~~~l~~i~~~~~---~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~el~ 310 (344)
+.+++-+.++++... .++.|-+||||. .+.+.++.++|||.+.+|+..+|+. .+...+.++.+++.++
T Consensus 150 ~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~-~~~i~~~~~aGad~~V~Gss~iF~~----~~d~~~~i~~l~~~~~ 220 (229)
T PRK09722 150 PEMLDKIAELKALRERNGLEYLIEVDGSCN-QKTYEKLMEAGADVFIVGTSGLFNL----DEDIDEAWDIMTAQIE 220 (229)
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEECCCC-HHHHHHHHHcCCCEEEEChHHHcCC----CCCHHHHHHHHHHHHH
Confidence 344455555554432 246799999999 5678888999999999998766531 1123345555555443
|
|
| >PRK11750 gltB glutamate synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0054 Score=68.64 Aligned_cols=120 Identities=13% Similarity=0.164 Sum_probs=87.4
Q ss_pred HHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHc-----cCCCcEEE-ecCCCCHHHHHHHHHcCCCEEEEch
Q 019244 211 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT-----QGRIPVFL-DGGVRRGTDVFKALALGASGIFIGR 284 (344)
Q Consensus 211 ~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~-----~~~~~via-~GGIr~g~dv~kalalGAd~V~ig~ 284 (344)
++|..+++.|+..|++|..+-.......|.+-++..+...+ +.++.||+ +|.+|+.-|++..+.+||++|.-.-
T Consensus 601 ~~A~~Av~~G~~ilILSDr~~~~~~~~IP~LLAv~aVH~hLir~glR~~vsLIveSGe~RevHhfA~LiGyGA~AV~PYL 680 (1485)
T PRK11750 601 DEAEQAVRDGTVLLVLSDRNIAKGRLPIPAAMAVGAVQHRLVDKGLRCDANIIVETASARDPHHFAVLLGFGATAVYPYL 680 (1485)
T ss_pred HHHHHHHHCCCeEEEEcCCCCCCCcCCcCHHHHHHHHHHHHHHcCCcceeeEEEecCCcCCHHHHHHHHhcChhhhhhHH
Confidence 45778899999999999764321112345555555554433 45788998 9999999999999999999995433
Q ss_pred HHH--HHhhhcC------hHHHHHHHHHHHHHHHHHHHHhCCCCHhhhccccee
Q 019244 285 PVV--YSLAAEG------EKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIV 330 (344)
Q Consensus 285 ~~l--~~~~~~G------~~~v~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l~ 330 (344)
++- ..+...| .+.+.++++.+.++|...|..+|.++++.-++..+.
T Consensus 681 A~eti~~l~~~g~l~~~~~~a~~ny~~A~~kGLlKImsKMGIStl~SY~gaqiF 734 (1485)
T PRK11750 681 AYETLGDLVDTGEILKDYRQVMLNYRKGINKGLYKIMSKMGISTIASYRGSQLF 734 (1485)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHhhcchhhHHhcCCcccc
Confidence 321 1121223 367889999999999999999999999988776554
|
|
| >cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0034 Score=57.65 Aligned_cols=74 Identities=23% Similarity=0.291 Sum_probs=59.6
Q ss_pred HHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHH
Q 019244 210 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 287 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l 287 (344)
.+.|+...+.|+|.+.+..--+. .......+.+.++.+.+ .+|+.+.||||+.+|+.+++.+||+-|.+|+..+
T Consensus 38 ~~~a~~~~~~g~~~l~i~DLd~~--~~~~~n~~~i~~i~~~~--~~~v~vgGGir~~edv~~~l~~Ga~~viigt~~~ 111 (233)
T cd04723 38 LDVARAYKELGFRGLYIADLDAI--MGRGDNDEAIRELAAAW--PLGLWVDGGIRSLENAQEWLKRGASRVIVGTETL 111 (233)
T ss_pred HHHHHHHHHCCCCEEEEEeCccc--cCCCccHHHHHHHHHhC--CCCEEEecCcCCHHHHHHHHHcCCCeEEEcceec
Confidence 46688888999999988643221 12345677888887766 6899999999999999999999999999999764
|
The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl |
| >PRK06801 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.094 Score=49.69 Aligned_cols=107 Identities=21% Similarity=0.286 Sum_probs=73.8
Q ss_pred cCHHHHHHHH-HcCCcEEEEcc---CCCCCCCCch-hhHHHHHHHHHHccCCCcEEEecC--CCCHHHHHHHHHcCCCEE
Q 019244 208 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGG--VRRGTDVFKALALGASGI 280 (344)
Q Consensus 208 ~~~~~a~~~~-~~G~d~I~v~~---~gG~~~~~g~-~~~~~l~~i~~~~~~~~~via~GG--Ir~g~dv~kalalGAd~V 280 (344)
.++++++... +.|+|++-++. ||-. +..+ ..++.|.++++.+ ++|+.+-|| |. .+++.+++.+|++-|
T Consensus 156 T~pe~a~~f~~~tgvD~LAvaiGt~Hg~y--~~~~~l~~e~l~~i~~~~--~~PLVlHGGSgi~-~e~~~~~i~~Gi~KI 230 (286)
T PRK06801 156 TDPQLARDFVDRTGIDALAVAIGNAHGKY--KGEPKLDFARLAAIHQQT--GLPLVLHGGSGIS-DADFRRAIELGIHKI 230 (286)
T ss_pred CCHHHHHHHHHHHCcCEEEeccCCCCCCC--CCCCCCCHHHHHHHHHhc--CCCEEEECCCCCC-HHHHHHHHHcCCcEE
Confidence 4678988877 89999999953 2221 2222 4677888888876 699999998 77 688999999999999
Q ss_pred EEchHHHHHhhh-------cCh-------HHHHHHHHHHHHHHHHHHHHhCCC
Q 019244 281 FIGRPVVYSLAA-------EGE-------KGVRRVLEMLREEFELAMALSGCR 319 (344)
Q Consensus 281 ~ig~~~l~~~~~-------~G~-------~~v~~~l~~l~~el~~~m~~~G~~ 319 (344)
-+++.+..+... ... .-.....+.+++..+..|..+|+.
T Consensus 231 Nv~T~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~gs~ 283 (286)
T PRK06801 231 NFYTGMSQAALAAVEQRMTHRHAIYDEFAELLLGIEEAISDTVAQQMRIFGSA 283 (286)
T ss_pred EehhHHHHHHHHHHHHHHHhCCcccCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999988654221 010 112233345666667777777653
|
|
| >PLN02460 indole-3-glycerol-phosphate synthase | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0086 Score=57.66 Aligned_cols=166 Identities=14% Similarity=0.185 Sum_probs=96.8
Q ss_pred HHHHHHHHcCCcEEEeccCCccccccHHHHHh---h-cCCCCccccccccccccccccc--ccchhhHH--HHhhcCCCC
Q 019244 114 QLVRRAERAGFKAIALTVDTPRLGRREADIKN---R-FTLPPFLTLKNFQGLDLGKMDE--ANDSGLAA--YVAGQIDRS 185 (344)
Q Consensus 114 ~~i~~a~~ag~~~l~~tvd~~~~g~r~~~~~~---~-~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~ 185 (344)
++.+..+++|..++.|-.|...|+-...+++. . ..+|. .-+++-.+..+. ....+... ++....+ +
T Consensus 143 ~iA~~Ye~~GA~aISVLTd~~~F~Gs~e~L~~vr~~~v~lPv-----LrKDFIID~yQI~eAr~~GADAVLLIaaiL~-~ 216 (338)
T PLN02460 143 EIAQAYEKGGAACLSVLTDEKYFQGSFENLEAIRNAGVKCPL-----LCKEFIVDAWQIYYARSKGADAILLIAAVLP-D 216 (338)
T ss_pred HHHHHHHhCCCcEEEEecCcCcCCCCHHHHHHHHHcCCCCCE-----eeccccCCHHHHHHHHHcCCCcHHHHHHhCC-H
Confidence 45566778899988888887777665555442 1 22221 001100001110 00000000 0100000 1
Q ss_pred CcHHHHHHHHHhcCCcEEEEeecCHHHHHHHHHc-CCcEEEEccCCCCCCCCchhhHHHHHHHHH-----Hc-cCCCcEE
Q 019244 186 LSWKDVKWLQTITKLPILVKGVLTAEDARIAVQA-GAAGIIVSNHGARQLDYVPATIMALEEVVK-----AT-QGRIPVF 258 (344)
Q Consensus 186 ~~~~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~-G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~-----~~-~~~~~vi 258 (344)
-.+..+-.+....++-++| +|-+.+++.++.++ |++.|-|-|..=..+..-..+ ..++.. .+ +.++-++
T Consensus 217 ~~L~~l~~~A~~LGme~LV-EVH~~~ElerAl~~~ga~iIGINNRdL~Tf~vDl~~---t~~L~~~~~~~~i~~~~~~~V 292 (338)
T PLN02460 217 LDIKYMLKICKSLGMAALI-EVHDEREMDRVLGIEGVELIGINNRSLETFEVDISN---TKKLLEGERGEQIREKGIIVV 292 (338)
T ss_pred HHHHHHHHHHHHcCCeEEE-EeCCHHHHHHHHhcCCCCEEEEeCCCCCcceECHHH---HHHHhhhccccccCCCCeEEE
Confidence 1233445555556777766 67899999999998 999998877533222222222 222332 22 2356688
Q ss_pred EecCCCCHHHHHHHHHcCCCEEEEchHHHHH
Q 019244 259 LDGGVRRGTDVFKALALGASGIFIGRPVVYS 289 (344)
Q Consensus 259 a~GGIr~g~dv~kalalGAd~V~ig~~~l~~ 289 (344)
+-+||.+..|+.....+|||+|.||..+|..
T Consensus 293 sESGI~t~~Dv~~l~~~GadAvLVGEsLMr~ 323 (338)
T PLN02460 293 GESGLFTPDDVAYVQNAGVKAVLVGESLVKQ 323 (338)
T ss_pred ECCCCCCHHHHHHHHHCCCCEEEECHHHhCC
Confidence 8999999999999999999999999999874
|
|
| >PRK12376 putative translaldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.02 Score=52.64 Aligned_cols=115 Identities=17% Similarity=0.141 Sum_probs=80.2
Q ss_pred HHHHHHHHHhcCCcEEEEeecCHHHHHHHHHc----CCcEEEEccCCCCCCCCchhhHHHHHHHHHHcc--CCCcEEEec
Q 019244 188 WKDVKWLQTITKLPILVKGVLTAEDARIAVQA----GAAGIIVSNHGARQLDYVPATIMALEEVVKATQ--GRIPVFLDG 261 (344)
Q Consensus 188 ~~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~----G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~--~~~~via~G 261 (344)
++.++.+.+. ++++-+=.+.|+.++..+.++ |+++|-. .-||-.|.|......+.++++.+. .+..|++.+
T Consensus 102 l~Ai~~L~~~-GI~vn~T~vfs~~Qa~~a~~A~ag~ga~yisp--fvgR~dd~g~D~~~~i~~i~~i~~~~~~tkILaAS 178 (236)
T PRK12376 102 IPLIKKLSAD-GVKLNVTAIFTIEQVKEVVDALTPGVPAIVSV--FAGRIADTGVDPVPLMKEALAICHSKPGVELLWAS 178 (236)
T ss_pred HHHHHHHHHC-CCeEEEeeecCHHHHHHHHHHhcCCCCeEEEE--ecchhhhcCCCcHHHHHHHHHHHHhCCCcEEEEEe
Confidence 3456666554 899988889999998755555 5887755 446654555555555655554442 356777765
Q ss_pred CCCCHHHHHHHHHcCCCEEEEchHHHHHhhh-------cChHHHHHHHHHHH
Q 019244 262 GVRRGTDVFKALALGASGIFIGRPVVYSLAA-------EGEKGVRRVLEMLR 306 (344)
Q Consensus 262 GIr~g~dv~kalalGAd~V~ig~~~l~~~~~-------~G~~~v~~~l~~l~ 306 (344)
||+..++.+++.+|||.+-+.-.++..+.. ...++++.+.+.|.
T Consensus 179 -iR~~~~v~~a~~~Gad~vTvp~~v~~~l~~~~~~~~~~t~~~v~~F~~Dw~ 229 (236)
T PRK12376 179 -PREVYNIIQADQLGCDIITVTPDVLKKLPLLGKDLEELSLETVKGFAKDAQ 229 (236)
T ss_pred -cCCHHHHHHHHHcCCCEEEcCHHHHHHHHhcCCCCCchhHHHHHHHHHHHH
Confidence 999999999999999999999888877652 23455555555543
|
|
| >PF04898 Glu_syn_central: Glutamate synthase central domain; InterPro: IPR006982 Glutamate synthase (GltS)1 is a key enzyme in the early stages of the assimilation of ammonia in bacteria, yeasts, and plants | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0084 Score=56.50 Aligned_cols=120 Identities=22% Similarity=0.284 Sum_probs=76.3
Q ss_pred HHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHc-----cCCCcEEE-ecCCCCHHHHHHHHHcCCCEEEEch
Q 019244 211 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT-----QGRIPVFL-DGGVRRGTDVFKALALGASGIFIGR 284 (344)
Q Consensus 211 ~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~-----~~~~~via-~GGIr~g~dv~kalalGAd~V~ig~ 284 (344)
++|..+++.|+..|++|..+-.......|.+-++..+..++ +.++.||+ +|-+|+.-|++..+..||++|.=--
T Consensus 146 ~ea~~Av~~G~~ilILsDr~~~~~~~~IP~lLAv~avh~~Li~~glR~~~slIvesge~re~Hh~a~LlGyGA~AV~PYl 225 (287)
T PF04898_consen 146 EEAEAAVREGANILILSDRNASPDRAPIPSLLAVSAVHHHLIREGLRTRVSLIVESGEAREVHHFATLLGYGADAVNPYL 225 (287)
T ss_dssp HHHHHHHHCT-SEEEEESTC-CTTEEE--HHHHHHHHHHHHHCTT-CCC-EEEEEESS--SHHHHHHHHCTT-SEEEEHC
T ss_pred HHHHHHHHcCCcEEEECCCCCCcCcccccHHHHHHHHHHHHHHcCCcceeeEEEecCCcccHHHHHHHHcCCHhhhcHHH
Confidence 45788999999999999765221112234444455454443 34677877 8899999999999999999985221
Q ss_pred HH--HHHhhhcC-------hHHHHHHHHHHHHHHHHHHHHhCCCCHhhhccccee
Q 019244 285 PV--VYSLAAEG-------EKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIV 330 (344)
Q Consensus 285 ~~--l~~~~~~G-------~~~v~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l~ 330 (344)
.+ +..+...| ++.+.++++.+.++|...|..+|..+++.-++..+.
T Consensus 226 a~e~~~~~~~~~~~~~~~~~~~~~ny~~a~~kGllKimSKMGIstl~SY~gaqiF 280 (287)
T PF04898_consen 226 AYETIRELAERGELPELSPEEAIKNYRKALEKGLLKIMSKMGISTLQSYRGAQIF 280 (287)
T ss_dssp CHHHHHHCCCCCCCCT--HHHHHHHHHHHHHHHHHHHHHCTT--BHHHHCCS--E
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcChHHhhhcccceee
Confidence 11 11222223 367899999999999999999999999988766543
|
In bacteria, L-glutamate is involved in osmoregulation, is the precursor for other amino acids, and can be the precursor for haem biosynthesis. In plants, GltS is especially essential in the reassimilation of ammonia released by photorespiration. On the basis of the amino acid sequence and the nature of the electron donor, three different classes of GltS can de defined as follows: 1) ferredoxin-dependent GltS (Fd-GltS), 2) NADPH-dependent GltS (NADPH-GltS), and 3) NADH-dependent GltS (properties of the three classes have been reviewed extensively []). The enzyme is a complex iron-sulphur flavoprotein catalysing the reductive transfer of the amido nitrogen from L-glutamine to 2-oxoglutarate to form two molecules of L-glutamate via intramolecular channelling of ammonia from the amidotransferase domain to the FMN-binding domain. Reaction of amidotransferase domain: |
| >PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0089 Score=56.31 Aligned_cols=87 Identities=20% Similarity=0.190 Sum_probs=68.2
Q ss_pred HHHHHHHHhcC--CcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCH
Q 019244 189 KDVKWLQTITK--LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 266 (344)
Q Consensus 189 ~~i~~i~~~~~--~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g 266 (344)
+.++.+|+..+ .+|. =++.|.+++..+.++|+|.|-++|. +.+.+.++.+.++++..+.++|||. .
T Consensus 181 ~av~~~r~~~~~~~kIe-VEv~slee~~ea~~~gaDiImLDn~----------s~e~l~~av~~~~~~~~leaSGgI~-~ 248 (281)
T PRK06543 181 EALRHVRAQLGHTTHVE-VEVDRLDQIEPVLAAGVDTIMLDNF----------SLDDLREGVELVDGRAIVEASGNVN-L 248 (281)
T ss_pred HHHHHHHHhCCCCCcEE-EEeCCHHHHHHHHhcCCCEEEECCC----------CHHHHHHHHHHhCCCeEEEEECCCC-H
Confidence 46888888764 3443 3678999999999999999999874 2344555555555677899999997 7
Q ss_pred HHHHHHHHcCCCEEEEchHHH
Q 019244 267 TDVFKALALGASGIFIGRPVV 287 (344)
Q Consensus 267 ~dv~kalalGAd~V~ig~~~l 287 (344)
..+.++...|+|.+.+|.+..
T Consensus 249 ~ni~~yA~tGVD~Is~galth 269 (281)
T PRK06543 249 NTVGAIASTGVDVISVGALTH 269 (281)
T ss_pred HHHHHHHhcCCCEEEeCcccc
Confidence 888888889999999998653
|
|
| >PLN02411 12-oxophytodienoate reductase | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0072 Score=59.82 Aligned_cols=98 Identities=13% Similarity=0.022 Sum_probs=64.8
Q ss_pred HHHHHHHHHhcC-CcEEEEeecC-----------H----HHHHHHHHc------CCcEEEEccCCCC---CCC---Cchh
Q 019244 188 WKDVKWLQTITK-LPILVKGVLT-----------A----EDARIAVQA------GAAGIIVSNHGAR---QLD---YVPA 239 (344)
Q Consensus 188 ~~~i~~i~~~~~-~PvivK~v~~-----------~----~~a~~~~~~------G~d~I~v~~~gG~---~~~---~g~~ 239 (344)
.+.|+.||+.++ -.|.+|.... . +.++.+.+. |+|+|.|+..... ... .+..
T Consensus 219 lEIi~aVr~~vg~d~vgvRiS~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~vd~i~vs~g~~~~~~~~~~~~~~~~ 298 (391)
T PLN02411 219 MQVVQAVVSAIGADRVGVRVSPAIDHLDATDSDPLNLGLAVVERLNKLQLQNGSKLAYLHVTQPRYTAYGQTESGRHGSE 298 (391)
T ss_pred HHHHHHHHHHcCCCeEEEEEcccccccCCCCCcchhhHHHHHHHHHHHHhhcCCCeEEEEecCCcccccCCCcccccCCc
Confidence 467999999884 2488887521 1 123444432 5999999853110 000 1111
Q ss_pred --hHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcC-CCEEEEchHHHH
Q 019244 240 --TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 288 (344)
Q Consensus 240 --~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalG-Ad~V~ig~~~l~ 288 (344)
......++++.+ ++|||+.||| +..++.++++.| ||+|.+||+++-
T Consensus 299 ~~~~~~a~~ik~~v--~~pvi~~G~i-~~~~a~~~l~~g~aDlV~~gR~~ia 347 (391)
T PLN02411 299 EEEAQLMRTLRRAY--QGTFMCSGGF-TRELGMQAVQQGDADLVSYGRLFIS 347 (391)
T ss_pred cchhHHHHHHHHHc--CCCEEEECCC-CHHHHHHHHHcCCCCEEEECHHHHh
Confidence 112345666666 6899999999 578899999999 999999999985
|
|
| >PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0039 Score=57.31 Aligned_cols=72 Identities=15% Similarity=0.070 Sum_probs=54.5
Q ss_pred HHHHHHHHcCCcEEEEccC--CCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 211 EDARIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 211 ~~a~~~~~~G~d~I~v~~~--gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
+-++++.+.|+..|.+.+- -|+. .| +.++.+..+.+. ..+++++|||++-+|+.++..+|+++|.+|++++.
T Consensus 150 e~~~~l~~~g~~~ii~tdI~~dGt~--~G-~d~el~~~~~~~---~~~viasGGv~s~~Dl~~l~~~G~~gvivg~Aly~ 223 (232)
T PRK13586 150 DGIKKVNELELLGIIFTYISNEGTT--KG-IDYNVKDYARLI---RGLKEYAGGVSSDADLEYLKNVGFDYIIVGMAFYL 223 (232)
T ss_pred HHHHHHHhcCCCEEEEecccccccC--cC-cCHHHHHHHHhC---CCCEEEECCCCCHHHHHHHHHCCCCEEEEehhhhc
Confidence 5578889999988877542 2221 12 456667666543 34599999999999999999999999999999874
|
|
| >cd02812 PcrB_like PcrB_like proteins | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.005 Score=55.98 Aligned_cols=69 Identities=22% Similarity=0.255 Sum_probs=55.0
Q ss_pred HHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 213 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 213 a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
|..+...|...|.+... |. ....+.+..+++.+. ++||+..|||||.+++.+++.+|||.|.+|+.+..
T Consensus 141 A~aae~~g~~ivyLe~S-G~-----~~~~e~I~~v~~~~~-~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGsai~~ 209 (219)
T cd02812 141 ALAAEYLGMPIVYLEYS-GA-----YGPPEVVRAVKKVLG-DTPLIVGGGIRSGEQAKEMAEAGADTIVVGNIVEE 209 (219)
T ss_pred HHHHHHcCCeEEEeCCC-CC-----cCCHHHHHHHHHhcC-CCCEEEeCCCCCHHHHHHHHHcCCCEEEECchhhC
Confidence 56677889888888722 22 245567777776542 69999999999999999999999999999998874
|
One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown. |
| >PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P) | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0066 Score=55.50 Aligned_cols=69 Identities=23% Similarity=0.343 Sum_probs=46.2
Q ss_pred HHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHH
Q 019244 216 AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 289 (344)
Q Consensus 216 ~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~ 289 (344)
..=.|...|.+--..|+ .++++ ..+.++++.+ .++|+|..|||||.+++.+++..|||.|.+|+.|...
T Consensus 149 ~~~~g~~~iYLEaGSGa---~~~v~-~~v~~~~~~~-~~~~LivGGGIrs~e~A~~~~~aGAD~IVvGn~iee~ 217 (230)
T PF01884_consen 149 AEYLGMPIIYLEAGSGA---YGPVP-EEVIAAVKKL-SDIPLIVGGGIRSPEQAREMAEAGADTIVVGNAIEED 217 (230)
T ss_dssp HHHTT-SEEEEE--TTS---SS-HH-HHHHHHHHHS-SSSEEEEESS--SHHHHHHHHCTTSSEEEESCHHHHH
T ss_pred HHHhCCCEEEEEeCCCC---CCCcc-HHHHHHHHhc-CCccEEEeCCcCCHHHHHHHHHCCCCEEEECCEEEEc
Confidence 33467888888542222 22332 3344455554 4899999999999999999999999999999998653
|
This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B. |
| >PRK12653 fructose-6-phosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.036 Score=50.46 Aligned_cols=113 Identities=15% Similarity=0.140 Sum_probs=77.8
Q ss_pred HHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHc---cCCCcEEEecCCCC
Q 019244 189 KDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRR 265 (344)
Q Consensus 189 ~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~---~~~~~via~GGIr~ 265 (344)
+.++.+++. ++++-+=.+.|.+++..+..+|+++|-. .-||-.+.|...+..+.++.+.. +.+..|++. .+|+
T Consensus 94 ~A~~~L~~~-GI~vn~T~vfs~~Qa~~Aa~aGa~yIsp--yvgR~~~~g~dg~~~i~~i~~~~~~~~~~tkILaA-S~r~ 169 (220)
T PRK12653 94 AAIKMLKAE-GIPTLGTAVYGAAQGLLSALAGAEYVAP--YVNRIDAQGGSGIQTVTDLQQLLKMHAPQAKVLAA-SFKT 169 (220)
T ss_pred HHHHHHHHc-CCCeeEEEecCHHHHHHHHhcCCcEEEe--ecChHhhcCCChHHHHHHHHHHHHhcCCCcEEEEE-ecCC
Confidence 345555554 8999888899999999999999998865 34553344444444444444433 235666664 4999
Q ss_pred HHHHHHHHHcCCCEEEEchHHHHHhhhcC--hHHHHHHHHHH
Q 019244 266 GTDVFKALALGASGIFIGRPVVYSLAAEG--EKGVRRVLEML 305 (344)
Q Consensus 266 g~dv~kalalGAd~V~ig~~~l~~~~~~G--~~~v~~~l~~l 305 (344)
..++.+++.+|||.+-+.-.++..+..+- .++++.+.+.|
T Consensus 170 ~~~v~~~~~~G~d~vTip~~vl~~l~~~p~t~~~~~~F~~dw 211 (220)
T PRK12653 170 PRQALDCLLAGCESITLPLDVAQQMISYPAVDAAVAKFEQDW 211 (220)
T ss_pred HHHHHHHHHcCCCEEECCHHHHHHHHcCCchHHHHHHHHHHH
Confidence 99999999999999999999988765332 23444444433
|
|
| >PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: |
Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0037 Score=55.13 Aligned_cols=89 Identities=17% Similarity=0.178 Sum_probs=57.2
Q ss_pred cHHHHHHHHHhcCCcEE--EEee---------cCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCC
Q 019244 187 SWKDVKWLQTITKLPIL--VKGV---------LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRI 255 (344)
Q Consensus 187 ~~~~i~~i~~~~~~Pvi--vK~v---------~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~ 255 (344)
..++|+.+++.+++||| +|.. .+.++++.+.++|+|.|-++..... .. .+..+.+.++++. .
T Consensus 20 ~~~dI~aik~~v~lPIIGi~K~~y~~~~V~ITPT~~ev~~l~~aGadIIAlDaT~R~-Rp--~~l~~li~~i~~~----~ 92 (192)
T PF04131_consen 20 GVEDIRAIKKAVDLPIIGIIKRDYPDSDVYITPTLKEVDALAEAGADIIALDATDRP-RP--ETLEELIREIKEK----Y 92 (192)
T ss_dssp SHHHHHHHHTTB-S-EEEE-B-SBTTSS--BS-SHHHHHHHHHCT-SEEEEE-SSSS--S--S-HHHHHHHHHHC----T
T ss_pred CHHHHHHHHHhcCCCEEEEEeccCCCCCeEECCCHHHHHHHHHcCCCEEEEecCCCC-CC--cCHHHHHHHHHHh----C
Confidence 45789999999999985 3531 4679999999999999999865321 11 2333455666542 2
Q ss_pred cEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 019244 256 PVFLDGGVRRGTDVFKALALGASGIFIG 283 (344)
Q Consensus 256 ~via~GGIr~g~dv~kalalGAd~V~ig 283 (344)
.++...|.|-+|...+..+|+|+|+--
T Consensus 93 -~l~MADist~ee~~~A~~~G~D~I~TT 119 (192)
T PF04131_consen 93 -QLVMADISTLEEAINAAELGFDIIGTT 119 (192)
T ss_dssp -SEEEEE-SSHHHHHHHHHTT-SEEE-T
T ss_pred -cEEeeecCCHHHHHHHHHcCCCEEEcc
Confidence 444556899999999999999998643
|
; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B. |
| >PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0069 Score=54.92 Aligned_cols=81 Identities=26% Similarity=0.223 Sum_probs=60.2
Q ss_pred cHHHHHHHHHhcC----CcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecC
Q 019244 187 SWKDVKWLQTITK----LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 262 (344)
Q Consensus 187 ~~~~i~~i~~~~~----~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GG 262 (344)
..+.|+.+++.++ +.|.+..|++.++++.+.++|+++|+--+ ...+.+..+. . .++|++- |
T Consensus 51 a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~FivsP~----------~~~~v~~~~~-~--~~i~~iP--G 115 (213)
T PRK06552 51 ASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFIVSPS----------FNRETAKICN-L--YQIPYLP--G 115 (213)
T ss_pred HHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEEECCC----------CCHHHHHHHH-H--cCCCEEC--C
Confidence 3467999998873 55777778999999999999999996311 0123333222 1 2566654 8
Q ss_pred CCCHHHHHHHHHcCCCEEEE
Q 019244 263 VRRGTDVFKALALGASGIFI 282 (344)
Q Consensus 263 Ir~g~dv~kalalGAd~V~i 282 (344)
+.|+.++.+++.+|||.|.+
T Consensus 116 ~~T~~E~~~A~~~Gad~vkl 135 (213)
T PRK06552 116 CMTVTEIVTALEAGSEIVKL 135 (213)
T ss_pred cCCHHHHHHHHHcCCCEEEE
Confidence 99999999999999999998
|
|
| >PRK13813 orotidine 5'-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0038 Score=56.35 Aligned_cols=118 Identities=17% Similarity=0.193 Sum_probs=71.7
Q ss_pred CcHHHHHHHHHhcCCcEEEEee---cCHHH-HHHHHHcCCcEEEEccCCCCC---------------------CC-----
Q 019244 186 LSWKDVKWLQTITKLPILVKGV---LTAED-ARIAVQAGAAGIIVSNHGARQ---------------------LD----- 235 (344)
Q Consensus 186 ~~~~~i~~i~~~~~~PvivK~v---~~~~~-a~~~~~~G~d~I~v~~~gG~~---------------------~~----- 235 (344)
+..+.++++|+.+.+|+=+|.- .+++. ++.+.++|+|.+++....|.. +.
T Consensus 42 ~G~~~v~~ir~~~~i~~D~k~~di~~~~~~~~~~~~~~gad~vtvh~e~g~~~l~~~i~~~~~~g~~~~v~~~~~~~~~~ 121 (215)
T PRK13813 42 SGLGIIEELKRYAPVIADLKVADIPNTNRLICEAVFEAGAWGIIVHGFTGRDSLKAVVEAAAESGGKVFVVVEMSHPGAL 121 (215)
T ss_pred hCHHHHHHHHhcCCEEEEeeccccHHHHHHHHHHHHhCCCCEEEEcCcCCHHHHHHHHHHHHhcCCeEEEEEeCCCCCCC
Confidence 3457899999877666667874 23343 377889999999997533210 00
Q ss_pred -----------------------CchhhHHHHHHHHHHccCCCcEEEecCCCCHH-HHHHHHHcCCCEEEEchHHHHHhh
Q 019244 236 -----------------------YVPATIMALEEVVKATQGRIPVFLDGGVRRGT-DVFKALALGASGIFIGRPVVYSLA 291 (344)
Q Consensus 236 -----------------------~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~-dv~kalalGAd~V~ig~~~l~~~~ 291 (344)
+.....+-+.++++....++ .+.+|||+... ++.+++..|||.+.+||+++.+
T Consensus 122 ~~~~~~~~~v~~m~~e~G~~g~~~~~~~~~~i~~l~~~~~~~~-~ivdgGI~~~g~~~~~~~~aGad~iV~Gr~I~~~-- 198 (215)
T PRK13813 122 EFIQPHADKLAKLAQEAGAFGVVAPATRPERVRYIRSRLGDEL-KIISPGIGAQGGKAADAIKAGADYVIVGRSIYNA-- 198 (215)
T ss_pred CCHHHHHHHHHHHHHHhCCCeEEECCCcchhHHHHHHhcCCCc-EEEeCCcCCCCCCHHHHHHcCCCEEEECcccCCC--
Confidence 00011122233333332223 34999999863 6778889999999999996642
Q ss_pred hcChHHHHHHHHHHHHHHH
Q 019244 292 AEGEKGVRRVLEMLREEFE 310 (344)
Q Consensus 292 ~~G~~~v~~~l~~l~~el~ 310 (344)
+...+.++.++++++
T Consensus 199 ----~d~~~~~~~l~~~~~ 213 (215)
T PRK13813 199 ----ADPREAAKAINEEIR 213 (215)
T ss_pred ----CCHHHHHHHHHHHHh
Confidence 123455666666554
|
|
| >PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.019 Score=58.60 Aligned_cols=95 Identities=20% Similarity=0.237 Sum_probs=66.0
Q ss_pred HHHHHHhcCCcEEEEee-cCHHHHHHHHHcCCcEEEEccCCCCC--CCCchhhHHHHHHHHHHccCCCcEEEecCCCCHH
Q 019244 191 VKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSNHGARQ--LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 267 (344)
Q Consensus 191 i~~i~~~~~~PvivK~v-~~~~~a~~~~~~G~d~I~v~~~gG~~--~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~ 267 (344)
+...|+..+-..++... .+.+++..+.+.|+|+|.++--..+. .+.-+..++.+.++.+.. ++||++-|||. ..
T Consensus 380 ~~~~r~~~~~~~~iG~S~h~~~e~~~a~~~gadyi~~gpif~t~tk~~~~~~g~~~~~~~~~~~--~~Pv~aiGGI~-~~ 456 (502)
T PLN02898 380 VRLARSLLGPGKIIGVSCKTPEQAEQAWKDGADYIGCGGVFPTNTKANNKTIGLDGLREVCEAS--KLPVVAIGGIS-AS 456 (502)
T ss_pred HHHHHHhcCCCCEEEEeCCCHHHHHHHhhcCCCEEEECCeecCCCCCCCCCCCHHHHHHHHHcC--CCCEEEECCCC-HH
Confidence 34555554433444443 57899999999999999875321111 111122356666665544 79999999996 89
Q ss_pred HHHHHHHcCCC---EEEEchHHHH
Q 019244 268 DVFKALALGAS---GIFIGRPVVY 288 (344)
Q Consensus 268 dv~kalalGAd---~V~ig~~~l~ 288 (344)
++.+.+++||+ .|.+++.++.
T Consensus 457 ~~~~~~~~G~~~~~gvav~~~i~~ 480 (502)
T PLN02898 457 NAASVMESGAPNLKGVAVVSALFD 480 (502)
T ss_pred HHHHHHHcCCCcCceEEEEeHHhc
Confidence 99999999999 9999999874
|
|
| >PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.013 Score=53.93 Aligned_cols=75 Identities=21% Similarity=0.167 Sum_probs=58.3
Q ss_pred HHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 210 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
.+.|+...+.|++.+.+-.-.+.. ...+..+.+.++.+.. ..|+...|||||.+|+.+++.+||+-|.+|+..+.
T Consensus 33 ~~~a~~~~~~ga~~lhivDLd~a~--~~~~n~~~i~~i~~~~--~~~v~vGGGIrs~e~~~~~l~~Ga~kvvigt~a~~ 107 (232)
T PRK13586 33 IEIASKLYNEGYTRIHVVDLDAAE--GVGNNEMYIKEISKIG--FDWIQVGGGIRDIEKAKRLLSLDVNALVFSTIVFT 107 (232)
T ss_pred HHHHHHHHHCCCCEEEEEECCCcC--CCcchHHHHHHHHhhC--CCCEEEeCCcCCHHHHHHHHHCCCCEEEECchhhC
Confidence 366888889999999886533321 2345567788877633 25999999999999999999999999999997654
|
|
| >PRK12655 fructose-6-phosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.048 Score=49.65 Aligned_cols=113 Identities=17% Similarity=0.139 Sum_probs=78.5
Q ss_pred HHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHc---cCCCcEEEecCCCCH
Q 019244 190 DVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRRG 266 (344)
Q Consensus 190 ~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~---~~~~~via~GGIr~g 266 (344)
.++.+.+. ++++-+=.+.|++++..+..+|+++|-. .-||-.+.|...+..+.++.+.. +.+..|++. .+|+.
T Consensus 95 Ai~~L~~~-GI~vn~T~vfs~~Qa~~Aa~aGa~yIsp--yvgR~~~~g~dg~~~i~~~~~~~~~~~~~tkILaA-S~r~~ 170 (220)
T PRK12655 95 AIKKLKKE-GIPTLGTAVYSAAQGLLAALAGAKYVAP--YVNRVDAQGGDGIRMVQELQTLLEMHAPESMVLAA-SFKTP 170 (220)
T ss_pred HHHHHHHC-CCceeEeEecCHHHHHHHHHcCCeEEEe--ecchHhHcCCCHHHHHHHHHHHHHhcCCCcEEEEE-ecCCH
Confidence 45555543 8999888899999999999999997755 33443333434445555554433 235666665 49999
Q ss_pred HHHHHHHHcCCCEEEEchHHHHHhhhcC--hHHHHHHHHHHH
Q 019244 267 TDVFKALALGASGIFIGRPVVYSLAAEG--EKGVRRVLEMLR 306 (344)
Q Consensus 267 ~dv~kalalGAd~V~ig~~~l~~~~~~G--~~~v~~~l~~l~ 306 (344)
.++.+++.+||+.+-+.-.++..+..+- .++++.+.+.|.
T Consensus 171 ~~v~~~~~~G~d~vTip~~vl~~l~~~p~t~~~~~~F~~dw~ 212 (220)
T PRK12655 171 RQALDCLLAGCQSITLPLDVAQQMLNTPAVESAIEKFEQDWQ 212 (220)
T ss_pred HHHHHHHHcCCCEEECCHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 9999999999999999999888765332 245555555543
|
|
| >KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0055 Score=59.90 Aligned_cols=98 Identities=24% Similarity=0.253 Sum_probs=77.1
Q ss_pred HHHHHHHHhcCCcEEEEee------cCHHHHHHHHHcCCcEEEEccCCCCC--CCCchhhHHHHHHHHHHccCCCcEEEe
Q 019244 189 KDVKWLQTITKLPILVKGV------LTAEDARIAVQAGAAGIIVSNHGARQ--LDYVPATIMALEEVVKATQGRIPVFLD 260 (344)
Q Consensus 189 ~~i~~i~~~~~~PvivK~v------~~~~~a~~~~~~G~d~I~v~~~gG~~--~~~g~~~~~~l~~i~~~~~~~~~via~ 260 (344)
..+..+.+..++|+-+|.. -+.+..+++.+.|+.+|.|.. .+. ...-+++.+.+.++...++ .+|||+.
T Consensus 139 ~IL~sLvk~~~vpvtckIR~L~s~edtL~lv~ri~~tgi~ai~vh~--rt~d~r~~~~~~~~~i~~i~~~~~-~V~vi~n 215 (477)
T KOG2334|consen 139 AILYSLVKGNKVPVTCKIRLLDSKEDTLKLVKRICATGIAAITVHC--RTRDERNQEPATKDYIREIAQACQ-MVPVIVN 215 (477)
T ss_pred HHHHHHHhcCcccceeEEEecCCcccHHHHHHHHHhcCCceEEEEe--eccccCCCCCCCHHHHHHHHHHhc-cceEeec
Confidence 4578888888999999986 234567889999999999943 221 1234667888999988884 4999999
Q ss_pred cCCCC---HHHHHHHHH-cCCCEEEEchHHHHH
Q 019244 261 GGVRR---GTDVFKALA-LGASGIFIGRPVVYS 289 (344)
Q Consensus 261 GGIr~---g~dv~kala-lGAd~V~ig~~~l~~ 289 (344)
||.++ ..|+.+.-. .|++.||++|...+.
T Consensus 216 g~~~~~e~y~Di~~~~~~~~~~~vmiAR~A~~n 248 (477)
T KOG2334|consen 216 GGSMDIEQYSDIEDFQEKTGADSVMIARAAESN 248 (477)
T ss_pred cchhhHHhhhhHHHHHHHhccchhhhhHhhhcC
Confidence 99999 889988876 799999999976554
|
|
| >cd00452 KDPG_aldolase KDPG and KHG aldolase | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.013 Score=52.04 Aligned_cols=79 Identities=28% Similarity=0.321 Sum_probs=59.4
Q ss_pred HHHHHHHHhcC-CcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHH
Q 019244 189 KDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 267 (344)
Q Consensus 189 ~~i~~i~~~~~-~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~ 267 (344)
+.++.+++.++ +++....+.+.+.+..+.++|+|+|...+ . ..+ +.+.++.. .++++. |+.|.+
T Consensus 44 ~~i~~l~~~~~~~~iGag~v~~~~~~~~a~~~Ga~~i~~p~---~-------~~~-~~~~~~~~--~~~~i~--gv~t~~ 108 (190)
T cd00452 44 EAIRALRKEFPEALIGAGTVLTPEQADAAIAAGAQFIVSPG---L-------DPE-VVKAANRA--GIPLLP--GVATPT 108 (190)
T ss_pred HHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEEcCC---C-------CHH-HHHHHHHc--CCcEEC--CcCCHH
Confidence 46888888875 66777777889999999999999996421 1 112 22233333 567765 888999
Q ss_pred HHHHHHHcCCCEEEE
Q 019244 268 DVFKALALGASGIFI 282 (344)
Q Consensus 268 dv~kalalGAd~V~i 282 (344)
++.+++.+|||.+.+
T Consensus 109 e~~~A~~~Gad~i~~ 123 (190)
T cd00452 109 EIMQALELGADIVKL 123 (190)
T ss_pred HHHHHHHCCCCEEEE
Confidence 999999999999997
|
This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources. |
| >PRK03512 thiamine-phosphate pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.037 Score=50.06 Aligned_cols=79 Identities=18% Similarity=0.175 Sum_probs=57.9
Q ss_pred cCHHHHHHHHHcCCcEEEEccCCCCC-CC--CchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEch
Q 019244 208 LTAEDARIAVQAGAAGIIVSNHGARQ-LD--YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 284 (344)
Q Consensus 208 ~~~~~a~~~~~~G~d~I~v~~~gG~~-~~--~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~ 284 (344)
-+.+++..+.+.|+|++.++---.+. -. ..+..++.+.++.+.. .++||++-|||. ..++.+.++.||+.|.+-+
T Consensus 110 H~~~e~~~A~~~gaDYi~lgpvf~T~tK~~~~~~~G~~~l~~~~~~~-~~~PV~AiGGI~-~~ni~~l~~~Ga~GiAvis 187 (211)
T PRK03512 110 HDDMEIDVALAARPSYIALGHVFPTQTKQMPSAPQGLAQLARHVERL-ADYPTVAIGGIS-LERAPAVLATGVGSIAVVS 187 (211)
T ss_pred CCHHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhc-CCCCEEEECCCC-HHHHHHHHHcCCCEEEEhh
Confidence 56788999999999999997422221 11 1122345555555442 269999999998 8999999999999999999
Q ss_pred HHHH
Q 019244 285 PVVY 288 (344)
Q Consensus 285 ~~l~ 288 (344)
.++.
T Consensus 188 ai~~ 191 (211)
T PRK03512 188 AITQ 191 (211)
T ss_pred HhhC
Confidence 9874
|
|
| >PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.03 Score=52.68 Aligned_cols=85 Identities=18% Similarity=0.116 Sum_probs=62.3
Q ss_pred cHHHHHHHHHhcCCcEEEEeec-CHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCC
Q 019244 187 SWKDVKWLQTITKLPILVKGVL-TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 265 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v~-~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~ 265 (344)
+.+.|+++++.+++||+.|.-. ...+++.+.++|+|.|+-+..- .|.-+.+..+.... ++| +..|++|
T Consensus 62 ~p~~I~aIk~~V~iPVigk~Righ~~Ea~~L~~~GvDiID~Te~l-------rpad~~~~~~K~~f--~~~--fmad~~~ 130 (293)
T PRK04180 62 DPKMIEEIMDAVSIPVMAKARIGHFVEAQILEALGVDYIDESEVL-------TPADEEYHIDKWDF--TVP--FVCGARN 130 (293)
T ss_pred CHHHHHHHHHhCCCCeEEeehhhHHHHHHHHHHcCCCEEeccCCC-------CchHHHHHHHHHHc--CCC--EEccCCC
Confidence 3468999999999999998754 4789999999999999643210 12223344443333 444 4558999
Q ss_pred HHHHHHHHHcCCCEEEE
Q 019244 266 GTDVFKALALGASGIFI 282 (344)
Q Consensus 266 g~dv~kalalGAd~V~i 282 (344)
-++++.++.+|||.|.-
T Consensus 131 l~EAlrai~~GadmI~T 147 (293)
T PRK04180 131 LGEALRRIAEGAAMIRT 147 (293)
T ss_pred HHHHHHHHHCCCCeeec
Confidence 99999999999998864
|
|
| >PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.027 Score=56.00 Aligned_cols=96 Identities=16% Similarity=0.113 Sum_probs=64.1
Q ss_pred HHHHHhcCCcEEEEee-cCHHHHHHHHHcCCcEEEEccCCCCC---CCCchhhHHHHHHHHHHcc-------CCCcEEEe
Q 019244 192 KWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSNHGARQ---LDYVPATIMALEEVVKATQ-------GRIPVFLD 260 (344)
Q Consensus 192 ~~i~~~~~~PvivK~v-~~~~~a~~~~~~G~d~I~v~~~gG~~---~~~g~~~~~~l~~i~~~~~-------~~~~via~ 260 (344)
..+|+..+--.++... -+.+++.++.+.|+|+|.++----+. ...-+--++.|.++.+.+. ..+|+++-
T Consensus 291 ~~aR~ilg~~~iIGvStHs~eEl~~A~~~gaDYI~lGPIFpT~TK~~~~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAI 370 (437)
T PRK12290 291 ANLAQLTDAGIRLGLSTHGYYELLRIVQIQPSYIALGHIFPTTTKQMPSKPQGLVRLALYQKLIDTIPYQGQTGFPTVAI 370 (437)
T ss_pred hhhhhhcCCCCEEEEecCCHHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHHhhhccccccCCCCEEEE
Confidence 3344433322344443 46789999999999999986321111 1111223455555544432 26999999
Q ss_pred cCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 261 GGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 261 GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
||| +..++...++.||+.|.+-|.++.
T Consensus 371 GGI-~~~Ni~~vl~aGa~GVAVVSAI~~ 397 (437)
T PRK12290 371 GGI-DQSNAEQVWQCGVSSLAVVRAITL 397 (437)
T ss_pred CCc-CHHHHHHHHHcCCCEEEEehHhhc
Confidence 999 589999999999999999999874
|
|
| >cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE) | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.015 Score=51.89 Aligned_cols=76 Identities=13% Similarity=0.184 Sum_probs=50.4
Q ss_pred HHHHHHHHcCCcEEEEcc-C-CCCCCCCchhhHHHHHHHHHHcc---CCCcEEEecCCCCHHHHHHHHHcCCCEEEEchH
Q 019244 211 EDARIAVQAGAAGIIVSN-H-GARQLDYVPATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 285 (344)
Q Consensus 211 ~~a~~~~~~G~d~I~v~~-~-gG~~~~~g~~~~~~l~~i~~~~~---~~~~via~GGIr~g~dv~kalalGAd~V~ig~~ 285 (344)
+.++.. ..++|++.+.. + |++...+.....+.+.++++... .++|+++.|||+. +++.+++..|||.+.+||+
T Consensus 119 ~~~~~~-~~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~GGI~~-env~~~~~~gad~iivgsa 196 (211)
T cd00429 119 EVLEPY-LDEVDLVLVMSVNPGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVDGGINL-ETIPLLAEAGADVLVAGSA 196 (211)
T ss_pred HHHHHH-HhhCCEEEEEEECCCCCCcccCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCH-HHHHHHHHcCCCEEEECHH
Confidence 334443 44589887654 2 22222222333445555554432 2489999999995 9999999999999999999
Q ss_pred HHH
Q 019244 286 VVY 288 (344)
Q Consensus 286 ~l~ 288 (344)
++.
T Consensus 197 i~~ 199 (211)
T cd00429 197 LFG 199 (211)
T ss_pred HhC
Confidence 874
|
This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis. |
| >PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.037 Score=51.46 Aligned_cols=70 Identities=27% Similarity=0.397 Sum_probs=54.4
Q ss_pred HHHHHH-HHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 211 EDARIA-VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 211 ~~a~~~-~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
+.++.+ ...++|+|+|+|.. .+.+++.+.|.++++.++ +||++.+|+. .+.+.+.|.. ||++.+|+.|-.
T Consensus 162 ~~~~~a~~~~~aDaviVtG~~----TG~~~~~~~l~~vr~~~~--~PVlvGSGvt-~~Ni~~~l~~-ADG~IVGS~~K~ 232 (254)
T PF03437_consen 162 EAAKDAVERGGADAVIVTGKA----TGEPPDPEKLKRVREAVP--VPVLVGSGVT-PENIAEYLSY-ADGAIVGSYFKK 232 (254)
T ss_pred HHHHHHHHhcCCCEEEECCcc----cCCCCCHHHHHHHHhcCC--CCEEEecCCC-HHHHHHHHHh-CCEEEEeeeeee
Confidence 334444 57899999998742 123677888888888773 9999999987 7888888866 999999998753
|
It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions. |
| >PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.01 Score=54.82 Aligned_cols=73 Identities=18% Similarity=0.186 Sum_probs=57.3
Q ss_pred HHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHH
Q 019244 211 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 287 (344)
Q Consensus 211 ~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l 287 (344)
+.|+...+.|+|.+.+-.--+. ....+...+.+.++.+.+ .||.+.|||||-+|+.+++.+||+-|.+|+..+
T Consensus 34 ~~A~~~~~~ga~~lhivDLd~a-~~g~~~n~~~i~~i~~~~---~~v~vGGGIrs~e~~~~~l~~Ga~rvvigT~a~ 106 (241)
T PRK14114 34 ELVEKLIEEGFTLIHVVDLSKA-IENSVENLPVLEKLSEFA---EHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVL 106 (241)
T ss_pred HHHHHHHHCCCCEEEEEECCCc-ccCCcchHHHHHHHHhhc---CcEEEecCCCCHHHHHHHHHCCCCEEEECchhh
Confidence 5688888999999887532111 112345677888887765 699999999999999999999999999999765
|
|
| >TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.011 Score=54.90 Aligned_cols=69 Identities=22% Similarity=0.313 Sum_probs=54.4
Q ss_pred HHHHHHHHcC-CcEEEEccCC-CCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHH
Q 019244 211 EDARIAVQAG-AAGIIVSNHG-ARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 287 (344)
Q Consensus 211 ~~a~~~~~~G-~d~I~v~~~g-G~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l 287 (344)
+.++.+...| +|+|+|+|.+ |. +++++.|.++++.. .++|++..||+. ++.+.+++.. ||++.+|+.|=
T Consensus 161 e~a~~~~~~~~aDavivtG~~TG~-----~~d~~~l~~vr~~~-~~~PvllggGvt-~eNv~e~l~~-adGviVgS~~K 231 (257)
T TIGR00259 161 SIALDTVERGLADAVILSGKTTGT-----EVDLELLKLAKETV-KDTPVLAGSGVN-LENVEELLSI-ADGVIVATTIK 231 (257)
T ss_pred HHHHHHHHhcCCCEEEECcCCCCC-----CCCHHHHHHHHhcc-CCCeEEEECCCC-HHHHHHHHhh-CCEEEECCCcc
Confidence 4577767666 9999999854 32 45677788777644 368999999997 8999999987 99999999874
|
Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis. |
| >PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.29 Score=46.25 Aligned_cols=107 Identities=14% Similarity=0.235 Sum_probs=74.0
Q ss_pred cCHHHHHHHH-HcCCcEEEEcc---CCCCCCCCchh-hHHHHHHHHHHccCCCcEEEecCCCCH-HHHHHHHHcCCCEEE
Q 019244 208 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGIF 281 (344)
Q Consensus 208 ~~~~~a~~~~-~~G~d~I~v~~---~gG~~~~~g~~-~~~~l~~i~~~~~~~~~via~GGIr~g-~dv~kalalGAd~V~ 281 (344)
.+|+++.+.. +.|+|.+-++. ||-+ .+|. .++.|.+|.+.+ ++|+..-||=..+ +++.+++.+|+.-|-
T Consensus 153 T~pe~a~~Fv~~TgvD~LAvaiGt~HG~Y---~~p~l~~~~l~~I~~~~--~vPLVlHGgSG~~~e~~~~ai~~Gi~KiN 227 (283)
T PRK07998 153 TEPEKVKDFVERTGCDMLAVSIGNVHGLE---DIPRIDIPLLKRIAEVS--PVPLVIHGGSGIPPEILRSFVNYKVAKVN 227 (283)
T ss_pred CCHHHHHHHHHHhCcCeeehhccccccCC---CCCCcCHHHHHHHHhhC--CCCEEEeCCCCCCHHHHHHHHHcCCcEEE
Confidence 4678876644 78999999874 5432 2322 367899998877 7999998877776 667789999999999
Q ss_pred EchHHHHHhhh-------cC---h---HHHHHHHHHHHHHHHHHHHHhCCC
Q 019244 282 IGRPVVYSLAA-------EG---E---KGVRRVLEMLREEFELAMALSGCR 319 (344)
Q Consensus 282 ig~~~l~~~~~-------~G---~---~~v~~~l~~l~~el~~~m~~~G~~ 319 (344)
++|-+..+... .. . .-.....+.+++..+..|..+|+.
T Consensus 228 i~Tel~~a~~~~~~~~l~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 278 (283)
T PRK07998 228 IASDLRKAFITTVGKAYVNNHNEANLARVMAKAKQAVEEDVYSKIKMMNSN 278 (283)
T ss_pred ECHHHHHHHHHHHHHHHHhCcCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99987554210 00 0 112333456777778888888764
|
|
| >PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.013 Score=52.50 Aligned_cols=81 Identities=16% Similarity=0.161 Sum_probs=58.7
Q ss_pred cHHHHHHHHHhcC-CcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCC
Q 019244 187 SWKDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 265 (344)
Q Consensus 187 ~~~~i~~i~~~~~-~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~ 265 (344)
..+.|+.+++.++ +-|.+..|++.++++.+.++|+++|+--+ -..+.+..+.+ . ++| ..=|+.|
T Consensus 42 a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~FivSP~----------~~~~vi~~a~~-~--~i~--~iPG~~T 106 (201)
T PRK06015 42 ALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFIVSPG----------TTQELLAAAND-S--DVP--LLPGAAT 106 (201)
T ss_pred HHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEEECCC----------CCHHHHHHHHH-c--CCC--EeCCCCC
Confidence 3456888888773 66777778999999999999999995421 12233333322 1 344 4458999
Q ss_pred HHHHHHHHHcCCCEEEE
Q 019244 266 GTDVFKALALGASGIFI 282 (344)
Q Consensus 266 g~dv~kalalGAd~V~i 282 (344)
+.++..|+.+||+.|=+
T Consensus 107 ptEi~~A~~~Ga~~vK~ 123 (201)
T PRK06015 107 PSEVMALREEGYTVLKF 123 (201)
T ss_pred HHHHHHHHHCCCCEEEE
Confidence 99999999999998854
|
|
| >PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4 | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.014 Score=52.25 Aligned_cols=81 Identities=28% Similarity=0.298 Sum_probs=56.7
Q ss_pred cHHHHHHHHHhc-CCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCC
Q 019244 187 SWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 265 (344)
Q Consensus 187 ~~~~i~~i~~~~-~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~ 265 (344)
..+.|+.+++++ ++-|.+..|++.++++.+.++|+++++--+ -+.+.+..+.+. ++|++ =|+.|
T Consensus 46 a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA~FivSP~----------~~~~v~~~~~~~---~i~~i--PG~~T 110 (196)
T PF01081_consen 46 ALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGAQFIVSPG----------FDPEVIEYAREY---GIPYI--PGVMT 110 (196)
T ss_dssp HHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT-SEEEESS------------HHHHHHHHHH---TSEEE--EEESS
T ss_pred HHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCCCEEECCC----------CCHHHHHHHHHc---CCccc--CCcCC
Confidence 456788898887 466777778999999999999999996521 122344443332 45555 47999
Q ss_pred HHHHHHHHHcCCCEEEE
Q 019244 266 GTDVFKALALGASGIFI 282 (344)
Q Consensus 266 g~dv~kalalGAd~V~i 282 (344)
+.++.+|+.+||+.|=+
T Consensus 111 ptEi~~A~~~G~~~vK~ 127 (196)
T PF01081_consen 111 PTEIMQALEAGADIVKL 127 (196)
T ss_dssp HHHHHHHHHTT-SEEEE
T ss_pred HHHHHHHHHCCCCEEEE
Confidence 99999999999999865
|
1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A .... |
| >TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.011 Score=53.14 Aligned_cols=66 Identities=23% Similarity=0.328 Sum_probs=51.5
Q ss_pred HHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 019244 213 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 283 (344)
Q Consensus 213 a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig 283 (344)
+..+...|++.|.+-..-|. .-+.+.+.+.++++.+ ++|++..||||+.+++.+++..|||.|.+|
T Consensus 140 a~aa~~~G~~~i~Le~~sGa---~~~v~~e~i~~Vk~~~--~~Pv~vGGGIrs~e~a~~l~~~GAD~VVVG 205 (205)
T TIGR01769 140 CLAAKYFGMKWVYLEAGSGA---SYPVNPETISLVKKAS--GIPLIVGGGIRSPEIAYEIVLAGADAIVTG 205 (205)
T ss_pred HHHHHHcCCCEEEEEcCCCC---CCCCCHHHHHHHHHhh--CCCEEEeCCCCCHHHHHHHHHcCCCEEEeC
Confidence 45677889999988543232 1123467777887776 799999999999999999989999999886
|
This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum. |
| >cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.026 Score=54.45 Aligned_cols=67 Identities=22% Similarity=0.311 Sum_probs=51.8
Q ss_pred HHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 019244 211 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 283 (344)
Q Consensus 211 ~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig 283 (344)
+.++.+.++|++.|.++.+.|.. ....+.+.++++..+ +++|++ |.+.+..++.+++.+|||++.++
T Consensus 97 ~~~~~l~eagv~~I~vd~~~G~~----~~~~~~i~~ik~~~p-~v~Vi~-G~v~t~~~A~~l~~aGaD~I~vg 163 (325)
T cd00381 97 ERAEALVEAGVDVIVIDSAHGHS----VYVIEMIKFIKKKYP-NVDVIA-GNVVTAEAARDLIDAGADGVKVG 163 (325)
T ss_pred HHHHHHHhcCCCEEEEECCCCCc----HHHHHHHHHHHHHCC-CceEEE-CCCCCHHHHHHHHhcCCCEEEEC
Confidence 55788999999999997543321 234566777776543 588887 99999999999999999999873
|
IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents. |
| >PRK05581 ribulose-phosphate 3-epimerase; Validated | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.028 Score=50.66 Aligned_cols=97 Identities=14% Similarity=0.169 Sum_probs=57.3
Q ss_pred HHHHHHHhcCCcEEEEee-cCHHHHHHHHHcCCcEEEEccC--CCCCCCCchhhHHHHHHHHHHccC---CCcEEEecCC
Q 019244 190 DVKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQG---RIPVFLDGGV 263 (344)
Q Consensus 190 ~i~~i~~~~~~PvivK~v-~~~~~a~~~~~~G~d~I~v~~~--gG~~~~~g~~~~~~l~~i~~~~~~---~~~via~GGI 263 (344)
.++.+++. ++.+++-.. .+..+..+....++|+|.+... |++...+.....+.+.++++.... ..+|.++|||
T Consensus 101 ~~~~~~~~-~~~~g~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI 179 (220)
T PRK05581 101 LLQLIKSA-GIKAGLVLNPATPLEPLEDVLDLLDLVLLMSVNPGFGGQKFIPEVLEKIRELRKLIDERGLDILIEVDGGI 179 (220)
T ss_pred HHHHHHHc-CCEEEEEECCCCCHHHHHHHHhhCCEEEEEEECCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCC
Confidence 45555553 554444322 2333433444456898877542 322222222334445555544321 1446789999
Q ss_pred CCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 264 RRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 264 r~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
+. +++.+++..|||.|.+||.++.
T Consensus 180 ~~-~nv~~l~~~GaD~vvvgSai~~ 203 (220)
T PRK05581 180 NA-DNIKECAEAGADVFVAGSAVFG 203 (220)
T ss_pred CH-HHHHHHHHcCCCEEEEChhhhC
Confidence 98 7999999999999999999874
|
|
| >KOG2333 consensus Uncharacterized conserved protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.016 Score=57.58 Aligned_cols=99 Identities=19% Similarity=0.305 Sum_probs=72.7
Q ss_pred HHHHHHhc-CCcEEEEeecC--------HHHHHHHH-HcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEe
Q 019244 191 VKWLQTIT-KLPILVKGVLT--------AEDARIAV-QAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD 260 (344)
Q Consensus 191 i~~i~~~~-~~PvivK~v~~--------~~~a~~~~-~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~ 260 (344)
++.....+ .+|+-||+... .+-...+. +-|+++|++.|....|...-...++.+.++++.+...+|+|+.
T Consensus 381 l~~m~~vs~~iPiTVKiRTG~keg~~~a~~Li~~i~newg~savTlHGRSRqQRYTK~AnWdYi~e~a~~ak~~l~liGN 460 (614)
T KOG2333|consen 381 LRAMNAVSGDIPITVKIRTGTKEGHPVAHELIPRIVNEWGASAVTLHGRSRQQRYTKSANWDYIEECADKAKSALPLIGN 460 (614)
T ss_pred HHHHHHhccCCCeEEEEecccccCchhHHHHHHHHhhccCcceEEecCchhhhhhhcccChHHHHHHHHhcccCceeEec
Confidence 44444444 47999998621 23344455 8999999994332223444456789999999888766999999
Q ss_pred cCCCCHHHHHHHHHcC--CCEEEEch-----HHHHH
Q 019244 261 GGVRRGTDVFKALALG--ASGIFIGR-----PVVYS 289 (344)
Q Consensus 261 GGIr~g~dv~kalalG--Ad~V~ig~-----~~l~~ 289 (344)
|.|-|-+|=.+.+..+ .+.|||+| ||+|.
T Consensus 461 GDi~S~eDw~~~~~~~p~v~svMIaRGALIKPWIFt 496 (614)
T KOG2333|consen 461 GDILSWEDWYERLNQNPNVDSVMIARGALIKPWIFT 496 (614)
T ss_pred CccccHHHHHHHhhcCCCcceEEeeccccccchHhh
Confidence 9999999999999877 89999999 56653
|
|
| >TIGR02134 transald_staph transaldolase | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.062 Score=49.41 Aligned_cols=100 Identities=14% Similarity=0.116 Sum_probs=74.2
Q ss_pred HHHHHHHHHhcCCcEEEEeecCHHHHHHH---HHcC-CcEEEEccCCCCCCCCchhhHHHHHHHHHHcc--CCCcEEEec
Q 019244 188 WKDVKWLQTITKLPILVKGVLTAEDARIA---VQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQ--GRIPVFLDG 261 (344)
Q Consensus 188 ~~~i~~i~~~~~~PvivK~v~~~~~a~~~---~~~G-~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~--~~~~via~G 261 (344)
++.++.+++. ++++-+=.+.|+..+..+ ..+| +++|.. .-||-.|.|......+.++++.+. .+..|++.+
T Consensus 102 l~ai~~L~~~-GI~vn~T~vfs~~Qa~~aa~A~~aG~a~yisp--fvgR~dd~g~D~~~~i~~i~~i~~~~~~tkILaAS 178 (236)
T TIGR02134 102 GPLIQKLSAD-GITLNVTALTTIEQVEKVCQSFTDGVPGIVSV--FAGRIADTGVDPEPHMREALEIVAQKPGVELLWAS 178 (236)
T ss_pred HHHHHHHHHC-CCcEEeehcCCHHHHHHHHHHHhCCCCeEEEE--ecchhhhcCCCcHHHHHHHHHHHHhCCCcEEEEEc
Confidence 5567777665 889888888999998864 4589 587765 446654555555555555554432 367788866
Q ss_pred CCCCHHHHHHHHHcCCCEEEEchHHHHHhh
Q 019244 262 GVRRGTDVFKALALGASGIFIGRPVVYSLA 291 (344)
Q Consensus 262 GIr~g~dv~kalalGAd~V~ig~~~l~~~~ 291 (344)
+|+..++.++..+|||.+-+.-.++..+.
T Consensus 179 -~R~~~~v~~a~~~Gad~vTvp~~v~~~l~ 207 (236)
T TIGR02134 179 -PRELFNIIQADRIGCDIITCAHDILAKLP 207 (236)
T ss_pred -cCCHHHHHHHHHcCCCEEECCHHHHHHHH
Confidence 99999999999999999999988887764
|
This small family of proteins is a member of the transaldolase sybfamily represented by pfam00923. Coxiella and Staphylococcus lack members of the known transaldolase equivalog families and appear to require a transaldolase activity for completion of the pentose phosphate pathway. |
| >COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.05 Score=49.03 Aligned_cols=113 Identities=18% Similarity=0.205 Sum_probs=74.6
Q ss_pred HHHHHHHHhcCCcEEEEee--cCHHHH-HHHHHcCCcEEEEccCCCCCCC-Cch-hhHHHHHHHHHHccCCCcEEEecCC
Q 019244 189 KDVKWLQTITKLPILVKGV--LTAEDA-RIAVQAGAAGIIVSNHGARQLD-YVP-ATIMALEEVVKATQGRIPVFLDGGV 263 (344)
Q Consensus 189 ~~i~~i~~~~~~PvivK~v--~~~~~a-~~~~~~G~d~I~v~~~gG~~~~-~g~-~~~~~l~~i~~~~~~~~~via~GGI 263 (344)
+..-+..+.+++-+.+=++ .++++. +++.++|+|.+.+ |-|+... .|. +.++.|.++.+.......|-..|||
T Consensus 96 ~~~i~~A~~~~~~v~iDl~~~~~~~~~~~~l~~~gvd~~~~--H~g~D~q~~G~~~~~~~l~~ik~~~~~g~~vAVaGGI 173 (217)
T COG0269 96 KKAIKVAKEYGKEVQIDLIGVWDPEQRAKWLKELGVDQVIL--HRGRDAQAAGKSWGEDDLEKIKKLSDLGAKVAVAGGI 173 (217)
T ss_pred HHHHHHHHHcCCeEEEEeecCCCHHHHHHHHHHhCCCEEEE--EecccHhhcCCCccHHHHHHHHHhhccCceEEEecCC
Confidence 3333333445777776665 456664 5555699999998 5554211 222 3366677776665434789999999
Q ss_pred CCHHHHHHHHHcCCCEEEEchHHHHHhhhcChHHHHHHHHHHHHHHH
Q 019244 264 RRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFE 310 (344)
Q Consensus 264 r~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~el~ 310 (344)
. ++++-.+...|++.|.+||.+-. ...+.+..+.+++++.
T Consensus 174 ~-~~~i~~~~~~~~~ivIvGraIt~------a~dp~~~a~~~~~~i~ 213 (217)
T COG0269 174 T-PEDIPLFKGIGADIVIVGRAITG------AKDPAEAARKFKEEID 213 (217)
T ss_pred C-HHHHHHHhcCCCCEEEECchhcC------CCCHHHHHHHHHHHHh
Confidence 7 89999999999999999998853 3333445555665553
|
|
| >TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.016 Score=52.78 Aligned_cols=66 Identities=21% Similarity=0.262 Sum_probs=51.1
Q ss_pred cCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 219 AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 219 ~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
.|...|.+--.||. ..+-..+.+..+++.+. ++||+..|||||.+++.+++.+|||.|.+|+.+..
T Consensus 148 ~g~~~vYlE~gs~~---g~~v~~e~i~~v~~~~~-~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs~~~~ 213 (223)
T TIGR01768 148 LGMPIIYLEAGSGA---PEPVPPELVAEVKKVLD-KARLFVGGGIRSVEKAREMAEAGADTIVTGNVIEE 213 (223)
T ss_pred cCCcEEEEEecCCC---CCCcCHHHHHHHHHHcC-CCCEEEecCCCCHHHHHHHHHcCCCEEEECcHHhh
Confidence 57787777543433 22334566777777653 69999999999999999999999999999998865
|
This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired. |
| >cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.058 Score=50.56 Aligned_cols=113 Identities=15% Similarity=0.089 Sum_probs=74.0
Q ss_pred cHHHHHHHHHhcCCcEEEEeec-CHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCC
Q 019244 187 SWKDVKWLQTITKLPILVKGVL-TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 265 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v~-~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~ 265 (344)
+.++|++|++.+++|||-+.-. ...+++.+.++|+|.|..+..- .|.-+.+..++... ++ .+..+++|
T Consensus 53 ~~~~I~~Ik~~V~iPVIGi~K~~~~~Ea~~L~eaGvDiIDaT~r~-------rP~~~~~~~iK~~~--~~--l~MAD~st 121 (283)
T cd04727 53 DPKMIKEIMDAVSIPVMAKVRIGHFVEAQILEALGVDMIDESEVL-------TPADEEHHIDKHKF--KV--PFVCGARN 121 (283)
T ss_pred CHHHHHHHHHhCCCCeEEeeehhHHHHHHHHHHcCCCEEeccCCC-------CcHHHHHHHHHHHc--CC--cEEccCCC
Confidence 4578999999999999876543 3789999999999999643211 12334455554432 44 44557999
Q ss_pred HHHHHHHHHcCCCEEEEchHHHHHhhhcCh-HHHHHHHHHHHHHHHHHHHH
Q 019244 266 GTDVFKALALGASGIFIGRPVVYSLAAEGE-KGVRRVLEMLREEFELAMAL 315 (344)
Q Consensus 266 g~dv~kalalGAd~V~ig~~~l~~~~~~G~-~~v~~~l~~l~~el~~~m~~ 315 (344)
-+++..+..+|||.|.-- +. + ..|. ....+.+..+..|++....+
T Consensus 122 leEal~a~~~Gad~I~TT--l~-g--yT~~~~~~~~~~~~i~~~i~~~~gy 167 (283)
T cd04727 122 LGEALRRISEGAAMIRTK--GE-A--GTGNVVEAVRHMRAVNGEIRKLQSM 167 (283)
T ss_pred HHHHHHHHHCCCCEEEec--CC-C--CCCcHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999987533 21 1 1121 11224456677777754444
|
Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings. |
| >PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.27 Score=45.61 Aligned_cols=97 Identities=29% Similarity=0.368 Sum_probs=61.8
Q ss_pred cHHHHHHHHHhcCCcEEEEee--cCHHH----HHHHHHcCCcEEEEccCCCCCCCCc---hhhHHHHHHHHHHccCCCcE
Q 019244 187 SWKDVKWLQTITKLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYV---PATIMALEEVVKATQGRIPV 257 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v--~~~~~----a~~~~~~G~d~I~v~~~gG~~~~~g---~~~~~~l~~i~~~~~~~~~v 257 (344)
+++.++.+.+ +++||++|-- .++++ ++.+.+.|..-|.+.-.|=+....- ...+.+++.+++.. .+||
T Consensus 111 n~~LL~~va~-tgkPVilk~G~~~t~~e~~~A~e~i~~~Gn~~i~L~eRg~~~Y~~~~~n~~dl~ai~~lk~~~--~lPV 187 (250)
T PRK13397 111 NFEFLKTLSH-IDKPILFKRGLMATIEEYLGALSYLQDTGKSNIILCERGVRGYDVETRNMLDIMAVPIIQQKT--DLPI 187 (250)
T ss_pred CHHHHHHHHc-cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEccccCCCCCccccccCHHHHHHHHHHh--CCCe
Confidence 4556777766 5999999976 46665 4566778886666643232222211 23455666666544 6899
Q ss_pred EEe----cCCCC--HHHHHHHHHcCCCEEEEchHH
Q 019244 258 FLD----GGVRR--GTDVFKALALGASGIFIGRPV 286 (344)
Q Consensus 258 ia~----GGIr~--g~dv~kalalGAd~V~ig~~~ 286 (344)
+++ +|.|. ..-...|+++|||.+++-+.+
T Consensus 188 ivd~SHs~G~r~~v~~~a~AAvA~GAdGl~IE~H~ 222 (250)
T PRK13397 188 IVDVSHSTGRRDLLLPAAKIAKAVGANGIMMEVHP 222 (250)
T ss_pred EECCCCCCcccchHHHHHHHHHHhCCCEEEEEecC
Confidence 996 44433 123557888999999998755
|
|
| >TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.017 Score=53.48 Aligned_cols=73 Identities=29% Similarity=0.202 Sum_probs=56.0
Q ss_pred HHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHH
Q 019244 211 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 287 (344)
Q Consensus 211 ~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l 287 (344)
+.++...+.|+..+.+.---+. .+.+...+.+.++.+.+ .+|+.+.|||||.+|+.+++.+||+-|.+|+..+
T Consensus 35 ~~a~~~~~~g~~~lhivDLd~a--~g~~~n~~~i~~i~~~~--~~~v~vgGGIrs~e~~~~~l~~Ga~~vvigT~a~ 107 (243)
T TIGR01919 35 SAAKWWEQGGAEWIHLVDLDAA--FGGGNNEMMLEEVVKLL--VVVEELSGGRRDDSSLRAALTGGRARVNGGTAAL 107 (243)
T ss_pred HHHHHHHhCCCeEEEEEECCCC--CCCcchHHHHHHHHHHC--CCCEEEcCCCCCHHHHHHHHHcCCCEEEECchhh
Confidence 3445567788888777532111 12345677888888776 5899999999999999999999999999999765
|
This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent. |
| >PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.037 Score=54.63 Aligned_cols=93 Identities=20% Similarity=0.221 Sum_probs=60.2
Q ss_pred HHHHHHhcCCcEEEEee--cCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHH
Q 019244 191 VKWLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 268 (344)
Q Consensus 191 i~~i~~~~~~PvivK~v--~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~d 268 (344)
++.+++ .++-+++-.. .++.+.......++|.|.+.. +.......+.+..+.++++. ..+++|.++|||. .++
T Consensus 269 i~~akk-~GikvgVD~lnp~tp~e~i~~l~~~vD~Vllht--~vdp~~~~~~~~kI~~ikk~-~~~~~I~VdGGI~-~et 343 (391)
T PRK13307 269 IHEAQK-TGIYSILDMLNVEDPVKLLESLKVKPDVVELHR--GIDEEGTEHAWGNIKEIKKA-GGKILVAVAGGVR-VEN 343 (391)
T ss_pred HHHHHH-cCCEEEEEEcCCCCHHHHHHHhhCCCCEEEEcc--ccCCCcccchHHHHHHHHHh-CCCCcEEEECCcC-HHH
Confidence 444444 3555554322 344443333388999998853 11111223455666666654 3478999999999 788
Q ss_pred HHHHHHcCCCEEEEchHHHH
Q 019244 269 VFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 269 v~kalalGAd~V~ig~~~l~ 288 (344)
+-+++.+|||.+.+||.++.
T Consensus 344 i~~l~~aGADivVVGsaIf~ 363 (391)
T PRK13307 344 VEEALKAGADILVVGRAITK 363 (391)
T ss_pred HHHHHHcCCCEEEEeHHHhC
Confidence 88999999999999999653
|
|
| >PRK07315 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.099 Score=49.72 Aligned_cols=79 Identities=23% Similarity=0.400 Sum_probs=62.2
Q ss_pred cCHHHHHHHHHcCCcEEEEc--c-CCCCCCCCchhhHHHHHHHHHHccCCCcEEEecC--CCCHHHHHHHHHcCCCEEEE
Q 019244 208 LTAEDARIAVQAGAAGIIVS--N-HGARQLDYVPATIMALEEVVKATQGRIPVFLDGG--VRRGTDVFKALALGASGIFI 282 (344)
Q Consensus 208 ~~~~~a~~~~~~G~d~I~v~--~-~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GG--Ir~g~dv~kalalGAd~V~i 282 (344)
.++++|+.+.+.|+|++-++ + ||-+.-..-.-.++.|.++++.+. ++|+++=|| |. .+++.+++..|++-|-+
T Consensus 154 t~peea~~f~~tgvD~LAv~iG~vHG~y~t~~k~l~~e~L~~i~~~~~-~iPlVlhGGSGi~-~e~~~~~i~~Gi~KiNv 231 (293)
T PRK07315 154 APIEDAKAMVETGIDFLAAGIGNIHGPYPENWEGLDLDHLEKLTEAVP-GFPIVLHGGSGIP-DDQIQEAIKLGVAKVNV 231 (293)
T ss_pred CCHHHHHHHHHcCCCEEeeccccccccCCCCCCcCCHHHHHHHHHhcc-CCCEEEECCCCCC-HHHHHHHHHcCCCEEEE
Confidence 57899999999999999998 3 553311111235678899988762 499999998 86 68899999999999999
Q ss_pred chHHHH
Q 019244 283 GRPVVY 288 (344)
Q Consensus 283 g~~~l~ 288 (344)
++.+..
T Consensus 232 ~T~i~~ 237 (293)
T PRK07315 232 NTECQI 237 (293)
T ss_pred ccHHHH
Confidence 998864
|
|
| >PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating) | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.047 Score=52.01 Aligned_cols=93 Identities=18% Similarity=0.166 Sum_probs=67.9
Q ss_pred HHHHHHHhcC-----CcEEEEeecCHHHHHHHHH------cCCcEEEEccC--CCCCCCCchhhHHHHHHHHHHccCCCc
Q 019244 190 DVKWLQTITK-----LPILVKGVLTAEDARIAVQ------AGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIP 256 (344)
Q Consensus 190 ~i~~i~~~~~-----~PvivK~v~~~~~a~~~~~------~G~d~I~v~~~--gG~~~~~g~~~~~~l~~i~~~~~~~~~ 256 (344)
.++.+++..+ .+| .=++.|.++++.+.+ +|+|.|-++|. ..... ..+.+.+.++.+.++++.+
T Consensus 189 av~~~r~~~~~~~~~~kI-eVEv~tleea~ea~~~~~~~~agaDiImLDnm~~~~~~~---~~~~e~l~~av~~~~~~~~ 264 (308)
T PLN02716 189 AVQSADKYLEEKGLSMKI-EVETRTLEEVKEVLEYLSDTKTSLTRVMLDNMVVPLENG---DVDVSMLKEAVELINGRFE 264 (308)
T ss_pred HHHHHHHhhhhcCCCeeE-EEEECCHHHHHHHHHhcccccCCCCEEEeCCCccccccc---CCCHHHHHHHHHhhCCCce
Confidence 4666666321 233 335689999999999 99999999885 21111 1245666666666666789
Q ss_pred EEEecCCCCHHHHHHHHHcCCCEEEEchHHH
Q 019244 257 VFLDGGVRRGTDVFKALALGASGIFIGRPVV 287 (344)
Q Consensus 257 via~GGIr~g~dv~kalalGAd~V~ig~~~l 287 (344)
+-+||||. ...+.++...|+|.+.+|.+..
T Consensus 265 lEaSGGIt-~~ni~~yA~tGVD~Is~Galth 294 (308)
T PLN02716 265 TEASGNVT-LDTVHKIGQTGVTYISSGALTH 294 (308)
T ss_pred EEEECCCC-HHHHHHHHHcCCCEEEeCcccc
Confidence 99999997 7888888889999999997654
|
|
| >TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1 | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.026 Score=52.89 Aligned_cols=85 Identities=18% Similarity=0.074 Sum_probs=62.5
Q ss_pred cHHHHHHHHHhcCCcEEEEee-cCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCC
Q 019244 187 SWKDVKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 265 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v-~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~ 265 (344)
+.++|++|++.+++||+-|.- ....+++.+.++|+|.|+-+..- .|.-+.+..+.... ++ .+..|++|
T Consensus 55 ~p~~I~~I~~~V~iPVig~~kigh~~Ea~~L~~~GvDiIDeTe~l-------rPade~~~~~K~~f--~v--pfmad~~~ 123 (287)
T TIGR00343 55 DPKMIKEIMDAVSIPVMAKVRIGHFVEAQILEALGVDYIDESEVL-------TPADWTFHIDKKKF--KV--PFVCGARD 123 (287)
T ss_pred CHHHHHHHHHhCCCCEEEEeeccHHHHHHHHHHcCCCEEEccCCC-------CcHHHHHHHHHHHc--CC--CEEccCCC
Confidence 457899999999999998865 45789999999999999643211 12233344443322 44 44568999
Q ss_pred HHHHHHHHHcCCCEEEE
Q 019244 266 GTDVFKALALGASGIFI 282 (344)
Q Consensus 266 g~dv~kalalGAd~V~i 282 (344)
-++++.++.+|||.|.-
T Consensus 124 l~EAlrai~~GadmI~T 140 (287)
T TIGR00343 124 LGEALRRINEGAAMIRT 140 (287)
T ss_pred HHHHHHHHHCCCCEEec
Confidence 99999999999998753
|
This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals. |
| >PRK08999 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.016 Score=55.21 Aligned_cols=76 Identities=22% Similarity=0.229 Sum_probs=56.8
Q ss_pred cCHHHHHHHHHcCCcEEEEccCCCCCC--CCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchH
Q 019244 208 LTAEDARIAVQAGAAGIIVSNHGARQL--DYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 285 (344)
Q Consensus 208 ~~~~~a~~~~~~G~d~I~v~~~gG~~~--~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~ 285 (344)
-+.+++..+.+.|+|+|.++--.-+.- +.-+..++.+.++.+.. ++||+|-||| +..++...+++||+.|.+-+.
T Consensus 234 h~~~~~~~a~~~~~dyi~~gpvf~t~tk~~~~~~g~~~~~~~~~~~--~~Pv~AiGGI-~~~~~~~~~~~g~~gva~i~~ 310 (312)
T PRK08999 234 HDAEELARAQRLGVDFAVLSPVQPTASHPGAAPLGWEGFAALIAGV--PLPVYALGGL-GPGDLEEAREHGAQGIAGIRG 310 (312)
T ss_pred CCHHHHHHHHhcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhC--CCCEEEECCC-CHHHHHHHHHhCCCEEEEEEE
Confidence 578889999999999999874322211 11122356677776655 7999999999 899999999999999988765
Q ss_pred H
Q 019244 286 V 286 (344)
Q Consensus 286 ~ 286 (344)
+
T Consensus 311 ~ 311 (312)
T PRK08999 311 L 311 (312)
T ss_pred e
Confidence 4
|
|
| >PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.061 Score=48.84 Aligned_cols=117 Identities=19% Similarity=0.141 Sum_probs=67.8
Q ss_pred HHHHHHHHHhc-CCcEEE--EeecCHH-HHHHHHHcCCcEEEEccCCCCC-----------------------C------
Q 019244 188 WKDVKWLQTIT-KLPILV--KGVLTAE-DARIAVQAGAAGIIVSNHGARQ-----------------------L------ 234 (344)
Q Consensus 188 ~~~i~~i~~~~-~~Pviv--K~v~~~~-~a~~~~~~G~d~I~v~~~gG~~-----------------------~------ 234 (344)
.+.++++++.. +.||.+ |.-.-+. .+..+.++|+|.++|.+.+|.. .
T Consensus 44 ~~~i~~lk~~~~~~~v~~DLK~~Di~~~v~~~~~~~Gad~vTvH~~a~~~~i~~~~~~~~~~g~~~~V~llts~~~~~l~ 123 (216)
T PRK13306 44 MKAVRVLRALYPDKIIVADTKIADAGKILAKMAFEAGADWVTVICAAHIPTIKAALKVAKEFNGEIQIELYGNWTWEQAQ 123 (216)
T ss_pred HHHHHHHHHHCCCCEEEEEEeecCCcHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHHHHcCCEEEEEECCCCCHHHHH
Confidence 35688888874 677765 4332222 2335889999999997644421 0
Q ss_pred --------------------CCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcC
Q 019244 235 --------------------DYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEG 294 (344)
Q Consensus 235 --------------------~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G 294 (344)
++..-..+.+..+++..+.+..+.++|||+-. .+-+....|||.+.+|||+..+
T Consensus 124 ~~~~~~~~~~vl~~a~~~~~~G~v~s~~~~~~ir~~~~~~~~i~V~gGI~~~-~~~~~~~~~ad~~VvGr~I~~a----- 197 (216)
T PRK13306 124 QWRDAGISQVIYHRSRDAQLAGVAWGEKDLNKVKKLSDMGFKVSVTGGLVVE-DLKLFKGIPVKTFIAGRAIRGA----- 197 (216)
T ss_pred HHHcCChhhhhhhhhhhhhhcCCCCCHHHHHHHHHHhcCCCeEEEcCCCCHh-hHHHHhcCCCCEEEECCcccCC-----
Confidence 00000112333444443334568999999942 2223344599999999996542
Q ss_pred hHHHHHHHHHHHHHHHH
Q 019244 295 EKGVRRVLEMLREEFEL 311 (344)
Q Consensus 295 ~~~v~~~l~~l~~el~~ 311 (344)
+.....++.++++++.
T Consensus 198 -~dp~~a~~~i~~~i~~ 213 (216)
T PRK13306 198 -ADPAAAARAFKDEIAK 213 (216)
T ss_pred -CCHHHHHHHHHHHHHh
Confidence 2234456666666643
|
|
| >PRK06843 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.018 Score=56.91 Aligned_cols=67 Identities=12% Similarity=0.247 Sum_probs=52.2
Q ss_pred HHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 019244 211 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 283 (344)
Q Consensus 211 ~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig 283 (344)
+.+..+.++|+|.|+++...|. +....+.+.++++..+ +++| ..|+|.|.+++.+++.+|||+|.+|
T Consensus 156 ~~v~~lv~aGvDvI~iD~a~g~----~~~~~~~v~~ik~~~p-~~~v-i~g~V~T~e~a~~l~~aGaD~I~vG 222 (404)
T PRK06843 156 ERVEELVKAHVDILVIDSAHGH----STRIIELVKKIKTKYP-NLDL-IAGNIVTKEAALDLISVGADCLKVG 222 (404)
T ss_pred HHHHHHHhcCCCEEEEECCCCC----ChhHHHHHHHHHhhCC-CCcE-EEEecCCHHHHHHHHHcCCCEEEEC
Confidence 6789999999999998764332 2345567778877653 4554 4588999999999999999999876
|
|
| >PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.022 Score=53.10 Aligned_cols=71 Identities=27% Similarity=0.219 Sum_probs=57.0
Q ss_pred HHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 210 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
.+.|+...+.|++.+.|---+| ..+...+.+.++++ + .+||-.-||||+ +++.+++.+||+-|.+|+..+.
T Consensus 46 ~~~A~~~~~~Ga~~lHvVDLdg----g~~~n~~~i~~i~~-~--~~~vqvGGGIR~-e~i~~~l~~Ga~rViigT~Av~ 116 (262)
T PLN02446 46 AEFAEMYKRDGLTGGHVIMLGA----DDASLAAALEALRA-Y--PGGLQVGGGVNS-ENAMSYLDAGASHVIVTSYVFR 116 (262)
T ss_pred HHHHHHHHHCCCCEEEEEECCC----CCcccHHHHHHHHh-C--CCCEEEeCCccH-HHHHHHHHcCCCEEEEchHHHh
Confidence 4678899999999887754222 12345677888877 5 599999999997 9999999999999999998764
|
|
| >KOG4201 consensus Anthranilate synthase component II [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.052 Score=48.76 Aligned_cols=97 Identities=18% Similarity=0.235 Sum_probs=70.2
Q ss_pred HHHHHHHHHhcCC-cEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCH
Q 019244 188 WKDVKWLQTITKL-PILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 266 (344)
Q Consensus 188 ~~~i~~i~~~~~~-PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g 266 (344)
++.+-.+.+..++ |++ ++.+.++..++++.|+..|-|-|..=+.+..-.++..-|.+ .++.++-+++-+||.|+
T Consensus 175 lk~l~k~~K~L~me~LV--EVn~~eEm~raleiGakvvGvNNRnL~sFeVDlstTskL~E---~i~kDvilva~SGi~tp 249 (289)
T KOG4201|consen 175 LKELYKISKDLGMEPLV--EVNDEEEMQRALEIGAKVVGVNNRNLHSFEVDLSTTSKLLE---GIPKDVILVALSGIFTP 249 (289)
T ss_pred HHHHHHHHHHcCCccee--eeccHHHHHHHHHhCcEEEeecCCccceeeechhhHHHHHh---hCccceEEEeccCCCCH
Confidence 3445555665554 433 46788999999999999998877543333333333333333 34557889999999999
Q ss_pred HHHHHHHHcCCCEEEEchHHHHH
Q 019244 267 TDVFKALALGASGIFIGRPVVYS 289 (344)
Q Consensus 267 ~dv~kalalGAd~V~ig~~~l~~ 289 (344)
.|++++-..|..+|.+|-.++..
T Consensus 250 dDia~~q~~GV~avLVGEslmk~ 272 (289)
T KOG4201|consen 250 DDIAKYQKAGVKAVLVGESLMKQ 272 (289)
T ss_pred HHHHHHHHcCceEEEecHHHHhc
Confidence 99999999999999999999874
|
|
| >PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.037 Score=49.94 Aligned_cols=80 Identities=24% Similarity=0.235 Sum_probs=58.1
Q ss_pred HHHHHHHHHhcC--CcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCC
Q 019244 188 WKDVKWLQTITK--LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 265 (344)
Q Consensus 188 ~~~i~~i~~~~~--~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~ 265 (344)
.+.|+.+++.++ +.|.+..+++.++++.+.++|+++++..+ ...+.+. .+.. ..++++. |..|
T Consensus 49 ~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~fivsp~----------~~~~v~~-~~~~--~~~~~~~--G~~t 113 (206)
T PRK09140 49 FDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGGRLIVTPN----------TDPEVIR-RAVA--LGMVVMP--GVAT 113 (206)
T ss_pred HHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCCEEECCC----------CCHHHHH-HHHH--CCCcEEc--ccCC
Confidence 356999998885 45666667999999999999999996522 1122222 2222 2455544 3999
Q ss_pred HHHHHHHHHcCCCEEEE
Q 019244 266 GTDVFKALALGASGIFI 282 (344)
Q Consensus 266 g~dv~kalalGAd~V~i 282 (344)
..++.++..+|||.+.+
T Consensus 114 ~~E~~~A~~~Gad~vk~ 130 (206)
T PRK09140 114 PTEAFAALRAGAQALKL 130 (206)
T ss_pred HHHHHHHHHcCCCEEEE
Confidence 99999999999999986
|
|
| >PRK08227 autoinducer 2 aldolase; Validated | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.069 Score=49.95 Aligned_cols=84 Identities=23% Similarity=0.359 Sum_probs=59.7
Q ss_pred HHHHHHhcCCcEEEEee------cCH-----HHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEE
Q 019244 191 VKWLQTITKLPILVKGV------LTA-----EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 259 (344)
Q Consensus 191 i~~i~~~~~~PvivK~v------~~~-----~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via 259 (344)
+.+-.+.|++|+++ .. .+. .-++.+.+.|||.|++.- +. +.+.++.+.. .+||+.
T Consensus 132 v~~ea~~~G~Plla-~~prG~~~~~~~~~ia~aaRiaaELGADiVK~~y----------~~-~~f~~vv~a~--~vPVvi 197 (264)
T PRK08227 132 LVDAGLRYGMPVMA-VTAVGKDMVRDARYFSLATRIAAEMGAQIIKTYY----------VE-EGFERITAGC--PVPIVI 197 (264)
T ss_pred HHHHHHHhCCcEEE-EecCCCCcCchHHHHHHHHHHHHHHcCCEEecCC----------CH-HHHHHHHHcC--CCcEEE
Confidence 44445568999987 32 111 126789999999999831 12 6677777755 799999
Q ss_pred ecCCCCH-HHH----HHHHHcCCCEEEEchHHHH
Q 019244 260 DGGVRRG-TDV----FKALALGASGIFIGRPVVY 288 (344)
Q Consensus 260 ~GGIr~g-~dv----~kalalGAd~V~ig~~~l~ 288 (344)
.||=... .|+ ..++..||..|.+||-++.
T Consensus 198 aGG~k~~~~~~L~~v~~ai~aGa~Gv~~GRNIfQ 231 (264)
T PRK08227 198 AGGKKLPERDALEMCYQAIDEGASGVDMGRNIFQ 231 (264)
T ss_pred eCCCCCCHHHHHHHHHHHHHcCCceeeechhhhc
Confidence 9998853 233 3577789999999997654
|
|
| >PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.033 Score=50.76 Aligned_cols=80 Identities=16% Similarity=0.130 Sum_probs=55.4
Q ss_pred HHHHHHHHHhc-----CCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecC
Q 019244 188 WKDVKWLQTIT-----KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 262 (344)
Q Consensus 188 ~~~i~~i~~~~-----~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GG 262 (344)
.+.|+.+++.+ ++-|.+..|++.++++.+.++|+++|+--+. ..+.+..+.+ .++|+ -=|
T Consensus 54 ~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA~FiVsP~~----------~~~v~~~~~~---~~i~~--iPG 118 (222)
T PRK07114 54 HEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLGANFIVTPLF----------NPDIAKVCNR---RKVPY--SPG 118 (222)
T ss_pred HHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCCCEEECCCC----------CHHHHHHHHH---cCCCE--eCC
Confidence 44566665433 2557777789999999999999999964211 2233333322 14444 458
Q ss_pred CCCHHHHHHHHHcCCCEEEE
Q 019244 263 VRRGTDVFKALALGASGIFI 282 (344)
Q Consensus 263 Ir~g~dv~kalalGAd~V~i 282 (344)
+-|+.++..|+.+||+.|=+
T Consensus 119 ~~TpsEi~~A~~~Ga~~vKl 138 (222)
T PRK07114 119 CGSLSEIGYAEELGCEIVKL 138 (222)
T ss_pred CCCHHHHHHHHHCCCCEEEE
Confidence 99999999999999998754
|
|
| >PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5 | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.045 Score=49.15 Aligned_cols=48 Identities=17% Similarity=0.306 Sum_probs=33.3
Q ss_pred hhHHHHHHHHHHc---cCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHH
Q 019244 239 ATIMALEEVVKAT---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 287 (344)
Q Consensus 239 ~~~~~l~~i~~~~---~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l 287 (344)
..++-+.++++.. +.++.|.+||||+. ..+.+..++|||.+.+||.++
T Consensus 148 ~~~~KI~~l~~~~~~~~~~~~I~vDGGI~~-~~~~~~~~aGad~~V~Gs~iF 198 (201)
T PF00834_consen 148 EVLEKIRELRKLIPENGLDFEIEVDGGINE-ENIKQLVEAGADIFVAGSAIF 198 (201)
T ss_dssp GHHHHHHHHHHHHHHHTCGSEEEEESSEST-TTHHHHHHHT--EEEESHHHH
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEECCCCH-HHHHHHHHcCCCEEEECHHHh
Confidence 3444455554433 34699999999984 577788889999999998765
|
1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D .... |
| >PRK08185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.97 E-value=1.5 Score=41.50 Aligned_cols=109 Identities=21% Similarity=0.294 Sum_probs=74.8
Q ss_pred cCHHHHHHHHHc-CCcEEEEcc---CCCCCCCCchh--hHHHHHHHHHHccCCCcEEEecCCCCHH-HHHHHHHcCCCEE
Q 019244 208 LTAEDARIAVQA-GAAGIIVSN---HGARQLDYVPA--TIMALEEVVKATQGRIPVFLDGGVRRGT-DVFKALALGASGI 280 (344)
Q Consensus 208 ~~~~~a~~~~~~-G~d~I~v~~---~gG~~~~~g~~--~~~~l~~i~~~~~~~~~via~GGIr~g~-dv~kalalGAd~V 280 (344)
.++++++...+. |+|++-++. ||-.. ..+.| .++.|.++++.+ ++|+++=||+..+. ++.|++.+|..=|
T Consensus 149 t~peea~~f~~~TgvD~LAvaiGt~HG~y~-~~~kp~L~~e~l~~I~~~~--~iPLVlHGgsg~~~e~~~~ai~~GI~Ki 225 (283)
T PRK08185 149 TDPEQAEDFVSRTGVDTLAVAIGTAHGIYP-KDKKPELQMDLLKEINERV--DIPLVLHGGSANPDAEIAESVQLGVGKI 225 (283)
T ss_pred CCHHHHHHHHHhhCCCEEEeccCcccCCcC-CCCCCCcCHHHHHHHHHhh--CCCEEEECCCCCCHHHHHHHHHCCCeEE
Confidence 478999998876 999999964 33221 11122 478899998877 79999999997665 5567899999999
Q ss_pred EEchHHHHHhhh-------cC------hHHHHHHHHHHHHHHHHHHHHhCCC
Q 019244 281 FIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 319 (344)
Q Consensus 281 ~ig~~~l~~~~~-------~G------~~~v~~~l~~l~~el~~~m~~~G~~ 319 (344)
-+++-+.++... .. ..-.....+.+.+..+..|..+|+.
T Consensus 226 Ni~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~i~~~gs~ 277 (283)
T PRK08185 226 NISSDMKYAFFKKVREILSDNPSLYEPNQIYPSAIEAAKEVVRHKMDLFNST 277 (283)
T ss_pred EeChHHHHHHHHHHHHHHHhCcCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999977554211 01 0113333455677777788888764
|
|
| >PLN02591 tryptophan synthase | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.13 Score=47.70 Aligned_cols=138 Identities=20% Similarity=0.166 Sum_probs=79.3
Q ss_pred ccccceeecccccccccCChhhHHHHHHHHHcCCcc--cc-CCHHHHHHHHHHHHHcCCcEEE-eccCCccccccHHHHH
Q 019244 69 KISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM--VY-KDRNVVAQLVRRAERAGFKAIA-LTVDTPRLGRREADIK 144 (344)
Q Consensus 69 ~l~~Pi~iapm~~~~~~~~~~~~~lA~aA~~~g~~~--~~-~d~~~~~~~i~~a~~ag~~~l~-~tvd~~~~g~r~~~~~ 144 (344)
+.+.|+++ |++-+....-+.....+.|+++|+-. ++ -..+..+++...+++.|...+. +++.++. .|-+.+.
T Consensus 76 ~~~~p~il--m~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~--~ri~~ia 151 (250)
T PLN02591 76 QLSCPIVL--FTYYNPILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAAKNGIELVLLTTPTTPT--ERMKAIA 151 (250)
T ss_pred CCCCCEEE--EecccHHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCCH--HHHHHHH
Confidence 34568764 77666443346667788888888754 11 2346666778888888877543 4455442 1222211
Q ss_pred hhcCCCCcccccccccccccccccccchhhHHHHhhcCCCCCcH-HHHHHHHHhcCCcEEEEee-cCHHHHHHHHHcCCc
Q 019244 145 NRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSW-KDVKWLQTITKLPILVKGV-LTAEDARIAVQAGAA 222 (344)
Q Consensus 145 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~i~~~~~~PvivK~v-~~~~~a~~~~~~G~d 222 (344)
. ...|+.. .+. .....+. ...-+... +.++.+|+.+++||++..- .++++++++.+.|+|
T Consensus 152 ~---~~~gFIY-~Vs--------~~GvTG~------~~~~~~~~~~~i~~vk~~~~~Pv~vGFGI~~~e~v~~~~~~GAD 213 (250)
T PLN02591 152 E---ASEGFVY-LVS--------STGVTGA------RASVSGRVESLLQELKEVTDKPVAVGFGISKPEHAKQIAGWGAD 213 (250)
T ss_pred H---hCCCcEE-Eee--------CCCCcCC------CcCCchhHHHHHHHHHhcCCCceEEeCCCCCHHHHHHHHhcCCC
Confidence 1 1111111 000 0000000 00001123 3599999988999999754 679999999999999
Q ss_pred EEEEcc
Q 019244 223 GIIVSN 228 (344)
Q Consensus 223 ~I~v~~ 228 (344)
+++|..
T Consensus 214 GvIVGS 219 (250)
T PLN02591 214 GVIVGS 219 (250)
T ss_pred EEEECH
Confidence 999954
|
|
| >PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.078 Score=48.04 Aligned_cols=81 Identities=22% Similarity=0.291 Sum_probs=60.3
Q ss_pred cHHHHHHHHHhcC-CcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCC
Q 019244 187 SWKDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 265 (344)
Q Consensus 187 ~~~~i~~i~~~~~-~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~ 265 (344)
..+.|+.+++.++ +-|.+..+++.++++.+.++|+++++.-+. +.+.+..+.+ ..++++ =|+.|
T Consensus 53 ~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~FivsP~~----------~~~vi~~a~~---~~i~~i--PG~~T 117 (212)
T PRK05718 53 ALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFIVSPGL----------TPPLLKAAQE---GPIPLI--PGVST 117 (212)
T ss_pred HHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEEECCCC----------CHHHHHHHHH---cCCCEe--CCCCC
Confidence 3456899988774 667777789999999999999999976321 1144444332 134444 47999
Q ss_pred HHHHHHHHHcCCCEEEE
Q 019244 266 GTDVFKALALGASGIFI 282 (344)
Q Consensus 266 g~dv~kalalGAd~V~i 282 (344)
+.++.+++.+||+.|-+
T Consensus 118 ptEi~~a~~~Ga~~vKl 134 (212)
T PRK05718 118 PSELMLGMELGLRTFKF 134 (212)
T ss_pred HHHHHHHHHCCCCEEEE
Confidence 99999999999999877
|
|
| >COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.11 Score=48.57 Aligned_cols=89 Identities=26% Similarity=0.288 Sum_probs=66.8
Q ss_pred cHH-HHHHHHHhcC-CcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHH--ccCCCcEEEecC
Q 019244 187 SWK-DVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKA--TQGRIPVFLDGG 262 (344)
Q Consensus 187 ~~~-~i~~i~~~~~-~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~--~~~~~~via~GG 262 (344)
+|+ .|++.|+..+ .+-|-=++-|.+++..+.++|+|.|-++|.. + +.+.++.+. .++++-+=+|||
T Consensus 173 ~i~~Av~~aR~~~~~~~kIEVEvesle~~~eAl~agaDiImLDNm~-------~---e~~~~av~~l~~~~~~~lEaSGg 242 (280)
T COG0157 173 SITEAVRRARAAAPFTKKIEVEVESLEEAEEALEAGADIIMLDNMS-------P---EELKEAVKLLGLAGRALLEASGG 242 (280)
T ss_pred cHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHcCCCEEEecCCC-------H---HHHHHHHHHhccCCceEEEEeCC
Confidence 454 5888888764 3334445689999999999999999998842 2 344444444 455788889999
Q ss_pred CCCHHHHHHHHHcCCCEEEEchHH
Q 019244 263 VRRGTDVFKALALGASGIFIGRPV 286 (344)
Q Consensus 263 Ir~g~dv~kalalGAd~V~ig~~~ 286 (344)
|. ...+..+-..|.|.+-+|.+.
T Consensus 243 It-~~ni~~yA~tGVD~IS~galt 265 (280)
T COG0157 243 IT-LENIREYAETGVDVISVGALT 265 (280)
T ss_pred CC-HHHHHHHhhcCCCEEEeCccc
Confidence 97 788888888999999999764
|
|
| >CHL00200 trpA tryptophan synthase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.16 Score=47.57 Aligned_cols=40 Identities=20% Similarity=0.260 Sum_probs=34.9
Q ss_pred HHHHHHHHhcCCcEEEEee-cCHHHHHHHHHcCCcEEEEcc
Q 019244 189 KDVKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSN 228 (344)
Q Consensus 189 ~~i~~i~~~~~~PvivK~v-~~~~~a~~~~~~G~d~I~v~~ 228 (344)
+.++.+|+.+++|+.+..- .++++++.+.++|+|+++|..
T Consensus 192 ~~i~~ir~~t~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGS 232 (263)
T CHL00200 192 KLIETIKKMTNKPIILGFGISTSEQIKQIKGWNINGIVIGS 232 (263)
T ss_pred HHHHHHHHhcCCCEEEECCcCCHHHHHHHHhcCCCEEEECH
Confidence 4688999988999999764 669999999999999999953
|
|
| >TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.042 Score=55.39 Aligned_cols=68 Identities=22% Similarity=0.336 Sum_probs=54.5
Q ss_pred HHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 019244 210 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 283 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig 283 (344)
.+.++.+.++|+|.|.|...-|+ ....++.+.++++.. .++||++ |+|-|.+++..++.+|||+|.+|
T Consensus 226 ~~r~~~L~~aG~d~I~vd~a~g~----~~~~~~~i~~i~~~~-~~~~vi~-G~v~t~~~a~~l~~aGad~i~vg 293 (450)
T TIGR01302 226 KERAEALVKAGVDVIVIDSSHGH----SIYVIDSIKEIKKTY-PDLDIIA-GNVATAEQAKALIDAGADGLRVG 293 (450)
T ss_pred HHHHHHHHHhCCCEEEEECCCCc----HhHHHHHHHHHHHhC-CCCCEEE-EeCCCHHHHHHHHHhCCCEEEEC
Confidence 46788999999999999874332 234566777777764 3789988 99999999999999999999766
|
This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models. |
| >PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.098 Score=50.90 Aligned_cols=68 Identities=22% Similarity=0.308 Sum_probs=50.8
Q ss_pred HHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 019244 210 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 283 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig 283 (344)
.+.+..+.++|+|.|+++..-|+ .....+.+.++++..+ ++|||+ |.|-|.+-+...+..|||+|-+|
T Consensus 110 ~er~~~L~~agvD~ivID~a~g~----s~~~~~~ik~ik~~~~-~~~via-GNV~T~e~a~~L~~aGad~vkVG 177 (352)
T PF00478_consen 110 FERAEALVEAGVDVIVIDSAHGH----SEHVIDMIKKIKKKFP-DVPVIA-GNVVTYEGAKDLIDAGADAVKVG 177 (352)
T ss_dssp HHHHHHHHHTT-SEEEEE-SSTT----SHHHHHHHHHHHHHST-TSEEEE-EEE-SHHHHHHHHHTT-SEEEES
T ss_pred HHHHHHHHHcCCCEEEccccCcc----HHHHHHHHHHHHHhCC-CceEEe-cccCCHHHHHHHHHcCCCEEEEe
Confidence 46788899999999999863332 2344567788877764 788886 88999999999889999999888
|
These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. |
| >cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.16 Score=46.78 Aligned_cols=114 Identities=23% Similarity=0.279 Sum_probs=71.0
Q ss_pred HHHHHHHHHcCC-cc----ccCCHHH----HHHHHHHHHHc---CCcEEEeccCCccccccHHHHHhhcCCCCccccccc
Q 019244 91 YATARAASAAGT-IM----VYKDRNV----VAQLVRRAERA---GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNF 158 (344)
Q Consensus 91 ~~lA~aA~~~g~-~~----~~~d~~~----~~~~i~~a~~a---g~~~l~~tvd~~~~g~r~~~~~~~~~~~~g~~~~~~ 158 (344)
..+|+-|++.+. -. +..|+.. ..+.+++++.. ||..+-+..|.+....+-.+..-.+-.|.|
T Consensus 79 v~~a~lare~~~~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~l~~~G~~~vmPlg------ 152 (248)
T cd04728 79 VRTARLAREALGTDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTVLPYCTDDPVLAKRLEDAGCAAVMPLG------ 152 (248)
T ss_pred HHHHHHHHHHhCCCeEEEEEecCccccccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCCEeCCCC------
Confidence 457777776643 33 2333321 23456677766 999887888878776554432100000100
Q ss_pred ccccccccccccchhhHHHHhhcCCCCCcHHHHHHHHHhcCCcEEEEe-ecCHHHHHHHHHcCCcEEEEcc
Q 019244 159 QGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSN 228 (344)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~PvivK~-v~~~~~a~~~~~~G~d~I~v~~ 228 (344)
+.+.. +.+-.+++.|+.+++..++||++-+ +.+++++.++.+.|+|++.+.+
T Consensus 153 -----------------~pIGs-g~Gi~~~~~I~~I~e~~~vpVI~egGI~tpeda~~AmelGAdgVlV~S 205 (248)
T cd04728 153 -----------------SPIGS-GQGLLNPYNLRIIIERADVPVIVDAGIGTPSDAAQAMELGADAVLLNT 205 (248)
T ss_pred -----------------cCCCC-CCCCCCHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHcCCCEEEECh
Confidence 01111 1122257789999998889999876 5899999999999999999854
|
ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH). |
| >PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed | Back alignment and domain information |
|---|
Probab=95.71 E-value=1.5 Score=42.98 Aligned_cols=97 Identities=26% Similarity=0.331 Sum_probs=62.7
Q ss_pred cHHHHHHHHHhcCCcEEEEeec--CHHHH----HHHHHcCCcEEEEccCCCCCCC-Cch--hhHHHHHHHHHHccCCCcE
Q 019244 187 SWKDVKWLQTITKLPILVKGVL--TAEDA----RIAVQAGAAGIIVSNHGARQLD-YVP--ATIMALEEVVKATQGRIPV 257 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v~--~~~~a----~~~~~~G~d~I~v~~~gG~~~~-~g~--~~~~~l~~i~~~~~~~~~v 257 (344)
+++.++.+.+ +++||++|..+ +.++. ..+.+.|..-|++.-+|=+... .+. ..+.+++.+++.. .+||
T Consensus 214 n~~LL~~~a~-~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~L~erg~s~yp~~~~~~ldl~~i~~lk~~~--~~PV 290 (360)
T PRK12595 214 NFELLKAAGR-VNKPVLLKRGLSATIEEFIYAAEYIMSQGNGQIILCERGIRTYEKATRNTLDISAVPILKQET--HLPV 290 (360)
T ss_pred CHHHHHHHHc-cCCcEEEeCCCCCCHHHHHHHHHHHHHCCCCCEEEECCccCCCCCCCCCCcCHHHHHHHHHHh--CCCE
Confidence 4566777766 58999999874 77663 4556788866666533433222 111 2556777777654 6899
Q ss_pred EEecC----CCCHH--HHHHHHHcCCCEEEEchHH
Q 019244 258 FLDGG----VRRGT--DVFKALALGASGIFIGRPV 286 (344)
Q Consensus 258 ia~GG----Ir~g~--dv~kalalGAd~V~ig~~~ 286 (344)
+.+.. -|... -...|+++|||++++-+.+
T Consensus 291 ~~d~~Hs~G~r~~~~~~a~aAva~GAdg~~iE~H~ 325 (360)
T PRK12595 291 MVDVTHSTGRRDLLLPTAKAALAIGADGVMAEVHP 325 (360)
T ss_pred EEeCCCCCcchhhHHHHHHHHHHcCCCeEEEEecC
Confidence 99643 22222 3345789999999999877
|
|
| >PLN02617 imidazole glycerol phosphate synthase hisHF | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.06 Score=55.40 Aligned_cols=76 Identities=24% Similarity=0.218 Sum_probs=58.6
Q ss_pred HHHHHHHHcCCcEEEEccCCC-CC-CCCchhhHHHHHHHHHHccCCCcEEEecCCCCH-----------HHHHHHHHcCC
Q 019244 211 EDARIAVQAGAAGIIVSNHGA-RQ-LDYVPATIMALEEVVKATQGRIPVFLDGGVRRG-----------TDVFKALALGA 277 (344)
Q Consensus 211 ~~a~~~~~~G~d~I~v~~~gG-~~-~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g-----------~dv~kalalGA 277 (344)
+.|+.-.+.|||.|.+-.--+ +. ...-.+.++.+.++.+.+ .+|+-+-||||+- +++.++|.+||
T Consensus 271 e~a~~y~~~Gadel~~~Di~~~~~~~~~~~~~~~~i~~i~~~~--~ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l~~Ga 348 (538)
T PLN02617 271 ELAGQYYKDGADEVAFLNITGFRDFPLGDLPMLEVLRRASENV--FVPLTVGGGIRDFTDANGRYYSSLEVASEYFRSGA 348 (538)
T ss_pred HHHHHHHHcCCCEEEEEECCCCcCCcccchhHHHHHHHHHhhC--CCCEEEcCCccccccccccccchHHHHHHHHHcCC
Confidence 668889999999988754322 11 111234577888888776 7999999999998 55899999999
Q ss_pred CEEEEchHHHH
Q 019244 278 SGIFIGRPVVY 288 (344)
Q Consensus 278 d~V~ig~~~l~ 288 (344)
|-|.+++..+.
T Consensus 349 dkV~i~s~Av~ 359 (538)
T PLN02617 349 DKISIGSDAVY 359 (538)
T ss_pred CEEEEChHHHh
Confidence 99999997765
|
|
| >PLN02274 inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.054 Score=55.40 Aligned_cols=68 Identities=16% Similarity=0.218 Sum_probs=52.7
Q ss_pred HHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 019244 210 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 283 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig 283 (344)
.+-++.+.++|+|.|.++..-|+ ....++.+.++++..+ +++||+ |+|.|.+++..++.+|||+|.+|
T Consensus 250 ~~r~~~l~~ag~d~i~iD~~~g~----~~~~~~~i~~ik~~~p-~~~vi~-g~v~t~e~a~~a~~aGaD~i~vg 317 (505)
T PLN02274 250 KERLEHLVKAGVDVVVLDSSQGD----SIYQLEMIKYIKKTYP-ELDVIG-GNVVTMYQAQNLIQAGVDGLRVG 317 (505)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCC----cHHHHHHHHHHHHhCC-CCcEEE-ecCCCHHHHHHHHHcCcCEEEEC
Confidence 46688999999999999875442 2345577888877553 455544 88999999999999999999775
|
|
| >PLN02417 dihydrodipicolinate synthase | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.11 Score=49.08 Aligned_cols=92 Identities=18% Similarity=0.292 Sum_probs=60.7
Q ss_pred HHHHHHcCCcEEEEccCCCCCCCCch-hhHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHcCCCEEEEchHHH
Q 019244 213 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 287 (344)
Q Consensus 213 a~~~~~~G~d~I~v~~~gG~~~~~g~-~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~k----alalGAd~V~ig~~~l 287 (344)
++.+.+.|+++|.+.|+-|-...-.. .-.+.+..+.+.+.+++||++.=|=.+-.|+++ |-.+|||+|++..|++
T Consensus 28 i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~~a~~a~~~Gadav~~~~P~y 107 (280)
T PLN02417 28 VNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYY 107 (280)
T ss_pred HHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEECCCccHHHHHHHHHHHHHcCCCEEEEcCCcc
Confidence 34567899999999876553211111 123345555666667899998666556666664 3568999999999987
Q ss_pred HHhhhcChHHHHHHHHHHHH
Q 019244 288 YSLAAEGEKGVRRVLEMLRE 307 (344)
Q Consensus 288 ~~~~~~G~~~v~~~l~~l~~ 307 (344)
+. ..++++.++++.+.+
T Consensus 108 ~~---~~~~~i~~~f~~va~ 124 (280)
T PLN02417 108 GK---TSQEGLIKHFETVLD 124 (280)
T ss_pred CC---CCHHHHHHHHHHHHh
Confidence 64 245677777666554
|
|
| >PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.055 Score=55.24 Aligned_cols=230 Identities=17% Similarity=0.219 Sum_probs=122.2
Q ss_pred cccccceeecccC-CCCCCCcceeec-ccccccceeecccccccccCChhhHHHHHHHHHcCCcc-cc--CCHHHHHHHH
Q 019244 42 AFSRILFRPRILI-DVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM-VY--KDRNVVAQLV 116 (344)
Q Consensus 42 ~f~~i~l~pr~l~-~~~~vd~st~l~-g~~l~~Pi~iapm~~~~~~~~~~~~~lA~aA~~~g~~~-~~--~d~~~~~~~i 116 (344)
.||++.|+|..-. ..++||++|.+- ...++.||+-++|.. -.+..||.+.++.|... ++ .+.+...+.+
T Consensus 19 t~ddv~l~p~~~~~~~~~v~~~t~l~~~~~l~~Pii~a~M~~------vt~~~ma~a~a~~GglGvi~~~~~~e~~~~~v 92 (495)
T PTZ00314 19 TYDDVILLPGYIDFSRDDVDLSTRLTRNIRLKIPIVSSPMDT------VTEHKMAIAMALMGGIGVIHNNCSIEEQVEEV 92 (495)
T ss_pred CccceEecccccccccccccccccccCCcccCCceeecCccc------cccHHHHHHHHHCCCeEEecCCCCHHHHHHHH
Confidence 3999999998542 446889998876 468899999999963 24567999999998766 33 2556666667
Q ss_pred HHHHHcCC----cEEEeccCCccccccHHHHHhhcC-CCCccc----ccccccccccccc--cccchhhHHHHhh--c--
Q 019244 117 RRAERAGF----KAIALTVDTPRLGRREADIKNRFT-LPPFLT----LKNFQGLDLGKMD--EANDSGLAAYVAG--Q-- 181 (344)
Q Consensus 117 ~~a~~ag~----~~l~~tvd~~~~g~r~~~~~~~~~-~~~g~~----~~~~~~~~~~~~~--~~~~~~~~~~~~~--~-- 181 (344)
++++++.- ..+.++++.+..-....-.+.++. +|.--. -+.++-+....+. ........+++.+ .
T Consensus 93 ~kvk~~e~g~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~~~~~~~V~diMt~~~~lv 172 (495)
T PTZ00314 93 RKVKRFENGFIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFVKDKSTPVSEVMTPREKLV 172 (495)
T ss_pred hhccccccccccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhcccCCCCHHHhhCCcCCce
Confidence 77765421 123334443321111100001110 110000 0000000000000 0000011111111 0
Q ss_pred -CCCCCc------------------------------HHHHHHHHHh------cCCcEEEEee--cC---HHHHHHHHHc
Q 019244 182 -IDRSLS------------------------------WKDVKWLQTI------TKLPILVKGV--LT---AEDARIAVQA 219 (344)
Q Consensus 182 -~~~~~~------------------------------~~~i~~i~~~------~~~PvivK~v--~~---~~~a~~~~~~ 219 (344)
...+.+ .+++.+.... -...+.|... .+ .+.++.+.++
T Consensus 173 tv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~~~p~a~~D~~GrL~Vgaavg~~~~~~~~~~~l~~a 252 (495)
T PTZ00314 173 VGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNRGYPNASLDSNGQLLVGAAISTRPEDIERAAALIEA 252 (495)
T ss_pred EeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhcccCchhhhccCCCEEEEEEECCCHHHHHHHHHHHHC
Confidence 001111 1222111110 0122333222 22 3568889999
Q ss_pred CCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 019244 220 GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 283 (344)
Q Consensus 220 G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig 283 (344)
|+|.|.+...-|+. ...++.+.++++..+ +++|++ |.|.|.+++..++.+|||++-+|
T Consensus 253 g~d~i~id~a~G~s----~~~~~~i~~ik~~~~-~~~v~a-G~V~t~~~a~~~~~aGad~I~vg 310 (495)
T PTZ00314 253 GVDVLVVDSSQGNS----IYQIDMIKKLKSNYP-HVDIIA-GNVVTADQAKNLIDAGADGLRIG 310 (495)
T ss_pred CCCEEEEecCCCCc----hHHHHHHHHHHhhCC-CceEEE-CCcCCHHHHHHHHHcCCCEEEEC
Confidence 99999998643321 224677888877653 688887 99999999999999999999654
|
|
| >PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.21 Score=53.64 Aligned_cols=85 Identities=13% Similarity=0.106 Sum_probs=56.6
Q ss_pred EEEee-cCHHHHHHHH----Hc---CCcEEEEccCCCCCCC-Cc--hhhHHHHHHHHHHccC-CCcEEEecCCCCHHHHH
Q 019244 203 LVKGV-LTAEDARIAV----QA---GAAGIIVSNHGARQLD-YV--PATIMALEEVVKATQG-RIPVFLDGGVRRGTDVF 270 (344)
Q Consensus 203 ivK~v-~~~~~a~~~~----~~---G~d~I~v~~~gG~~~~-~g--~~~~~~l~~i~~~~~~-~~~via~GGIr~g~dv~ 270 (344)
++... -+.+++..+. .. |+|+|.++---.+.-. .. +-.++.+.++++.+.. .+||++-||| +..++.
T Consensus 103 ~iG~S~h~~~e~~~~~~~~~~~g~~gaDYi~~Gpvf~T~tK~~~~~~lG~~~l~~~~~~~~~~~iPv~AiGGI-~~~~~~ 181 (755)
T PRK09517 103 ELGLTIETLDQLEAVIAQCAETGVALPDVIGIGPVASTATKPDAPPALGVDGIAEIAAVAQDHGIASVAIGGV-GLRNAA 181 (755)
T ss_pred EEEEeCCCHHHHHHHHhhhccCCCCCCCEEEECCccccCCCCCCCCCCCHHHHHHHHHhcCcCCCCEEEECCC-CHHHHH
Confidence 44433 4666665432 23 5999998743222111 11 1235667777666521 3999999999 699999
Q ss_pred HHHHcCCCEEEEchHHHH
Q 019244 271 KALALGASGIFIGRPVVY 288 (344)
Q Consensus 271 kalalGAd~V~ig~~~l~ 288 (344)
.+++.||+.|.+.+.++.
T Consensus 182 ~~~~~Ga~giAvisai~~ 199 (755)
T PRK09517 182 ELAATGIDGLCVVSAIMA 199 (755)
T ss_pred HHHHcCCCEEEEehHhhC
Confidence 999999999999999874
|
|
| >PRK08091 ribulose-phosphate 3-epimerase; Validated | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.3 Score=44.77 Aligned_cols=96 Identities=9% Similarity=-0.007 Sum_probs=61.1
Q ss_pred HHHHHHHHhcCCcEEEEee----cCHHHHHHHHHcCCcEEEEcc--CCCCCCCCchhhHHHHHHHHHHcc---CCCcEEE
Q 019244 189 KDVKWLQTITKLPILVKGV----LTAEDARIAVQAGAAGIIVSN--HGARQLDYVPATIMALEEVVKATQ---GRIPVFL 259 (344)
Q Consensus 189 ~~i~~i~~~~~~PvivK~v----~~~~~a~~~~~~G~d~I~v~~--~gG~~~~~g~~~~~~l~~i~~~~~---~~~~via 259 (344)
+.+++|++. +.++-+..+ .+.+..+..++. +|.|.+=+ -|.....+-+..++-+.++++... .++.|-+
T Consensus 107 ~~l~~Ik~~-g~~~kaGlalnP~Tp~~~i~~~l~~-vD~VLiMtV~PGfgGQ~f~~~~l~KI~~lr~~~~~~~~~~~IeV 184 (228)
T PRK08091 107 LTIEWLAKQ-KTTVLIGLCLCPETPISLLEPYLDQ-IDLIQILTLDPRTGTKAPSDLILDRVIQVENRLGNRRVEKLISI 184 (228)
T ss_pred HHHHHHHHC-CCCceEEEEECCCCCHHHHHHHHhh-cCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCceEEE
Confidence 467888885 554444443 344666666653 88887642 221112233445555555554432 2567999
Q ss_pred ecCCCCHHHHHHHHHcCCCEEEEchHHH
Q 019244 260 DGGVRRGTDVFKALALGASGIFIGRPVV 287 (344)
Q Consensus 260 ~GGIr~g~dv~kalalGAd~V~ig~~~l 287 (344)
||||+ .+.+.++.++|||.+.+|+.++
T Consensus 185 DGGI~-~~ti~~l~~aGaD~~V~GSalF 211 (228)
T PRK08091 185 DGSMT-LELASYLKQHQIDWVVSGSALF 211 (228)
T ss_pred ECCCC-HHHHHHHHHCCCCEEEEChhhh
Confidence 99998 6678888899999999998854
|
|
| >PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.14 Score=48.90 Aligned_cols=92 Identities=20% Similarity=0.304 Sum_probs=60.6
Q ss_pred HHHHHHcCCcEEEEccCCCCCCCCch-hhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHH----HHcCCCEEEEchHHH
Q 019244 213 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKA----LALGASGIFIGRPVV 287 (344)
Q Consensus 213 a~~~~~~G~d~I~v~~~gG~~~~~g~-~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~ka----lalGAd~V~ig~~~l 287 (344)
++.+.+.|+++|.+.|+-|-...... .-.+.+..+++.+.+++|||+.-|- +-.+.++. -.+|||+|++..|++
T Consensus 34 i~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~-~t~~~i~~~~~a~~~Gadav~~~pP~y 112 (303)
T PRK03620 34 LEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAGG-GTAQAIEYAQAAERAGADGILLLPPYL 112 (303)
T ss_pred HHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCC-CHHHHHHHHHHHHHhCCCEEEECCCCC
Confidence 34577899999999776543221111 1234556666667778999986663 56666543 347999999999987
Q ss_pred HHhhhcChHHHHHHHHHHHHH
Q 019244 288 YSLAAEGEKGVRRVLEMLREE 308 (344)
Q Consensus 288 ~~~~~~G~~~v~~~l~~l~~e 308 (344)
+.. .++++.++++.+.+.
T Consensus 113 ~~~---~~~~i~~~f~~va~~ 130 (303)
T PRK03620 113 TEA---PQEGLAAHVEAVCKS 130 (303)
T ss_pred CCC---CHHHHHHHHHHHHHh
Confidence 642 456676776666554
|
|
| >PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.22 Score=45.06 Aligned_cols=92 Identities=15% Similarity=0.074 Sum_probs=61.6
Q ss_pred cHHHHHHHHHhcCCcEEEE---e-----e---cCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCC
Q 019244 187 SWKDVKWLQTITKLPILVK---G-----V---LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRI 255 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK---~-----v---~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~ 255 (344)
+++.++++++.+++|++.. - + .+.++++.+.++|+|+|.+...-.... .+....+.+..+++. ..+
T Consensus 44 ~~~~i~~i~~~~~~Pil~~~~~d~~~~~~~~~~~~~~v~~a~~aGad~I~~d~~~~~~p-~~~~~~~~i~~~~~~--~~i 120 (221)
T PRK01130 44 GVEDIKAIRAVVDVPIIGIIKRDYPDSEVYITPTLKEVDALAAAGADIIALDATLRPRP-DGETLAELVKRIKEY--PGQ 120 (221)
T ss_pred CHHHHHHHHHhCCCCEEEEEecCCCCCCceECCCHHHHHHHHHcCCCEEEEeCCCCCCC-CCCCHHHHHHHHHhC--CCC
Confidence 3678999999889998722 1 1 235789999999999888764211100 011222344444432 357
Q ss_pred cEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 019244 256 PVFLDGGVRRGTDVFKALALGASGIFIG 283 (344)
Q Consensus 256 ~via~GGIr~g~dv~kalalGAd~V~ig 283 (344)
+++. ++.+.+++.++..+|+|.+.+.
T Consensus 121 ~vi~--~v~t~ee~~~a~~~G~d~i~~~ 146 (221)
T PRK01130 121 LLMA--DCSTLEEGLAAQKLGFDFIGTT 146 (221)
T ss_pred eEEE--eCCCHHHHHHHHHcCCCEEEcC
Confidence 7665 6789999999999999999764
|
|
| >TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.15 Score=48.36 Aligned_cols=93 Identities=15% Similarity=0.218 Sum_probs=61.8
Q ss_pred HHHHHHcCCcEEEEccCCCCCCCCc-hhhHHHHHHHHHHccCCCcEEEecCCCCHHHHH----HHHHcCCCEEEEchHHH
Q 019244 213 ARIAVQAGAAGIIVSNHGARQLDYV-PATIMALEEVVKATQGRIPVFLDGGVRRGTDVF----KALALGASGIFIGRPVV 287 (344)
Q Consensus 213 a~~~~~~G~d~I~v~~~gG~~~~~g-~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~----kalalGAd~V~ig~~~l 287 (344)
++.+.+.|+++|.+.|+-|-...-. -...+.+..+++.+.+++||++.-|-.+-.|.+ .|-++|||++++..|++
T Consensus 27 v~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~~A~~~Gad~v~v~pP~y 106 (294)
T TIGR02313 27 IEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGALNHDETLELTKFAEEAGADAAMVIVPYY 106 (294)
T ss_pred HHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHHHHHHcCCCEEEEcCccC
Confidence 4457789999999977644321111 122345555666667789999866666666664 34558999999999998
Q ss_pred HHhhhcChHHHHHHHHHHHHH
Q 019244 288 YSLAAEGEKGVRRVLEMLREE 308 (344)
Q Consensus 288 ~~~~~~G~~~v~~~l~~l~~e 308 (344)
+.. .++++.+++..+.+.
T Consensus 107 ~~~---~~~~l~~~f~~ia~a 124 (294)
T TIGR02313 107 NKP---NQEALYDHFAEVADA 124 (294)
T ss_pred CCC---CHHHHHHHHHHHHHh
Confidence 753 456666666666554
|
This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism. |
| >cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.66 Score=43.86 Aligned_cols=91 Identities=23% Similarity=0.279 Sum_probs=52.9
Q ss_pred HHHHHHHhcCCcEEEEee-cCHHH----HHHHHHcCCcEEEEccC------CCCCCCCchh-hHHHHHHHHHHccCCCcE
Q 019244 190 DVKWLQTITKLPILVKGV-LTAED----ARIAVQAGAAGIIVSNH------GARQLDYVPA-TIMALEEVVKATQGRIPV 257 (344)
Q Consensus 190 ~i~~i~~~~~~PvivK~v-~~~~~----a~~~~~~G~d~I~v~~~------gG~~~~~g~~-~~~~l~~i~~~~~~~~~v 257 (344)
.+...++..+.|+++-.. .++++ ++.+.++|+|+|.+.-+ +|.++...+. ..+.+..+++.+ ++||
T Consensus 80 ~~~~~~~~~~~p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~--~~Pv 157 (296)
T cd04740 80 ELLPWLREFGTPVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKAT--DVPV 157 (296)
T ss_pred HHHHHhhcCCCcEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhcc--CCCE
Confidence 344444445789988765 34444 67788999999998421 1211111111 223455555444 5787
Q ss_pred EE--ecCCCCHHHHHHHH-HcCCCEEEE
Q 019244 258 FL--DGGVRRGTDVFKAL-ALGASGIFI 282 (344)
Q Consensus 258 ia--~GGIr~g~dv~kal-alGAd~V~i 282 (344)
++ +..+....++++.+ .+|||++.+
T Consensus 158 ~vKl~~~~~~~~~~a~~~~~~G~d~i~~ 185 (296)
T cd04740 158 IVKLTPNVTDIVEIARAAEEAGADGLTL 185 (296)
T ss_pred EEEeCCCchhHHHHHHHHHHcCCCEEEE
Confidence 75 34444566767644 589998865
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.15 Score=48.25 Aligned_cols=92 Identities=20% Similarity=0.316 Sum_probs=60.8
Q ss_pred HHHHHHcCCcEEEEccCCCCCCCCchh-hHHHHHHHHHHccCCCcEEEecCCCCHHHHHHH----HHcCCCEEEEchHHH
Q 019244 213 ARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKA----LALGASGIFIGRPVV 287 (344)
Q Consensus 213 a~~~~~~G~d~I~v~~~gG~~~~~g~~-~~~~l~~i~~~~~~~~~via~GGIr~g~dv~ka----lalGAd~V~ig~~~l 287 (344)
++.+.+.|+++|.+.|+-|-...-... -.+.+..+.+.+.+++|||+.-|- +-.+.++. -.+|||++++-.|++
T Consensus 27 ~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~-~t~~~i~~a~~a~~~Gad~v~~~pP~y 105 (289)
T cd00951 27 VEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAGY-GTATAIAYAQAAEKAGADGILLLPPYL 105 (289)
T ss_pred HHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecCC-CHHHHHHHHHHHHHhCCCEEEECCCCC
Confidence 345778999999997754432211111 234455566666678999997775 66666643 347999999999987
Q ss_pred HHhhhcChHHHHHHHHHHHHH
Q 019244 288 YSLAAEGEKGVRRVLEMLREE 308 (344)
Q Consensus 288 ~~~~~~G~~~v~~~l~~l~~e 308 (344)
+.. .++++.++++.+.+.
T Consensus 106 ~~~---~~~~i~~~f~~v~~~ 123 (289)
T cd00951 106 TEA---PQEGLYAHVEAVCKS 123 (289)
T ss_pred CCC---CHHHHHHHHHHHHhc
Confidence 642 456666666665443
|
The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate. |
| >COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.13 Score=47.18 Aligned_cols=73 Identities=30% Similarity=0.423 Sum_probs=58.3
Q ss_pred HHHHHHHHHcCCcEEEEcc-CCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHH
Q 019244 210 AEDARIAVQAGAAGIIVSN-HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 286 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~-~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~ 286 (344)
.+.|+.-.+.|+..+.+-- .|- ...++-..+++.++.+.. ++||=..|||||-+++.+.+.+|++-|.+|+..
T Consensus 34 ~~~a~~~~~~Ga~~lHlVDLdgA--~~g~~~n~~~i~~i~~~~--~~~vQvGGGIRs~~~v~~ll~~G~~rViiGt~a 107 (241)
T COG0106 34 LEVAKKWSDQGAEWLHLVDLDGA--KAGGPRNLEAIKEILEAT--DVPVQVGGGIRSLEDVEALLDAGVARVIIGTAA 107 (241)
T ss_pred HHHHHHHHHcCCcEEEEeecccc--ccCCcccHHHHHHHHHhC--CCCEEeeCCcCCHHHHHHHHHCCCCEEEEecce
Confidence 4678888899999887632 111 113355678889998877 799999999999999999999999999999954
|
|
| >KOG1606 consensus Stationary phase-induced protein, SOR/SNZ family [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.17 Score=45.37 Aligned_cols=89 Identities=26% Similarity=0.426 Sum_probs=62.4
Q ss_pred hcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCC---------------------CCC---------chhhHHHHHH
Q 019244 197 ITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ---------------------LDY---------VPATIMALEE 246 (344)
Q Consensus 197 ~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~---------------------~~~---------g~~~~~~l~~ 246 (344)
++++|+++. ..+.-+|.+-+.-|+.-|..-+.-|+. ++. -..+++.+.+
T Consensus 123 nFkvPFvCG-~rdlGEALRRI~EGAAMIRtkGeagTG~v~EaVkhvr~i~geir~~~~m~~dev~t~Ak~i~aP~dLv~~ 201 (296)
T KOG1606|consen 123 NFKVPFVCG-CRDLGEALRRIREGAAMIRTKGEAGTGDVSEAVKHVRSINGEIRVLKNMDDDEVFTFAKEIAAPYDLVKQ 201 (296)
T ss_pred cCcCceeec-cccHHHHHHHHhhchhhheeccccCCCcHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCcHHHHHH
Confidence 457898864 566677777788899999887654431 110 0112334444
Q ss_pred HHHHccCCCcE--EEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 247 VVKATQGRIPV--FLDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 247 i~~~~~~~~~v--ia~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
..+ -+++|| ++.|||.|+.|++-.+.||+|.|++|+.++.
T Consensus 202 t~q--~GrlPVV~FAaGGvaTPADAALmMQLGCdGVFVGSgiFk 243 (296)
T KOG1606|consen 202 TKQ--LGRLPVVNFAAGGVATPADAALMMQLGCDGVFVGSGIFK 243 (296)
T ss_pred HHH--cCCCceEEecccCcCChhHHHHHHHcCCCeEEecccccc
Confidence 333 247776 5799999999999999999999999997765
|
|
| >cd00408 DHDPS-like Dihydrodipicolinate synthase family | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.19 Score=47.15 Aligned_cols=92 Identities=21% Similarity=0.386 Sum_probs=61.1
Q ss_pred HHHHHHcCCcEEEEccCCCCCCCCch-hhHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHcCCCEEEEchHHH
Q 019244 213 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 287 (344)
Q Consensus 213 a~~~~~~G~d~I~v~~~gG~~~~~g~-~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~k----alalGAd~V~ig~~~l 287 (344)
++.+.+.|+++|.+.|+-|-...... ...+.+..+++...+++||++.-|=.+-.++++ +-.+|||++++..|++
T Consensus 24 i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~v~pP~y 103 (281)
T cd00408 24 VEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEEAGADGVLVVPPYY 103 (281)
T ss_pred HHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEECCCcC
Confidence 34577889999999876553222222 223456666666667899998666656665554 3347999999999998
Q ss_pred HHhhhcChHHHHHHHHHHHH
Q 019244 288 YSLAAEGEKGVRRVLEMLRE 307 (344)
Q Consensus 288 ~~~~~~G~~~v~~~l~~l~~ 307 (344)
+. ..++++.++++.+.+
T Consensus 104 ~~---~~~~~~~~~~~~ia~ 120 (281)
T cd00408 104 NK---PSQEGIVAHFKAVAD 120 (281)
T ss_pred CC---CCHHHHHHHHHHHHh
Confidence 75 245666666665544
|
A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family. |
| >TIGR00262 trpA tryptophan synthase, alpha subunit | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.28 Score=45.68 Aligned_cols=41 Identities=34% Similarity=0.392 Sum_probs=35.9
Q ss_pred cHHHHHHHHHhcCCcEEEEee-cCHHHHHHHHHcCCcEEEEc
Q 019244 187 SWKDVKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVS 227 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v-~~~~~a~~~~~~G~d~I~v~ 227 (344)
..+.++++|+.++.||++.+- .++++++.+.++|+|+++|.
T Consensus 186 ~~~~i~~lr~~~~~pi~vgfGI~~~e~~~~~~~~GADgvVvG 227 (256)
T TIGR00262 186 LNELVKRLKAYSAKPVLVGFGISKPEQVKQAIDAGADGVIVG 227 (256)
T ss_pred HHHHHHHHHhhcCCCEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 456799999988999999775 56999999999999999985
|
Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences. |
| >cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.69 Score=43.51 Aligned_cols=92 Identities=25% Similarity=0.251 Sum_probs=53.5
Q ss_pred HHHHHHHh-cCCcEEEEee-cCHHH----HHHHHHcCCcEEEEccCC-----CCCCCCchh-hHHHHHHHHHHccCCCcE
Q 019244 190 DVKWLQTI-TKLPILVKGV-LTAED----ARIAVQAGAAGIIVSNHG-----ARQLDYVPA-TIMALEEVVKATQGRIPV 257 (344)
Q Consensus 190 ~i~~i~~~-~~~PvivK~v-~~~~~----a~~~~~~G~d~I~v~~~g-----G~~~~~g~~-~~~~l~~i~~~~~~~~~v 257 (344)
.++..++. .+.|+++-.. .++++ ++.+.++|+|+|.+.-.. ++.+...+. ..+.+..+++.+ ++||
T Consensus 88 ~i~~~~~~~~~~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~--~~pv 165 (289)
T cd02810 88 DIAKAKKEFPGQPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAV--DIPL 165 (289)
T ss_pred HHHHHHhccCCCeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHcc--CCCE
Confidence 45554444 4789888765 34443 778889999999985321 121111111 234455555554 5777
Q ss_pred EE--ecCCC--CHHHHHHHH-HcCCCEEEEc
Q 019244 258 FL--DGGVR--RGTDVFKAL-ALGASGIFIG 283 (344)
Q Consensus 258 ia--~GGIr--~g~dv~kal-alGAd~V~ig 283 (344)
++ .+++. ...++++++ .+|||++.+.
T Consensus 166 ~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~~ 196 (289)
T cd02810 166 LVKLSPYFDLEDIVELAKAAERAGADGLTAI 196 (289)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 76 34443 334555554 4899999875
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of |
| >PRK06852 aldolase; Validated | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.19 Score=47.97 Aligned_cols=90 Identities=24% Similarity=0.257 Sum_probs=59.4
Q ss_pred HHHhcCCcEEE----Ee--e---cCH----HHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEe
Q 019244 194 LQTITKLPILV----KG--V---LTA----EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD 260 (344)
Q Consensus 194 i~~~~~~Pviv----K~--v---~~~----~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~ 260 (344)
-.+.|++|+++ ++ + ..+ .-++.+.+.|||.|++--.+ +.+....+.+.++.+.. +++||+.+
T Consensus 162 ea~~~GlPll~~~yprG~~i~~~~~~~~ia~aaRiaaELGADIVKv~y~~----~~~~g~~e~f~~vv~~~-g~vpVvia 236 (304)
T PRK06852 162 EAHKHGLIAVLWIYPRGKAVKDEKDPHLIAGAAGVAACLGADFVKVNYPK----KEGANPAELFKEAVLAA-GRTKVVCA 236 (304)
T ss_pred HHHHhCCcEEEEeeccCcccCCCccHHHHHHHHHHHHHHcCCEEEecCCC----cCCCCCHHHHHHHHHhC-CCCcEEEe
Confidence 33457999886 11 1 122 22688999999999995321 00012346677777654 37999999
Q ss_pred cCCCCH-HHHH----HHHH-cCCCEEEEchHHHH
Q 019244 261 GGVRRG-TDVF----KALA-LGASGIFIGRPVVY 288 (344)
Q Consensus 261 GGIr~g-~dv~----kala-lGAd~V~ig~~~l~ 288 (344)
||=... .|++ .++. .||..|.+||-++.
T Consensus 237 GG~k~~~~e~L~~v~~ai~~aGa~Gv~~GRNIfQ 270 (304)
T PRK06852 237 GGSSTDPEEFLKQLYEQIHISGASGNATGRNIHQ 270 (304)
T ss_pred CCCCCCHHHHHHHHHHHHHHcCCceeeechhhhc
Confidence 998853 3344 4666 89999999997764
|
|
| >TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.23 Score=47.83 Aligned_cols=95 Identities=15% Similarity=0.083 Sum_probs=62.8
Q ss_pred CCCCcHHH-HHHHHHh---cCCcEEEEeecC---HHHHHHHHHcC--CcEEEEccCCCCCCCCchhhHHHHHHHHHHccC
Q 019244 183 DRSLSWKD-VKWLQTI---TKLPILVKGVLT---AEDARIAVQAG--AAGIIVSNHGARQLDYVPATIMALEEVVKATQG 253 (344)
Q Consensus 183 ~~~~~~~~-i~~i~~~---~~~PvivK~v~~---~~~a~~~~~~G--~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~ 253 (344)
+..++.+. .+++++. ...-+.+-...+ .+-+..+.++| +|+|+++..-|+ ....++.+..+++..+
T Consensus 75 Hk~~~~e~~~~~v~~~~~~~~~~~~vsvG~~~~d~er~~~L~~a~~~~d~iviD~AhGh----s~~~i~~ik~ir~~~p- 149 (343)
T TIGR01305 75 HKHYSVDEWKAFATNSSPDCLQNVAVSSGSSDNDLEKMTSILEAVPQLKFICLDVANGY----SEHFVEFVKLVREAFP- 149 (343)
T ss_pred eeCCCHHHHHHHHHhhcccccceEEEEeccCHHHHHHHHHHHhcCCCCCEEEEECCCCc----HHHHHHHHHHHHhhCC-
Confidence 45566554 5555442 223333322223 35578888885 999999874342 2345677888877663
Q ss_pred CCcEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 019244 254 RIPVFLDGGVRRGTDVFKALALGASGIFIG 283 (344)
Q Consensus 254 ~~~via~GGIr~g~dv~kalalGAd~V~ig 283 (344)
. +.+..|.|-|++++..++.+|||+|-+|
T Consensus 150 ~-~~viaGNV~T~e~a~~Li~aGAD~ikVg 178 (343)
T TIGR01305 150 E-HTIMAGNVVTGEMVEELILSGADIVKVG 178 (343)
T ss_pred C-CeEEEecccCHHHHHHHHHcCCCEEEEc
Confidence 3 4555588999999999999999999776
|
A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences. |
| >cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA) | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.18 Score=48.24 Aligned_cols=92 Identities=23% Similarity=0.336 Sum_probs=59.6
Q ss_pred HHHHHcCCcEEEEccCCCCCCCCch-hhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHH----HcCCCEEEEchHHHH
Q 019244 214 RIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKAL----ALGASGIFIGRPVVY 288 (344)
Q Consensus 214 ~~~~~~G~d~I~v~~~gG~~~~~g~-~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kal----alGAd~V~ig~~~l~ 288 (344)
..+++.|+++|.+.|+-|-...-.. .-.+.+..+++.+.+++|||+.-|=.+-.|+++.. .+|||++++-.|+++
T Consensus 36 ~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~vlv~~P~y~ 115 (309)
T cd00952 36 ERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALLDLGADGTMLGRPMWL 115 (309)
T ss_pred HHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHHHHhCCCEEEECCCcCC
Confidence 4577899999999776443211111 12344555666667789999866655556665433 479999999999876
Q ss_pred HhhhcChHHHHHHHHHHHHH
Q 019244 289 SLAAEGEKGVRRVLEMLREE 308 (344)
Q Consensus 289 ~~~~~G~~~v~~~l~~l~~e 308 (344)
.. .++++.++++.+.+.
T Consensus 116 ~~---~~~~l~~yf~~va~a 132 (309)
T cd00952 116 PL---DVDTAVQFYRDVAEA 132 (309)
T ss_pred CC---CHHHHHHHHHHHHHh
Confidence 53 356666666665543
|
HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases. |
| >PRK00208 thiG thiazole synthase; Reviewed | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.33 Score=44.75 Aligned_cols=114 Identities=23% Similarity=0.254 Sum_probs=69.9
Q ss_pred HHHHHHHHHcCC-cc----ccCCHH----HHHHHHHHHHHc---CCcEEEeccCCccccccHHHHHhhcCCCCccccccc
Q 019244 91 YATARAASAAGT-IM----VYKDRN----VVAQLVRRAERA---GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNF 158 (344)
Q Consensus 91 ~~lA~aA~~~g~-~~----~~~d~~----~~~~~i~~a~~a---g~~~l~~tvd~~~~g~r~~~~~~~~~~~~g~~~~~~ 158 (344)
..+|+-|++... .. +..|+. ...+.+++++.. ||..+-+..|.+....+-.+..-.+-.|.|
T Consensus 79 v~~a~lare~~~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~~~ak~l~~~G~~~vmPlg------ 152 (250)
T PRK00208 79 VRTARLAREALGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEEAGCAAVMPLG------ 152 (250)
T ss_pred HHHHHHHHHHhCCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCCEeCCCC------
Confidence 456776666543 33 223322 123456677766 999887777877776554433100000100
Q ss_pred ccccccccccccchhhHHHHhhcCCCCCcHHHHHHHHHhcCCcEEEEe-ecCHHHHHHHHHcCCcEEEEcc
Q 019244 159 QGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSN 228 (344)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~PvivK~-v~~~~~a~~~~~~G~d~I~v~~ 228 (344)
+.+.. +.+-.+++.++.+++..++||++-+ +.+++++.++.+.|+|++.|.+
T Consensus 153 -----------------~pIGs-g~gi~~~~~i~~i~e~~~vpVIveaGI~tpeda~~AmelGAdgVlV~S 205 (250)
T PRK00208 153 -----------------APIGS-GLGLLNPYNLRIIIEQADVPVIVDAGIGTPSDAAQAMELGADAVLLNT 205 (250)
T ss_pred -----------------cCCCC-CCCCCCHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEECh
Confidence 00110 1112246779999998889999876 5799999999999999999854
|
|
| >COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.23 Score=47.42 Aligned_cols=92 Identities=25% Similarity=0.390 Sum_probs=58.8
Q ss_pred HHHHHcCCcEEEEccCCCCCCCCch-hhHHHHHHHHHHccCCCcEEEecCCCCHHHHH----HHHHcCCCEEEEchHHHH
Q 019244 214 RIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVF----KALALGASGIFIGRPVVY 288 (344)
Q Consensus 214 ~~~~~~G~d~I~v~~~gG~~~~~g~-~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~----kalalGAd~V~ig~~~l~ 288 (344)
+.+++.|+|+|.+.|+.|-...-.. .-.+.+..+++.+.+++|||+.-|=.+-.+++ .|-.+|||++++-.|+++
T Consensus 32 ~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~~~Gad~il~v~PyY~ 111 (299)
T COG0329 32 EFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAEKLGADGILVVPPYYN 111 (299)
T ss_pred HHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHHHhcCCCEEEEeCCCCc
Confidence 4578999999999876553211111 12345566666777789999955555445544 334489999999999987
Q ss_pred HhhhcChHHHHHHHHHHHHH
Q 019244 289 SLAAEGEKGVRRVLEMLREE 308 (344)
Q Consensus 289 ~~~~~G~~~v~~~l~~l~~e 308 (344)
.. .++++.+++..+.+.
T Consensus 112 k~---~~~gl~~hf~~ia~a 128 (299)
T COG0329 112 KP---SQEGLYAHFKAIAEA 128 (299)
T ss_pred CC---ChHHHHHHHHHHHHh
Confidence 53 245555555544433
|
|
| >cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.43 Score=43.12 Aligned_cols=92 Identities=15% Similarity=0.129 Sum_probs=60.7
Q ss_pred cHHHHHHHHHhcCCcEEE---Eee--------cCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCC
Q 019244 187 SWKDVKWLQTITKLPILV---KGV--------LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRI 255 (344)
Q Consensus 187 ~~~~i~~i~~~~~~Pviv---K~v--------~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~ 255 (344)
+.+.++++++..++|++. |.. .+.++++.+.++|+|+|.+.....+ ...+....+.+..+++.. ++
T Consensus 48 ~~~~~~~i~~~~~iPil~~~~~~~~~~~~~ig~~~~~~~~a~~aGad~I~~~~~~~~-~p~~~~~~~~i~~~~~~g--~~ 124 (219)
T cd04729 48 GVEDIRAIRARVDLPIIGLIKRDYPDSEVYITPTIEEVDALAAAGADIIALDATDRP-RPDGETLAELIKRIHEEY--NC 124 (219)
T ss_pred CHHHHHHHHHhCCCCEEEEEecCCCCCCceeCCCHHHHHHHHHcCCCEEEEeCCCCC-CCCCcCHHHHHHHHHHHh--CC
Confidence 346788888878999863 222 1346889999999998877532111 001112233444444432 56
Q ss_pred cEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 019244 256 PVFLDGGVRRGTDVFKALALGASGIFIG 283 (344)
Q Consensus 256 ~via~GGIr~g~dv~kalalGAd~V~ig 283 (344)
+++. ++.|.+++.++..+|+|.+.+.
T Consensus 125 ~iiv--~v~t~~ea~~a~~~G~d~i~~~ 150 (219)
T cd04729 125 LLMA--DISTLEEALNAAKLGFDIIGTT 150 (219)
T ss_pred eEEE--ECCCHHHHHHHHHcCCCEEEcc
Confidence 7666 6899999999999999998653
|
This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates. |
| >PRK07807 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.12 Score=52.49 Aligned_cols=67 Identities=21% Similarity=0.298 Sum_probs=53.5
Q ss_pred HHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 019244 211 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 283 (344)
Q Consensus 211 ~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig 283 (344)
+.++.+.++|+|.|.++.+-|. +...++.+.++++..+ +++||+ |.|.|.+.+..++.+|||+|-+|
T Consensus 230 ~~a~~Lv~aGvd~i~~D~a~~~----~~~~~~~i~~ik~~~p-~~~v~a-gnv~t~~~a~~l~~aGad~v~vg 296 (479)
T PRK07807 230 AKARALLEAGVDVLVVDTAHGH----QEKMLEALRAVRALDP-GVPIVA-GNVVTAEGTRDLVEAGADIVKVG 296 (479)
T ss_pred HHHHHHHHhCCCEEEEeccCCc----cHHHHHHHHHHHHHCC-CCeEEe-eccCCHHHHHHHHHcCCCEEEEC
Confidence 5578899999999999865442 4556778888887663 576666 89999999999999999997743
|
|
| >cd00439 Transaldolase Transaldolase | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.51 Score=43.93 Aligned_cols=95 Identities=12% Similarity=0.021 Sum_probs=65.5
Q ss_pred HHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCch-------------hhHHHHHHHHHHc---cC
Q 019244 190 DVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVP-------------ATIMALEEVVKAT---QG 253 (344)
Q Consensus 190 ~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~-------------~~~~~l~~i~~~~---~~ 253 (344)
.++.+.+. ++++-+=.+.|.+.+..+.++|+++|... -||-.+++. +.+..+.++.+.. ..
T Consensus 131 A~~~L~~~-GI~vn~T~vfs~~Qa~~aa~Aga~~ispf--vgRid~~~~~~~~~~~~d~~~~~gi~~~~~~~~~~~~~~~ 207 (252)
T cd00439 131 AIKDLIAA-GISVNVTLIFSIAQYEAVADAGTSVASPF--VSRIDTLMDKMLEQIGLDLRGKAGVAQVTLAYKLYKQKFK 207 (252)
T ss_pred HHHHHHHC-CCceeeeeecCHHHHHHHHHcCCCEEEEe--ccHHHHHhhhhccccccccccCcHHHHHHHHHHHHHHhCC
Confidence 44555443 89998888999999999999999988764 233222222 4444444554433 23
Q ss_pred CCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHh
Q 019244 254 RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSL 290 (344)
Q Consensus 254 ~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~ 290 (344)
+..|++. .+|+..++.+++ |+|.|-+.-.++..+
T Consensus 208 ~tkiL~A-S~r~~~~v~~l~--G~d~vT~~p~v~~~l 241 (252)
T cd00439 208 KQRVLWA-SFSDTLYVAPLI--GCDTVTTMPDQALEA 241 (252)
T ss_pred CCeEEEE-eeCCHHHHHHhh--CCCeeecCHHHHHHH
Confidence 5666654 499999998766 999999988887754
|
Enzymes found in the non-oxidative branch of the pentose phosphate pathway, that catalyze the reversible transfer of a dihydroxyacetone group from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. They are members of the class I aldolases, who are characterized by using a Schiff-base mechanism for stabilization of the reaction intermediates. |
| >cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.22 Score=47.52 Aligned_cols=94 Identities=18% Similarity=0.224 Sum_probs=63.0
Q ss_pred HHHHHHHHhcC--CcEEEEeecCHH----HHHHHHHc---CCcEEEEccCCCCCCCCchhhHHHHHHHHHH---cc-CCC
Q 019244 189 KDVKWLQTITK--LPILVKGVLTAE----DARIAVQA---GAAGIIVSNHGARQLDYVPATIMALEEVVKA---TQ-GRI 255 (344)
Q Consensus 189 ~~i~~i~~~~~--~PvivK~v~~~~----~a~~~~~~---G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~---~~-~~~ 255 (344)
+.++.+++..+ .|+++ ++.+.+ ++..+.++ ++|.|-++|.+++ .| .+.+.+.+++++ .+ +++
T Consensus 172 ~A~~~~~~~~p~~~~i~v-evdt~~~~v~eal~~~~~~~~~~d~I~lDn~~~~---~G-~~~~~~~~~~~~l~~~g~~~~ 246 (302)
T cd01571 172 EAWKAFDETYPEDVPRIA-LIDTFNDEKEEALKAAKALGDKLDGVRLDTPSSR---RG-VFRYLIREVRWALDIRGYKHV 246 (302)
T ss_pred HHHHHHHHHCCCcCCeEE-EEeecCcchHHHHHHHHHhCCCCcEEEECCCCCC---CC-CHHHHHHHHHHHHHhCCCCCe
Confidence 35777777765 45544 454443 56666666 4899999986532 11 123334444443 32 468
Q ss_pred cEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 256 PVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 256 ~via~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
.|++|||| +...+.+....|+|.+.+|+....
T Consensus 247 ~ieaSGgI-~~~~i~~~a~~gvD~isvGs~~~~ 278 (302)
T cd01571 247 KIFVSGGL-DEEDIKELEDVGVDAFGVGTAISK 278 (302)
T ss_pred EEEEeCCC-CHHHHHHHHHcCCCEEECCcccCC
Confidence 89999999 689999988999999999987643
|
Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products. |
| >PRK13111 trpA tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.24 Score=46.22 Aligned_cols=40 Identities=33% Similarity=0.294 Sum_probs=33.9
Q ss_pred HHHHHHHHHhcCCcEEEEee-cCHHHHHHHHHcCCcEEEEcc
Q 019244 188 WKDVKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSN 228 (344)
Q Consensus 188 ~~~i~~i~~~~~~PvivK~v-~~~~~a~~~~~~G~d~I~v~~ 228 (344)
.+.++.+++.+++|+++... .++++++.+.+. +|+++|.+
T Consensus 189 ~~~i~~vk~~~~~pv~vGfGI~~~e~v~~~~~~-ADGviVGS 229 (258)
T PRK13111 189 AELVARLKAHTDLPVAVGFGISTPEQAAAIAAV-ADGVIVGS 229 (258)
T ss_pred HHHHHHHHhcCCCcEEEEcccCCHHHHHHHHHh-CCEEEEcH
Confidence 34799999988999999764 689999999986 99999953
|
|
| >PRK14057 epimerase; Provisional | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.52 Score=43.84 Aligned_cols=94 Identities=11% Similarity=0.148 Sum_probs=60.0
Q ss_pred HHHHHHHHhcCCc-------EEEEee----cCHHHHHHHHHcCCcEEEEcc----CCCCCCCCchhhHHHHHHHHHHcc-
Q 019244 189 KDVKWLQTITKLP-------ILVKGV----LTAEDARIAVQAGAAGIIVSN----HGARQLDYVPATIMALEEVVKATQ- 252 (344)
Q Consensus 189 ~~i~~i~~~~~~P-------vivK~v----~~~~~a~~~~~~G~d~I~v~~----~gG~~~~~g~~~~~~l~~i~~~~~- 252 (344)
..+++||+. +++ +-+..+ .+.+..+..++. +|.|.+=. .||. ..-+..++-+.++++...
T Consensus 114 ~~l~~Ir~~-G~k~~~~~~~~kaGlAlnP~Tp~e~i~~~l~~-vD~VLvMtV~PGfgGQ--~Fi~~~l~KI~~lr~~~~~ 189 (254)
T PRK14057 114 HTLSWLGQQ-TVPVIGGEMPVIRGISLCPATPLDVIIPILSD-VEVIQLLAVNPGYGSK--MRSSDLHERVAQLLCLLGD 189 (254)
T ss_pred HHHHHHHHc-CCCcccccccceeEEEECCCCCHHHHHHHHHh-CCEEEEEEECCCCCch--hccHHHHHHHHHHHHHHHh
Confidence 467888876 432 222222 345667766664 88877642 2332 233445555555554432
Q ss_pred --CCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHH
Q 019244 253 --GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 287 (344)
Q Consensus 253 --~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l 287 (344)
.++.|-+||||. .+.+.++.++|||.+.+|+.++
T Consensus 190 ~~~~~~IeVDGGI~-~~ti~~l~~aGad~~V~GSalF 225 (254)
T PRK14057 190 KREGKIIVIDGSLT-QDQLPSLIAQGIDRVVSGSALF 225 (254)
T ss_pred cCCCceEEEECCCC-HHHHHHHHHCCCCEEEEChHhh
Confidence 257799999998 5678888999999999998764
|
|
| >TIGR00734 hisAF_rel hisA/hisF family protein | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.14 Score=46.66 Aligned_cols=72 Identities=18% Similarity=0.175 Sum_probs=54.5
Q ss_pred HHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHH--cCCCEEEEchHHH
Q 019244 210 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA--LGASGIFIGRPVV 287 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kala--lGAd~V~ig~~~l 287 (344)
.+.|+...+.|+|.+.+..--+. ...+...+.+.++.+. +|+...|||||.+|+.+++. .||+-|.+|+..+
T Consensus 39 ~~~a~~~~~~g~~~l~ivDLd~~--~~~~~n~~~i~~i~~~----~~v~vgGGirs~e~~~~~~~~l~~a~rvvigT~a~ 112 (221)
T TIGR00734 39 DDAAKVIEEIGARFIYIADLDRI--VGLGDNFSLLSKLSKR----VELIADCGVRSPEDLETLPFTLEFASRVVVATETL 112 (221)
T ss_pred HHHHHHHHHcCCCEEEEEEcccc--cCCcchHHHHHHHHhh----CcEEEcCccCCHHHHHHHHhhhccceEEeecChhh
Confidence 46678888999999988542221 1234567778887763 58999999999999998865 2799999999764
|
This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown. |
| >TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.15 Score=51.74 Aligned_cols=68 Identities=24% Similarity=0.311 Sum_probs=54.1
Q ss_pred HHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 019244 210 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 283 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig 283 (344)
.+-++.+.++|+|.|+++.+-|+. ....+.+.++++.. .++|||+ |.+-|.+.+..++.+|||+|-+|
T Consensus 227 ~~ra~~Lv~aGVd~i~~D~a~g~~----~~~~~~i~~i~~~~-~~~~vi~-g~~~t~~~~~~l~~~G~d~i~vg 294 (475)
T TIGR01303 227 GGKAKALLDAGVDVLVIDTAHGHQ----VKMISAIKAVRALD-LGVPIVA-GNVVSAEGVRDLLEAGANIIKVG 294 (475)
T ss_pred HHHHHHHHHhCCCEEEEeCCCCCc----HHHHHHHHHHHHHC-CCCeEEE-eccCCHHHHHHHHHhCCCEEEEC
Confidence 356888999999999998744542 34567778887654 3799999 76999999999999999998755
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302. |
| >COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.11 Score=46.66 Aligned_cols=80 Identities=29% Similarity=0.289 Sum_probs=57.3
Q ss_pred cHHHHHHHHHhcC-CcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCC
Q 019244 187 SWKDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 265 (344)
Q Consensus 187 ~~~~i~~i~~~~~-~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~ 265 (344)
..+.|+.+++.++ .-+....++++++++++.++|+++|+--|. +.+.+..+. ..++|++ =|+-|
T Consensus 51 a~e~I~~l~~~~p~~lIGAGTVL~~~q~~~a~~aGa~fiVsP~~----------~~ev~~~a~---~~~ip~~--PG~~T 115 (211)
T COG0800 51 ALEAIRALAKEFPEALIGAGTVLNPEQARQAIAAGAQFIVSPGL----------NPEVAKAAN---RYGIPYI--PGVAT 115 (211)
T ss_pred HHHHHHHHHHhCcccEEccccccCHHHHHHHHHcCCCEEECCCC----------CHHHHHHHH---hCCCccc--CCCCC
Confidence 3467999999885 444455579999999999999999953221 223333222 2256665 48999
Q ss_pred HHHHHHHHHcCCCEEE
Q 019244 266 GTDVFKALALGASGIF 281 (344)
Q Consensus 266 g~dv~kalalGAd~V~ 281 (344)
+.++..|+.+|++.+=
T Consensus 116 ptEi~~Ale~G~~~lK 131 (211)
T COG0800 116 PTEIMAALELGASALK 131 (211)
T ss_pred HHHHHHHHHcChhhee
Confidence 9999999999998763
|
|
| >TIGR00683 nanA N-acetylneuraminate lyase | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.3 Score=46.34 Aligned_cols=92 Identities=11% Similarity=0.148 Sum_probs=58.7
Q ss_pred HHHHHHcC-CcEEEEccCCCCCCCCchh-hHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHcCCCEEEEchHH
Q 019244 213 ARIAVQAG-AAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPV 286 (344)
Q Consensus 213 a~~~~~~G-~d~I~v~~~gG~~~~~g~~-~~~~l~~i~~~~~~~~~via~GGIr~g~dv~k----alalGAd~V~ig~~~ 286 (344)
++.+++.| +++|.+.|+-|-...-... -.+.+..+++...+++||++.=|=.+-.|+++ +-.+|||+|++..|+
T Consensus 27 i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~la~~a~~~Gad~v~v~~P~ 106 (290)
T TIGR00683 27 IRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGYDCLSAVTPF 106 (290)
T ss_pred HHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence 45678899 9999998765532211121 22345555666667899988644344555543 344799999999998
Q ss_pred HHHhhhcChHHHHHHHHHHHH
Q 019244 287 VYSLAAEGEKGVRRVLEMLRE 307 (344)
Q Consensus 287 l~~~~~~G~~~v~~~l~~l~~ 307 (344)
++.. .++++.++++.+.+
T Consensus 107 y~~~---~~~~i~~yf~~v~~ 124 (290)
T TIGR00683 107 YYKF---SFPEIKHYYDTIIA 124 (290)
T ss_pred CCCC---CHHHHHHHHHHHHh
Confidence 7753 34666666666544
|
N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate. |
| >PRK07565 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.35 Score=46.76 Aligned_cols=95 Identities=20% Similarity=0.206 Sum_probs=60.3
Q ss_pred HHHHHHHHhcCCcEEEEee-cCH----HHHHHHHHcCCcEEEEcc---CCCCCCCCc-h--hhHHHHHHHHHHccCCCcE
Q 019244 189 KDVKWLQTITKLPILVKGV-LTA----EDARIAVQAGAAGIIVSN---HGARQLDYV-P--ATIMALEEVVKATQGRIPV 257 (344)
Q Consensus 189 ~~i~~i~~~~~~PvivK~v-~~~----~~a~~~~~~G~d~I~v~~---~gG~~~~~g-~--~~~~~l~~i~~~~~~~~~v 257 (344)
+.++.+++..++|++++.. .+. +.++.+.++|+|+|.+-- .+.....+. . ...+.+..+++.. ++||
T Consensus 91 ~~i~~~~~~~~~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~--~iPV 168 (334)
T PRK07565 91 ELIRRAKEAVDIPVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAV--SIPV 168 (334)
T ss_pred HHHHHHHHhcCCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhcc--CCcE
Confidence 3566666667899999985 344 346778889999999831 111111111 1 1234556666554 6899
Q ss_pred EEe--cCCCCHHHHHHHHH-cCCCEEEEchH
Q 019244 258 FLD--GGVRRGTDVFKALA-LGASGIFIGRP 285 (344)
Q Consensus 258 ia~--GGIr~g~dv~kala-lGAd~V~ig~~ 285 (344)
++- +++.+..++++++. .|||+|.+...
T Consensus 169 ~vKl~p~~~~~~~~a~~l~~~G~dgI~~~n~ 199 (334)
T PRK07565 169 AVKLSPYFSNLANMAKRLDAAGADGLVLFNR 199 (334)
T ss_pred EEEeCCCchhHHHHHHHHHHcCCCeEEEECC
Confidence 874 45556678888765 89999877543
|
|
| >TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.28 Score=46.62 Aligned_cols=92 Identities=20% Similarity=0.316 Sum_probs=59.6
Q ss_pred HHHHHHcCCcEEEEccCCCCCCCCchh-hHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHcCCCEEEEchHHH
Q 019244 213 ARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 287 (344)
Q Consensus 213 a~~~~~~G~d~I~v~~~gG~~~~~g~~-~~~~l~~i~~~~~~~~~via~GGIr~g~dv~k----alalGAd~V~ig~~~l 287 (344)
++.+.+.|+|+|.+.|+-|-...-... -.+.+..+.+.+.+++||++.=| .+-.++++ +-.+|||++++-.|++
T Consensus 32 i~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~-~~t~~ai~~a~~a~~~Gadav~~~pP~y 110 (296)
T TIGR03249 32 IEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVG-GNTSDAIEIARLAEKAGADGYLLLPPYL 110 (296)
T ss_pred HHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC-ccHHHHHHHHHHHHHhCCCEEEECCCCC
Confidence 345778999999997765532222222 22345556666677899998656 35555543 3347999999999988
Q ss_pred HHhhhcChHHHHHHHHHHHHH
Q 019244 288 YSLAAEGEKGVRRVLEMLREE 308 (344)
Q Consensus 288 ~~~~~~G~~~v~~~l~~l~~e 308 (344)
+.. .++++.++++.+.+.
T Consensus 111 ~~~---s~~~i~~~f~~v~~a 128 (296)
T TIGR03249 111 ING---EQEGLYAHVEAVCES 128 (296)
T ss_pred CCC---CHHHHHHHHHHHHhc
Confidence 642 356666666666554
|
5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate. |
| >TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.42 Score=46.03 Aligned_cols=78 Identities=13% Similarity=0.048 Sum_probs=57.4
Q ss_pred CcEEEEeecCHH---HHHHHHHcC--CcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHH
Q 019244 200 LPILVKGVLTAE---DARIAVQAG--AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 274 (344)
Q Consensus 200 ~PvivK~v~~~~---~a~~~~~~G--~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kala 274 (344)
+++.+-...+++ .+..+.++| +|.|+++..-|+ ....++.+.++++.. ..|.+..|.|-+.+++..++.
T Consensus 83 L~v~~SvG~t~e~~~r~~~lv~a~~~~d~i~~D~ahg~----s~~~~~~i~~i~~~~--p~~~vi~GnV~t~e~a~~l~~ 156 (321)
T TIGR01306 83 LFASISVGVKACEYEFVTQLAEEALTPEYITIDIAHGH----SNSVINMIKHIKTHL--PDSFVIAGNVGTPEAVRELEN 156 (321)
T ss_pred cEEEEEcCCCHHHHHHHHHHHhcCCCCCEEEEeCccCc----hHHHHHHHHHHHHhC--CCCEEEEecCCCHHHHHHHHH
Confidence 444433334554 467788999 799999873332 234567788887766 568888899999999999999
Q ss_pred cCCCEEEEc
Q 019244 275 LGASGIFIG 283 (344)
Q Consensus 275 lGAd~V~ig 283 (344)
.|||+|-+|
T Consensus 157 aGad~I~V~ 165 (321)
T TIGR01306 157 AGADATKVG 165 (321)
T ss_pred cCcCEEEEC
Confidence 999999877
|
A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages. |
| >COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.34 Score=43.44 Aligned_cols=89 Identities=17% Similarity=0.126 Sum_probs=62.8
Q ss_pred cHHHHHHHHHhcCCcEE--EEee---------cCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCC
Q 019244 187 SWKDVKWLQTITKLPIL--VKGV---------LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRI 255 (344)
Q Consensus 187 ~~~~i~~i~~~~~~Pvi--vK~v---------~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~ 255 (344)
..++|+.+++.+++|+| +|-- .+.++...+.++|++.|-++.+-.. ...| +++.+ .+..+ .-
T Consensus 54 gv~dIkai~~~v~vPIIGIiKrd~~~s~v~ITptlkeVd~L~~~Ga~IIA~DaT~R~-RP~~--~~~~~---i~~~k-~~ 126 (229)
T COG3010 54 GVEDIKAIRAVVDVPIIGIIKRDYPDSPVRITPTLKEVDALAEAGADIIAFDATDRP-RPDG--DLEEL---IARIK-YP 126 (229)
T ss_pred chhhHHHHHhhCCCCeEEEEecCCCCCCceecccHHHHHHHHHCCCcEEEeecccCC-CCcc--hHHHH---HHHhh-cC
Confidence 56789999999999985 4431 4568999999999999998764321 1112 33322 22221 33
Q ss_pred cEEEecCCCCHHHHHHHHHcCCCEEEE
Q 019244 256 PVFLDGGVRRGTDVFKALALGASGIFI 282 (344)
Q Consensus 256 ~via~GGIr~g~dv~kalalGAd~V~i 282 (344)
..++.-.+.|.+|..-|..+|+|.|+-
T Consensus 127 ~~l~MAD~St~ee~l~a~~~G~D~IGT 153 (229)
T COG3010 127 GQLAMADCSTFEEGLNAHKLGFDIIGT 153 (229)
T ss_pred CcEEEeccCCHHHHHHHHHcCCcEEec
Confidence 456667789999999999999999753
|
|
| >PRK13957 indole-3-glycerol-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.41 Score=44.37 Aligned_cols=71 Identities=23% Similarity=0.258 Sum_probs=55.7
Q ss_pred HHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHH
Q 019244 211 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 287 (344)
Q Consensus 211 ~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l 287 (344)
+.|+...++||.+|-|-.-+.. -..+++.|..+++.+ ++||+.-..|-+..++.++.++|||+|.+=-.++
T Consensus 65 ~~A~~y~~~GA~aISVlTe~~~----F~Gs~~~l~~v~~~v--~~PvL~KDFIid~~QI~ea~~~GADavLLI~~~L 135 (247)
T PRK13957 65 QIAKTYETLGASAISVLTDQSY----FGGSLEDLKSVSSEL--KIPVLRKDFILDEIQIREARAFGASAILLIVRIL 135 (247)
T ss_pred HHHHHHHHCCCcEEEEEcCCCc----CCCCHHHHHHHHHhc--CCCEEeccccCCHHHHHHHHHcCCCEEEeEHhhC
Confidence 5578899999999988653211 112467788888776 7999999999999999999999999997655443
|
|
| >PLN02460 indole-3-glycerol-phosphate synthase | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.2 Score=48.46 Aligned_cols=91 Identities=20% Similarity=0.286 Sum_probs=71.1
Q ss_pred cHHHHHHHHHh-cCCcEEEEe-ecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCC
Q 019244 187 SWKDVKWLQTI-TKLPILVKG-VLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 264 (344)
Q Consensus 187 ~~~~i~~i~~~-~~~PvivK~-v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr 264 (344)
++++++.+|+. +++||+.|. +.++.+...+..+|||+|-+.-.- + ....+..|.+.+..+ .+.+++. |+
T Consensus 168 s~e~L~~vr~~~v~lPvLrKDFIID~yQI~eAr~~GADAVLLIaai---L--~~~~L~~l~~~A~~L--Gme~LVE--VH 238 (338)
T PLN02460 168 SFENLEAIRNAGVKCPLLCKEFIVDAWQIYYARSKGADAILLIAAV---L--PDLDIKYMLKICKSL--GMAALIE--VH 238 (338)
T ss_pred CHHHHHHHHHcCCCCCEeeccccCCHHHHHHHHHcCCCcHHHHHHh---C--CHHHHHHHHHHHHHc--CCeEEEE--eC
Confidence 68899999998 899999998 589999999999999999763210 1 123455566666555 5666664 89
Q ss_pred CHHHHHHHHHc-CCCEEEEchHH
Q 019244 265 RGTDVFKALAL-GASGIFIGRPV 286 (344)
Q Consensus 265 ~g~dv~kalal-GAd~V~ig~~~ 286 (344)
+..++-+++.+ ||+.++|-.-=
T Consensus 239 ~~~ElerAl~~~ga~iIGINNRd 261 (338)
T PLN02460 239 DEREMDRVLGIEGVELIGINNRS 261 (338)
T ss_pred CHHHHHHHHhcCCCCEEEEeCCC
Confidence 99999999998 99999987643
|
|
| >cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.38 Score=45.16 Aligned_cols=95 Identities=20% Similarity=0.178 Sum_probs=63.1
Q ss_pred HHHHHHHHhcCCcEEEEe---ecCHHHHHHHHHcC-CcEEEEccCCCCCCCCchhhHHHHHHHHHHc----cCCCcEEEe
Q 019244 189 KDVKWLQTITKLPILVKG---VLTAEDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKAT----QGRIPVFLD 260 (344)
Q Consensus 189 ~~i~~i~~~~~~PvivK~---v~~~~~a~~~~~~G-~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~----~~~~~via~ 260 (344)
+.++.+++..+.|...|. +.+.+++..+.++| +|+|-+++.... ...+....+. ..+.+ ..++.|+++
T Consensus 170 ~a~~~~~~~~~~~~~~~idve~~~~~~~~~~~~~~~~d~irlDs~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~i~~S 245 (281)
T cd00516 170 AAVKALRRWLPELFIALIDVEVDTLEEALEAAKAGGADGIRLDSGSPE---ELDPAVLILK-ARAHLDGKGLPRVKIEAS 245 (281)
T ss_pred HHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHhcCCCCEEEeCCCChH---HHHHHHHHHH-HHHhhhhcCCCceEEEEe
Confidence 457777776543344443 35689999999999 999998874321 1112222221 21111 136789999
Q ss_pred cCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 261 GGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 261 GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
|||. .+.+......|.|.+++|+.+..
T Consensus 246 ggi~-~~~i~~~~~~gvd~~gvG~~~~~ 272 (281)
T cd00516 246 GGLD-EENIRAYAETGVDVFGVGTLLHS 272 (281)
T ss_pred CCCC-HHHHHHHHHcCCCEEEeCccccc
Confidence 9997 88888888899999999987753
|
QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway. |
| >cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.15 Score=45.94 Aligned_cols=72 Identities=24% Similarity=0.290 Sum_probs=54.1
Q ss_pred HHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHH
Q 019244 210 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 287 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l 287 (344)
.+.|+...++|+++|.+-.-.+. .. ...+.+..+++.+ ++||+.-|+|++..++-.++.+|||.|.++.+.+
T Consensus 34 ~~~A~~~~~~GA~~l~v~~~~~~-~~---g~~~~~~~i~~~v--~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~ 105 (217)
T cd00331 34 VEIAKAYEKAGAAAISVLTEPKY-FQ---GSLEDLRAVREAV--SLPVLRKDFIIDPYQIYEARAAGADAVLLIVAAL 105 (217)
T ss_pred HHHHHHHHHcCCCEEEEEeCccc-cC---CCHHHHHHHHHhc--CCCEEECCeecCHHHHHHHHHcCCCEEEEeeccC
Confidence 36689999999999988532111 11 1235566666655 7999999999999999999999999999887543
|
IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis. |
| >PRK04147 N-acetylneuraminate lyase; Provisional | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.35 Score=45.80 Aligned_cols=92 Identities=16% Similarity=0.261 Sum_probs=59.6
Q ss_pred HHHHHH-cCCcEEEEccCCCCCCCCch-hhHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHcCCCEEEEchHH
Q 019244 213 ARIAVQ-AGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPV 286 (344)
Q Consensus 213 a~~~~~-~G~d~I~v~~~gG~~~~~g~-~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~k----alalGAd~V~ig~~~ 286 (344)
++.+.+ .|+++|.+.|+-|-...-.. .-...+..+++...+++|||+.=|=.+-.|+++ +-.+|||+|++-.|+
T Consensus 30 i~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~~~t~~ai~~a~~a~~~Gad~v~v~~P~ 109 (293)
T PRK04147 30 VRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVGSVNTAEAQELAKYATELGYDAISAVTPF 109 (293)
T ss_pred HHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCCCCCHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 345778 99999999876553221111 123445556666677899999655555666643 346899999999999
Q ss_pred HHHhhhcChHHHHHHHHHHHH
Q 019244 287 VYSLAAEGEKGVRRVLEMLRE 307 (344)
Q Consensus 287 l~~~~~~G~~~v~~~l~~l~~ 307 (344)
++.. .++++.++++.+.+
T Consensus 110 y~~~---~~~~l~~~f~~va~ 127 (293)
T PRK04147 110 YYPF---SFEEICDYYREIID 127 (293)
T ss_pred CCCC---CHHHHHHHHHHHHH
Confidence 7642 24555555555544
|
|
| >PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.39 Score=46.30 Aligned_cols=67 Identities=15% Similarity=0.118 Sum_probs=50.2
Q ss_pred HHHHHHHH--cCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 019244 211 EDARIAVQ--AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 283 (344)
Q Consensus 211 ~~a~~~~~--~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig 283 (344)
+-+..+.+ +|+|+|+++..-|+ ....++.+.++++..+ +++||+ |.|-|++-+...+..|||+|=+|
T Consensus 111 er~~~L~~~~~g~D~iviD~AhGh----s~~~i~~ik~ik~~~P-~~~vIa-GNV~T~e~a~~Li~aGAD~vKVG 179 (346)
T PRK05096 111 EKTKQILALSPALNFICIDVANGY----SEHFVQFVAKAREAWP-DKTICA-GNVVTGEMVEELILSGADIVKVG 179 (346)
T ss_pred HHHHHHHhcCCCCCEEEEECCCCc----HHHHHHHHHHHHHhCC-CCcEEE-ecccCHHHHHHHHHcCCCEEEEc
Confidence 44677777 59999999874332 2345677888887764 677665 99999999888888999998544
|
|
| >PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.21 Score=48.22 Aligned_cols=67 Identities=16% Similarity=0.113 Sum_probs=50.0
Q ss_pred HHHHHHHHcCC--cEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 019244 211 EDARIAVQAGA--AGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 283 (344)
Q Consensus 211 ~~a~~~~~~G~--d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig 283 (344)
+.+..+.++|+ |.|.++..-| .+....+.+.++++..+ ++||++ |.|.|.+++..++.+|||++.+|
T Consensus 100 ~~~~~Lv~ag~~~d~i~iD~a~g----h~~~~~e~I~~ir~~~p-~~~vi~-g~V~t~e~a~~l~~aGad~i~vg 168 (326)
T PRK05458 100 DFVDQLAAEGLTPEYITIDIAHG----HSDSVINMIQHIKKHLP-ETFVIA-GNVGTPEAVRELENAGADATKVG 168 (326)
T ss_pred HHHHHHHhcCCCCCEEEEECCCC----chHHHHHHHHHHHhhCC-CCeEEE-EecCCHHHHHHHHHcCcCEEEEC
Confidence 55788999965 9999975323 22445567888877652 466555 66889999999999999998877
|
|
| >TIGR00674 dapA dihydrodipicolinate synthase | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.42 Score=45.06 Aligned_cols=93 Identities=20% Similarity=0.345 Sum_probs=59.4
Q ss_pred HHHHHHcCCcEEEEccCCCCCCCCchh-hHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHcCCCEEEEchHHH
Q 019244 213 ARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 287 (344)
Q Consensus 213 a~~~~~~G~d~I~v~~~gG~~~~~g~~-~~~~l~~i~~~~~~~~~via~GGIr~g~dv~k----alalGAd~V~ig~~~l 287 (344)
+..+.+.|+++|.+.|+-|-...-... -.+.+..+.+.+.+++||++.=|=.+-.++++ |-.+|||+|++..|++
T Consensus 25 i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~Gad~v~v~pP~y 104 (285)
T TIGR00674 25 IDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGSNATEEAISLTKFAEDVGADGFLVVTPYY 104 (285)
T ss_pred HHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCccHHHHHHHHHHHHHcCCCEEEEcCCcC
Confidence 345778999999997765532221221 23345556666667899998655555666553 3347999999999998
Q ss_pred HHhhhcChHHHHHHHHHHHHH
Q 019244 288 YSLAAEGEKGVRRVLEMLREE 308 (344)
Q Consensus 288 ~~~~~~G~~~v~~~l~~l~~e 308 (344)
+.. .++++.++++.+.+.
T Consensus 105 ~~~---~~~~i~~~~~~i~~~ 122 (285)
T TIGR00674 105 NKP---TQEGLYQHFKAIAEE 122 (285)
T ss_pred CCC---CHHHHHHHHHHHHhc
Confidence 743 345666666555443
|
Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment. |
| >PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.32 Score=45.86 Aligned_cols=92 Identities=20% Similarity=0.316 Sum_probs=57.2
Q ss_pred HHHHHHHcCCcEEEEccCCCCCCCCchh-hHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHcCCCEEEEchHH
Q 019244 212 DARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPV 286 (344)
Q Consensus 212 ~a~~~~~~G~d~I~v~~~gG~~~~~g~~-~~~~l~~i~~~~~~~~~via~GGIr~g~dv~k----alalGAd~V~ig~~~ 286 (344)
.++.+.+.|++++.+.++.|-...-... -.+.+..+.+.+++++||++.=|=.+-.++++ +-.+|||++++..|+
T Consensus 27 ~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~st~~~i~~a~~a~~~Gad~v~v~~P~ 106 (289)
T PF00701_consen 27 LIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVGANSTEEAIELARHAQDAGADAVLVIPPY 106 (289)
T ss_dssp HHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEESSSHHHHHHHHHHHHHTT-SEEEEEEST
T ss_pred HHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCcchhHHHHHHHHHHHhhcCceEEEEeccc
Confidence 3456789999999998765532211111 23345555666667899998555545565553 334899999999998
Q ss_pred HHHhhhcChHHHHHHHHHHH
Q 019244 287 VYSLAAEGEKGVRRVLEMLR 306 (344)
Q Consensus 287 l~~~~~~G~~~v~~~l~~l~ 306 (344)
++.. ..+++.++++.+.
T Consensus 107 ~~~~---s~~~l~~y~~~ia 123 (289)
T PF00701_consen 107 YFKP---SQEELIDYFRAIA 123 (289)
T ss_dssp SSSC---CHHHHHHHHHHHH
T ss_pred cccc---hhhHHHHHHHHHH
Confidence 7642 3455555555443
|
The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A .... |
| >PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.32 Score=49.56 Aligned_cols=68 Identities=18% Similarity=0.285 Sum_probs=52.7
Q ss_pred HHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 019244 210 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 283 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig 283 (344)
.+.++.+.++|+|.|++...-|+. ...++.+.++++.. .++||++ |++-|.+++..++.+|||+|.+|
T Consensus 230 ~e~a~~L~~agvdvivvD~a~g~~----~~vl~~i~~i~~~~-p~~~vi~-g~v~t~e~a~~l~~aGad~i~vg 297 (486)
T PRK05567 230 EERAEALVEAGVDVLVVDTAHGHS----EGVLDRVREIKAKY-PDVQIIA-GNVATAEAARALIEAGADAVKVG 297 (486)
T ss_pred HHHHHHHHHhCCCEEEEECCCCcc----hhHHHHHHHHHhhC-CCCCEEE-eccCCHHHHHHHHHcCCCEEEEC
Confidence 477899999999999887532321 23456677776654 3688888 99999999999999999999775
|
|
| >cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid) | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.42 Score=45.20 Aligned_cols=93 Identities=15% Similarity=0.189 Sum_probs=58.7
Q ss_pred HHHHHHc-CCcEEEEccCCCCCCCCch-hhHHHHHHHHHHccCCCcEEEecCCCCHHHHH----HHHHcCCCEEEEchHH
Q 019244 213 ARIAVQA-GAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVF----KALALGASGIFIGRPV 286 (344)
Q Consensus 213 a~~~~~~-G~d~I~v~~~gG~~~~~g~-~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~----kalalGAd~V~ig~~~ 286 (344)
++.+.+. |+++|.+.|+-|-...-.. .-.+.+..+.+.+.+++|||+.=|=.+-.|++ .+-.+|||++++..|+
T Consensus 27 i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~~~~~~ai~~a~~a~~~Gad~v~~~~P~ 106 (288)
T cd00954 27 VDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGSLNLKESQELAKHAEELGYDAISAITPF 106 (288)
T ss_pred HHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCCCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 4557788 9999999876553221111 12334555566666789999844333444444 3345899999999998
Q ss_pred HHHhhhcChHHHHHHHHHHHHH
Q 019244 287 VYSLAAEGEKGVRRVLEMLREE 308 (344)
Q Consensus 287 l~~~~~~G~~~v~~~l~~l~~e 308 (344)
++.. .++++.++++.+.+.
T Consensus 107 y~~~---~~~~i~~~~~~v~~a 125 (288)
T cd00954 107 YYKF---SFEEIKDYYREIIAA 125 (288)
T ss_pred CCCC---CHHHHHHHHHHHHHh
Confidence 7642 456666666666543
|
It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases. |
| >cd00957 Transaldolase_TalAB Transaldolases including both TalA and TalB | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.57 Score=44.95 Aligned_cols=101 Identities=13% Similarity=0.190 Sum_probs=69.6
Q ss_pred cHHHHHHHHHhc--CCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCC-------------chhhHHHHHHHHHHc
Q 019244 187 SWKDVKWLQTIT--KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDY-------------VPATIMALEEVVKAT 251 (344)
Q Consensus 187 ~~~~i~~i~~~~--~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~-------------g~~~~~~l~~i~~~~ 251 (344)
+|+-++.++... ++++-+=.+.|.+.+..+.++|++.|... -||-.|| .-+.+..+.++.+..
T Consensus 134 T~eGi~A~~~L~~~GI~vn~TlvFS~~Qa~~aa~AGa~~ISPf--VgRi~d~~~~~~~~~~~~~~~d~Gv~~v~~i~~~~ 211 (313)
T cd00957 134 TWEGIQAAKQLEKEGIHCNLTLLFSFAQAVACAEAGVTLISPF--VGRILDWYKKHSGDKAYTAEEDPGVASVKKIYNYY 211 (313)
T ss_pred CHHHHHHHHHHHHCCCceeeeeecCHHHHHHHHHcCCCEEEee--cchHHHhhhhccccccCCccCCcHHHHHHHHHHHH
Confidence 676555444332 78888888899999999999999888653 3443333 113445555555543
Q ss_pred ---cCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhh
Q 019244 252 ---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAA 292 (344)
Q Consensus 252 ---~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~ 292 (344)
+.+..|+ ...+|+..++.. .+|+|.+-+.-.++..+..
T Consensus 212 ~~~~~~T~vm-aASfRn~~~v~~--laG~d~~Ti~p~ll~~L~~ 252 (313)
T cd00957 212 KKFGYKTKVM-GASFRNIGQILA--LAGCDYLTISPALLEELKN 252 (313)
T ss_pred HHcCCCcEEE-ecccCCHHHHHH--HhCCCeEEcCHHHHHHHHh
Confidence 2244444 566999999987 5899999999888876653
|
The enzyme catalyses the reversible transfer of a dyhydroxyacetone moiety, derived from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. The catalytic mechanism is similar to other class I aldolases. The enzyme is found in the non-oxidative branch of the pentose phosphate pathway and forms a dimer in solution. |
| >COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.79 Score=42.83 Aligned_cols=39 Identities=33% Similarity=0.421 Sum_probs=34.7
Q ss_pred HHHHHHHHHhcCCcEEEEe-ecCHHHHHHHHHcCCcEEEEc
Q 019244 188 WKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVS 227 (344)
Q Consensus 188 ~~~i~~i~~~~~~PvivK~-v~~~~~a~~~~~~G~d~I~v~ 227 (344)
-+.++++|+.+++|+.+.- +.++++++++.++ +|+++|.
T Consensus 194 ~~~v~~vr~~~~~Pv~vGFGIs~~e~~~~v~~~-ADGVIVG 233 (265)
T COG0159 194 KELVKRVRKYTDVPVLVGFGISSPEQAAQVAEA-ADGVIVG 233 (265)
T ss_pred HHHHHHHHHhcCCCeEEecCcCCHHHHHHHHHh-CCeEEEc
Confidence 3569999999999999986 5889999999999 9999994
|
|
| >cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.5 Score=44.40 Aligned_cols=92 Identities=20% Similarity=0.360 Sum_probs=58.4
Q ss_pred HHHHHHcCCcEEEEccCCCCCCCCchh-hHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHcCCCEEEEchHHH
Q 019244 213 ARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 287 (344)
Q Consensus 213 a~~~~~~G~d~I~v~~~gG~~~~~g~~-~~~~l~~i~~~~~~~~~via~GGIr~g~dv~k----alalGAd~V~ig~~~l 287 (344)
++.+.+.|++++.+.++-|-...-... -.+.+..+++.+.+++||++.=|=.+..++++ +-.+|||+|++..|.+
T Consensus 27 i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~~~~a~~a~~~G~d~v~~~~P~~ 106 (284)
T cd00950 27 IEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNNTAEAIELTKRAEKAGADAALVVTPYY 106 (284)
T ss_pred HHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCCccHHHHHHHHHHHHHcCCCEEEEccccc
Confidence 456778999999997765432221111 22345555566666899987544445666554 3447999999999987
Q ss_pred HHhhhcChHHHHHHHHHHHH
Q 019244 288 YSLAAEGEKGVRRVLEMLRE 307 (344)
Q Consensus 288 ~~~~~~G~~~v~~~l~~l~~ 307 (344)
+.. .++++.++++.+.+
T Consensus 107 ~~~---~~~~l~~~~~~ia~ 123 (284)
T cd00950 107 NKP---SQEGLYAHFKAIAE 123 (284)
T ss_pred CCC---CHHHHHHHHHHHHh
Confidence 642 34566666665554
|
It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways. |
| >COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.24 Score=45.99 Aligned_cols=93 Identities=23% Similarity=0.309 Sum_probs=69.2
Q ss_pred cHHHHHHHHHhcCCcEEEEe-ecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCC
Q 019244 187 SWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 265 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~-v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~ 265 (344)
+++.++.+++.+.+||..|- +.++.+...+..+|+|+|-+--.- + ....+..|.+....+ .+.++.. +++
T Consensus 95 s~e~L~~v~~~v~~PvL~KDFiiD~yQI~~Ar~~GADavLLI~~~---L--~~~~l~el~~~A~~L--Gm~~LVE--Vh~ 165 (254)
T COG0134 95 SFEDLRAVRAAVDLPVLRKDFIIDPYQIYEARAAGADAVLLIVAA---L--DDEQLEELVDRAHEL--GMEVLVE--VHN 165 (254)
T ss_pred CHHHHHHHHHhcCCCeeeccCCCCHHHHHHHHHcCcccHHHHHHh---c--CHHHHHHHHHHHHHc--CCeeEEE--ECC
Confidence 67899999999999999998 478999999999999998652100 0 111233344444434 5666664 899
Q ss_pred HHHHHHHHHcCCCEEEEchHHHH
Q 019244 266 GTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 266 g~dv~kalalGAd~V~ig~~~l~ 288 (344)
.+++.+|+.+||+.++|-.-=|.
T Consensus 166 ~eEl~rAl~~ga~iIGINnRdL~ 188 (254)
T COG0134 166 EEELERALKLGAKIIGINNRDLT 188 (254)
T ss_pred HHHHHHHHhCCCCEEEEeCCCcc
Confidence 99999999999999999865444
|
|
| >COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.10 E-value=1.3 Score=41.19 Aligned_cols=94 Identities=28% Similarity=0.432 Sum_probs=62.1
Q ss_pred cHHHHHHHHHhcCCcEEEEeec--CHHH----HHHHHHcCCcEEEEccCCCCCCCCc-hh--hHHHHHHHHHHccCCCcE
Q 019244 187 SWKDVKWLQTITKLPILVKGVL--TAED----ARIAVQAGAAGIIVSNHGARQLDYV-PA--TIMALEEVVKATQGRIPV 257 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v~--~~~~----a~~~~~~G~d~I~v~~~gG~~~~~g-~~--~~~~l~~i~~~~~~~~~v 257 (344)
+++.++++-+ .++||++|--+ |.++ |+-....|-..|++.-.|=|.++.. +- .+.+++-+++.. .+||
T Consensus 141 NF~LLke~G~-~~kPvLLKRg~~aTieEwL~AAEYI~s~GN~~vILCERGIRtfe~~TRntLDi~aV~~~kq~T--HLPV 217 (286)
T COG2876 141 NFALLKEVGR-QNKPVLLKRGLSATIEEWLNAAEYILSHGNGNVILCERGIRTFEKATRNTLDISAVPILKQET--HLPV 217 (286)
T ss_pred hhHHHHHhcc-cCCCeEEecCccccHHHHHHHHHHHHhCCCCcEEEEecccccccccccceechHHHHHHHhhc--CCCE
Confidence 4555666644 48999999763 5555 6677788988888887776655542 22 334566665544 7999
Q ss_pred EEec----CCCCHHH--HHHHHHcCCCEEEEc
Q 019244 258 FLDG----GVRRGTD--VFKALALGASGIFIG 283 (344)
Q Consensus 258 ia~G----GIr~g~d--v~kalalGAd~V~ig 283 (344)
|+|= |=|+... +..|+|.|||.+|+-
T Consensus 218 ivDpSH~~Grr~lv~pla~AA~AaGAdglmiE 249 (286)
T COG2876 218 IVDPSHATGRRDLVEPLAKAAIAAGADGLMIE 249 (286)
T ss_pred EECCCCcccchhhHHHHHHHHHhccCCeeEEE
Confidence 9953 4343332 235678999999975
|
|
| >TIGR00736 nifR3_rel_arch TIM-barrel protein, putative | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.63 Score=42.75 Aligned_cols=42 Identities=21% Similarity=0.138 Sum_probs=36.2
Q ss_pred CcHHHHHHHHHhcC-CcEEEEe-ecCHHHHHHHHHcCCcEEEEc
Q 019244 186 LSWKDVKWLQTITK-LPILVKG-VLTAEDARIAVQAGAAGIIVS 227 (344)
Q Consensus 186 ~~~~~i~~i~~~~~-~PvivK~-v~~~~~a~~~~~~G~d~I~v~ 227 (344)
..|+.|+.+++.++ +|||.=+ +.+.+++....++|||+|-+.
T Consensus 177 a~~~~I~~i~~~~~~ipIIgNGgI~s~eda~e~l~~GAd~Vmvg 220 (231)
T TIGR00736 177 ADMDLLKILSEEFNDKIIIGNNSIDDIESAKEMLKAGADFVSVA 220 (231)
T ss_pred hhHHHHHHHHHhcCCCcEEEECCcCCHHHHHHHHHhCCCeEEEc
Confidence 47999999999984 9987644 689999999999999999885
|
Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins. |
| >CHL00162 thiG thiamin biosynthesis protein G; Validated | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.55 Score=43.43 Aligned_cols=97 Identities=16% Similarity=0.254 Sum_probs=61.1
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEeccCCccccccHHHHHhhcCCCCcccccccccccccccccccchhhHHHHhhcCCCCC
Q 019244 107 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 186 (344)
Q Consensus 107 ~d~~~~~~~i~~a~~ag~~~l~~tvd~~~~g~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (344)
-|+..+-+--+...+.||.++-.+-|.|+...|-.|.--..-+|.+-... .+.+-.
T Consensus 121 PD~~etl~Aae~Lv~eGF~VlPY~~~D~v~a~rLed~Gc~aVMPlgsPIG------------------------Sg~Gl~ 176 (267)
T CHL00162 121 PDPIGTLKAAEFLVKKGFTVLPYINADPMLAKHLEDIGCATVMPLGSPIG------------------------SGQGLQ 176 (267)
T ss_pred CChHHHHHHHHHHHHCCCEEeecCCCCHHHHHHHHHcCCeEEeeccCccc------------------------CCCCCC
Confidence 34444333345555679998888888887766543321000012111000 011122
Q ss_pred cHHHHHHHHHhcCCcEEEEe-ecCHHHHHHHHHcCCcEEEEc
Q 019244 187 SWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVS 227 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~-v~~~~~a~~~~~~G~d~I~v~ 227 (344)
+...|+-|++..++||++-. +.+++|+..+.+.|+|++-+.
T Consensus 177 n~~~l~~i~e~~~vpVivdAGIgt~sDa~~AmElGaDgVL~n 218 (267)
T CHL00162 177 NLLNLQIIIENAKIPVIIDAGIGTPSEASQAMELGASGVLLN 218 (267)
T ss_pred CHHHHHHHHHcCCCcEEEeCCcCCHHHHHHHHHcCCCEEeec
Confidence 55679999998899998864 589999999999999999774
|
|
| >PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.17 Score=46.27 Aligned_cols=79 Identities=24% Similarity=0.366 Sum_probs=51.4
Q ss_pred HHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHH-----------HHHHHHHcCCCE
Q 019244 211 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT-----------DVFKALALGASG 279 (344)
Q Consensus 211 ~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~-----------dv~kalalGAd~ 279 (344)
..++.+.+.|+|+++++.. .+..+++..+ .--++.++||+- . .+-.++..||+.
T Consensus 139 ~~a~~a~~~g~dgvv~~~~-------------~~~~ir~~~~-~~~~~v~pGI~~-~g~~~~dq~~~~~~~~ai~~Gad~ 203 (230)
T PRK00230 139 RLAKLAQEAGLDGVVCSAQ-------------EAAAIREATG-PDFLLVTPGIRP-AGSDAGDQKRVMTPAQAIAAGSDY 203 (230)
T ss_pred HHHHHHHHcCCeEEEeChH-------------HHHHHHhhcC-CceEEEcCCcCC-CCCCcchHHHHhCHHHHHHcCCCE
Confidence 3456678899999988531 1344554443 334577899983 3 467788899999
Q ss_pred EEEchHHHHHhhhcChHHHHHHHHHHHHHHH
Q 019244 280 IFIGRPVVYSLAAEGEKGVRRVLEMLREEFE 310 (344)
Q Consensus 280 V~ig~~~l~~~~~~G~~~v~~~l~~l~~el~ 310 (344)
+.+||+++.+ +......+.+.+++.
T Consensus 204 iVvGR~I~~a------~dP~~~a~~i~~~i~ 228 (230)
T PRK00230 204 IVVGRPITQA------ADPAAAYEAILAEIA 228 (230)
T ss_pred EEECCcccCC------CCHHHHHHHHHHHhh
Confidence 9999998753 222334555555553
|
|
| >PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.57 Score=42.90 Aligned_cols=113 Identities=20% Similarity=0.214 Sum_probs=63.8
Q ss_pred HHHHHHHHHcCC-cc-----------ccCCHHHHHHHHHHHHHcCCcEEEeccCCccccccHHHHHhhcCCCCccccccc
Q 019244 91 YATARAASAAGT-IM-----------VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNF 158 (344)
Q Consensus 91 ~~lA~aA~~~g~-~~-----------~~~d~~~~~~~i~~a~~ag~~~l~~tvd~~~~g~r~~~~~~~~~~~~g~~~~~~ 158 (344)
..+|+-|++.+. .. ++-|+-.+-+-.+...+-||..+-.+-|.|++.+|-.|.--..-+|.+-...
T Consensus 79 v~~A~laRe~~~t~wIKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~VlPY~~~D~v~akrL~d~GcaavMPlgsPIG-- 156 (247)
T PF05690_consen 79 VRTARLAREAFGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEDAGCAAVMPLGSPIG-- 156 (247)
T ss_dssp HHHHHHHHHTTS-SEEEE--BS-TTT--B-HHHHHHHHHHHHHTT-EEEEEE-S-HHHHHHHHHTT-SEBEEBSSSTT--
T ss_pred HHHHHHHHHHcCCCeEEEEEeCCCCCcCCChhHHHHHHHHHHHCCCEEeecCCCCHHHHHHHHHCCCCEEEecccccc--
Confidence 467888887753 33 2234443333345555689999888888787765543321000011110000
Q ss_pred ccccccccccccchhhHHHHhhcCCCCCcHHHHHHHHHhcCCcEEEEe-ecCHHHHHHHHHcCCcEEEEc
Q 019244 159 QGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVS 227 (344)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~PvivK~-v~~~~~a~~~~~~G~d~I~v~ 227 (344)
.+.+-.+...++.|++..++||||-. +-++.+|..+.+.|+|+|-+-
T Consensus 157 ----------------------Sg~Gi~n~~~l~~i~~~~~vPvIvDAGiG~pSdaa~AMElG~daVLvN 204 (247)
T PF05690_consen 157 ----------------------SGRGIQNPYNLRIIIERADVPVIVDAGIGTPSDAAQAMELGADAVLVN 204 (247)
T ss_dssp ----------------------T---SSTHHHHHHHHHHGSSSBEEES---SHHHHHHHHHTT-SEEEES
T ss_pred ----------------------cCcCCCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHcCCceeehh
Confidence 01112245679999999999999864 578999999999999999874
|
ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C. |
| >cd00945 Aldolase_Class_I Class I aldolases | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.78 Score=39.94 Aligned_cols=82 Identities=21% Similarity=0.155 Sum_probs=52.8
Q ss_pred HHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccC-CCcEEEecCCCC--------HHHHHHHHHcCCCEEEE
Q 019244 212 DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQG-RIPVFLDGGVRR--------GTDVFKALALGASGIFI 282 (344)
Q Consensus 212 ~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~-~~~via~GGIr~--------g~dv~kalalGAd~V~i 282 (344)
.++.+.+.|+++|.+.+ ..+..+++...+ ++||++.=|-.+ -..+.++..+|||++++
T Consensus 18 ~~~~~~~~gv~gi~~~g-------------~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v 84 (201)
T cd00945 18 LCDEAIEYGFAAVCVNP-------------GYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDV 84 (201)
T ss_pred HHHHHHHhCCcEEEECH-------------HHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEE
Confidence 45678889999998853 455666666666 799887333332 34455677799999999
Q ss_pred chHHHHHhhhcChHHHHHHHHHHHH
Q 019244 283 GRPVVYSLAAEGEKGVRRVLEMLRE 307 (344)
Q Consensus 283 g~~~l~~~~~~G~~~v~~~l~~l~~ 307 (344)
..|+.+... ..++++.++++.+.+
T Consensus 85 ~~~~~~~~~-~~~~~~~~~~~~i~~ 108 (201)
T cd00945 85 VINIGSLKE-GDWEEVLEEIAAVVE 108 (201)
T ss_pred eccHHHHhC-CCHHHHHHHHHHHHH
Confidence 888765431 013444455444444
|
The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin. |
| >PTZ00411 transaldolase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.83 Score=44.21 Aligned_cols=102 Identities=15% Similarity=0.268 Sum_probs=70.5
Q ss_pred cHHHHHHHHHhc--CCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCC-------------chhhHHHHHHHHHHc
Q 019244 187 SWKDVKWLQTIT--KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDY-------------VPATIMALEEVVKAT 251 (344)
Q Consensus 187 ~~~~i~~i~~~~--~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~-------------g~~~~~~l~~i~~~~ 251 (344)
+|+-++.++... ++++-+=.+.|...|..+.++|++.|... -||-.|| +.+.+..+.++.+..
T Consensus 146 T~eGi~Aa~~L~~eGI~~N~TlvFS~~QA~aaaeAGa~~ISPf--VGRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~ 223 (333)
T PTZ00411 146 TWEGIQAAKALEKEGIHCNLTLLFSFAQAVACAQAGVTLISPF--VGRILDWYKKPEKAESYVGAQDPGVISVTKIYNYY 223 (333)
T ss_pred CHHHHHHHHHHHHCCCceeEeEecCHHHHHHHHHcCCCEEEee--cchHHHhcccccccccccccCCchHHHHHHHHHHH
Confidence 676554444332 78888888899999999999999988653 3443332 334455566665544
Q ss_pred c--CCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhh
Q 019244 252 Q--GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAA 292 (344)
Q Consensus 252 ~--~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~ 292 (344)
+ +--..|....+|+..++.. .+|+|.+-+.-.++..+..
T Consensus 224 k~~g~~T~Im~ASfRn~~qi~~--laG~D~lTi~p~ll~~L~~ 264 (333)
T PTZ00411 224 KKHGYKTIVMGASFRNTGEILE--LAGCDKLTISPKLLEELAN 264 (333)
T ss_pred HHcCCCeEEEecccCCHHHHHH--HHCCCEEeCCHHHHHHHHh
Confidence 2 2234555667999999987 3899999998888776643
|
|
| >cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage | Back alignment and domain information |
|---|
Probab=93.84 E-value=0.52 Score=43.56 Aligned_cols=97 Identities=21% Similarity=0.319 Sum_probs=56.6
Q ss_pred HHHHHHHhcCCcEEEEeec---CH----HHHHHHHHcCCcEEEEccC-----CCCCCC-Cchhh---HHHHHHHHHHccC
Q 019244 190 DVKWLQTITKLPILVKGVL---TA----EDARIAVQAGAAGIIVSNH-----GARQLD-YVPAT---IMALEEVVKATQG 253 (344)
Q Consensus 190 ~i~~i~~~~~~PvivK~v~---~~----~~a~~~~~~G~d~I~v~~~-----gG~~~~-~g~~~---~~~l~~i~~~~~~ 253 (344)
.++.|.....+|+++-+-. +. +.++++.++|+++|.+-.. .|+.-. .-.+. .+.+..++++..+
T Consensus 60 ~~~~I~~~~~~Pv~~D~~~G~g~~~~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~ 139 (243)
T cd00377 60 AVRRIARAVDLPVIADADTGYGNALNVARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDD 139 (243)
T ss_pred HHHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhc
Confidence 4677777778998876543 33 4467888999999999321 111000 01122 2334444444444
Q ss_pred --CCcEEEe--------cCCCCHHHHHHHH-HcCCCEEEEchHH
Q 019244 254 --RIPVFLD--------GGVRRGTDVFKAL-ALGASGIFIGRPV 286 (344)
Q Consensus 254 --~~~via~--------GGIr~g~dv~kal-alGAd~V~ig~~~ 286 (344)
+++|++= .|+.....-+++. .+|||++++-.+.
T Consensus 140 ~~~~~IiARTDa~~~~~~~~~eai~Ra~ay~~AGAD~v~v~~~~ 183 (243)
T cd00377 140 LPDFVIIARTDALLAGEEGLDEAIERAKAYAEAGADGIFVEGLK 183 (243)
T ss_pred cCCeEEEEEcCchhccCCCHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 6888885 3444444434443 4899999987553
|
Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to |
| >COG0176 MipB Transaldolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.84 E-value=1.5 Score=40.43 Aligned_cols=116 Identities=21% Similarity=0.279 Sum_probs=80.0
Q ss_pred cHHH---HHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHH---HccCC-CcEEE
Q 019244 187 SWKD---VKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVK---ATQGR-IPVFL 259 (344)
Q Consensus 187 ~~~~---i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~---~~~~~-~~via 259 (344)
+|+- ++.+.+. ++++-+=.+.|...|..+.++|++.|-. .-||-.||+......+.++++ ..... ..+++
T Consensus 101 T~eGl~Ai~~L~~e-GI~~NvTLiFS~~QAl~aa~aga~~iSp--FvgRi~D~~~d~~~~I~~~~~iy~~y~~~~~~t~v 177 (239)
T COG0176 101 TWEGLKAIKALEAE-GIKTNVTLIFSAAQALLAAEAGATYISP--FVGRIDDWGIDGMLGIAEAREIYDYYKQHGAKTLV 177 (239)
T ss_pred CHHHHHHHHHHHHC-CCeeeEEEEecHHHHHHHHHhCCeEEEe--ecchHHhhccCchHHHHHHHHHHHHhccccceEEE
Confidence 5654 4444443 6777777788999999999999887754 557767776554444444443 33223 45555
Q ss_pred ecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcC--------hHHHHHHHHHHH
Q 019244 260 DGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEG--------EKGVRRVLEMLR 306 (344)
Q Consensus 260 ~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G--------~~~v~~~l~~l~ 306 (344)
. ++++..++..+..+|||.+-+.-.++..+..++ .+|++.+.+.|.
T Consensus 178 a-s~~~~~~~~~~~l~G~d~~Tip~~~l~~l~~~~~~~~~~l~~eGI~~F~~D~~ 231 (239)
T COG0176 178 A-SARFPNHVYIAALAGADVLTIPPDLLKQLLKHGGAMAVPLLDEGIRKFAKDWE 231 (239)
T ss_pred e-cCccHHHHHHHHHhCCCcccCCHHHHHHHHhcccccccHHHHHHHHHHHHHHH
Confidence 4 599999999999999999999988888776553 245555554443
|
|
| >PRK03170 dihydrodipicolinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.62 Score=44.03 Aligned_cols=93 Identities=19% Similarity=0.340 Sum_probs=58.0
Q ss_pred HHHHHHcCCcEEEEccCCCCCCCCchh-hHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHcCCCEEEEchHHH
Q 019244 213 ARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 287 (344)
Q Consensus 213 a~~~~~~G~d~I~v~~~gG~~~~~g~~-~~~~l~~i~~~~~~~~~via~GGIr~g~dv~k----alalGAd~V~ig~~~l 287 (344)
++.+.+.|+++|.+.++-|-...-... -...+..+++.+.+++||++.=|=.+-.++++ +-.+|||+|++..|++
T Consensus 28 i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~G~d~v~~~pP~~ 107 (292)
T PRK03170 28 VDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGSNSTAEAIELTKFAEKAGADGALVVTPYY 107 (292)
T ss_pred HHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCCchHHHHHHHHHHHHHcCCCEEEECCCcC
Confidence 445778999999997654432222222 23345556666667899987444334455543 2347999999999987
Q ss_pred HHhhhcChHHHHHHHHHHHHH
Q 019244 288 YSLAAEGEKGVRRVLEMLREE 308 (344)
Q Consensus 288 ~~~~~~G~~~v~~~l~~l~~e 308 (344)
+.. .++++.++++.+.+.
T Consensus 108 ~~~---~~~~i~~~~~~ia~~ 125 (292)
T PRK03170 108 NKP---TQEGLYQHFKAIAEA 125 (292)
T ss_pred CCC---CHHHHHHHHHHHHhc
Confidence 642 456666666665443
|
|
| >COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.67 E-value=0.42 Score=43.55 Aligned_cols=97 Identities=20% Similarity=0.261 Sum_probs=61.5
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEeccCCccccccHHHHHhhcCCCCcccccccccccccccccccchhhHHHHhhcCCCCC
Q 019244 107 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 186 (344)
Q Consensus 107 ~d~~~~~~~i~~a~~ag~~~l~~tvd~~~~g~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (344)
-|+-.+-+-.++..+.||..+..+-|.|++.+|-.+.--.--+|.+-... .+-+-.
T Consensus 114 PD~~etl~Aae~Lv~eGF~VlPY~~dD~v~arrLee~GcaavMPl~aPIG------------------------Sg~G~~ 169 (262)
T COG2022 114 PDPIETLKAAEQLVKEGFVVLPYTTDDPVLARRLEEAGCAAVMPLGAPIG------------------------SGLGLQ 169 (262)
T ss_pred CChHHHHHHHHHHHhCCCEEeeccCCCHHHHHHHHhcCceEecccccccc------------------------CCcCcC
Confidence 34443333345555689999888888888876654321000012111100 011122
Q ss_pred cHHHHHHHHHhcCCcEEEE-eecCHHHHHHHHHcCCcEEEEc
Q 019244 187 SWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVS 227 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK-~v~~~~~a~~~~~~G~d~I~v~ 227 (344)
+-..++-|++..++||||- ++-++.+|..+.+.|+|+|-+-
T Consensus 170 n~~~l~iiie~a~VPviVDAGiG~pSdAa~aMElG~DaVL~N 211 (262)
T COG2022 170 NPYNLEIIIEEADVPVIVDAGIGTPSDAAQAMELGADAVLLN 211 (262)
T ss_pred CHHHHHHHHHhCCCCEEEeCCCCChhHHHHHHhcccceeehh
Confidence 4457888999999999986 4578999999999999999774
|
|
| >PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family | Back alignment and domain information |
|---|
Probab=93.52 E-value=0.076 Score=46.57 Aligned_cols=89 Identities=18% Similarity=0.216 Sum_probs=54.4
Q ss_pred HHHHHHHHHhcCCcEEEEee----cCHHH-HHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecC
Q 019244 188 WKDVKWLQTITKLPILVKGV----LTAED-ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 262 (344)
Q Consensus 188 ~~~i~~i~~~~~~PvivK~v----~~~~~-a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GG 262 (344)
...++..++. ++..+-+.- .+.+. .+.+.+..+|+|-+= .| .. ...+.++.+.+ ++|||+.|=
T Consensus 81 ~~~i~~Ak~~-gl~tIqRiFliDS~al~~~~~~i~~~~PD~vEil--Pg-----~~--p~vi~~i~~~~--~~PiIAGGL 148 (175)
T PF04309_consen 81 SNLIKRAKKL-GLLTIQRIFLIDSSALETGIKQIEQSKPDAVEIL--PG-----VM--PKVIKKIREET--NIPIIAGGL 148 (175)
T ss_dssp HHHHHHHHHT-T-EEEEEEE-SSHHHHHHHHHHHHHHT-SEEEEE--SC-----CH--HHHHCCCCCCC--SS-EEEESS
T ss_pred HHHHHHHHHc-CCEEEEEeeeecHHHHHHHHHHHhhcCCCEEEEc--hH-----HH--HHHHHHHHHhc--CCCEEeecc
Confidence 3456666653 766666653 23344 456778999999882 11 11 12333333322 699999999
Q ss_pred CCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 263 VRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 263 Ir~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
|++-+|+.++|+.||.+|..+.+-||
T Consensus 149 I~~~e~v~~al~aGa~aVSTS~~~LW 174 (175)
T PF04309_consen 149 IRTKEDVEEALKAGADAVSTSNKELW 174 (175)
T ss_dssp --SHHHHHHHCCTTCEEEEE--HHHC
T ss_pred cCCHHHHHHHHHcCCEEEEcCChHhc
Confidence 99999999999999999998877665
|
Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G. |
| >cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS) | Back alignment and domain information |
|---|
Probab=93.43 E-value=0.86 Score=40.27 Aligned_cols=87 Identities=25% Similarity=0.202 Sum_probs=59.6
Q ss_pred HHHHHHHHHhc-CCcEEEEe-ecCH--HHHHHHHHcCCcEEEEccCCCCCCCCchhhHH-HHHHHHHHccCCCcEEEe-c
Q 019244 188 WKDVKWLQTIT-KLPILVKG-VLTA--EDARIAVQAGAAGIIVSNHGARQLDYVPATIM-ALEEVVKATQGRIPVFLD-G 261 (344)
Q Consensus 188 ~~~i~~i~~~~-~~PvivK~-v~~~--~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~-~l~~i~~~~~~~~~via~-G 261 (344)
.+.++++++.. ++|+++-. +.++ ..++.+.++|+|+|.+....+ +.... .+..+++ ..++++++ =
T Consensus 41 ~~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~aGad~i~~h~~~~------~~~~~~~i~~~~~---~g~~~~v~~~ 111 (202)
T cd04726 41 MEAVRALREAFPDKIIVADLKTADAGALEAEMAFKAGADIVTVLGAAP------LSTIKKAVKAAKK---YGKEVQVDLI 111 (202)
T ss_pred HHHHHHHHHHCCCCEEEEEEEeccccHHHHHHHHhcCCCEEEEEeeCC------HHHHHHHHHHHHH---cCCeEEEEEe
Confidence 56789998874 78887732 2233 357889999999999843211 11222 2333322 25777775 7
Q ss_pred CCCCHHHHHHHHHcCCCEEEEc
Q 019244 262 GVRRGTDVFKALALGASGIFIG 283 (344)
Q Consensus 262 GIr~g~dv~kalalGAd~V~ig 283 (344)
+..|..++.+++..|+|.|.+.
T Consensus 112 ~~~t~~e~~~~~~~~~d~v~~~ 133 (202)
T cd04726 112 GVEDPEKRAKLLKLGVDIVILH 133 (202)
T ss_pred CCCCHHHHHHHHHCCCCEEEEc
Confidence 8999999999888999999885
|
KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates. |
| >PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.31 Score=47.32 Aligned_cols=74 Identities=22% Similarity=0.219 Sum_probs=45.0
Q ss_pred HHHHHH--cCCcEEEEccCCCC----CCCCc------hhhHHHHHHHHHHccCCCcEEE-ecCCCCHHHHHH----HHHc
Q 019244 213 ARIAVQ--AGAAGIIVSNHGAR----QLDYV------PATIMALEEVVKATQGRIPVFL-DGGVRRGTDVFK----ALAL 275 (344)
Q Consensus 213 a~~~~~--~G~d~I~v~~~gG~----~~~~g------~~~~~~l~~i~~~~~~~~~via-~GGIr~g~dv~k----alal 275 (344)
++.+.+ .|+|.+++--.+.- ..+.+ ....+.+.++.+.. .+|++. +||+ +..++.+ ++..
T Consensus 190 ~r~~~~~elGaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~--~~P~vvlsgG~-~~~~f~~~l~~A~~a 266 (340)
T PRK12858 190 MEEFSKPRYGVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDAT--DLPFIFLSAGV-SPELFRRTLEFACEA 266 (340)
T ss_pred HHHHhhhccCCeEEEeeCCCCcccccccccccccccHHHHHHHHHHHHhhC--CCCEEEECCCC-CHHHHHHHHHHHHHc
Confidence 456664 99999999532210 01110 11124455655544 577666 7787 6666654 5557
Q ss_pred CC--CEEEEchHHHHH
Q 019244 276 GA--SGIFIGRPVVYS 289 (344)
Q Consensus 276 GA--d~V~ig~~~l~~ 289 (344)
|| +.|.+||.....
T Consensus 267 Ga~f~Gvl~GRniwq~ 282 (340)
T PRK12858 267 GADFSGVLCGRATWQD 282 (340)
T ss_pred CCCccchhhhHHHHhh
Confidence 99 999999987653
|
|
| >PRK09250 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=93.22 E-value=0.85 Score=44.20 Aligned_cols=76 Identities=25% Similarity=0.271 Sum_probs=50.8
Q ss_pred HHHHHHcCCcEEEEccCC---C-------CCC----C--CchhhHHHHHHHHHHc-cCCCcEEEecCCCCHH-H----HH
Q 019244 213 ARIAVQAGAAGIIVSNHG---A-------RQL----D--YVPATIMALEEVVKAT-QGRIPVFLDGGVRRGT-D----VF 270 (344)
Q Consensus 213 a~~~~~~G~d~I~v~~~g---G-------~~~----~--~g~~~~~~l~~i~~~~-~~~~~via~GGIr~g~-d----v~ 270 (344)
++.+.+.|||.|++--.+ + ... + ......+.++.+.+.+ .+++||+.+||=.... | +.
T Consensus 223 aRiaaELGADIVKv~yp~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~V~ac~ag~vpVviAGG~k~~~~e~L~~v~ 302 (348)
T PRK09250 223 NHLAATIGADIIKQKLPTNNGGYKAINFGKTDDRVYSKLTSDHPIDLVRYQVANCYMGRRGLINSGGASKGEDDLLDAVR 302 (348)
T ss_pred HHHHHHHcCCEEEecCCCChhhHHHhhcccccccccccccccchHHHHHHHHHhhccCCceEEEeCCCCCCHHHHHHHHH
Confidence 678999999999996432 1 000 0 0112345566666554 3479999999998532 3 33
Q ss_pred HH---HHcCCCEEEEchHHHH
Q 019244 271 KA---LALGASGIFIGRPVVY 288 (344)
Q Consensus 271 ka---lalGAd~V~ig~~~l~ 288 (344)
.+ +..||..+.+||-++.
T Consensus 303 ~a~~~i~aGa~Gv~iGRNIfQ 323 (348)
T PRK09250 303 TAVINKRAGGMGLIIGRKAFQ 323 (348)
T ss_pred HHHHhhhcCCcchhhchhhhc
Confidence 56 7789999999998765
|
|
| >PLN02979 glycolate oxidase | Back alignment and domain information |
|---|
Probab=93.18 E-value=0.81 Score=44.76 Aligned_cols=92 Identities=22% Similarity=0.291 Sum_probs=62.6
Q ss_pred cHHHHHHHHHhcCCcEEEEee------cCHHHHHHHHHcCCcEEEEcc----CCCCC-----------------CC----
Q 019244 187 SWKDVKWLQTITKLPILVKGV------LTAEDARIAVQAGAAGIIVSN----HGARQ-----------------LD---- 235 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v------~~~~~a~~~~~~G~d~I~v~~----~gG~~-----------------~~---- 235 (344)
++|+| .+..+.|.+.+.- .+.+..+++.++|++++++.- .|-|. +.
T Consensus 111 slEeI---a~a~~~~~wfQLY~~~Dr~~~~~ll~RA~~aG~~AlvlTVD~pv~G~R~rd~rn~~~~p~~~~~~~~~~~~~ 187 (366)
T PLN02979 111 SVEEV---ASTGPGIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDL 187 (366)
T ss_pred CHHHH---HhccCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEecCCCCCCchhhhccCCCCCcccchhhhhhccc
Confidence 44554 4434567888874 234567889999999998842 11110 00
Q ss_pred -------------------CchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEch
Q 019244 236 -------------------YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 284 (344)
Q Consensus 236 -------------------~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~ 284 (344)
....+++.|..+++.. ++|||+ .||.+.+|+.+++.+|+|+|.++.
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~ltW~dl~wlr~~~--~~Pviv-KgV~~~~dA~~a~~~Gvd~I~Vsn 252 (366)
T PLN02979 188 GKMDEANDSGLASYVAGQIDRTLSWKDVQWLQTIT--KLPILV-KGVLTGEDARIAIQAGAAGIIVSN 252 (366)
T ss_pred cCCCcccchhHHHHHhhcCCCCCCHHHHHHHHhcc--CCCEEe-ecCCCHHHHHHHHhcCCCEEEECC
Confidence 0112456677777655 799888 558899999999999999999875
|
|
| >COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.14 E-value=0.94 Score=40.91 Aligned_cols=97 Identities=18% Similarity=0.245 Sum_probs=67.1
Q ss_pred CCCCCcHHHHHHHHHhcCCcEEEEeecCH---HHHHHHHHcCCcEEEEccC-----CCCCCCCchhhHHHHHHHHHHccC
Q 019244 182 IDRSLSWKDVKWLQTITKLPILVKGVLTA---EDARIAVQAGAAGIIVSNH-----GARQLDYVPATIMALEEVVKATQG 253 (344)
Q Consensus 182 ~~~~~~~~~i~~i~~~~~~PvivK~v~~~---~~a~~~~~~G~d~I~v~~~-----gG~~~~~g~~~~~~l~~i~~~~~~ 253 (344)
.|++.+.+.++.+++..++|||--...+. .........-+|.+.++.. ||+. -.-+|..+... +.
T Consensus 81 lHG~e~~~~~~~l~~~~~~~v~kai~v~~~~~~~~~~~~~~~~d~~LlDa~~~~~~GGtG---~~fDW~~l~~~----~~ 153 (208)
T COG0135 81 LHGDEDPEYIDQLKEELGVPVIKAISVSEEGDLELAAREEGPVDAILLDAKVPGLPGGTG---QTFDWNLLPKL----RL 153 (208)
T ss_pred ECCCCCHHHHHHHHhhcCCceEEEEEeCCccchhhhhhccCCccEEEEcCCCCCCCCCCC---cEECHHHhccc----cc
Confidence 45667889999999988888873333332 2445555667899999874 5542 12234445443 22
Q ss_pred CCcEEEecCCCCHHHHHHHHHcCC-CEEEEchHH
Q 019244 254 RIPVFLDGGVRRGTDVFKALALGA-SGIFIGRPV 286 (344)
Q Consensus 254 ~~~via~GGIr~g~dv~kalalGA-d~V~ig~~~ 286 (344)
..|++..||+. ++++.+|++++. .+|=+.+.+
T Consensus 154 ~~~~~LAGGL~-p~NV~~ai~~~~p~gvDvSSGV 186 (208)
T COG0135 154 SKPVMLAGGLN-PDNVAEAIALGPPYGVDVSSGV 186 (208)
T ss_pred cCCEEEECCCC-HHHHHHHHHhcCCceEEecccc
Confidence 67899999996 999999999987 777777644
|
|
| >COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.13 E-value=1.3 Score=41.28 Aligned_cols=84 Identities=27% Similarity=0.406 Sum_probs=58.4
Q ss_pred HHHhcCCcEEE------Eee-----cCHHH----HHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEE
Q 019244 194 LQTITKLPILV------KGV-----LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 258 (344)
Q Consensus 194 i~~~~~~Pviv------K~v-----~~~~~----a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~vi 258 (344)
-...+++|+++ |.+ .+++. ++.+.+.|+|.|++.-.| ..+...++.+.+ .+||+
T Consensus 138 ~a~~~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGADIiK~~ytg---------~~e~F~~vv~~~--~vpVv 206 (265)
T COG1830 138 DAHELGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELGADIIKTKYTG---------DPESFRRVVAAC--GVPVV 206 (265)
T ss_pred HHHHcCCceEEEEeccCCcccccccccHHHHHHHHHHHHHhcCCeEeecCCC---------ChHHHHHHHHhC--CCCEE
Confidence 33456899887 112 22222 568899999999985322 226677777777 49999
Q ss_pred EecCCCC-HHH-----HHHHHHcCCCEEEEchHHHH
Q 019244 259 LDGGVRR-GTD-----VFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 259 a~GGIr~-g~d-----v~kalalGAd~V~ig~~~l~ 288 (344)
.+||=.. ..+ +..++..||..+.+||-++.
T Consensus 207 iaGG~k~~~~~~~l~~~~~ai~aGa~G~~~GRNifQ 242 (265)
T COG1830 207 IAGGPKTETEREFLEMVTAAIEAGAMGVAVGRNIFQ 242 (265)
T ss_pred EeCCCCCCChHHHHHHHHHHHHccCcchhhhhhhhc
Confidence 9999988 322 23456689999999998765
|
|
| >PRK13125 trpA tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=93.05 E-value=2.8 Score=38.66 Aligned_cols=40 Identities=33% Similarity=0.463 Sum_probs=33.8
Q ss_pred HHHHHHHHHhc-CCcEEEEeec-CHHHHHHHHHcCCcEEEEc
Q 019244 188 WKDVKWLQTIT-KLPILVKGVL-TAEDARIAVQAGAAGIIVS 227 (344)
Q Consensus 188 ~~~i~~i~~~~-~~PvivK~v~-~~~~a~~~~~~G~d~I~v~ 227 (344)
.+.++++|+.. +.|+++-+.. ++++++.+.++|+|+++++
T Consensus 173 ~~~i~~lr~~~~~~~i~v~gGI~~~e~i~~~~~~gaD~vvvG 214 (244)
T PRK13125 173 ERNIKRVRNLVGNKYLVVGFGLDSPEDARDALSAGADGVVVG 214 (244)
T ss_pred HHHHHHHHHhcCCCCEEEeCCcCCHHHHHHHHHcCCCEEEEC
Confidence 34688898887 5898887754 9999999999999999985
|
|
| >PRK07709 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=93.04 E-value=1.4 Score=41.86 Aligned_cols=45 Identities=20% Similarity=0.440 Sum_probs=39.1
Q ss_pred CCCcHHHHHHHHHhcCCcEEEEee--cCHHHHHHHHHcCCcEEEEcc
Q 019244 184 RSLSWKDVKWLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVSN 228 (344)
Q Consensus 184 ~~~~~~~i~~i~~~~~~PvivK~v--~~~~~a~~~~~~G~d~I~v~~ 228 (344)
+.++|+.+++|++.+++|+++-|. .+.++.+++.+.|+.-|-++.
T Consensus 188 p~L~~~~L~~I~~~~~iPLVLHGgSG~~~e~~~~ai~~Gi~KiNi~T 234 (285)
T PRK07709 188 PNLGFAEMEQVRDFTGVPLVLHGGTGIPTADIEKAISLGTSKINVNT 234 (285)
T ss_pred CccCHHHHHHHHHHHCCCEEEeCCCCCCHHHHHHHHHcCCeEEEeCh
Confidence 456889999999999999999886 567899999999999998853
|
|
| >COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.02 E-value=0.17 Score=46.07 Aligned_cols=63 Identities=17% Similarity=0.274 Sum_probs=42.9
Q ss_pred cCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 219 AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 219 ~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
.|...+.+--.||. ..|...+.+..+ + ...++|.-|||||++.+.+...+|||.+.+|+.+..
T Consensus 163 ~g~~~~YlEagsga---~~Pv~~e~v~~v---~-~~~~LivGGGIrs~E~A~~~a~agAD~IVtG~iiee 225 (240)
T COG1646 163 LGMPVVYLEAGSGA---GDPVPVEMVSRV---L-SDTPLIVGGGIRSPEQAREMAEAGADTIVTGTIIEE 225 (240)
T ss_pred hCCeEEEEEecCCC---CCCcCHHHHHHh---h-ccceEEEcCCcCCHHHHHHHHHcCCCEEEECceeec
Confidence 45566665433332 223344444433 2 356999999999999998888889999999997754
|
|
| >PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=92.85 E-value=1.5 Score=38.76 Aligned_cols=79 Identities=29% Similarity=0.279 Sum_probs=51.5
Q ss_pred HHHHHHHHhcCC-cEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHH
Q 019244 189 KDVKWLQTITKL-PILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 267 (344)
Q Consensus 189 ~~i~~i~~~~~~-PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~ 267 (344)
+.++.+++..+. -+....+++.++++.+.++|+|+|.+. |- +++ +.++++.. +++.+. | ..|..
T Consensus 52 e~~~~~~~~~~~~~~g~gtvl~~d~~~~A~~~gAdgv~~p-~~------~~~----~~~~~~~~--~~~~i~-G-~~t~~ 116 (187)
T PRK07455 52 ELISQLREKLPECIIGTGTILTLEDLEEAIAAGAQFCFTP-HV------DPE----LIEAAVAQ--DIPIIP-G-ALTPT 116 (187)
T ss_pred HHHHHHHHhCCCcEEeEEEEEcHHHHHHHHHcCCCEEECC-CC------CHH----HHHHHHHc--CCCEEc-C-cCCHH
Confidence 346666654432 122334577899999999999999652 21 122 12233332 345443 4 99999
Q ss_pred HHHHHHHcCCCEEEE
Q 019244 268 DVFKALALGASGIFI 282 (344)
Q Consensus 268 dv~kalalGAd~V~i 282 (344)
++.++..+|||.|.+
T Consensus 117 e~~~A~~~Gadyv~~ 131 (187)
T PRK07455 117 EIVTAWQAGASCVKV 131 (187)
T ss_pred HHHHHHHCCCCEEEE
Confidence 999999999999987
|
|
| >PRK07709 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=92.81 E-value=2.9 Score=39.61 Aligned_cols=107 Identities=19% Similarity=0.229 Sum_probs=74.3
Q ss_pred cCHHHHHHHH-HcCCcEEEEcc---CCCCCCCCchh--hHHHHHHHHHHccCCCcEEEecCCCCH-HHHHHHHHcCCCEE
Q 019244 208 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPA--TIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGI 280 (344)
Q Consensus 208 ~~~~~a~~~~-~~G~d~I~v~~---~gG~~~~~g~~--~~~~l~~i~~~~~~~~~via~GGIr~g-~dv~kalalGAd~V 280 (344)
.+|++|+.-. +.|+|.+-++. ||-+ .+.| .++.|.+|++.+ ++|+..=||=..+ +++.|++.+|..=|
T Consensus 156 T~peeA~~Fv~~TgvD~LAvaiGt~HG~Y---~~~p~L~~~~L~~I~~~~--~iPLVLHGgSG~~~e~~~~ai~~Gi~Ki 230 (285)
T PRK07709 156 ADPAECKHLVEATGIDCLAPALGSVHGPY---KGEPNLGFAEMEQVRDFT--GVPLVLHGGTGIPTADIEKAISLGTSKI 230 (285)
T ss_pred CCHHHHHHHHHHhCCCEEEEeecccccCc---CCCCccCHHHHHHHHHHH--CCCEEEeCCCCCCHHHHHHHHHcCCeEE
Confidence 4788887755 58999998874 4432 2333 457788998877 7999998876666 67778999999999
Q ss_pred EEchHHHHHhhh-------cC------hHHHHHHHHHHHHHHHHHHHHhCCC
Q 019244 281 FIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 319 (344)
Q Consensus 281 ~ig~~~l~~~~~-------~G------~~~v~~~l~~l~~el~~~m~~~G~~ 319 (344)
-+++-+..+... .. ..-.....+.+++.++..|..+|+.
T Consensus 231 Ni~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~a~~~~v~~~i~~~gs~ 282 (285)
T PRK07709 231 NVNTENQIEFTKAVREVLNKDQEVYDPRKFIGPGRDAIKATVIGKIREFGSN 282 (285)
T ss_pred EeChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999977554211 00 1123344456777777888888764
|
|
| >PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART) | Back alignment and domain information |
|---|
Probab=92.78 E-value=1 Score=41.94 Aligned_cols=114 Identities=19% Similarity=0.215 Sum_probs=56.9
Q ss_pred HHHHHHHhcCC-cEEEEeecCHHHHHHHHHcCCcEEEEcc---CCCCC-CCCchh---hHHHHHHHHHH---ccCCCcEE
Q 019244 190 DVKWLQTITKL-PILVKGVLTAEDARIAVQAGAAGIIVSN---HGARQ-LDYVPA---TIMALEEVVKA---TQGRIPVF 258 (344)
Q Consensus 190 ~i~~i~~~~~~-PvivK~v~~~~~a~~~~~~G~d~I~v~~---~gG~~-~~~g~~---~~~~l~~i~~~---~~~~~~vi 258 (344)
+++.|+..-.. =+-+--+.++++|++..++|+|.|++.- .||+. .....+ ..+.+.++.++ +++++-++
T Consensus 139 EVemi~~A~~~gl~T~~yvf~~e~A~~M~~AGaDiiv~H~GlT~gG~~Ga~~~~sl~~a~~~~~~i~~aa~~v~~dii~l 218 (268)
T PF09370_consen 139 EVEMIRKAHEKGLFTTAYVFNEEQARAMAEAGADIIVAHMGLTTGGSIGAKTALSLEEAAERIQEIFDAARAVNPDIIVL 218 (268)
T ss_dssp HHHHHHHHHHTT-EE--EE-SHHHHHHHHHHT-SEEEEE-SS----------S--HHHHHHHHHHHHHHHHCC-TT-EEE
T ss_pred HHHHHHHHHHCCCeeeeeecCHHHHHHHHHcCCCEEEecCCccCCCCcCccccCCHHHHHHHHHHHHHHHHHhCCCeEEE
Confidence 35555544321 1223345799999999999999998842 23321 111221 12223333332 33454444
Q ss_pred E-ecCCCCHHHHHHHHHc--CCCEEEEchHHHHHhhhcChHHHHHHHHHHHHHHH
Q 019244 259 L-DGGVRRGTDVFKALAL--GASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFE 310 (344)
Q Consensus 259 a-~GGIr~g~dv~kalal--GAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~el~ 310 (344)
. -|-|.+++|+...+.. |++...-++.+=. -.+++.+....++++
T Consensus 219 ~hGGPI~~p~D~~~~l~~t~~~~Gf~G~Ss~ER-------lP~E~ai~~~~~~FK 266 (268)
T PF09370_consen 219 CHGGPIATPEDAQYVLRNTKGIHGFIGASSMER-------LPVERAITETVRAFK 266 (268)
T ss_dssp EECTTB-SHHHHHHHHHH-TTEEEEEESTTTTH-------HHHHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHhcCCCCCEEecccchhh-------ccHHHHHHHHHHHhh
Confidence 4 5569999999999884 5677766665421 234445555555544
|
Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C. |
| >PRK12309 transaldolase/EF-hand domain-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=92.65 E-value=1.5 Score=43.35 Aligned_cols=100 Identities=14% Similarity=0.179 Sum_probs=67.5
Q ss_pred cHHHHHHHHHhc--CCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCC-----c--------hhhHHHHHHHHHHc
Q 019244 187 SWKDVKWLQTIT--KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDY-----V--------PATIMALEEVVKAT 251 (344)
Q Consensus 187 ~~~~i~~i~~~~--~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~-----g--------~~~~~~l~~i~~~~ 251 (344)
+|+-++.++... ++++-+=.+.|.+.|..+.++|++.|... -||-.|| | -|.+..+.++.+..
T Consensus 140 T~eGi~A~~~L~~~GI~~n~TlvFS~~QA~aaaeAGa~~ISPf--VgRi~dw~~~~~g~~~~~~~~dpGv~~v~~i~~~~ 217 (391)
T PRK12309 140 TWEGIKAAEVLEKEGIHCNLTLLFGFHQAIACAEAGVTLISPF--VGRILDWYKKETGRDSYPGAEDPGVQSVTQIYNYY 217 (391)
T ss_pred CHHHHHHHHHHHHCCCceeeeeecCHHHHHHHHHcCCCEEEee--cchhhhhhhhccCCCccccccchHHHHHHHHHHHH
Confidence 576555544332 78888888899999999999999888653 3443221 1 12444555555544
Q ss_pred c---CCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhh
Q 019244 252 Q---GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 291 (344)
Q Consensus 252 ~---~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~ 291 (344)
+ .+..|++ ..+|+..++.+ .+|+|.+-+.-.++..+.
T Consensus 218 ~~~~~~T~Im~-ASfRn~~~v~~--laG~d~~Ti~p~ll~~L~ 257 (391)
T PRK12309 218 KKFGYKTEVMG-ASFRNIGEIIE--LAGCDLLTISPKLLEQLR 257 (391)
T ss_pred HhcCCCcEEEe-cccCCHHHHHH--HHCCCeeeCCHHHHHHHH
Confidence 2 2344544 55999999987 489999998877766543
|
|
| >cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes | Back alignment and domain information |
|---|
Probab=92.63 E-value=1.4 Score=41.93 Aligned_cols=88 Identities=19% Similarity=0.190 Sum_probs=59.7
Q ss_pred HHHHHHhcCCcEEEEeec--CHH----HHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCC
Q 019244 191 VKWLQTITKLPILVKGVL--TAE----DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 264 (344)
Q Consensus 191 i~~i~~~~~~PvivK~v~--~~~----~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr 264 (344)
.+.+++..+.|+++.... +++ .++.+.+.|+++|.+.-..- .......++.+.++++.. ++||++- ++.
T Consensus 107 ~~~i~~~~~~~~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~~~p--~~~~~~~~~~i~~l~~~~--~~pvivK-~v~ 181 (299)
T cd02809 107 LEEVAAAAPGPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDTP--VLGRRLTWDDLAWLRSQW--KGPLILK-GIL 181 (299)
T ss_pred HHHHHHhcCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCC--CCCCCCCHHHHHHHHHhc--CCCEEEe-ecC
Confidence 444554445788887652 333 45667889999998842110 001113456778887766 5888885 589
Q ss_pred CHHHHHHHHHcCCCEEEEc
Q 019244 265 RGTDVFKALALGASGIFIG 283 (344)
Q Consensus 265 ~g~dv~kalalGAd~V~ig 283 (344)
+..++.++..+|||+|.+.
T Consensus 182 s~~~a~~a~~~G~d~I~v~ 200 (299)
T cd02809 182 TPEDALRAVDAGADGIVVS 200 (299)
T ss_pred CHHHHHHHHHCCCCEEEEc
Confidence 9999999999999999884
|
This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. |
| >TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family | Back alignment and domain information |
|---|
Probab=92.48 E-value=1.7 Score=41.09 Aligned_cols=45 Identities=18% Similarity=0.464 Sum_probs=39.3
Q ss_pred CCCcHHHHHHHHHhcCCcEEEEee--cCHHHHHHHHHcCCcEEEEcc
Q 019244 184 RSLSWKDVKWLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVSN 228 (344)
Q Consensus 184 ~~~~~~~i~~i~~~~~~PvivK~v--~~~~~a~~~~~~G~d~I~v~~ 228 (344)
+.++|+.+++|++.+++|+++-|. .+.++.+++.+.|+.-|-+++
T Consensus 185 p~Ldf~~L~~I~~~~~iPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T 231 (282)
T TIGR01858 185 PKLDFDRLAEIREVVDVPLVLHGASDVPDEDVRRTIELGICKVNVAT 231 (282)
T ss_pred CccCHHHHHHHHHHhCCCeEEecCCCCCHHHHHHHHHcCCeEEEeCc
Confidence 467899999999999999999886 567889999999999998753
|
This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4. |
| >PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase | Back alignment and domain information |
|---|
Probab=92.46 E-value=1.1 Score=43.97 Aligned_cols=91 Identities=22% Similarity=0.269 Sum_probs=61.7
Q ss_pred HHHHHHhcCCcEEEEee------cCHHHHHHHHHcCCcEEEEcc----CCCCCCC-------------------------
Q 019244 191 VKWLQTITKLPILVKGV------LTAEDARIAVQAGAAGIIVSN----HGARQLD------------------------- 235 (344)
Q Consensus 191 i~~i~~~~~~PvivK~v------~~~~~a~~~~~~G~d~I~v~~----~gG~~~~------------------------- 235 (344)
+++|.+..+.|.+.+.- .+.+..+++.++|+.++++.- .|-|..|
T Consensus 113 lEeva~~~~~~~wfQlY~~~Dr~~~~~li~RA~~aG~~alvlTvD~p~~G~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~ 192 (367)
T PLN02493 113 VEEVASTGPGIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMD 192 (367)
T ss_pred HHHHHhcCCCCcEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEcCCCCCCcchhhhcccCCCCcccchhhhhhccccCCC
Confidence 34444444567888764 244668899999999998852 1211000
Q ss_pred ---------------CchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEch
Q 019244 236 ---------------YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 284 (344)
Q Consensus 236 ---------------~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~ 284 (344)
....+++.|..+++.. ++|||+ .||.+.+|+.+++.+|+|+|.++.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~tW~di~wlr~~~--~~Piiv-KgV~~~~dA~~a~~~Gvd~I~Vsn 253 (367)
T PLN02493 193 EANDSGLASYVAGQIDRTLSWKDVQWLQTIT--KLPILV-KGVLTGEDARIAIQAGAAGIIVSN 253 (367)
T ss_pred cccchhHHHHHhhcCCCCCCHHHHHHHHhcc--CCCEEe-ecCCCHHHHHHHHHcCCCEEEECC
Confidence 0112456677777654 799888 557899999999999999999875
|
|
| >PLN02535 glycolate oxidase | Back alignment and domain information |
|---|
Probab=92.38 E-value=1.2 Score=43.76 Aligned_cols=90 Identities=21% Similarity=0.333 Sum_probs=62.1
Q ss_pred HHHHHHhcCCcEEEEee------cCHHHHHHHHHcCCcEEEEcc----CCCCCCC-------------------------
Q 019244 191 VKWLQTITKLPILVKGV------LTAEDARIAVQAGAAGIIVSN----HGARQLD------------------------- 235 (344)
Q Consensus 191 i~~i~~~~~~PvivK~v------~~~~~a~~~~~~G~d~I~v~~----~gG~~~~------------------------- 235 (344)
+++|.+..+-|.+.+.- .+.+..+++.++|+.+|++.- .|-|..|
T Consensus 115 lEeva~~~~~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~ 194 (364)
T PLN02535 115 VEEVASSCNAVRFLQLYVYKRRDIAAQLVQRAEKNGYKAIVLTADVPRLGRREADIKNKMISPQLKNFEGLLSTEVVSDK 194 (364)
T ss_pred HHHHHhcCCCCeEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeecCCCCCCchhhhhcCCCCcchhhHhhhhccCCCccc
Confidence 44445545668888874 234567889999999998852 1111000
Q ss_pred ------------CchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 019244 236 ------------YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 283 (344)
Q Consensus 236 ------------~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig 283 (344)
....+++.+..+++.. ++||++ .||.+.+|+.++..+|+|+|.+.
T Consensus 195 ~~~~~~~~~~~~~~~~tW~~i~~lr~~~--~~Pviv-KgV~~~~dA~~a~~~GvD~I~vs 251 (364)
T PLN02535 195 GSGLEAFASETFDASLSWKDIEWLRSIT--NLPILI-KGVLTREDAIKAVEVGVAGIIVS 251 (364)
T ss_pred cccHHHHHHhccCCCCCHHHHHHHHhcc--CCCEEE-ecCCCHHHHHHHHhcCCCEEEEe
Confidence 0113456677776654 689888 66999999999999999999886
|
|
| >COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=92.28 E-value=0.53 Score=42.61 Aligned_cols=80 Identities=19% Similarity=0.304 Sum_probs=56.6
Q ss_pred HHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHH
Q 019244 189 KDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 268 (344)
Q Consensus 189 ~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~d 268 (344)
+.++.+++..+.|++|- ++...+.+.|+|+|.++.. | ..+.+.++.++. ..+.--.+++-++
T Consensus 55 ~~~~~lc~~~~v~liIN-----d~~dlA~~~~AdGVHlGq~-----D------~~~~~ar~~~~~--~~iIG~S~h~~ee 116 (211)
T COG0352 55 EKLRALCQKYGVPLIIN-----DRVDLALAVGADGVHLGQD-----D------MPLAEARELLGP--GLIIGLSTHDLEE 116 (211)
T ss_pred HHHHHHHHHhCCeEEec-----CcHHHHHhCCCCEEEcCCc-----c------cchHHHHHhcCC--CCEEEeecCCHHH
Confidence 46788888889999975 4566778999999977321 1 123334444432 2344445779999
Q ss_pred HHHHHHcCCCEEEEchHH
Q 019244 269 VFKALALGASGIFIGRPV 286 (344)
Q Consensus 269 v~kalalGAd~V~ig~~~ 286 (344)
+.++..+|||.|++|.-|
T Consensus 117 a~~A~~~g~DYv~~Gpif 134 (211)
T COG0352 117 ALEAEELGADYVGLGPIF 134 (211)
T ss_pred HHHHHhcCCCEEEECCcC
Confidence 999999999999999754
|
|
| >PRK05269 transaldolase B; Provisional | Back alignment and domain information |
|---|
Probab=92.26 E-value=1.9 Score=41.54 Aligned_cols=100 Identities=15% Similarity=0.231 Sum_probs=69.8
Q ss_pred cHHHHHHHHHhc--CCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCC-------------chhhHHHHHHHHHHc
Q 019244 187 SWKDVKWLQTIT--KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDY-------------VPATIMALEEVVKAT 251 (344)
Q Consensus 187 ~~~~i~~i~~~~--~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~-------------g~~~~~~l~~i~~~~ 251 (344)
+|+-++.++... ++++-+=.+.|.+.+..+.++|++.|-.. -||-.|| +.+.+..+.++.+..
T Consensus 136 T~eGi~A~~~L~~~GI~vn~TlvFs~~Qa~~aa~AGa~~ISPf--VgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~ 213 (318)
T PRK05269 136 TWEGIRAAEQLEKEGINCNLTLLFSFAQARACAEAGVFLISPF--VGRILDWYKKNTGKKEYAPAEDPGVVSVTKIYNYY 213 (318)
T ss_pred CHHHHHHHHHHHHcCCceeEeEecCHHHHHHHHHcCCCEEEee--ccHHHHHhhhcccccccCcCCCcHHHHHHHHHHHH
Confidence 576555444332 78888888899999999999999887653 3443222 234555555655543
Q ss_pred ---cCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhh
Q 019244 252 ---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 291 (344)
Q Consensus 252 ---~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~ 291 (344)
+.+..|++ ..+|+..++.. ..|+|.+-+.-.++..+.
T Consensus 214 k~~~~~t~im~-ASfrn~~~v~~--laG~d~vTi~p~ll~~l~ 253 (318)
T PRK05269 214 KKHGYKTVVMG-ASFRNTGQILE--LAGCDRLTISPALLEELA 253 (318)
T ss_pred HHcCCCceEEe-eccCCHHHHHH--HhCCCeEECCHHHHHHHH
Confidence 23555666 46999999996 569999988888887765
|
|
| >cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA) | Back alignment and domain information |
|---|
Probab=92.26 E-value=2.1 Score=39.46 Aligned_cols=134 Identities=21% Similarity=0.198 Sum_probs=76.6
Q ss_pred ccceeeccccc-ccccCChhhHHHHHHHHHcCCcc--c-cCCHHHHHHHHHHHHHcCCcEEE-eccCCccccccHHHHHh
Q 019244 71 SMPIMIAPTAM-QKMAHPEGEYATARAASAAGTIM--V-YKDRNVVAQLVRRAERAGFKAIA-LTVDTPRLGRREADIKN 145 (344)
Q Consensus 71 ~~Pi~iapm~~-~~~~~~~~~~~lA~aA~~~g~~~--~-~~d~~~~~~~i~~a~~ag~~~l~-~tvd~~~~g~r~~~~~~ 145 (344)
+.|+++ |++ ....+ .+.....+.+.++|+-. + -...+...++++.+++.|.+.+. +++.++.- |-..+..
T Consensus 76 ~~pv~l--m~y~n~~~~-~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~~~~g~~~i~~i~P~T~~~--~i~~i~~ 150 (242)
T cd04724 76 TIPIVL--MGYYNPILQ-YGLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAKEYGLDLIFLVAPTTPDE--RIKKIAE 150 (242)
T ss_pred CCCEEE--EEecCHHHH-hCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHH--HHHHHHh
Confidence 457554 544 22222 24456788888888765 1 12446677889999999987644 67666531 2222211
Q ss_pred hcCCCCcccccccccccccccccccchhhHHHHhhcCCCCCcHHHHHHHHHhcCCcEEEEee-cCHHHHHHHHHcCCcEE
Q 019244 146 RFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGI 224 (344)
Q Consensus 146 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~PvivK~v-~~~~~a~~~~~~G~d~I 224 (344)
. ..++.. + +......+.+. .......+.++++|+..++|+.+.+. .+.++++.+.++ +|++
T Consensus 151 ~---~~~~vy--~-------~s~~g~tG~~~-----~~~~~~~~~i~~lr~~~~~pI~vggGI~~~e~~~~~~~~-ADgv 212 (242)
T cd04724 151 L---ASGFIY--Y-------VSRTGVTGART-----ELPDDLKELIKRIRKYTDLPIAVGFGISTPEQAAEVAKY-ADGV 212 (242)
T ss_pred h---CCCCEE--E-------EeCCCCCCCcc-----CCChhHHHHHHHHHhcCCCcEEEEccCCCHHHHHHHHcc-CCEE
Confidence 0 001000 0 00000000000 00111346799999988999999875 568899999999 9999
Q ss_pred EEc
Q 019244 225 IVS 227 (344)
Q Consensus 225 ~v~ 227 (344)
+|.
T Consensus 213 VvG 215 (242)
T cd04724 213 IVG 215 (242)
T ss_pred EEC
Confidence 995
|
TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan. |
| >TIGR00874 talAB transaldolase | Back alignment and domain information |
|---|
Probab=92.26 E-value=2.2 Score=41.08 Aligned_cols=100 Identities=11% Similarity=0.167 Sum_probs=68.7
Q ss_pred cHHHHHHHHHhc--CCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCC-----c--------hhhHHHHHHHHHHc
Q 019244 187 SWKDVKWLQTIT--KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDY-----V--------PATIMALEEVVKAT 251 (344)
Q Consensus 187 ~~~~i~~i~~~~--~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~-----g--------~~~~~~l~~i~~~~ 251 (344)
+|+-++.++... ++++-+=.+.|.+.+..+.++|++.|-.. -||-.|| | .+.+..+.++.+..
T Consensus 134 T~eGi~A~~~L~~~GI~vN~TliFS~~Qa~aaa~AGa~~ISPF--VgRi~dw~~~~~g~~~~~~~~d~Gv~~v~~i~~~~ 211 (317)
T TIGR00874 134 TWEGIRAAEELEKEGIHCNLTLLFSFVQAIACAEAKVTLISPF--VGRILDWYKAATGKKEYSIEEDPGVASVKKIYNYY 211 (317)
T ss_pred CHHHHHHHHHHHHCCCceeeeeecCHHHHHHHHHcCCCEEEee--cchHhHhhhhccCccccccccCchHHHHHHHHHHH
Confidence 566554444332 88988888899999999999999888653 3443332 1 34445555555443
Q ss_pred ---cCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhh
Q 019244 252 ---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 291 (344)
Q Consensus 252 ---~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~ 291 (344)
+.+. .|....+|+..++.+ ..|+|.+-+.-.++..+.
T Consensus 212 k~~g~~T-~Im~ASfRn~~qv~~--laG~d~~Ti~p~ll~~L~ 251 (317)
T TIGR00874 212 KKHGYPT-EVMGASFRNKEEILA--LAGCDRLTISPALLDELK 251 (317)
T ss_pred HHcCCCc-EEEeeccCCHHHHHH--HHCCCeEeCCHHHHHHHH
Confidence 2244 444566999999996 579999999988877654
|
This family includes the majority of known and predicted transaldolase sequences, including E. coli TalA and TalB. It excluded two other families. The first includes E. coli transaldolase-like protein TalC. The second family includes the putative transaldolases of Helicobacter pylori and Mycobacterium tuberculosis. |
| >PRK12346 transaldolase A; Provisional | Back alignment and domain information |
|---|
Probab=92.10 E-value=2.3 Score=40.82 Aligned_cols=101 Identities=14% Similarity=0.227 Sum_probs=68.9
Q ss_pred cHHHHHHHHHhc--CCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCC-------------chhhHHHHHHHHHHc
Q 019244 187 SWKDVKWLQTIT--KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDY-------------VPATIMALEEVVKAT 251 (344)
Q Consensus 187 ~~~~i~~i~~~~--~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~-------------g~~~~~~l~~i~~~~ 251 (344)
+|+-++.++... ++++-+=.+.|.+.+..+.++|++.|-. .-||-.|| +.+.+..+.++.+..
T Consensus 135 T~eGi~A~~~L~~~GI~~n~TliFS~~Qa~~aa~AGa~~ISP--fVgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~ 212 (316)
T PRK12346 135 TWEGIRAAEELEKEGINCNLTLLFSFAQARACAEAGVFLISP--FVGRIYDWYQARKPMDPYVVEEDPGVKSVRNIYDYY 212 (316)
T ss_pred CHHHHHHHHHHHHCCCceeEEEecCHHHHHHHHHcCCCEEEe--cccHHHHhhhhccccccccccCCChHHHHHHHHHHH
Confidence 676555544332 7888888889999999999999998865 33443332 234455555555544
Q ss_pred ---cCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhh
Q 019244 252 ---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAA 292 (344)
Q Consensus 252 ---~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~ 292 (344)
+.+..|+ ...+|+..++. ...|+|.+-+.-.++..+..
T Consensus 213 k~~~~~T~Vm-~ASfRn~~qi~--alaG~d~lTi~p~ll~~L~~ 253 (316)
T PRK12346 213 KQHRYETIVM-GASFRRTEQIL--ALAGCDRLTISPNLLKELQE 253 (316)
T ss_pred HHcCCCcEEE-ecccCCHHHHH--HHhCCCEEeCCHHHHHHHHh
Confidence 2234444 45699999998 44699999999888776643
|
|
| >COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.07 E-value=6.8 Score=35.81 Aligned_cols=87 Identities=18% Similarity=0.307 Sum_probs=51.5
Q ss_pred cHHHHHHHHHhc-CCcEEEEee----cCH-HHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEe
Q 019244 187 SWKDVKWLQTIT-KLPILVKGV----LTA-EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD 260 (344)
Q Consensus 187 ~~~~i~~i~~~~-~~PvivK~v----~~~-~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~ 260 (344)
+.+.++++.+.. +++|.+--. .++ +..+++++.|+.-|-.| ||. ....-....|.++.+..++++.|++-
T Consensus 102 D~~~le~Li~aA~gL~vTFHrAFD~~~d~~~ale~li~~Gv~RILTs--Gg~--~sa~eg~~~l~~li~~a~gri~Im~G 177 (241)
T COG3142 102 DMPRLEKLIEAAGGLGVTFHRAFDECPDPLEALEQLIELGVERILTS--GGK--ASALEGLDLLKRLIEQAKGRIIIMAG 177 (241)
T ss_pred CHHHHHHHHHHccCCceeeehhhhhcCCHHHHHHHHHHCCCcEEecC--CCc--CchhhhHHHHHHHHHHhcCCEEEEeC
Confidence 334555555544 455544432 334 44578999999998764 443 11122334455555555578999999
Q ss_pred cCCCCHHHHHHH-HHcCCC
Q 019244 261 GGVRRGTDVFKA-LALGAS 278 (344)
Q Consensus 261 GGIr~g~dv~ka-lalGAd 278 (344)
|||+ .+.+... ...|+.
T Consensus 178 aGV~-~~N~~~l~~~tg~~ 195 (241)
T COG3142 178 AGVR-AENIAELVLLTGVT 195 (241)
T ss_pred CCCC-HHHHHHHHHhcCch
Confidence 9998 5666655 456754
|
|
| >KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.00 E-value=1.6 Score=38.80 Aligned_cols=113 Identities=21% Similarity=0.261 Sum_probs=68.9
Q ss_pred HHHHHHHHhc-CCcEEEEeecCHHHHHHHHHcCCcEEEEc----cCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCC
Q 019244 189 KDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVS----NHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 263 (344)
Q Consensus 189 ~~i~~i~~~~-~~PvivK~v~~~~~a~~~~~~G~d~I~v~----~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGI 263 (344)
+.++.||+.- +.-+.+|--.+.+++....+ -+|.+-|- |.||.. +-..-+.-+..+++.. .++.|=.|||+
T Consensus 103 ~lv~~ir~~Gmk~G~alkPgT~Ve~~~~~~~-~~D~vLvMtVePGFGGQk--Fme~mm~KV~~lR~ky-p~l~ievDGGv 178 (224)
T KOG3111|consen 103 ELVEKIREKGMKVGLALKPGTPVEDLEPLAE-HVDMVLVMTVEPGFGGQK--FMEDMMPKVEWLREKY-PNLDIEVDGGV 178 (224)
T ss_pred HHHHHHHHcCCeeeEEeCCCCcHHHHHHhhc-cccEEEEEEecCCCchhh--hHHHHHHHHHHHHHhC-CCceEEecCCc
Confidence 3577787752 23345554456777766655 45665543 334421 1122222333444332 36777799999
Q ss_pred CCHHHHHHHHHcCCCEEEEchHHHHHhhhcChHHHHHHHHHHHHHHHHH
Q 019244 264 RRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELA 312 (344)
Q Consensus 264 r~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~el~~~ 312 (344)
. +..+-|+..+||+++..|+..+.+ ..-.++|..|+++...+
T Consensus 179 ~-~~ti~~~a~AGAN~iVaGsavf~a------~d~~~vi~~lr~~v~~a 220 (224)
T KOG3111|consen 179 G-PSTIDKAAEAGANMIVAGSAVFGA------ADPSDVISLLRNSVEKA 220 (224)
T ss_pred C-cchHHHHHHcCCCEEEecceeecC------CCHHHHHHHHHHHHhhh
Confidence 7 688999999999999999998753 22235677777766544
|
|
| >PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=91.97 E-value=2.4 Score=40.20 Aligned_cols=46 Identities=17% Similarity=0.435 Sum_probs=39.6
Q ss_pred CCCCcHHHHHHHHHhcCCcEEEEee--cCHHHHHHHHHcCCcEEEEcc
Q 019244 183 DRSLSWKDVKWLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVSN 228 (344)
Q Consensus 183 ~~~~~~~~i~~i~~~~~~PvivK~v--~~~~~a~~~~~~G~d~I~v~~ 228 (344)
.+.++|+.+++|++.+++|+++-|. .+.++.+++.+.|+.-|-++.
T Consensus 186 ~p~Ld~~~L~~I~~~~~iPLVlHGgSG~~~e~~~kai~~Gi~KiNi~T 233 (284)
T PRK12737 186 EPKLDFERLAEIREKVSIPLVLHGASGVPDEDVKKAISLGICKVNVAT 233 (284)
T ss_pred CCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHCCCeEEEeCc
Confidence 3467899999999999999999886 567889999999999998853
|
|
| >PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4 | Back alignment and domain information |
|---|
Probab=91.89 E-value=0.65 Score=43.39 Aligned_cols=39 Identities=36% Similarity=0.487 Sum_probs=32.5
Q ss_pred HHHHHHHHhcCCcEEEEe-ecCHHHHHHHHHcCCcEEEEcc
Q 019244 189 KDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSN 228 (344)
Q Consensus 189 ~~i~~i~~~~~~PvivK~-v~~~~~a~~~~~~G~d~I~v~~ 228 (344)
+.++.+|+.+++||.+.- +.++++++.+. .|+|+++|..
T Consensus 188 ~~i~~ik~~~~~Pv~vGFGI~~~e~~~~~~-~~aDGvIVGS 227 (259)
T PF00290_consen 188 EFIKRIKKHTDLPVAVGFGISTPEQAKKLA-AGADGVIVGS 227 (259)
T ss_dssp HHHHHHHHTTSS-EEEESSS-SHHHHHHHH-TTSSEEEESH
T ss_pred HHHHHHHhhcCcceEEecCCCCHHHHHHHH-ccCCEEEECH
Confidence 469999999999999986 57899999999 9999999953
|
2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: |
| >PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=91.80 E-value=2.6 Score=40.01 Aligned_cols=44 Identities=14% Similarity=0.407 Sum_probs=38.8
Q ss_pred CCCcHHHHHHHHHhcCCcEEEEee--cCHHHHHHHHHcCCcEEEEc
Q 019244 184 RSLSWKDVKWLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVS 227 (344)
Q Consensus 184 ~~~~~~~i~~i~~~~~~PvivK~v--~~~~~a~~~~~~G~d~I~v~ 227 (344)
+.++|+.+++|++.+++|+++-|. .+.++.+++.+.|+.-|-++
T Consensus 187 p~Ldfd~l~~I~~~~~vPLVLHGgSG~~~e~~~kai~~GI~KiNi~ 232 (286)
T PRK12738 187 PKIDFQRLAEIREVVDVPLVLHGASDVPDEFVRRTIELGVTKVNVA 232 (286)
T ss_pred CcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHcCCeEEEeC
Confidence 567899999999999999999886 46788999999999999875
|
|
| >PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=91.76 E-value=3.5 Score=40.00 Aligned_cols=127 Identities=23% Similarity=0.359 Sum_probs=75.7
Q ss_pred cHHHHHHHHHhcCCcEEEEeec--CHHH----HHHHHHcCCcEEEEccCCCCCCC-Cchh--hHHHHHHHHHHccCCCcE
Q 019244 187 SWKDVKWLQTITKLPILVKGVL--TAED----ARIAVQAGAAGIIVSNHGARQLD-YVPA--TIMALEEVVKATQGRIPV 257 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v~--~~~~----a~~~~~~G~d~I~v~~~gG~~~~-~g~~--~~~~l~~i~~~~~~~~~v 257 (344)
++..++++.+ +++||++|-.+ +.++ ++.+...|-.-+.+.-.|.+... .... .+.+++.+++.. ..||
T Consensus 189 N~~LL~~va~-~~kPViLk~G~~~ti~E~l~A~e~i~~~GN~~viL~erG~~tf~~~~~~~ldl~ai~~lk~~~--~lPV 265 (335)
T PRK08673 189 NFDLLKEVGK-TNKPVLLKRGMSATIEEWLMAAEYILAEGNPNVILCERGIRTFETATRNTLDLSAVPVIKKLT--HLPV 265 (335)
T ss_pred CHHHHHHHHc-CCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCCcChhhhhHHHHHHHHHhc--CCCE
Confidence 4456666655 58999999863 5655 45566778877777544554442 1222 344566665544 6899
Q ss_pred EEecCCCCH------HHHHHHHHcCCCEEEEchHHHH--HhhhcChHH-HHHHHHHHHHHHHHHHHHhC
Q 019244 258 FLDGGVRRG------TDVFKALALGASGIFIGRPVVY--SLAAEGEKG-VRRVLEMLREEFELAMALSG 317 (344)
Q Consensus 258 ia~GGIr~g------~dv~kalalGAd~V~ig~~~l~--~~~~~G~~~-v~~~l~~l~~el~~~m~~~G 317 (344)
|++..=.+| .-...|+++|||++++-..+-- ++ ++|... --+-++.|.++++..-..+|
T Consensus 266 i~d~sH~~G~~~~v~~~a~AAvA~GAdGliIE~H~~pd~al-sD~~~sl~p~e~~~lv~~i~~i~~~~g 333 (335)
T PRK08673 266 IVDPSHATGKRDLVEPLALAAVAAGADGLIVEVHPDPEKAL-SDGPQSLTPEEFEELMKKLRAIAEALG 333 (335)
T ss_pred EEeCCCCCccccchHHHHHHHHHhCCCEEEEEecCCcccCC-CcchhcCCHHHHHHHHHHHHHHHHHhC
Confidence 886543334 3456788999999999875522 11 233221 11234556666666655555
|
|
| >cd02812 PcrB_like PcrB_like proteins | Back alignment and domain information |
|---|
Probab=91.74 E-value=0.4 Score=43.64 Aligned_cols=42 Identities=29% Similarity=0.464 Sum_probs=37.6
Q ss_pred cHHHHHHHHHhc-CCcEEEEe-ecCHHHHHHHHHcCCcEEEEcc
Q 019244 187 SWKDVKWLQTIT-KLPILVKG-VLTAEDARIAVQAGAAGIIVSN 228 (344)
Q Consensus 187 ~~~~i~~i~~~~-~~PvivK~-v~~~~~a~~~~~~G~d~I~v~~ 228 (344)
+.+.++.+++.+ ++|+++.+ +.++++++.+.++|+|.|++++
T Consensus 162 ~~e~I~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs 205 (219)
T cd02812 162 PPEVVRAVKKVLGDTPLIVGGGIRSGEQAKEMAEAGADTIVVGN 205 (219)
T ss_pred CHHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHHcCCCEEEECc
Confidence 567899999998 99999987 4799999999999999999965
|
One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown. |
| >TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein | Back alignment and domain information |
|---|
Probab=91.72 E-value=0.43 Score=43.54 Aligned_cols=43 Identities=28% Similarity=0.362 Sum_probs=38.1
Q ss_pred CcHHHHHHHHHhc-CCcEEEEe-ecCHHHHHHHHHcCCcEEEEcc
Q 019244 186 LSWKDVKWLQTIT-KLPILVKG-VLTAEDARIAVQAGAAGIIVSN 228 (344)
Q Consensus 186 ~~~~~i~~i~~~~-~~PvivK~-v~~~~~a~~~~~~G~d~I~v~~ 228 (344)
..++.++.+++.+ ++|+++.+ +.+.++++.+.++|+|.|++++
T Consensus 165 v~~e~i~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs 209 (223)
T TIGR01768 165 VPPELVAEVKKVLDKARLFVGGGIRSVEKAREMAEAGADTIVTGN 209 (223)
T ss_pred cCHHHHHHHHHHcCCCCEEEecCCCCHHHHHHHHHcCCCEEEECc
Confidence 3578899999998 89998876 5899999999999999999965
|
This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired. |
| >PRK08610 fructose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=91.47 E-value=2.9 Score=39.69 Aligned_cols=46 Identities=26% Similarity=0.449 Sum_probs=39.5
Q ss_pred CCCCcHHHHHHHHHhcCCcEEEEee--cCHHHHHHHHHcCCcEEEEcc
Q 019244 183 DRSLSWKDVKWLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVSN 228 (344)
Q Consensus 183 ~~~~~~~~i~~i~~~~~~PvivK~v--~~~~~a~~~~~~G~d~I~v~~ 228 (344)
.+.++|+.+++|++.+++|+++-|. .+.++.+++++.|+.-|-++.
T Consensus 187 ~p~Ld~~~L~~I~~~~~vPLVLHGgSG~~~e~~~~ai~~GI~KiNi~T 234 (286)
T PRK08610 187 EPKLGFKEMEEIGLSTGLPLVLHGGTGIPTKDIQKAIPFGTAKINVNT 234 (286)
T ss_pred CCCCCHHHHHHHHHHHCCCEEEeCCCCCCHHHHHHHHHCCCeEEEecc
Confidence 3567899999999999999999886 567889999999999998753
|
|
| >PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=91.45 E-value=2.8 Score=39.71 Aligned_cols=44 Identities=16% Similarity=0.438 Sum_probs=38.8
Q ss_pred CCCcHHHHHHHHHhcCCcEEEEee--cCHHHHHHHHHcCCcEEEEc
Q 019244 184 RSLSWKDVKWLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVS 227 (344)
Q Consensus 184 ~~~~~~~i~~i~~~~~~PvivK~v--~~~~~a~~~~~~G~d~I~v~ 227 (344)
+.++|+.+++|++.+++|+++-|. .+.++.+++.+.|+.-|-++
T Consensus 187 p~Ld~~~L~~I~~~~~vPLVLHGgSG~~~e~~~~ai~~Gi~KiNi~ 232 (284)
T PRK09195 187 PKLDFDRLENIRQWVNIPLVLHGASGLPTKDIQQTIKLGICKVNVA 232 (284)
T ss_pred CcCCHHHHHHHHHHhCCCeEEecCCCCCHHHHHHHHHcCCeEEEeC
Confidence 467899999999999999999886 56788999999999999875
|
|
| >TIGR02317 prpB methylisocitrate lyase | Back alignment and domain information |
|---|
Probab=91.44 E-value=1 Score=42.73 Aligned_cols=83 Identities=22% Similarity=0.302 Sum_probs=58.5
Q ss_pred CCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCC----CCCCchhhH----HHHHHHHHHccCCCcEEEec--CCCCHHH
Q 019244 199 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----QLDYVPATI----MALEEVVKATQGRIPVFLDG--GVRRGTD 268 (344)
Q Consensus 199 ~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~----~~~~g~~~~----~~l~~i~~~~~~~~~via~G--GIr~g~d 268 (344)
+-|+++-++-+.-.|+.+.++|.+++.+|+++-. ..|.+.-++ +.+..|.+.+ ++||++|. |..++.+
T Consensus 12 ~~~l~~p~~~Da~SAri~e~aGf~Ai~~sg~~~a~~lG~pD~g~lt~~e~~~~~~~I~~~~--~iPviaD~d~GyG~~~~ 89 (285)
T TIGR02317 12 EDILQIPGAINAMAALLAERAGFEAIYLSGAAVAASLGLPDLGITTLDEVAEDARRITRVT--DLPLLVDADTGFGEAFN 89 (285)
T ss_pred CCcEEeCCCCCHHHHHHHHHcCCCEEEEcHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhcc--CCCEEEECCCCCCCHHH
Confidence 4688888888899999999999999999975311 123333232 3344444444 79999965 8888888
Q ss_pred H----HHHHHcCCCEEEEc
Q 019244 269 V----FKALALGASGIFIG 283 (344)
Q Consensus 269 v----~kalalGAd~V~ig 283 (344)
+ -++..+||.++.|-
T Consensus 90 v~~tv~~~~~aG~agi~IE 108 (285)
T TIGR02317 90 VARTVREMEDAGAAAVHIE 108 (285)
T ss_pred HHHHHHHHHHcCCeEEEEe
Confidence 5 34556899988884
|
Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus. |
| >PRK11320 prpB 2-methylisocitrate lyase; Provisional | Back alignment and domain information |
|---|
Probab=91.28 E-value=1.1 Score=42.63 Aligned_cols=82 Identities=23% Similarity=0.360 Sum_probs=58.0
Q ss_pred CCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCC-----CCCCchhhHH----HHHHHHHHccCCCcEEEec--CCCCHH
Q 019244 199 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR-----QLDYVPATIM----ALEEVVKATQGRIPVFLDG--GVRRGT 267 (344)
Q Consensus 199 ~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~-----~~~~g~~~~~----~l~~i~~~~~~~~~via~G--GIr~g~ 267 (344)
+.|+++-++-+.-.|+.+.++|.++|.+|+++=. ..|.+.-+++ .+..|.+.+ ++||++|. |..++.
T Consensus 16 ~~~l~~p~~~Da~SAri~e~~Gf~ai~~Sg~~~a~~~lG~PD~g~l~~~e~~~~~~~I~~~~--~iPviaD~d~GyG~~~ 93 (292)
T PRK11320 16 EKPLQIVGTINAYHALLAERAGFKAIYLSGGGVAAASLGLPDLGITTLDDVLIDVRRITDAC--DLPLLVDIDTGFGGAF 93 (292)
T ss_pred CCcEEecCCCCHHHHHHHHHcCCCEEEeCHHHHHhHhcCCCCCCCCCHHHHHHHHHHHHhcc--CCCEEEECCCCCCCHH
Confidence 5688888888899999999999999999875311 1243333332 334444444 79999965 777888
Q ss_pred HH----HHHHHcCCCEEEE
Q 019244 268 DV----FKALALGASGIFI 282 (344)
Q Consensus 268 dv----~kalalGAd~V~i 282 (344)
++ -++...||.++.|
T Consensus 94 ~v~r~V~~~~~aGaagi~I 112 (292)
T PRK11320 94 NIARTVKSMIKAGAAAVHI 112 (292)
T ss_pred HHHHHHHHHHHcCCeEEEE
Confidence 86 3445689988888
|
|
| >PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA | Back alignment and domain information |
|---|
Probab=91.25 E-value=0.99 Score=43.20 Aligned_cols=43 Identities=21% Similarity=0.629 Sum_probs=32.4
Q ss_pred CCcHHHHHHHHHhcCCcEEEEe-ecCHHHHHHHHHc-CCcEEEEc
Q 019244 185 SLSWKDVKWLQTITKLPILVKG-VLTAEDARIAVQA-GAAGIIVS 227 (344)
Q Consensus 185 ~~~~~~i~~i~~~~~~PvivK~-v~~~~~a~~~~~~-G~d~I~v~ 227 (344)
..+|+.+.++++.+++||+.=| +.|.++++...+. |+|+|-++
T Consensus 169 ~a~w~~i~~i~~~~~ipvi~NGdI~s~~d~~~~~~~tg~dgvMig 213 (309)
T PF01207_consen 169 PADWEAIAEIKEALPIPVIANGDIFSPEDAERMLEQTGADGVMIG 213 (309)
T ss_dssp ---HHHHHHCHHC-TSEEEEESS--SHHHHHHHCCCH-SSEEEES
T ss_pred ccchHHHHHHhhcccceeEEcCccCCHHHHHHHHHhcCCcEEEEc
Confidence 4489999999999999999866 5899999988776 99999884
|
Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y. |
| >PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=91.18 E-value=3.2 Score=38.93 Aligned_cols=98 Identities=22% Similarity=0.354 Sum_probs=61.5
Q ss_pred cHHHHHHHHHhcCCcEEEEeec--CHHHH----HHHHHcCCcEEEEccCCCCCCC-Cchh--hHHHHHHHHHHccCCCcE
Q 019244 187 SWKDVKWLQTITKLPILVKGVL--TAEDA----RIAVQAGAAGIIVSNHGARQLD-YVPA--TIMALEEVVKATQGRIPV 257 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v~--~~~~a----~~~~~~G~d~I~v~~~gG~~~~-~g~~--~~~~l~~i~~~~~~~~~v 257 (344)
+.+.++++ ..+++||++|..+ +.++. +.+...|-.-+.+.-.|++... .... .+..++.+++.. .+||
T Consensus 123 n~~LL~~~-a~~gkPV~lk~G~~~s~~e~~~A~e~i~~~Gn~~i~L~~rG~~t~~~Y~~~~vdl~~i~~lk~~~--~~pV 199 (266)
T PRK13398 123 NFELLKEV-GKTKKPILLKRGMSATLEEWLYAAEYIMSEGNENVVLCERGIRTFETYTRNTLDLAAVAVIKELS--HLPI 199 (266)
T ss_pred CHHHHHHH-hcCCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCeEEEEECCCCCCCCCCHHHHHHHHHHHHHhcc--CCCE
Confidence 34567777 4569999999863 56653 4555678766666544553332 1122 334455554433 6899
Q ss_pred EEecCCCC------HHHHHHHHHcCCCEEEEchHHH
Q 019244 258 FLDGGVRR------GTDVFKALALGASGIFIGRPVV 287 (344)
Q Consensus 258 ia~GGIr~------g~dv~kalalGAd~V~ig~~~l 287 (344)
+.|..=.. ......|+++||+++++-+.+-
T Consensus 200 ~~D~sHs~G~~~~v~~~~~aAva~Ga~Gl~iE~H~~ 235 (266)
T PRK13398 200 IVDPSHATGRRELVIPMAKAAIAAGADGLMIEVHPE 235 (266)
T ss_pred EEeCCCcccchhhHHHHHHHHHHcCCCEEEEeccCC
Confidence 99543222 4567788999999999987653
|
|
| >PRK05835 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=91.15 E-value=7.1 Score=37.42 Aligned_cols=109 Identities=19% Similarity=0.196 Sum_probs=74.1
Q ss_pred cCHHHHHHHH-HcCCcEEEEcc---CCCCCCCCchh--hHHHHHHHHHHccCCCcEEEecCCCCHH--------------
Q 019244 208 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPA--TIMALEEVVKATQGRIPVFLDGGVRRGT-------------- 267 (344)
Q Consensus 208 ~~~~~a~~~~-~~G~d~I~v~~---~gG~~~~~g~~--~~~~l~~i~~~~~~~~~via~GGIr~g~-------------- 267 (344)
.+|++|+... +.|+|.+-++- ||-+... +.| .++.|.+|++.+ ++|+..=||=..+.
T Consensus 155 TdPeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~-~~p~L~f~~L~~I~~~~--~iPLVLHGgSGip~e~~~~~~~~g~~~~ 231 (307)
T PRK05835 155 VNPKEAEQFVKESQVDYLAPAIGTSHGAFKFK-GEPKLDFERLQEVKRLT--NIPLVLHGASAIPDDVRKSYLDAGGDLK 231 (307)
T ss_pred CCHHHHHHHHHhhCCCEEEEccCccccccCCC-CCCccCHHHHHHHHHHh--CCCEEEeCCCCCchHHhhhhhhhccccc
Confidence 4688887766 57999998874 4432111 333 467899998877 79999988766665
Q ss_pred --------HHHHHHHcCCCEEEEchHHHHHhhh-------cC------hHHHHHHHHHHHHHHHHHHHHhCCC
Q 019244 268 --------DVFKALALGASGIFIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 319 (344)
Q Consensus 268 --------dv~kalalGAd~V~ig~~~l~~~~~-------~G------~~~v~~~l~~l~~el~~~m~~~G~~ 319 (344)
++.|++.+|..=|-+++-+..+... .. ..-.....+.+++..+..|..+|+.
T Consensus 232 ~~~g~~~e~~~kai~~GI~KiNi~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 304 (307)
T PRK05835 232 GSKGVPFEFLQESVKGGINKVNTDTDLRIAFIAEVRKVANEDKSQFDLRKFFSPAQLALKNVVKERMKLLGSA 304 (307)
T ss_pred cccCCCHHHHHHHHHcCceEEEeChHHHHHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 7999999999999999987554221 00 1113334455666777777777754
|
|
| >PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF | Back alignment and domain information |
|---|
Probab=91.10 E-value=2.1 Score=38.50 Aligned_cols=93 Identities=20% Similarity=0.325 Sum_probs=56.9
Q ss_pred CCCcHHHHHHHHHhc-CCcEEEEee----cCHHH-HHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcE
Q 019244 184 RSLSWKDVKWLQTIT-KLPILVKGV----LTAED-ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 257 (344)
Q Consensus 184 ~~~~~~~i~~i~~~~-~~PvivK~v----~~~~~-a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~v 257 (344)
..++.+.++++.+.. +.|+.+--. .+++. .+.+.+.|++.|-.||.... . ...++.|.++.+..++++.|
T Consensus 98 g~iD~~~~~~Li~~a~~~~~tFHRAfD~~~d~~~al~~L~~lG~~rVLTSGg~~~-a---~~g~~~L~~lv~~a~~~i~I 173 (201)
T PF03932_consen 98 GEIDEEALEELIEAAGGMPVTFHRAFDEVPDPEEALEQLIELGFDRVLTSGGAPT-A---LEGIENLKELVEQAKGRIEI 173 (201)
T ss_dssp SSB-HHHHHHHHHHHTTSEEEE-GGGGGSSTHHHHHHHHHHHT-SEEEESTTSSS-T---TTCHHHHHHHHHHHTTSSEE
T ss_pred CCcCHHHHHHHHHhcCCCeEEEeCcHHHhCCHHHHHHHHHhcCCCEEECCCCCCC-H---HHHHHHHHHHHHHcCCCcEE
Confidence 345666677777665 677776543 33443 56788999999987653222 1 12345566665555678999
Q ss_pred EEecCCCCHHHHHHHHH-cCCCEEE
Q 019244 258 FLDGGVRRGTDVFKALA-LGASGIF 281 (344)
Q Consensus 258 ia~GGIr~g~dv~kala-lGAd~V~ 281 (344)
++.|||+ ...+.+.++ .|+..+=
T Consensus 174 m~GgGv~-~~nv~~l~~~tg~~~~H 197 (201)
T PF03932_consen 174 MPGGGVR-AENVPELVEETGVREIH 197 (201)
T ss_dssp EEESS---TTTHHHHHHHHT-SEEE
T ss_pred EecCCCC-HHHHHHHHHhhCCeEEe
Confidence 9999998 466777776 8887653
|
A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B. |
| >cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins | Back alignment and domain information |
|---|
Probab=91.09 E-value=3 Score=40.23 Aligned_cols=94 Identities=20% Similarity=0.163 Sum_probs=57.1
Q ss_pred HHHHHHHhcCCcEEEEee-cCHH----HHHHHHHcCCcEEEEccCC-C-CCCCCch----hhHHHHHHHHHHccCCCcEE
Q 019244 190 DVKWLQTITKLPILVKGV-LTAE----DARIAVQAGAAGIIVSNHG-A-RQLDYVP----ATIMALEEVVKATQGRIPVF 258 (344)
Q Consensus 190 ~i~~i~~~~~~PvivK~v-~~~~----~a~~~~~~G~d~I~v~~~g-G-~~~~~g~----~~~~~l~~i~~~~~~~~~vi 258 (344)
.++..++..+.||++-.. .+++ -++.+.++|+|+|.+--.. . +....+. ...+.+..+++.+ ++||+
T Consensus 90 ~i~~~~~~~~~pvi~si~g~~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~--~iPv~ 167 (325)
T cd04739 90 LIRRAKRAVSIPVIASLNGVSAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAV--TIPVA 167 (325)
T ss_pred HHHHHHhccCCeEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhcc--CCCEE
Confidence 455555555789988764 3443 3677788999999984321 1 1000111 1234455555544 68888
Q ss_pred E--ecCCCCHHHHHHHH-HcCCCEEEEchH
Q 019244 259 L--DGGVRRGTDVFKAL-ALGASGIFIGRP 285 (344)
Q Consensus 259 a--~GGIr~g~dv~kal-alGAd~V~ig~~ 285 (344)
+ +..+....++++++ ..|||++.+...
T Consensus 168 vKl~p~~~~~~~~a~~l~~~Gadgi~~~nt 197 (325)
T cd04739 168 VKLSPFFSALAHMAKQLDAAGADGLVLFNR 197 (325)
T ss_pred EEcCCCccCHHHHHHHHHHcCCCeEEEEcC
Confidence 7 44555667777765 589999987654
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive. |
| >TIGR00167 cbbA ketose-bisphosphate aldolases | Back alignment and domain information |
|---|
Probab=91.03 E-value=6.8 Score=37.20 Aligned_cols=108 Identities=25% Similarity=0.328 Sum_probs=75.4
Q ss_pred cCHHHHHHHH-HcCCcEEEEcc---CCCCCCCCchh--hHHHHHHHHHHccCCCcEEEecCCCCH-HHHHHHHHcCCCEE
Q 019244 208 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPA--TIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGI 280 (344)
Q Consensus 208 ~~~~~a~~~~-~~G~d~I~v~~---~gG~~~~~g~~--~~~~l~~i~~~~~~~~~via~GGIr~g-~dv~kalalGAd~V 280 (344)
.+|++|+... +-|+|.+-|+. ||-+. ..|. .++.|.+|++.+ ++|+..=||=..+ +++.|++.+|..=|
T Consensus 158 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~--~~p~~Ld~~~L~~I~~~v--~vPLVlHGgSG~~~e~~~~ai~~Gi~Ki 233 (288)
T TIGR00167 158 TDPEEAKEFVKLTGVDSLAAAIGNVHGVYK--GEPKGLDFERLEEIQKYV--NLPLVLHGGSGIPDEEIKKAISLGVVKV 233 (288)
T ss_pred CCHHHHHHHHhccCCcEEeeccCccccccC--CCCCccCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHcCCeEE
Confidence 4678887766 47999999874 55431 2232 567899998887 7999998877777 57888999999999
Q ss_pred EEchHHHHHhhh-------cC------hHHHHHHHHHHHHHHHHHHHHhCCC
Q 019244 281 FIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 319 (344)
Q Consensus 281 ~ig~~~l~~~~~-------~G------~~~v~~~l~~l~~el~~~m~~~G~~ 319 (344)
-+++-+..+... .. ..-.....+.+++.++..|..+|+.
T Consensus 234 Ni~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 285 (288)
T TIGR00167 234 NIDTELQIAFAAAVRNYYAENKDYYDPRVWLRPGEKAMKEVVLEKIKLFGSA 285 (288)
T ss_pred EcChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999987554211 00 0123344456677777777777764
|
fructose-bisphosphate and tagatose-bisphosphate aldolase. |
| >TIGR03569 NeuB_NnaB N-acetylneuraminate synthase | Back alignment and domain information |
|---|
Probab=91.02 E-value=16 Score=35.43 Aligned_cols=126 Identities=16% Similarity=0.162 Sum_probs=69.6
Q ss_pred cHHHHHHHHHhcCCcEEEEeec-CHHHH----HHHHHcCCc---EEEEccCCCCCCC--CchhhHHHHHHHHHHccCCCc
Q 019244 187 SWKDVKWLQTITKLPILVKGVL-TAEDA----RIAVQAGAA---GIIVSNHGARQLD--YVPATIMALEEVVKATQGRIP 256 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v~-~~~~a----~~~~~~G~d---~I~v~~~gG~~~~--~g~~~~~~l~~i~~~~~~~~~ 256 (344)
++..|+.+.+ +++||++|..+ +.++. ..+.+.|.+ .+.+ |..+... .....+..++.+++.. .+|
T Consensus 122 n~pLL~~~A~-~gkPvilStGmatl~Ei~~Av~~i~~~G~~~~~i~ll--hC~s~YP~~~~~~nL~~I~~Lk~~f--~~p 196 (329)
T TIGR03569 122 NAPLLKKIAR-FGKPVILSTGMATLEEIEAAVGVLRDAGTPDSNITLL--HCTTEYPAPFEDVNLNAMDTLKEAF--DLP 196 (329)
T ss_pred CHHHHHHHHh-cCCcEEEECCCCCHHHHHHHHHHHHHcCCCcCcEEEE--EECCCCCCCcccCCHHHHHHHHHHh--CCC
Confidence 5677888877 59999999764 55553 345567875 3333 2211111 1112345566555555 588
Q ss_pred EEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcChHHH----HHHHHHHHHHHHHHHHHhCCC
Q 019244 257 VFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGV----RRVLEMLREEFELAMALSGCR 319 (344)
Q Consensus 257 via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~~v----~~~l~~l~~el~~~m~~~G~~ 319 (344)
|..|+=-..-.=...|.++||+ +|=+.|-..-+..|.+.. -+-+..|.++++.+-..+|..
T Consensus 197 VG~SdHt~G~~~~~aAvalGA~--iIEkH~tldk~~~G~D~~~Sl~p~el~~lv~~ir~~~~~lG~~ 261 (329)
T TIGR03569 197 VGYSDHTLGIEAPIAAVALGAT--VIEKHFTLDKNLPGPDHKASLEPDELKEMVQGIRNVEKALGDG 261 (329)
T ss_pred EEECCCCccHHHHHHHHHcCCC--EEEeCCChhhcCCCCChhhcCCHHHHHHHHHHHHHHHHHcCCC
Confidence 8886511112233467889999 445544322122232210 123567777788888888864
|
This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine. |
| >TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase | Back alignment and domain information |
|---|
Probab=90.93 E-value=3.2 Score=38.80 Aligned_cols=97 Identities=25% Similarity=0.384 Sum_probs=60.9
Q ss_pred cHHHHHHHHHhcCCcEEEEeec--CHHH----HHHHHHcCCcEEEEccCCCCCCCC---chhhHHHHHHHHHHccCCCcE
Q 019244 187 SWKDVKWLQTITKLPILVKGVL--TAED----ARIAVQAGAAGIIVSNHGARQLDY---VPATIMALEEVVKATQGRIPV 257 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v~--~~~~----a~~~~~~G~d~I~v~~~gG~~~~~---g~~~~~~l~~i~~~~~~~~~v 257 (344)
+.+.++.+.+ +++||++|..+ +.++ +..+.+.|.+-|.+.-.|-+..+. -...+..+..+++.. .+||
T Consensus 121 n~~LL~~~a~-~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~l~~rG~s~y~~~~~~~~dl~~i~~lk~~~--~~pV 197 (260)
T TIGR01361 121 NFELLKEVGK-QGKPVLLKRGMGNTIEEWLYAAEYILSSGNGNVILCERGIRTFEKATRNTLDLSAVPVLKKET--HLPI 197 (260)
T ss_pred CHHHHHHHhc-CCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEECCCCCCCCCCcCCcCHHHHHHHHHhh--CCCE
Confidence 3456777755 59999999863 5666 345667888766664222222211 123456677776554 6999
Q ss_pred EEe----cCCCC--HHHHHHHHHcCCCEEEEchHH
Q 019244 258 FLD----GGVRR--GTDVFKALALGASGIFIGRPV 286 (344)
Q Consensus 258 ia~----GGIr~--g~dv~kalalGAd~V~ig~~~ 286 (344)
+.+ +|.|. ..-...|+++||+++++-+.+
T Consensus 198 ~~ds~Hs~G~r~~~~~~~~aAva~Ga~gl~iE~H~ 232 (260)
T TIGR01361 198 IVDPSHAAGRRDLVIPLAKAAIAAGADGLMIEVHP 232 (260)
T ss_pred EEcCCCCCCccchHHHHHHHHHHcCCCEEEEEeCC
Confidence 993 34322 233447889999999998765
|
The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis. |
| >PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF | Back alignment and domain information |
|---|
Probab=90.92 E-value=2.2 Score=38.29 Aligned_cols=70 Identities=27% Similarity=0.359 Sum_probs=46.1
Q ss_pred cCHHHHHHHHHcCCcEEEEccC---CCCCCCCchhhHHHHHHHHHHccCCCcEEEe-----cCCCCH--------HHHHH
Q 019244 208 LTAEDARIAVQAGAAGIIVSNH---GARQLDYVPATIMALEEVVKATQGRIPVFLD-----GGVRRG--------TDVFK 271 (344)
Q Consensus 208 ~~~~~a~~~~~~G~d~I~v~~~---gG~~~~~g~~~~~~l~~i~~~~~~~~~via~-----GGIr~g--------~dv~k 271 (344)
.+.+++..+.+.|||-|-+..+ ||. -|+...+..+.+.. ++||.+. |++... .|+..
T Consensus 8 ~s~~~a~~A~~~GAdRiELc~~l~~GGl-----TPS~g~i~~~~~~~--~ipv~vMIRpr~gdF~Ys~~E~~~M~~dI~~ 80 (201)
T PF03932_consen 8 ESLEDALAAEAGGADRIELCSNLEVGGL-----TPSLGLIRQAREAV--DIPVHVMIRPRGGDFVYSDEEIEIMKEDIRM 80 (201)
T ss_dssp SSHHHHHHHHHTT-SEEEEEBTGGGT-B--------HHHHHHHHHHT--TSEEEEE--SSSS-S---HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCEEEECCCccCCCc-----CcCHHHHHHHHhhc--CCceEEEECCCCCCccCCHHHHHHHHHHHHH
Confidence 6899999999999999998642 332 46677788887755 6888774 333322 57778
Q ss_pred HHHcCCCEEEEch
Q 019244 272 ALALGASGIFIGR 284 (344)
Q Consensus 272 alalGAd~V~ig~ 284 (344)
+..+|||.+.+|-
T Consensus 81 ~~~~GadG~VfG~ 93 (201)
T PF03932_consen 81 LRELGADGFVFGA 93 (201)
T ss_dssp HHHTT-SEEEE--
T ss_pred HHHcCCCeeEEEe
Confidence 8889999999993
|
A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B. |
| >TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase | Back alignment and domain information |
|---|
Probab=90.92 E-value=0.52 Score=42.48 Aligned_cols=40 Identities=25% Similarity=0.398 Sum_probs=36.1
Q ss_pred cHHHHHHHHHhcCCcEEEEe-ecCHHHHHHHHHcCCcEEEE
Q 019244 187 SWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIV 226 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~-v~~~~~a~~~~~~G~d~I~v 226 (344)
+.+.++.+++.+++|+++.+ +.++++++.+.++|+|+|++
T Consensus 164 ~~e~i~~Vk~~~~~Pv~vGGGIrs~e~a~~l~~~GAD~VVV 204 (205)
T TIGR01769 164 NPETISLVKKASGIPLIVGGGIRSPEIAYEIVLAGADAIVT 204 (205)
T ss_pred CHHHHHHHHHhhCCCEEEeCCCCCHHHHHHHHHcCCCEEEe
Confidence 56789999999999999987 47999999999999999987
|
This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum. |
| >PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=90.87 E-value=2.7 Score=39.54 Aligned_cols=128 Identities=20% Similarity=0.313 Sum_probs=75.9
Q ss_pred cHHHHHHHHHhcCCcEEEEee--cCHHH----HHHHHHcCCcEEEEccCCCCC-CCCchhhHHHHHHHHHHccCCCcEEE
Q 019244 187 SWKDVKWLQTITKLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQ-LDYVPATIMALEEVVKATQGRIPVFL 259 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v--~~~~~----a~~~~~~G~d~I~v~~~gG~~-~~~g~~~~~~l~~i~~~~~~~~~via 259 (344)
+.+.++++.+ ++.||.+|-- +++++ ++.+.+.|-.-|.+.-.|=+. ...-...+..++.+++.. ..+|||.
T Consensus 119 ntdLL~a~~~-t~kpV~lKrGqf~s~~e~~~aae~i~~~Gn~~vilcERG~~fgy~~~~~D~~~ip~mk~~~-t~lPVi~ 196 (281)
T PRK12457 119 QTDLVVAIAK-TGKPVNIKKPQFMSPTQMKHVVSKCREAGNDRVILCERGSSFGYDNLVVDMLGFRQMKRTT-GDLPVIF 196 (281)
T ss_pred hHHHHHHHhc-cCCeEEecCCCcCCHHHHHHHHHHHHHcCCCeEEEEeCCCCCCCCCcccchHHHHHHHhhC-CCCCEEE
Confidence 3456666655 5899999987 78876 677888999999987665431 111123455666665532 2689998
Q ss_pred e---------------cCCCCHHH--HHHHHHcCCCEEEEchHHHH--HhhhcChHH-HHHHHHHHHHHHHHHHHHhC
Q 019244 260 D---------------GGVRRGTD--VFKALALGASGIFIGRPVVY--SLAAEGEKG-VRRVLEMLREEFELAMALSG 317 (344)
Q Consensus 260 ~---------------GGIr~g~d--v~kalalGAd~V~ig~~~l~--~~~~~G~~~-v~~~l~~l~~el~~~m~~~G 317 (344)
| ||-|.--- +..+++.|||++++-..--- ++ ++|... --+.++.+.++++.+-...+
T Consensus 197 DpSHsvq~p~~~g~~s~G~re~v~~larAAvA~GaDGl~iEvHpdP~~Al-sDg~q~l~~~~~~~l~~~l~~i~~~~~ 273 (281)
T PRK12457 197 DVTHSLQCRDPLGAASGGRRRQVLDLARAGMAVGLAGLFLEAHPDPDRAR-CDGPSALPLDQLEPFLSQVKALDDLVK 273 (281)
T ss_pred eCCccccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCEEEEEecCCccccC-CCcccccCHHHHHHHHHHHHHHHHHHc
Confidence 6 45443222 33677899999998863211 11 234321 11234555555555544443
|
|
| >PRK03903 transaldolase; Provisional | Back alignment and domain information |
|---|
Probab=90.43 E-value=7.5 Score=36.63 Aligned_cols=104 Identities=16% Similarity=0.163 Sum_probs=67.5
Q ss_pred HHHHHHHhcCCcEEEEeecCHHHHHHHH---HcCCcE------EEEccCCCCC---CCC--------chhhHHHHHHHHH
Q 019244 190 DVKWLQTITKLPILVKGVLTAEDARIAV---QAGAAG------IIVSNHGARQ---LDY--------VPATIMALEEVVK 249 (344)
Q Consensus 190 ~i~~i~~~~~~PvivK~v~~~~~a~~~~---~~G~d~------I~v~~~gG~~---~~~--------g~~~~~~l~~i~~ 249 (344)
.++.+.+. ++++-+=.+.|.+.+..+. ..|++. -++|-.-||- .+. +...+....++.+
T Consensus 89 Ai~~L~~~-GI~vn~TliFS~~Qa~~~a~A~~~Ga~~~~~~~~sviS~fVgRiD~~~d~~l~~~~l~~~~gIa~a~~~y~ 167 (274)
T PRK03903 89 AMSALMKK-GISVNATLIFSPEQAKECAEALNEGLKKNTKDPKAVISVFVSRFDRLLDPKLAPKNLQAKSGIMNATKCYN 167 (274)
T ss_pred HHHHHHHC-CCcEEEeeecCHHHHHHHHHHHHcCcccccccCCceeeeecchHhhhcccccccccccccHHHHHHHHHHH
Confidence 34455443 7898888889999988844 459865 1223233332 111 1123333344432
Q ss_pred ---Hc--cCCCcEEEecCCCC----HHHHHHHHHcCCCEEEEchHHHHHhhhcC
Q 019244 250 ---AT--QGRIPVFLDGGVRR----GTDVFKALALGASGIFIGRPVVYSLAAEG 294 (344)
Q Consensus 250 ---~~--~~~~~via~GGIr~----g~dv~kalalGAd~V~ig~~~l~~~~~~G 294 (344)
.. ...-.+++|-|+++ ..++++++..|++.+-+.-..+.++..+|
T Consensus 168 ~~~~~g~~~~riL~AStg~Kn~~~~~~~yv~~L~~g~~v~T~P~~tl~a~~~hg 221 (274)
T PRK03903 168 QIEQHANKNIRTLFASTGVKGDDLPKDYYIKELLFKNSINTAPLDTIEAFLKDG 221 (274)
T ss_pred HHHHcCCCCcEEEEEecccCCCCCChHHHHHHHhCCCCeeeCCHHHHHHHHhcC
Confidence 22 12456788889999 99999999999999999988888876654
|
|
| >cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=90.39 E-value=3.4 Score=40.26 Aligned_cols=83 Identities=24% Similarity=0.293 Sum_probs=59.2
Q ss_pred CCcEEEEee------cCHHHHHHHHHcCCcEEEEccC---CC-C--------CCC-------------------------
Q 019244 199 KLPILVKGV------LTAEDARIAVQAGAAGIIVSNH---GA-R--------QLD------------------------- 235 (344)
Q Consensus 199 ~~PvivK~v------~~~~~a~~~~~~G~d~I~v~~~---gG-~--------~~~------------------------- 235 (344)
+.|+++-.- .+.+..+++.++|+++|+++-- .| | +..
T Consensus 117 ~~~~w~Qly~~~d~~~~~~l~~ra~~ag~~alvltvD~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (344)
T cd02922 117 DQPLFFQLYVNKDRTKTEELLKRAEKLGAKAIFLTVDAPVLGKRERDERLKAEEAVSDGPAGKKTKAKGGGAGRAMSGFI 196 (344)
T ss_pred CCcEEEEEeecCCHHHHHHHHHHHHHcCCCEEEEECCCCCcCcchhhhhhcCCcCccccccccccccccchHHHHHhhcc
Confidence 368877553 2346678999999999999631 11 1 000
Q ss_pred CchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEch
Q 019244 236 YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 284 (344)
Q Consensus 236 ~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~ 284 (344)
.+..+++.+.++++.. ++||++- ||.+.+|+.++...|+|++.+..
T Consensus 197 ~~~~~~~~i~~l~~~~--~~PvivK-gv~~~~dA~~a~~~G~d~I~vsn 242 (344)
T cd02922 197 DPTLTWDDIKWLRKHT--KLPIVLK-GVQTVEDAVLAAEYGVDGIVLSN 242 (344)
T ss_pred CCCCCHHHHHHHHHhc--CCcEEEE-cCCCHHHHHHHHHcCCCEEEEEC
Confidence 0124566777777765 7899987 68899999999999999999875
|
FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit. |
| >KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=90.38 E-value=3.4 Score=40.08 Aligned_cols=44 Identities=23% Similarity=0.601 Sum_probs=37.9
Q ss_pred CCCcHHHHHHHHHhcC-CcEEEEe-ecCHHHHHHHHH-cCCcEEEEc
Q 019244 184 RSLSWKDVKWLQTITK-LPILVKG-VLTAEDARIAVQ-AGAAGIIVS 227 (344)
Q Consensus 184 ~~~~~~~i~~i~~~~~-~PvivK~-v~~~~~a~~~~~-~G~d~I~v~ 227 (344)
+..+|+.|+.|++... +||++-| +.+.+|+..+.+ -|+|+|-+.
T Consensus 187 ~pad~~~i~~v~~~~~~ipviaNGnI~~~~d~~~~~~~tG~dGVM~a 233 (358)
T KOG2335|consen 187 GPADWEAIKAVRENVPDIPVIANGNILSLEDVERCLKYTGADGVMSA 233 (358)
T ss_pred CCcCHHHHHHHHHhCcCCcEEeeCCcCcHHHHHHHHHHhCCceEEec
Confidence 3458999999999997 9999876 589999999888 999999764
|
|
| >PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B | Back alignment and domain information |
|---|
Probab=90.35 E-value=2.6 Score=38.82 Aligned_cols=84 Identities=31% Similarity=0.379 Sum_probs=55.8
Q ss_pred CCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCC----CCCCchhhH----HHHHHHHHHccCCCcEEEec--CCCC-HH
Q 019244 199 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----QLDYVPATI----MALEEVVKATQGRIPVFLDG--GVRR-GT 267 (344)
Q Consensus 199 ~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~----~~~~g~~~~----~~l~~i~~~~~~~~~via~G--GIr~-g~ 267 (344)
+.|+++-++-+.-.|+.+.++|.+++.+|+++=. ..|.+.-++ +.+..|...+ ++||++|+ |..+ +.
T Consensus 8 ~~~l~~p~~~D~~SAr~~e~~Gf~ai~~sg~~~a~s~G~pD~~~lt~~e~~~~~~~I~~~~--~iPv~vD~d~GyG~~~~ 85 (238)
T PF13714_consen 8 GKPLVLPNVWDALSARLAERAGFDAIATSGAGVAASLGYPDGGLLTLTEMLAAVRRIARAV--SIPVIVDADTGYGNDPE 85 (238)
T ss_dssp SSSEEEEEESSHHHHHHHHHTT-SEEEEHHHHHHHHTTS-SSS-S-HHHHHHHHHHHHHHS--SSEEEEE-TTTSSSSHH
T ss_pred CCcEEeCCCcCHHHHHHHHHcCCCEEEechHHHHHHcCCCCCCCCCHHHHHHHHHHHHhhh--cCcEEEEcccccCchhH
Confidence 4799999999999999999999999999864210 134343333 3455555555 79999976 6666 43
Q ss_pred HH----HHHHHcCCCEEEEch
Q 019244 268 DV----FKALALGASGIFIGR 284 (344)
Q Consensus 268 dv----~kalalGAd~V~ig~ 284 (344)
++ .+...+||.++.|--
T Consensus 86 ~v~~tv~~~~~aG~agi~IED 106 (238)
T PF13714_consen 86 NVARTVRELERAGAAGINIED 106 (238)
T ss_dssp HHHHHHHHHHHCT-SEEEEES
T ss_pred HHHHHHHHHHHcCCcEEEeec
Confidence 43 455668999998853
|
... |
| >PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=90.30 E-value=4.2 Score=38.51 Aligned_cols=46 Identities=17% Similarity=0.441 Sum_probs=39.8
Q ss_pred CCCCcHHHHHHHHHhcCCcEEEEee--cCHHHHHHHHHcCCcEEEEcc
Q 019244 183 DRSLSWKDVKWLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVSN 228 (344)
Q Consensus 183 ~~~~~~~~i~~i~~~~~~PvivK~v--~~~~~a~~~~~~G~d~I~v~~ 228 (344)
.+.++|+.+++|++.+++|+++-|. .+.++.+++.+.|+.-|-++.
T Consensus 186 ~p~Ld~~~L~~i~~~~~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T 233 (284)
T PRK12857 186 EPKLDFDRLAKIKELVNIPIVLHGSSGVPDEAIRKAISLGVRKVNIDT 233 (284)
T ss_pred CCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHcCCeEEEeCc
Confidence 3567899999999999999999886 567889999999999998853
|
|
| >PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=90.25 E-value=9.8 Score=36.08 Aligned_cols=106 Identities=19% Similarity=0.310 Sum_probs=71.9
Q ss_pred cCHHHHHHHH-HcCCcEEEEcc---CCCCCCCCchh--hHHHHHHHHHHccCCCcEEEec--CCCCHHHHHHHHHcCCCE
Q 019244 208 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPA--TIMALEEVVKATQGRIPVFLDG--GVRRGTDVFKALALGASG 279 (344)
Q Consensus 208 ~~~~~a~~~~-~~G~d~I~v~~---~gG~~~~~g~~--~~~~l~~i~~~~~~~~~via~G--GIr~g~dv~kalalGAd~ 279 (344)
.+|++|+... +-|+|.+-|+. ||-+ .+.| .++.|.+|++.+ ++|+..=| |+. -+++.|++.+|..=
T Consensus 155 T~peea~~Fv~~TgvD~LAvaiGt~HG~Y---~~~p~Ldfd~l~~I~~~~--~vPLVLHGgSG~~-~e~~~kai~~GI~K 228 (286)
T PRK12738 155 TDPQEAKRFVELTGVDSLAVAIGTAHGLY---SKTPKIDFQRLAEIREVV--DVPLVLHGASDVP-DEFVRRTIELGVTK 228 (286)
T ss_pred CCHHHHHHHHHHhCCCEEEeccCcccCCC---CCCCcCCHHHHHHHHHHh--CCCEEEeCCCCCC-HHHHHHHHHcCCeE
Confidence 4688887766 57999999874 5543 2223 467899998887 78988866 454 56777899999999
Q ss_pred EEEchHHHHHhhh-------cC------hHHHHHHHHHHHHHHHHHHHHhCCC
Q 019244 280 IFIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 319 (344)
Q Consensus 280 V~ig~~~l~~~~~-------~G------~~~v~~~l~~l~~el~~~m~~~G~~ 319 (344)
|-+++-+..+... .. ..-.....+.+++-++..|..+|+.
T Consensus 229 iNi~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 281 (286)
T PRK12738 229 VNVATELKIAFAGAVKAWFAENPQGNDPRYYMRVGMDAMKEVVRNKINVCGSA 281 (286)
T ss_pred EEeCcHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999987654321 00 0113334455667777777777754
|
|
| >PRK08610 fructose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=90.16 E-value=8.8 Score=36.41 Aligned_cols=107 Identities=20% Similarity=0.260 Sum_probs=73.0
Q ss_pred cCHHHHHHHH-HcCCcEEEEcc---CCCCCCCCchh--hHHHHHHHHHHccCCCcEEEecCCCCH-HHHHHHHHcCCCEE
Q 019244 208 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPA--TIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGI 280 (344)
Q Consensus 208 ~~~~~a~~~~-~~G~d~I~v~~---~gG~~~~~g~~--~~~~l~~i~~~~~~~~~via~GGIr~g-~dv~kalalGAd~V 280 (344)
.+|++|+... +-|+|.+-|+. ||-+ .+.| .++.|.+|++.+ ++|+..=||=..+ +++.|++.+|..=|
T Consensus 156 T~peea~~Fv~~TgvD~LAvaiGt~HG~Y---~~~p~Ld~~~L~~I~~~~--~vPLVLHGgSG~~~e~~~~ai~~GI~Ki 230 (286)
T PRK08610 156 ADPKECQELVEKTGIDALAPALGSVHGPY---KGEPKLGFKEMEEIGLST--GLPLVLHGGTGIPTKDIQKAIPFGTAKI 230 (286)
T ss_pred CCHHHHHHHHHHHCCCEEEeecccccccc---CCCCCCCHHHHHHHHHHH--CCCEEEeCCCCCCHHHHHHHHHCCCeEE
Confidence 5788887765 57999999874 4432 2333 467899998877 7999998877766 66778999999999
Q ss_pred EEchHHHHHhhh-------cC------hHHHHHHHHHHHHHHHHHHHHhCCC
Q 019244 281 FIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 319 (344)
Q Consensus 281 ~ig~~~l~~~~~-------~G------~~~v~~~l~~l~~el~~~m~~~G~~ 319 (344)
-+++-+-.+... .. ..-.....+.+++.++..|..+|+.
T Consensus 231 Ni~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~fgs~ 282 (286)
T PRK08610 231 NVNTENQIASAKAVRDVLNNDKEVYDPRKYLGPAREAIKETVKGKIKEFGTS 282 (286)
T ss_pred EeccHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999987543210 00 0112334455666677777777654
|
|
| >cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases | Back alignment and domain information |
|---|
Probab=90.14 E-value=7.9 Score=36.52 Aligned_cols=107 Identities=26% Similarity=0.365 Sum_probs=72.6
Q ss_pred cCHHHHHHHH-HcCCcEEEEcc---CCCCCCCCchh--hHHHHHHHHHHccCCCcEEEecCCCCH-HHHHHHHHcCCCEE
Q 019244 208 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPA--TIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGI 280 (344)
Q Consensus 208 ~~~~~a~~~~-~~G~d~I~v~~---~gG~~~~~g~~--~~~~l~~i~~~~~~~~~via~GGIr~g-~dv~kalalGAd~V 280 (344)
.+|++++... +.|+|.+-++. ||-+. .+.| .++.|.++.+.+ ++|+..=||=..+ +++.|++.+|..=+
T Consensus 148 T~pe~a~~Fv~~TgvD~LAvsiGt~HG~Y~--~~~p~L~~~~L~~i~~~~--~vPLVlHGgSG~~~e~~~~ai~~Gi~Ki 223 (276)
T cd00947 148 TDPEEAEEFVEETGVDALAVAIGTSHGAYK--GGEPKLDFDRLKEIAERV--NVPLVLHGGSGIPDEQIRKAIKLGVCKI 223 (276)
T ss_pred CCHHHHHHHHHHHCCCEEEeccCccccccC--CCCCccCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHcCCeEE
Confidence 4688887766 46999999874 55331 1233 467899999888 7999998877777 45888999999999
Q ss_pred EEchHHHHHhhh-------cC------hHHHHHHHHHHHHHHHHHHHHhCC
Q 019244 281 FIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGC 318 (344)
Q Consensus 281 ~ig~~~l~~~~~-------~G------~~~v~~~l~~l~~el~~~m~~~G~ 318 (344)
-+++.+..+... .. ..-.....+.+.+.++..|..+|+
T Consensus 224 Ni~T~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~s 274 (276)
T cd00947 224 NINTDLRLAFTAALREYLAENPKEFDPRKYLAPAIEAVKEVVKHKMELFGS 274 (276)
T ss_pred EeChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999987654221 00 011233334566666666666665
|
TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures. |
| >PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=90.14 E-value=0.64 Score=42.72 Aligned_cols=42 Identities=31% Similarity=0.440 Sum_probs=37.4
Q ss_pred cHHHHHHHHHhcCC-cEEEEe-ecCHHHHHHHHHcCCcEEEEcc
Q 019244 187 SWKDVKWLQTITKL-PILVKG-VLTAEDARIAVQAGAAGIIVSN 228 (344)
Q Consensus 187 ~~~~i~~i~~~~~~-PvivK~-v~~~~~a~~~~~~G~d~I~v~~ 228 (344)
+.+.++.+++.++. |+++.+ +.++++++.+.++|||+|+|++
T Consensus 171 ~~e~I~~v~~~~~~~pvivGGGIrs~e~a~~~l~~GAD~VVVGS 214 (232)
T PRK04169 171 PPEMVKAVKKALDITPLIYGGGIRSPEQARELMAAGADTIVVGN 214 (232)
T ss_pred CHHHHHHHHHhcCCCcEEEECCCCCHHHHHHHHHhCCCEEEECh
Confidence 57889999999888 999987 5789999999999999999965
|
|
| >TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase | Back alignment and domain information |
|---|
Probab=90.07 E-value=1.3 Score=42.07 Aligned_cols=83 Identities=20% Similarity=0.308 Sum_probs=58.5
Q ss_pred CCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCC-----CCCCchhhH----HHHHHHHHHccCCCcEEEec--CCCCHH
Q 019244 199 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR-----QLDYVPATI----MALEEVVKATQGRIPVFLDG--GVRRGT 267 (344)
Q Consensus 199 ~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~-----~~~~g~~~~----~~l~~i~~~~~~~~~via~G--GIr~g~ 267 (344)
+-|+++-++-+.-.|+.+.++|.+++.+++.+.. ..|.+.-++ ..+..|...+ ++||++|. |..+..
T Consensus 15 ~~~l~~p~v~Da~SArl~e~aGf~ai~~sg~~~~as~lG~pD~g~l~~~e~~~~~~~I~~~~--~lPv~aD~dtGyG~~~ 92 (294)
T TIGR02319 15 PEILVVPSAYDALSAKVIQQAGFPAVHMTGSGTSASMLGLPDLGFTSVSEQAINAKNIVLAV--DVPVIMDADAGYGNAM 92 (294)
T ss_pred CCcEEeecCcCHHHHHHHHHcCCCEEEecHHHHHHHHcCCCCcCCCCHHHHHHHHHHHHhcc--CCCEEEECCCCCCCcH
Confidence 4688888888899999999999999999764321 124333333 2344444444 79999965 777777
Q ss_pred HH----HHHHHcCCCEEEEc
Q 019244 268 DV----FKALALGASGIFIG 283 (344)
Q Consensus 268 dv----~kalalGAd~V~ig 283 (344)
++ -++...||.++.|-
T Consensus 93 ~v~r~V~~~~~aGaagi~IE 112 (294)
T TIGR02319 93 SVWRATREFERVGIVGYHLE 112 (294)
T ss_pred HHHHHHHHHHHcCCeEEEEE
Confidence 75 35556899998884
|
This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization. |
| >PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family | Back alignment and domain information |
|---|
Probab=89.88 E-value=0.57 Score=41.14 Aligned_cols=41 Identities=37% Similarity=0.484 Sum_probs=32.4
Q ss_pred HHHHHHHHHhcCCcEEEEe-ecCHHHHHHHHHcCCcEEEEcc
Q 019244 188 WKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSN 228 (344)
Q Consensus 188 ~~~i~~i~~~~~~PvivK~-v~~~~~a~~~~~~G~d~I~v~~ 228 (344)
.+.++++++.+++|++..| +.+.|++..+.++|+++|..|+
T Consensus 129 p~vi~~i~~~~~~PiIAGGLI~~~e~v~~al~aGa~aVSTS~ 170 (175)
T PF04309_consen 129 PKVIKKIREETNIPIIAGGLIRTKEDVEEALKAGADAVSTSN 170 (175)
T ss_dssp HHHHCCCCCCCSS-EEEESS--SHHHHHHHCCTTCEEEEE--
T ss_pred HHHHHHHHHhcCCCEEeecccCCHHHHHHHHHcCCEEEEcCC
Confidence 3568888888999999988 4789999999999999998875
|
Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G. |
| >PRK08662 nicotinate phosphoribosyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=89.83 E-value=2.9 Score=40.72 Aligned_cols=93 Identities=18% Similarity=0.244 Sum_probs=60.7
Q ss_pred HHHHHHHHhcC--CcEEEEeecC----HHHHHHHHHc---CCcEEEEccCCCCCCCCchhhHHHHHHHHHH---cc-CCC
Q 019244 189 KDVKWLQTITK--LPILVKGVLT----AEDARIAVQA---GAAGIIVSNHGARQLDYVPATIMALEEVVKA---TQ-GRI 255 (344)
Q Consensus 189 ~~i~~i~~~~~--~PvivK~v~~----~~~a~~~~~~---G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~---~~-~~~ 255 (344)
+.++.+++.++ .|+++ ++-+ .++|..+.+. |+|.|-++|.+.+ .+ ...+.+.++++. .+ .++
T Consensus 188 ~A~~~~~~~~p~~~~i~v-evdt~~~~~~~Al~~~~~~~~~~d~I~LDn~~~~---~g-~l~~~v~~vr~~ld~~g~~~v 262 (343)
T PRK08662 188 EAWKAFDEVVPPDVPRIA-LVDTFKDEREEALRAAEALGDRLDGVRLDTPSSR---RG-NFRKIVREVRWTLDIRGYEHV 262 (343)
T ss_pred HHHHHHHHHCCCCCCEEE-EEEeCCccHHHHHHHHHHhCCcCCEEEcCCCCCC---Cc-cHHHHHHHHHHHHHhcCCCCe
Confidence 35778887764 45544 3333 3667776666 8999999885410 00 112333334332 22 357
Q ss_pred cEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 256 PVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 256 ~via~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
.|.+|||| +...+.+.-.. +|.+.+|+.+..
T Consensus 263 ~IeaSGgI-~~~ni~~ya~~-vD~isvGs~~~~ 293 (343)
T PRK08662 263 KIFVSGGL-DPERIRELRDV-VDGFGVGTYISF 293 (343)
T ss_pred EEEEeCCC-CHHHHHHHHHh-CCEEEcCccccC
Confidence 89999999 68888888888 999999997754
|
|
| >TIGR03569 NeuB_NnaB N-acetylneuraminate synthase | Back alignment and domain information |
|---|
Probab=89.73 E-value=9 Score=37.09 Aligned_cols=78 Identities=18% Similarity=0.172 Sum_probs=56.7
Q ss_pred CcHHH---HHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecC
Q 019244 186 LSWKD---VKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 262 (344)
Q Consensus 186 ~~~~~---i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GG 262 (344)
+.++. +.+.++..+++++. .+.+.+.+..+.+.|++.+.|... -...+..|..+++ ...|||.+-|
T Consensus 73 l~~e~~~~L~~~~~~~Gi~~~s-tpfd~~svd~l~~~~v~~~KIaS~-------~~~n~pLL~~~A~---~gkPvilStG 141 (329)
T TIGR03569 73 LSEEDHRELKEYCESKGIEFLS-TPFDLESADFLEDLGVPRFKIPSG-------EITNAPLLKKIAR---FGKPVILSTG 141 (329)
T ss_pred CCHHHHHHHHHHHHHhCCcEEE-EeCCHHHHHHHHhcCCCEEEECcc-------cccCHHHHHHHHh---cCCcEEEECC
Confidence 44554 55555556787663 467889999999999999999532 1234566666654 2689999999
Q ss_pred CCCHHHHHHHHH
Q 019244 263 VRRGTDVFKALA 274 (344)
Q Consensus 263 Ir~g~dv~kala 274 (344)
..+-.++..|+.
T Consensus 142 matl~Ei~~Av~ 153 (329)
T TIGR03569 142 MATLEEIEAAVG 153 (329)
T ss_pred CCCHHHHHHHHH
Confidence 999999988775
|
This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine. |
| >PRK07259 dihydroorotate dehydrogenase 1B; Reviewed | Back alignment and domain information |
|---|
Probab=89.67 E-value=4.5 Score=38.30 Aligned_cols=90 Identities=21% Similarity=0.245 Sum_probs=53.8
Q ss_pred HHHHHHhcCCcEEEEee-cCHHH----HHHHHHcC-CcEEEEcc------CCCCCCCCch-hhHHHHHHHHHHccCCCcE
Q 019244 191 VKWLQTITKLPILVKGV-LTAED----ARIAVQAG-AAGIIVSN------HGARQLDYVP-ATIMALEEVVKATQGRIPV 257 (344)
Q Consensus 191 i~~i~~~~~~PvivK~v-~~~~~----a~~~~~~G-~d~I~v~~------~gG~~~~~g~-~~~~~l~~i~~~~~~~~~v 257 (344)
+...++.++.|+++-.. .++++ |+++.++| +|+|.+-- +||..+...+ ...+.+..+++.+ ++||
T Consensus 83 ~~~~~~~~~~p~i~si~g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~--~~pv 160 (301)
T PRK07259 83 ELPWLEEFDTPIIANVAGSTEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVV--KVPV 160 (301)
T ss_pred HHHHHhccCCcEEEEeccCCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc--CCCE
Confidence 33333445789998764 45544 67788999 99998832 2232221111 2234555555554 6888
Q ss_pred EEe--cCCCCHHHHHHHH-HcCCCEEEE
Q 019244 258 FLD--GGVRRGTDVFKAL-ALGASGIFI 282 (344)
Q Consensus 258 ia~--GGIr~g~dv~kal-alGAd~V~i 282 (344)
++- ..+....++++.+ +.|+|++.+
T Consensus 161 ~vKl~~~~~~~~~~a~~l~~~G~d~i~~ 188 (301)
T PRK07259 161 IVKLTPNVTDIVEIAKAAEEAGADGLSL 188 (301)
T ss_pred EEEcCCCchhHHHHHHHHHHcCCCEEEE
Confidence 873 3444556677755 489998765
|
|
| >cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases | Back alignment and domain information |
|---|
Probab=89.61 E-value=4.8 Score=38.01 Aligned_cols=46 Identities=20% Similarity=0.421 Sum_probs=39.8
Q ss_pred CCCCcHHHHHHHHHhcCCcEEEEee--cCHHHHHHHHHcCCcEEEEcc
Q 019244 183 DRSLSWKDVKWLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVSN 228 (344)
Q Consensus 183 ~~~~~~~~i~~i~~~~~~PvivK~v--~~~~~a~~~~~~G~d~I~v~~ 228 (344)
.+.++|+.+++|++.+++|+++-|. .+.++.+++.+.|+.-|-++.
T Consensus 180 ~p~L~~~~L~~i~~~~~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T 227 (276)
T cd00947 180 EPKLDFDRLKEIAERVNVPLVLHGGSGIPDEQIRKAIKLGVCKININT 227 (276)
T ss_pred CCccCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHcCCeEEEeCh
Confidence 4567899999999999999999887 567889999999999998753
|
TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures. |
| >cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds | Back alignment and domain information |
|---|
Probab=89.44 E-value=2.3 Score=39.30 Aligned_cols=84 Identities=17% Similarity=0.106 Sum_probs=55.7
Q ss_pred CCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCC----CCCchhhHHH----HHHHHHHccCCCcEEEecCCCCH---H
Q 019244 199 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ----LDYVPATIMA----LEEVVKATQGRIPVFLDGGVRRG---T 267 (344)
Q Consensus 199 ~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~----~~~g~~~~~~----l~~i~~~~~~~~~via~GGIr~g---~ 267 (344)
+-|+++=++-+.-.|+.+.++|+|.|.++++++.. .|.+.-+++. ++.|.+.. ...||++|.--.++ .
T Consensus 11 ~~~i~~~~ayD~~sA~i~e~aG~dai~v~~s~~a~~~G~pD~~~vtl~em~~~~~~I~r~~-~~~pviaD~~~G~g~~~~ 89 (240)
T cd06556 11 KERFATLTAYDYSMAKQFADAGLNVMLVGDSQGMTVAGYDDTLPYPVNDVPYHVRAVRRGA-PLALIVADLPFGAYGAPT 89 (240)
T ss_pred CCeEEEecCCCHHHHHHHHHcCCCEEEEChHHHHHhcCCCCCCCcCHHHHHHHHHHHHhhC-CCCCEEEeCCCCCCcCHH
Confidence 56888877788889999999999999998754321 2333333332 23333333 24799998643333 5
Q ss_pred H----HHHHHHcCCCEEEEc
Q 019244 268 D----VFKALALGASGIFIG 283 (344)
Q Consensus 268 d----v~kalalGAd~V~ig 283 (344)
+ +.+.+..||++|-+-
T Consensus 90 ~~~~~~~~l~~aGa~gv~iE 109 (240)
T cd06556 90 AAFELAKTFMRAGAAGVKIE 109 (240)
T ss_pred HHHHHHHHHHHcCCcEEEEc
Confidence 5 445677999999984
|
Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT). |
| >PRK10415 tRNA-dihydrouridine synthase B; Provisional | Back alignment and domain information |
|---|
Probab=89.33 E-value=4.4 Score=38.99 Aligned_cols=42 Identities=14% Similarity=0.468 Sum_probs=36.1
Q ss_pred CcHHHHHHHHHhcCCcEEEEe-ecCHHHHHHHHH-cCCcEEEEc
Q 019244 186 LSWKDVKWLQTITKLPILVKG-VLTAEDARIAVQ-AGAAGIIVS 227 (344)
Q Consensus 186 ~~~~~i~~i~~~~~~PvivK~-v~~~~~a~~~~~-~G~d~I~v~ 227 (344)
.+|+.++++++.+++||+.=+ +.++++++.+.+ .|+|+|.++
T Consensus 181 a~~~~i~~ik~~~~iPVI~nGgI~s~~da~~~l~~~gadgVmiG 224 (321)
T PRK10415 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIG 224 (321)
T ss_pred cChHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHhccCCCEEEEC
Confidence 468999999999999988755 579999999987 699999884
|
|
| >PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=89.30 E-value=4.5 Score=38.28 Aligned_cols=45 Identities=16% Similarity=0.274 Sum_probs=39.3
Q ss_pred CCCcHHHHHHHHHhcCCcEEEEee--cCHHHHHHHHHcCCcEEEEcc
Q 019244 184 RSLSWKDVKWLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVSN 228 (344)
Q Consensus 184 ~~~~~~~i~~i~~~~~~PvivK~v--~~~~~a~~~~~~G~d~I~v~~ 228 (344)
+.++++.+++|++.+++|+++-|. .+.++.+++++.|+..|-++.
T Consensus 184 p~l~~~~l~~I~~~~~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T 230 (283)
T PRK07998 184 PRIDIPLLKRIAEVSPVPLVIHGGSGIPPEILRSFVNYKVAKVNIAS 230 (283)
T ss_pred CCcCHHHHHHHHhhCCCCEEEeCCCCCCHHHHHHHHHcCCcEEEECH
Confidence 556889999999999999999886 567889999999999998853
|
|
| >TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase | Back alignment and domain information |
|---|
Probab=89.30 E-value=5.7 Score=35.20 Aligned_cols=89 Identities=25% Similarity=0.144 Sum_probs=55.3
Q ss_pred cHHHHHHHHHhc-CCcEEEEe-ecCHH--HHHHHHHcCCcEEEEccCCCCCCCCchhhH-HHHHHHHHHccCCCcEEEe-
Q 019244 187 SWKDVKWLQTIT-KLPILVKG-VLTAE--DARIAVQAGAAGIIVSNHGARQLDYVPATI-MALEEVVKATQGRIPVFLD- 260 (344)
Q Consensus 187 ~~~~i~~i~~~~-~~PvivK~-v~~~~--~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~-~~l~~i~~~~~~~~~via~- 260 (344)
..+.|+.+++.. +.++++-. ++++. +++.+.++|+|+|.+... ....++ +.+..+.+ . .+++++.
T Consensus 39 g~~~i~~l~~~~~~~~i~~d~k~~d~~~~~~~~~~~~Gad~i~vh~~------~~~~~~~~~i~~~~~-~--g~~~~~~~ 109 (206)
T TIGR03128 39 GIEAVKEMKEAFPDRKVLADLKTMDAGEYEAEQAFAAGADIVTVLGV------ADDATIKGAVKAAKK-H--GKEVQVDL 109 (206)
T ss_pred CHHHHHHHHHHCCCCEEEEEEeeccchHHHHHHHHHcCCCEEEEecc------CCHHHHHHHHHHHHH-c--CCEEEEEe
Confidence 356788888875 44555432 23544 689999999999987432 111122 33333332 2 5777765
Q ss_pred cCCCCH-HHHHHHHHcCCCEEEEch
Q 019244 261 GGVRRG-TDVFKALALGASGIFIGR 284 (344)
Q Consensus 261 GGIr~g-~dv~kalalGAd~V~ig~ 284 (344)
-+..+. +++..+..+|+|.|.+..
T Consensus 110 ~~~~t~~~~~~~~~~~g~d~v~~~p 134 (206)
T TIGR03128 110 INVKDKVKRAKELKELGADYIGVHT 134 (206)
T ss_pred cCCCChHHHHHHHHHcCCCEEEEcC
Confidence 344444 677778888999998853
|
at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase. |
| >PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate | Back alignment and domain information |
|---|
Probab=89.22 E-value=3.6 Score=39.07 Aligned_cols=45 Identities=22% Similarity=0.450 Sum_probs=36.9
Q ss_pred CCCCcHHHHHHHHHhc-CCcEEEEee--cCHHHHHHHHHcCCcEEEEc
Q 019244 183 DRSLSWKDVKWLQTIT-KLPILVKGV--LTAEDARIAVQAGAAGIIVS 227 (344)
Q Consensus 183 ~~~~~~~~i~~i~~~~-~~PvivK~v--~~~~~a~~~~~~G~d~I~v~ 227 (344)
.+.++++.+++|++.+ ++|+++-|. .+.++.+++.+.|+.-|-++
T Consensus 188 ~p~Ld~~~L~~I~~~~~~iPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~ 235 (287)
T PF01116_consen 188 KPKLDFDRLKEIREAVPDIPLVLHGGSGLPDEQIRKAIKNGISKINIG 235 (287)
T ss_dssp STC--HHHHHHHHHHHHTSEEEESSCTTS-HHHHHHHHHTTEEEEEES
T ss_pred CcccCHHHHHHHHHhcCCCCEEEECCCCCCHHHHHHHHHcCceEEEEe
Confidence 3456889999999999 999999886 56789999999999999874
|
There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B .... |
| >PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=89.17 E-value=12 Score=35.48 Aligned_cols=107 Identities=19% Similarity=0.291 Sum_probs=71.2
Q ss_pred cCHHHHHHHH-HcCCcEEEEcc---CCCCCCCCchh--hHHHHHHHHHHccCCCcEEEecCCCC-HHHHHHHHHcCCCEE
Q 019244 208 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPA--TIMALEEVVKATQGRIPVFLDGGVRR-GTDVFKALALGASGI 280 (344)
Q Consensus 208 ~~~~~a~~~~-~~G~d~I~v~~---~gG~~~~~g~~--~~~~l~~i~~~~~~~~~via~GGIr~-g~dv~kalalGAd~V 280 (344)
.+|++|+... +.|+|.+-|+. ||-+ .+.| .++.|.+|++.+ ++|+..=||=.. -+++.|++.+|..=|
T Consensus 155 T~peea~~Fv~~TgvD~LAvaiGt~HG~y---~~~p~Ld~~~L~~I~~~~--~vPLVLHGgSG~~~e~~~~ai~~Gi~Ki 229 (284)
T PRK09195 155 TDPAQAREFVEATGIDSLAVAIGTAHGMY---KGEPKLDFDRLENIRQWV--NIPLVLHGASGLPTKDIQQTIKLGICKV 229 (284)
T ss_pred CCHHHHHHHHHHHCcCEEeeccCcccccc---CCCCcCCHHHHHHHHHHh--CCCeEEecCCCCCHHHHHHHHHcCCeEE
Confidence 4788887766 57999999874 5543 2223 457899998887 689888664333 467788999999999
Q ss_pred EEchHHHHHhhh-------cC------hHHHHHHHHHHHHHHHHHHHHhCCC
Q 019244 281 FIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 319 (344)
Q Consensus 281 ~ig~~~l~~~~~-------~G------~~~v~~~l~~l~~el~~~m~~~G~~ 319 (344)
-+++-+..+... .. ..-.....+.+++..+..|..+|+.
T Consensus 230 Ni~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 281 (284)
T PRK09195 230 NVATELKIAFSQALKNYLTEHPEANDPRHYLQPAKSAMKDVVSKVIADCGCE 281 (284)
T ss_pred EeCcHHHHHHHHHHHHHHHhCcCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999987644210 00 0112333455666777777777753
|
|
| >PLN02495 oxidoreductase, acting on the CH-CH group of donors | Back alignment and domain information |
|---|
Probab=89.10 E-value=4.5 Score=40.05 Aligned_cols=99 Identities=16% Similarity=0.193 Sum_probs=61.2
Q ss_pred HHHHHHHHhc-CCcEEEEee--cCHHH----HHHHHHcCCcEEEEcc---CCCCCCCCch---hhHHHHHHHHHHcc--C
Q 019244 189 KDVKWLQTIT-KLPILVKGV--LTAED----ARIAVQAGAAGIIVSN---HGARQLDYVP---ATIMALEEVVKATQ--G 253 (344)
Q Consensus 189 ~~i~~i~~~~-~~PvivK~v--~~~~~----a~~~~~~G~d~I~v~~---~gG~~~~~g~---~~~~~l~~i~~~~~--~ 253 (344)
+.+..+++.+ ++|||+-.. .++++ ++++.++|+|+|.+-- |+....+.|. -..+.+.++.++++ -
T Consensus 102 ~~i~~~k~~~~~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~~ 181 (385)
T PLN02495 102 AEFKQLKEEYPDRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAKA 181 (385)
T ss_pred HHHHHHHhhCCCCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHhh
Confidence 3466777777 579999873 45544 6788899999999742 2210001111 12344544433332 1
Q ss_pred CCcEEE--ecCCCCHHHHHH-HHHcCCCEEEEchHHH
Q 019244 254 RIPVFL--DGGVRRGTDVFK-ALALGASGIFIGRPVV 287 (344)
Q Consensus 254 ~~~via--~GGIr~g~dv~k-alalGAd~V~ig~~~l 287 (344)
++||++ +-.+.+-.++++ +...|||+|.+-..+.
T Consensus 182 ~iPv~vKLsPn~t~i~~ia~aa~~~Gadgi~liNT~~ 218 (385)
T PLN02495 182 TVPVWAKMTPNITDITQPARVALKSGCEGVAAINTIM 218 (385)
T ss_pred cCceEEEeCCChhhHHHHHHHHHHhCCCEEEEecccC
Confidence 688877 666777788888 5568999998866543
|
|
| >PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=88.83 E-value=14 Score=37.33 Aligned_cols=85 Identities=20% Similarity=0.162 Sum_probs=53.5
Q ss_pred HHHHHHHHHhcC--Cc-EEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCC
Q 019244 188 WKDVKWLQTITK--LP-ILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 264 (344)
Q Consensus 188 ~~~i~~i~~~~~--~P-vivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr 264 (344)
.+.-.+|....+ .. |.--|+.|++|++.+.. |+|++-|+.. +-..+.....+.++.. ..+.| -|++
T Consensus 197 ~~~~~~l~~~ip~~~~~vseSGI~t~~d~~~~~~-~~davLiG~~----lm~~~d~~~~~~~L~~---~~vKI---CGit 265 (454)
T PRK09427 197 LNRTRELAPLIPADVIVISESGIYTHAQVRELSP-FANGFLIGSS----LMAEDDLELAVRKLIL---GENKV---CGLT 265 (454)
T ss_pred HHHHHHHHhhCCCCcEEEEeCCCCCHHHHHHHHh-cCCEEEECHH----HcCCCCHHHHHHHHhc---ccccc---CCCC
Confidence 345566666553 22 22245689999999865 7999988431 1112223334444321 12322 5799
Q ss_pred CHHHHHHHHHcCCCEEEEc
Q 019244 265 RGTDVFKALALGASGIFIG 283 (344)
Q Consensus 265 ~g~dv~kalalGAd~V~ig 283 (344)
+.+|+..+..+|||++++=
T Consensus 266 ~~eda~~a~~~GaD~lGfI 284 (454)
T PRK09427 266 RPQDAKAAYDAGAVYGGLI 284 (454)
T ss_pred CHHHHHHHHhCCCCEEeeE
Confidence 9999999999999999983
|
|
| >PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P) | Back alignment and domain information |
|---|
Probab=88.80 E-value=0.66 Score=42.52 Aligned_cols=39 Identities=31% Similarity=0.571 Sum_probs=30.5
Q ss_pred HHHHHHHhcCCcEEEEe-ecCHHHHHHHHHcCCcEEEEcc
Q 019244 190 DVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSN 228 (344)
Q Consensus 190 ~i~~i~~~~~~PvivK~-v~~~~~a~~~~~~G~d~I~v~~ 228 (344)
.++..++..+.|+++.+ +.+.+.|+.+.++|||.|+|.|
T Consensus 173 v~~~~~~~~~~~LivGGGIrs~e~A~~~~~aGAD~IVvGn 212 (230)
T PF01884_consen 173 VIAAVKKLSDIPLIVGGGIRSPEQAREMAEAGADTIVVGN 212 (230)
T ss_dssp HHHHHHHSSSSEEEEESS--SHHHHHHHHCTTSSEEEESC
T ss_pred HHHHHHhcCCccEEEeCCcCCHHHHHHHHHCCCCEEEECC
Confidence 34444444589999987 4799999999999999999976
|
This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B. |
| >PRK11572 copper homeostasis protein CutC; Provisional | Back alignment and domain information |
|---|
Probab=88.56 E-value=6.6 Score=36.44 Aligned_cols=94 Identities=16% Similarity=0.265 Sum_probs=59.8
Q ss_pred CCCcHHHHHHHHHhc-CCcEEEEee----cCHHH-HHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcE
Q 019244 184 RSLSWKDVKWLQTIT-KLPILVKGV----LTAED-ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 257 (344)
Q Consensus 184 ~~~~~~~i~~i~~~~-~~PvivK~v----~~~~~-a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~v 257 (344)
...+.+.++.+.+.. ++|+.+--. .++.. .+.+.+.|++.|-.||...+ ....++.|.++.+...+.+ |
T Consensus 99 g~vD~~~~~~Li~~a~~~~vTFHRAfD~~~d~~~al~~l~~lG~~rILTSGg~~~----a~~g~~~L~~lv~~a~~~~-I 173 (248)
T PRK11572 99 GHVDMPRMRKIMAAAGPLAVTFHRAFDMCANPLNALKQLADLGVARILTSGQQQD----AEQGLSLIMELIAASDGPI-I 173 (248)
T ss_pred CCcCHHHHHHHHHHhcCCceEEechhhccCCHHHHHHHHHHcCCCEEECCCCCCC----HHHHHHHHHHHHHhcCCCE-E
Confidence 345666777777766 577766443 23433 57799999999977643211 1223445555555544444 8
Q ss_pred EEecCCCCHHHHHHHHHcCCCEEEEc
Q 019244 258 FLDGGVRRGTDVFKALALGASGIFIG 283 (344)
Q Consensus 258 ia~GGIr~g~dv~kalalGAd~V~ig 283 (344)
++-|||+ ..++.+....|+..+=.+
T Consensus 174 m~GgGV~-~~Nv~~l~~tG~~~~H~s 198 (248)
T PRK11572 174 MAGAGVR-LSNLHKFLDAGVREVHSS 198 (248)
T ss_pred EeCCCCC-HHHHHHHHHcCCCEEeeC
Confidence 8888887 677777778999877543
|
|
| >PRK11572 copper homeostasis protein CutC; Provisional | Back alignment and domain information |
|---|
Probab=88.56 E-value=3.1 Score=38.58 Aligned_cols=70 Identities=29% Similarity=0.342 Sum_probs=52.1
Q ss_pred cCHHHHHHHHHcCCcEEEEccC---CCCCCCCchhhHHHHHHHHHHccCCCcEEE-----ecCCCCH--------HHHHH
Q 019244 208 LTAEDARIAVQAGAAGIIVSNH---GARQLDYVPATIMALEEVVKATQGRIPVFL-----DGGVRRG--------TDVFK 271 (344)
Q Consensus 208 ~~~~~a~~~~~~G~d~I~v~~~---gG~~~~~g~~~~~~l~~i~~~~~~~~~via-----~GGIr~g--------~dv~k 271 (344)
.+.+++..+.+.|||-|-+... ||. -|+...+..+++.+ ++||.+ .|++... .|+..
T Consensus 9 ~s~~~a~~A~~~GAdRiELc~~L~~GGl-----TPS~g~i~~~~~~~--~ipv~vMIRPR~gdF~Ys~~E~~~M~~di~~ 81 (248)
T PRK11572 9 YSMECALTAQQAGADRIELCAAPKEGGL-----TPSLGVLKSVRERV--TIPVHPIIRPRGGDFCYSDGEFAAMLEDIAT 81 (248)
T ss_pred CCHHHHHHHHHcCCCEEEEccCcCCCCc-----CCCHHHHHHHHHhc--CCCeEEEEecCCCCCCCCHHHHHHHHHHHHH
Confidence 7899999999999999988642 443 36667777777765 677776 3444332 46777
Q ss_pred HHHcCCCEEEEch
Q 019244 272 ALALGASGIFIGR 284 (344)
Q Consensus 272 alalGAd~V~ig~ 284 (344)
+..+|||.|.+|-
T Consensus 82 ~~~~GadGvV~G~ 94 (248)
T PRK11572 82 VRELGFPGLVTGV 94 (248)
T ss_pred HHHcCCCEEEEee
Confidence 7789999999983
|
|
| >TIGR00167 cbbA ketose-bisphosphate aldolases | Back alignment and domain information |
|---|
Probab=88.52 E-value=5.2 Score=37.99 Aligned_cols=43 Identities=19% Similarity=0.455 Sum_probs=38.1
Q ss_pred CcHHHHHHHHHhcCCcEEEEee--cCHHHHHHHHHcCCcEEEEcc
Q 019244 186 LSWKDVKWLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVSN 228 (344)
Q Consensus 186 ~~~~~i~~i~~~~~~PvivK~v--~~~~~a~~~~~~G~d~I~v~~ 228 (344)
++|+.+++|++.+++|+++-|. .+.++.+++.+.|+.-|-++.
T Consensus 193 Ld~~~L~~I~~~v~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T 237 (288)
T TIGR00167 193 LDFERLEEIQKYVNLPLVLHGGSGIPDEEIKKAISLGVVKVNIDT 237 (288)
T ss_pred cCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHcCCeEEEcCh
Confidence 7899999999999999999887 567889999999999998753
|
fructose-bisphosphate and tagatose-bisphosphate aldolase. |
| >PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional | Back alignment and domain information |
|---|
Probab=88.51 E-value=5.3 Score=38.44 Aligned_cols=113 Identities=24% Similarity=0.310 Sum_probs=68.7
Q ss_pred HHHHHHHHHcC-Ccc----ccCCHH-H---HHHHHHHHHHc---CCcEEEeccCCccccccHHHHHhhcCCCCccccccc
Q 019244 91 YATARAASAAG-TIM----VYKDRN-V---VAQLVRRAERA---GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNF 158 (344)
Q Consensus 91 ~~lA~aA~~~g-~~~----~~~d~~-~---~~~~i~~a~~a---g~~~l~~tvd~~~~g~r~~~~~~~~~~~~g~~~~~~ 158 (344)
..+|+-|++.+ +-. +..|+. . ..+.+++++.. ||..+.+..|.|....+-.++. +..+
T Consensus 153 v~~a~lare~~~~~~iKlEvi~e~~~llpd~~~~v~aa~~L~~~Gf~v~~yc~~d~~~a~~l~~~g----------~~av 222 (326)
T PRK11840 153 VRTLRLAREAGGWDLVKLEVLGDAKTLYPDMVETLKATEILVKEGFQVMVYCSDDPIAAKRLEDAG----------AVAV 222 (326)
T ss_pred HHHHHHHHHhcCCCeEEEEEcCCCCCcccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcC----------CEEE
Confidence 45777777754 333 221111 1 23456677766 9999888888887765544321 1111
Q ss_pred ccccccccccccchhhHHHHhhcCCCCCcHHHHHHHHHhcCCcEEEEe-ecCHHHHHHHHHcCCcEEEEc
Q 019244 159 QGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVS 227 (344)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~PvivK~-v~~~~~a~~~~~~G~d~I~v~ 227 (344)
..+ .+.+.. +-+-.+.+.|+.+++..++||++-. +.+++|+..+.+.|+|++-+.
T Consensus 223 mPl-------------~~pIGs-g~gv~~p~~i~~~~e~~~vpVivdAGIg~~sda~~AmelGadgVL~n 278 (326)
T PRK11840 223 MPL-------------GAPIGS-GLGIQNPYTIRLIVEGATVPVLVDAGVGTASDAAVAMELGCDGVLMN 278 (326)
T ss_pred eec-------------cccccC-CCCCCCHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEc
Confidence 100 011110 1111256678888888899998864 579999999999999999774
|
|
| >PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=88.50 E-value=8.2 Score=34.77 Aligned_cols=93 Identities=20% Similarity=0.292 Sum_probs=58.4
Q ss_pred CCCCcHHHHHHHHHhcCCcEEEEeec-CHHHHHHHHH--cCCcEEEEccC----CCC--CCCCchhhHHHHHHHHHHccC
Q 019244 183 DRSLSWKDVKWLQTITKLPILVKGVL-TAEDARIAVQ--AGAAGIIVSNH----GAR--QLDYVPATIMALEEVVKATQG 253 (344)
Q Consensus 183 ~~~~~~~~i~~i~~~~~~PvivK~v~-~~~~a~~~~~--~G~d~I~v~~~----gG~--~~~~g~~~~~~l~~i~~~~~~ 253 (344)
+++.+.+.++.+++..++++|-.... ..++...+.+ ..+|++.++.. ||+ ..|| ..+. +..
T Consensus 84 Hg~e~~~~~~~l~~~~~~~iik~i~v~~~~~l~~~~~~~~~~d~~L~Ds~~~~~GGtG~~~dw-----~~l~---~~~-- 153 (210)
T PRK01222 84 HGDETPEFCRQLKRRYGLPVIKALRVRSAGDLEAAAAYYGDADGLLLDAYVGLPGGTGKTFDW-----SLLP---AGL-- 153 (210)
T ss_pred CCCCCHHHHHHHHhhcCCcEEEEEecCCHHHHHHHHhhhccCCEEEEcCCCCCCCCCCCccch-----HHhh---hcc--
Confidence 44556677889998777786533222 3333333322 36899988753 443 2344 3331 122
Q ss_pred CCcEEEecCCCCHHHHHHHHH-cCCCEEEEchHH
Q 019244 254 RIPVFLDGGVRRGTDVFKALA-LGASGIFIGRPV 286 (344)
Q Consensus 254 ~~~via~GGIr~g~dv~kala-lGAd~V~ig~~~ 286 (344)
+.|++..|||. ++++.+++. ++..+|=+.+.+
T Consensus 154 ~~p~~LAGGi~-peNv~~ai~~~~p~gvDvsSgv 186 (210)
T PRK01222 154 AKPWILAGGLN-PDNVAEAIRQVRPYGVDVSSGV 186 (210)
T ss_pred CCCEEEECCCC-HHHHHHHHHhcCCCEEEecCce
Confidence 46999999997 889999997 487777776654
|
|
| >COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription] | Back alignment and domain information |
|---|
Probab=88.48 E-value=2.3 Score=37.06 Aligned_cols=87 Identities=17% Similarity=0.191 Sum_probs=58.0
Q ss_pred HHHHHHHhcCCcEEEEee----cCHHH-HHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCC
Q 019244 190 DVKWLQTITKLPILVKGV----LTAED-ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 264 (344)
Q Consensus 190 ~i~~i~~~~~~PvivK~v----~~~~~-a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr 264 (344)
.+..-++ .+++.+-..- .+.+. ...+.+.++|+|-+= . +- ....+.++.+.. ++|||+.|=|+
T Consensus 87 ~i~~Akk-~~~~aIqR~FilDS~Al~~~~~~i~~~~pD~iEvL--P-----Gv--~Pkvi~~i~~~t--~~piIAGGLi~ 154 (181)
T COG1954 87 VIKKAKK-LGILAIQRLFILDSIALEKGIKQIEKSEPDFIEVL--P-----GV--MPKVIKEITEKT--HIPIIAGGLIE 154 (181)
T ss_pred HHHHHHH-cCCceeeeeeeecHHHHHHHHHHHHHcCCCEEEEc--C-----cc--cHHHHHHHHHhc--CCCEEeccccc
Confidence 3444444 3666655542 22333 345667999999882 1 11 224566666655 79999999999
Q ss_pred CHHHHHHHHHcCCCEEEEchHHHH
Q 019244 265 RGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 265 ~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
+-+|+-.||..||-+|--..--+|
T Consensus 155 t~Eev~~Al~aGA~avSTs~~~lW 178 (181)
T COG1954 155 TEEEVREALKAGAVAVSTSNTKLW 178 (181)
T ss_pred cHHHHHHHHHhCcEEEeecchhhc
Confidence 999999999999998875544444
|
|
| >TIGR02708 L_lactate_ox L-lactate oxidase | Back alignment and domain information |
|---|
Probab=88.27 E-value=5.8 Score=38.98 Aligned_cols=91 Identities=22% Similarity=0.333 Sum_probs=61.9
Q ss_pred HHHHHHhc-CCcEEEEee------cCHHHHHHHHHcCCcEEEEcc----CCCCC--------------------------
Q 019244 191 VKWLQTIT-KLPILVKGV------LTAEDARIAVQAGAAGIIVSN----HGARQ-------------------------- 233 (344)
Q Consensus 191 i~~i~~~~-~~PvivK~v------~~~~~a~~~~~~G~d~I~v~~----~gG~~-------------------------- 233 (344)
+++|.+.. +-|.+.-.- .+.+..+++.++|+++|++.- .|-|.
T Consensus 123 lEev~~~~~~~~~wfQlY~~~dr~~~~~li~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~ 202 (367)
T TIGR02708 123 LPEISEALNGTPHWFQFYMSKDDGINRDIMDRVKADGAKAIVLTADATVGGNREVDVRNGFVFPVGMPIVQEYLPTGAGK 202 (367)
T ss_pred HHHHHhhcCCCceEEEEeccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCcchhhhhcCCCCCCccchhhhhcccCCcc
Confidence 44444442 457766553 345668899999999998852 11110
Q ss_pred -CC------CchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEch
Q 019244 234 -LD------YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 284 (344)
Q Consensus 234 -~~------~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~ 284 (344)
.. ....+++.|.++++.. ++||++= ||.+.+|+.++..+|+++|.++.
T Consensus 203 ~~~~~~~~~~~~~~w~~i~~l~~~~--~~PvivK-Gv~~~eda~~a~~~Gvd~I~VS~ 257 (367)
T TIGR02708 203 SMDNVYKSAKQKLSPRDIEEIAGYS--GLPVYVK-GPQCPEDADRALKAGASGIWVTN 257 (367)
T ss_pred chhhhccccCCCCCHHHHHHHHHhc--CCCEEEe-CCCCHHHHHHHHHcCcCEEEECC
Confidence 00 0113456788887766 6899976 69999999999999999998774
|
Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence. |
| >TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain | Back alignment and domain information |
|---|
Probab=88.20 E-value=6.7 Score=32.67 Aligned_cols=84 Identities=24% Similarity=0.220 Sum_probs=52.8
Q ss_pred HHHHHHHhcCCcEEEEee-cCHHH-HHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHc----cCCCcEEEecCC
Q 019244 190 DVKWLQTITKLPILVKGV-LTAED-ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT----QGRIPVFLDGGV 263 (344)
Q Consensus 190 ~i~~i~~~~~~PvivK~v-~~~~~-a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~----~~~~~via~GGI 263 (344)
.+..+-+..+.-|+--++ .++++ ++.+.+.++|.|.+|+.-+ .+.+.++++.+.+ ..+++|++ ||.
T Consensus 21 iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~e~~adii~iSsl~~-------~~~~~~~~~~~~L~~~g~~~i~viv-GG~ 92 (132)
T TIGR00640 21 VIATAYADLGFDVDVGPLFQTPEEIARQAVEADVHVVGVSSLAG-------GHLTLVPALRKELDKLGRPDILVVV-GGV 92 (132)
T ss_pred HHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEcCchh-------hhHHHHHHHHHHHHhcCCCCCEEEE-eCC
Confidence 344444445666665554 45655 6888999999999987432 1233333333332 12466666 666
Q ss_pred CCHHHHHHHHHcCCCEEE
Q 019244 264 RRGTDVFKALALGASGIF 281 (344)
Q Consensus 264 r~g~dv~kalalGAd~V~ 281 (344)
....|.....++|.+.+.
T Consensus 93 ~~~~~~~~l~~~Gvd~~~ 110 (132)
T TIGR00640 93 IPPQDFDELKEMGVAEIF 110 (132)
T ss_pred CChHhHHHHHHCCCCEEE
Confidence 667888899999988764
|
Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2. |
| >PRK10550 tRNA-dihydrouridine synthase C; Provisional | Back alignment and domain information |
|---|
Probab=88.06 E-value=7 Score=37.49 Aligned_cols=42 Identities=12% Similarity=0.489 Sum_probs=35.5
Q ss_pred CcHHHHHHHHHhcCCcEEEEe-ecCHHHHHHHH-HcCCcEEEEc
Q 019244 186 LSWKDVKWLQTITKLPILVKG-VLTAEDARIAV-QAGAAGIIVS 227 (344)
Q Consensus 186 ~~~~~i~~i~~~~~~PvivK~-v~~~~~a~~~~-~~G~d~I~v~ 227 (344)
..|+.++++++..++||+.=+ +.|+++++.++ ..|+|+|-++
T Consensus 181 ~~~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~~g~DgVmiG 224 (312)
T PRK10550 181 INWQAIGEIRQRLTIPVIANGEIWDWQSAQQCMAITGCDAVMIG 224 (312)
T ss_pred ccHHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhccCCCEEEEc
Confidence 378999999999999987755 57999999877 5889999883
|
|
| >PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=88.05 E-value=4.7 Score=39.37 Aligned_cols=129 Identities=19% Similarity=0.314 Sum_probs=76.4
Q ss_pred cHHHHHHHHHhcCCcEEEEeec--CHHH----HHHHHHcCCcEEEEccCCCCCCCCc----hhhHHHHHHHHHHccCCCc
Q 019244 187 SWKDVKWLQTITKLPILVKGVL--TAED----ARIAVQAGAAGIIVSNHGARQLDYV----PATIMALEEVVKATQGRIP 256 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v~--~~~~----a~~~~~~G~d~I~v~~~gG~~~~~g----~~~~~~l~~i~~~~~~~~~ 256 (344)
+++.++++.+ +++||++|--+ +.++ ++.+.+.|-.-|.+.-.|=|.+..+ ...+.+++.+++.. .+|
T Consensus 197 n~~LL~~va~-t~kPVllk~G~~~t~ee~~~A~e~i~~~Gn~~viL~erG~rtf~s~y~~~~~dl~ai~~lk~~~--~lP 273 (352)
T PRK13396 197 NFSLLKKVGA-QDKPVLLKRGMAATIDEWLMAAEYILAAGNPNVILCERGIRTFDRQYTRNTLDLSVIPVLRSLT--HLP 273 (352)
T ss_pred CHHHHHHHHc-cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEecCCccCcCCCCCCCcCHHHHHHHHHhh--CCC
Confidence 4566777765 58999999863 5665 4556677887777764443333212 23456777776544 689
Q ss_pred EEEec----CCCC--HHHHHHHHHcCCCEEEEchHHHHHh-hhcChHH-HHHHHHHHHHHHHHHHHHhCC
Q 019244 257 VFLDG----GVRR--GTDVFKALALGASGIFIGRPVVYSL-AAEGEKG-VRRVLEMLREEFELAMALSGC 318 (344)
Q Consensus 257 via~G----GIr~--g~dv~kalalGAd~V~ig~~~l~~~-~~~G~~~-v~~~l~~l~~el~~~m~~~G~ 318 (344)
||+|- |.+. ..-...|+++|||.+++-..+--.- .++|... --+-++.|.++++..-..+|.
T Consensus 274 Vi~DpsH~~G~sd~~~~~a~AAva~GAdGliIE~H~~pd~AlsD~~qsl~p~~~~~l~~~i~~i~~~~g~ 343 (352)
T PRK13396 274 IMIDPSHGTGKSEYVPSMAMAAIAAGTDSLMIEVHPNPAKALSDGPQSLTPDRFDRLMQELAVIGKTVGR 343 (352)
T ss_pred EEECCcccCCcHHHHHHHHHHHHhhCCCeEEEEecCCcccCCChhhhcCCHHHHHHHHHHHHHHHHHhCC
Confidence 99873 3332 2334467889999999887552210 1122211 112345666666666665554
|
|
| >cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides | Back alignment and domain information |
|---|
Probab=87.98 E-value=24 Score=33.53 Aligned_cols=89 Identities=16% Similarity=0.123 Sum_probs=61.7
Q ss_pred cHHHHHHHHHhcC-CcEEEEee--cCHHHH----HHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEE
Q 019244 187 SWKDVKWLQTITK-LPILVKGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 259 (344)
Q Consensus 187 ~~~~i~~i~~~~~-~PvivK~v--~~~~~a----~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via 259 (344)
..+.++.+|+.++ +++.++.- .+.++| +.+.+.++++|-= ...+..++.+.++++.. ++||++
T Consensus 164 d~~~v~~lr~~~g~~~l~vD~n~~~~~~~A~~~~~~l~~~~l~~iEe--------P~~~~d~~~~~~L~~~~--~ipIa~ 233 (316)
T cd03319 164 DIERIRAIREAAPDARLRVDANQGWTPEEAVELLRELAELGVELIEQ--------PVPAGDDDGLAYLRDKS--PLPIMA 233 (316)
T ss_pred HHHHHHHHHHhCCCCeEEEeCCCCcCHHHHHHHHHHHHhcCCCEEEC--------CCCCCCHHHHHHHHhcC--CCCEEE
Confidence 3456888887764 66777653 345554 4556778877731 01123566777777755 799999
Q ss_pred ecCCCCHHHHHHHHHc-CCCEEEEchH
Q 019244 260 DGGVRRGTDVFKALAL-GASGIFIGRP 285 (344)
Q Consensus 260 ~GGIr~g~dv~kalal-GAd~V~ig~~ 285 (344)
++.+.+..|+.+++.. ++|.|++--.
T Consensus 234 ~E~~~~~~~~~~~~~~~~~d~v~~~~~ 260 (316)
T cd03319 234 DESCFSAADAARLAGGGAYDGINIKLM 260 (316)
T ss_pred eCCCCCHHHHHHHHhcCCCCEEEEecc
Confidence 9999999999999985 4788877643
|
The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >PRK08883 ribulose-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=87.86 E-value=3 Score=37.93 Aligned_cols=115 Identities=16% Similarity=0.220 Sum_probs=63.8
Q ss_pred HHHHHHHcCCcc--c-cCCHHHHHHHHHHHHHcCCcE-EEeccCCccccccHHHHHhhcCCCCccccccccccccccccc
Q 019244 93 TARAASAAGTIM--V-YKDRNVVAQLVRRAERAGFKA-IALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDE 168 (344)
Q Consensus 93 lA~aA~~~g~~~--~-~~d~~~~~~~i~~a~~ag~~~-l~~tvd~~~~g~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 168 (344)
..+...++|.-+ + .+......+.++..++.|.++ +.+++.+|.-.... . . ..++.+.. +..
T Consensus 73 ~i~~~~~~gad~i~~H~Ea~~~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~~--~---l--------~~~D~vlv--MtV 137 (220)
T PRK08883 73 IIPDFAKAGASMITFHVEASEHVDRTLQLIKEHGCQAGVVLNPATPLHHLEY--I---M--------DKVDLILL--MSV 137 (220)
T ss_pred HHHHHHHhCCCEEEEcccCcccHHHHHHHHHHcCCcEEEEeCCCCCHHHHHH--H---H--------HhCCeEEE--EEe
Confidence 444455556544 2 222334556778888888886 77788877532111 0 0 01111000 000
Q ss_pred ccchhhHHHHhhcCCCCCcHHHHHHHHHhc-----CCcEEEEeecCHHHHHHHHHcCCcEEEEcc
Q 019244 169 ANDSGLAAYVAGQIDRSLSWKDVKWLQTIT-----KLPILVKGVLTAEDARIAVQAGAAGIIVSN 228 (344)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~-----~~PvivK~v~~~~~a~~~~~~G~d~I~v~~ 228 (344)
...-+.|.+ -....+.++++++.. ++|+.+=|..+.+.+..+.++|||.++++.
T Consensus 138 ~PGfgGq~f------i~~~lekI~~l~~~~~~~~~~~~I~vdGGI~~eni~~l~~aGAd~vVvGS 196 (220)
T PRK08883 138 NPGFGGQSF------IPHTLDKLRAVRKMIDESGRDIRLEIDGGVKVDNIREIAEAGADMFVAGS 196 (220)
T ss_pred cCCCCCcee------cHhHHHHHHHHHHHHHhcCCCeeEEEECCCCHHHHHHHHHcCCCEEEEeH
Confidence 000011111 112456677777665 388888777889999999999999998853
|
|
| >TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase | Back alignment and domain information |
|---|
Probab=87.64 E-value=5.7 Score=36.95 Aligned_cols=93 Identities=23% Similarity=0.310 Sum_probs=62.6
Q ss_pred cHHHHHHHHHhcCCcEEEEee--cCHHH----HHHHHHcCCcEEEEccCCCCCCCCc--hhhHHHHHHHHHHccCCCcEE
Q 019244 187 SWKDVKWLQTITKLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYV--PATIMALEEVVKATQGRIPVF 258 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v--~~~~~----a~~~~~~G~d~I~v~~~gG~~~~~g--~~~~~~l~~i~~~~~~~~~vi 258 (344)
+++.++++.+ ++.||.+|-- .++++ ++.+...|-+-|++.-.|-+ +... ...+..++.+++ . ..|||
T Consensus 105 n~~LL~a~g~-t~kpV~lKrG~~~t~~e~l~aaeyi~~~Gn~~viLcERG~t-f~y~r~~~D~~~ip~~k~-~--~~PVi 179 (258)
T TIGR01362 105 QTDLLVAAAK-TGRIVNVKKGQFLSPWDMKNVVEKVLSTGNKNILLCERGTS-FGYNNLVVDMRSLPIMRE-L--GCPVI 179 (258)
T ss_pred hHHHHHHHhc-cCCeEEecCCCcCCHHHHHHHHHHHHHcCCCcEEEEeCCCC-cCCCCcccchhhhHHHHh-c--CCCEE
Confidence 4566777665 5899999986 67776 67788999999988765532 2111 124455665544 3 58999
Q ss_pred Ee---------------cCCCCHHHH--HHHHHcCCCEEEEch
Q 019244 259 LD---------------GGVRRGTDV--FKALALGASGIFIGR 284 (344)
Q Consensus 259 a~---------------GGIr~g~dv--~kalalGAd~V~ig~ 284 (344)
.| ||.|.---. ..|+++|||.+++-.
T Consensus 180 ~DpSHsvq~pg~~g~~s~G~r~~v~~la~AAvA~GaDGl~iEv 222 (258)
T TIGR01362 180 FDATHSVQQPGGLGGASGGLREFVPTLARAAVAVGIDGLFMET 222 (258)
T ss_pred EeCCccccCCCCCCCCCCCcHHHHHHHHHHHHHhCCCEEEEEe
Confidence 85 565543322 247889999999876
|
In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide. |
| >cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV | Back alignment and domain information |
|---|
Probab=87.58 E-value=8 Score=38.00 Aligned_cols=112 Identities=19% Similarity=0.154 Sum_probs=63.9
Q ss_pred HHhhcCCCCCcHHHHHHHHHhcCCcEEEEee-----cCH----HHHHHHHHcCCcEEEEccCCCCCCCCc-hhhHHHHHH
Q 019244 177 YVAGQIDRSLSWKDVKWLQTITKLPILVKGV-----LTA----EDARIAVQAGAAGIIVSNHGARQLDYV-PATIMALEE 246 (344)
Q Consensus 177 ~~~~~~~~~~~~~~i~~i~~~~~~PvivK~v-----~~~----~~a~~~~~~G~d~I~v~~~gG~~~~~g-~~~~~~l~~ 246 (344)
+.....-+.|..+-++++....+-|++.-.. +++ +.+..+.+.|+|+|+..+.-|-+.... ..-...+.+
T Consensus 107 ~~~~f~GP~fGi~g~R~~~gv~~rPli~Ti~kp~~gld~~~la~~~~~l~~gGvD~Ikdde~~ge~~~~~~eER~~~v~~ 186 (367)
T cd08205 107 LLAAFPGPRFGIEGLRRLLGVHDRPLLGTIIKPSIGLSPEELAELAYELALGGIDLIKDDELLADQPYAPFEERVRACME 186 (367)
T ss_pred HHhhCCCCCCCchhHHHHhCCCCCCeeeeeeCCCCCCCHHHHHHHHHHHHhcCCCeeeccccccCcccCCHHHHHHHHHH
Confidence 3333445677788888888877778765322 444 336778899999998876544321111 112223333
Q ss_pred HHHHcc---CCCcEEEecCCCCHHHHH----HHHHcCCCEEEEchHHHH
Q 019244 247 VVKATQ---GRIPVFLDGGVRRGTDVF----KALALGASGIFIGRPVVY 288 (344)
Q Consensus 247 i~~~~~---~~~~via~GGIr~g~dv~----kalalGAd~V~ig~~~l~ 288 (344)
+.+... ++.++++.+.=.+..++. .+..+|||+||+.-+++.
T Consensus 187 av~~a~~~TG~~~~y~~nit~~~~e~i~~a~~a~~~Gad~vmv~~~~~g 235 (367)
T cd08205 187 AVRRANEETGRKTLYAPNITGDPDELRRRADRAVEAGANALLINPNLVG 235 (367)
T ss_pred HHHHHHHhhCCcceEEEEcCCCHHHHHHHHHHHHHcCCCEEEEeccccc
Confidence 333332 344444433223335554 345689999999988654
|
Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl |
| >cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily | Back alignment and domain information |
|---|
Probab=87.58 E-value=9.4 Score=36.93 Aligned_cols=87 Identities=13% Similarity=0.088 Sum_probs=59.0
Q ss_pred cHHHHHHHHHhc--CCcEEEEee--cCHHHHHH----HHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEE
Q 019244 187 SWKDVKWLQTIT--KLPILVKGV--LTAEDARI----AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 258 (344)
Q Consensus 187 ~~~~i~~i~~~~--~~PvivK~v--~~~~~a~~----~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~vi 258 (344)
+.+.++.+|+.+ +.++.+..- .+.+++.. +.+.++++|--- ..+..++.+.++++.. ++||+
T Consensus 175 d~~~v~~ir~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~iEqP--------~~~~~~~~~~~l~~~~--~ipi~ 244 (357)
T cd03316 175 DLARVRAVREAVGPDVDLMVDANGRWDLAEAIRLARALEEYDLFWFEEP--------VPPDDLEGLARLRQAT--SVPIA 244 (357)
T ss_pred HHHHHHHHHHhhCCCCEEEEECCCCCCHHHHHHHHHHhCccCCCeEcCC--------CCccCHHHHHHHHHhC--CCCEE
Confidence 445688888876 467777653 46666543 344566555310 1122456677777665 79999
Q ss_pred EecCCCCHHHHHHHHHcC-CCEEEEc
Q 019244 259 LDGGVRRGTDVFKALALG-ASGIFIG 283 (344)
Q Consensus 259 a~GGIr~g~dv~kalalG-Ad~V~ig 283 (344)
++..+.+..|+.+++..| +|.|.+-
T Consensus 245 ~dE~~~~~~~~~~~i~~~~~d~v~~k 270 (357)
T cd03316 245 AGENLYTRWEFRDLLEAGAVDIIQPD 270 (357)
T ss_pred eccccccHHHHHHHHHhCCCCEEecC
Confidence 999999999999999876 7888664
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD). |
| >PRK05835 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=87.56 E-value=7.4 Score=37.27 Aligned_cols=46 Identities=13% Similarity=0.356 Sum_probs=37.3
Q ss_pred CCCCcHHHHHHHHHhcCCcEEEEeec--CHH---------------------HHHHHHHcCCcEEEEcc
Q 019244 183 DRSLSWKDVKWLQTITKLPILVKGVL--TAE---------------------DARIAVQAGAAGIIVSN 228 (344)
Q Consensus 183 ~~~~~~~~i~~i~~~~~~PvivK~v~--~~~---------------------~a~~~~~~G~d~I~v~~ 228 (344)
.+.++|+.+++|++.+++|+++-+.. +.+ +.+++.+.|+.-|-+.+
T Consensus 188 ~p~L~f~~L~~I~~~~~iPLVLHGgSGip~e~~~~~~~~g~~~~~~~g~~~e~~~kai~~GI~KiNi~T 256 (307)
T PRK05835 188 EPKLDFERLQEVKRLTNIPLVLHGASAIPDDVRKSYLDAGGDLKGSKGVPFEFLQESVKGGINKVNTDT 256 (307)
T ss_pred CCccCHHHHHHHHHHhCCCEEEeCCCCCchHHhhhhhhhccccccccCCCHHHHHHHHHcCceEEEeCh
Confidence 35678999999999999999998863 333 78899999999887753
|
|
| >PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=87.39 E-value=6.2 Score=36.77 Aligned_cols=72 Identities=21% Similarity=0.250 Sum_probs=54.7
Q ss_pred HHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHH
Q 019244 210 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 287 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l 287 (344)
.+.|+...++||++|-|-.... +-...++.|..+++.+ ++||+.--=|....++..+..+|||+|.+.-..+
T Consensus 73 ~~~A~~~~~~GA~aisvlte~~----~f~g~~~~l~~v~~~v--~iPvl~kdfi~~~~qi~~a~~~GAD~VlLi~~~l 144 (260)
T PRK00278 73 VEIAKAYEAGGAACLSVLTDER----FFQGSLEYLRAARAAV--SLPVLRKDFIIDPYQIYEARAAGADAILLIVAAL 144 (260)
T ss_pred HHHHHHHHhCCCeEEEEecccc----cCCCCHHHHHHHHHhc--CCCEEeeeecCCHHHHHHHHHcCCCEEEEEeccC
Confidence 4568889999999998854211 1112367777787776 7999987778889999999999999999876553
|
|
| >cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily | Back alignment and domain information |
|---|
Probab=87.39 E-value=19 Score=33.34 Aligned_cols=86 Identities=22% Similarity=0.230 Sum_probs=59.4
Q ss_pred HHHHHHHHHhc--CCcEEEEee--cCHHHH----HHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEE
Q 019244 188 WKDVKWLQTIT--KLPILVKGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 259 (344)
Q Consensus 188 ~~~i~~i~~~~--~~PvivK~v--~~~~~a----~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via 259 (344)
.+.++.+|+.+ +.++.+..- .+.+++ +.+.+.|+++|----. +..++.+.++++.. ++||.+
T Consensus 116 ~~~v~~vr~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iEeP~~--------~~d~~~~~~l~~~~--~ipia~ 185 (265)
T cd03315 116 VAVVAALREAVGDDAELRVDANRGWTPKQAIRALRALEDLGLDYVEQPLP--------ADDLEGRAALARAT--DTPIMA 185 (265)
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCCcCHHHHHHHHHHHHhcCCCEEECCCC--------cccHHHHHHHHhhC--CCCEEE
Confidence 45677888776 355655532 455554 4566778888754111 12356667777655 799999
Q ss_pred ecCCCCHHHHHHHHHcC-CCEEEEc
Q 019244 260 DGGVRRGTDVFKALALG-ASGIFIG 283 (344)
Q Consensus 260 ~GGIr~g~dv~kalalG-Ad~V~ig 283 (344)
++.+.+..|+.+++..+ +|.|++-
T Consensus 186 dE~~~~~~~~~~~i~~~~~d~v~~k 210 (265)
T cd03315 186 DESAFTPHDAFRELALGAADAVNIK 210 (265)
T ss_pred CCCCCCHHHHHHHHHhCCCCEEEEe
Confidence 99999999999999876 7888775
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions. |
| >cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain | Back alignment and domain information |
|---|
Probab=87.21 E-value=6.1 Score=38.62 Aligned_cols=90 Identities=22% Similarity=0.318 Sum_probs=61.1
Q ss_pred HHHHHHhc-CCcEEEEee------cCHHHHHHHHHcCCcEEEEcc----CCCCC------------------CC----C-
Q 019244 191 VKWLQTIT-KLPILVKGV------LTAEDARIAVQAGAAGIIVSN----HGARQ------------------LD----Y- 236 (344)
Q Consensus 191 i~~i~~~~-~~PvivK~v------~~~~~a~~~~~~G~d~I~v~~----~gG~~------------------~~----~- 236 (344)
++++.+.. +-|.+++.- .+.+..+++.++|+.+|+++- .|-|. .+ .
T Consensus 115 ~Eei~~~~~~~~~wfQlY~~~d~~~~~~ll~rA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~ 194 (351)
T cd04737 115 LEEIAKASNGGPKWFQLYMSKDDGFNRSLLDRAKAAGAKAIILTADATVGGNREADIRNKFQFPFGMPNLNHFSEGTGKG 194 (351)
T ss_pred HHHHHHhcCCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCcchHHHHhcCCCCcccchhhhhccccccC
Confidence 34444444 457888774 234567889999999998853 11110 00 0
Q ss_pred -----------chhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 019244 237 -----------VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 283 (344)
Q Consensus 237 -----------g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig 283 (344)
...+++.|.++++.. ++||++- ||.+.+|+.++..+|||++.+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~l~~lr~~~--~~PvivK-gv~~~~dA~~a~~~G~d~I~vs 249 (351)
T cd04737 195 KGISEIYAAAKQKLSPADIEFIAKIS--GLPVIVK-GIQSPEDADVAINAGADGIWVS 249 (351)
T ss_pred cchhhhhhhccCCCCHHHHHHHHHHh--CCcEEEe-cCCCHHHHHHHHHcCCCEEEEe
Confidence 012456677777665 6899987 5899999999999999999984
|
LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). |
| >TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase | Back alignment and domain information |
|---|
Probab=87.18 E-value=6 Score=37.68 Aligned_cols=67 Identities=16% Similarity=0.165 Sum_probs=45.8
Q ss_pred HHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcE---EEecCCCCHHHHHHHHHcCCCEEEEchHHHHH
Q 019244 213 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV---FLDGGVRRGTDVFKALALGASGIFIGRPVVYS 289 (344)
Q Consensus 213 a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~v---ia~GGIr~g~dv~kalalGAd~V~ig~~~l~~ 289 (344)
++...++|||.|.+- ++.+.+.+.++.+.+. .|+ +..||-.-...+...-.+|.+.|..+...+++
T Consensus 171 a~aY~eAGAD~ifi~---------~~~~~~ei~~~~~~~~--~P~~~nv~~~~~~p~~s~~eL~~lG~~~v~~~~~~~~a 239 (294)
T TIGR02319 171 SREYVAAGADCIFLE---------AMLDVEEMKRVRDEID--APLLANMVEGGKTPWLTTKELESIGYNLAIYPLSGWMA 239 (294)
T ss_pred HHHHHHhCCCEEEec---------CCCCHHHHHHHHHhcC--CCeeEEEEecCCCCCCCHHHHHHcCCcEEEEcHHHHHH
Confidence 566779999999883 2456677777777763 454 34444322234556677899999999888775
Q ss_pred h
Q 019244 290 L 290 (344)
Q Consensus 290 ~ 290 (344)
.
T Consensus 240 a 240 (294)
T TIGR02319 240 A 240 (294)
T ss_pred H
Confidence 3
|
This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization. |
| >COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.16 E-value=12 Score=35.33 Aligned_cols=160 Identities=17% Similarity=0.215 Sum_probs=0.0
Q ss_pred ccccceeecccccccccCC--hhhHHHHH-HHHHcCCcc-ccCCHHHHHHHHHHHHHcCCcEEEeccCCccccccHHHHH
Q 019244 69 KISMPIMIAPTAMQKMAHP--EGEYATAR-AASAAGTIM-VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIK 144 (344)
Q Consensus 69 ~l~~Pi~iapm~~~~~~~~--~~~~~lA~-aA~~~g~~~-~~~d~~~~~~~i~~a~~ag~~~l~~tvd~~~~g~r~~~~~ 144 (344)
+...|++|.-.-++.-... +.-..+.+ .|.++++|. ++.|.....+.+.++.++||+.+++.-..-.+...-+--+
T Consensus 40 e~~sPvIiq~S~g~~~y~gg~~~~~~~v~~~a~~~~vPV~lHlDHg~~~~~~~~ai~~GFsSvMiDgS~~~~eENi~~tk 119 (286)
T COG0191 40 EEKSPVIIQFSEGAAKYAGGADSLAHMVKALAEKYGVPVALHLDHGASFEDCKQAIRAGFSSVMIDGSHLPFEENIAITK 119 (286)
T ss_pred HhCCCEEEEecccHHHHhchHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHhcCCceEEecCCcCCHHHHHHHHH
Q ss_pred h------hcCCCCccccccccccccccccc------ccchhhHHHHhhc------------------CCCCCcHHHHHHH
Q 019244 145 N------RFTLPPFLTLKNFQGLDLGKMDE------ANDSGLAAYVAGQ------------------IDRSLSWKDVKWL 194 (344)
Q Consensus 145 ~------~~~~~~g~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~------------------~~~~~~~~~i~~i 194 (344)
. .++...-.-...++..+.+.... .......+++... +.+.++++.++++
T Consensus 120 evv~~ah~~gvsVEaElG~~GG~Edg~~~~~~~~~~tdp~ea~~fv~~tgiD~LA~aiGn~HG~Yk~~~p~L~~~~L~~i 199 (286)
T COG0191 120 EVVEFAHAYGVSVEAELGTLGGEEDGVVLYTDPADLTDPEEALEFVERTGIDALAAAIGNVHGVYKPGNPKLDFDRLKEI 199 (286)
T ss_pred HHHHHHHHcCCcEEEEeccccCccCCcccccchhhhCCHHHHHHHHhccCcceeeeeccccccCCCCCCCCCCHHHHHHH
Q ss_pred HHhcCCcEEEEee--cCHHHHHHHHHcCCcEEEEcc
Q 019244 195 QTITKLPILVKGV--LTAEDARIAVQAGAAGIIVSN 228 (344)
Q Consensus 195 ~~~~~~PvivK~v--~~~~~a~~~~~~G~d~I~v~~ 228 (344)
++.+++|+++-+. .+.++.+++++.|+.-|-+.+
T Consensus 200 ~~~~~~PlVlHGgSGip~~eI~~aI~~GV~KvNi~T 235 (286)
T COG0191 200 QEAVSLPLVLHGGSGIPDEEIREAIKLGVAKVNIDT 235 (286)
T ss_pred HHHhCCCEEEeCCCCCCHHHHHHHHHhCceEEeeCc
|
|
| >COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.11 E-value=2.2 Score=39.21 Aligned_cols=65 Identities=22% Similarity=0.360 Sum_probs=51.7
Q ss_pred HHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 216 AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 216 ~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
+...++|+|+++|+. .+.++..+.|..+.+.. ++|+++-+|+. .+.+.+.|.. ||.+.+|+.+=.
T Consensus 173 ver~~aDaVI~tG~~----TG~~~d~~el~~a~~~~--~~pvlvGSGv~-~eN~~~~l~~-adG~IvgT~lK~ 237 (263)
T COG0434 173 VERGLADAVIVTGSR----TGSPPDLEELKLAKEAV--DTPVLVGSGVN-PENIEELLKI-ADGVIVGTSLKK 237 (263)
T ss_pred HHccCCCEEEEeccc----CCCCCCHHHHHHHHhcc--CCCEEEecCCC-HHHHHHHHHH-cCceEEEEEEcc
Confidence 667789999998752 13467888888887776 59999999986 7778888877 999999997743
|
|
| >PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4 | Back alignment and domain information |
|---|
Probab=87.06 E-value=8 Score=36.05 Aligned_cols=71 Identities=25% Similarity=0.340 Sum_probs=50.3
Q ss_pred HHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHH
Q 019244 211 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 287 (344)
Q Consensus 211 ~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l 287 (344)
+.|+...++||++|-|-.-. .+-..+++.|..+++.+ ++|++.-==|-+..++.++.++|||+|.+=-.++
T Consensus 72 ~~a~~y~~~GA~aiSVlTe~----~~F~Gs~~dL~~v~~~~--~~PvL~KDFIid~~QI~eA~~~GADaVLLI~~~L 142 (254)
T PF00218_consen 72 EIAKAYEEAGAAAISVLTEP----KFFGGSLEDLRAVRKAV--DLPVLRKDFIIDPYQIYEARAAGADAVLLIAAIL 142 (254)
T ss_dssp HHHHHHHHTT-SEEEEE--S----CCCHHHHHHHHHHHHHS--SS-EEEES---SHHHHHHHHHTT-SEEEEEGGGS
T ss_pred HHHHHHHhcCCCEEEEECCC----CCCCCCHHHHHHHHHHh--CCCcccccCCCCHHHHHHHHHcCCCEeehhHHhC
Confidence 55788889999999885421 12234677888888877 7999998889999999999999999998766554
|
1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A .... |
| >PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated | Back alignment and domain information |
|---|
Probab=87.03 E-value=3.9 Score=40.76 Aligned_cols=43 Identities=26% Similarity=0.268 Sum_probs=36.8
Q ss_pred CcHHHHHHHHHhc---CCcEE-EEeecCHHHHHHHHHcCCcEEEEcc
Q 019244 186 LSWKDVKWLQTIT---KLPIL-VKGVLTAEDARIAVQAGAAGIIVSN 228 (344)
Q Consensus 186 ~~~~~i~~i~~~~---~~Pvi-vK~v~~~~~a~~~~~~G~d~I~v~~ 228 (344)
..|+.|.++++.+ ++||+ +.++.+.+|+...+.+|||+|.+..
T Consensus 237 ~~l~~v~~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqi~t 283 (420)
T PRK08318 237 IALNMVAEIARDPETRGLPISGIGGIETWRDAAEFILLGAGTVQVCT 283 (420)
T ss_pred HHHHHHHHHHhccccCCCCEEeecCcCCHHHHHHHHHhCCChheeee
Confidence 3688999999887 78987 5668999999999999999999864
|
|
| >COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=87.03 E-value=5.8 Score=38.26 Aligned_cols=43 Identities=26% Similarity=0.630 Sum_probs=36.7
Q ss_pred CCcHHHHHHHHHhcC-CcEEEEe-ecCHHHHHHHHH-cCCcEEEEc
Q 019244 185 SLSWKDVKWLQTITK-LPILVKG-VLTAEDARIAVQ-AGAAGIIVS 227 (344)
Q Consensus 185 ~~~~~~i~~i~~~~~-~PvivK~-v~~~~~a~~~~~-~G~d~I~v~ 227 (344)
+.+|+.|.++++..+ +||+.=+ |.++++++..++ .|+|+|.+.
T Consensus 183 ~ad~~~I~~vk~~~~~ipvi~NGdI~s~~~a~~~l~~tg~DgVMig 228 (323)
T COG0042 183 PADWDYIKELKEAVPSIPVIANGDIKSLEDAKEMLEYTGADGVMIG 228 (323)
T ss_pred ccCHHHHHHHHHhCCCCeEEeCCCcCCHHHHHHHHHhhCCCEEEEc
Confidence 368999999999998 9999866 579999988776 579999884
|
|
| >cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway | Back alignment and domain information |
|---|
Probab=87.01 E-value=4.1 Score=37.95 Aligned_cols=92 Identities=14% Similarity=0.138 Sum_probs=56.4
Q ss_pred HHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCC----CCCCchhhHHH-HHHHHHHcc-CCCc-EEEecC-
Q 019244 191 VKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----QLDYVPATIMA-LEEVVKATQ-GRIP-VFLDGG- 262 (344)
Q Consensus 191 i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~----~~~~g~~~~~~-l~~i~~~~~-~~~~-via~GG- 262 (344)
++++++. +-|+++=.+-+.-.|+.+.++|+|.|.++...+. ..|.+.-+++- +..++...+ .+.| |++|-+
T Consensus 4 lr~l~~~-~~~l~~~~ayD~~sA~l~e~aG~d~i~vGds~~~~~lG~pDt~~vtl~em~~~~~~V~r~~~~p~viaD~~f 82 (254)
T cd06557 4 LQKMKKA-GEKIVMLTAYDYPTAKLADEAGVDVILVGDSLGMVVLGYDSTLPVTLDEMIYHTRAVRRGAPRALVVADMPF 82 (254)
T ss_pred HHHHHhC-CCcEEEEeCCCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCeEEEeCCC
Confidence 3444332 5688877778888999999999999986422111 12344444432 222222222 2578 888765
Q ss_pred --CCC-HHH----HHHHHH-cCCCEEEEc
Q 019244 263 --VRR-GTD----VFKALA-LGASGIFIG 283 (344)
Q Consensus 263 --Ir~-g~d----v~kala-lGAd~V~ig 283 (344)
..+ .++ +.+.+. .||++|-+-
T Consensus 83 g~y~~~~~~av~~a~r~~~~aGa~aVkiE 111 (254)
T cd06557 83 GSYQTSPEQALRNAARLMKEAGADAVKLE 111 (254)
T ss_pred CcccCCHHHHHHHHHHHHHHhCCeEEEEc
Confidence 434 333 577788 999999993
|
Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis. |
| >cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea | Back alignment and domain information |
|---|
Probab=86.90 E-value=7 Score=36.72 Aligned_cols=90 Identities=12% Similarity=0.108 Sum_probs=52.6
Q ss_pred HHHHHHcCCcEEEEccCCCCCCCCch-hhHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHcCCCEEEEchHHH
Q 019244 213 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 287 (344)
Q Consensus 213 a~~~~~~G~d~I~v~~~gG~~~~~g~-~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~k----alalGAd~V~ig~~~l 287 (344)
++.+.+.|+|+|.+.|+-|-...-.. ...+.+..+++.. +++ +...|+ .+-.|+++ |-.+|||++++..|++
T Consensus 26 i~~l~~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~~~-~~v-i~gvg~-~~~~~ai~~a~~a~~~Gad~v~v~~P~y 102 (279)
T cd00953 26 CENLISKGIDYVFVAGTTGLGPSLSFQEKLELLKAYSDIT-DKV-IFQVGS-LNLEESIELARAAKSFGIYAIASLPPYY 102 (279)
T ss_pred HHHHHHcCCcEEEEcccCCCcccCCHHHHHHHHHHHHHHc-CCE-EEEeCc-CCHHHHHHHHHHHHHcCCCEEEEeCCcC
Confidence 45678899999999776443221111 1233445555554 332 333443 33444443 2338999999999987
Q ss_pred HHhhhcChHHHHHHHHHHHH
Q 019244 288 YSLAAEGEKGVRRVLEMLRE 307 (344)
Q Consensus 288 ~~~~~~G~~~v~~~l~~l~~ 307 (344)
+.. ..++++.+++..+.+
T Consensus 103 ~~~--~~~~~i~~yf~~v~~ 120 (279)
T cd00953 103 FPG--IPEEWLIKYFTDISS 120 (279)
T ss_pred CCC--CCHHHHHHHHHHHHh
Confidence 631 135677777777666
|
This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases. |
| >PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate | Back alignment and domain information |
|---|
Probab=86.83 E-value=15 Score=34.76 Aligned_cols=110 Identities=25% Similarity=0.318 Sum_probs=73.7
Q ss_pred cCHHHHHHH-HHcCCcEEEEcc---CCCCCCCCchh--hHHHHHHHHHHccCCCcEEEecCCCCHH-HHHHHHHcCCCEE
Q 019244 208 LTAEDARIA-VQAGAAGIIVSN---HGARQLDYVPA--TIMALEEVVKATQGRIPVFLDGGVRRGT-DVFKALALGASGI 280 (344)
Q Consensus 208 ~~~~~a~~~-~~~G~d~I~v~~---~gG~~~~~g~~--~~~~l~~i~~~~~~~~~via~GGIr~g~-dv~kalalGAd~V 280 (344)
.+|++|+.. .+.|+|.+-|+- ||..... ..| .++.|.+|.+.++ ++|+..=||=..+. ++.|++.+|..=|
T Consensus 155 TdP~~a~~Fv~~TgvD~LAvaiGt~HG~y~~~-~~p~Ld~~~L~~I~~~~~-~iPLVlHGgSG~~~e~~~~ai~~Gi~Ki 232 (287)
T PF01116_consen 155 TDPEEAKEFVEETGVDALAVAIGTAHGMYKGG-KKPKLDFDRLKEIREAVP-DIPLVLHGGSGLPDEQIRKAIKNGISKI 232 (287)
T ss_dssp SSHHHHHHHHHHHTTSEEEE-SSSBSSSBSSS-SSTC--HHHHHHHHHHHH-TSEEEESSCTTS-HHHHHHHHHTTEEEE
T ss_pred cCHHHHHHHHHHhCCCEEEEecCccccccCCC-CCcccCHHHHHHHHHhcC-CCCEEEECCCCCCHHHHHHHHHcCceEE
Confidence 467887665 589999999873 5533111 134 4678999988774 69999977665555 8889999999999
Q ss_pred EEchHHHHHhhh-------cC------hHHHHHHHHHHHHHHHHHHHHhCCC
Q 019244 281 FIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 319 (344)
Q Consensus 281 ~ig~~~l~~~~~-------~G------~~~v~~~l~~l~~el~~~m~~~G~~ 319 (344)
-++|-+.++... +. ..-.....+.+++.++..|..+|+.
T Consensus 233 Ni~T~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~gs~ 284 (287)
T PF01116_consen 233 NIGTELRRAFTDALREYLAENPDKYDPRKLMKAAKEAMKEVVKEKIRLFGSA 284 (287)
T ss_dssp EESHHHHHHHHHHHHHHHHHSTTEHSHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred EEehHHHHHHHHHHHHHHHhCcccCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999987654321 00 0123344456777778888888764
|
There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B .... |
| >TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family | Back alignment and domain information |
|---|
Probab=86.62 E-value=20 Score=33.98 Aligned_cols=107 Identities=17% Similarity=0.285 Sum_probs=72.3
Q ss_pred cCHHHHHHHH-HcCCcEEEEcc---CCCCCCCCchh--hHHHHHHHHHHccCCCcEEEecCCCC-HHHHHHHHHcCCCEE
Q 019244 208 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPA--TIMALEEVVKATQGRIPVFLDGGVRR-GTDVFKALALGASGI 280 (344)
Q Consensus 208 ~~~~~a~~~~-~~G~d~I~v~~---~gG~~~~~g~~--~~~~l~~i~~~~~~~~~via~GGIr~-g~dv~kalalGAd~V 280 (344)
.+|++|+... +-|+|.+-|+- ||-+ .+.| .++.|.+|++.+ ++|+..=||=.. -+++.|++.+|..=|
T Consensus 153 T~peea~~Fv~~TgvD~LAvaiGt~HG~y---k~~p~Ldf~~L~~I~~~~--~iPLVlHGgSG~~~e~~~~ai~~Gi~Ki 227 (282)
T TIGR01858 153 TDPQEAKEFVEATGVDSLAVAIGTAHGLY---KKTPKLDFDRLAEIREVV--DVPLVLHGASDVPDEDVRRTIELGICKV 227 (282)
T ss_pred CCHHHHHHHHHHHCcCEEecccCccccCc---CCCCccCHHHHHHHHHHh--CCCeEEecCCCCCHHHHHHHHHcCCeEE
Confidence 4678887655 69999999874 5533 2333 467899998887 689888665444 456778999999999
Q ss_pred EEchHHHHHhhh-------cC------hHHHHHHHHHHHHHHHHHHHHhCCC
Q 019244 281 FIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 319 (344)
Q Consensus 281 ~ig~~~l~~~~~-------~G------~~~v~~~l~~l~~el~~~m~~~G~~ 319 (344)
-+++-+..+... .. ..-.....+.+++.++..|..+|+.
T Consensus 228 Ni~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 279 (282)
T TIGR01858 228 NVATELKIAFSGAVKAYFAENPQANDPRYYMRPGKDAMKKVVRNKINVCGSA 279 (282)
T ss_pred EeCcHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999987654221 00 1123344456677777777777754
|
This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4. |
| >TIGR00693 thiE thiamine-phosphate pyrophosphorylase | Back alignment and domain information |
|---|
Probab=86.40 E-value=4 Score=35.87 Aligned_cols=79 Identities=18% Similarity=0.166 Sum_probs=52.7
Q ss_pred HHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHH
Q 019244 190 DVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDV 269 (344)
Q Consensus 190 ~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv 269 (344)
.+..+.+.++.|+++- ++.+.+.+.|+|++.+.... . .. ..+++... -..+....++|..++
T Consensus 48 ~l~~~~~~~~~~l~i~-----~~~~la~~~g~~GvHl~~~~-------~-~~---~~~r~~~~--~~~~ig~s~h~~~e~ 109 (196)
T TIGR00693 48 KLQELCRRYGVPFIVN-----DRVDLALALGADGVHLGQDD-------L-PA---SEARALLG--PDKIIGVSTHNLEEL 109 (196)
T ss_pred HHHHHHHHhCCeEEEE-----CHHHHHHHcCCCEEecCccc-------C-CH---HHHHHhcC--CCCEEEEeCCCHHHH
Confidence 4556666668888874 25677889999999874210 1 11 22232332 123555679999999
Q ss_pred HHHHHcCCCEEEEchHH
Q 019244 270 FKALALGASGIFIGRPV 286 (344)
Q Consensus 270 ~kalalGAd~V~ig~~~ 286 (344)
.++..+|||.+.+|.-|
T Consensus 110 ~~a~~~g~dyi~~~~v~ 126 (196)
T TIGR00693 110 AEAEAEGADYIGFGPIF 126 (196)
T ss_pred HHHhHcCCCEEEECCcc
Confidence 99999999999998543
|
This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI. |
| >TIGR03586 PseI pseudaminic acid synthase | Back alignment and domain information |
|---|
Probab=86.17 E-value=34 Score=33.12 Aligned_cols=208 Identities=18% Similarity=0.208 Sum_probs=0.0
Q ss_pred ceeecccccccccCChhhHHHHHHHHHcCCcc--------------------------------------ccCCHHHHHH
Q 019244 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIM--------------------------------------VYKDRNVVAQ 114 (344)
Q Consensus 73 Pi~iapm~~~~~~~~~~~~~lA~aA~~~g~~~--------------------------------------~~~d~~~~~~ 114 (344)
|++|+-+|......-+--..|.++|+++|.-. +....+...+
T Consensus 2 ~~iIAEiG~NH~G~~~~A~~lI~~A~~aGAdavKFQ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~e~~~~ 81 (327)
T TIGR03586 2 PFIIAELSANHNGSLERALAMIEAAKAAGADAIKLQTYTPDTITLDSDRPEFIIKGGLWDGRTLYDLYQEAHTPWEWHKE 81 (327)
T ss_pred CEEEEEECCCCCChHHHHHHHHHHHHHhCCCEEEeeeccHHHhhccccccccccccCCcCCccHHHHHHHhhCCHHHHHH
Q ss_pred HHHHHHHcCCcEEEeccCCccccccHHHHHhhcCCCCcccccccccccccccccccchhhHHHHhhcCCCCC-cHHHHHH
Q 019244 115 LVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL-SWKDVKW 193 (344)
Q Consensus 115 ~i~~a~~ag~~~l~~tvd~~~~g~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~ 193 (344)
+.+.+++.|...+ +..+.....+....++.+ +-.-+.++. ++..++.
T Consensus 82 L~~~~~~~Gi~~~-----stpfd~~svd~l~~~~v~---------------------------~~KI~S~~~~n~~LL~~ 129 (327)
T TIGR03586 82 LFERAKELGLTIF-----SSPFDETAVDFLESLDVP---------------------------AYKIASFEITDLPLIRY 129 (327)
T ss_pred HHHHHHHhCCcEE-----EccCCHHHHHHHHHcCCC---------------------------EEEECCccccCHHHHHH
Q ss_pred HHHhcCCcEEEEee-cCHHH----HHHHHHcCC-cEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHH
Q 019244 194 LQTITKLPILVKGV-LTAED----ARIAVQAGA-AGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 267 (344)
Q Consensus 194 i~~~~~~PvivK~v-~~~~~----a~~~~~~G~-d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~ 267 (344)
+.+. ++||++|.. .+.++ +..+.+.|. +.+.+...-.+........+..+..+++.. .+||..|.=-.--.
T Consensus 130 va~~-gkPvilstG~~t~~Ei~~Av~~i~~~g~~~i~LlhC~s~YP~~~~~~nL~~i~~lk~~f--~~pVG~SDHt~G~~ 206 (327)
T TIGR03586 130 VAKT-GKPIIMSTGIATLEEIQEAVEACREAGCKDLVLLKCTSSYPAPLEDANLRTIPDLAERF--NVPVGLSDHTLGIL 206 (327)
T ss_pred HHhc-CCcEEEECCCCCHHHHHHHHHHHHHCCCCcEEEEecCCCCCCCcccCCHHHHHHHHHHh--CCCEEeeCCCCchH
Q ss_pred HHHHHHHcCCCEEEEchHHHHHhhhcChHH----HHHHHHHHHHHHHHHHHHhC
Q 019244 268 DVFKALALGASGIFIGRPVVYSLAAEGEKG----VRRVLEMLREEFELAMALSG 317 (344)
Q Consensus 268 dv~kalalGAd~V~ig~~~l~~~~~~G~~~----v~~~l~~l~~el~~~m~~~G 317 (344)
-...|+++||+ +|=+.|-..-...|.+. --+-++.|.++++..-..+|
T Consensus 207 ~~~aAva~GA~--iIEkH~tld~~l~G~D~~~Sl~p~e~~~lv~~ir~~~~~lg 258 (327)
T TIGR03586 207 APVAAVALGAC--VIEKHFTLDRSDGGVDSAFSLEPDEFKALVKEVRNAWLALG 258 (327)
T ss_pred HHHHHHHcCCC--EEEeCCChhhcCCCCChhccCCHHHHHHHHHHHHHHHHHhC
|
|
| >PRK02227 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=85.94 E-value=8.2 Score=35.55 Aligned_cols=74 Identities=30% Similarity=0.298 Sum_probs=50.6
Q ss_pred cCHHHHHHHHHcCCcEEEEccCC-CCCCCCchhhHHHHHHHHHHccCCCcEEEe-cCCC-CHHHH----HHHHHcCCCEE
Q 019244 208 LTAEDARIAVQAGAAGIIVSNHG-ARQLDYVPATIMALEEVVKATQGRIPVFLD-GGVR-RGTDV----FKALALGASGI 280 (344)
Q Consensus 208 ~~~~~a~~~~~~G~d~I~v~~~g-G~~~~~g~~~~~~l~~i~~~~~~~~~via~-GGIr-~g~dv----~kalalGAd~V 280 (344)
.+.++|..+.+.|+|.|++=+-. |. -|--....+++|++.++++.||-+. |.+- .+..+ ..+-+.|+|.|
T Consensus 8 r~~eEA~~Al~~GaDiIDvK~P~~Ga---LGA~~p~vir~Iv~~~~~~~pvSAtiGD~p~~p~~~~~aa~~~a~~GvDyV 84 (238)
T PRK02227 8 RNLEEALEALAGGADIIDVKNPKEGS---LGANFPWVIREIVAAVPGRKPVSATIGDVPYKPGTISLAALGAAATGADYV 84 (238)
T ss_pred CCHHHHHHHHhcCCCEEEccCCCCCC---CCCCCHHHHHHHHHHhCCCCCceeeccCCCCCchHHHHHHHHHHhhCCCEE
Confidence 57899999999999999997631 11 1223456778888888777888884 4443 22222 23334699999
Q ss_pred EEch
Q 019244 281 FIGR 284 (344)
Q Consensus 281 ~ig~ 284 (344)
=+|-
T Consensus 85 KvGl 88 (238)
T PRK02227 85 KVGL 88 (238)
T ss_pred EEcC
Confidence 9984
|
|
| >TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family | Back alignment and domain information |
|---|
Probab=85.84 E-value=2.8 Score=39.09 Aligned_cols=73 Identities=21% Similarity=0.252 Sum_probs=44.9
Q ss_pred HHHHHHHHHcCCcEEEEccCCCCCC--CCchhhHHHHHHHHHHccC--CCcEEEecCCCCHH--HHHHHHHcCCCEEEEc
Q 019244 210 AEDARIAVQAGAAGIIVSNHGARQL--DYVPATIMALEEVVKATQG--RIPVFLDGGVRRGT--DVFKALALGASGIFIG 283 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~~gG~~~--~~g~~~~~~l~~i~~~~~~--~~~via~GGIr~g~--dv~kalalGAd~V~ig 283 (344)
.++++.+.+.|+|+|.|.|.+..-. +.++.+..++..+...++. .+|+ ..-=+++.. -+.-|.+.||++|-+-
T Consensus 31 ~~ea~~l~~~GvD~viveN~~d~P~~~~~~p~tva~m~~i~~~v~~~~~~p~-GvnvL~nd~~aal~iA~a~ga~FIRv~ 109 (257)
T TIGR00259 31 WKDAMALEEGGVDAVMFENFFDAPFLKEVDPETVAAMAVIAGQLKSDVSIPL-GINVLRNDAVAALAIAMAVGAKFIRVN 109 (257)
T ss_pred HHHHHHHHhCCCCEEEEecCCCCCCcCCCCHHHHHHHHHHHHHHHHhcCCCe-eeeeecCCCHHHHHHHHHhCCCEEEEc
Confidence 4789999999999999999876533 5566666665555433322 3342 111123222 2333456899998773
|
Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis. |
| >PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=85.62 E-value=25 Score=33.33 Aligned_cols=107 Identities=21% Similarity=0.280 Sum_probs=71.1
Q ss_pred cCHHHHHHHH-HcCCcEEEEcc---CCCCCCCCchh--hHHHHHHHHHHccCCCcEEEecCCCC-HHHHHHHHHcCCCEE
Q 019244 208 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPA--TIMALEEVVKATQGRIPVFLDGGVRR-GTDVFKALALGASGI 280 (344)
Q Consensus 208 ~~~~~a~~~~-~~G~d~I~v~~---~gG~~~~~g~~--~~~~l~~i~~~~~~~~~via~GGIr~-g~dv~kalalGAd~V 280 (344)
.+|++|+... +-|+|.+-|+. ||-+ .+.| .++.|.+|++.+ ++|+..=||=.. -+++.|++.+|..=|
T Consensus 155 T~peeA~~Fv~~TgvD~LAvaiGt~HG~y---~~~p~Ld~~~L~~I~~~~--~iPLVlHGgSG~~~e~~~kai~~Gi~Ki 229 (284)
T PRK12737 155 TNPDAAAEFVERTGIDSLAVAIGTAHGLY---KGEPKLDFERLAEIREKV--SIPLVLHGASGVPDEDVKKAISLGICKV 229 (284)
T ss_pred CCHHHHHHHHHHhCCCEEeeccCcccccc---CCCCcCCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHCCCeEE
Confidence 4688887655 69999999874 5543 2333 567799998877 689888665444 456778999999999
Q ss_pred EEchHHHHHhhh-------cC------hHHHHHHHHHHHHHHHHHHHHhCCC
Q 019244 281 FIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 319 (344)
Q Consensus 281 ~ig~~~l~~~~~-------~G------~~~v~~~l~~l~~el~~~m~~~G~~ 319 (344)
-+++-+..+... .. ..-.....+.+++.++..|..+|+.
T Consensus 230 Ni~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 281 (284)
T PRK12737 230 NVATELKIAFSDAVKKYFYENPKANDPRKYMTPGKAAMKEVVREKIKVCGSE 281 (284)
T ss_pred EeCcHHHHHHHHHHHHHHHhCcCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999977543210 00 0112333455666777777777754
|
|
| >PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=85.47 E-value=9.1 Score=35.88 Aligned_cols=92 Identities=15% Similarity=0.124 Sum_probs=57.6
Q ss_pred HHHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCC----CCCCchhhHHH-H---HHHHHHccCCC-cEE
Q 019244 188 WKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----QLDYVPATIMA-L---EEVVKATQGRI-PVF 258 (344)
Q Consensus 188 ~~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~----~~~~g~~~~~~-l---~~i~~~~~~~~-~vi 258 (344)
...++++++. +-|+++=.+-+.-.|+.+.++|+|.|-++...+. ..|.+.-+++- + +.+++.. +. +|+
T Consensus 4 ~~~lr~~~~~-g~~i~~~tayD~~sArl~e~aG~d~i~vGds~~~~~lG~~Dt~~vtl~em~~h~~~V~r~~--~~p~vv 80 (264)
T PRK00311 4 ISDLQKMKQE-GEKIVMLTAYDYPFAKLFDEAGVDVILVGDSLGMVVLGYDSTLPVTLDDMIYHTKAVARGA--PRALVV 80 (264)
T ss_pred HHHHHHHHhC-CCCEEEEeCCCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcC--CCCcEE
Confidence 3345554443 5688887778889999999999999987422110 12344444432 2 3333322 44 588
Q ss_pred EecCCC----CHHH----HHHHHH-cCCCEEEE
Q 019244 259 LDGGVR----RGTD----VFKALA-LGASGIFI 282 (344)
Q Consensus 259 a~GGIr----~g~d----v~kala-lGAd~V~i 282 (344)
+|-++. +..+ +.+.+. .||++|-+
T Consensus 81 aD~pfg~y~~~~~~av~~a~r~~~~aGa~aVki 113 (264)
T PRK00311 81 ADMPFGSYQASPEQALRNAGRLMKEAGAHAVKL 113 (264)
T ss_pred EeCCCCCccCCHHHHHHHHHHHHHHhCCeEEEE
Confidence 876644 3355 567777 89999999
|
|
| >COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=85.42 E-value=18 Score=32.78 Aligned_cols=91 Identities=29% Similarity=0.235 Sum_probs=62.8
Q ss_pred HHHHHHHHHhcC-CcEEE--Eeec-CHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEec-C
Q 019244 188 WKDVKWLQTITK-LPILV--KGVL-TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG-G 262 (344)
Q Consensus 188 ~~~i~~i~~~~~-~Pviv--K~v~-~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~G-G 262 (344)
.+.|+.+|+.++ .+|+. |..- ..-+++.+.++|+|+++|++.. -.+|+....+.++.. ...+..+= |
T Consensus 44 ~~aV~~lr~~~pd~~IvAD~Kt~D~G~~e~~ma~~aGAd~~tV~g~A------~~~TI~~~i~~A~~~--~~~v~iDl~~ 115 (217)
T COG0269 44 MRAVRALRELFPDKIIVADLKTADAGAIEARMAFEAGADWVTVLGAA------DDATIKKAIKVAKEY--GKEVQIDLIG 115 (217)
T ss_pred HHHHHHHHHHCCCCeEEeeeeecchhHHHHHHHHHcCCCEEEEEecC------CHHHHHHHHHHHHHc--CCeEEEEeec
Confidence 357999999885 44443 3322 2356899999999999998642 135555444444433 34455543 7
Q ss_pred CCCHHHHHHHHH-cCCCEEEEchHH
Q 019244 263 VRRGTDVFKALA-LGASGIFIGRPV 286 (344)
Q Consensus 263 Ir~g~dv~kala-lGAd~V~ig~~~ 286 (344)
..++.+..+-+. +|.+.+.+=+..
T Consensus 116 ~~~~~~~~~~l~~~gvd~~~~H~g~ 140 (217)
T COG0269 116 VWDPEQRAKWLKELGVDQVILHRGR 140 (217)
T ss_pred CCCHHHHHHHHHHhCCCEEEEEecc
Confidence 999999999999 999999887654
|
|
| >COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=85.27 E-value=6.4 Score=33.36 Aligned_cols=86 Identities=23% Similarity=0.225 Sum_probs=57.1
Q ss_pred HHHHHHHHhcCCcEEEEee-cCHHH-HHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHc----cCCCcEEEecC
Q 019244 189 KDVKWLQTITKLPILVKGV-LTAED-ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT----QGRIPVFLDGG 262 (344)
Q Consensus 189 ~~i~~i~~~~~~PvivK~v-~~~~~-a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~----~~~~~via~GG 262 (344)
+.+..+-...+.-|+.-+. .|+++ +..|.+..++.|.+|+.-|. ..+.++++.+.+ .+++. +..||
T Consensus 30 kvia~~l~d~GfeVi~~g~~~tp~e~v~aA~~~dv~vIgvSsl~g~-------h~~l~~~lve~lre~G~~~i~-v~~GG 101 (143)
T COG2185 30 KVIARALADAGFEVINLGLFQTPEEAVRAAVEEDVDVIGVSSLDGG-------HLTLVPGLVEALREAGVEDIL-VVVGG 101 (143)
T ss_pred HHHHHHHHhCCceEEecCCcCCHHHHHHHHHhcCCCEEEEEeccch-------HHHHHHHHHHHHHHhCCcceE-EeecC
Confidence 4555555556777777665 56766 56677999999999975332 122333333332 23444 47799
Q ss_pred CCCHHHHHHHHHcCCCEEEE
Q 019244 263 VRRGTDVFKALALGASGIFI 282 (344)
Q Consensus 263 Ir~g~dv~kalalGAd~V~i 282 (344)
+-...|..+.-.+|.+.+.-
T Consensus 102 vip~~d~~~l~~~G~~~if~ 121 (143)
T COG2185 102 VIPPGDYQELKEMGVDRIFG 121 (143)
T ss_pred ccCchhHHHHHHhCcceeeC
Confidence 99999988888899988763
|
|
| >cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure | Back alignment and domain information |
|---|
Probab=85.15 E-value=8.2 Score=32.88 Aligned_cols=94 Identities=19% Similarity=0.156 Sum_probs=58.3
Q ss_pred HHHHHHHHhcCCcEEEEeec-CHHH-----HHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecC
Q 019244 189 KDVKWLQTITKLPILVKGVL-TAED-----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 262 (344)
Q Consensus 189 ~~i~~i~~~~~~PvivK~v~-~~~~-----a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GG 262 (344)
+.++.+++..++|+++.... +..+ ++.+.++|+|+|.+....+.. ..-..+.+.++++.+ .+++++..-.
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~d~v~l~~~~~~~---~~~~~~~~~~i~~~~-~~~~v~~~~~ 122 (200)
T cd04722 47 EVLKEVAAETDLPLGVQLAINDAAAAVDIAAAAARAAGADGVEIHGAVGYL---AREDLELIRELREAV-PDVKVVVKLS 122 (200)
T ss_pred cHHHHHHhhcCCcEEEEEccCCchhhhhHHHHHHHHcCCCEEEEeccCCcH---HHHHHHHHHHHHHhc-CCceEEEEEC
Confidence 35677777778999888752 2222 468999999999996532210 001334566666655 3577777654
Q ss_pred CCCHHHHHHHHHcCCCEEEEchHH
Q 019244 263 VRRGTDVFKALALGASGIFIGRPV 286 (344)
Q Consensus 263 Ir~g~dv~kalalGAd~V~ig~~~ 286 (344)
.....+...+...|++.+.+...+
T Consensus 123 ~~~~~~~~~~~~~g~d~i~~~~~~ 146 (200)
T cd04722 123 PTGELAAAAAEEAGVDEVGLGNGG 146 (200)
T ss_pred CCCccchhhHHHcCCCEEEEcCCc
Confidence 443333322467899999987654
|
Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN. |
| >PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=85.11 E-value=8 Score=36.12 Aligned_cols=93 Identities=26% Similarity=0.316 Sum_probs=62.2
Q ss_pred cHHHHHHHHHhcCCcEEEEee--cCHHH----HHHHHHcCCcEEEEccCCCCCCCCc--hhhHHHHHHHHHHccCCCcEE
Q 019244 187 SWKDVKWLQTITKLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYV--PATIMALEEVVKATQGRIPVF 258 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v--~~~~~----a~~~~~~G~d~I~v~~~gG~~~~~g--~~~~~~l~~i~~~~~~~~~vi 258 (344)
+++.++++.+ ++.||.+|-- .++++ ++.....|-.-|++.-.|-+ +... ...+..++.+.+ . .+|||
T Consensus 113 n~~LL~a~g~-t~kpV~lKrG~~~t~~e~~~aaeyi~~~Gn~~vilcERG~t-f~y~r~~~D~~~vp~~k~-~--~lPVi 187 (264)
T PRK05198 113 QTDLLVAAAK-TGKVVNIKKGQFLAPWDMKNVVDKVREAGNDKIILCERGTS-FGYNNLVVDMRGLPIMRE-T--GAPVI 187 (264)
T ss_pred hHHHHHHHhc-cCCeEEecCCCcCCHHHHHHHHHHHHHcCCCeEEEEeCCCC-cCCCCeeechhhhHHHhh-C--CCCEE
Confidence 4566777765 5899999976 67776 67788899999988765532 2111 124455665543 3 48999
Q ss_pred Ee---------------cCCCCHHH--HHHHHHcCCCEEEEch
Q 019244 259 LD---------------GGVRRGTD--VFKALALGASGIFIGR 284 (344)
Q Consensus 259 a~---------------GGIr~g~d--v~kalalGAd~V~ig~ 284 (344)
.| ||-|.--- +..|+++|||.+++-.
T Consensus 188 ~DpSHsvq~pg~~~~~s~G~r~~v~~la~AAvA~GadGl~iEv 230 (264)
T PRK05198 188 FDATHSVQLPGGQGGSSGGQREFVPVLARAAVAVGVAGLFIET 230 (264)
T ss_pred EeCCccccCCCCCCCCCCCcHHHHHHHHHHHHHcCCCEEEEEe
Confidence 86 55554322 2367889999999875
|
|
| >TIGR01501 MthylAspMutase methylaspartate mutase, S subunit | Back alignment and domain information |
|---|
Probab=85.04 E-value=20 Score=30.07 Aligned_cols=86 Identities=16% Similarity=0.210 Sum_probs=49.1
Q ss_pred HHHHHHHhcCCcEEEEee-cCHHH-HHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHc---c-CCCcEEEecCC
Q 019244 190 DVKWLQTITKLPILVKGV-LTAED-ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---Q-GRIPVFLDGGV 263 (344)
Q Consensus 190 ~i~~i~~~~~~PvivK~v-~~~~~-a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~---~-~~~~via~GGI 263 (344)
.+..+-+..+.-|+-=++ .++++ ++.+.+.++|.|-+|..-++ +...++++.+.+ + .+++++.-|++
T Consensus 20 iv~~~l~~~GfeVi~LG~~v~~e~~v~aa~~~~adiVglS~l~~~-------~~~~~~~~~~~l~~~gl~~~~vivGG~~ 92 (134)
T TIGR01501 20 ILDHAFTNAGFNVVNLGVLSPQEEFIKAAIETKADAILVSSLYGH-------GEIDCKGLRQKCDEAGLEGILLYVGGNL 92 (134)
T ss_pred HHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccccc-------CHHHHHHHHHHHHHCCCCCCEEEecCCc
Confidence 445554555666665444 45554 77888999999999875443 222233333222 1 24554444432
Q ss_pred -CCHHHH----HHHHHcCCCEEEE
Q 019244 264 -RRGTDV----FKALALGASGIFI 282 (344)
Q Consensus 264 -r~g~dv----~kalalGAd~V~i 282 (344)
-...|. .++.++|.+.|+-
T Consensus 93 vi~~~d~~~~~~~l~~~Gv~~vF~ 116 (134)
T TIGR01501 93 VVGKQDFPDVEKRFKEMGFDRVFA 116 (134)
T ss_pred CcChhhhHHHHHHHHHcCCCEEEC
Confidence 334453 3578899998863
|
This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation. |
| >TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family | Back alignment and domain information |
|---|
Probab=84.83 E-value=9.2 Score=36.60 Aligned_cols=41 Identities=20% Similarity=0.656 Sum_probs=35.3
Q ss_pred CcHHHHHHHHHhcCCcEEEEe-ecCHHHHHHHH-HcCCcEEEE
Q 019244 186 LSWKDVKWLQTITKLPILVKG-VLTAEDARIAV-QAGAAGIIV 226 (344)
Q Consensus 186 ~~~~~i~~i~~~~~~PvivK~-v~~~~~a~~~~-~~G~d~I~v 226 (344)
..|+.++.+++.+++||+.=+ +.+++++..+. ..|+|+|.+
T Consensus 179 ~~~~~i~~i~~~~~ipvi~nGgI~~~~da~~~l~~~gad~Vmi 221 (319)
T TIGR00737 179 ANWDIIARVKQAVRIPVIGNGDIFSPEDAKAMLETTGCDGVMI 221 (319)
T ss_pred hhHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHhhCCCEEEE
Confidence 368899999999999988744 58999999998 688999988
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage | Back alignment and domain information |
|---|
Probab=84.80 E-value=4.3 Score=37.47 Aligned_cols=82 Identities=28% Similarity=0.356 Sum_probs=55.3
Q ss_pred CCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCC----CCCCchhhHHH----HHHHHHHccCCCcEEEecCC--CCHHH
Q 019244 199 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----QLDYVPATIMA----LEEVVKATQGRIPVFLDGGV--RRGTD 268 (344)
Q Consensus 199 ~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~----~~~~g~~~~~~----l~~i~~~~~~~~~via~GGI--r~g~d 268 (344)
+-|+++-++-+.-.|+.+.++|++++.+++++.. ..|.+.-+++. +..|.... .+|+++|+-. .+..+
T Consensus 8 ~~~i~~~~~~D~~sA~~~e~~G~~ai~~s~~~~~~s~G~pD~~~~~~~e~~~~~~~I~~~~--~~Pv~~D~~~G~g~~~~ 85 (243)
T cd00377 8 GGPLVLPGAWDALSARLAERAGFKAIYTSGAGVAASLGLPDGGLLTLDEVLAAVRRIARAV--DLPVIADADTGYGNALN 85 (243)
T ss_pred CCcEEecCCCCHHHHHHHHHcCCCEEEeccHHHHHhcCCCCCCcCCHHHHHHHHHHHHhhc--cCCEEEEcCCCCCCHHH
Confidence 5688877778888999999999999999875432 12334334332 33333333 7999998755 33334
Q ss_pred H----HHHHHcCCCEEEE
Q 019244 269 V----FKALALGASGIFI 282 (344)
Q Consensus 269 v----~kalalGAd~V~i 282 (344)
+ .+.+..|+++|.+
T Consensus 86 ~~~~v~~~~~~G~~gv~i 103 (243)
T cd00377 86 VARTVRELEEAGAAGIHI 103 (243)
T ss_pred HHHHHHHHHHcCCEEEEE
Confidence 4 3455689999999
|
Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to |
| >COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=84.78 E-value=24 Score=36.33 Aligned_cols=36 Identities=25% Similarity=0.464 Sum_probs=30.0
Q ss_pred CCCcEEEecCCCCHHHHHHHHH------cC-----CCEEEEchHHHH
Q 019244 253 GRIPVFLDGGVRRGTDVFKALA------LG-----ASGIFIGRPVVY 288 (344)
Q Consensus 253 ~~~~via~GGIr~g~dv~kala------lG-----Ad~V~ig~~~l~ 288 (344)
+++-+++-|||.++.|.+.+|- .| .|.+.+|+..|-
T Consensus 212 ~NIvl~vGgGiGtp~~aa~YLTGeWSt~~g~P~MP~DGiLvGtaaMa 258 (717)
T COG4981 212 DNIVLCVGGGIGTPDDAAPYLTGEWSTAYGFPPMPFDGILVGTAAMA 258 (717)
T ss_pred CCEEEEecCCcCChhhcccccccchhhhcCCCCCCcceeEechhHHh
Confidence 4899999999999999987762 33 699999998875
|
|
| >cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=84.75 E-value=10 Score=36.02 Aligned_cols=43 Identities=26% Similarity=0.288 Sum_probs=36.8
Q ss_pred CcHHHHHHHHHhc--CCcEEE-EeecCHHHHHHHHHcCCcEEEEcc
Q 019244 186 LSWKDVKWLQTIT--KLPILV-KGVLTAEDARIAVQAGAAGIIVSN 228 (344)
Q Consensus 186 ~~~~~i~~i~~~~--~~Pviv-K~v~~~~~a~~~~~~G~d~I~v~~ 228 (344)
..|+.|.++++.+ ++||+. .++.+.+|+.+.+.+|||+|.+..
T Consensus 237 ~~l~~v~~~~~~~~~~ipIig~GGI~~~~da~~~l~aGA~~V~i~t 282 (299)
T cd02940 237 IALRAVSQIARAPEPGLPISGIGGIESWEDAAEFLLLGASVVQVCT 282 (299)
T ss_pred HHHHHHHHHHHhcCCCCcEEEECCCCCHHHHHHHHHcCCChheEce
Confidence 4689999999999 799865 446899999999999999998854
|
DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue. |
| >TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase | Back alignment and domain information |
|---|
Probab=84.70 E-value=5.2 Score=38.03 Aligned_cols=83 Identities=23% Similarity=0.212 Sum_probs=56.6
Q ss_pred CCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCC----CCCCchhhH----HHHHHHHHHccCCCcEEEec--CCCCHHH
Q 019244 199 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----QLDYVPATI----MALEEVVKATQGRIPVFLDG--GVRRGTD 268 (344)
Q Consensus 199 ~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~----~~~~g~~~~----~~l~~i~~~~~~~~~via~G--GIr~g~d 268 (344)
+-++++-++.+.-.|+.+.++|.++|.+|++|=. ..|.+.-++ +.+.+|.+.+ ++||++|. |..+..+
T Consensus 14 ~~~~~~pg~~D~lSAri~e~aGf~ai~~ss~~va~slG~pD~g~l~~~e~~~~~~~I~~~~--~lPv~aD~d~GyG~~~~ 91 (290)
T TIGR02321 14 GRLFTAMAAHNPLVAKLAEQAGFGGIWGSGFELSASYAVPDANILSMSTHLEMMRAIASTV--SIPLIADIDTGFGNAVN 91 (290)
T ss_pred CCCEEeccccCHHHHHHHHHcCCCEEEECHHHHHHHCCCCCcccCCHHHHHHHHHHHHhcc--CCCEEEECCCCCCCcHH
Confidence 4567777778888899999999999999875311 134443333 3344555554 79999964 6666556
Q ss_pred H---H-HHHHcCCCEEEEc
Q 019244 269 V---F-KALALGASGIFIG 283 (344)
Q Consensus 269 v---~-kalalGAd~V~ig 283 (344)
+ + ++...|+.++.|-
T Consensus 92 v~~tV~~~~~aGvagi~IE 110 (290)
T TIGR02321 92 VHYVVPQYEAAGASAIVME 110 (290)
T ss_pred HHHHHHHHHHcCCeEEEEe
Confidence 5 3 4556899888883
|
This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2. |
| >PRK07188 nicotinate phosphoribosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=84.50 E-value=9.1 Score=37.43 Aligned_cols=97 Identities=11% Similarity=0.070 Sum_probs=63.6
Q ss_pred HHHHHHHHhcC-CcEEEEeec----CHHHHHHHHHc-CCcE--EEEccCCCCCCCC--------------chhhHHHHHH
Q 019244 189 KDVKWLQTITK-LPILVKGVL----TAEDARIAVQA-GAAG--IIVSNHGARQLDY--------------VPATIMALEE 246 (344)
Q Consensus 189 ~~i~~i~~~~~-~PvivK~v~----~~~~a~~~~~~-G~d~--I~v~~~gG~~~~~--------------g~~~~~~l~~ 246 (344)
+.++..++.++ .|+++ ++. +.+++..+.++ |.|. |-++.+|. ++|. ..-+.+.+.+
T Consensus 191 ~A~~a~~~~~Pe~~~iv-lVD~~~d~~~~al~~a~~~g~~l~gVRlDs~gd-l~DK~~~~~~~~~~~~~~~G~~~~l~~~ 268 (352)
T PRK07188 191 EACKAYHKTFPEDELIA-LVDYNNDVITDSLKVAREFGDKLKGVRVDTSKN-MIDKYFIRHPEVLGTFDPRGVNPELIKA 268 (352)
T ss_pred HHHHHHHHHCCCCCeEE-EEecCcccHHHHHHHHHHhCCCccEEEeCCcch-HhhhhcccccccccccccccccHHHHHH
Confidence 45677777664 35543 343 67778777777 8777 87776433 1111 0023455666
Q ss_pred HHHHc---c-CCCcEEEecCCCCHHHHHHHHHcC--CCEEEEchHHHH
Q 019244 247 VVKAT---Q-GRIPVFLDGGVRRGTDVFKALALG--ASGIFIGRPVVY 288 (344)
Q Consensus 247 i~~~~---~-~~~~via~GGIr~g~dv~kalalG--Ad~V~ig~~~l~ 288 (344)
+++.+ + .++.|++||||. ...+....+.| +|..+||+.+..
T Consensus 269 vr~~Ld~~g~~~vkI~aSgGin-e~~I~~~~~~g~piD~~GVGt~l~~ 315 (352)
T PRK07188 269 LRKALDENGGKHVKIIVSSGFD-AKKIREFEAQNVPVDIYGVGSSLLK 315 (352)
T ss_pred HHHHHhhCCCCCcEEEEeCCCC-HHHHHHHHHcCCCccEEecCccccc
Confidence 66554 2 478899999995 77777777789 699999998764
|
|
| >cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=84.48 E-value=13 Score=35.92 Aligned_cols=95 Identities=18% Similarity=0.144 Sum_probs=58.4
Q ss_pred HHHHHHHHHhcC-CcEEEEee------cCHHHHHHHH-HcCCcEEEEccCCCCC--CCCchhhH----HHHHHHHHHccC
Q 019244 188 WKDVKWLQTITK-LPILVKGV------LTAEDARIAV-QAGAAGIIVSNHGARQ--LDYVPATI----MALEEVVKATQG 253 (344)
Q Consensus 188 ~~~i~~i~~~~~-~PvivK~v------~~~~~a~~~~-~~G~d~I~v~~~gG~~--~~~g~~~~----~~l~~i~~~~~~ 253 (344)
|+.++.+|+..+ .|+++-.- .+++++..+. ..++|++.+.-..... ...+.... +.|..+++.+
T Consensus 100 ~~~~~~vr~~~~~~p~~~Nl~~~~~~~~~~~~~~~~i~~~~adalel~l~~~q~~~~~~~~~df~~~~~~i~~l~~~~-- 177 (326)
T cd02811 100 AESFTVVREAPPNGPLIANLGAVQLNGYGVEEARRAVEMIEADALAIHLNPLQEAVQPEGDRDFRGWLERIEELVKAL-- 177 (326)
T ss_pred hhHHHHHHHhCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCcchHhhcCCCCCcCHHHHHHHHHHHHHhc--
Confidence 456777777775 88776442 1566655444 4789999884211100 11122222 4566666655
Q ss_pred CCcEEE--ecCCCCHHHHHHHHHcCCCEEEEch
Q 019244 254 RIPVFL--DGGVRRGTDVFKALALGASGIFIGR 284 (344)
Q Consensus 254 ~~~via--~GGIr~g~dv~kalalGAd~V~ig~ 284 (344)
++||++ .|--.+..++.++...|+|++-++.
T Consensus 178 ~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~vsG 210 (326)
T cd02811 178 SVPVIVKEVGFGISRETAKRLADAGVKAIDVAG 210 (326)
T ss_pred CCCEEEEecCCCCCHHHHHHHHHcCCCEEEECC
Confidence 789998 3433567777777779999999864
|
Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway. |
| >TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype | Back alignment and domain information |
|---|
Probab=84.43 E-value=25 Score=34.34 Aligned_cols=112 Identities=17% Similarity=0.235 Sum_probs=75.6
Q ss_pred cCHHHHHHHH-HcCCcEEEEcc---CCCCCCCCch----hhHHHHHHHHHHccCCCcEEEecCCCCH-------------
Q 019244 208 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVP----ATIMALEEVVKATQGRIPVFLDGGVRRG------------- 266 (344)
Q Consensus 208 ~~~~~a~~~~-~~G~d~I~v~~---~gG~~~~~g~----~~~~~l~~i~~~~~~~~~via~GGIr~g------------- 266 (344)
.+|++|+... +.|+|.+-++. ||-+.....| -.++.|.+|++.+ +++|+..=||=..+
T Consensus 171 T~PeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~Ld~~rL~eI~~~v-~~vPLVLHGgSG~p~~~~~~~~~~~~~ 249 (347)
T TIGR01521 171 TDPEEAADFVKKTKVDALAVAIGTSHGAYKFTRKPTGEVLAIQRIEEIHARL-PDTHLVMHGSSSVPQEWLDIINEYGGE 249 (347)
T ss_pred CCHHHHHHHHHHHCcCEEehhcccccCCcCCCCCCChhhcCHHHHHHHHccC-CCCCEEEeCCCCCchHhhHHHHhhccc
Confidence 4688887755 57999998874 5533210012 2456788888876 25999998876554
Q ss_pred ---------HHHHHHHHcCCCEEEEchHHHHHhhh-------cC------hHHHHHHHHHHHHHHHHHHHHhCCCC
Q 019244 267 ---------TDVFKALALGASGIFIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCRS 320 (344)
Q Consensus 267 ---------~dv~kalalGAd~V~ig~~~l~~~~~-------~G------~~~v~~~l~~l~~el~~~m~~~G~~~ 320 (344)
+++.|++.+|..=|-+++-+.++... .. ..-.....+.+++.....|..+|...
T Consensus 250 ~~~~~g~p~e~i~~ai~~GI~KVNi~Tdl~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~a~~~~v~~~i~~~gs~~ 325 (347)
T TIGR01521 250 IKETYGVPVEEIVEGIKYGVRKVNIDTDLRLASTAAFRRFAAQNPSEFDPRKFLKPTVEAMRDVCIARYEAFGTAG 325 (347)
T ss_pred ccccCCCCHHHHHHHHHCCCeeEEeChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 88999999999999999977554221 11 11233444567778888888888653
|
Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle. |
| >COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=84.17 E-value=5.5 Score=37.62 Aligned_cols=91 Identities=25% Similarity=0.337 Sum_probs=62.2
Q ss_pred HHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCC----CCCCchhhHH----HHHHHHHHccCCCcEEEec-
Q 019244 191 VKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----QLDYVPATIM----ALEEVVKATQGRIPVFLDG- 261 (344)
Q Consensus 191 i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~----~~~~g~~~~~----~l~~i~~~~~~~~~via~G- 261 (344)
++.+.+. +-|+.+-++.++-.|+.+.++|.+++.+|+.|=. -.|.+..|++ ..++|.+.+ ++||++|.
T Consensus 10 fR~l~~~-~~~~~~pg~~d~~sA~la~~aGF~al~~sg~~vA~slG~pD~~~~t~~e~~~~vrrI~~a~--~lPv~vD~d 86 (289)
T COG2513 10 FRALHAS-GDPLVLPGAWDAGSALLAERAGFKALYLSGAGVAASLGLPDLGITTLDEVLADARRITDAV--DLPVLVDID 86 (289)
T ss_pred HHHHHhC-CCCEEecCCcCHHHHHHHHHcCCeEEEeccHHHHHhcCCCccccccHHHHHHHHHHHHhhc--CCceEEecc
Confidence 3444442 5688888889999999999999999999975421 1345555543 234444444 89999964
Q ss_pred -CCCCHHHHH----HHHHcCCCEEEEch
Q 019244 262 -GVRRGTDVF----KALALGASGIFIGR 284 (344)
Q Consensus 262 -GIr~g~dv~----kalalGAd~V~ig~ 284 (344)
|..++..++ ++...|+.++.|--
T Consensus 87 tGfG~~~nvartV~~~~~aG~agi~iED 114 (289)
T COG2513 87 TGFGEALNVARTVRELEQAGAAGIHIED 114 (289)
T ss_pred CCCCcHHHHHHHHHHHHHcCcceeeeee
Confidence 777655555 45568998887753
|
|
| >COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=84.09 E-value=42 Score=32.42 Aligned_cols=61 Identities=11% Similarity=0.204 Sum_probs=45.6
Q ss_pred cCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHc----CCC
Q 019244 208 LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL----GAS 278 (344)
Q Consensus 208 ~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalal----GAd 278 (344)
.+...+..+...++.+..+... .......|.-+++. ..|+|.|.|+.+-+++-+++.. |..
T Consensus 111 fd~~svd~l~~~~~~ayKIaS~-------E~~~~plik~iA~~---~kPiIlSTGma~~~ei~~av~~~r~~g~~ 175 (347)
T COG2089 111 FDLTAVDLLESLNPPAYKIASG-------EINDLPLIKYIAKK---GKPIILSTGMATIEEIEEAVAILRENGNP 175 (347)
T ss_pred CCHHHHHHHHhcCCCeEEecCc-------cccChHHHHHHHhc---CCCEEEEcccccHHHHHHHHHHHHhcCCC
Confidence 5678899999999999999532 12234455555432 5699999999999999999873 765
|
|
| >PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=83.82 E-value=22 Score=34.67 Aligned_cols=112 Identities=14% Similarity=0.232 Sum_probs=75.3
Q ss_pred cCHHHHHHHH-HcCCcEEEEcc---CCCCCCCCch----hhHHHHHHHHHHccCCCcEEEecCCC---------------
Q 019244 208 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVP----ATIMALEEVVKATQGRIPVFLDGGVR--------------- 264 (344)
Q Consensus 208 ~~~~~a~~~~-~~G~d~I~v~~---~gG~~~~~g~----~~~~~l~~i~~~~~~~~~via~GGIr--------------- 264 (344)
.+|++|+... +.|+|.+-|+. ||-+.....| -.++.|.+|++.++ ++|+..=||=.
T Consensus 173 T~PeeA~~Fv~~TgvD~LAvaiGT~HG~Yk~~~~p~~~~LdfdrL~eI~~~v~-~vPLVLHGgSG~~~~~~~~~~~~g~~ 251 (347)
T PRK09196 173 TDPEEAADFVKKTQVDALAIAIGTSHGAYKFTRKPTGDVLAIDRIKEIHARLP-NTHLVMHGSSSVPQELLDIINEYGGD 251 (347)
T ss_pred CCHHHHHHHHHHhCcCeEhhhhccccCCCCCCCCCChhhccHHHHHHHHhcCC-CCCEEEeCCCCCCHHHHHHHHHhcCC
Confidence 4688887755 68999998874 5533211012 24678899988773 58988866543
Q ss_pred -------CHHHHHHHHHcCCCEEEEchHHHHHhhh-------cC------hHHHHHHHHHHHHHHHHHHHHhCCCC
Q 019244 265 -------RGTDVFKALALGASGIFIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCRS 320 (344)
Q Consensus 265 -------~g~dv~kalalGAd~V~ig~~~l~~~~~-------~G------~~~v~~~l~~l~~el~~~m~~~G~~~ 320 (344)
.-+++.|++.+|..=|-+++-+..+... .. ..-.....+.+++.++..|..+|+..
T Consensus 252 ~~~~~G~~~e~i~~ai~~GI~KINi~Tdl~~a~~~~i~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~~ 327 (347)
T PRK09196 252 MPETYGVPVEEIQEGIKHGVRKVNIDTDLRLAMTGAIRRFLAENPSEFDPRKYLKPAMEAMKKICKARYEAFGTAG 327 (347)
T ss_pred ccccCCCCHHHHHHHHHCCCceEEeChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3477899999999999999987654321 00 11233445567888888888888753
|
|
| >PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=83.81 E-value=34 Score=32.38 Aligned_cols=107 Identities=21% Similarity=0.292 Sum_probs=71.3
Q ss_pred cCHHHHHHHH-HcCCcEEEEcc---CCCCCCCCchh--hHHHHHHHHHHccCCCcEEEecCCCC-HHHHHHHHHcCCCEE
Q 019244 208 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPA--TIMALEEVVKATQGRIPVFLDGGVRR-GTDVFKALALGASGI 280 (344)
Q Consensus 208 ~~~~~a~~~~-~~G~d~I~v~~---~gG~~~~~g~~--~~~~l~~i~~~~~~~~~via~GGIr~-g~dv~kalalGAd~V 280 (344)
.+|++|+... +.|+|.+-|+. ||-+ .+.| .++.|.++++.+ ++|+..=||=.. -+++.|++.+|..=|
T Consensus 155 T~pe~a~~Fv~~TgvD~LAvaiGt~HG~y---~~~p~Ld~~~L~~i~~~~--~vPLVlHGgSG~~~e~~~~ai~~Gi~Ki 229 (284)
T PRK12857 155 TDPEEARRFVEETGVDALAIAIGTAHGPY---KGEPKLDFDRLAKIKELV--NIPIVLHGSSGVPDEAIRKAISLGVRKV 229 (284)
T ss_pred CCHHHHHHHHHHHCCCEEeeccCcccccc---CCCCcCCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHcCCeEE
Confidence 4678887765 67999999874 5543 2333 467899998877 689988765444 456778999999999
Q ss_pred EEchHHHHHhhh-------cC------hHHHHHHHHHHHHHHHHHHHHhCCC
Q 019244 281 FIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 319 (344)
Q Consensus 281 ~ig~~~l~~~~~-------~G------~~~v~~~l~~l~~el~~~m~~~G~~ 319 (344)
-+++-+..+... .. ..-.....+.+++..+..|..+|+.
T Consensus 230 Ni~T~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 281 (284)
T PRK12857 230 NIDTNIREAFVARLREVLEKNPDEIDPRKILGPAREAAKEVIREKIRLFGSA 281 (284)
T ss_pred EeCcHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999987654210 00 0113334455666777777777654
|
|
| >cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE) | Back alignment and domain information |
|---|
Probab=83.70 E-value=13 Score=32.63 Aligned_cols=89 Identities=15% Similarity=0.036 Sum_probs=54.5
Q ss_pred cHHHHHHHHHhcCCcEEEEee-cC-HHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCC
Q 019244 187 SWKDVKWLQTITKLPILVKGV-LT-AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 264 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v-~~-~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr 264 (344)
..+.++++++.++.|+.+... .+ .+.++.+.++|+|+|.+ |++.. ....+.+..+.+ ..+.+..+-.-.
T Consensus 45 ~~~~~~~i~~~~~~~~~v~l~~~d~~~~~~~~~~~g~dgv~v--h~~~~----~~~~~~~~~~~~---~~~~~g~~~~~~ 115 (211)
T cd00429 45 GPPVVKALRKHTDLPLDVHLMVENPERYIEAFAKAGADIITF--HAEAT----DHLHRTIQLIKE---LGMKAGVALNPG 115 (211)
T ss_pred CHHHHHHHHhhCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEE--Cccch----hhHHHHHHHHHH---CCCeEEEEecCC
Confidence 456788888766566654443 22 35688888999999988 43310 112233333322 245555554554
Q ss_pred CHHHHHHHHHcCCCEEEEch
Q 019244 265 RGTDVFKALALGASGIFIGR 284 (344)
Q Consensus 265 ~g~dv~kalalGAd~V~ig~ 284 (344)
+..+..+.+..++|.+.++.
T Consensus 116 ~~~~~~~~~~~~~d~i~~~~ 135 (211)
T cd00429 116 TPVEVLEPYLDEVDLVLVMS 135 (211)
T ss_pred CCHHHHHHHHhhCCEEEEEE
Confidence 56677777777799998875
|
This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis. |
| >COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription] | Back alignment and domain information |
|---|
Probab=83.60 E-value=2.2 Score=37.13 Aligned_cols=43 Identities=35% Similarity=0.443 Sum_probs=37.5
Q ss_pred cHHHHHHHHHhcCCcEEEEee-cCHHHHHHHHHcCCcEEEEccC
Q 019244 187 SWKDVKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSNH 229 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v-~~~~~a~~~~~~G~d~I~v~~~ 229 (344)
--+.++++.++++.||+..|- .+.|++..++++||-++..|+.
T Consensus 132 ~Pkvi~~i~~~t~~piIAGGLi~t~Eev~~Al~aGA~avSTs~~ 175 (181)
T COG1954 132 MPKVIKEITEKTHIPIIAGGLIETEEEVREALKAGAVAVSTSNT 175 (181)
T ss_pred cHHHHHHHHHhcCCCEEeccccccHHHHHHHHHhCcEEEeecch
Confidence 346899999999999999874 7899999999999999987764
|
|
| >PRK07084 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=83.42 E-value=13 Score=35.79 Aligned_cols=94 Identities=16% Similarity=0.256 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCcc-------------------ccCCHHHHHHHHHHHHHcCCcEEEeccCCccccccHHHHHhhcCCCC
Q 019244 91 YATARAASAAGTIM-------------------VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP 151 (344)
Q Consensus 91 ~~lA~aA~~~g~~~-------------------~~~d~~~~~~~i~~a~~ag~~~l~~tvd~~~~g~r~~~~~~~~~~~~ 151 (344)
..+++.|..+|+.. .+.||+...+++++- |+++|.+.+.+.+.
T Consensus 129 ~evv~~Ah~~GvsVEaElG~igg~ed~~~~~~~~~T~peeA~~Fv~~T---gvD~LAvaiGt~HG--------------- 190 (321)
T PRK07084 129 KKVVEYAHQFDVTVEGELGVLAGVEDEVSAEHHTYTQPEEVEDFVKKT---GVDSLAISIGTSHG--------------- 190 (321)
T ss_pred HHHHHHHHHcCCeEEEEEeeecCccCCccCcccccCCHHHHHHHHHHh---CCCEEeeccccccc---------------
Q ss_pred cccccccccccccccccccchhhHHHHhhcC----CCCCcHHHHHHHHHhc-CCcEEEEeec------------------
Q 019244 152 FLTLKNFQGLDLGKMDEANDSGLAAYVAGQI----DRSLSWKDVKWLQTIT-KLPILVKGVL------------------ 208 (344)
Q Consensus 152 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~~i~~~~-~~PvivK~v~------------------ 208 (344)
....+ .+.++|+.+++|++.+ ++|+++-+..
T Consensus 191 --------------------------~Y~~~~~~~~p~Ld~d~L~~I~~~~~~vPLVLHGgSg~~~~~~~~~~~~g~~~~ 244 (321)
T PRK07084 191 --------------------------AYKFKPGQCPPPLRFDILEEIEKRIPGFPIVLHGSSSVPQEYVKTINEYGGKLK 244 (321)
T ss_pred --------------------------cccCCCCCCCCccCHHHHHHHHHhcCCCCEEEeCCCCCcHHHHHHHHHhcCccc
Q ss_pred -----CHHHHHHHHHcCCcEEEEcc
Q 019244 209 -----TAEDARIAVQAGAAGIIVSN 228 (344)
Q Consensus 209 -----~~~~a~~~~~~G~d~I~v~~ 228 (344)
+.++.+++++.|+.-|-++.
T Consensus 245 ~~~Gi~~e~~~kai~~GI~KINi~T 269 (321)
T PRK07084 245 DAIGIPEEQLRKAAKSAVCKINIDS 269 (321)
T ss_pred cCCCCCHHHHHHHHHcCCceeccch
|
|
| >PF00923 Transaldolase: Transaldolase; InterPro: IPR001585 Transaldolase (2 | Back alignment and domain information |
|---|
Probab=83.32 E-value=5.4 Score=37.73 Aligned_cols=98 Identities=24% Similarity=0.216 Sum_probs=64.0
Q ss_pred HHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCc------------hhhHHHHHHHHHHcc--CCC
Q 019244 190 DVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYV------------PATIMALEEVVKATQ--GRI 255 (344)
Q Consensus 190 ~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g------------~~~~~~l~~i~~~~~--~~~ 255 (344)
.++.+.+. ++|+-+=.+.|++.+..+.++|+++|...- ||-.+++ .+.+..+.++.+... +--
T Consensus 123 A~~~L~~~-GI~vn~T~vfs~~Qa~~aa~AGa~~isp~v--gRld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 199 (287)
T PF00923_consen 123 AIKELEAE-GIPVNATLVFSVEQAIAAAQAGASYISPYV--GRLDDWGKRLQGEDALKGEHDGVALAKEIYQYYRKYGYK 199 (287)
T ss_dssp HHHHHHHT-T-EEEEEEE-SHHHHHHHHHTT-SEEEEBH--HHHHHHHHHHSCCHHCGGGSHHHHHHHHHHHHHHHHTES
T ss_pred HHHHHhhC-CceEEEEecccHHHHHHHHhcccceEeeeH--HHHHHHhhhhcccccccccccHHHHHHHHHHHHHHhCCC
Confidence 34555543 899999999999999999999999987742 2211222 234444444444321 213
Q ss_pred cEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhh
Q 019244 256 PVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAA 292 (344)
Q Consensus 256 ~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~ 292 (344)
+-+....+|+..++. ..+|+|.|-+.-..+..+..
T Consensus 200 t~v~~as~r~~~~v~--~l~G~d~vTip~~~l~~l~~ 234 (287)
T PF00923_consen 200 TKVLAASFRNVQQVL--ALAGADIVTIPPKVLEALLE 234 (287)
T ss_dssp SEEEEBSSSSHHHHH--HTTTSSEEEEEHHHHHHHHH
T ss_pred cceeccCcCCHHHHH--HHHCCCeEECCHHHHHHHHh
Confidence 445557799999998 77899999888888776543
|
2.1.2 from EC) catalyses the reversible transfer of a three-carbon ketol unit from sedoheptulose 7-phosphate to glyceraldehyde 3-phosphate to form erythrose 4-phosphate and fructose 6-phosphate. This enzyme, together with transketolase, provides a link between the glycolytic and pentose-phosphate pathways. Transaldolase is an enzyme of about 34 kDa whose sequence has been well conserved throughout evolution. A lysine has been implicated [] in the catalytic mechanism of the enzyme; it acts as a nucleophilic group that attacks the carbonyl group of fructose-6-phosphate.; GO: 0005975 carbohydrate metabolic process; PDB: 3R5E_A 1F05_A 1I2P_A 1UCW_A 1ONR_A 1I2O_B 3KOF_A 3CWN_B 1I2N_A 1I2Q_A .... |
| >PRK13399 fructose-1,6-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=83.18 E-value=28 Score=33.95 Aligned_cols=112 Identities=14% Similarity=0.252 Sum_probs=75.1
Q ss_pred cCHHHHHHHH-HcCCcEEEEcc---CCCCCCCCch----hhHHHHHHHHHHccCCCcEEEecCCCCH-------------
Q 019244 208 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVP----ATIMALEEVVKATQGRIPVFLDGGVRRG------------- 266 (344)
Q Consensus 208 ~~~~~a~~~~-~~G~d~I~v~~---~gG~~~~~g~----~~~~~l~~i~~~~~~~~~via~GGIr~g------------- 266 (344)
.+|++|.... +-|+|.+-++. ||-+.....| -.++.|.+|++.+. ++|+..=||=..+
T Consensus 173 T~PeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~L~~drl~eI~~~v~-~vPLVLHGgSGvp~~~~~~~~~~g~~ 251 (347)
T PRK13399 173 TDPDQAVDFVQRTGVDALAIAIGTSHGAYKFTRKPDGDILAIDRIEEIHARLP-NTHLVMHGSSSVPQELQEIINAYGGK 251 (347)
T ss_pred CCHHHHHHHHHHHCcCEEhhhhccccCCcCCCCCCChhhccHHHHHHHHhhcC-CCCEEEeCCCCCCHHHHHHHHHhcCC
Confidence 4688887766 57999998874 5533111011 24568899988772 5999998765544
Q ss_pred ---------HHHHHHHHcCCCEEEEchHHHHHhhh-------cC------hHHHHHHHHHHHHHHHHHHHHhCCCC
Q 019244 267 ---------TDVFKALALGASGIFIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCRS 320 (344)
Q Consensus 267 ---------~dv~kalalGAd~V~ig~~~l~~~~~-------~G------~~~v~~~l~~l~~el~~~m~~~G~~~ 320 (344)
+++.|++.+|..=|-+++-+..+... .. ..-.....+.+++-++..|..+|+..
T Consensus 252 ~~~~~g~~~e~~~kai~~GI~KINi~Tdl~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~a~~~~v~~~i~l~gs~~ 327 (347)
T PRK13399 252 MKETYGVPVEEIQRGIKHGVRKVNIDTDIRLAMTGAIRKVLAEHPSEFDPRKALKPAMKAMTALCKQRFEAFGTAG 327 (347)
T ss_pred ccccCCCCHHHHHHHHHCCCeEEEeChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 78999999999999999977554221 00 11233344567777888888888754
|
|
| >PRK13305 sgbH 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=83.11 E-value=0.48 Score=43.12 Aligned_cols=96 Identities=15% Similarity=0.136 Sum_probs=54.4
Q ss_pred cCHHHHHHHHHcCCcEEEEccCCCCCCCCc-hhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHH
Q 019244 208 LTAEDARIAVQAGAAGIIVSNHGARQLDYV-PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 286 (344)
Q Consensus 208 ~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g-~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~ 286 (344)
.|.++++.+.+.|++-+++. .+......| ..+..-+..+++..+.+.+++..||||- ....+.-..+.|.+.+|||+
T Consensus 117 ~t~~~~~~l~~~g~~~~v~h-~a~~a~~~G~v~s~~e~~~ir~~~~~~~~i~VtpGIr~-~~~~~~dq~rvd~iVVGR~I 194 (218)
T PRK13305 117 WTLDDARDWHRIGVRQAIYH-RGRDAQASGQQWGEADLARMKALSDIGLELSITGGITP-ADLPLFKDIRVKAFIAGRAL 194 (218)
T ss_pred cCcchHHHHHHcCCHHHHHH-HHHHHHHhCCCCCHHHHHHHHHHhCCCCcEEEeCCcCc-cccccccccCCCEEEECCcc
Confidence 45566666777787643321 010000111 1222335555555555677999999993 33334556788999999999
Q ss_pred HHHhhhcChHHHHHHHHHHHHHHHH
Q 019244 287 VYSLAAEGEKGVRRVLEMLREEFEL 311 (344)
Q Consensus 287 l~~~~~~G~~~v~~~l~~l~~el~~ 311 (344)
..+ +......+.+.+++..
T Consensus 195 t~A------~dP~~aa~~i~~~i~~ 213 (218)
T PRK13305 195 AGA------ANPAQVAADFHAQIDA 213 (218)
T ss_pred cCC------CCHHHHHHHHHHHHHH
Confidence 753 2222345566666644
|
|
| >TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase | Back alignment and domain information |
|---|
Probab=82.74 E-value=12 Score=36.14 Aligned_cols=74 Identities=20% Similarity=0.270 Sum_probs=53.5
Q ss_pred HHHHHHHcCCcEEEEcc---CCCCCCCCc---hhhHHHHHHHHHHccC-CCcEEEecCCCCHHHHHHHHHcCCCEEEEch
Q 019244 212 DARIAVQAGAAGIIVSN---HGARQLDYV---PATIMALEEVVKATQG-RIPVFLDGGVRRGTDVFKALALGASGIFIGR 284 (344)
Q Consensus 212 ~a~~~~~~G~d~I~v~~---~gG~~~~~g---~~~~~~l~~i~~~~~~-~~~via~GGIr~g~dv~kalalGAd~V~ig~ 284 (344)
.+..+.++|++.|-++. -||..++.| .++++.+.++++.++. ++-++..-|+.+..|+-++...|++.|-++.
T Consensus 29 ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~a~~~gvd~iri~~ 108 (333)
T TIGR03217 29 IAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVKRAKVAVLLLPGIGTVHDLKAAYDAGARTVRVAT 108 (333)
T ss_pred HHHHHHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCCCCEEEEEeccCccCHHHHHHHHHCCCCEEEEEe
Confidence 35678899999999962 134444433 3566777777776542 4445666788899999999999999999886
Q ss_pred H
Q 019244 285 P 285 (344)
Q Consensus 285 ~ 285 (344)
.
T Consensus 109 ~ 109 (333)
T TIGR03217 109 H 109 (333)
T ss_pred c
Confidence 4
|
Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated. |
| >KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=82.70 E-value=5.4 Score=39.52 Aligned_cols=231 Identities=19% Similarity=0.273 Sum_probs=131.7
Q ss_pred hcccccceeecccC-CCCCCCcceeec-ccccccceeecccccccccCChhhHHHHHHHHHcCCcc-ccC--CHHHHHHH
Q 019244 41 NAFSRILFRPRILI-DVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM-VYK--DRNVVAQL 115 (344)
Q Consensus 41 ~~f~~i~l~pr~l~-~~~~vd~st~l~-g~~l~~Pi~iapm~~~~~~~~~~~~~lA~aA~~~g~~~-~~~--d~~~~~~~ 115 (344)
-.|+++.|.|.-.. ..++||+++.|- ..+++.|++.|||.- -.|..+|.+.+.+|... ++. +|+.....
T Consensus 30 LtynDfliLPg~idF~s~eVsL~t~ltr~itl~tPlvsSpMDT------Vtes~MAiaMAl~ggIg~IHhNctpe~QA~~ 103 (503)
T KOG2550|consen 30 LTYNDFLILPGFIDFASDEVSLQTKLTRNITLNTPLVSSPMDT------VTESEMAIAMALLGGIGFIHHNCTPEDQADM 103 (503)
T ss_pred ccccceeecccccccccccceeehhhhhcccccCceeccCCcc------cchhHHHHHHHhcCCceeeecCCCHHHHHHH
Confidence 56999999998763 456899999974 578999999999952 24667888888887655 433 57777788
Q ss_pred HHHHHHc--CC--cEEEeccCCccccccHHHHHhhcC-CCCc----ccccccccccccccc--cccchhhHHHHhhcC--
Q 019244 116 VRRAERA--GF--KAIALTVDTPRLGRREADIKNRFT-LPPF----LTLKNFQGLDLGKMD--EANDSGLAAYVAGQI-- 182 (344)
Q Consensus 116 i~~a~~a--g~--~~l~~tvd~~~~g~r~~~~~~~~~-~~~g----~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-- 182 (344)
+++++.. |+ ..+++.++..+....+.-.+.+|. +|.- .+.+.++.+....+. ..+....++.+.+..
T Consensus 104 v~~vK~~~~g~~~~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~~~~~~~~~~vmt~~~~~ 183 (503)
T KOG2550|consen 104 VRRVKNYENGFINNPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFLEDNSLLVSDVMTKNPVT 183 (503)
T ss_pred HHHHHHhhcccccCCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhhhhhhcccchhhhhccccccc
Confidence 8888864 33 234555554443323333334443 3321 111111111110000 011111222222211
Q ss_pred -CCCCcHHHHHHHHHhc---CCcEEE------------------------Ee----------ecC----HHHHHHHHHcC
Q 019244 183 -DRSLSWKDVKWLQTIT---KLPILV------------------------KG----------VLT----AEDARIAVQAG 220 (344)
Q Consensus 183 -~~~~~~~~i~~i~~~~---~~Pviv------------------------K~----------v~~----~~~a~~~~~~G 220 (344)
+...+++...++-+.. ++||+= |. +-+ .+....+.++|
T Consensus 184 ~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~k~~~yPlask~~~kqll~gAaiGTre~dK~rl~ll~~aG 263 (503)
T KOG2550|consen 184 GAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLMKNRDYPLASKDSTKQLLCGAAIGTRDDDKERLDLLVQAG 263 (503)
T ss_pred ccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehhhhhhhcCCCccccCcccceeeeeccccccchhHHHHHhhhcC
Confidence 1112333333332222 234332 21 111 23356788999
Q ss_pred CcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 019244 221 AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 283 (344)
Q Consensus 221 ~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig 283 (344)
+|.|+++..-|. ..-.++.+..+.+.. ++++||+ |-+-+.+.+...++.|||.+=+|
T Consensus 264 vdvviLDSSqGn----S~~qiemik~iK~~y-P~l~Via-GNVVT~~qa~nLI~aGaDgLrVG 320 (503)
T KOG2550|consen 264 VDVVILDSSQGN----SIYQLEMIKYIKETY-PDLQIIA-GNVVTKEQAANLIAAGADGLRVG 320 (503)
T ss_pred CcEEEEecCCCc----chhHHHHHHHHHhhC-CCceeec-cceeeHHHHHHHHHccCceeEec
Confidence 999999865442 123456677776665 3788887 77888999999999999986544
|
|
| >PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=82.54 E-value=14 Score=33.91 Aligned_cols=96 Identities=17% Similarity=0.105 Sum_probs=0.0
Q ss_pred HHHHHHHHhcC--CcEEEEee-------cCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEE
Q 019244 189 KDVKWLQTITK--LPILVKGV-------LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 259 (344)
Q Consensus 189 ~~i~~i~~~~~--~PvivK~v-------~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via 259 (344)
..|++|++..+ .|+..... .-..-+..+...|+|+|+|.-.|....+.....+..+.+..+....+..+++
T Consensus 40 ~vi~~i~~~~~~~~pvSAtiGDlp~~p~~~~~aa~~~a~~GvdyvKvGl~g~~~~~~a~e~l~~v~~av~~~~~~~~vVA 119 (235)
T PF04476_consen 40 WVIREIVAAVPGRKPVSATIGDLPMKPGTASLAALGAAATGVDYVKVGLFGCKDYDEAIEALEAVVRAVKDFDPDKKVVA 119 (235)
T ss_pred HHHHHHHHHcCCCCceEEEecCCCCCchHHHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHHHHHHHhhhCCCcEEEE
Q ss_pred ecCCCC-------HHHHHHHHH-cCCCEEEEch
Q 019244 260 DGGVRR-------GTDVFKALA-LGASGIFIGR 284 (344)
Q Consensus 260 ~GGIr~-------g~dv~kala-lGAd~V~ig~ 284 (344)
.+=--. +.++.+..+ .|++.+|+-|
T Consensus 120 v~yAD~~r~~~~~p~~l~~~a~~aG~~gvMlDT 152 (235)
T PF04476_consen 120 VGYADAQRVGSISPLDLPEIAAEAGFDGVMLDT 152 (235)
T ss_pred EEecchhhhcCCCHHHHHHHHHHcCCCEEEEec
|
|
| >TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase | Back alignment and domain information |
|---|
Probab=82.52 E-value=14 Score=35.00 Aligned_cols=71 Identities=17% Similarity=0.177 Sum_probs=45.8
Q ss_pred HHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccC---CCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHH
Q 019244 211 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQG---RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 287 (344)
Q Consensus 211 ~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~---~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l 287 (344)
+-++...++|||.|.+-. + ..+.+.+.++.+.++. ++|++...+-.-...+...-.+|.+.|..+..++
T Consensus 173 ~Ra~ay~eAGAD~ifv~~--~------~~~~~ei~~~~~~~~~~~p~~pl~~~~~~~~~~~~~eL~~lG~~~v~~~~~~~ 244 (285)
T TIGR02320 173 KRAEAYAEAGADGIMIHS--R------KKDPDEILEFARRFRNHYPRTPLVIVPTSYYTTPTDEFRDAGISVVIYANHLL 244 (285)
T ss_pred HHHHHHHHcCCCEEEecC--C------CCCHHHHHHHHHHhhhhCCCCCEEEecCCCCCCCHHHHHHcCCCEEEEhHHHH
Confidence 336778999999999841 1 2345555556555532 5688765431111235556678999999998777
Q ss_pred HH
Q 019244 288 YS 289 (344)
Q Consensus 288 ~~ 289 (344)
++
T Consensus 245 ~a 246 (285)
T TIGR02320 245 RA 246 (285)
T ss_pred HH
Confidence 65
|
A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model. |
| >PRK02615 thiamine-phosphate pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=82.42 E-value=6.4 Score=38.39 Aligned_cols=78 Identities=21% Similarity=0.198 Sum_probs=52.3
Q ss_pred HHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHH
Q 019244 190 DVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDV 269 (344)
Q Consensus 190 ~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv 269 (344)
.+..+.+.++.++++- +....+...|+|+|.+... | .+ +.+.++.++.+ .+.....+|..++
T Consensus 192 ~L~~l~~~~~~~lIIN-----D~vdlAl~~~aDGVHLgq~-----d--l~----~~~aR~llg~~--~iIG~S~Hs~~e~ 253 (347)
T PRK02615 192 KLKELCHRYGALFIVN-----DRVDIALAVDADGVHLGQE-----D--LP----LAVARQLLGPE--KIIGRSTTNPEEM 253 (347)
T ss_pred HHHHHHHHhCCeEEEe-----ChHHHHHHcCCCEEEeChh-----h--cC----HHHHHHhcCCC--CEEEEecCCHHHH
Confidence 4666777778887764 3456788899999977321 1 11 22334334322 2445567899999
Q ss_pred HHHHHcCCCEEEEchH
Q 019244 270 FKALALGASGIFIGRP 285 (344)
Q Consensus 270 ~kalalGAd~V~ig~~ 285 (344)
.+|...|||.|++|.-
T Consensus 254 ~~A~~~GaDYI~lGPv 269 (347)
T PRK02615 254 AKAIAEGADYIGVGPV 269 (347)
T ss_pred HHHHHcCCCEEEECCC
Confidence 9999999999999943
|
|
| >cd02911 arch_FMN Archeal FMN-binding domain | Back alignment and domain information |
|---|
Probab=82.26 E-value=15 Score=33.63 Aligned_cols=40 Identities=28% Similarity=0.278 Sum_probs=33.1
Q ss_pred CcHHHHHHHHHhcCCcEEEE-eecCHHHHHHHHHcCCcEEEEc
Q 019244 186 LSWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVS 227 (344)
Q Consensus 186 ~~~~~i~~i~~~~~~PvivK-~v~~~~~a~~~~~~G~d~I~v~ 227 (344)
.+|+.|++++ .++||+.= ++.+.+++..+++.|+|+|-++
T Consensus 180 ad~~~I~~i~--~~ipVIgnGgI~s~eda~~~l~~GaD~VmiG 220 (233)
T cd02911 180 ADLKKIRDIS--TELFIIGNNSVTTIESAKEMFSYGADMVSVA 220 (233)
T ss_pred CcHHHHHHhc--CCCEEEEECCcCCHHHHHHHHHcCCCEEEEc
Confidence 4688888887 57998764 4689999999999999999884
|
This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown. |
| >TIGR00742 yjbN tRNA dihydrouridine synthase A | Back alignment and domain information |
|---|
Probab=82.21 E-value=14 Score=35.51 Aligned_cols=41 Identities=22% Similarity=0.376 Sum_probs=34.0
Q ss_pred CcHHHHHHHHHhc-CCcEEEE-eecCHHHHHHHHHcCCcEEEEc
Q 019244 186 LSWKDVKWLQTIT-KLPILVK-GVLTAEDARIAVQAGAAGIIVS 227 (344)
Q Consensus 186 ~~~~~i~~i~~~~-~~PvivK-~v~~~~~a~~~~~~G~d~I~v~ 227 (344)
..|+.+.++++.. ++||+.= ++.+.+++....+ |+|+|-++
T Consensus 181 ~~~~~i~~vk~~~~~ipVi~NGdI~s~~da~~~l~-g~dgVMig 223 (318)
T TIGR00742 181 LRYERVYQLKKDFPHLTIEINGGIKNSEQIKQHLS-HVDGVMVG 223 (318)
T ss_pred hhHHHHHHHHHhCCCCcEEEECCcCCHHHHHHHHh-CCCEEEEC
Confidence 4788899999887 7998654 4689999998886 99999884
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI | Back alignment and domain information |
|---|
Probab=82.09 E-value=3.7 Score=35.55 Aligned_cols=43 Identities=26% Similarity=0.454 Sum_probs=37.3
Q ss_pred CCcHHHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEc
Q 019244 185 SLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVS 227 (344)
Q Consensus 185 ~~~~~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~ 227 (344)
...++.++++++..++||++-+..+.+++..+.++|+|++.++
T Consensus 136 ~~~~~~~~~~~~~~~~pv~a~GGi~~~~i~~~~~~Ga~~i~~g 178 (196)
T cd00564 136 PLGLELLREIAELVEIPVVAIGGITPENAAEVLAAGADGVAVI 178 (196)
T ss_pred CCCHHHHHHHHHhCCCCEEEECCCCHHHHHHHHHcCCCEEEEe
Confidence 3467889999887889998887778999999999999999885
|
TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions. |
| >PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=81.63 E-value=13 Score=35.07 Aligned_cols=92 Identities=25% Similarity=0.258 Sum_probs=59.4
Q ss_pred HHHHHHHHHhcCCcEEEEee--cCHHH----HHHHHHcCCcEEEEccCCCCCCCCc--hhhHHHHHHHHHHccCCCcEEE
Q 019244 188 WKDVKWLQTITKLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYV--PATIMALEEVVKATQGRIPVFL 259 (344)
Q Consensus 188 ~~~i~~i~~~~~~PvivK~v--~~~~~----a~~~~~~G~d~I~v~~~gG~~~~~g--~~~~~~l~~i~~~~~~~~~via 259 (344)
.+.++++.+ ++.||.+|-- .++++ ++.+...|-+-|.+.-.|-+ +... ...+..++.+++ . ..|||.
T Consensus 120 tdLL~a~~~-tgkpV~lKkGq~~t~~e~~~aaeki~~~GN~~viLcERG~t-Fgy~~lv~D~r~ip~mk~-~--~lPVI~ 194 (290)
T PLN03033 120 TDLLVAAAK-TGKIINIKKGQFCAPSVMRNSAEKVRLAGNPNVMVCERGTM-FGYNDLIVDPRNLEWMRE-A--NCPVVA 194 (290)
T ss_pred HHHHHHHHc-cCCeEEeCCCCCCCHHHHHHHHHHHHHcCCCcEEEEeCCCC-cCCCCcccchhhhHHHHh-c--CCCEEE
Confidence 345666654 6899999976 56766 67788899999988765532 2111 124455665543 2 689998
Q ss_pred e--------------------cCCCCHHH--HHHHHHcCCCEEEEch
Q 019244 260 D--------------------GGVRRGTD--VFKALALGASGIFIGR 284 (344)
Q Consensus 260 ~--------------------GGIr~g~d--v~kalalGAd~V~ig~ 284 (344)
| ||-|.--- +..|+++|||.+++-.
T Consensus 195 DpSHsvQ~pg~~~~~~~g~~s~G~Re~V~~larAAvA~GaDGlfiEv 241 (290)
T PLN03033 195 DITHSLQQPAGKKLDGGGVASGGLRELIPCIARTAVAVGVDGIFMEV 241 (290)
T ss_pred eCCccccCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCEEEEEe
Confidence 5 34443222 2367789999999876
|
|
| >PF01680 SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p is a highly conserved protein involved in growth arrest in Saccharomyces cerevisiae (Baker's yeast) [] | Back alignment and domain information |
|---|
Probab=81.51 E-value=30 Score=30.58 Aligned_cols=84 Identities=25% Similarity=0.270 Sum_probs=55.5
Q ss_pred HHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccC--------CCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCC
Q 019244 194 LQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNH--------GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 265 (344)
Q Consensus 194 i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~--------gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~ 265 (344)
+.+..+.-||. .+.++|+|+.+.++|+-++...-. ||- .-.+....+.+|.+++ .+||++---|..
T Consensus 9 la~mlkGGVIM-DV~n~eQAkIAE~AGA~AVMaLervPadiR~~GGV---aRMsDP~~I~eI~~aV--sIPVMAK~RIGH 82 (208)
T PF01680_consen 9 LAQMLKGGVIM-DVTNAEQAKIAEEAGAVAVMALERVPADIRAAGGV---ARMSDPKMIKEIMDAV--SIPVMAKVRIGH 82 (208)
T ss_dssp HHHTTTTEEEE-EESSHHHHHHHHHHT-SEEEE-SS-HHHHHHTTS------S--HHHHHHHHHH---SSEEEEEEETT-
T ss_pred HHHHhcCCeEE-EecCHHHHHHHHHhCCeEEEEeccCCHhHHhcCCc---cccCCHHHHHHHHHhe--Eeceeeccccce
Confidence 33444555554 368999999999999999987532 331 1135667888999888 899999998888
Q ss_pred HHHHHHHHHcCCCEEEEc
Q 019244 266 GTDVFKALALGASGIFIG 283 (344)
Q Consensus 266 g~dv~kalalGAd~V~ig 283 (344)
-.++--.=++|.|.+==.
T Consensus 83 fvEAqiLealgVD~IDES 100 (208)
T PF01680_consen 83 FVEAQILEALGVDYIDES 100 (208)
T ss_dssp HHHHHHHHHTT-SEEEEE
T ss_pred eehhhhHHHhCCceeccc
Confidence 777765567999987433
|
Sor1 (singlet oxygen resistance) is essential in pyridoxine (vitamin B6) synthesis in Cercospora nicotianae and Aspergillus flavus. Pyridoxine quenches singlet oxygen at a rate comparable to that of vitamins C and E, two of the most highly efficient biological antioxidants, suggesting a previously unknown role for pyridoxine in active oxygen resistance [].; GO: 0042823 pyridoxal phosphate biosynthetic process; PDB: 2ISS_A 1ZNN_B 2ZBT_B 2NV2_I 2NV1_C 4ADS_C 4ADU_B 4ADT_B 3FEM_F 3O07_A .... |
| >KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=81.14 E-value=4.8 Score=35.84 Aligned_cols=39 Identities=26% Similarity=0.325 Sum_probs=33.1
Q ss_pred HHHHHHHHhcCCcEE-EEeecCHHHHHHHHHcCCcEEEEc
Q 019244 189 KDVKWLQTITKLPIL-VKGVLTAEDARIAVQAGAAGIIVS 227 (344)
Q Consensus 189 ~~i~~i~~~~~~Pvi-vK~v~~~~~a~~~~~~G~d~I~v~ 227 (344)
..++|+|++++.+.| +-+..+++.+.++.++||+.|+..
T Consensus 158 ~KV~~lR~kyp~l~ievDGGv~~~ti~~~a~AGAN~iVaG 197 (224)
T KOG3111|consen 158 PKVEWLREKYPNLDIEVDGGVGPSTIDKAAEAGANMIVAG 197 (224)
T ss_pred HHHHHHHHhCCCceEEecCCcCcchHHHHHHcCCCEEEec
Confidence 479999998866655 777789999999999999999764
|
|
| >TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II | Back alignment and domain information |
|---|
Probab=81.09 E-value=17 Score=34.69 Aligned_cols=80 Identities=13% Similarity=0.133 Sum_probs=55.7
Q ss_pred HHHHHHHHhcCCcEEEEeec---C-HHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCC
Q 019244 189 KDVKWLQTITKLPILVKGVL---T-AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 264 (344)
Q Consensus 189 ~~i~~i~~~~~~PvivK~v~---~-~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr 264 (344)
+.|+++++.++.|+.+-... . .+..+.+.+.|++.|.++ +| .|. ..+.++++. .+.|++ -+.
T Consensus 52 ~~i~~~~~~t~~pfgvn~~~~~~~~~~~~~~~~~~~v~~v~~~--~g------~p~-~~i~~lk~~---g~~v~~--~v~ 117 (307)
T TIGR03151 52 KEIRKVKELTDKPFGVNIMLLSPFVDELVDLVIEEKVPVVTTG--AG------NPG-KYIPRLKEN---GVKVIP--VVA 117 (307)
T ss_pred HHHHHHHHhcCCCcEEeeecCCCCHHHHHHHHHhCCCCEEEEc--CC------CcH-HHHHHHHHc---CCEEEE--EcC
Confidence 46888998888898877653 2 234566889999999773 23 222 344444432 466665 567
Q ss_pred CHHHHHHHHHcCCCEEEE
Q 019244 265 RGTDVFKALALGASGIFI 282 (344)
Q Consensus 265 ~g~dv~kalalGAd~V~i 282 (344)
|..++.++..+|||.+.+
T Consensus 118 s~~~a~~a~~~GaD~Ivv 135 (307)
T TIGR03151 118 SVALAKRMEKAGADAVIA 135 (307)
T ss_pred CHHHHHHHHHcCCCEEEE
Confidence 889999999999999987
|
This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase. |
| >smart00052 EAL Putative diguanylate phosphodiesterase | Back alignment and domain information |
|---|
Probab=80.94 E-value=13 Score=33.12 Aligned_cols=89 Identities=12% Similarity=0.091 Sum_probs=60.2
Q ss_pred HHHHHHHHhcCCcEEEEee-cCHHHHHHHHHcCCcEEEEccCCCCCCC---CchhhHHHHHHHHHHccCCCcEEEecCCC
Q 019244 189 KDVKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSNHGARQLD---YVPATIMALEEVVKATQGRIPVFLDGGVR 264 (344)
Q Consensus 189 ~~i~~i~~~~~~PvivK~v-~~~~~a~~~~~~G~d~I~v~~~gG~~~~---~g~~~~~~l~~i~~~~~~~~~via~GGIr 264 (344)
+.++.+++. ++.+.+-.. ........+....+|+|.++..--+... .....+..+..+.+.. .+.||+. ||.
T Consensus 137 ~~i~~l~~~-G~~ialddfg~~~~~~~~l~~l~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~--~~~via~-gVe 212 (241)
T smart00052 137 ATLQRLREL-GVRIALDDFGTGYSSLSYLKRLPVDLLKIDKSFVRDLQTDPEDEAIVQSIIELAQKL--GLQVVAE-GVE 212 (241)
T ss_pred HHHHHHHHC-CCEEEEeCCCCcHHHHHHHHhCCCCeEEECHHHHhhhccChhHHHHHHHHHHHHHHC--CCeEEEe-cCC
Confidence 456777664 888887765 3456667888899999999742111111 1122344444444443 6888886 599
Q ss_pred CHHHHHHHHHcCCCEEE
Q 019244 265 RGTDVFKALALGASGIF 281 (344)
Q Consensus 265 ~g~dv~kalalGAd~V~ 281 (344)
+..+...+..+|.+.++
T Consensus 213 ~~~~~~~l~~~Gi~~~Q 229 (241)
T smart00052 213 TPEQLDLLRSLGCDYGQ 229 (241)
T ss_pred CHHHHHHHHHcCCCEEe
Confidence 99999999999999875
|
Putative diguanylate phosphodiesterase, present in a variety of bacteria. |
| >PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=80.86 E-value=19 Score=35.66 Aligned_cols=88 Identities=22% Similarity=0.216 Sum_probs=59.1
Q ss_pred HHHHHHHHHh-cCCcEEEEe--ecCHHH-HHHHHHcCCcEEEEccCCCCCCCCchhhHH-HHHHHHHHccCCCcEEE-ec
Q 019244 188 WKDVKWLQTI-TKLPILVKG--VLTAED-ARIAVQAGAAGIIVSNHGARQLDYVPATIM-ALEEVVKATQGRIPVFL-DG 261 (344)
Q Consensus 188 ~~~i~~i~~~-~~~PvivK~--v~~~~~-a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~-~l~~i~~~~~~~~~via-~G 261 (344)
.+.+++|++. .+.|+.+=. ...+.. ++.+.++|+|.+++...++ ..++. ++..+++ . .+.+.. .-
T Consensus 214 ~~iVk~Lr~~~~~~~I~~DLK~~Di~~~vv~~~a~aGAD~vTVH~ea~------~~ti~~ai~~akk-~--GikvgVD~l 284 (391)
T PRK13307 214 LEVISKIREVRPDAFIVADLKTLDTGNLEARMAADATADAVVISGLAP------ISTIEKAIHEAQK-T--GIYSILDML 284 (391)
T ss_pred HHHHHHHHHhCCCCeEEEEecccChhhHHHHHHHhcCCCEEEEeccCC------HHHHHHHHHHHHH-c--CCEEEEEEc
Confidence 3568999987 467776643 333334 7789999999999964332 22333 3333332 2 355555 55
Q ss_pred CCCCHHHHHHHHHcCCCEEEEch
Q 019244 262 GVRRGTDVFKALALGASGIFIGR 284 (344)
Q Consensus 262 GIr~g~dv~kalalGAd~V~ig~ 284 (344)
+..+..+.++.+..|.|.|.+.+
T Consensus 285 np~tp~e~i~~l~~~vD~Vllht 307 (391)
T PRK13307 285 NVEDPVKLLESLKVKPDVVELHR 307 (391)
T ss_pred CCCCHHHHHHHhhCCCCEEEEcc
Confidence 67788889998899999999886
|
|
| >cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites | Back alignment and domain information |
|---|
Probab=80.84 E-value=3 Score=37.78 Aligned_cols=42 Identities=17% Similarity=0.326 Sum_probs=35.3
Q ss_pred cHHHHHHHHHhcCCcEEEEee-cCHHHHHHHHHcCCcEEEEcc
Q 019244 187 SWKDVKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSN 228 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v-~~~~~a~~~~~~G~d~I~v~~ 228 (344)
.++.++++++.+++|+++-+- .+++++..+.+.|+|+|.++.
T Consensus 144 ~~~~i~~i~~~~~~Pvi~~GGI~~~~~v~~~l~~GadgV~vgS 186 (236)
T cd04730 144 TFALVPEVRDAVDIPVIAAGGIADGRGIAAALALGADGVQMGT 186 (236)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCHHHHHHHHHcCCcEEEEch
Confidence 467899999888999988765 456999999999999999964
|
NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.79 E-value=3 Score=37.32 Aligned_cols=49 Identities=27% Similarity=0.429 Sum_probs=40.2
Q ss_pred hhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHH
Q 019244 239 ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 289 (344)
Q Consensus 239 ~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~ 289 (344)
+..+.+..+.... .-||+..|||+-.+|..-+..+|.++|.+|+++..+
T Consensus 168 ~~~E~l~~~~~~s--~~pVllGGGV~g~Edlel~~~~Gv~gvLvaTalh~G 216 (229)
T COG1411 168 PDYELLTKVLELS--EHPVLLGGGVGGMEDLELLLGMGVSGVLVATALHEG 216 (229)
T ss_pred CCHHHHHHHHHhc--cCceeecCCcCcHHHHHHHhcCCCceeeehhhhhcC
Confidence 4556666665543 678999999999999988888999999999998764
|
|
| >COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.76 E-value=2.5 Score=38.64 Aligned_cols=40 Identities=30% Similarity=0.427 Sum_probs=32.5
Q ss_pred cHHHHHHHHHhcCCcEEEEe-ecCHHHHHHHHHcCCcEEEEcc
Q 019244 187 SWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSN 228 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~-v~~~~~a~~~~~~G~d~I~v~~ 228 (344)
..+.++.+.+.+ |+++.+ +.++|.|+++.++|||.|++.|
T Consensus 181 ~~e~v~~v~~~~--~LivGGGIrs~E~A~~~a~agAD~IVtG~ 221 (240)
T COG1646 181 PVEMVSRVLSDT--PLIVGGGIRSPEQAREMAEAGADTIVTGT 221 (240)
T ss_pred CHHHHHHhhccc--eEEEcCCcCCHHHHHHHHHcCCCEEEECc
Confidence 345676666654 888877 5899999999999999999965
|
|
| >TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase | Back alignment and domain information |
|---|
Probab=80.59 E-value=22 Score=33.74 Aligned_cols=69 Identities=19% Similarity=0.217 Sum_probs=44.1
Q ss_pred HHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcC-CCEEEEchHHHHH
Q 019244 213 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVYS 289 (344)
Q Consensus 213 a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalG-Ad~V~ig~~~l~~ 289 (344)
++...++|||.|.+- |+ ..+.+.+..+.+.+...+|++...|-.-.......-.+| ...|..|...+++
T Consensus 172 a~aY~eAGAD~ifv~--~~------~~~~~ei~~~~~~~~~p~pv~~~~~~~p~~~~~~l~~lg~~~~v~~g~~~~~a 241 (290)
T TIGR02321 172 GQAYEEAGADAILIH--SR------QKTPDEILAFVKSWPGKVPLVLVPTAYPQLTEADIAALSKVGIVIYGNHAIRA 241 (290)
T ss_pred HHHHHHcCCCEEEec--CC------CCCHHHHHHHHHhcCCCCCeEEecCCCCCCCHHHHHHhcCCcEEEEChHHHHH
Confidence 567889999999883 21 235566777777765567886544321112333455688 7888888777664
|
This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2. |
| >cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain | Back alignment and domain information |
|---|
Probab=80.48 E-value=20 Score=35.36 Aligned_cols=89 Identities=26% Similarity=0.272 Sum_probs=56.4
Q ss_pred CCCcHHHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEcc-CCCC---C----------CCCchh-------hHH
Q 019244 184 RSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSN-HGAR---Q----------LDYVPA-------TIM 242 (344)
Q Consensus 184 ~~~~~~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~-~gG~---~----------~~~g~~-------~~~ 242 (344)
...+.++|+++.+.+ .+-|+++.++|.|+|.+.. |.|. | ..+|-+ ..+
T Consensus 138 ~~mt~~eI~~ii~~f-----------~~AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~e 206 (382)
T cd02931 138 RELTTEEVETFVGKF-----------GESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIE 206 (382)
T ss_pred CcCCHHHHHHHHHHH-----------HHHHHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHH
Confidence 345778888888765 3678999999999999975 4132 1 123322 345
Q ss_pred HHHHHHHHccCCCcEEE--e--------------------cCCCCHH---HHHHHHH-cCCCEEEEch
Q 019244 243 ALEEVVKATQGRIPVFL--D--------------------GGVRRGT---DVFKALA-LGASGIFIGR 284 (344)
Q Consensus 243 ~l~~i~~~~~~~~~via--~--------------------GGIr~g~---dv~kala-lGAd~V~ig~ 284 (344)
.+..|++.++.+.+|.. + ||. +.+ ++++.+. .|+|.+-+..
T Consensus 207 ii~~vr~~~g~~f~v~vri~~~~~~~~~~~~~~~~~~~~~~g~-~~e~~~~~~~~l~~~gvD~l~vs~ 273 (382)
T cd02931 207 IVEEIKARCGEDFPVSLRYSVKSYIKDLRQGALPGEEFQEKGR-DLEEGLKAAKILEEAGYDALDVDA 273 (382)
T ss_pred HHHHHHHhcCCCceEEEEEechhhccccccccccccccccCCC-CHHHHHHHHHHHHHhCCCEEEeCC
Confidence 67777777655555544 1 232 234 4556664 7999998864
|
Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae. |
| >PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane | Back alignment and domain information |
|---|
Probab=80.16 E-value=11 Score=35.23 Aligned_cols=71 Identities=28% Similarity=0.346 Sum_probs=42.9
Q ss_pred HHHHHHHHHcCCcEEEEccCCCC--CCCCchhhHHHHHH----HHHHccCCCcEEEecCCCCHH--HHHHHHHcCCCEEE
Q 019244 210 AEDARIAVQAGAAGIIVSNHGAR--QLDYVPATIMALEE----VVKATQGRIPVFLDGGVRRGT--DVFKALALGASGIF 281 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~~gG~--~~~~g~~~~~~l~~----i~~~~~~~~~via~GGIr~g~--dv~kalalGAd~V~ 281 (344)
.++++.+.+.|+|+|.+.|.+.. ....++.++.++.. +++.+ ++|+=. -=+++.. -+.-|.+.||++|-
T Consensus 32 ~~ea~~l~~~GvDgiiveN~~D~Py~~~~~~etvaaM~~i~~~v~~~~--~~p~GV-nvL~nd~~aalaiA~A~ga~FIR 108 (254)
T PF03437_consen 32 VREAEALEEGGVDGIIVENMGDVPYPKRVGPETVAAMARIAREVRREV--SVPVGV-NVLRNDPKAALAIAAATGADFIR 108 (254)
T ss_pred HHHHHHHHHCCCCEEEEecCCCCCccCCCCHHHHHHHHHHHHHHHHhC--CCCEEe-eeecCCCHHHHHHHHHhCCCEEE
Confidence 47899999999999999997654 22345555554443 33433 344311 1123222 23345668999998
Q ss_pred Ec
Q 019244 282 IG 283 (344)
Q Consensus 282 ig 283 (344)
+.
T Consensus 109 v~ 110 (254)
T PF03437_consen 109 VN 110 (254)
T ss_pred ec
Confidence 66
|
It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions. |
| >PF00563 EAL: EAL domain; InterPro: IPR001633 This domain is found in diverse bacterial signalling proteins | Back alignment and domain information |
|---|
Probab=80.09 E-value=5.8 Score=35.24 Aligned_cols=88 Identities=16% Similarity=0.165 Sum_probs=58.2
Q ss_pred HHHHHHHHhcCCcEEEEee-cCHHHHHHHHHcCCcEEEEccCCCCCCCCch---hhHHHHHHHHHHccCCCcEEEecCCC
Q 019244 189 KDVKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSNHGARQLDYVP---ATIMALEEVVKATQGRIPVFLDGGVR 264 (344)
Q Consensus 189 ~~i~~i~~~~~~PvivK~v-~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~---~~~~~l~~i~~~~~~~~~via~GGIr 264 (344)
+.++.+++ .++.+.+... ........+....+|+|.++..-=+... .. ..+..+..+.+.. .+.||++| |.
T Consensus 138 ~~l~~l~~-~G~~i~ld~~g~~~~~~~~l~~l~~~~ikld~~~~~~~~-~~~~~~~l~~l~~~~~~~--~~~via~g-Ve 212 (236)
T PF00563_consen 138 ENLRRLRS-LGFRIALDDFGSGSSSLEYLASLPPDYIKLDGSLVRDLS-DEEAQSLLQSLINLAKSL--GIKVIAEG-VE 212 (236)
T ss_dssp HHHHHHHH-CT-EEEEEEETSTCGCHHHHHHHCGSEEEEEHHGHTTTT-SHHHHHHHHHHHHHHHHT--T-EEEEEC-E-
T ss_pred HHHHHHHh-cCceeEeeeccCCcchhhhhhhcccccceeecccccccc-hhhHHHHHHHHHHHhhcc--ccccceee-cC
Confidence 45777777 5889998877 3345666788999999999753211122 22 2333444444433 68888865 99
Q ss_pred CHHHHHHHHHcCCCEEE
Q 019244 265 RGTDVFKALALGASGIF 281 (344)
Q Consensus 265 ~g~dv~kalalGAd~V~ 281 (344)
+..+.-.+..+|++.++
T Consensus 213 ~~~~~~~l~~~G~~~~Q 229 (236)
T PF00563_consen 213 SEEQLELLKELGVDYIQ 229 (236)
T ss_dssp SHHHHHHHHHTTESEEE
T ss_pred CHHHHHHHHHcCCCEEE
Confidence 99999999999999875
|
It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function []. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site. It often but not always occurs along with IPR000014 from INTERPRO and IPR000160 from INTERPRO domains that are also found in many signalling proteins.; PDB: 3PJU_A 3PJX_A 3PJW_A 3PJT_B 3KZP_B 3U2E_B 3S83_A 2R6O_B 3N3T_B 3GG1_A .... |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 344 | ||||
| 1gox_A | 370 | Refined Structure Of Spinach Glycolate Oxidase At 2 | 1e-162 | ||
| 1gyl_A | 369 | Involvement Of Tyr24 And Trp108 In Substrate Bindin | 1e-161 | ||
| 1al7_A | 359 | Three-Dimensional Structures Of Glycolate Oxidase W | 1e-160 | ||
| 2nzl_A | 392 | Crystal Structure Of Human Hydroxyacid Oxidase 1 Le | 2e-92 | ||
| 2w0u_A | 370 | Crystal Structure Of Human Glycolate Oxidase In Com | 2e-92 | ||
| 2rdt_A | 387 | Crystal Structure Of Human Glycolate Oxidase (Go) I | 2e-92 | ||
| 2cdh_0 | 226 | Architecture Of The Thermomyces Lanuginosus Fungal | 1e-67 | ||
| 1tb3_A | 352 | Crystal Structure Analysis Of Recombinant Rat Kidne | 6e-66 | ||
| 2a7n_A | 380 | Crystal Structure Of The G81a Mutant Of The Active | 3e-65 | ||
| 1huv_A | 380 | Crystal Structure Of A Soluble Mutant Of The Membra | 8e-65 | ||
| 3sgz_A | 352 | High Resolution Crystal Structure Of Rat Long Chain | 8e-64 | ||
| 1qcw_A | 410 | Flavocytochrome B2, Arg289lys Mutant Length = 410 | 2e-59 | ||
| 1kbj_A | 412 | Crystallographic Study Of The Recombinant Flavin-Bi | 2e-58 | ||
| 1fcb_A | 511 | Molecular Structure Of Flavocytochrome B2 At 2.4 An | 2e-58 | ||
| 1ltd_A | 506 | The 2.6 Angstroms Refined Structure Of The Escheric | 2e-58 | ||
| 1sze_A | 511 | L230a Mutant Flavocytochrome B2 With Benzoylformate | 2e-58 | ||
| 1ldc_A | 511 | X-Ray Structure Of Two Complexes Of The Y143f Flavo | 7e-58 | ||
| 1szf_A | 511 | A198g:l230a Mutant Flavocytochrome B2 With Pyruvate | 7e-58 | ||
| 2oz0_A | 511 | Mechanistic And Structural Studies Of H373q Flavocy | 2e-57 | ||
| 2j6x_A | 374 | The Crystal Structure Of Lactate Oxidase Length = 3 | 4e-38 | ||
| 2du2_A | 374 | Crystal Structure Analysis Of The L-Lactate Oxidase | 6e-38 | ||
| 2nli_A | 368 | Crystal Structure Of The Complex Between L-Lactate | 6e-38 | ||
| 1p0k_A | 349 | Ipp:dmapp Isomerase Type Ii Apo Structure Length = | 6e-04 | ||
| 3ffs_A | 400 | The Crystal Structure Of Cryptosporidium Parvum Ino | 7e-04 |
| >pdb|1GOX|A Chain A, Refined Structure Of Spinach Glycolate Oxidase At 2 Angstroms Resolution Length = 370 | Back alignment and structure |
|
| >pdb|1GYL|A Chain A, Involvement Of Tyr24 And Trp108 In Substrate Binding And Substrate Specificity Of Glycolate Oxidase Length = 369 | Back alignment and structure |
|
| >pdb|1AL7|A Chain A, Three-Dimensional Structures Of Glycolate Oxidase With Bound Active- Site Inhibitors Length = 359 | Back alignment and structure |
|
| >pdb|2NZL|A Chain A, Crystal Structure Of Human Hydroxyacid Oxidase 1 Length = 392 | Back alignment and structure |
|
| >pdb|2W0U|A Chain A, Crystal Structure Of Human Glycolate Oxidase In Complex With The Inhibitor 5-[(4-Chlorophenyl)sulfanyl]- 1,2,3-Thiadiazole-4-Carboxylate. Length = 370 | Back alignment and structure |
|
| >pdb|2RDT|A Chain A, Crystal Structure Of Human Glycolate Oxidase (Go) In Complex With Cdst Length = 387 | Back alignment and structure |
|
| >pdb|2CDH|0 Chain 0, Architecture Of The Thermomyces Lanuginosus Fungal Fatty Acid Synthase At 5 Angstrom Resolution. Length = 226 | Back alignment and structure |
|
| >pdb|1TB3|A Chain A, Crystal Structure Analysis Of Recombinant Rat Kidney Long- Chain Hydroxy Acid Oxidase Length = 352 | Back alignment and structure |
|
| >pdb|2A7N|A Chain A, Crystal Structure Of The G81a Mutant Of The Active Chimera Of (S)- Mandelate Dehydrogenase Length = 380 | Back alignment and structure |
|
| >pdb|1HUV|A Chain A, Crystal Structure Of A Soluble Mutant Of The Membrane-Associated (S)- Mandelate Dehydrogenase From Pseudomonas Putida At 2.15a Resolution Length = 380 | Back alignment and structure |
|
| >pdb|3SGZ|A Chain A, High Resolution Crystal Structure Of Rat Long Chain Hydroxy Acid Oxidase In Complex With The Inhibitor 4-Carboxy-5-[(4-Chiorophenyl) Sulfanyl]-1, 2, 3-Thiadiazole. Length = 352 | Back alignment and structure |
|
| >pdb|1QCW|A Chain A, Flavocytochrome B2, Arg289lys Mutant Length = 410 | Back alignment and structure |
|
| >pdb|1KBJ|A Chain A, Crystallographic Study Of The Recombinant Flavin-Binding Domain Of Baker's Yeast Flavocytochrome B2: Comparison With The Intact Wild- Type Enzyme Length = 412 | Back alignment and structure |
|
| >pdb|1FCB|A Chain A, Molecular Structure Of Flavocytochrome B2 At 2.4 Angstroms Resolution Length = 511 | Back alignment and structure |
|
| >pdb|1LTD|A Chain A, The 2.6 Angstroms Refined Structure Of The Escherichia Coli Recombinant Saccharomyces Cerevisiae Flavocytochrome B2-Sulphite Complex Length = 506 | Back alignment and structure |
|
| >pdb|1SZE|A Chain A, L230a Mutant Flavocytochrome B2 With Benzoylformate Length = 511 | Back alignment and structure |
|
| >pdb|1LDC|A Chain A, X-Ray Structure Of Two Complexes Of The Y143f Flavocytochrome B2 Mutant Crystallized In The Presence Of Lactate Or Phenyl-Lactate Length = 511 | Back alignment and structure |
|
| >pdb|1SZF|A Chain A, A198g:l230a Mutant Flavocytochrome B2 With Pyruvate Bound Length = 511 | Back alignment and structure |
|
| >pdb|2OZ0|A Chain A, Mechanistic And Structural Studies Of H373q Flavocytochrome B2: Effects Of Mutating The Active Site Base Length = 511 | Back alignment and structure |
|
| >pdb|2J6X|A Chain A, The Crystal Structure Of Lactate Oxidase Length = 374 | Back alignment and structure |
|
| >pdb|2DU2|A Chain A, Crystal Structure Analysis Of The L-Lactate Oxidase Length = 374 | Back alignment and structure |
|
| >pdb|2NLI|A Chain A, Crystal Structure Of The Complex Between L-Lactate Oxidase And A Substrate Analogue At 1.59 Angstrom Resolution Length = 368 | Back alignment and structure |
|
| >pdb|1P0K|A Chain A, Ipp:dmapp Isomerase Type Ii Apo Structure Length = 349 | Back alignment and structure |
|
| >pdb|3FFS|A Chain A, The Crystal Structure Of Cryptosporidium Parvum Inosine-5'- Monophosphate Dehydrogenase Length = 400 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0 Length = 370 | Back alignment and structure |
|---|
Score = 586 bits (1512), Expect = 0.0
Identities = 301/368 (81%), Positives = 322/368 (87%), Gaps = 26/368 (7%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITNV EYEAIAK+KLPKMV+DYYASGAEDQWTL ENRNAFSRILFRPRILIDV+ IDM
Sbjct: 3 EITNVNEYEAIAKQKLPKMVYDYYASGAEDQWTLAENRNAFSRILFRPRILIDVTNIDMT 62
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM------------------ 104
TT+LGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM
Sbjct: 63 TTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 122
Query: 105 --------VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 156
VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRF LPPFLTLK
Sbjct: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLK 182
Query: 157 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIA 216
NF+G+DLGKMD+ANDSGL++YVAGQIDRSLSWKDV WLQTIT LPILVKGV+TAEDAR+A
Sbjct: 183 NFEGIDLGKMDKANDSGLSSYVAGQIDRSLSWKDVAWLQTITSLPILVKGVITAEDARLA 242
Query: 217 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 276
VQ GAAGIIVSNHGARQLDYVPATIMALEEVVKA QGRIPVFLDGGVRRGTDVFKALALG
Sbjct: 243 VQHGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFLDGGVRRGTDVFKALALG 302
Query: 277 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDAS 336
A+G+FIGRPVV+SLAAEGE GV++VL+M+R+EFEL MALSGCRSLKEI+R HI +WD
Sbjct: 303 AAGVFIGRPVVFSLAAEGEAGVKKVLQMMRDEFELTMALSGCRSLKEISRSHIAADWDGP 362
Query: 337 LPRPVPRL 344
R V RL
Sbjct: 363 SSRAVARL 370
|
| >2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A* Length = 392 | Back alignment and structure |
|---|
Score = 548 bits (1415), Expect = 0.0
Identities = 189/374 (50%), Positives = 251/374 (67%), Gaps = 35/374 (9%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
+ + + +YE AK LPK ++DYY SGA D+ TL +N AFSR PR+L +V++ D
Sbjct: 24 LPRLICINDYEQHAKSVLPKSIYDYYRSGANDEETLADNIAAFSRWKLYPRMLRNVAETD 83
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM---------------- 104
++T+VLG ++SMPI + TAMQ+MAH +GE AT RA + GT M
Sbjct: 84 LSTSVLGQRVSMPICVGATAMQRMAHVDGELATVRACQSLGTGMMLSSWATSSIEEVAEA 143
Query: 105 -----------VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFL 153
+YKDR V +LVR+AE+ G+KAI +TVDTP LG R D++NRF LPP L
Sbjct: 144 GPEALRWLQLYIYKDREVTKKLVRQAEKMGYKAIFVTVDTPYLGNRLDDVRNRFKLPPQL 203
Query: 154 TLKNFQGLDLGKMDEAN---DSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTA 210
+KNF+ L E N DSGLAAYVA ID S+SW+D+KWL+ +T LPI+ KG+L
Sbjct: 204 RMKNFETSTLSFSPEENFGDDSGLAAYVAKAIDPSISWEDIKWLRRLTSLPIVAKGILRG 263
Query: 211 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVF 270
+DAR AV+ G GI+VSNHGARQLD VPATI L E+V+A +G++ VFLDGGVR+GTDV
Sbjct: 264 DDAREAVKHGLNGILVSNHGARQLDGVPATIDVLPEIVEAVEGKVEVFLDGGVRKGTDVL 323
Query: 271 KALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIV 330
KALALGA +F+GRP+V+ LA +GEKGV+ VLE+L+EEF LAMALSGC+++K I + +
Sbjct: 324 KALALGAKAVFVGRPIVWGLAFQGEKGVQDVLEILKEEFRLAMALSGCQNVKVIDKTLVR 383
Query: 331 TEWDASLPRPVPRL 344
P V ++
Sbjct: 384 KN-----PLAVSKI 392
|
| >1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A* Length = 380 | Back alignment and structure |
|---|
Score = 532 bits (1372), Expect = 0.0
Identities = 141/366 (38%), Positives = 211/366 (57%), Gaps = 30/366 (8%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
+ NV +Y +A+++LPKMV+DY GAED++ ++ NR+ F + F+P+ L+DVS+ +
Sbjct: 4 NLFNVEDYRKLAQKRLPKMVYDYLEGGAEDEYGVKHNRDVFQQWRFKPKRLVDVSRRSLQ 63
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMV----------------- 105
VLG + SMP++I PT + P+G+ A ARAA+ AG V
Sbjct: 64 AEVLGKRQSMPLLIGPTGLNGALWPKGDLALARAATKAGIPFVLSTASNMSIEDLARQCD 123
Query: 106 -------Y-KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN 157
Y R + +V +A G+ + LT D G RE D+ NRF +PPFLTLKN
Sbjct: 124 GDLWFQLYVIHREIAQGMVLKALHTGYTTLVLTTDVAVNGYRERDLHNRFKIPPFLTLKN 183
Query: 158 FQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAV 217
F+G+DLGKMD+AN AA ++ Q+D S +W+ ++WL+ + +LVKG+L+AEDA +
Sbjct: 184 FEGIDLGKMDKANLEMQAALMSRQMDASFNWEALRWLRDLWPHKLLVKGLLSAEDADRCI 243
Query: 218 QAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGA 277
GA G+I+SNHG RQLD + + L + V PV +D G RRG+D+ KALALGA
Sbjct: 244 AEGADGVILSNHGGRQLDCAISPMEVLAQSVAK--TGKPVLIDSGFRRGSDIVKALALGA 301
Query: 278 SGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDASL 337
+ +GR +Y LAA GE GV VL +L+ + + +A GC + ++ D++ E +
Sbjct: 302 EAVLLGRATLYGLAARGETGVDEVLTLLKADIDRTLAQIGCPDITSLSPDYLQNE---GV 358
Query: 338 PRPVPR 343
P
Sbjct: 359 TNTAPV 364
|
| >3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A* Length = 352 | Back alignment and structure |
|---|
Score = 529 bits (1366), Expect = 0.0
Identities = 146/356 (41%), Positives = 204/356 (57%), Gaps = 34/356 (9%)
Query: 4 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNT 63
+ + +++A A+++L K +D+ A+D T EN AF RI RPR L D+SK+D T
Sbjct: 2 LVCLADFKAHAQKQLSKTSWDFIEGEADDGITYSENIAAFKRIRLRPRYLRDMSKVDTRT 61
Query: 64 TVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM------------------- 104
T+ G +IS PI I+PTA +A P+GE +TARAA A
Sbjct: 62 TIQGQEISAPICISPTAFHSIAWPDGEKSTARAAQEANICYVISSYASYSLEDIVAAAPE 121
Query: 105 --------VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 156
+ D + Q+V+RAE GFKA+ +T+DTP LG R D +N+ L +
Sbjct: 122 GFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVLGNRRRDKRNQLNLEANILKA 181
Query: 157 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIA 216
+ L + + S W D+ LQ+IT+LPI++KG+LT EDA +A
Sbjct: 182 ALRALK-------EEKPTQSVPVLFPKASFCWNDLSLLQSITRLPIILKGILTKEDAELA 234
Query: 217 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 276
++ GI+VSNHG RQLD V A+I AL EVV A +G+I V++DGGVR GTDV KALALG
Sbjct: 235 MKHNVQGIVVSNHGGRQLDEVSASIDALREVVAAVKGKIEVYMDGGVRTGTDVLKALALG 294
Query: 277 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTE 332
A IF+GRP+++ LA +GE GV+ VL++L E M LSGC+S+ EI+ D I
Sbjct: 295 ARCIFLGRPILWGLACKGEDGVKEVLDILTAELHRCMTLSGCQSVAEISPDLIQFS 350
|
| >2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A* Length = 368 | Back alignment and structure |
|---|
Score = 527 bits (1360), Expect = 0.0
Identities = 110/357 (30%), Positives = 174/357 (48%), Gaps = 33/357 (9%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
++ N + E A + +P F+Y A + D+WT + N A+ L PR+ DV D +
Sbjct: 12 DVVNTYDLEEEASKVVPHGGFNYIAGASGDEWTKRANDRAWKHKLLYPRLAQDVEAPDTS 71
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM------------------ 104
T +LG KI P ++AP A +AH E TARA S GTIM
Sbjct: 72 TEILGHKIKAPFIMAPIAAHGLAHTTKEAGTARAVSEFGTIMSISAYSGATFEEISEGLN 131
Query: 105 ---------VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTL 155
+ KD ++ A+ G AI LT D+ G R+ D+KN+F P + +
Sbjct: 132 GGPRWFQIYMAKDDQQNRDILDEAKSDGATAIILTADSTVSGNRDRDVKNKFVYPFGMPI 191
Query: 156 KNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARI 215
+ + + G + +S +D++ + + LP+ VKG+ EDA +
Sbjct: 192 VQR------YLRGTAEGMSLNNIYGASKQKISPRDIEEIAGHSGLPVFVKGIQHPEDADM 245
Query: 216 AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL 275
A++ GA+GI VSNHGARQL P + L + + R+P+ D GVRRG V KALA
Sbjct: 246 AIKRGASGIWVSNHGARQLYEAPGSFDTLPAIAERVNKRVPIVFDSGVRRGEHVAKALAS 305
Query: 276 GASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTE 332
GA + +GRPV++ LA G +G VL+ +++ M L+G ++++++ +
Sbjct: 306 GADVVALGRPVLFGLALGGWQGAYSVLDYFQKDLTRVMQLTGSQNVEDLKGLDLFDN 362
|
| >1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A* Length = 511 | Back alignment and structure |
|---|
Score = 514 bits (1326), Expect = 0.0
Identities = 130/380 (34%), Positives = 202/380 (53%), Gaps = 43/380 (11%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
+ I N+ ++E +A + L K + YY+SGA D+ T +EN NA+ RI F+P+IL+DV K+D
Sbjct: 119 LDNIINLYDFEYLASQTLTKQAWAYYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKVD 178
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHP---EGEYATARAASAAGTIM------------- 104
++T +LG + +P ++ TA+ K+ +P E + A
Sbjct: 179 ISTDMLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEI 238
Query: 105 ----------------VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFT 148
V DR + LV+ E+ G KA+ +TVD P LG+RE D+K +F+
Sbjct: 239 IEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFS 298
Query: 149 LPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVL 208
+ + G + ++ ID SL+WKD++ L+ TKLPI++KGV
Sbjct: 299 NTKAGPKAMKKT------NVEESQGASRALSKFIDPSLTWKDIEELKKKTKLPIVIKGVQ 352
Query: 209 TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ-----GRIPVFLDGGV 263
ED A + G +G+++SNHG RQLD+ A I L E + + ++ VF+DGGV
Sbjct: 353 RTEDVIKAAEIGVSGVVLSNHGGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVFVDGGV 412
Query: 264 RRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKE 323
RRGTDV KAL LGA G+ +GRP +Y+ + G GV + +E+LR+E E++M L G S+ E
Sbjct: 413 RRGTDVLKALCLGAKGVGLGRPFLYANSCYGRNGVEKAIEILRDEIEMSMRLLGVTSIAE 472
Query: 324 ITRDHIVTEWDASLPRPVPR 343
+ D + + VP
Sbjct: 473 LKPDLLDLSTLKARTVGVPN 492
|
| >3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans} Length = 365 | Back alignment and structure |
|---|
Score = 288 bits (738), Expect = 6e-96
Identities = 58/356 (16%), Positives = 119/356 (33%), Gaps = 51/356 (14%)
Query: 4 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRIL--IDVSKIDM 61
+ ++ + + + + D+ A D + N+F I L D+++ID+
Sbjct: 21 MASMTGGQQMGRGSMTNRKDDHI-KYALDY---RSPYNSFDDIELIHHSLPDYDLAEIDL 76
Query: 62 NTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM-------VYKDRNVVAQ 114
+T G P I E A+ A G + K+ + +
Sbjct: 77 STHFAGQDFDFPFYINAMTGGSQKGKEVNEKLAQVADTCGLLFVTGSYSTALKNPDDTSY 136
Query: 115 LVRRAERAGFKAIALTVDTPRLGRREA-DIKNRFTLPPFLTLKNFQGLDLGKMDEANDSG 173
V+++ A + +D P +A L + L + G+ +
Sbjct: 137 QVKKSRPHLLLATNIGLDKPYQAGLQAVRDLQPLFLQVHINLMQELLMPEGERE------ 190
Query: 174 LAAYVAGQIDRSLSWKD-VKWLQTITKLPILVKGV---LTAEDARIAVQAGAAGIIVSNH 229
SWK + +LP ++K V + + + A+ G + +S
Sbjct: 191 -----------FRSWKKHLSDYAKKLQLPFILKEVGFGMDVKTIQTAIDLGVKTVDISGR 239
Query: 230 GARQLDYVPA---------------TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 274
G Y+ T L + ++ + GG+R D+ KAL
Sbjct: 240 GGTSFAYIENRRGGNRSYLNQWGQTTAQVLLNA-QPLMDKVEILASGGIRHPLDIIKALV 298
Query: 275 LGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIV 330
LGA + + R ++ + V ++ +E+ L M C+++ E+ +
Sbjct: 299 LGAKAVGLSRTMLELVEQHSVHEVIAIVNGWKEDLRLIMCALNCQTIAELRNVDYL 354
|
| >1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A* Length = 349 | Back alignment and structure |
|---|
Score = 258 bits (661), Expect = 2e-84
Identities = 68/332 (20%), Positives = 129/332 (38%), Gaps = 49/332 (14%)
Query: 35 TLQENRNAFSRILFRPRIL--IDVSKIDMNTTVLGFKISMPIMIAP-TAMQKMAHPEGEY 91
Q+ I F L + + ++D++T + S PI I T E
Sbjct: 17 IGQKRETGLDDITFVHVSLPDLALEQVDISTKIGELSSSSPIFINAMTGGGGKLTYEINK 76
Query: 92 ATARAASAAGTIMV-------YKDRNVVA--QLVRRAERAGFKAIALTVDTPRLGRREA- 141
+ ARAAS AG + KD + ++VR+ G L + +EA
Sbjct: 77 SLARAASQAGIPLAVGSQMSALKDPSERLSYEIVRKENPNGLIFANLGSEATAAQAKEAV 136
Query: 142 DIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLP 201
++ L + L + E G S + K ++ + + +P
Sbjct: 137 EMIGANALQ----------IHLNVIQEIVMPE------GDRSFSGALKRIEQICSRVSVP 180
Query: 202 ILVKGV---LTAEDARIAVQAGAAGIIVSNHGARQLDYVP----------------ATIM 242
++VK V ++ A +AGAA + + +G + +T
Sbjct: 181 VIVKEVGFGMSKASAGKLYEAGAAAVDIGGYGGTNFSKIENLRRQRQISFFNSWGISTAA 240
Query: 243 ALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVL 302
+L E+ + GG++ DV KA+ALGAS + + +L GE+G+ +
Sbjct: 241 SLAEIRSE-FPASTMIASGGLQDALDVAKAIALGASCTGMAGHFLKALTDSGEEGLLEEI 299
Query: 303 EMLREEFELAMALSGCRSLKEITRDHIVTEWD 334
+++ EE +L M + G R++ ++ + +V + +
Sbjct: 300 QLILEELKLIMTVLGARTIADLQKAPLVIKGE 331
|
| >3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A* Length = 368 | Back alignment and structure |
|---|
Score = 225 bits (576), Expect = 1e-71
Identities = 56/345 (16%), Positives = 114/345 (33%), Gaps = 50/345 (14%)
Query: 24 DYYASGAEDQWTLQENRNAFSRILFRPRIL--IDVSKIDMNTTVLGFKISMPIMIAP-TA 80
++ A + + + ++ + I S+I+ T +IS+P+M+ T
Sbjct: 10 EHVEIAAFENVDGLSSSTFLNDVILVHQGFPGISFSEINTKTKFFRKEISVPVMVTGMTG 69
Query: 81 MQKMAHPEGEYATARAASAAGTIMV-------YKDRNVVA--QLVRRAERAGFKAIALTV 131
+ A A G M + +VR+ L +
Sbjct: 70 GRNELG-RINKIIAEVAEKFGIPMGVGSQRVAIEKAEARESFAIVRKVAPTIPIIANLGM 128
Query: 132 DTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDV 191
G + ++ + + + + + + + +
Sbjct: 129 PQLVKGYGLKEFQDAIQMIEADAIA---------VHLNPAQEVFQPEGEPEYQIYALEKL 179
Query: 192 KWLQTITKLPILVKGV---LTAEDARIAVQAGAAGIIVSNHG------------------ 230
+ + +PI+VK ++ E A++ G S G
Sbjct: 180 RDISKELSVPIIVKESGNGISMETAKLLYSYGIKNFDTSGQGGTNWIAIEMIRDIRRGNW 239
Query: 231 -----ARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 285
LD+ T ++ EV + + GG+R G D KA+ALGA + P
Sbjct: 240 KAESAKNFLDWGVPTAASIMEVRYSVPD-SFLVGSGGIRSGLDAAKAIALGADIAGMALP 298
Query: 286 VVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIV 330
V+ S A EG++ + + + E + AM L+G + + + + IV
Sbjct: 299 VLKS-AIEGKESLEQFFRKIIFELKAAMMLTGSKDVDALKKTSIV 342
|
| >1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A* Length = 332 | Back alignment and structure |
|---|
Score = 178 bits (454), Expect = 9e-54
Identities = 70/326 (21%), Positives = 109/326 (33%), Gaps = 40/326 (12%)
Query: 29 GAEDQWTLQENRNAFSRILFRPRIL--IDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAH 86
E + Q+ R + L + +S++D+ T LG + P +I +
Sbjct: 14 CLEGEVAYQKTTTGLEGFRLRYQALAGLALSEVDLTTPFLGKTLKAPFLIGAMTGGEENG 73
Query: 87 PEGEYATARAASAAGTIMVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNR 146
A A AA A G M+ ++ L R F+ + + R
Sbjct: 74 ERINLALAEAAEALGVGMMLGSGRIL--LERPEALRSFRVRKVAPKALLIANLGLAQLRR 131
Query: 147 FTLPPFLTLKNFQGLD-----LGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLP 201
+ L L D + + EA G + + P
Sbjct: 132 YGRDDLLRLVEMLEADALAFHVNPLQEAVQRGDTDFR--------GLVERLAELLPLPFP 183
Query: 202 ILVKGV---LTAEDARIAVQAGAAGIIVSNHGARQLDYVPA------------------T 240
++VK V L+ E A A + V+ G V T
Sbjct: 184 VMVKEVGHGLSREAALALRDLPLAAVDVAGAGGTSWARVEEWVRFGEVRHPELCEIGIPT 243
Query: 241 IMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRR 300
A+ EV + +P+ GGV GTD KALALGA + + RP++ A EG + V
Sbjct: 244 ARAILEV-REVLPHLPLVASGGVYTGTDGAKALALGADLLAVARPLLR-PALEGAERVAA 301
Query: 301 VLEMLREEFELAMALSGCRSLKEITR 326
+ EE A+ G R+ KE
Sbjct: 302 WIGDYLEELRTALFAIGARNPKEARG 327
|
| >2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032} Length = 393 | Back alignment and structure |
|---|
Score = 53.3 bits (128), Expect = 4e-08
Identities = 50/264 (18%), Positives = 86/264 (32%), Gaps = 37/264 (14%)
Query: 54 IDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAA-----GTIMVYKD 108
+D + +K +P M P +A PE + G + D
Sbjct: 50 RSSKDVDTTWHIDAYKFDLPFMNHP--SDALASPEFVIEMGKQGGLGVINAEGLWGRHAD 107
Query: 109 RNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDE 168
+ V A G +A A A + +++ + ++
Sbjct: 108 LDEAIAKVIAAYEEGDQAAATRTLQELHA---APLDTELLSERIAQVRDSGEIVAVRVSP 164
Query: 169 ANDSGLA-AYVAGQID---------------RSLSWKDVKWLQTITKLPILVKGVLTAED 212
N +A + D ++K +P++ GV
Sbjct: 165 QNVREIAPIVIKAGADLLVIQGTLISAEHVNTGGEALNLKEFIGSLDVPVIAGGVNDYTT 224
Query: 213 ARIAVQAGAAGIIV-----SNHGARQLDYVPAT-IM----ALEEVVKATQGR-IPVFLDG 261
A ++ GA GIIV +N A ++ AT I A + + T GR + + DG
Sbjct: 225 ALHMMRTGAVGIIVGGGENTNSLALGMEVSMATAIADVAAARRDYLDETGGRYVHIIADG 284
Query: 262 GVRRGTDVFKALALGASGIFIGRP 285
+ DV KA+A GA + +G P
Sbjct: 285 SIENSGDVVKAIACGADAVVLGSP 308
|
| >3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} Length = 232 | Back alignment and structure |
|---|
Score = 48.5 bits (115), Expect = 9e-07
Identities = 32/200 (16%), Positives = 57/200 (28%), Gaps = 21/200 (10%)
Query: 84 MAHPEGEYATARAASAAGTIMVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADI 143
+ PE A A AA AG A VR + V P +G + D+
Sbjct: 32 LDKPEIVAAMALAAEQAG-----------AVAVRIEGIDNLRMTRSLVSVPIIGIIKRDL 80
Query: 144 KNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPIL 203
L + L + A R ++ + + +
Sbjct: 81 DESPVRITP-FLDDVDALAQAGAA------IIAVDGTARQRPVAVEA-LLARIHHHHLLT 132
Query: 204 VKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 263
+ + +D + GA I + G D + L + + V +G
Sbjct: 133 MADCSSVDDGLACQRLGADIIGTTMSGYTTPDTPEEPDLPLVKALHDA--GCRVIAEGRY 190
Query: 264 RRGTDVFKALALGASGIFIG 283
+A+ GA + +G
Sbjct: 191 NSPALAAEAIRYGAWAVTVG 210
|
| >3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum} Length = 400 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 1e-06
Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 21/107 (19%)
Query: 191 VKWLQTITKLPILVKGVLTAEDARIAVQAGAAGI-------------IVSNHGARQLDYV 237
+K +++ + ++V V+T E + ++ GA GI IV+ G Q
Sbjct: 176 LKEIKSKMNIDVIVGNVVTEEATKELIENGADGIKVGIGPGSICTTRIVAGVGVPQ---- 231
Query: 238 PATIMALEEVVKATQGR-IPVFLDGGVRRGTDVFKALALGASGIFIG 283
I A+E+ IP+ DGG+R D+ KALA+GAS + IG
Sbjct: 232 ---ITAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMIG 275
|
| >3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum} Length = 361 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 3e-06
Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 21/107 (19%)
Query: 191 VKWLQTITKLPILVKGVLTAEDARIAVQAGAAGI-------------IVSNHGARQLDYV 237
+K +++ + ++V V+T E + ++ GA GI IV+ G Q
Sbjct: 137 LKEIKSKMNIDVIVGNVVTEEATKELIENGADGIKVGIGPGSICTTRIVAGVGVPQ---- 192
Query: 238 PATIMALEEVVKATQGR-IPVFLDGGVRRGTDVFKALALGASGIFIG 283
I A+E+ IP+ DGG+R D+ KALA+GAS + IG
Sbjct: 193 ---ITAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMIG 236
|
| >1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* Length = 514 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 1e-05
Identities = 31/119 (26%), Positives = 49/119 (41%), Gaps = 28/119 (23%)
Query: 180 GQIDRSLSWKDVKWL-QTITKLPILVKGVLTAEDARIAVQAGAAGI-------------I 225
QI V ++ Q L ++ V+TA A+ + AG G+
Sbjct: 282 YQIAM------VHYIKQKYPHLQVIGGNVVTAAQAKNLIDAGVDGLRVGMGCGSICITQE 335
Query: 226 VSNHGARQLDYVPATIMALEEVVKATQGR-IPVFLDGGVRRGTDVFKALALGASGIFIG 283
V G Q A+ +V + + +P+ DGG++ V KALALGAS + +G
Sbjct: 336 VMACGRPQ-------GTAVYKVAEYARRFGVPIIADGGIQTVGHVVKALALGASTVMMG 387
|
| >1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1 Length = 404 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 2e-05
Identities = 29/108 (26%), Positives = 45/108 (41%), Gaps = 22/108 (20%)
Query: 191 VKWL-QTITKLPILVKGVLTAEDARIAVQAGAAGI-------------IVSNHGARQLDY 236
+K + L ++ ++T E A + GA + IV+ G Q
Sbjct: 185 IKKIKTKYPNLDLIAGNIVTKEAALDLISVGADCLKVGIGPGSICTTRIVAGVGVPQ--- 241
Query: 237 VPATIMALEEVVKATQGR-IPVFLDGGVRRGTDVFKALALGASGIFIG 283
I A+ +V +A I + DGG+R DV KA+A GA + IG
Sbjct: 242 ----ITAICDVYEACNNTNICIIADGGIRFSGDVVKAIAAGADSVMIG 285
|
| >1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5 Length = 234 | Back alignment and structure |
|---|
Score = 43.8 bits (103), Expect = 3e-05
Identities = 16/93 (17%), Positives = 36/93 (38%), Gaps = 1/93 (1%)
Query: 191 VKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKA 250
++ ++ +L+ + T ++ +A QAG + + G + +
Sbjct: 124 IRQVKEKYPNQLLMADISTFDEGLVAHQAGIDFVGTTLSGYTPYS-RQEAGPDVALIEAL 182
Query: 251 TQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 283
+ I V +G + + K LG +GI +G
Sbjct: 183 CKAGIAVIAEGKIHSPEEAKKINDLGVAGIVVG 215
|
| >1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A* Length = 311 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 3e-05
Identities = 34/176 (19%), Positives = 53/176 (30%), Gaps = 41/176 (23%)
Query: 181 QIDRSLSWKDVKWLQTITKLPILVKGVLT--------AEDARIAVQAGAAGIIVSNHGA- 231
D + K +K + T P+ VK L A I Q + N
Sbjct: 140 AYDFEATEKLLKEVFTFFTKPLGVK--LPPYFDLVHFDIMAEILNQFPLTYVNSVNSIGN 197
Query: 232 --------RQLDYVPATIM-----------ALE---EVVKATQGRIPVFLDGGVRRGTDV 269
+ P AL + I + GG+ G D
Sbjct: 198 GLFIDPEAESVVIKPKDGFGGIGGAYIKPTALANVRAFYTRLKPEIQIIGTGGIETGQDA 257
Query: 270 FKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEIT 325
F+ L GA+ + IG + EG R++ +E E M G +S+ +
Sbjct: 258 FEHLLCGATMLQIGTALHK----EGPAIFDRII----KELEEIMNQKGYQSIADFH 305
|
| >4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4fez_A Length = 366 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 3e-05
Identities = 31/108 (28%), Positives = 46/108 (42%), Gaps = 22/108 (20%)
Query: 191 VKWL-QTITKLPILVKGVLTAEDARIAVQAGAAGI-------------IVSNHGARQLDY 236
++ L I+ V TAE AR ++AG + + IV+ G Q
Sbjct: 140 IRETRAAYPHLEIIGGNVATAEGARALIEAGVSAVKVGIGPGSICTTRIVTGVGVPQ--- 196
Query: 237 VPATIMALEEVVKATQGR-IPVFLDGGVRRGTDVFKALALGASGIFIG 283
I A+ + IPV DGG+R D+ KA+A GAS + +G
Sbjct: 197 ----ITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMVG 240
|
| >1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 Length = 494 | Back alignment and structure |
|---|
Score = 44.0 bits (105), Expect = 5e-05
Identities = 26/108 (24%), Positives = 46/108 (42%), Gaps = 22/108 (20%)
Query: 191 VKWL-QTITKLPILVKGVLTAEDARIAVQAGAAGI-------------IVSNHGARQLDY 236
++ + LP++ V T E ++AGA + +V+ G Q
Sbjct: 269 LEMIKADYPDLPVVAGNVATPEGTEALIKAGADAVKVGVGPGSICTTRVVAGVGVPQ--- 325
Query: 237 VPATIMALEEVVKATQGR-IPVFLDGGVRRGTDVFKALALGASGIFIG 283
+ A+ E + + +P+ DGG+R D+ KALA GA + +G
Sbjct: 326 ----LTAVMECSEVARKYDVPIIADGGIRYSGDIVKALAAGAESVMVG 369
|
| >1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* Length = 503 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 5e-05
Identities = 27/121 (22%), Positives = 41/121 (33%), Gaps = 21/121 (17%)
Query: 179 AGQIDRSLSWKDVKWLQTI--TKLPILVKGVLTAEDARIAVQAGAAGI------------ 224
Q + W++ K+ + ++ E R AGA I
Sbjct: 268 EWQKIT------IGWIREKYGDKVKVGAGNIVDGEGFRYLADAGADFIKIGIGGGSICIT 321
Query: 225 -IVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 283
G Q V + + + T IPV DGG+ + ALA+GA I +G
Sbjct: 322 REQKGIGRGQATAVIDVVAERNKYFEETGIYIPVCSDGGIVYDYHMTLALAMGADFIMLG 381
Query: 284 R 284
R
Sbjct: 382 R 382
|
| >3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} Length = 229 | Back alignment and structure |
|---|
Score = 42.7 bits (100), Expect = 5e-05
Identities = 37/201 (18%), Positives = 59/201 (29%), Gaps = 23/201 (11%)
Query: 84 MAHPEGEYATARAASAAGTIMVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADI 143
M PE A A+AA++AG A VR + + + P +G + D+
Sbjct: 32 MDKPEIVAAMAQAAASAG-----------AVAVRIEGIENLRTVRPHLSVPIIGIIKRDL 80
Query: 144 KNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPIL 203
P +T L +D +G RS L I +L
Sbjct: 81 TGS---PVRITP------YLQDVDALAQAGADIIAFDASFRSRPVDIDSLLTRIRLHGLL 131
Query: 204 VKG-VLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 262
T + Q G I + G +A+ + V +G
Sbjct: 132 AMADCSTVNEGISCHQKGIEFIGTTLSGYTGPITPVEPDLAMVTQLSHAG--CRVIAEGR 189
Query: 263 VRRGTDVFKALALGASGIFIG 283
A+ GA + +G
Sbjct: 190 YNTPALAANAIEHGAWAVTVG 210
|
| >3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* Length = 511 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 6e-05
Identities = 29/108 (26%), Positives = 46/108 (42%), Gaps = 22/108 (20%)
Query: 191 VKWL-QTITKLPILVKGVLTAEDARIAVQAGAAGI-------------IVSNHGARQLDY 236
VK + L I+ V TAE + ++AGA + +V+ G Q
Sbjct: 288 VKEVRAKYPSLNIIAGNVATAEATKALIEAGANVVKVGIGPGSICTTRVVAGVGVPQ--- 344
Query: 237 VPATIMALEEVVKATQGR-IPVFLDGGVRRGTDVFKALALGASGIFIG 283
+ A+ + + IPV DGG++ D+ KALA GA + +G
Sbjct: 345 ----LTAVYDCATEARKHGIPVIADGGIKYSGDMVKALAAGAHVVMLG 388
|
| >1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A* Length = 336 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 7e-05
Identities = 50/261 (19%), Positives = 88/261 (33%), Gaps = 57/261 (21%)
Query: 43 FSRILFRPR--ILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAA 100
+ I P I+ S+ D T+ K +P++ A MQ + + A +
Sbjct: 16 YEDIQLIPAKCIVNSRSECDTTVTLGKHKFKLPVVPA--NMQTI----IDERIATYLAEN 69
Query: 101 G--TIMVYKDRNVVAQLVRRA-ERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN 157
IM +R R +I++ V + + P ++T+
Sbjct: 70 NYFYIMHRFQPEKRISFIRDMQSRGLIASISVGVKEDEYEFVQQ-LAAEHLTPEYITI-- 126
Query: 158 FQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWL-QTITKLPILVKGVLTAEDARIA 216
D A+ + I+ ++ + + + + ++ V T E R
Sbjct: 127 ---------DIAH-----GHSNAVINM------IQHIKKHLPESFVIAGNVGTPEAVREL 166
Query: 217 VQAGA----AGI---------IVSNHGARQLDYVPAT-IMALEEVVKATQGRIPVFLDGG 262
AGA GI I + G + AL KA P+ DGG
Sbjct: 167 ENAGADATKVGIGPGKVCITKIKTGFG------TGGWQLAALRWCAKAA--SKPIIADGG 218
Query: 263 VRRGTDVFKALALGASGIFIG 283
+R DV K++ GA+ + IG
Sbjct: 219 IRTNGDVAKSIRFGATMVMIG 239
|
| >1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5 Length = 223 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 7e-05
Identities = 41/208 (19%), Positives = 69/208 (33%), Gaps = 30/208 (14%)
Query: 84 MAHPEGEYATARAASAAGTIMVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADI 143
+ A AA G A +R + AI TVD P +G +
Sbjct: 19 LHSSFIMSKMALAAYEGG-----------AVGIRANTKEDILAIKETVDLPVIG----IV 63
Query: 144 KNRFTL-PPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKD--VKWLQTITKL 200
K + F+T + + A A R D V +++T
Sbjct: 64 KRDYDHSDVFIT----ATSKEVDELIESQCEVIALDATLQQRPKETLDELVSYIRTHAPN 119
Query: 201 PILVKGVLTAEDARIAVQAGAAGIIVSNHG-----ARQLDYVPATIMALEEVVKATQGRI 255
++ + T E+A+ A + G I + HG QL Y L++V+++
Sbjct: 120 VEIMADIATVEEAKNAARLGFDYIGTTLHGYTSYTQGQLLYQND-FQFLKDVLQSVD--A 176
Query: 256 PVFLDGGVRRGTDVFKALALGASGIFIG 283
V +G V + + LG +G
Sbjct: 177 KVIAEGNVITPDMYKRVMDLGVHCSVVG 204
|
| >1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 Length = 491 | Back alignment and structure |
|---|
Score = 43.2 bits (103), Expect = 8e-05
Identities = 21/108 (19%), Positives = 40/108 (37%), Gaps = 22/108 (20%)
Query: 191 VKWL-QTITKLPILVKGVLTAEDARIAVQAGAAGI-------------IVSNHGARQLDY 236
+ + ++ + TAE AR AG + +V+ G Q
Sbjct: 265 IAEIRAHFPNRTLIAGNIATAEGARALYDAGVDVVKVGIGPGSICTTRVVAGVGVPQ--- 321
Query: 237 VPATIMALEEVVKATQGR-IPVFLDGGVRRGTDVFKALALGASGIFIG 283
+ A+ + + + DGG++ D+ KALA G + + +G
Sbjct: 322 ----VTAIYDAAAVAREYGKTIIADGGIKYSGDIVKALAAGGNAVMLG 365
|
| >4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} Length = 496 | Back alignment and structure |
|---|
Score = 43.2 bits (103), Expect = 8e-05
Identities = 31/108 (28%), Positives = 46/108 (42%), Gaps = 22/108 (20%)
Query: 191 VKWL-QTITKLPILVKGVLTAEDARIAVQAGAAGI-------------IVSNHGARQLDY 236
++ L I+ V TAE AR ++AG + + IV+ G Q
Sbjct: 263 IRETRAAYPHLEIIGGNVATAEGARALIEAGVSAVKVGIGPGSICTTRIVTGVGVPQ--- 319
Query: 237 VPATIMALEEVVKATQGR-IPVFLDGGVRRGTDVFKALALGASGIFIG 283
I A+ + IPV DGG+R D+ KA+A GAS + +G
Sbjct: 320 ----ITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMVG 363
|
| >3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A* Length = 369 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 9e-05
Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 13/88 (14%)
Query: 207 VLTAEDARIAVQAGAAGIIVSNHGA----------RQLDYVPATIMAL-EEVVKATQGRI 255
T E+AR AGA +I A + D +++L +V +A I
Sbjct: 152 ATTPEEARAVEAAGADAVIAQGVEAGGHQGTHRDSSEDDGAGIGLLSLLAQVREAV--DI 209
Query: 256 PVFLDGGVRRGTDVFKALALGASGIFIG 283
PV GG+ RG + LA GA +G
Sbjct: 210 PVVAAGGIMRGGQIAAVLAAGADAAQLG 237
|
| >3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} PDB: 3ieb_A* Length = 218 | Back alignment and structure |
|---|
Score = 41.9 bits (98), Expect = 1e-04
Identities = 20/109 (18%), Positives = 43/109 (39%), Gaps = 4/109 (3%)
Query: 199 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 258
++ I + G T +DA+ V G I +L + T L+++ + + I +
Sbjct: 111 EIQIEIYGNWTMQDAKAWVDLGITQAIYHRSRDAELAGIGWTTDDLDKMRQLSALGIELS 170
Query: 259 LDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLRE 307
+ GG+ ++ + GR + AEG++ + E +
Sbjct: 171 ITGGIVPED-IYLFEGIKTKTFIAGRALA---GAEGQQTAAALREQIDR 215
|
| >2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1 Length = 486 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 2e-04
Identities = 26/105 (24%), Positives = 40/105 (38%), Gaps = 19/105 (18%)
Query: 191 VKWLQTITKLPILVKGVLTAEDARIAVQAGAA--GI---------IVSNHGARQLDYVPA 239
+K ++ +V + + A A GI IV+ G Q
Sbjct: 260 MKEMRQKVDADFIVGNIANPKAVDDLTFADAVKVGIGPGSICTTRIVAGVGVPQ------ 313
Query: 240 TIMALEEVVKATQGR-IPVFLDGGVRRGTDVFKALALGASGIFIG 283
I A+ V Q + V DGG+R D+ KA+A GA + +G
Sbjct: 314 -ITAVAMVADRAQEYGLYVIADGGIRYSGDIVKAIAAGADAVMLG 357
|
| >2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A* Length = 328 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 2e-04
Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 6/80 (7%)
Query: 207 VLTAEDARIAVQAGAAGIIVSNH---GARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 263
A A + G + + G D +P ++ L R+P+ GG
Sbjct: 125 CTAVRHALKAERLGVDAVSIDGFECAGHPGEDDIPGLVL-LPAAANRL--RVPIIASGGF 181
Query: 264 RRGTDVFKALALGASGIFIG 283
G + ALALGA I +G
Sbjct: 182 ADGRGLVAALALGADAINMG 201
|
| >2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A* Length = 332 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 3e-04
Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 4/78 (5%)
Query: 207 VLTAEDARIAVQAGAAGIIVSNH-GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 265
V + A+ + GA +I + + + + +V A IPV GG+
Sbjct: 117 VPSVALAKRMEKIGADAVIAEGMEAGGHIGKLTTMTL-VRQVATAI--SIPVIAAGGIAD 173
Query: 266 GTDVFKALALGASGIFIG 283
G LGA + +G
Sbjct: 174 GEGAAAGFMLGAEAVQVG 191
|
| >3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8} Length = 326 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 5e-04
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 207 VLTAEDARIAVQAGAAGIIVSNH-GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 265
V + AR+ +AGA +I + V ++ + +V ++ IPV GG+
Sbjct: 131 VASDSLARMVERAGADAVIAEGMESGGHIGEVTTFVL-VNKVSRSV--NIPVIAAGGIAD 187
Query: 266 GTDVFKALALGASGIFIG 283
G + A ALGA + +G
Sbjct: 188 GRGMAAAFALGAEAVQMG 205
|
| >3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp} Length = 361 | Back alignment and structure |
|---|
Score = 39.9 bits (94), Expect = 7e-04
Identities = 46/257 (17%), Positives = 84/257 (32%), Gaps = 61/257 (23%)
Query: 42 AFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAG 101
+++ R V + + +++P++ A M + E A + G
Sbjct: 18 SYNHHE--SR---RVVETTSTDRLGKLTLNLPVISAN--MDTI----TESNMANFMHSKG 66
Query: 102 TIMVYKDRNVVAQLVRRAERA-GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQG 160
+ + + ++ ++ G +++ L R EA G
Sbjct: 67 AMGALHRFMTIEENIQEFKKCKGPVFVSVGCTENELQRAEALRDA--------------G 112
Query: 161 LDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWL-QTITKLPILVKGVLTAEDARIAVQA 219
D +D A+ A+ +K L Q + I+ V T A
Sbjct: 113 ADFFCVDVAH-----AHAKYVGKT------LKSLRQLLGSRCIMAGNVATYAGADYLASC 161
Query: 220 GA----AGI---------IVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 266
GA AGI I + G L +++ +A + DGG++
Sbjct: 162 GADIIKAGIGGGSVCSTRIKTGFGVPMLT-------CIQDCSRAD---RSIVADGGIKTS 211
Query: 267 TDVFKALALGASGIFIG 283
D+ KALA GA + IG
Sbjct: 212 GDIVKALAFGADFVMIG 228
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 344 | |||
| 3sgz_A | 352 | Hydroxyacid oxidase 2; flavoprotein, homology, INH | 100.0 | |
| 2nzl_A | 392 | Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, G | 100.0 | |
| 2nli_A | 368 | Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid | 100.0 | |
| 1gox_A | 370 | (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoredu | 100.0 | |
| 1p4c_A | 380 | L(+)-mandelate dehydrogenase; TIM barrel, hydroxy | 100.0 | |
| 1kbi_A | 511 | Cytochrome B2, L-LCR; flavocytochrome B2, electron | 100.0 | |
| 3sr7_A | 365 | Isopentenyl-diphosphate delta-isomerase; isopenten | 100.0 | |
| 3vkj_A | 368 | Isopentenyl-diphosphate delta-isomerase; type 2 is | 100.0 | |
| 1vcf_A | 332 | Isopentenyl-diphosphate delta-isomerase; TIM barre | 100.0 | |
| 2qr6_A | 393 | IMP dehydrogenase/GMP reductase; NP_599840.1, G re | 100.0 | |
| 1p0k_A | 349 | Isopentenyl-diphosphate delta-isomerase; terpene b | 100.0 | |
| 1ypf_A | 336 | GMP reductase; GUAC, purines, pyrimidines, nucleos | 100.0 | |
| 2c6q_A | 351 | GMP reductase 2; TIM barrel, metal-binding, NADP, | 100.0 | |
| 3r2g_A | 361 | Inosine 5'-monophosphate dehydrogenase; structural | 99.97 | |
| 1eep_A | 404 | Inosine 5'-monophosphate dehydrogenase; alpha-beta | 99.96 | |
| 1ea0_A | 1479 | Glutamate synthase [NADPH] large chain; oxidoreduc | 99.94 | |
| 1ofd_A | 1520 | Ferredoxin-dependent glutamate synthase 2; oxidore | 99.94 | |
| 3khj_A | 361 | Inosine-5-monophosphate dehydrogenase; enzyme-inhi | 99.93 | |
| 3ffs_A | 400 | Inosine-5-monophosphate dehydrogenase; beta-alpha | 99.91 | |
| 4fo4_A | 366 | Inosine 5'-monophosphate dehydrogenase; structural | 99.91 | |
| 4af0_A | 556 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 99.88 | |
| 3usb_A | 511 | Inosine-5'-monophosphate dehydrogenase; structural | 99.86 | |
| 2e6f_A | 314 | Dihydroorotate dehydrogenase; chagas disease, pyri | 99.84 | |
| 4avf_A | 490 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 99.84 | |
| 1me8_A | 503 | Inosine-5'-monophosphate dehydrogenase; alpha beta | 99.83 | |
| 4fxs_A | 496 | Inosine-5'-monophosphate dehydrogenase; structural | 99.82 | |
| 2cu0_A | 486 | Inosine-5'-monophosphate dehydrogenase; structural | 99.81 | |
| 1jub_A | 311 | Dihydroorotate dehydrogenase A; homodimer, alpha-b | 99.81 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 99.8 | |
| 4ef8_A | 354 | Dihydroorotate dehydrogenase; phenyl isothiocyanat | 99.8 | |
| 1ep3_A | 311 | Dihydroorotate dehydrogenase B (PYRD subunit); het | 99.78 | |
| 1vrd_A | 494 | Inosine-5'-monophosphate dehydrogenase; TM1347, st | 99.78 | |
| 1jcn_A | 514 | Inosine monophosphate dehydrogenase I; IMPD, IMPDH | 99.76 | |
| 3oix_A | 345 | Putative dihydroorotate dehydrogenase; dihydrooro | 99.75 | |
| 1f76_A | 336 | Dihydroorotate dehydrogenase; monomer, alpha-beta- | 99.74 | |
| 1zfj_A | 491 | Inosine monophosphate dehydrogenase; IMPDH, CBS do | 99.73 | |
| 3zwt_A | 367 | Dihydroorotate dehydrogenase (quinone), mitochond; | 99.73 | |
| 3i65_A | 415 | Dihydroorotate dehydrogenase homolog, mitochondria | 99.72 | |
| 3tjx_A | 354 | Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh | 99.69 | |
| 1vhn_A | 318 | Putative flavin oxidoreducatase; structural genomi | 99.68 | |
| 1tv5_A | 443 | Dhodehase, dihydroorotate dehydrogenase homolog, m | 99.63 | |
| 3bo9_A | 326 | Putative nitroalkan dioxygenase; TM0800, structura | 99.54 | |
| 2gjl_A | 328 | Hypothetical protein PA1024; 2-nitropropane dioxyg | 99.5 | |
| 2z6i_A | 332 | Trans-2-enoyl-ACP reductase II; fatty acid synthes | 99.48 | |
| 3b0p_A | 350 | TRNA-dihydrouridine synthase; TIM barrel, oxidored | 99.47 | |
| 3bw2_A | 369 | 2-nitropropane dioxygenase; TIM barrel, oxidoreduc | 99.41 | |
| 2uva_G | 2060 | Fatty acid synthase beta subunits; fungal, dehydra | 99.22 | |
| 1y0e_A | 223 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 99.06 | |
| 1mzh_A | 225 | Deoxyribose-phosphate aldolase; alpha-beta barrel, | 99.03 | |
| 3gr7_A | 340 | NADPH dehydrogenase; flavin, FMN, beta-alpha-barre | 99.0 | |
| 1z41_A | 338 | YQJM, probable NADH-dependent flavin oxidoreductas | 98.99 | |
| 3igs_A | 232 | N-acetylmannosamine-6-phosphate 2-epimerase 2; ene | 98.97 | |
| 3q58_A | 229 | N-acetylmannosamine-6-phosphate 2-epimerase; TIM b | 98.94 | |
| 3ngj_A | 239 | Deoxyribose-phosphate aldolase; lyase, structural | 98.91 | |
| 3hgj_A | 349 | Chromate reductase; TIM barrel, oxidoreductase; HE | 98.91 | |
| 3oa3_A | 288 | Aldolase; structural genomics, seattle structural | 98.87 | |
| 3r12_A | 260 | Deoxyribose-phosphate aldolase; TIM beta/alpha-bar | 98.8 | |
| 3l5l_A | 363 | Xenobiotic reductase A; TIM barrel, oxidoreductase | 98.77 | |
| 1yxy_A | 234 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 98.73 | |
| 3ndo_A | 231 | Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid | 98.72 | |
| 1geq_A | 248 | Tryptophan synthase alpha-subunit; hyperthermophIl | 98.72 | |
| 1wa3_A | 205 | 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, | 98.71 | |
| 2gou_A | 365 | Oxidoreductase, FMN-binding; OLD yeallow enzyme, f | 98.71 | |
| 1wv2_A | 265 | Thiazole moeity, thiazole biosynthesis protein THI | 98.7 | |
| 3tsm_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 98.7 | |
| 3kru_A | 343 | NADH:flavin oxidoreductase/NADH oxidase; homotetra | 98.69 | |
| 2r14_A | 377 | Morphinone reductase; H-tunnelling, flavoprotein, | 98.69 | |
| 2nv1_A | 305 | Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-b | 98.68 | |
| 2v82_A | 212 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l | 98.66 | |
| 4adt_A | 297 | Pyridoxine biosynthetic enzyme PDX1 homologue, PU; | 98.65 | |
| 2uv8_G | 2051 | Fatty acid synthase subunit beta (FAS1); fatty aci | 98.65 | |
| 1qop_A | 268 | Tryptophan synthase alpha chain; lyase, carbon-oxy | 98.65 | |
| 1vyr_A | 364 | Pentaerythritol tetranitrate reductase; oxidoreduc | 98.65 | |
| 2hsa_B | 402 | 12-oxophytodienoate reductase 3; alpha beta 8 barr | 98.64 | |
| 3nav_A | 271 | Tryptophan synthase alpha chain; alpha subunit, st | 98.63 | |
| 1icp_A | 376 | OPR1, 12-oxophytodienoate reductase 1; beta-alpha- | 98.63 | |
| 4e38_A | 232 | Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho | 98.63 | |
| 3vnd_A | 267 | TSA, tryptophan synthase alpha chain; psychrophili | 98.63 | |
| 4ab4_A | 362 | Xenobiotic reductase B; oxidoreductase, OLD yellow | 98.6 | |
| 3gka_A | 361 | N-ethylmaleimide reductase; decode biostructures, | 98.59 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 98.57 | |
| 1xm3_A | 264 | Thiazole biosynthesis protein THIG; structural gen | 98.57 | |
| 2zbt_A | 297 | Pyridoxal biosynthesis lyase PDXS; pyridoxine bios | 98.55 | |
| 1yad_A | 221 | Regulatory protein TENI; TIM barrel, transcription | 98.52 | |
| 3l5a_A | 419 | NADH/flavin oxidoreductase/NADH oxidase; OLD yello | 98.48 | |
| 2htm_A | 268 | Thiazole biosynthesis protein THIG; thiamin biosyn | 98.45 | |
| 3qja_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 98.44 | |
| 3aty_A | 379 | Tcoye, prostaglandin F2A synthase; alpha/beta barr | 98.43 | |
| 2yw3_A | 207 | 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deox | 98.41 | |
| 1vcv_A | 226 | Probable deoxyribose-phosphate aldolase; DERA, hyp | 98.39 | |
| 1rd5_A | 262 | Tryptophan synthase alpha chain, chloroplast; hydr | 98.36 | |
| 3lab_A | 217 | Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) | 98.34 | |
| 2yzr_A | 330 | Pyridoxal biosynthesis lyase PDXS; redox protein, | 98.33 | |
| 1h5y_A | 253 | HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py | 98.32 | |
| 2y88_A | 244 | Phosphoribosyl isomerase A; aromatic amino acid bi | 98.31 | |
| 1vc4_A | 254 | Indole-3-glycerol phosphate synthase; lyase, trypt | 98.3 | |
| 1ka9_F | 252 | Imidazole glycerol phosphtate synthase; riken stru | 98.29 | |
| 2tps_A | 227 | Protein (thiamin phosphate synthase); thiamin bios | 98.27 | |
| 1o94_A | 729 | Tmadh, trimethylamine dehydrogenase; electron tran | 98.27 | |
| 1vhc_A | 224 | Putative KHG/KDPG aldolase; structural genomics, u | 98.26 | |
| 3f4w_A | 211 | Putative hexulose 6 phosphate synthase; humps, mal | 98.26 | |
| 1vzw_A | 244 | Phosphoribosyl isomerase A; histidine biosynthesis | 98.25 | |
| 3o63_A | 243 | Probable thiamine-phosphate pyrophosphorylase; thi | 98.25 | |
| 1thf_D | 253 | HISF protein; thermophIle, TIM-barrel, histidine b | 98.24 | |
| 3o07_A | 291 | Pyridoxine biosynthesis protein SNZ1; (beta/alpha) | 98.24 | |
| 1wbh_A | 214 | KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} | 98.23 | |
| 4a29_A | 258 | Engineered retro-aldol enzyme RA95.0; de novo prot | 98.23 | |
| 1ub3_A | 220 | Aldolase protein; schiff base, deoxyribose phospha | 98.23 | |
| 1qo2_A | 241 | Molecule: N-((5-phosphoribosyl)-formimino)-5-amino | 98.23 | |
| 3zen_D | 3089 | Fatty acid synthase; transferase, mycolic acid bio | 98.23 | |
| 2w6r_A | 266 | Imidazole glycerol phosphate synthase subunit HISF | 98.2 | |
| 1xi3_A | 215 | Thiamine phosphate pyrophosphorylase; structural g | 98.18 | |
| 2qjg_A | 273 | Putative aldolase MJ0400; beta-alpha barrel, lyase | 98.16 | |
| 2ekc_A | 262 | AQ_1548, tryptophan synthase alpha chain; structur | 98.16 | |
| 2a4a_A | 281 | Deoxyribose-phosphate aldolase; lyase, TIM beta/al | 98.14 | |
| 1mxs_A | 225 | KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate a | 98.14 | |
| 3ovp_A | 228 | Ribulose-phosphate 3-epimerase; iron binding, isom | 98.14 | |
| 1jvn_A | 555 | Glutamine, bifunctional histidine biosynthesis pro | 98.13 | |
| 3k30_A | 690 | Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi | 98.11 | |
| 1ujp_A | 271 | Tryptophan synthase alpha chain; riken structural | 98.07 | |
| 3tdn_A | 247 | FLR symmetric alpha-beta TIM barrel; symmetric sup | 98.04 | |
| 1zfj_A | 491 | Inosine monophosphate dehydrogenase; IMPDH, CBS do | 98.04 | |
| 4gj1_A | 243 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 98.0 | |
| 3tdn_A | 247 | FLR symmetric alpha-beta TIM barrel; symmetric sup | 97.91 | |
| 1pii_A | 452 | N-(5'phosphoribosyl)anthranilate isomerase; bifunc | 97.91 | |
| 2agk_A | 260 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 97.89 | |
| 1w8s_A | 263 | FBP aldolase, fructose-bisphosphate aldolase class | 97.87 | |
| 3inp_A | 246 | D-ribulose-phosphate 3-epimerase; IDP02542, isomer | 97.87 | |
| 1qap_A | 296 | Quinolinic acid phosphoribosyltransferase; glycosy | 97.86 | |
| 2fli_A | 220 | Ribulose-phosphate 3-epimerase; (beta/alpha)8-barr | 97.86 | |
| 1n7k_A | 234 | Deoxyribose-phosphate aldolase; A.pernix, tetramer | 97.85 | |
| 2b7n_A | 273 | Probable nicotinate-nucleotide pyrophosphorylase; | 97.83 | |
| 3jr2_A | 218 | Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulon | 97.82 | |
| 1i4n_A | 251 | Indole-3-glycerol phosphate synthase; thermostable | 97.81 | |
| 1thf_D | 253 | HISF protein; thermophIle, TIM-barrel, histidine b | 97.77 | |
| 1ka9_F | 252 | Imidazole glycerol phosphtate synthase; riken stru | 97.76 | |
| 1p1x_A | 260 | Deoxyribose-phosphate aldolase; alpha-beta barrel, | 97.76 | |
| 1h5y_A | 253 | HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py | 97.69 | |
| 1h1y_A | 228 | D-ribulose-5-phosphate 3-epimerase; oxidative pent | 97.67 | |
| 3vk5_A | 286 | MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {S | 97.66 | |
| 2jbm_A | 299 | Nicotinate-nucleotide pyrophosphorylase; NAD, enzy | 97.61 | |
| 4a3u_A | 358 | NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET | 97.6 | |
| 1rpx_A | 230 | Protein (ribulose-phosphate 3-epimerase); chloropl | 97.6 | |
| 1x1o_A | 286 | Nicotinate-nucleotide pyrophosphorylase; transfera | 97.59 | |
| 2y88_A | 244 | Phosphoribosyl isomerase A; aromatic amino acid bi | 97.55 | |
| 1wv2_A | 265 | Thiazole moeity, thiazole biosynthesis protein THI | 97.54 | |
| 4eiv_A | 297 | Deoxyribose-phosphate aldolase; chemotherapy, brai | 97.54 | |
| 3tqv_A | 287 | Nicotinate-nucleotide pyrophosphorylase; glycosylt | 97.52 | |
| 1tqj_A | 230 | Ribulose-phosphate 3-epimerase; beta-alpha barrel | 97.52 | |
| 3glc_A | 295 | Aldolase LSRF; TIM barrel, lyase, schiff base; HET | 97.51 | |
| 3c2e_A | 294 | Nicotinate-nucleotide pyrophosphorylase; qprtase, | 97.51 | |
| 3tjl_A | 407 | NADPH dehydrogenase; OLD yellow enzyme, flavin mon | 97.5 | |
| 2w6r_A | 266 | Imidazole glycerol phosphate synthase subunit HISF | 97.5 | |
| 3s1x_A | 223 | Probable transaldolase; alpha-beta barrel, conform | 97.49 | |
| 3ceu_A | 210 | Thiamine phosphate pyrophosphorylase; TIM barrel-l | 97.48 | |
| 2p10_A | 286 | MLL9387 protein; putative phosphonopyruvate hydrol | 97.48 | |
| 1vrd_A | 494 | Inosine-5'-monophosphate dehydrogenase; TM1347, st | 97.48 | |
| 1vzw_A | 244 | Phosphoribosyl isomerase A; histidine biosynthesis | 97.47 | |
| 3vzx_A | 228 | Heptaprenylglyceryl phosphate synthase; biosynthes | 97.47 | |
| 1qo2_A | 241 | Molecule: N-((5-phosphoribosyl)-formimino)-5-amino | 97.46 | |
| 3paj_A | 320 | Nicotinate-nucleotide pyrophosphorylase, carboxyl; | 97.44 | |
| 3ctl_A | 231 | D-allulose-6-phosphate 3-epimerase; D-glucitol 6-p | 97.42 | |
| 3r8r_A | 212 | Transaldolase; pentose phosphate pathway, schiff b | 97.4 | |
| 2czd_A | 208 | Orotidine 5'-phosphate decarboxylase; pyrimidine b | 97.4 | |
| 1jcn_A | 514 | Inosine monophosphate dehydrogenase I; IMPD, IMPDH | 97.34 | |
| 2qr6_A | 393 | IMP dehydrogenase/GMP reductase; NP_599840.1, G re | 97.3 | |
| 3ajx_A | 207 | 3-hexulose-6-phosphate synthase; HPS, OMPDC supraf | 97.3 | |
| 3l0g_A | 300 | Nicotinate-nucleotide pyrophosphorylase; ssgcid, N | 97.29 | |
| 1o4u_A | 285 | Type II quinolic acid phosphoribosyltransferase; s | 97.28 | |
| 3kts_A | 192 | Glycerol uptake operon antiterminator regulatory; | 97.25 | |
| 3tha_A | 252 | Tryptophan synthase alpha chain; structural genomi | 97.25 | |
| 3cwo_X | 237 | Beta/alpha-barrel protein based on 1THF and 1TMY; | 97.21 | |
| 1q6o_A | 216 | Humps, 3-keto-L-gulonate 6-phosphate decarboxylase | 97.21 | |
| 3gnn_A | 298 | Nicotinate-nucleotide pyrophosphorylase; decode bi | 97.19 | |
| 2f6u_A | 234 | GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate sy | 97.17 | |
| 3exr_A | 221 | RMPD (hexulose-6-phosphate synthase); beta barrel, | 97.14 | |
| 1tqx_A | 227 | D-ribulose-5-phosphate 3-epimerase, putative; stru | 97.14 | |
| 3ve9_A | 215 | Orotidine-5'-phosphate decarboxylase; TIM barrel f | 97.06 | |
| 1viz_A | 240 | PCRB protein homolog; structural genomics, unknown | 97.05 | |
| 3nl6_A | 540 | Thiamine biosynthetic bifunctional enzyme; thiamin | 97.02 | |
| 4e38_A | 232 | Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho | 96.98 | |
| 1me8_A | 503 | Inosine-5'-monophosphate dehydrogenase; alpha beta | 96.95 | |
| 1qpo_A | 284 | Quinolinate acid phosphoribosyl transferase; type | 96.94 | |
| 3khj_A | 361 | Inosine-5-monophosphate dehydrogenase; enzyme-inhi | 96.9 | |
| 3lab_A | 217 | Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) | 96.88 | |
| 4dbe_A | 222 | Orotidine 5'-phosphate decarboxylase; TIM barrel, | 96.82 | |
| 3qja_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 96.81 | |
| 1vpx_A | 230 | Protein (transaldolase (EC 2.2.1.2)); TM0295, stru | 96.79 | |
| 2h6r_A | 219 | Triosephosphate isomerase; beta-alpha barrel; 2.30 | 96.78 | |
| 1hg3_A | 225 | Triosephosphate isomerase; thermostability, tetram | 96.75 | |
| 1to3_A | 304 | Putative aldolase YIHT; beta-alpha barrel, structu | 96.7 | |
| 1w0m_A | 226 | TIM, triosephosphate isomerase; glycolysis, glucon | 96.64 | |
| 4gj1_A | 243 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 96.62 | |
| 1vhc_A | 224 | Putative KHG/KDPG aldolase; structural genomics, u | 96.62 | |
| 1wa3_A | 205 | 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, | 96.59 | |
| 1wbh_A | 214 | KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} | 96.58 | |
| 1l6w_A | 220 | Fructose-6-phosphate aldolase 1; alpha-beta barrel | 96.52 | |
| 3q58_A | 229 | N-acetylmannosamine-6-phosphate 2-epimerase; TIM b | 96.37 | |
| 1mxs_A | 225 | KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate a | 96.37 | |
| 3iv3_A | 332 | Tagatose 1,6-diphosphate aldolase 2; TIM barrel, p | 96.37 | |
| 3w01_A | 235 | Heptaprenylglyceryl phosphate synthase; biosynthes | 96.36 | |
| 3igs_A | 232 | N-acetylmannosamine-6-phosphate 2-epimerase 2; ene | 96.35 | |
| 1jvn_A | 555 | Glutamine, bifunctional histidine biosynthesis pro | 96.29 | |
| 1wx0_A | 223 | Transaldolase; structural genomics, riken structur | 96.27 | |
| 4fo4_A | 366 | Inosine 5'-monophosphate dehydrogenase; structural | 96.25 | |
| 4gbu_A | 400 | NADPH dehydrogenase 1; alpha/beta barrel, enenone | 96.25 | |
| 1i4n_A | 251 | Indole-3-glycerol phosphate synthase; thermostable | 96.21 | |
| 1vkf_A | 188 | Glycerol uptake operon antiterminator-related Pro; | 96.14 | |
| 3nvt_A | 385 | 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; | 96.07 | |
| 1y0e_A | 223 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 95.98 | |
| 3r2g_A | 361 | Inosine 5'-monophosphate dehydrogenase; structural | 95.81 | |
| 2agk_A | 260 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 95.78 | |
| 2yw3_A | 207 | 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deox | 95.69 | |
| 1pii_A | 452 | N-(5'phosphoribosyl)anthranilate isomerase; bifunc | 95.61 | |
| 3m47_A | 228 | Orotidine 5'-phosphate decarboxylase; orotidine 5' | 95.57 | |
| 1vc4_A | 254 | Indole-3-glycerol phosphate synthase; lyase, trypt | 95.56 | |
| 3daq_A | 292 | DHDPS, dihydrodipicolinate synthase; lysine biosyn | 95.47 | |
| 3ih1_A | 305 | Methylisocitrate lyase; alpha-beta structure, TIM- | 95.44 | |
| 3cpr_A | 304 | Dihydrodipicolinate synthetase; (beta/alpha)8-barr | 95.36 | |
| 3o07_A | 291 | Pyridoxine biosynthesis protein SNZ1; (beta/alpha) | 95.35 | |
| 3cu2_A | 237 | Ribulose-5-phosphate 3-epimerase; YP_718263.1, rib | 95.35 | |
| 1xm3_A | 264 | Thiazole biosynthesis protein THIG; structural gen | 95.34 | |
| 1zco_A | 262 | 2-dehydro-3-deoxyphosphoheptonate aldolase; arabin | 95.33 | |
| 3tak_A | 291 | DHDPS, dihydrodipicolinate synthase; TIM barrel, l | 95.32 | |
| 1xky_A | 301 | Dihydrodipicolinate synthase; TIM barrel, , lysine | 95.26 | |
| 3si9_A | 315 | DHDPS, dihydrodipicolinate synthase; structural ge | 95.19 | |
| 3flu_A | 297 | DHDPS, dihydrodipicolinate synthase; TIM barrel, b | 95.18 | |
| 3ru6_A | 303 | Orotidine 5'-phosphate decarboxylase; structural g | 95.17 | |
| 2wkj_A | 303 | N-acetylneuraminate lyase; directed evolution, sia | 95.16 | |
| 1f6k_A | 293 | N-acetylneuraminate lyase; beta barrel; 1.60A {Hae | 95.14 | |
| 2v82_A | 212 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l | 95.14 | |
| 3tsm_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 95.14 | |
| 3tfx_A | 259 | Orotidine 5'-phosphate decarboxylase; PSI-biology, | 95.13 | |
| 3l21_A | 304 | DHDPS, dihydrodipicolinate synthase; DAPA, dimer, | 95.11 | |
| 1yxy_A | 234 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 95.05 | |
| 2pgw_A | 384 | Muconate cycloisomerase; enolase superfamily, octa | 95.04 | |
| 3na8_A | 315 | Putative dihydrodipicolinate synthetase; lyase; HE | 95.02 | |
| 3b4u_A | 294 | Dihydrodipicolinate synthase; structural genomics, | 95.01 | |
| 2yxg_A | 289 | DHDPS, dihydrodipicolinate synthase; MJ0244, TIM b | 95.0 | |
| 2bdq_A | 224 | Copper homeostasis protein CUTC; alpha beta protei | 95.0 | |
| 3fkr_A | 309 | L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL f | 94.98 | |
| 2v9d_A | 343 | YAGE; dihydrodipicolinic acid synthase, N-acetyl n | 94.98 | |
| 3ldv_A | 255 | Orotidine 5'-phosphate decarboxylase; structural g | 94.96 | |
| 3qze_A | 314 | DHDPS, dihydrodipicolinate synthase; alpha beta ba | 94.95 | |
| 2ehh_A | 294 | DHDPS, dihydrodipicolinate synthase; structural ge | 94.94 | |
| 2r8w_A | 332 | AGR_C_1641P; APC7498, dihydrodipicolinate synthase | 94.93 | |
| 2wqp_A | 349 | Polysialic acid capsule biosynthesis protein SIAC; | 94.89 | |
| 1ypf_A | 336 | GMP reductase; GUAC, purines, pyrimidines, nucleos | 94.86 | |
| 4avf_A | 490 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 94.85 | |
| 2rfg_A | 297 | Dihydrodipicolinate synthase; beta barrel, amino-a | 94.82 | |
| 2ojp_A | 292 | DHDPS, dihydrodipicolinate synthase; dimer, lysine | 94.82 | |
| 3nav_A | 271 | Tryptophan synthase alpha chain; alpha subunit, st | 94.81 | |
| 1o5k_A | 306 | DHDPS, dihydrodipicolinate synthase; TM1521, struc | 94.77 | |
| 3tr2_A | 239 | Orotidine 5'-phosphate decarboxylase; purines, pyr | 94.75 | |
| 3m5v_A | 301 | DHDPS, dihydrodipicolinate synthase; TIM barrel, c | 94.72 | |
| 2vc6_A | 292 | MOSA, dihydrodipicolinate synthase; DHDPS, TIM bar | 94.66 | |
| 3qfe_A | 318 | Putative dihydrodipicolinate synthase family PROT; | 94.65 | |
| 4af0_A | 556 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 94.64 | |
| 4fxs_A | 496 | Inosine-5'-monophosphate dehydrogenase; structural | 94.63 | |
| 3kts_A | 192 | Glycerol uptake operon antiterminator regulatory; | 94.62 | |
| 3vnd_A | 267 | TSA, tryptophan synthase alpha chain; psychrophili | 94.57 | |
| 3d0c_A | 314 | Dihydrodipicolinate synthase; lysine biosynthesis, | 94.57 | |
| 3s5o_A | 307 | 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; | 94.55 | |
| 3ffs_A | 400 | Inosine-5-monophosphate dehydrogenase; beta-alpha | 94.51 | |
| 3e96_A | 316 | Dihydrodipicolinate synthase; structural genomics, | 94.49 | |
| 3h5d_A | 311 | DHDPS, dihydrodipicolinate synthase; lysine biosyn | 94.41 | |
| 3dz1_A | 313 | Dihydrodipicolinate synthase; lysine biosynthesis, | 94.23 | |
| 2yyu_A | 246 | Orotidine 5'-phosphate decarboxylase; TIM barrel, | 94.23 | |
| 1vr6_A | 350 | Phospho-2-dehydro-3-deoxyheptonate aldolase; TM034 | 93.97 | |
| 1vli_A | 385 | Spore coat polysaccharide biosynthesis protein SP; | 93.84 | |
| 1rvk_A | 382 | Isomerase/lactonizing enzyme; enolase superfamily, | 93.84 | |
| 4dpp_A | 360 | DHDPS 2, dihydrodipicolinate synthase 2, chloropla | 93.82 | |
| 1xg4_A | 295 | Probable methylisocitrate lyase; 2-methylisocitrat | 93.81 | |
| 2hmc_A | 344 | AGR_L_411P, dihydrodipicolinate synthase; alpha-be | 93.78 | |
| 3eb2_A | 300 | Putative dihydrodipicolinate synthetase; lysine bi | 93.78 | |
| 4aaj_A | 228 | N-(5'-phosphoribosyl)anthranilate isomerase; alpha | 93.72 | |
| 3a5f_A | 291 | Dihydrodipicolinate synthase; TIM barrel, enzyme, | 93.68 | |
| 3g8r_A | 350 | Probable spore coat polysaccharide biosynthesis P; | 93.57 | |
| 1vs1_A | 276 | 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha | 93.56 | |
| 1eix_A | 245 | Orotidine 5'-monophosphate decarboxylase; alpha-be | 93.52 | |
| 1dbt_A | 239 | Orotidine 5'-phosphate decarboxylase; UMP, TIM bar | 93.51 | |
| 4adt_A | 297 | Pyridoxine biosynthetic enzyme PDX1 homologue, PU; | 93.32 | |
| 1ea0_A | 1479 | Glutamate synthase [NADPH] large chain; oxidoreduc | 93.31 | |
| 3iwp_A | 287 | Copper homeostasis protein CUTC homolog; conserved | 93.2 | |
| 2zbt_A | 297 | Pyridoxal biosynthesis lyase PDXS; pyridoxine bios | 92.97 | |
| 3usb_A | 511 | Inosine-5'-monophosphate dehydrogenase; structural | 92.95 | |
| 1qop_A | 268 | Tryptophan synthase alpha chain; lyase, carbon-oxy | 92.84 | |
| 1eep_A | 404 | Inosine 5'-monophosphate dehydrogenase; alpha-beta | 92.8 | |
| 3iwp_A | 287 | Copper homeostasis protein CUTC homolog; conserved | 92.68 | |
| 1s2w_A | 295 | Phosphoenolpyruvate phosphomutase; phosphonopyruva | 92.63 | |
| 3ozy_A | 389 | Putative mandelate racemase; beta-alpha barrel, en | 92.62 | |
| 1nu5_A | 370 | Chloromuconate cycloisomerase; enzyme, dehalogenat | 92.59 | |
| 3hjz_A | 334 | Transaldolase B; parachlorococcus, marine, cyanoba | 92.55 | |
| 1twd_A | 256 | Copper homeostasis protein CUTC; TIM-like protein, | 92.45 | |
| 1twd_A | 256 | Copper homeostasis protein CUTC; TIM-like protein, | 92.41 | |
| 2nv1_A | 305 | Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-b | 92.4 | |
| 3vk5_A | 286 | MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {S | 92.05 | |
| 1mdl_A | 359 | Mandelate racemase; isomerase, mandelate pathway, | 92.04 | |
| 2ovl_A | 371 | Putative racemase; structural genomics, PSI-2, pro | 91.96 | |
| 3rcy_A | 433 | Mandelate racemase/muconate lactonizing enzyme-LI | 91.78 | |
| 2gjl_A | 328 | Hypothetical protein PA1024; 2-nitropropane dioxyg | 91.7 | |
| 2c6q_A | 351 | GMP reductase 2; TIM barrel, metal-binding, NADP, | 91.66 | |
| 1vqt_A | 213 | Orotidine 5'-phosphate decarboxylase; TM0332, stru | 91.55 | |
| 3eez_A | 378 | Putative mandelate racemase/muconate lactonizing e | 91.47 | |
| 3dg3_A | 367 | Muconate cycloisomerase; muconate lactonizing enzy | 91.45 | |
| 3ajx_A | 207 | 3-hexulose-6-phosphate synthase; HPS, OMPDC supraf | 91.42 | |
| 3vav_A | 275 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 91.32 | |
| 2qgy_A | 391 | Enolase from the environmental genome shotgun sequ | 91.21 | |
| 1nsj_A | 205 | PRAI, phosphoribosyl anthranilate isomerase; therm | 90.95 | |
| 1ofd_A | 1520 | Ferredoxin-dependent glutamate synthase 2; oxidore | 90.94 | |
| 3f4w_A | 211 | Putative hexulose 6 phosphate synthase; humps, mal | 90.94 | |
| 3pm6_A | 306 | Putative fructose-bisphosphate aldolase; structura | 90.93 | |
| 2oz8_A | 389 | MLL7089 protein; structural genomics, unknown func | 90.8 | |
| 3tha_A | 252 | Tryptophan synthase alpha chain; structural genomi | 90.73 | |
| 3vzx_A | 228 | Heptaprenylglyceryl phosphate synthase; biosynthes | 90.69 | |
| 2wqp_A | 349 | Polysialic acid capsule biosynthesis protein SIAC; | 90.69 | |
| 2nql_A | 388 | AGR_PAT_674P, isomerase/lactonizing enzyme; enolas | 90.68 | |
| 2p8b_A | 369 | Mandelate racemase/muconate lactonizing enzyme fam | 90.55 | |
| 3jva_A | 354 | Dipeptide epimerase; enolase superfamily, isomeras | 90.51 | |
| 2hzg_A | 401 | Mandelate racemase/muconate lactonizing enzyme/EN | 90.35 | |
| 3zwt_A | 367 | Dihydroorotate dehydrogenase (quinone), mitochond; | 90.08 | |
| 2htm_A | 268 | Thiazole biosynthesis protein THIG; thiamin biosyn | 90.06 | |
| 2og9_A | 393 | Mandelate racemase/muconate lactonizing enzyme; NY | 89.99 | |
| 2r91_A | 286 | 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM | 89.99 | |
| 3w01_A | 235 | Heptaprenylglyceryl phosphate synthase; biosynthes | 89.97 | |
| 3q94_A | 288 | Fructose-bisphosphate aldolase, class II; structur | 89.95 | |
| 1viz_A | 240 | PCRB protein homolog; structural genomics, unknown | 89.94 | |
| 1gvf_A | 286 | Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; | 89.75 | |
| 3bo9_A | 326 | Putative nitroalkan dioxygenase; TM0800, structura | 89.62 | |
| 1zlp_A | 318 | PSR132, petal death protein; TIM-barrel, helix swa | 89.48 | |
| 2z6i_A | 332 | Trans-2-enoyl-ACP reductase II; fatty acid synthes | 89.41 | |
| 2f6u_A | 234 | GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate sy | 89.3 | |
| 3tkf_A | 345 | Transaldolase; structural genomics, center for str | 89.24 | |
| 3q94_A | 288 | Fructose-bisphosphate aldolase, class II; structur | 89.08 | |
| 3sz8_A | 285 | 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgci | 88.98 | |
| 3i4k_A | 383 | Muconate lactonizing enzyme; structural genomics, | 88.97 | |
| 3o63_A | 243 | Probable thiamine-phosphate pyrophosphorylase; thi | 88.89 | |
| 3fs2_A | 298 | 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, | 88.79 | |
| 4dwd_A | 393 | Mandelate racemase/muconate lactonizing enzyme, C | 88.79 | |
| 3m16_A | 329 | Transaldolase; dimer, molecular replac swiss-model | 88.33 | |
| 1v5x_A | 203 | PRA isomerase, phosphoribosylanthranilate isomeras | 88.12 | |
| 3lye_A | 307 | Oxaloacetate acetyl hydrolase; (alpha/beta)8 barre | 87.99 | |
| 3tml_A | 288 | 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, | 87.97 | |
| 2qdd_A | 378 | Mandelate racemase/muconate lactonizing enzyme; en | 87.96 | |
| 3toy_A | 383 | Mandelate racemase/muconate lactonizing enzyme FA | 87.93 | |
| 3cq0_A | 339 | Putative transaldolase YGR043C; alpha/beta barrel, | 87.89 | |
| 1gvf_A | 286 | Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; | 87.84 | |
| 3eoo_A | 298 | Methylisocitrate lyase; seattle structural genomic | 87.84 | |
| 2isw_A | 323 | Putative fructose-1,6-bisphosphate aldolase; class | 87.81 | |
| 2ps2_A | 371 | Putative mandelate racemase/muconate lactonizing e | 87.7 | |
| 2rdx_A | 379 | Mandelate racemase/muconate lactonizing enzyme, P; | 87.53 | |
| 3b0p_A | 350 | TRNA-dihydrouridine synthase; TIM barrel, oxidored | 87.47 | |
| 3eoo_A | 298 | Methylisocitrate lyase; seattle structural genomic | 87.34 | |
| 2pp0_A | 398 | L-talarate/galactarate dehydratase; enolase superf | 87.3 | |
| 2bdq_A | 224 | Copper homeostasis protein CUTC; alpha beta protei | 87.28 | |
| 3ugv_A | 390 | Enolase; enzyme function initiative, EFI, lyase; 2 | 87.19 | |
| 3stp_A | 412 | Galactonate dehydratase, putative; PSI biology, st | 87.17 | |
| 1w3i_A | 293 | EDA, 2-keto-3-deoxy gluconate aldolase; archaeal m | 87.07 | |
| 2hjp_A | 290 | Phosphonopyruvate hydrolase; phosporus-Ca cleavage | 87.06 | |
| 1gox_A | 370 | (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoredu | 87.03 | |
| 3q45_A | 368 | Mandelate racemase/muconate lactonizing enzyme FA | 86.98 | |
| 3tj4_A | 372 | Mandelate racemase; enolase, dehydratase, enzyme f | 86.85 | |
| 1xg4_A | 295 | Probable methylisocitrate lyase; 2-methylisocitrat | 86.78 | |
| 2ze3_A | 275 | DFA0005; organic waste LEFT-OVER decomposition, al | 86.76 | |
| 2hjp_A | 290 | Phosphonopyruvate hydrolase; phosporus-Ca cleavage | 86.76 | |
| 1s2w_A | 295 | Phosphoenolpyruvate phosphomutase; phosphonopyruva | 86.7 | |
| 1rd5_A | 262 | Tryptophan synthase alpha chain, chloroplast; hydr | 86.49 | |
| 3mqt_A | 394 | Mandelate racemase/muconate lactonizing protein; P | 86.4 | |
| 2gl5_A | 410 | Putative dehydratase protein; structural genomics, | 86.38 | |
| 3jr2_A | 218 | Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulon | 86.32 | |
| 3r0u_A | 379 | Enzyme of enolase superfamily; structural genomics | 86.29 | |
| 3ro6_B | 356 | Putative chloromuconate cycloisomerase; TIM barrel | 86.11 | |
| 3go2_A | 409 | Putative L-alanine-DL-glutamate epimerase; structu | 86.1 | |
| 2qde_A | 397 | Mandelate racemase/muconate lactonizing enzyme FA | 85.96 | |
| 1tkk_A | 366 | Similar to chloromuconate cycloisomerase; epimeras | 85.92 | |
| 3b8i_A | 287 | PA4872 oxaloacetate decarboxylase; alpha/beta barr | 85.91 | |
| 2nuw_A | 288 | 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho a | 85.91 | |
| 4e5t_A | 404 | Mandelate racemase / muconate lactonizing enzyme, | 85.49 | |
| 3mkc_A | 394 | Racemase; metabolic process, PSI2, NYSGXRC, struct | 85.37 | |
| 2hxt_A | 441 | L-fuconate dehydratase; enolase superfamily, D-ery | 85.36 | |
| 3mwc_A | 400 | Mandelate racemase/muconate lactonizing protein; e | 85.36 | |
| 2o56_A | 407 | Putative mandelate racemase; dehydratase, structur | 85.27 | |
| 3vcn_A | 425 | Mannonate dehydratase; enolase, magnesium binding | 85.25 | |
| 3ih1_A | 305 | Methylisocitrate lyase; alpha-beta structure, TIM- | 85.17 | |
| 4a29_A | 258 | Engineered retro-aldol enzyme RA95.0; de novo prot | 85.17 | |
| 1sjd_A | 368 | N-acylamino acid racemase; lyase, isomerase; HET: | 85.09 | |
| 1o66_A | 275 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 84.84 | |
| 2poz_A | 392 | Putative dehydratase; octamer, structural genomics | 84.8 | |
| 1xi3_A | 215 | Thiamine phosphate pyrophosphorylase; structural g | 84.8 | |
| 1zlp_A | 318 | PSR132, petal death protein; TIM-barrel, helix swa | 84.78 | |
| 2ox4_A | 403 | Putative mandelate racemase; enolase, dehydratase, | 84.4 | |
| 1yad_A | 221 | Regulatory protein TENI; TIM barrel, transcription | 84.39 | |
| 3fok_A | 307 | Uncharacterized protein CGL0159; CGL0159 ,brevibac | 84.35 | |
| 3fa4_A | 302 | 2,3-dimethylmalate lyase; alpha/beta barrel, helix | 84.26 | |
| 1rvg_A | 305 | Fructose-1,6-bisphosphate aldolase; class II aldol | 84.26 | |
| 3n9r_A | 307 | Fructose-bisphosphate aldolase; FBP aldolase, clas | 84.04 | |
| 1m3u_A | 264 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 83.7 | |
| 3gd6_A | 391 | Muconate cycloisomerase; structural genomics, NYSG | 83.69 | |
| 1o60_A | 292 | 2-dehydro-3-deoxyphosphooctonate aldolase; structu | 83.68 | |
| 3ctl_A | 231 | D-allulose-6-phosphate 3-epimerase; D-glucitol 6-p | 83.51 | |
| 3fa4_A | 302 | 2,3-dimethylmalate lyase; alpha/beta barrel, helix | 83.4 | |
| 2gdq_A | 382 | YITF; mandelate racemase/muconate lactonizing enzy | 83.36 | |
| 3lye_A | 307 | Oxaloacetate acetyl hydrolase; (alpha/beta)8 barre | 83.35 | |
| 3v3w_A | 424 | Starvation sensing protein RSPA; enolase, enzyme f | 83.34 | |
| 3sgz_A | 352 | Hydroxyacid oxidase 2; flavoprotein, homology, INH | 83.29 | |
| 1vkf_A | 188 | Glycerol uptake operon antiterminator-related Pro; | 83.29 | |
| 2tps_A | 227 | Protein (thiamin phosphate synthase); thiamin bios | 83.19 | |
| 1n8f_A | 350 | DAHP synthetase; (beta/alpha)8 barrel, metal bindi | 83.07 | |
| 2yzr_A | 330 | Pyridoxal biosynthesis lyase PDXS; redox protein, | 83.03 | |
| 3dip_A | 410 | Enolase; structural genomics, isomerase, PSI-2, pr | 83.0 | |
| 4e4u_A | 412 | Mandalate racemase/muconate lactonizing enzyme; ma | 82.91 | |
| 3qw3_A | 255 | Orotidine-5-phosphate decarboxylase/orotate phosph | 82.9 | |
| 3g8r_A | 350 | Probable spore coat polysaccharide biosynthesis P; | 82.86 | |
| 3r4e_A | 418 | Mandelate racemase/muconate lactonizing enzyme; en | 82.8 | |
| 3rr1_A | 405 | GALD, putative D-galactonate dehydratase; enolase, | 82.76 | |
| 2qkf_A | 280 | 3-deoxy-D-manno-octulosonic acid 8- phosphate SYN; | 82.6 | |
| 1tzz_A | 392 | Hypothetical protein L1841; structural genomics, m | 82.53 | |
| 2qq6_A | 410 | Mandelate racemase/muconate lactonizing enzyme- li | 82.48 | |
| 1h1y_A | 228 | D-ribulose-5-phosphate 3-epimerase; oxidative pent | 82.39 | |
| 1rvg_A | 305 | Fructose-1,6-bisphosphate aldolase; class II aldol | 82.25 | |
| 2i1o_A | 398 | Nicotinate phosphoribosyltransferase; ZIN ION, zin | 82.12 | |
| 3tji_A | 422 | Mandelate racemase/muconate lactonizing enzyme, N | 81.83 | |
| 3ddm_A | 392 | Putative mandelate racemase/muconate lactonizing e | 81.79 | |
| 2e1d_A | 331 | Transaldolase; pentose phosphate pathway, structur | 81.78 | |
| 3sbf_A | 401 | Mandelate racemase / muconate lactonizing enzyme; | 81.51 | |
| 2pcq_A | 283 | Putative dihydrodipicolinate synthase; lyase, lysi | 81.35 | |
| 1geq_A | 248 | Tryptophan synthase alpha-subunit; hyperthermophIl | 81.24 | |
| 2nli_A | 368 | Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid | 81.1 | |
| 3inp_A | 246 | D-ribulose-phosphate 3-epimerase; IDP02542, isomer | 81.09 | |
| 4gbu_A | 400 | NADPH dehydrogenase 1; alpha/beta barrel, enenone | 80.91 | |
| 1ujp_A | 271 | Tryptophan synthase alpha chain; riken structural | 80.69 | |
| 1chr_A | 370 | Chloromuconate cycloisomerase; 3.00A {Ralstonia eu | 80.55 | |
| 3qld_A | 388 | Mandelate racemase/muconate lactonizing protein; s | 80.49 | |
| 1p0k_A | 349 | Isopentenyl-diphosphate delta-isomerase; terpene b | 80.39 | |
| 2vc6_A | 292 | MOSA, dihydrodipicolinate synthase; DHDPS, TIM bar | 80.02 |
| >3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-71 Score=531.18 Aligned_cols=320 Identities=46% Similarity=0.724 Sum_probs=293.3
Q ss_pred CCChHHHHHHHHHhCCccchhhhcCccccchHHHHhHhcccccceeecccCCCCCCCcceeecccccccceeeccccccc
Q 019244 4 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQK 83 (344)
Q Consensus 4 ~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~f~~i~l~pr~l~~~~~vd~st~l~g~~l~~Pi~iapm~~~~ 83 (344)
++|++|||+.||++||+++|+|++||++||.|+++|+.+|++|+|+||+|++++++||+|+|||+++++||+|||+|+++
T Consensus 2 ~~~~~d~~~~A~~~lp~~~~~Y~~~ga~~e~t~~~N~~af~~~~l~prvl~dv~~~d~~t~llG~~~~~P~~iaP~g~~~ 81 (352)
T 3sgz_A 2 LVCLADFKAHAQKQLSKTSWDFIEGEADDGITYSENIAAFKRIRLRPRYLRDMSKVDTRTTIQGQEISAPICISPTAFHS 81 (352)
T ss_dssp CCSHHHHHHHHHHTSCHHHHHHHHCCCTTCHHHHHHHHHHHTCCBCCCCSSCCSSCBCCEEETTEEESSSEEECCCSCGG
T ss_pred CCCHHHHHHHHHHHCCHHHHHHHhcCCcchHHHHHHHHHHHhceeeccccCCCCCCCCceEECCcccCCcceechHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCChhhHHHHHHHHHcCCcc---------------------------ccCCHHHHHHHHHHHHHcCCcEEEeccCCccc
Q 019244 84 MAHPEGEYATARAASAAGTIM---------------------------VYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 136 (344)
Q Consensus 84 ~~~~~~~~~lA~aA~~~g~~~---------------------------~~~d~~~~~~~i~~a~~ag~~~l~~tvd~~~~ 136 (344)
+.||++|.++|+||+++|+++ +++|++.++++++||+++||+++++|+|+|.+
T Consensus 82 l~~~~ge~~~araa~~~gi~~~lSt~ss~s~e~v~~~~~~~~~wfQlY~~~d~~~~~~l~~ra~~aG~~alvlTvD~p~~ 161 (352)
T 3sgz_A 82 IAWPDGEKSTARAAQEANICYVISSYASYSLEDIVAAAPEGFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVL 161 (352)
T ss_dssp GTCTTHHHHHHHHHHHHTCEEEECTTCSSCHHHHHHHSTTCEEEEECCCCSCHHHHHHHHHHHHHTTCCCEEEECSCSSC
T ss_pred hcCccHHHHHHHHHHHcCCCeEeCCCCCCCHHHHHHhccCccceeccccCCCHHHHHHHHHHHHHcCCCEEEEEeCCCCC
Confidence 999999999999999999999 46899999999999999999999999999999
Q ss_pred cccHHHHHhhcCCCCcccccccccccccccccccchhhHHHHhhcCCCCCcHHHHHHHHHhcCCcEEEEeecCHHHHHHH
Q 019244 137 GRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIA 216 (344)
Q Consensus 137 g~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~PvivK~v~~~~~a~~~ 216 (344)
|+|++|+|++|.+|..++.+++..... .. ..........++.++|+.|+++++.+++||++|++.++++|+.+
T Consensus 162 g~R~~d~r~~~~~p~~~~~~~~~~~~~----~~---~~~~~~~~~~d~~~~w~~i~~lr~~~~~PvivK~v~~~e~A~~a 234 (352)
T 3sgz_A 162 GNRRRDKRNQLNLEANILKAALRALKE----EK---PTQSVPVLFPKASFCWNDLSLLQSITRLPIILKGILTKEDAELA 234 (352)
T ss_dssp CCCHHHHHHHHHSCHHHHTTCC----------------------CCCTTCCHHHHHHHHHHCCSCEEEEEECSHHHHHHH
T ss_pred CcchhhhhcCCCCCcccchhhhccccc----cc---ccchhhhhccCCCCCHHHHHHHHHhcCCCEEEEecCcHHHHHHH
Confidence 999999999998887666665532110 00 00111113467889999999999999999999999999999999
Q ss_pred HHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcChH
Q 019244 217 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEK 296 (344)
Q Consensus 217 ~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~ 296 (344)
.++|+|+|+|+||||+++++++++++.|+++++.+++++|||++|||+++.|++|+|++||++|++||+|+|++++.|++
T Consensus 235 ~~~GaD~I~vsn~GG~~~d~~~~~~~~L~~i~~av~~~ipVia~GGI~~g~Dv~kaLalGA~aV~iGr~~l~~l~~~G~~ 314 (352)
T 3sgz_A 235 MKHNVQGIVVSNHGGRQLDEVSASIDALREVVAAVKGKIEVYMDGGVRTGTDVLKALALGARCIFLGRPILWGLACKGED 314 (352)
T ss_dssp HHTTCSEEEECCGGGTSSCSSCCHHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCSEEEESHHHHHHHHHHHHH
T ss_pred HHcCCCEEEEeCCCCCccCCCccHHHHHHHHHHHhCCCCeEEEECCCCCHHHHHHHHHcCCCEEEECHHHHHHHHhcCcH
Confidence 99999999999999999999999999999999988778999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHhhhccccee
Q 019244 297 GVRRVLEMLREEFELAMALSGCRSLKEITRDHIV 330 (344)
Q Consensus 297 ~v~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l~ 330 (344)
++.++++.+++||+.+|.++|+++++||+++.++
T Consensus 315 gv~~~l~~l~~el~~~m~~~G~~~i~el~~~~~~ 348 (352)
T 3sgz_A 315 GVKEVLDILTAELHRCMTLSGCQSVAEISPDLIQ 348 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSBGGGCCGGGBS
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcHHHHhhhcch
Confidence 9999999999999999999999999999988774
|
| >2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-64 Score=495.06 Aligned_cols=330 Identities=56% Similarity=0.914 Sum_probs=294.4
Q ss_pred CCCChHHHHHHHHHhCCccchhhhcCccccchHHHHhHhcccccceeecccCCCCCCCcceeecccccccceeecccccc
Q 019244 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQ 82 (344)
Q Consensus 3 ~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~f~~i~l~pr~l~~~~~vd~st~l~g~~l~~Pi~iapm~~~ 82 (344)
.++|++|||+.||++||+.+|+|++||+++|.|+++|+.+|++|+|+||+|++++++||+|+|||+++++||+|||||++
T Consensus 26 ~~~~~~d~~~~A~~~lp~~~~~y~~~ga~~e~t~~~N~~~f~~i~l~pr~L~~~~~~d~st~i~G~~l~~Pi~iAPmg~~ 105 (392)
T 2nzl_A 26 RLICINDYEQHAKSVLPKSIYDYYRSGANDEETLADNIAAFSRWKLYPRMLRNVAETDLSTSVLGQRVSMPICVGATAMQ 105 (392)
T ss_dssp CCCSHHHHHHHHHHHSCHHHHHHHHCCSTTCHHHHHHHHHHHHSCBCCCCSSCCTTCBCCEEETTEEESSSEEECCCSCG
T ss_pred cCCCHHHHHHHHHhhCCHHHHhhcCCCCCccHHHHHHHHhhheEEeehhhccCCcCCCcceEECCEecCCceEecccccc
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCChhhHHHHHHHHHcCCcc---------------------------ccCCHHHHHHHHHHHHHcCCcEEEeccCCcc
Q 019244 83 KMAHPEGEYATARAASAAGTIM---------------------------VYKDRNVVAQLVRRAERAGFKAIALTVDTPR 135 (344)
Q Consensus 83 ~~~~~~~~~~lA~aA~~~g~~~---------------------------~~~d~~~~~~~i~~a~~ag~~~l~~tvd~~~ 135 (344)
.+.|+++|.++|++|+++|+++ +++|++...+++++++++|++++++|+|+|.
T Consensus 106 ~l~~~~~e~~laraA~~~G~~~~~s~~~s~~le~v~~~~~~~~~~~QLy~~~d~~~~~~~~~ra~~~G~~al~itvd~p~ 185 (392)
T 2nzl_A 106 RMAHVDGELATVRACQSLGTGMMLSSWATSSIEEVAEAGPEALRWLQLYIYKDREVTKKLVRQAEKMGYKAIFVTVDTPY 185 (392)
T ss_dssp GGTSTTHHHHHHHHHHHHTCEEEECTTCSSCHHHHHHHCTTSEEEEEECCBSSHHHHHHHHHHHHHTTCCCEEEECSCSS
T ss_pred ccccchHHHHHHHHHHHcCCCeeccchHHHHHHHHHHhcCCCcEEEEEEecCCHHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence 9999999999999999999999 2368889999999999999999999999999
Q ss_pred ccccHHHHHhhcCCCCcccccccccccc--ccccc-ccchhhHHHHhhcCCCCCcHHHHHHHHHhcCCcEEEEeecCHHH
Q 019244 136 LGRREADIKNRFTLPPFLTLKNFQGLDL--GKMDE-ANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED 212 (344)
Q Consensus 136 ~g~r~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~PvivK~v~~~~~ 212 (344)
.|+|++|++++|.+|..++.+++..... ..... ........++..+.+++++|+.|+++++.+++||++|++.++++
T Consensus 186 ~g~R~~d~r~~~~lp~~~~~~n~~~~~~~~~p~~~~~~g~~~~~~~~~~~d~~~~~~~i~~lr~~~~~PvivKgv~~~e~ 265 (392)
T 2nzl_A 186 LGNRLDDVRNRFKLPPQLRMKNFETSTLSFSPEENFGDDSGLAAYVAKAIDPSISWEDIKWLRRLTSLPIVAKGILRGDD 265 (392)
T ss_dssp CCCCHHHHHHTCCCCTTCCCTTC-----------------CHHHHHHHHBCTTCCHHHHHHHC--CCSCEEEEEECCHHH
T ss_pred ccchhHhHhhccCCccccchhhhhhhhcccCccccccCcchHHHHHhhcCChHHHHHHHHHHHHhhCCCEEEEecCCHHH
Confidence 9999999999998887765555421100 00000 00011235666667888999999999999999999999999999
Q ss_pred HHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhh
Q 019244 213 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAA 292 (344)
Q Consensus 213 a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~ 292 (344)
|+.+.++|+|+|+|+||||++.++++++++.|+++++.+++++|||++|||+++.|++|+|++|||+|++||||++++++
T Consensus 266 A~~a~~aGad~I~vs~~ggr~~~~g~~~~~~l~~v~~av~~~ipVia~GGI~~g~Dv~kalalGAd~V~iGr~~l~~~~~ 345 (392)
T 2nzl_A 266 AREAVKHGLNGILVSNHGARQLDGVPATIDVLPEIVEAVEGKVEVFLDGGVRKGTDVLKALALGAKAVFVGRPIVWGLAF 345 (392)
T ss_dssp HHHHHHTTCCEEEECCGGGTSSTTCCCHHHHHHHHHHHHTTSSEEEECSSCCSHHHHHHHHHTTCSEEEECHHHHHHHHH
T ss_pred HHHHHHcCCCEEEeCCCCCCcCCCCcChHHHHHHHHHHcCCCCEEEEECCCCCHHHHHHHHHhCCCeeEECHHHHHHHHh
Confidence 99999999999999999999999999999999999998876899999999999999999999999999999999999988
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHhCCCCHhhhcccceeec
Q 019244 293 EGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTE 332 (344)
Q Consensus 293 ~G~~~v~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l~~~ 332 (344)
.|++++.++++.+++||+.+|.++|+++++||++..+...
T Consensus 346 ~g~~gv~~~l~~l~~el~~~m~~~G~~~i~el~~~~l~~~ 385 (392)
T 2nzl_A 346 QGEKGVQDVLEILKEEFRLAMALSGCQNVKVIDKTLVRKN 385 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCSBGGGCCGGGBC--
T ss_pred cChHHHHHHHHHHHHHHHHHHHHhCCCcHHHHhhhhhhhC
Confidence 8999999999999999999999999999999999888653
|
| >2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-64 Score=487.81 Aligned_cols=326 Identities=35% Similarity=0.553 Sum_probs=282.0
Q ss_pred CCCCChHHHHHHHHHhCCccchhhhcCccccchHHHHhHhcccccceeecccCCCCCCCcceeecccccccceeeccccc
Q 019244 2 GEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAM 81 (344)
Q Consensus 2 ~~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~f~~i~l~pr~l~~~~~vd~st~l~g~~l~~Pi~iapm~~ 81 (344)
..++|++|||+.||++||+.+|+|+.||+++|.|+++|+.+|++|+|+||+|++++++||+|+|||+++++||+||||++
T Consensus 11 ~~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~N~~~f~~i~l~pr~L~~~~~~d~st~i~G~~l~~Pi~iAPma~ 90 (368)
T 2nli_A 11 IDVVNTYDLEEEASKVVPHGGFNYIAGASGDEWTKRANDRAWKHKLLYPRLAQDVEAPDTSTEILGHKIKAPFIMAPIAA 90 (368)
T ss_dssp CCCSCSHHHHHHHHTTSCHHHHHHHHCCSBTSHHHHHHHHGGGGEEECCCCCCCCSCCCCCEEETTEEESSSEEECCCSC
T ss_pred ccCCCHHHHHHHHHHhCCHHHHhhcccCCCccHHHHHHHHHHhheeeeccccCCCccCCcceEECCEecCCceeecchhh
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCChhhHHHHHHHHHcCCcc---------------------------ccCCHHHHHHHHHHHHHcCCcEEEeccCCc
Q 019244 82 QKMAHPEGEYATARAASAAGTIM---------------------------VYKDRNVVAQLVRRAERAGFKAIALTVDTP 134 (344)
Q Consensus 82 ~~~~~~~~~~~lA~aA~~~g~~~---------------------------~~~d~~~~~~~i~~a~~ag~~~l~~tvd~~ 134 (344)
+++.|++++.++|++|+++|+++ +++|++...+++++++++|++++++|+|+|
T Consensus 91 ~g~~~~~~e~~la~aa~~~G~~~~~s~~~s~~le~v~~~~~~~~~~~QLy~~~d~~~~~~~~~ra~~aG~~ai~it~d~p 170 (368)
T 2nli_A 91 HGLAHTTKEAGTARAVSEFGTIMSISAYSGATFEEISEGLNGGPRWFQIYMAKDDQQNRDILDEAKSDGATAIILTADST 170 (368)
T ss_dssp GGGTCTTHHHHHHHHHHHHTCCEEECTTCSSCHHHHHHHHTTCCEEEEECCBSSHHHHHHHHHHHHHTTCSCEEEESBCC
T ss_pred ccCCCcHHHHHHHHHHHHcCCCEEeechHhHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHHHHCCCCEEEEcCCCC
Confidence 99999999999999999999998 136888899999999999999999999999
Q ss_pred cccccHHHHHhhcCCCCcccccccccccccccccccchhhHHHHhhcCCCCCcHHHHHHHHHhcCCcEEEEeecCHHHHH
Q 019244 135 RLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDAR 214 (344)
Q Consensus 135 ~~g~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~PvivK~v~~~~~a~ 214 (344)
..|+|++|++++|.+| +...++..... . . .....+ .+++++.+++++|+.|+++++.+++||++|++.++++++
T Consensus 171 ~~g~r~~d~~~~~~~p--~~~~~~~~~~~-~-~-~~g~~l-~~~~~~~d~~~~~~~i~~lr~~~~~PvivK~v~~~e~a~ 244 (368)
T 2nli_A 171 VSGNRDRDVKNKFVYP--FGMPIVQRYLR-G-T-AEGMSL-NNIYGASKQKISPRDIEEIAGHSGLPVFVKGIQHPEDAD 244 (368)
T ss_dssp ---CBC--------CC--SCCHHHHHHHT-T-S-GGGC------CTTBCSBCCHHHHHHHHHHSSSCEEEEEECSHHHHH
T ss_pred cccchhHHHhhcccCc--chhhhhhcccc-c-C-CCCchH-HhhhhccCchhhHHHHHHHHHHcCCCEEEEcCCCHHHHH
Confidence 9999999999998777 22223210000 0 0 000111 344555678889999999999999999999999999999
Q ss_pred HHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcC
Q 019244 215 IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEG 294 (344)
Q Consensus 215 ~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G 294 (344)
.+.++|+|+|+|+||||+++++++++++.++++++.+++++|||++|||+++.|++|+|++|||+|++||||++++++.|
T Consensus 245 ~a~~~Gad~I~vs~~ggr~~~~g~~~~~~l~~v~~~v~~~ipVia~GGI~~g~D~~kalalGAd~V~iGr~~l~~~~~~G 324 (368)
T 2nli_A 245 MAIKRGASGIWVSNHGARQLYEAPGSFDTLPAIAERVNKRVPIVFDSGVRRGEHVAKALASGADVVALGRPVLFGLALGG 324 (368)
T ss_dssp HHHHTTCSEEEECCGGGTSCSSCCCHHHHHHHHHHHHTTSSCEEECSSCCSHHHHHHHHHTTCSEEEECHHHHHHHHHHH
T ss_pred HHHHcCCCEEEEcCCCcCCCCCCCChHHHHHHHHHHhCCCCeEEEECCCCCHHHHHHHHHcCCCEEEECHHHHHHHHhcC
Confidence 99999999999999999999999999999999999887689999999999999999999999999999999999998889
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCCHhhhcccceeecc
Q 019244 295 EKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEW 333 (344)
Q Consensus 295 ~~~v~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l~~~~ 333 (344)
++|+.++++.+++||+.+|.++|++++.+|++..+....
T Consensus 325 ~~gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l~~~~ 363 (368)
T 2nli_A 325 WQGAYSVLDYFQKDLTRVMQLTGSQNVEDLKGLDLFDNP 363 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSSHHHHHTCCEEECT
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCcCHHHhccccEeecc
Confidence 999999999999999999999999999999999887654
|
| >1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-63 Score=480.26 Aligned_cols=342 Identities=88% Similarity=1.323 Sum_probs=299.9
Q ss_pred CCCChHHHHHHHHHhCCccchhhhcCccccchHHHHhHhcccccceeecccCCCCCCCcceeecccccccceeecccccc
Q 019244 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQ 82 (344)
Q Consensus 3 ~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~f~~i~l~pr~l~~~~~vd~st~l~g~~l~~Pi~iapm~~~ 82 (344)
+++|++|||+.||++||+.+|+|++||+++|.|+++|+.+|++|+|+||+|++++++||+|+|||+++++||+|||||++
T Consensus 3 ~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~N~~~f~~i~l~pr~l~~~~~~d~~t~i~G~~~~~Pi~iAPmg~~ 82 (370)
T 1gox_A 3 EITNVNEYEAIAKQKLPKMVYDYYASGAEDQWTLAENRNAFSRILFRPRILIDVTNIDMTTTILGFKISMPIMIAPTAMQ 82 (370)
T ss_dssp CCCSTTHHHHHHHHHSCHHHHHHHHCCSTTCHHHHHHHHGGGGEEECCCCSCCCSCCBCCEEETTEEESSSEEECCCSCG
T ss_pred cCCCHHHHHHHHHHhCCHHHHhhhCCCCCccHHHHHHHHHHhhheeeccccCCCCCCCCceEECCcccCCceeEcccchh
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCChhhHHHHHHHHHcCCcc--------------------------ccCCHHHHHHHHHHHHHcCCcEEEeccCCccc
Q 019244 83 KMAHPEGEYATARAASAAGTIM--------------------------VYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 136 (344)
Q Consensus 83 ~~~~~~~~~~lA~aA~~~g~~~--------------------------~~~d~~~~~~~i~~a~~ag~~~l~~tvd~~~~ 136 (344)
.+.|+++|.++|++|+++|+++ +.+|++...+++++++++|++++.+|+|+|..
T Consensus 83 ~l~~~~~e~a~a~aa~~~G~~~~~s~~~~~~ieev~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~ai~it~d~p~~ 162 (370)
T 1gox_A 83 KMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (370)
T ss_dssp GGTCTTHHHHHHHHHHHTTCCEEECTTCSSCHHHHHTTCCCCEEEEECCBSSHHHHHHHHHHHHHTTCCEEEEECSCSSC
T ss_pred hhccchHHHHHHHHHHHcCCCeeccCCCCCCHHHHHhhcCCCceEEEecCCCchHHHHHHHHHHHCCCCEEEEeCCCCcc
Confidence 9999999999999999999998 24688888899999999999999999999999
Q ss_pred cccHHHHHhhcCCCCcccccccccccccccccccchhhHHHHhhcCCCCCcHHHHHHHHHhcCCcEEEEeecCHHHHHHH
Q 019244 137 GRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIA 216 (344)
Q Consensus 137 g~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~PvivK~v~~~~~a~~~ 216 (344)
++|+++++++|.+|...+.+++.................+++++..++.+.|+.|+++++.+++||++|++.++++++.+
T Consensus 163 g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~~~~~i~~l~~~~~~pv~vK~~~~~e~a~~a 242 (370)
T 1gox_A 163 GRREADIKNRFVLPPFLTLKNFEGIDLGKMDKANDSGLSSYVAGQIDRSLSWKDVAWLQTITSLPILVKGVITAEDARLA 242 (370)
T ss_dssp CCCHHHHHTTCCCCTTCCCGGGSSSCCC---------HHHHHHHTBCTTCCHHHHHHHHHHCCSCEEEECCCSHHHHHHH
T ss_pred cccHHHHHhccCCCcccchhhhhhhhhhccccccCccHHHHHHhhcCccchHHHHHHHHHHhCCCEEEEecCCHHHHHHH
Confidence 99999999999888766555542211000000011122356777788889999999999999999999999999999999
Q ss_pred HHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcChH
Q 019244 217 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEK 296 (344)
Q Consensus 217 ~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~ 296 (344)
.++|+|+|+|+||||+++++++++++.+.++++.+++++|||++|||+++.|+.|++++|||+|++||+|++++++.|++
T Consensus 243 ~~~Gad~I~vs~~ggr~~~~~~~~~~~l~~v~~~~~~~ipvia~GGI~~~~D~~k~l~~GAdaV~iGr~~l~~~~~~G~~ 322 (370)
T 1gox_A 243 VQHGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFLDGGVRRGTDVFKALALGAAGVFIGRPVVFSLAAEGEA 322 (370)
T ss_dssp HHTTCSEEEECCGGGTSSTTCCCHHHHHHHHHHHTTTSSCEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHHHHHHHHH
T ss_pred HHcCCCEEEECCCCCccCCCcccHHHHHHHHHHHhCCCCEEEEECCCCCHHHHHHHHHcCCCEEeecHHHHHHHhhccHH
Confidence 99999999999999999999999999999999988778999999999999999999999999999999999998888999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHhhhcccceeeccCCCCCCCCCCC
Q 019244 297 GVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDASLPRPVPRL 344 (344)
Q Consensus 297 ~v~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l~~~~~~~~~~~~~~~ 344 (344)
++.++++.+.+||+.+|.++|+++++||++..+.....++.+..|.+|
T Consensus 323 gv~~~~~~l~~el~~~m~~~G~~~i~el~~~~l~~~~~~~~~~~~~~~ 370 (370)
T 1gox_A 323 GVKKVLQMMRDEFELTMALSGCRSLKEISRSHIAADWDGPSSRAVARL 370 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSBTTTCCGGGEEETTC----------
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHhhhcceeccccccccchhhcC
Confidence 999999999999999999999999999999999887776666665543
|
| >1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-61 Score=468.64 Aligned_cols=329 Identities=43% Similarity=0.757 Sum_probs=288.7
Q ss_pred CCCChHHHHHHHHHhCCccchhhhcCccccchHHHHhHhcccccceeecccCCCCCCCcceeecccccccceeecccccc
Q 019244 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQ 82 (344)
Q Consensus 3 ~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~f~~i~l~pr~l~~~~~vd~st~l~g~~l~~Pi~iapm~~~ 82 (344)
+++|++|||+.||++||+.+|+|++||+++|.|+++|+.+|++|+|+||+|++++++||+|+|||++++.||+||||+++
T Consensus 4 ~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~f~~i~l~pr~L~~~~~~d~st~i~G~~l~~Pv~iap~~~~ 83 (380)
T 1p4c_A 4 NLFNVEDYRKLAQKRLPKMVYDYLEGGAEDEYGVKHNRDVFQQWRFKPKRLVDVSRRSLQAEVLGKRQSMPLLIGPTGLN 83 (380)
T ss_dssp CCSSHHHHHHHHHHHSCHHHHHHHHCCSTTCHHHHHHHHGGGGEEECCCCSCCCSSCBCCEEETTEEESSSEEECCCSCG
T ss_pred cCCCHHHHHHHHHHhCCHHHHHHhCCCCCccHHHHHHHHHHhheeeeccccCCCccCcceeEECCeecCCceEecCcccc
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCChhhHHHHHHHHHcCCcc--------------------------ccCCHHHHHHHHHHHHHcCCcEEEeccCCccc
Q 019244 83 KMAHPEGEYATARAASAAGTIM--------------------------VYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 136 (344)
Q Consensus 83 ~~~~~~~~~~lA~aA~~~g~~~--------------------------~~~d~~~~~~~i~~a~~ag~~~l~~tvd~~~~ 136 (344)
++.|+++|.++|++|+++|+++ +++ ++...+++++++++|++++++|+|+|..
T Consensus 84 ~~~~~~~~~~~a~aa~~~G~~~~vss~s~~~le~i~~~~~~~~~fQly~~~-~~~~~~~i~~a~~aG~~al~vTvd~p~~ 162 (380)
T 1p4c_A 84 GALWPKGDLALARAATKAGIPFVLSTASNMSIEDLARQCDGDLWFQLYVIH-REIAQGMVLKALHTGYTTLVLTTDVAVN 162 (380)
T ss_dssp GGTSTTHHHHHHHHHHHHTCCEEECTTCSSCHHHHHHHCCSCEEEEECCSS-HHHHHHHHHHHHHTTCCEEEEECSCSSC
T ss_pred ccCCCcHHHHHHHHHHHcCCCeecCccccCCHHHHHhccCCCeEEEEEech-HHHHHHHHHHHHHcCCCEEEEeecCccc
Confidence 9999999999999999999998 113 5777889999999999999999999999
Q ss_pred cccHHHHHhhcCCCCcccccccccccccccccccchhhHHHHhhcCCCCCcHHHHHHHHHhcCCcEEEEeecCHHHHHHH
Q 019244 137 GRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIA 216 (344)
Q Consensus 137 g~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~PvivK~v~~~~~a~~~ 216 (344)
++|++|+++++..|...+..++.......+.......+..++....+++++|+.|+++++.+++||++|++.++++++.+
T Consensus 163 g~r~~d~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~ala~~~~~~~~p~~~~~~i~~i~~~~~~Pv~vkgv~t~e~a~~a 242 (380)
T 1p4c_A 163 GYRERDLHNRFKIPPFLTLKNFEGIDLGKMDKANLEMQAALMSRQMDASFNWEALRWLRDLWPHKLLVKGLLSAEDADRC 242 (380)
T ss_dssp CCCHHHHHHTCCCCTTCCCGGGTTCCCSCCSSTTTTTHHHHTSSCCCTTCCHHHHHHHHHHCCSEEEEEEECCHHHHHHH
T ss_pred cchhHHHhcCCCCccccCHHHhhhhhhhccCcccchHHHHHHHhhcCccccHHHHHHHHHhcCCCEEEEecCcHHHHHHH
Confidence 99999999998766544443331000000100011112223333346788999999999999999999999999999999
Q ss_pred HHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcChH
Q 019244 217 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEK 296 (344)
Q Consensus 217 ~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~ 296 (344)
.++|+|+|+|+||||+++++++++++.++++++.+ +.|||++|||+++.|+.|++++||++|++||++++++.+.|++
T Consensus 243 ~~aGad~I~vs~~gg~~~d~~~~~~~~l~~v~~~~--~~pVia~GGI~~~~dv~kal~~GAdaV~iGr~~l~~~~~~g~~ 320 (380)
T 1p4c_A 243 IAEGADGVILSNHGGRQLDCAISPMEVLAQSVAKT--GKPVLIDSGFRRGSDIVKALALGAEAVLLGRATLYGLAARGET 320 (380)
T ss_dssp HHTTCSEEEECCGGGTSCTTCCCGGGTHHHHHHHH--CSCEEECSSCCSHHHHHHHHHTTCSCEEESHHHHHHHHHHHHH
T ss_pred HHcCCCEEEEcCCCCCcCCCCcCHHHHHHHHHHHc--CCeEEEECCCCCHHHHHHHHHhCCcHhhehHHHHHHHHhcCHH
Confidence 99999999999999999999999999999999887 5699999999999999999999999999999999998888999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHhhhcccceeeccC
Q 019244 297 GVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 334 (344)
Q Consensus 297 ~v~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l~~~~~ 334 (344)
++.++++.+.+||+.+|.++|+++++||++..++..+.
T Consensus 321 ~v~~~~~~l~~el~~~m~~~G~~~i~el~~~~l~~~g~ 358 (380)
T 1p4c_A 321 GVDEVLTLLKADIDRTLAQIGCPDITSLSPDYLQNEGV 358 (380)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCBGGGCCGGGEEEC--
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHhccCeEEeccc
Confidence 99999999999999999999999999999999877653
|
| >1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-60 Score=481.03 Aligned_cols=325 Identities=41% Similarity=0.695 Sum_probs=289.5
Q ss_pred CCCChHHHHHHHHHhCCccchhhhcCccccchHHHHhHhcccccceeecccCCCCCCCcceeecccccccceeecccccc
Q 019244 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQ 82 (344)
Q Consensus 3 ~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~f~~i~l~pr~l~~~~~vd~st~l~g~~l~~Pi~iapm~~~ 82 (344)
+++|++|||+.||++||+.+|+|+.||+++|.|+++|+.+|++|+|+||+|++++++||+|+|||+++++||+||||+++
T Consensus 121 ~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~e~t~~~N~~af~~i~l~pr~L~dv~~~d~st~i~G~~l~~Pi~iAPma~~ 200 (511)
T 1kbi_A 121 NIINLYDFEYLASQTLTKQAWAYYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKVDISTDMLGSHVDVPFYVSATALC 200 (511)
T ss_dssp GCCSHHHHHHHHHHHSCHHHHHHHHCCSTTCHHHHHHHHGGGGCEECCCCSCCCSSCBCCEEETTEEESSSEEECCCSCG
T ss_pred ccCCHHHHHHHHHhhCCHHHhhhccCCCCchhHHHHHHHHhhhhccccccccCcccccCccccCCccCCCCeEeccchhc
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCC-hhhHHHHHHHHH--cCCcc-----------------------------ccCCHHHHHHHHHHHHHcCCcEEEec
Q 019244 83 KMAHP-EGEYATARAASA--AGTIM-----------------------------VYKDRNVVAQLVRRAERAGFKAIALT 130 (344)
Q Consensus 83 ~~~~~-~~~~~lA~aA~~--~g~~~-----------------------------~~~d~~~~~~~i~~a~~ag~~~l~~t 130 (344)
++.|+ +++.++|++|++ +|+++ +.+|++..++++++++++|++++++|
T Consensus 201 ~l~~~~~~e~alaraA~~~~~G~~~~~s~~a~~s~e~v~~~~~~~~~~~~~QLy~~~d~~~~~~~~~rae~aG~~al~it 280 (511)
T 1kbi_A 201 KLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEIIEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVT 280 (511)
T ss_dssp GGTCTTTTHHHHHHHHHSSSSCCCEEECTTCSSCHHHHHHTCCCSSCCEEEEECCCSSHHHHHHHHHHHHHHTCSCEEEE
T ss_pred cccChhhHHHHHHHHHHHhCCCeeEEeCCcccCCHHHHHhhcCCCCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 99998 899999999999 99987 14678889999999999999999999
Q ss_pred cCCccccccHHHHHhhcCCCCcccccccccccccccccccchhhHHHHhhcCCCCCcHHHHHHHHHhcCCcEEEEeecCH
Q 019244 131 VDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTA 210 (344)
Q Consensus 131 vd~~~~g~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~PvivK~v~~~ 210 (344)
+|+|++|+|+++++++|..|... .... ..... ....+...++....++.++|+.|+++++.+++||++|++.++
T Consensus 281 vd~p~~g~R~~~~r~g~~~p~~~-~~~~---~g~~~--~~~~g~~~~~~~~~d~~~~~~~i~~lr~~~~~PvivKgv~~~ 354 (511)
T 1kbi_A 281 VDAPSLGQREKDMKLKFSNTKAG-PKAM---KKTNV--EESQGASRALSKFIDPSLTWKDIEELKKKTKLPIVIKGVQRT 354 (511)
T ss_dssp CSCSSCCCCHHHHHHHHTTCC-----------CCCC--SSCCCGGGGCBTTBCTTCCHHHHHHHHHHCSSCEEEEEECSH
T ss_pred CCCCCccccHHHHhccCCCCccc-cccc---ccccc--cccccHHHHHhhccChHhHHHHHHHHHHHhCCcEEEEeCCCH
Confidence 99999999999999998766421 1100 00000 001122234444467788999999999999999999999999
Q ss_pred HHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHc-----cCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchH
Q 019244 211 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT-----QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 285 (344)
Q Consensus 211 ~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~-----~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~ 285 (344)
++|+.+.++|+|+|+|+||||++++.++++++.|+++.+.+ .+++|||++|||+++.|++|+|++|||+|+|||+
T Consensus 355 e~A~~a~~aGad~I~vs~hgG~~~d~~~~~~~~l~~v~~~v~~~~~~~~ipVia~GGI~~g~Dv~kaLalGAdaV~iGr~ 434 (511)
T 1kbi_A 355 EDVIKAAEIGVSGVVLSNHGGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLGRP 434 (511)
T ss_dssp HHHHHHHHTTCSEEEECCTTTTSSTTCCCHHHHHHHHHHHHHTTTCBTTBEEEEESSCCSHHHHHHHHHHTCSEEEECHH
T ss_pred HHHHHHHHcCCCEEEEcCCCCccCCCCCchHHHHHHHHHHHHhhccCCCcEEEEECCCCCHHHHHHHHHcCCCEEEECHH
Confidence 99999999999999999999999999999999999999887 3589999999999999999999999999999999
Q ss_pred HHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHhhhcccceeecc
Q 019244 286 VVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEW 333 (344)
Q Consensus 286 ~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l~~~~ 333 (344)
|++++.+.|++++.++++.+++||+.+|.++|++++.+|++..+....
T Consensus 435 ~l~~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~el~~~~l~~~~ 482 (511)
T 1kbi_A 435 FLYANSCYGRNGVEKAIEILRDEIEMSMRLLGVTSIAELKPDLLDLST 482 (511)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCBGGGCCGGGEECTT
T ss_pred HHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCcHHHHhHHHhhhhh
Confidence 999998889999999999999999999999999999999998886554
|
| >3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-45 Score=354.56 Aligned_cols=274 Identities=20% Similarity=0.316 Sum_probs=211.8
Q ss_pred hcccccceeecccC--CCCCCCcceeecccccccceeecccccccccCChhhHHHHHHHHHcCCccc-------cCCHHH
Q 019244 41 NAFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMV-------YKDRNV 111 (344)
Q Consensus 41 ~~f~~i~l~pr~l~--~~~~vd~st~l~g~~l~~Pi~iapm~~~~~~~~~~~~~lA~aA~~~g~~~~-------~~d~~~ 111 (344)
++||+|+|+|++|+ ++++|||+|+|||+++++||+|+||+++...++++|.+||++|+++|++|+ .++++.
T Consensus 54 ~~fd~i~l~~~~lP~~~~~~vd~st~i~g~~l~~Pi~iapMtgg~~~~~~in~~lA~~a~~~G~~~~vGs~~~~le~~~~ 133 (365)
T 3sr7_A 54 NSFDDIELIHHSLPDYDLAEIDLSTHFAGQDFDFPFYINAMTGGSQKGKEVNEKLAQVADTCGLLFVTGSYSTALKNPDD 133 (365)
T ss_dssp CGGGGEEECCCSSCCSCGGGCCCCEEETTEEESSSEEEECC----CCCHHHHHHHHHHHHHHTCCEEC------------
T ss_pred CCcceEEEECCCCCcCCcccccceEEECCEEccCceEeccccCCCcchhHHHHHHHHHHHHcCCCeecccccccccCccc
Confidence 58999999999995 778999999999999999999999999998888999999999999999992 345554
Q ss_pred HHHH-HHHHHHcCCcEEEeccCCccccccHHHHHhhcCCCCcccccccccccccccccccchhhHHHHhhcCCCCC-cH-
Q 019244 112 VAQL-VRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL-SW- 188 (344)
Q Consensus 112 ~~~~-i~~a~~ag~~~l~~tvd~~~~g~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~- 188 (344)
..+ +.|....++..-.++.+.+. + +. .+.++.+.++.+.. +.+..|+.+++++++++ .|
T Consensus 134 -~~~~v~r~~P~~~~ianig~~~~~----e-~~-----------~~~ve~~~adal~i-hln~~qe~~~p~Gd~~~~~~~ 195 (365)
T 3sr7_A 134 -TSYQVKKSRPHLLLATNIGLDKPY----Q-AG-----------LQAVRDLQPLFLQV-HINLMQELLMPEGEREFRSWK 195 (365)
T ss_dssp ------------CCEEEEEETTSCH----H-HH-----------HHHHHHHCCSCEEE-EECHHHHHTSSSSCCCCHHHH
T ss_pred -cceEehhhCCCCcEEEEeCCCCCH----H-HH-----------HHHHHhcCCCEEEE-eccccccccCCCCCCcHHHHH
Confidence 322 33322222322222322211 0 00 01112222333332 45678999999999998 77
Q ss_pred HHHHHHHHhcCCcEEEEee---cCHHHHHHHHHcCCcEEEEccCCCCCC---------------CCchhhHHHHHHHHHH
Q 019244 189 KDVKWLQTITKLPILVKGV---LTAEDARIAVQAGAAGIIVSNHGARQL---------------DYVPATIMALEEVVKA 250 (344)
Q Consensus 189 ~~i~~i~~~~~~PvivK~v---~~~~~a~~~~~~G~d~I~v~~~gG~~~---------------~~g~~~~~~l~~i~~~ 250 (344)
+.|+++++.+++||++|++ .++++|+.+.++|+|+|+|+|+||+++ +||.|+..+|+++. .
T Consensus 196 ~~I~~l~~~~~~PVivK~vg~g~s~e~A~~l~~aGad~I~V~g~GGt~~a~ie~~r~~~~~~~~~~g~pt~~~L~~v~-~ 274 (365)
T 3sr7_A 196 KHLSDYAKKLQLPFILKEVGFGMDVKTIQTAIDLGVKTVDISGRGGTSFAYIENRRGGNRSYLNQWGQTTAQVLLNAQ-P 274 (365)
T ss_dssp HHHHHHHHHCCSCEEEEECSSCCCHHHHHHHHHHTCCEEECCCBC--------------CGGGTTCSCBHHHHHHHHG-G
T ss_pred HHHHHHHHhhCCCEEEEECCCCCCHHHHHHHHHcCCCEEEEeCCCCcccchhhccccccccccccccccHHHHHHHHH-H
Confidence 5799999999999999998 899999999999999999999999864 78999999998764 4
Q ss_pred ccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHhhhccccee
Q 019244 251 TQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIV 330 (344)
Q Consensus 251 ~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l~ 330 (344)
+.+++|||++|||+++.|++|+|++|||+|++||+|++++.+.|++++.++++.+++||+.+|.++|+++++||++.+++
T Consensus 275 ~~~~ipvia~GGI~~g~Dv~KaLalGAdaV~ig~~~l~a~~~~G~~~v~~~l~~l~~eL~~~m~~~G~~si~eL~~~~~~ 354 (365)
T 3sr7_A 275 LMDKVEILASGGIRHPLDIIKALVLGAKAVGLSRTMLELVEQHSVHEVIAIVNGWKEDLRLIMCALNCQTIAELRNVDYL 354 (365)
T ss_dssp GTTTSEEEECSSCCSHHHHHHHHHHTCSEEEESHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHTTCSSTGGGGGCCEE
T ss_pred hcCCCeEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCcCHHHhccCCEE
Confidence 44589999999999999999999999999999999999998999999999999999999999999999999999999888
Q ss_pred ecc
Q 019244 331 TEW 333 (344)
Q Consensus 331 ~~~ 333 (344)
..+
T Consensus 355 ~~~ 357 (365)
T 3sr7_A 355 LYG 357 (365)
T ss_dssp ECH
T ss_pred Ecc
Confidence 654
|
| >3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-42 Score=332.81 Aligned_cols=277 Identities=20% Similarity=0.261 Sum_probs=221.0
Q ss_pred hcccccceeecccC--CCCCCCcceeecccccccceeecccccccccCChhhHHHHHHHHHcCCccc-------cCCHHH
Q 019244 41 NAFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMV-------YKDRNV 111 (344)
Q Consensus 41 ~~f~~i~l~pr~l~--~~~~vd~st~l~g~~l~~Pi~iapm~~~~~~~~~~~~~lA~aA~~~g~~~~-------~~d~~~ 111 (344)
+.||+|+|+|++|+ ++++|||+|+|||++++.||+|+||+|+.....+.|..||++|+++|+++. +++++.
T Consensus 27 ~~~~~v~l~~~~lp~~~~~~vd~st~~~g~~l~~Pv~ia~MtGgt~~~~~in~~la~~a~~~G~~~~vGs~~~~l~~~~~ 106 (368)
T 3vkj_A 27 TFLNDVILVHQGFPGISFSEINTKTKFFRKEISVPVMVTGMTGGRNELGRINKIIAEVAEKFGIPMGVGSQRVAIEKAEA 106 (368)
T ss_dssp CSGGGEEECCCSSCBSBGGGCBCCEEETTEEESSSEEECCCCCSSHHHHHHHHHHHHHHHHHTCCEECCCCHHHHHCGGG
T ss_pred CCcceEEEEcCCCCccCcccccceeEECCEeccCCeEEecCCCCCchhhHHHHHHHHHHHHhCCCeeeecchhccCCHHH
Confidence 57999999999999 789999999999999999999999998776555789999999999999992 235554
Q ss_pred HHHH--HHHHHHcCCcEEEeccCCccccc--cHHHHHhhcCCCCcccccccccccccccccccchhhHHHHhhcCCCCCc
Q 019244 112 VAQL--VRRAERAGFKAIALTVDTPRLGR--READIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS 187 (344)
Q Consensus 112 ~~~~--i~~a~~ag~~~l~~tvd~~~~g~--r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (344)
.+.+ +++. +.-..+.-++..+++.. -....+ ..++.+..+.+.. +.+.+++.++++++++|.
T Consensus 107 ~~s~~~vr~~--ap~~~~~anlg~~ql~~~~~~~~~~-----------~av~~~~a~al~I-hln~~~~~~~p~g~~~~~ 172 (368)
T 3vkj_A 107 RESFAIVRKV--APTIPIIANLGMPQLVKGYGLKEFQ-----------DAIQMIEADAIAV-HLNPAQEVFQPEGEPEYQ 172 (368)
T ss_dssp SHHHHHHHHH--CSSSCEEEEEEGGGGGTTCCHHHHH-----------HHHHHTTCSEEEE-ECCHHHHHHSSSCCCBCB
T ss_pred HhhHHHHHHh--CcCcceecCcCeeecCCCCCHHHHH-----------HHHHHhcCCCeEE-EecchhhhhCCCCCchhh
Confidence 4443 3321 22112333333333311 111111 1111122223332 456789999988888885
Q ss_pred ---HHHHHHHHHhcCCcEEEEee---cCHHHHHHHHHcCCcEEEEccCCC---------CC--------------CCCch
Q 019244 188 ---WKDVKWLQTITKLPILVKGV---LTAEDARIAVQAGAAGIIVSNHGA---------RQ--------------LDYVP 238 (344)
Q Consensus 188 ---~~~i~~i~~~~~~PvivK~v---~~~~~a~~~~~~G~d~I~v~~~gG---------~~--------------~~~g~ 238 (344)
++.|+++++.+++||++|++ .++++|+.+.++|+|+|+|+|||| |+ .+||.
T Consensus 173 ~~~~~~i~~i~~~~~vPVivK~vG~g~s~~~A~~l~~aGad~I~V~g~GGt~~~~iE~~R~~~~~~~~~~~~~~~~~~g~ 252 (368)
T 3vkj_A 173 IYALEKLRDISKELSVPIIVKESGNGISMETAKLLYSYGIKNFDTSGQGGTNWIAIEMIRDIRRGNWKAESAKNFLDWGV 252 (368)
T ss_dssp THHHHHHHHHHTTCSSCEEEECSSSCCCHHHHHHHHHTTCCEEECCCBTSBCHHHHHHHHHHHTTCTHHHHHHHTTTCSC
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHhCCCCEEEEeCCCCCcccchhhhhcccccccchhhccccccccc
Confidence 67899999999999999988 899999999999999999999999 32 35688
Q ss_pred hhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCC
Q 019244 239 ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGC 318 (344)
Q Consensus 239 ~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~ 318 (344)
|+..+|.++++.++ ++|||++|||+++.|++|+|++|||+|++||||++++. .|++++.++++.+.+||+.+|.++|+
T Consensus 253 pt~~~l~~v~~~~~-~ipvia~GGI~~~~d~~kal~lGA~~v~ig~~~l~~~~-~G~~~v~~~l~~l~~eL~~~m~~~G~ 330 (368)
T 3vkj_A 253 PTAASIMEVRYSVP-DSFLVGSGGIRSGLDAAKAIALGADIAGMALPVLKSAI-EGKESLEQFFRKIIFELKAAMMLTGS 330 (368)
T ss_dssp BHHHHHHHHHHHST-TCEEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHHHH-HCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHcC-CCcEEEECCCCCHHHHHHHHHcCCCEEEEcHHHHHHHh-cChHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999998874 69999999999999999999999999999999999865 68999999999999999999999999
Q ss_pred CCHhhhcccceeecc
Q 019244 319 RSLKEITRDHIVTEW 333 (344)
Q Consensus 319 ~~i~~l~~~~l~~~~ 333 (344)
++++||++.+++..+
T Consensus 331 ~~i~el~~~~l~~~~ 345 (368)
T 3vkj_A 331 KDVDALKKTSIVILG 345 (368)
T ss_dssp CBHHHHHTCCEEECH
T ss_pred CCHHHhccCCEEech
Confidence 999999998887653
|
| >1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-43 Score=335.60 Aligned_cols=291 Identities=23% Similarity=0.239 Sum_probs=209.8
Q ss_pred hhhhcCccccchHHHHhHhcccccceeecccC--CCCCCCcceeecccccccceeecccccccccCChhhHHHHHHHHHc
Q 019244 23 FDYYASGAEDQWTLQENRNAFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAA 100 (344)
Q Consensus 23 ~~y~~~ga~~~~t~~~n~~~f~~i~l~pr~l~--~~~~vd~st~l~g~~l~~Pi~iapm~~~~~~~~~~~~~lA~aA~~~ 100 (344)
.+|+..+.+++.|+++|+.+|++|+|+||+|+ +++++||+|+|+|++++.||+||||+++......+|.++|++|+++
T Consensus 8 ~~hi~~~~~~~~~~~~~~~~f~~~~l~p~~l~~~~~~~~d~~~~i~g~~l~~P~~iapm~g~~~~~~~~~~~la~~a~~~ 87 (332)
T 1vcf_A 8 RKHLEACLEGEVAYQKTTTGLEGFRLRYQALAGLALSEVDLTTPFLGKTLKAPFLIGAMTGGEENGERINLALAEAAEAL 87 (332)
T ss_dssp ---------------CCCCSGGGEEECCCTTCCCCGGGCCCCEEETTEEESSSEEECCCC---CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcccccchhhhhhcEEehhhCCCCCCCCCCcceEECCcccCCceEEeccccCCcchhHHHHHHHHHHHHc
Confidence 47889999999999999999999999999999 7789999999999999999999999864322223458999999999
Q ss_pred CCccccCCH-HHHH-----HHHHHHHHcCCcEEEeccCCccccccHHHHHhhcCCCCcccccccccccccccccccchhh
Q 019244 101 GTIMVYKDR-NVVA-----QLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGL 174 (344)
Q Consensus 101 g~~~~~~d~-~~~~-----~~i~~a~~ag~~~l~~tvd~~~~g~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 174 (344)
|+++...+- ...+ ...+ .+. ..+|.|.+++++..+..++. .......++....+.+. .+.+..
T Consensus 88 G~~~~~~~~~~~le~~~~~~~~q-l~~-------~~~d~pv~~~~~~~q~~~~~--~~~~~~a~~~~~~~a~~-i~~n~~ 156 (332)
T 1vcf_A 88 GVGMMLGSGRILLERPEALRSFR-VRK-------VAPKALLIANLGLAQLRRYG--RDDLLRLVEMLEADALA-FHVNPL 156 (332)
T ss_dssp TCEEEEEECHHHHHCTTTHHHHC-CTT-------TCSSSCEEEEEEGGGGGTCC--HHHHHHHHHHHTCSEEE-EECCHH
T ss_pred CCCEEeCCchhcccCCCccceEE-eec-------cCCCceeecccChhhhhccC--hHHHHHHHhhcCCCcee-eccchH
Confidence 999932211 1111 1111 110 12577877777643322110 00000111111111111 123345
Q ss_pred HHHHhhcCCCCC--cHHHHHHHHHhcCCcEEEEee---cCHHHHHHHHHcCCcEEEEccCCC---------CC-------
Q 019244 175 AAYVAGQIDRSL--SWKDVKWLQTITKLPILVKGV---LTAEDARIAVQAGAAGIIVSNHGA---------RQ------- 233 (344)
Q Consensus 175 ~~~~~~~~~~~~--~~~~i~~i~~~~~~PvivK~v---~~~~~a~~~~~~G~d~I~v~~~gG---------~~------- 233 (344)
+++++ .++.++ .|+.++++++ +++||++|++ .++++++.+.++|+|+|+|+|||| ++
T Consensus 157 ~~~~~-~~~~~~~~~~~~i~~vr~-~~~Pv~vK~v~~g~~~e~a~~~~~~G~d~I~vs~~ggt~~~~~~~~r~~~~~~~~ 234 (332)
T 1vcf_A 157 QEAVQ-RGDTDFRGLVERLAELLP-LPFPVMVKEVGHGLSREAALALRDLPLAAVDVAGAGGTSWARVEEWVRFGEVRHP 234 (332)
T ss_dssp HHHHT-TSCCCCTTHHHHHHHHCS-CSSCEEEECSSSCCCHHHHHHHTTSCCSEEECCCBTSCCHHHHHHTC--------
T ss_pred HHHhc-CCCccHHHHHHHHHHHHc-CCCCEEEEecCCCCCHHHHHHHHHcCCCEEEeCCCCCCcchhHHHhhccccchhh
Confidence 66665 455554 3789999999 9999999988 899999999999999999999988 54
Q ss_pred --CCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcChHHHHHHHHHHHHHHHH
Q 019244 234 --LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFEL 311 (344)
Q Consensus 234 --~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~el~~ 311 (344)
.++++++++.|.++++.++ ++|||++|||+++.|++|+|++|||+|++||+|++++ +.|++++.++++.+.+||+.
T Consensus 235 ~~~~~g~~~~~~l~~v~~~~~-~ipvia~GGI~~~~d~~kal~~GAd~V~igr~~l~~~-~~G~~gv~~~~~~l~~el~~ 312 (332)
T 1vcf_A 235 ELCEIGIPTARAILEVREVLP-HLPLVASGGVYTGTDGAKALALGADLLAVARPLLRPA-LEGAERVAAWIGDYLEELRT 312 (332)
T ss_dssp CCTTCSCBHHHHHHHHHHHCS-SSCEEEESSCCSHHHHHHHHHHTCSEEEECGGGHHHH-TTCHHHHHHHHHHHHHHHHH
T ss_pred hHhhccccHHHHHHHHHHhcC-CCeEEEECCCCCHHHHHHHHHhCCChHhhhHHHHHHH-hccHHHHHHHHHHHHHHHHH
Confidence 6789999999999998874 6999999999999999999999999999999999987 78999999999999999999
Q ss_pred HHHHhCCCCHhhhcccc
Q 019244 312 AMALSGCRSLKEITRDH 328 (344)
Q Consensus 312 ~m~~~G~~~i~~l~~~~ 328 (344)
+|.++|+++++||++..
T Consensus 313 ~m~~~G~~~i~el~~~~ 329 (332)
T 1vcf_A 313 ALFAIGARNPKEARGRV 329 (332)
T ss_dssp HHHHHTCSSGGGGTTCE
T ss_pred HHHHhCCCCHHHHhhhh
Confidence 99999999999998754
|
| >2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-38 Score=311.96 Aligned_cols=287 Identities=19% Similarity=0.263 Sum_probs=205.7
Q ss_pred HHhCCccchhhhcCccccchHHHHhHhcccccceeec-ccCCCCCCCcceeecccccccceeecccccccccCChhhHHH
Q 019244 15 KEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPR-ILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYAT 93 (344)
Q Consensus 15 ~~~l~~~~~~y~~~ga~~~~t~~~n~~~f~~i~l~pr-~l~~~~~vd~st~l~g~~l~~Pi~iapm~~~~~~~~~~~~~l 93 (344)
..+||+..|+|+.+|++++ ++|..+||+|+|+|+ .+.+++++||+|+|+|++++.||++|||++ +.++ ++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~---~~~~~~fd~v~l~p~~~~~~~~~vdlst~l~g~~l~~Pii~Apm~g--~~~~----~~ 83 (393)
T 2qr6_A 13 ENLYFQGMRDHVEIGIGRE---ARRTYSLDDISVVSSRRTRSSKDVDTTWHIDAYKFDLPFMNHPSDA--LASP----EF 83 (393)
T ss_dssp -CHHHHHHHHEEEEETTEE---EECCCCGGGEEECCCSCCCCGGGCBCCEEETTEEESSSEEECCCTT--TCCH----HH
T ss_pred ccccccchHHHHhcccccc---cccCCChhhEEEccCCCCCChhHCCceeEEcccccCCCeEeCCCCC--cccH----HH
Confidence 3578899999999999999 468999999999998 778999999999999999999999999983 3443 47
Q ss_pred HHHHHHcCCccc-----------------------------------------cC-CHHHHHHHHHHHHHcCCcEEEecc
Q 019244 94 ARAASAAGTIMV-----------------------------------------YK-DRNVVAQLVRRAERAGFKAIALTV 131 (344)
Q Consensus 94 A~aA~~~g~~~~-----------------------------------------~~-d~~~~~~~i~~a~~ag~~~l~~tv 131 (344)
|++++++|.+++ .. |++...+++++++++|+.+++ .+
T Consensus 84 a~a~a~~G~~gvl~~~~~~~~~~~~~~~~eeia~~~~~~d~~~g~~~~~q~~~~~~d~~~~~~~i~~~~~~g~~v~~-~v 162 (393)
T 2qr6_A 84 VIEMGKQGGLGVINAEGLWGRHADLDEAIAKVIAAYEEGDQAAATRTLQELHAAPLDTELLSERIAQVRDSGEIVAV-RV 162 (393)
T ss_dssp HHHHHHTTSBCEEETTSSTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSCCEE-EE
T ss_pred HHHHHHcCCcEEEEecceecccCCchhHHHHHHHHHHhcCCCccchhhhhcccccCCHHHHHHHHHHHhhcCCeEEE-Ee
Confidence 777777776551 11 555555566666666665432 11
Q ss_pred CCccccccHHHHHhhcCCCCcccccccccccccccccccchh-hHHHHhhcCCCCCcHHHHHHHHHhcCCcEEEEeecCH
Q 019244 132 DTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSG-LAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTA 210 (344)
Q Consensus 132 d~~~~g~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~i~~~~~~PvivK~v~~~ 210 (344)
. +.+..+....+. ....+.+..+ .+. .+++ ..+...|+.++++++.+++||++|++.++
T Consensus 163 ~----~~~~~e~a~~~~-----------~agad~i~i~-~~~~~~~~----~~~~~~~~~i~~l~~~~~~pvi~ggi~t~ 222 (393)
T 2qr6_A 163 S----PQNVREIAPIVI-----------KAGADLLVIQ-GTLISAEH----VNTGGEALNLKEFIGSLDVPVIAGGVNDY 222 (393)
T ss_dssp C----TTTHHHHHHHHH-----------HTTCSEEEEE-CSSCCSSC----CCC-----CHHHHHHHCSSCEEEECCCSH
T ss_pred C----CccHHHHHHHHH-----------HCCCCEEEEe-CCcccccc----CCCcccHHHHHHHHHhcCCCEEECCcCCH
Confidence 1 112222211110 0000000000 000 0111 12234788899999999999999999999
Q ss_pred HHHHHHHHcCCcEEEEcc--CCCCCC-CCchhhHHHHHHHHHH-------ccCC-CcEEEecCCCCHHHHHHHHHcCCCE
Q 019244 211 EDARIAVQAGAAGIIVSN--HGARQL-DYVPATIMALEEVVKA-------TQGR-IPVFLDGGVRRGTDVFKALALGASG 279 (344)
Q Consensus 211 ~~a~~~~~~G~d~I~v~~--~gG~~~-~~g~~~~~~l~~i~~~-------~~~~-~~via~GGIr~g~dv~kalalGAd~ 279 (344)
++++.+.++|+|+|+|++ |+++++ .+|+++++.|+++++. ++++ +|||++|||+++.|++|+|++||++
T Consensus 223 e~a~~~~~~Gad~i~vg~Gg~~~~~~~~~g~~~~~~l~~v~~~~~~~~~~~~~~~ipvia~GGI~~~~dv~kalalGA~~ 302 (393)
T 2qr6_A 223 TTALHMMRTGAVGIIVGGGENTNSLALGMEVSMATAIADVAAARRDYLDETGGRYVHIIADGSIENSGDVVKAIACGADA 302 (393)
T ss_dssp HHHHHHHTTTCSEEEESCCSCCHHHHTSCCCCHHHHHHHHHHHHHHHHHHHTSCCCEEEECSSCCSHHHHHHHHHHTCSE
T ss_pred HHHHHHHHcCCCEEEECCCcccccccCCCCCChHHHHHHHHHHHHHhHhhcCCcceEEEEECCCCCHHHHHHHHHcCCCE
Confidence 999999999999999976 445444 3578999999988876 4333 9999999999999999999999999
Q ss_pred EEEchHH-----------HHHhhhcCh---HH--------------HHHHH----------HHHHHHHHHHHHHhCCCCH
Q 019244 280 IFIGRPV-----------VYSLAAEGE---KG--------------VRRVL----------EMLREEFELAMALSGCRSL 321 (344)
Q Consensus 280 V~ig~~~-----------l~~~~~~G~---~~--------------v~~~l----------~~l~~el~~~m~~~G~~~i 321 (344)
|++||+| +|++++.|. +| +.+++ +.|++||+..|.++|++++
T Consensus 303 V~iG~~~l~~~es~~~~~~~g~~~~~~~~~~Gv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~el~~~m~~~G~~~i 382 (393)
T 2qr6_A 303 VVLGSPLARAEEAAGKGYFWPAVAAHPRFPRGVVTESVDLDEAAPSLEQILHGPSTMPWGVENFEGGLKRALAKCGYTDL 382 (393)
T ss_dssp EEECGGGGGSTTCTTTTEECCGGGGCSSSCCCCCEECC----CCCCHHHHHHCCCSCTTSSSCHHHHHHHHHHHHTCSBH
T ss_pred EEECHHHHcCCCCCCceEEEecccCcccCCCccccccccccccchhHHHHhccchhHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 9999996 555554432 22 23333 3678999999999999999
Q ss_pred hhhcccceee
Q 019244 322 KEITRDHIVT 331 (344)
Q Consensus 322 ~~l~~~~l~~ 331 (344)
+||++.+++.
T Consensus 383 ~el~~~~~~~ 392 (393)
T 2qr6_A 383 KSFQKVSLHV 392 (393)
T ss_dssp HHHTTCCEEE
T ss_pred HHHhhccEec
Confidence 9999988764
|
| >1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-37 Score=298.38 Aligned_cols=273 Identities=22% Similarity=0.293 Sum_probs=200.6
Q ss_pred hHhcccccceeecccC--CCCCCCcceeecccccccceeeccccccc-ccCChhhHHHHHHHHHcCCccc-------cCC
Q 019244 39 NRNAFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQK-MAHPEGEYATARAASAAGTIMV-------YKD 108 (344)
Q Consensus 39 n~~~f~~i~l~pr~l~--~~~~vd~st~l~g~~l~~Pi~iapm~~~~-~~~~~~~~~lA~aA~~~g~~~~-------~~d 108 (344)
++.+|++|+|+|++|+ +++++||+|+|+|++++.||++|||++.. ..+++++.++|++|.++|+++. .++
T Consensus 21 ~~~~f~~~~l~p~~l~~~~~~~~d~~~~i~g~~~~~P~~iApm~g~~~~~~~~~~~~~a~aa~~~G~~~~~~~~~~~l~~ 100 (349)
T 1p0k_A 21 RETGLDDITFVHVSLPDLALEQVDISTKIGELSSSSPIFINAMTGGGGKLTYEINKSLARAASQAGIPLAVGSQMSALKD 100 (349)
T ss_dssp CCCSGGGEEECCCSCCCCCGGGCBCCEEETTEEESCSEEEECCCCSCHHHHHHHHHHHHHHHHHHTCCEECCCCTTTTTC
T ss_pred ccCccceEEEEccccCCCCcccCCceeEECCcccCCceEEcCccccchhhhhHHHHHHHHHHHHcCCcEEeccchhcccC
Confidence 3568999999999998 77899999999999999999999995433 3446678999999999999971 234
Q ss_pred HHHHHHHHHHHHHcCCcEEEeccCCccccccHH-----HHHhhcCCCCcccccccccccccccccccchhhHHHHhhcCC
Q 019244 109 RNVVAQLVRRAERAGFKAIALTVDTPRLGRREA-----DIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQID 183 (344)
Q Consensus 109 ~~~~~~~i~~a~~ag~~~l~~tvd~~~~g~r~~-----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (344)
++.. ...+..++.. ++.|.++++.. ..... +.....+.+..+ .+..++..++.++
T Consensus 101 ~~~~-~~~~~~~~~~-------~~~pv~~~i~~~~~~~~~~~~-----------~~~~gad~i~i~-~~~~~~~~~~~~~ 160 (349)
T 1p0k_A 101 PSER-LSYEIVRKEN-------PNGLIFANLGSEATAAQAKEA-----------VEMIGANALQIH-LNVIQEIVMPEGD 160 (349)
T ss_dssp HHHH-HHHHHHHHHC-------SSSCEEEEEETTCCHHHHHHH-----------HHHTTCSEEEEE-ECTTTTC------
T ss_pred cccc-cceehhhhhC-------CCceeEEeecCCCCHHHHHHH-----------HHhcCCCeEEec-ccchhhhcCCCCC
Confidence 4321 1222222211 24454444321 11100 000001111111 1111223344456
Q ss_pred CCC--cHHHHHHHHHhcCCcEEEEee---cCHHHHHHHHHcCCcEEEEccCCC---------CC-------CCCchhhHH
Q 019244 184 RSL--SWKDVKWLQTITKLPILVKGV---LTAEDARIAVQAGAAGIIVSNHGA---------RQ-------LDYVPATIM 242 (344)
Q Consensus 184 ~~~--~~~~i~~i~~~~~~PvivK~v---~~~~~a~~~~~~G~d~I~v~~~gG---------~~-------~~~g~~~~~ 242 (344)
+++ .++.++++++.+++||++|++ .++++++.+.++|+|+|+++|||| ++ .++++++.+
T Consensus 161 ~~~~~~~~~i~~vr~~~~~Pv~vK~~~~~~~~~~a~~a~~~Gad~I~v~~~ggt~~~~~e~~r~~~~~~~~~~~g~~~~~ 240 (349)
T 1p0k_A 161 RSFSGALKRIEQICSRVSVPVIVKEVGFGMSKASAGKLYEAGAAAVDIGGYGGTNFSKIENLRRQRQISFFNSWGISTAA 240 (349)
T ss_dssp --CTTHHHHHHHHHHHCSSCEEEEEESSCCCHHHHHHHHHHTCSEEEEEC---------------CCGGGGTTCSCCHHH
T ss_pred cchHHHHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHcCCCEEEEcCCCCcchhhHHHhhcccchhhhhccCccHHH
Confidence 666 357899999999999999997 889999999999999999999998 43 467889999
Q ss_pred HHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHh
Q 019244 243 ALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLK 322 (344)
Q Consensus 243 ~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~~~i~ 322 (344)
.|.++++.+ .++|||++|||+++.|+.|++++|||+|++||+|++...+.|++++.++++.+.+||+.+|.++|+++++
T Consensus 241 ~l~~v~~~~-~~ipvia~GGI~~~~d~~k~l~~GAd~V~iG~~~l~~~~~~g~~~~~~~~~~~~~~l~~~m~~~G~~~i~ 319 (349)
T 1p0k_A 241 SLAEIRSEF-PASTMIASGGLQDALDVAKAIALGASCTGMAGHFLKALTDSGEEGLLEEIQLILEELKLIMTVLGARTIA 319 (349)
T ss_dssp HHHHHHHHC-TTSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCBHH
T ss_pred HHHHHHHhc-CCCeEEEECCCCCHHHHHHHHHcCCCEEEEcHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 999998876 5799999999999999999999999999999999998877788999999999999999999999999999
Q ss_pred hhcccceeec
Q 019244 323 EITRDHIVTE 332 (344)
Q Consensus 323 ~l~~~~l~~~ 332 (344)
|+++.+++..
T Consensus 320 el~~~~~~~~ 329 (349)
T 1p0k_A 320 DLQKAPLVIK 329 (349)
T ss_dssp HHTTCCEEEC
T ss_pred HHhhCCeecc
Confidence 9999988764
|
| >1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-37 Score=293.71 Aligned_cols=268 Identities=19% Similarity=0.208 Sum_probs=195.7
Q ss_pred HHHHhHhcccccceeeccc--CCCCCCCcceeecccccccceeecccccccccCChhhHHHHHHHHHcC-Ccc-ccCCHH
Q 019244 35 TLQENRNAFSRILFRPRIL--IDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAG-TIM-VYKDRN 110 (344)
Q Consensus 35 t~~~n~~~f~~i~l~pr~l--~~~~~vd~st~l~g~~l~~Pi~iapm~~~~~~~~~~~~~lA~aA~~~g-~~~-~~~d~~ 110 (344)
-..+|..+||+|+|+|+++ .+++++||+|+|+|++++.||++|||++.. +..+|+++.+.| +.+ ..++++
T Consensus 8 ~~~~~~~~fd~v~l~p~~~~~~~~~~vdl~t~i~g~~l~~Pi~~a~mag~s------~~~la~a~~~~gg~g~~~~~~~~ 81 (336)
T 1ypf_A 8 HHMGNVFDYEDIQLIPAKCIVNSRSECDTTVTLGKHKFKLPVVPANMQTII------DERIATYLAENNYFYIMHRFQPE 81 (336)
T ss_dssp ----CCCCGGGEEECCCCCCCSSGGGCBCCEEETTEEESSSEEECSSTTTC------CHHHHHHHHHTTCCCCCCCSSGG
T ss_pred ccccccCCcceEEEecccCCCCCcccCcceEEECCEEecCcEEECCCCCCC------hHHHHHHHHhCCCEEEecCCCCH
Confidence 3568999999999999995 688999999999999999999999998643 245777655554 444 556777
Q ss_pred HHHHHHHHHHHcCCcEEEeccCCccccccHHHHHhhcCC-CCcccccccccccccccccccchhhHHHHhhcCCCCCcHH
Q 019244 111 VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTL-PPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK 189 (344)
Q Consensus 111 ~~~~~i~~a~~ag~~~l~~tvd~~~~g~r~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (344)
..+++++++++.|+. ++++ ++.++.+.+....+ ..+ ...+.+. .+. ..+++...|+
T Consensus 82 ~~~~~i~~~~~~g~~---v~v~---~g~~~~~~~~a~~~~~~g--------~~~~~i~---i~~------~~G~~~~~~~ 138 (336)
T 1ypf_A 82 KRISFIRDMQSRGLI---ASIS---VGVKEDEYEFVQQLAAEH--------LTPEYIT---IDI------AHGHSNAVIN 138 (336)
T ss_dssp GHHHHHHHHHHTTCC---CEEE---ECCSHHHHHHHHHHHHTT--------CCCSEEE---EEC------SSCCSHHHHH
T ss_pred HHHHHHHHHHhcCCe---EEEe---CCCCHHHHHHHHHHHhcC--------CCCCEEE---EEC------CCCCcHHHHH
Confidence 788899999887752 2333 34444443321000 000 0000000 000 0123445788
Q ss_pred HHHHHHHhcCCcEEEEe-ecCHHHHHHHHHcCCcEEEEccCCCCCCC------Cchh--hHHHHHHHHHHccCCCcEEEe
Q 019244 190 DVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSNHGARQLD------YVPA--TIMALEEVVKATQGRIPVFLD 260 (344)
Q Consensus 190 ~i~~i~~~~~~PvivK~-v~~~~~a~~~~~~G~d~I~v~~~gG~~~~------~g~~--~~~~l~~i~~~~~~~~~via~ 260 (344)
.|+++++.++.|+++|+ +.++++|+.+.++|+|+|+++||||++.+ ++.+ +++.|+++++.+ ++|||++
T Consensus 139 ~i~~lr~~~~~~~vi~G~v~s~e~A~~a~~aGad~Ivvs~hgG~~~~~~~~~~~g~~g~~~~~l~~v~~~~--~ipVIa~ 216 (336)
T 1ypf_A 139 MIQHIKKHLPESFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAA--SKPIIAD 216 (336)
T ss_dssp HHHHHHHHCTTSEEEEEEECSHHHHHHHHHHTCSEEEECSSCSTTCHHHHHHSCSSTTCHHHHHHHHHHTC--SSCEEEE
T ss_pred HHHHHHHhCCCCEEEECCcCCHHHHHHHHHcCCCEEEEecCCCceeecccccCcCCchhHHHHHHHHHHHc--CCcEEEe
Confidence 99999999976777777 89999999999999999999999998754 3445 789999998877 8999999
Q ss_pred cCCCCHHHHHHHHHcCCCEEEEchHHH--------------------HHhhhcChHHHH-----------------HHHH
Q 019244 261 GGVRRGTDVFKALALGASGIFIGRPVV--------------------YSLAAEGEKGVR-----------------RVLE 303 (344)
Q Consensus 261 GGIr~g~dv~kalalGAd~V~ig~~~l--------------------~~~~~~G~~~v~-----------------~~l~ 303 (344)
|||+++.|++|+|++||++|++||+|+ |++++.|++++. ++++
T Consensus 217 GGI~~g~Dv~kalalGAdaV~iGr~~l~t~Es~~~~~~~~g~~~k~~~g~~~~~~~g~~~~~~g~~~~~~~~g~~~~~~~ 296 (336)
T 1ypf_A 217 GGIRTNGDVAKSIRFGATMVMIGSLFAGHEESPGETIEKDGKLYKEYFGSASEFQKGEKKNVEGKKMFVEHKGSLEDTLI 296 (336)
T ss_dssp SCCCSTHHHHHHHHTTCSEEEESGGGTTCTTSSSCCC-----------------------CTTSCCSSSSCCCCHHHHHH
T ss_pred CCCCCHHHHHHHHHcCCCEEEeChhhhccccCCCceeeeCCeEeeeeecccchhhccCccccccceeeecccccHHHHHH
Confidence 999999999999999999999999999 888877777655 8999
Q ss_pred HHHHHHHHHHHHhCCCCHhhhcccceeecc
Q 019244 304 MLREEFELAMALSGCRSLKEITRDHIVTEW 333 (344)
Q Consensus 304 ~l~~el~~~m~~~G~~~i~~l~~~~l~~~~ 333 (344)
.+++||+..|.++|+++++||++..++...
T Consensus 297 ~l~~el~~~m~~~G~~~i~el~~~~~~~~~ 326 (336)
T 1ypf_A 297 EMEQDLQSSISYAGGTKLDSIRTVDYVVVK 326 (336)
T ss_dssp HHHHHHHHHHHHTTSSBGGGGGGCCEEECS
T ss_pred HHHHHHHHHHHHhCcccHHHhCcCCEEEEc
Confidence 999999999999999999999988776653
|
| >2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-34 Score=274.44 Aligned_cols=267 Identities=18% Similarity=0.215 Sum_probs=187.7
Q ss_pred HHHhHhcccccceeecccC-CC-CCCCcceeec-----ccccccceeecccccccccCChhhHHHHHHHHHcCCccc-cC
Q 019244 36 LQENRNAFSRILFRPRILI-DV-SKIDMNTTVL-----GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMV-YK 107 (344)
Q Consensus 36 ~~~n~~~f~~i~l~pr~l~-~~-~~vd~st~l~-----g~~l~~Pi~iapm~~~~~~~~~~~~~lA~aA~~~g~~~~-~~ 107 (344)
+++|..+||+|.|+|+.+. +. +++||+|+|+ ++++++||+++||++. .+.+||++++++|...+ ..
T Consensus 15 ~~~~~~~fddv~l~p~~~~~~~~~~vdl~t~l~~~~~~~~~l~~PIi~ApM~~~------~~~~lA~Ava~~Gglg~i~~ 88 (351)
T 2c6q_A 15 VPRGSLDFKDVLLRPKRSTLKSRSEVDLTRSFSFRNSKQTYSGVPIIAANMDTV------GTFEMAKVLCKFSLFTAVHK 88 (351)
T ss_dssp ----CCCGGGEEECCCCBCCCCGGGCBCCEEEECTTTCCEEEECCEEECSSTTT------SCHHHHHHHHHTTCEEECCT
T ss_pred cccCCCCcceEEEECCCCCCCccccceeEEEeccccCcCccccCCEEECCCCCC------CcHHHHHHHHHCCCEEEEcC
Confidence 5778899999999999985 67 7999999999 9999999999999852 35689999999997652 22
Q ss_pred --CHHHHHHHHHHHHHcCCcEEEeccCCccccccHHHHHhhcCCCCcccccccccc-cccccccccchhhHHHHhhcCCC
Q 019244 108 --DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGL-DLGKMDEANDSGLAAYVAGQIDR 184 (344)
Q Consensus 108 --d~~~~~~~i~~a~~ag~~~l~~tvd~~~~g~r~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 184 (344)
+.+.....+++. ......+.+.+ +....+.... ...++.. ..+.+..+ ...+++
T Consensus 89 ~~s~e~~~~~i~~~-p~~l~~v~~~~-----g~~~~~~~~~--------~~l~~~~~g~~~i~i~---------~~~g~~ 145 (351)
T 2c6q_A 89 HYSLVQWQEFAGQN-PDCLEHLAASS-----GTGSSDFEQL--------EQILEAIPQVKYICLD---------VANGYS 145 (351)
T ss_dssp TCCHHHHHHHHHHC-GGGCTTEEEEE-----CSSHHHHHHH--------HHHHHHCTTCCEEEEE---------CSCTTB
T ss_pred CCCHHHHHHHHhhC-chhhheeEeec-----CCChHHHHHH--------HHHHhccCCCCEEEEE---------ecCCCc
Confidence 223322223220 00111111111 1111000000 0000000 00000000 001222
Q ss_pred CCcHHHHHHHHHhc-CCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCC-----CC-CCchhhHHHHHHHHHHccC-CCc
Q 019244 185 SLSWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR-----QL-DYVPATIMALEEVVKATQG-RIP 256 (344)
Q Consensus 185 ~~~~~~i~~i~~~~-~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~-----~~-~~g~~~~~~l~~i~~~~~~-~~~ 256 (344)
...|+.|+++++.+ ++||++|.+.++++|+.+.++|+|+|+|+++||+ +. .++.|++.+|.++.+.+.. ++|
T Consensus 146 ~~~~~~i~~lr~~~~~~~vi~g~v~t~e~A~~a~~aGaD~I~v~~g~G~~~~~r~~~g~~~p~~~~l~~v~~~~~~~~ip 225 (351)
T 2c6q_A 146 EHFVEFVKDVRKRFPQHTIMAGNVVTGEMVEELILSGADIIKVGIGPGSVCTTRKKTGVGYPQLSAVMECADAAHGLKGH 225 (351)
T ss_dssp HHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHTTCSEEEECSSCSTTBCHHHHHCBCCCHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHhCCCEEEECCCCCcCcCccccCCCCccHHHHHHHHHHHHhhcCCc
Confidence 33678999999999 8999999999999999999999999999987763 22 3467888899888776532 799
Q ss_pred EEEecCCCCHHHHHHHHHcCCCEEEEchHHH--------------------HHhhhcC--------------hHH-----
Q 019244 257 VFLDGGVRRGTDVFKALALGASGIFIGRPVV--------------------YSLAAEG--------------EKG----- 297 (344)
Q Consensus 257 via~GGIr~g~dv~kalalGAd~V~ig~~~l--------------------~~~~~~G--------------~~~----- 297 (344)
||++|||+++.|++|||++||++|++|++|+ |++++.| ++|
T Consensus 226 vIa~GGI~~g~di~kAlalGA~~V~vG~~fl~~~Es~~~~~~~~g~~~k~~~g~~~~~a~~~~~g~~~~~~~~~g~~~~~ 305 (351)
T 2c6q_A 226 IISDGGCSCPGDVAKAFGAGADFVMLGGMLAGHSESGGELIERDGKKYKLFYGMSSEMAMKKYAGGVAEYRASEGKTVEV 305 (351)
T ss_dssp EEEESCCCSHHHHHHHHHTTCSEEEESTTTTTBTTSCSCEEEETTEEEEEEECTTBHHHHHHHSSSCCTTCCCCBCEEEE
T ss_pred EEEeCCCCCHHHHHHHHHcCCCceeccHHHhcCccCcchhhhhcCeeeeeccccccHhhhhcccccccccccccceEEEe
Confidence 9999999999999999999999999999997 6665433 366
Q ss_pred -----HHHHHHHHHHHHHHHHHHhCCCCHhhhcccceee
Q 019244 298 -----VRRVLEMLREEFELAMALSGCRSLKEITRDHIVT 331 (344)
Q Consensus 298 -----v~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l~~ 331 (344)
+.++++.|+.||+..|.++|+++++||++.....
T Consensus 306 ~~~g~v~~~~~~l~~~l~~~m~~~G~~~i~~l~~~~~~v 344 (351)
T 2c6q_A 306 PFKGDVEHTIRDILGGIRSTCTYVGAAKLKELSRRTTFI 344 (351)
T ss_dssp ECCBCHHHHHHHHHHHHHHHHHHHTCSBGGGHHHHCCEE
T ss_pred eccCcHHHHHHHHHHHHHHHHHHcCCCCHHHHhhCCcEE
Confidence 9999999999999999999999999998775444
|
| >3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-30 Score=250.02 Aligned_cols=254 Identities=17% Similarity=0.241 Sum_probs=176.2
Q ss_pred hcccccceeecccCCCC--CCC--cceeecccccccceeecccccccccCChhhHHHHHHHHHcCCccccCCHHHHHHHH
Q 019244 41 NAFSRILFRPRILIDVS--KID--MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMVYKDRNVVAQLV 116 (344)
Q Consensus 41 ~~f~~i~l~pr~l~~~~--~vd--~st~l~g~~l~~Pi~iapm~~~~~~~~~~~~~lA~aA~~~g~~~~~~d~~~~~~~i 116 (344)
.+||+|.|+|+.+.+.+ ++| |+|+|+|++++.||++|||. +.++.+||++++++|.+++.......+++.
T Consensus 8 ~~fddv~l~P~~~~~~~r~~vd~~~~t~l~g~~l~~Pii~ApM~------~vte~~lA~A~a~~Gg~gvi~~~~s~ee~~ 81 (361)
T 3r2g_A 8 ITFDDVLLVPSYNHHESRRVVETTSTDRLGKLTLNLPVISANMD------TITESNMANFMHSKGAMGALHRFMTIEENI 81 (361)
T ss_dssp CCGGGEEECCCCCCSCTTCCCCCCEECTTSSCEESSCEEECCST------TTCSHHHHHHHHHTTCEEBCCSCSCHHHHH
T ss_pred cccceEEEECCCCCCCccccccceeeEEECCEEcCCCEEECCCC------CchHHHHHHHHHHcCCCEEEeCCCCHHHHH
Confidence 47999999999998766 766 45599999999999999993 457889999999999887322111122333
Q ss_pred HHHHHcCCcEEEeccCCccccccHHHHHhhcCCCCcccccccccccccccccccchhhHHHHhhcCCCCCcHHHHHHHHH
Q 019244 117 RRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQT 196 (344)
Q Consensus 117 ~~a~~ag~~~l~~tvd~~~~g~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~ 196 (344)
+..++..... ...+. .++...... ..+.....+.+..+. +.+++...|+.|+++++
T Consensus 82 ~~i~~~~~~~-~~~~g-----~~~~~~e~~---------~~a~~aGvdvI~id~---------a~G~~~~~~e~I~~ir~ 137 (361)
T 3r2g_A 82 QEFKKCKGPV-FVSVG-----CTENELQRA---------EALRDAGADFFCVDV---------AHAHAKYVGKTLKSLRQ 137 (361)
T ss_dssp HHHHTCCSCC-BEEEC-----SSHHHHHHH---------HHHHHTTCCEEEEEC---------SCCSSHHHHHHHHHHHH
T ss_pred HHHhhcceEE-EEEcC-----CCHHHHHHH---------HHHHHcCCCEEEEeC---------CCCCcHhHHHHHHHHHH
Confidence 3333322110 01111 111110000 000000000000000 01122235789999999
Q ss_pred hc-CCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCC------CCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHH
Q 019244 197 IT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQL------DYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDV 269 (344)
Q Consensus 197 ~~-~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~------~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv 269 (344)
.+ ++||++|.+.|+++|+.+.++|+|+|+|++++|+.. .++.|++..+.++++.. . |||++|||+++.|+
T Consensus 138 ~~~~~~Vi~G~V~T~e~A~~a~~aGaD~I~Vg~g~G~~~~tr~~~g~g~p~l~aI~~~~~~~--~-PVIAdGGI~~~~di 214 (361)
T 3r2g_A 138 LLGSRCIMAGNVATYAGADYLASCGADIIKAGIGGGSVCSTRIKTGFGVPMLTCIQDCSRAD--R-SIVADGGIKTSGDI 214 (361)
T ss_dssp HHTTCEEEEEEECSHHHHHHHHHTTCSEEEECCSSSSCHHHHHHHCCCCCHHHHHHHHTTSS--S-EEEEESCCCSHHHH
T ss_pred hcCCCeEEEcCcCCHHHHHHHHHcCCCEEEEcCCCCcCccccccCCccHHHHHHHHHHHHhC--C-CEEEECCCCCHHHH
Confidence 98 799999999999999999999999999998888753 23567888888876544 2 99999999999999
Q ss_pred HHHHHcCCCEEEEchHHHHH---------------------hhh-----------------cChH-------HHHHHHHH
Q 019244 270 FKALALGASGIFIGRPVVYS---------------------LAA-----------------EGEK-------GVRRVLEM 304 (344)
Q Consensus 270 ~kalalGAd~V~ig~~~l~~---------------------~~~-----------------~G~~-------~v~~~l~~ 304 (344)
.|+|++|||+|++||+|+-. |++ +|.+ .+.+++.+
T Consensus 215 ~kALa~GAd~V~iGr~f~~t~Espg~~~~~~~g~~~k~y~Gm~s~~~~~~~~~~~~~~~~~eG~~~~v~~~g~~~~~~~~ 294 (361)
T 3r2g_A 215 VKALAFGADFVMIGGMLAGSAPTPGEVFQKDDGSKVKRYRGMASREAQEAFLGQMHEWKTAEGVATEVPFKENPDGIIAD 294 (361)
T ss_dssp HHHHHTTCSEEEESGGGTTBTTSSSCEEECTTSCEEEEESCCHHHHHHHHHTTCCSTTCCSCCCCEEEECBCCHHHHHHH
T ss_pred HHHHHcCCCEEEEChHHhCCccCCceeEEecCCeEEEEEecCCCcchhhhhhccccccccCCcceeecCCCCCHHHHHHH
Confidence 99999999999999998532 111 1111 37899999
Q ss_pred HHHHHHHHHHHhCCCCHhhhccc
Q 019244 305 LREEFELAMALSGCRSLKEITRD 327 (344)
Q Consensus 305 l~~el~~~m~~~G~~~i~~l~~~ 327 (344)
|...|+..|.++|+.+|+||++.
T Consensus 295 ~~~glr~~m~y~G~~~i~~l~~~ 317 (361)
T 3r2g_A 295 IIGGLRSGLTYAGADSISELQRK 317 (361)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHT
T ss_pred HHHHHHHHhhhcCcccHHHHHhC
Confidence 99999999999999999999654
|
| >1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=3.4e-28 Score=238.71 Aligned_cols=285 Identities=18% Similarity=0.241 Sum_probs=179.6
Q ss_pred HhcccccceeecccC-CCCCCCcceeec-ccccccceeecccccccccCChhhHHHHHHHHHcCCcc-cc--CCHHHHHH
Q 019244 40 RNAFSRILFRPRILI-DVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM-VY--KDRNVVAQ 114 (344)
Q Consensus 40 ~~~f~~i~l~pr~l~-~~~~vd~st~l~-g~~l~~Pi~iapm~~~~~~~~~~~~~lA~aA~~~g~~~-~~--~d~~~~~~ 114 (344)
..+||+|+|+|+.+. +++++||+|+|+ |++++.||+++||++. .+. .+|.+++++|... +. .+.+....
T Consensus 9 ~~~fd~v~l~p~~~~~~~~~vdlst~l~~g~~l~~Pii~Apm~~~----~~~--ela~a~a~aGglg~i~~~~s~e~~~~ 82 (404)
T 1eep_A 9 ALTFDDVSLIPRKSSVLPSEVSLKTQLTKNISLNIPFLSSAMDTV----TES--QMAIAIAKEGGIGIIHKNMSIEAQRK 82 (404)
T ss_dssp CCCGGGEEECCCCCCSCGGGCCCCEESSSSCEESSSEEECCCTTT----CSH--HHHHHHHHHTSEEEECSSSCHHHHHH
T ss_pred CCCcccEEEccCCCCcCccccccceeccCCcccCCCEEeCCCCCC----CCH--HHHHHHHHCCCEEEECCCCCHHHHHH
Confidence 357999999999986 789999999999 9999999999999862 233 4555577777655 32 34444444
Q ss_pred HHHHHHHcCC-cEE------------EeccCCccccc--cHHHHHhhcCCCCcc--------ccccccccccccccc--c
Q 019244 115 LVRRAERAGF-KAI------------ALTVDTPRLGR--READIKNRFTLPPFL--------TLKNFQGLDLGKMDE--A 169 (344)
Q Consensus 115 ~i~~a~~ag~-~~l------------~~tvd~~~~g~--r~~~~~~~~~~~~g~--------~~~~~~~~~~~~~~~--~ 169 (344)
.+++.++... ..+ .++.+.. .+. ..++.......|... ...++... .+.... .
T Consensus 83 ~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~~-~~~~~~a~~ 160 (404)
T 1eep_A 83 EIEKVKTYKFQKTINTNGDTNEQKPEIFTAKQH-LEKSDAYKNAEHKEDFPNACKDLNNKLRVGAAVSID-IDTIERVEE 160 (404)
T ss_dssp HHHHHHTCC---------------------------------------CCTTCCBCTTSCBCCEEEECSC-TTHHHHHHH
T ss_pred HHHHHHhhccCCCceeccccccccccccccCCC-CCHHHHHHHHHHhhhcchhhhhcccCceEEEEeCCC-hhHHHHHHH
Confidence 4444333220 000 0000000 000 000111000122100 00111100 000000 0
Q ss_pred cchhhHHHH---hhcCCCCCcHHHHHHHHHhc-CCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCC------CCCchh
Q 019244 170 NDSGLAAYV---AGQIDRSLSWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ------LDYVPA 239 (344)
Q Consensus 170 ~~~~~~~~~---~~~~~~~~~~~~i~~i~~~~-~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~------~~~g~~ 239 (344)
........+ ...+++...|+.++++++.+ ++||+++.+.+.++++.+.++|+|+|+++.++|+. ..++.+
T Consensus 161 ~~~~G~d~i~i~~~~g~~~~~~e~i~~ir~~~~~~pviv~~v~~~~~a~~a~~~Gad~I~vg~~~G~~~~~~~~~~~g~p 240 (404)
T 1eep_A 161 LVKAHVDILVIDSAHGHSTRIIELIKKIKTKYPNLDLIAGNIVTKEAALDLISVGADCLKVGIGPGSICTTRIVAGVGVP 240 (404)
T ss_dssp HHHTTCSEEEECCSCCSSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHTTTCSEEEECSSCSTTSHHHHHHCCCCC
T ss_pred HHHCCCCEEEEeCCCCChHHHHHHHHHHHHHCCCCeEEEcCCCcHHHHHHHHhcCCCEEEECCCCCcCcCccccCCCCcc
Confidence 000000001 11234445688999999999 89999999999999999999999999996555531 124566
Q ss_pred hHHHHHHHHHHcc-CCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHH--------------------HHhhh------
Q 019244 240 TIMALEEVVKATQ-GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV--------------------YSLAA------ 292 (344)
Q Consensus 240 ~~~~l~~i~~~~~-~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l--------------------~~~~~------ 292 (344)
+++.+.++.+.+. .++|||++|||+++.|+.|++++|||+|++||+|+ +++..
T Consensus 241 ~~~~l~~v~~~~~~~~ipVia~GGI~~~~d~~~ala~GAd~V~iG~~~l~~~e~~~~~~~~~g~~~k~~~g~~~~g~~~~ 320 (404)
T 1eep_A 241 QITAICDVYEACNNTNICIIADGGIRFSGDVVKAIAAGADSVMIGNLFAGTKESPSEEIIYNGKKFKSYVGMGSISAMKR 320 (404)
T ss_dssp HHHHHHHHHHHHTTSSCEEEEESCCCSHHHHHHHHHHTCSEEEECHHHHTBTTSSSCEEEETTEEEEC------------
T ss_pred hHHHHHHHHHHHhhcCceEEEECCCCCHHHHHHHHHcCCCHHhhCHHHhcCCCCCcchhhhCCeEEeecCCCCCHHHHhh
Confidence 7888888887653 37999999999999999999999999999999994 44332
Q ss_pred -------------------cChHH-------HHHHHHHHHHHHHHHHHHhCCCCHhhhcccceeec
Q 019244 293 -------------------EGEKG-------VRRVLEMLREEFELAMALSGCRSLKEITRDHIVTE 332 (344)
Q Consensus 293 -------------------~G~~~-------v~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l~~~ 332 (344)
+|.++ |.++++.|.+||+..|.++|+++++||++..+..+
T Consensus 321 g~~~~~~~g~~~~~~~l~~~g~~~~v~~~~~v~~~~~~l~~el~~~m~~~G~~~i~~l~~~~~~~~ 386 (404)
T 1eep_A 321 GSKSRYFQLENNEPKKLVPEGIEGMVPYSGKLKDILTQLKGGLMSGMGYLGAATISDLKINSKFVK 386 (404)
T ss_dssp ------------------------CEECCBCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHSCCEEE
T ss_pred ccccchhcccccccccccCceeEEeccCCccHHHHHHHHHHHHHHHHHHhCCCCHHHHhhcCcEEE
Confidence 23333 88999999999999999999999999998766543
|
| >1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.8e-27 Score=254.63 Aligned_cols=282 Identities=19% Similarity=0.148 Sum_probs=194.6
Q ss_pred hHhcccccceeecccC--CCCCCCcceeecccccccceeecccccccccCChhhHHHHHHHHHcCCccc----cCCHHHH
Q 019244 39 NRNAFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMV----YKDRNVV 112 (344)
Q Consensus 39 n~~~f~~i~l~pr~l~--~~~~vd~st~l~g~~l~~Pi~iapm~~~~~~~~~~~~~lA~aA~~~g~~~~----~~d~~~~ 112 (344)
....|+++.+.+..++ +++++|+++ .+..||+++||+++.++ ++++.+||+||+++|+.+. ..+++..
T Consensus 821 ~~~~~~dl~~~~~~l~~i~~~ev~~~~-----~I~~Pf~isaMS~GalS-~ea~~aLA~Aa~~aGg~~~tGeGg~~pe~~ 894 (1479)
T 1ea0_A 821 PPMQLRDLLELRSTKAPVPVDEVESIT-----AIRKRFITPGMSMGALS-PEAHGTLNVAMNRIGAKSDSGEGGEDPARF 894 (1479)
T ss_dssp CCCSGGGGEEECCSSCCCCGGGSCCHH-----HHHTTEEEEECCBTTBC-HHHHHHHHHHHHHTTCEEECCTTCCCGGGS
T ss_pred CCCchhhhhhccCCCCCCCcccccccc-----cccCCeEecCccccccC-HHHHHHHHHHHHHcCCeeEcCCCccCHHHh
Confidence 3457999999988876 456788777 56899999999988654 6789999999999999882 2233321
Q ss_pred HHHHHHHHHcCC-cEEEeccCCccccccHHHHHhh----cCCCCccccccccccccccccc-----ccchhhHHHHhhcC
Q 019244 113 AQLVRRAERAGF-KAIALTVDTPRLGRREADIKNR----FTLPPFLTLKNFQGLDLGKMDE-----ANDSGLAAYVAGQI 182 (344)
Q Consensus 113 ~~~i~~a~~ag~-~~l~~tvd~~~~g~r~~~~~~~----~~~~~g~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 182 (344)
... .. ..... ....++ ...+|.....+.+. ..+.+|..+...+.+....+.. ...+..++.+++.+
T Consensus 895 ~~~-~~-g~~~~~~IrQ~a--sg~FGVn~~~l~~a~~ieIKigQGAKpG~GG~Lp~~kv~~~IA~~R~~~~Gv~lisP~~ 970 (1479)
T 1ea0_A 895 RPD-KN-GDNWNSAIKQVA--SGRFGVTAEYLNQCRELEIKVAQGAKPGEGGQLPGFKVTEMIARLRHSTPGVMLISPPP 970 (1479)
T ss_dssp SBC-TT-SCBCCCSEEEEC--SSCTTCCHHHHTSCSEEEEECCCTTSTTTCCEECGGGCCHHHHHHHTCCTTCCEECCSS
T ss_pred hhc-cc-cchhhhhhhhhc--CCCCCcChHHccccchHHHHHhccCCCCcCCCCCHHHHHHHHHHHcCCCCCCCccCCCC
Confidence 100 00 00011 112222 22334332222210 1112222221111121111110 12233345556666
Q ss_pred CCCC-cHH----HHHHHHHhc-CCcEEEEeec---CHHHHHHHHHcCCcEEEEccCC-CCC-------CCCchhhHHHHH
Q 019244 183 DRSL-SWK----DVKWLQTIT-KLPILVKGVL---TAEDARIAVQAGAAGIIVSNHG-ARQ-------LDYVPATIMALE 245 (344)
Q Consensus 183 ~~~~-~~~----~i~~i~~~~-~~PvivK~v~---~~~~a~~~~~~G~d~I~v~~~g-G~~-------~~~g~~~~~~l~ 245 (344)
+.++ +++ .|+++++.+ ++||++|++. ..++|+.+.++|||+|+|+|++ |+. .++|.|+..+|+
T Consensus 971 ~~d~~s~edl~~~I~~Lk~~~~~~PV~VKlv~~~gi~~~A~~a~~AGAD~IvVsG~eGGTgasp~~~~~~~G~Pt~~aL~ 1050 (1479)
T 1ea0_A 971 HHDIYSIEDLAQLIYDLKQINPDAKVTVKLVSRSGIGTIAAGVAKANADIILISGNSGGTGASPQTSIKFAGLPWEMGLS 1050 (1479)
T ss_dssp CTTCSSHHHHHHHHHHHHHHCTTCEEEEEEECCTTHHHHHHHHHHTTCSEEEEECTTCCCSSEETTHHHHSCCCHHHHHH
T ss_pred CcCcCCHHHHHHHHHHHHHhCCCCCEEEEEcCCCChHHHHHHHHHcCCcEEEEcCCCCCCCCCchhhhcCCchhHHHHHH
Confidence 6665 453 589999988 7999999985 3678999999999999999984 432 246788999999
Q ss_pred HHHHHc-----cCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhh---------------------------c
Q 019244 246 EVVKAT-----QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAA---------------------------E 293 (344)
Q Consensus 246 ~i~~~~-----~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~---------------------------~ 293 (344)
++.+.+ ++++|||++|||+++.|++|+++|||++|++||+||++++| .
T Consensus 1051 ev~~al~~~glr~~VpVIAdGGIrtG~DVakALaLGAdaV~iGTafL~a~gc~~~r~Ch~~~CP~Gvatqdp~l~~~~~g 1130 (1479)
T 1ea0_A 1051 EVHQVLTLNRLRHRVRLRTDGGLKTGRDIVIAAMLGAEEFGIGTASLIAMGCIMVRQCHSNTCPVGVCVQDDKLRQKFVG 1130 (1479)
T ss_dssp HHHHHHHTTTCTTTSEEEEESSCCSHHHHHHHHHTTCSEEECCHHHHHHHTCCCCCCTTTTCCTTSSSCCCTTGGGSCCC
T ss_pred HHHHHHHHcCCCCCceEEEECCCCCHHHHHHHHHcCCCeeeEcHHHHHHHHHHHHhhccCCCCCceeEEeCHHHHhhcCC
Confidence 998875 34799999999999999999999999999999999998754 3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhCCCCHhhhc-cccee
Q 019244 294 GEKGVRRVLEMLREEFELAMALSGCRSLKEIT-RDHIV 330 (344)
Q Consensus 294 G~~~v~~~l~~l~~el~~~m~~~G~~~i~~l~-~~~l~ 330 (344)
|.++|.++++.+.+||+.+|..+|+++++||. +.++.
T Consensus 1131 g~e~V~n~l~~l~~ELr~~Ma~lG~~si~eL~g~~~ll 1168 (1479)
T 1ea0_A 1131 TPEKVVNLFTFLAEEVREILAGLGFRSLNEVIGRTDLL 1168 (1479)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCSCSGGGTTCGGGE
T ss_pred chHHHHHHHHHHHHHHHHHHHHhCCCCHHHHhCchhee
Confidence 67899999999999999999999999999994 33443
|
| >1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=6.8e-26 Score=246.15 Aligned_cols=285 Identities=18% Similarity=0.126 Sum_probs=194.7
Q ss_pred hcccccceeecccC--CCCCCCcceeecccccccceeecccccccccCChhhHHHHHHHHHcCCccc----cCCHHHHHH
Q 019244 41 NAFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMV----YKDRNVVAQ 114 (344)
Q Consensus 41 ~~f~~i~l~pr~l~--~~~~vd~st~l~g~~l~~Pi~iapm~~~~~~~~~~~~~lA~aA~~~g~~~~----~~d~~~~~~ 114 (344)
..|+++.+.+..++ +++++|+++ .+..||++++|+++.++ ++++.+||.||+++|+.+. ..+++....
T Consensus 840 ~~~r~l~~~~~~~~~i~~~ev~~~~-----~I~~Pfii~aMS~GslS-~ea~~aLA~Aas~aGg~~~tGeGg~~pe~~~~ 913 (1520)
T 1ofd_A 840 TALRDLLDFNADQPAISLEEVESVE-----SIVKRFCTGGMSLGALS-REAHETLAIAMNRLGAKSNSGEGGEDVVRYLT 913 (1520)
T ss_dssp CSGGGGEEECCSSCCCCGGGSCCHH-----HHHTTEECCCBCTTTSC-HHHHHHHHHHHHHHTCBCEECTTCCCGGGGSC
T ss_pred cchhhhccccCCCCCCCchhhcccc-----cccCceEecCcCccccc-HHHHHHHHHHHHHcCCceEeCCCCCCHHHHHh
Confidence 46899998887775 346777666 56899999999988654 5789999999999999882 234433210
Q ss_pred HHH--------HH-----HHcCC--cEEEeccCCccccccHHHHHhh--c--CCCCccccccccccccccccc-----cc
Q 019244 115 LVR--------RA-----ERAGF--KAIALTVDTPRLGRREADIKNR--F--TLPPFLTLKNFQGLDLGKMDE-----AN 170 (344)
Q Consensus 115 ~i~--------~a-----~~ag~--~~l~~tvd~~~~g~r~~~~~~~--~--~~~~g~~~~~~~~~~~~~~~~-----~~ 170 (344)
-++ .+ ...|- ...+..+....+|.......+. + .+.+|..+...+.+....+.. ..
T Consensus 914 eir~~~~~~~~~~p~~~~~~nG~~~~~~I~Ql~sg~FGVn~~~l~~ad~IeIKi~QGAKpG~GG~Lp~~kV~~~iA~~R~ 993 (1520)
T 1ofd_A 914 LDDVDSEGNSPTLPHLHGLQNGDTANSAIKQIASGRFGVTPEYLMSGKQLEIKMAQGAKPGEGGQLPGKKVSEYIAMLRR 993 (1520)
T ss_dssp CCCCCTTSCCTTSTTCCSCCTTCCCCCSEEEECTTCTTCCHHHHHHCSEEEEECCCTTSTTSCCEECGGGCCHHHHHHHT
T ss_pred hhccccccccccccccccccCcchHHHHHHHhcCCCCccChhhccchHHHHHHHhccCCCCCCCCCCHHHHHHHHHHHcC
Confidence 000 00 00010 0112222233344432222210 1 122222221111222111110 11
Q ss_pred chhhHHHHhhcCCCCC-cH----HHHHHHHHhc-CCcEEEEeec---CHHHHHHHHHcCCcEEEEccCC-CCC-------
Q 019244 171 DSGLAAYVAGQIDRSL-SW----KDVKWLQTIT-KLPILVKGVL---TAEDARIAVQAGAAGIIVSNHG-ARQ------- 233 (344)
Q Consensus 171 ~~~~~~~~~~~~~~~~-~~----~~i~~i~~~~-~~PvivK~v~---~~~~a~~~~~~G~d~I~v~~~g-G~~------- 233 (344)
.+..++.+++.+++++ ++ +.|+++++.+ ++||++|++. ..++|+.+.++|||+|+|+|++ |+.
T Consensus 994 ~~~Gv~lisP~~~~d~~s~edl~~~I~~Lk~~~~~~PV~VKlv~~~gi~~~A~~a~kAGAD~IvVsG~eGGTgasp~~~~ 1073 (1520)
T 1ofd_A 994 SKPGVTLISPPPHHDIYSIEDLAQLIYDLHQINPEAQVSVKLVAEIGIGTIAAGVAKANADIIQISGHDGGTGASPLSSI 1073 (1520)
T ss_dssp SCTTCCEECCSSCTTCSSHHHHHHHHHHHHHHCTTSEEEEEEECSTTHHHHHHHHHHTTCSEEEEECTTCCCSSEEHHHH
T ss_pred CCCCCCeeCCCCCcCcCCHHHHHHHHHHHHHhCCCCCEEEEecCCCChHHHHHHHHHcCCCEEEEeCCCCccCCCcchhh
Confidence 2233445666666666 44 4589999988 8999999985 3678999999999999999985 432
Q ss_pred CCCchhhHHHHHHHHHHc-----cCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhh----------------
Q 019244 234 LDYVPATIMALEEVVKAT-----QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAA---------------- 292 (344)
Q Consensus 234 ~~~g~~~~~~l~~i~~~~-----~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~---------------- 292 (344)
.++|.|+..+|+++.+.+ ++++|||++|||+++.|++|+++|||++|++||+||++++|
T Consensus 1074 ~~~GlPt~~aL~ev~~al~~~glr~~IpVIAdGGIrtG~DVakALaLGAdaV~iGTafL~algc~~~r~Ch~~~CP~Gva 1153 (1520)
T 1ofd_A 1074 KHAGSPWELGVTEVHRVLMENQLRDRVLLRADGGLKTGWDVVMAALMGAEEYGFGSIAMIAEGCIMARVCHTNNCPVGVA 1153 (1520)
T ss_dssp HHBCCCHHHHHHHHHHHHHHTTCGGGCEEEEESSCCSHHHHHHHHHTTCSEEECSHHHHHHTTCCCCCCGGGTCCTTSSS
T ss_pred cCCchhHHHHHHHHHHHHHhcCCCCCceEEEECCCCCHHHHHHHHHcCCCeeEEcHHHHHHHHHHHHHhccCCCCCceeE
Confidence 246788999999998765 34799999999999999999999999999999999998754
Q ss_pred -----------cChHHHHHHHHHHHHHHHHHHHHhCCCCHhhhc-ccceee
Q 019244 293 -----------EGEKGVRRVLEMLREEFELAMALSGCRSLKEIT-RDHIVT 331 (344)
Q Consensus 293 -----------~G~~~v~~~l~~l~~el~~~m~~~G~~~i~~l~-~~~l~~ 331 (344)
.|+++|.++++.+.+||+.+|..+|+++++||. +.++..
T Consensus 1154 tqdp~L~~~~~gg~e~V~n~l~~l~~ELr~~Ma~lG~~si~eL~gr~dll~ 1204 (1520)
T 1ofd_A 1154 TQQERLRQRFKGVPGQVVNFFYFIAEEVRSLLAHLGYRSLDDIIGRTDLLK 1204 (1520)
T ss_dssp CCCHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHTCSCGGGTTTCGGGEE
T ss_pred eeCHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHhCcceEEe
Confidence 268899999999999999999999999999995 444443
|
| >3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-24 Score=210.25 Aligned_cols=255 Identities=19% Similarity=0.250 Sum_probs=177.2
Q ss_pred hcccccceeecccCC--CCCCCcceeec-ccccccceeecccccccccCChhhHHHHHHHHHcCC-cccc--CCHHHHHH
Q 019244 41 NAFSRILFRPRILID--VSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGT-IMVY--KDRNVVAQ 114 (344)
Q Consensus 41 ~~f~~i~l~pr~l~~--~~~vd~st~l~-g~~l~~Pi~iapm~~~~~~~~~~~~~lA~aA~~~g~-~~~~--~d~~~~~~ 114 (344)
..||++.|+|+ +++ .++||++|+|. +..+..||+++||.+.. +..||.+.++.|. .++. .+.+...+
T Consensus 13 ~~fddv~l~p~-~~~~~~~~vdl~t~l~~~~~l~~Pii~apM~~vt------~~~lA~avA~~GGlgii~~~~s~e~~~~ 85 (361)
T 3khj_A 13 LTFEDILLVPN-YSEVLPREVSLETKLTKNVSLKIPLISSAMDTVT------EHLMAVGMARLGGIGIIHKNMDMESQVN 85 (361)
T ss_dssp CCGGGEEECCC-CBCCCGGGCCCCEESSSSCEESSSEEECSSTTTC------SHHHHHHHHHTTCEEEECSSSCHHHHHH
T ss_pred CCcceEEEECC-CCCCCHHHccCceecccccccCCCEEeecCCCCC------cHHHHHHHHHcCCCeEEecCCCHHHHHH
Confidence 46999999998 553 46899999997 68999999999997532 3478886665554 4443 35666667
Q ss_pred HHHHHHHcCCcEEEeccCCccccccHHHHHhhcCCCCcccccccccccccccccccchhhHHHHhhcCCCCCcHHHHHHH
Q 019244 115 LVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWL 194 (344)
Q Consensus 115 ~i~~a~~ag~~~l~~tvd~~~~g~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i 194 (344)
.+++.++.+-..+.+++.... ....+.... .| .+.+. .+ ...+++....+.++++
T Consensus 86 ~I~~vk~~~~~pvga~ig~~~----~e~a~~l~e--aG----------ad~I~---ld------~a~G~~~~~~~~i~~i 140 (361)
T 3khj_A 86 EVLKVKNSGGLRVGAAIGVNE----IERAKLLVE--AG----------VDVIV---LD------SAHGHSLNIIRTLKEI 140 (361)
T ss_dssp HHHHHHHTTCCCCEEEECTTC----HHHHHHHHH--TT----------CSEEE---EC------CSCCSBHHHHHHHHHH
T ss_pred HHHHHHhccCceEEEEeCCCH----HHHHHHHHH--cC----------cCeEE---Ee------CCCCCcHHHHHHHHHH
Confidence 788887655332333332211 111100000 00 00000 00 0112222335679999
Q ss_pred HHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCC------CCCchhhHHHHHHHHHHccC-CCcEEEecCCCCHH
Q 019244 195 QTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ------LDYVPATIMALEEVVKATQG-RIPVFLDGGVRRGT 267 (344)
Q Consensus 195 ~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~------~~~g~~~~~~l~~i~~~~~~-~~~via~GGIr~g~ 267 (344)
++.+++||+++.+.++++++.+.++|+|+|+++.++|.. ..++.|++..+.++++.... ++|||++|||+++.
T Consensus 141 ~~~~~~~Vivg~v~t~e~A~~l~~aGaD~I~VG~~~Gs~~~tr~~~g~g~p~~~~i~~v~~~~~~~~iPVIA~GGI~~~~ 220 (361)
T 3khj_A 141 KSKMNIDVIVGNVVTEEATKELIENGADGIKVGIGPGSICTTRIVAGVGVPQITAIEKCSSVASKFGIPIIADGGIRYSG 220 (361)
T ss_dssp HHHCCCEEEEEEECSHHHHHHHHHTTCSEEEECSSCCTTCCHHHHTCBCCCHHHHHHHHHHHHHHHTCCEEEESCCCSHH
T ss_pred HHhcCCcEEEccCCCHHHHHHHHHcCcCEEEEecCCCcCCCcccccCCCCCcHHHHHHHHHHHhhcCCeEEEECCCCCHH
Confidence 998899999999999999999999999999996555431 23457888888888665422 69999999999999
Q ss_pred HHHHHHHcCCCEEEEchHHH--------------------HHhhhc--------------C-------hH----------
Q 019244 268 DVFKALALGASGIFIGRPVV--------------------YSLAAE--------------G-------EK---------- 296 (344)
Q Consensus 268 dv~kalalGAd~V~ig~~~l--------------------~~~~~~--------------G-------~~---------- 296 (344)
|+.|++++||++|++|+.|+ |++++. + ++
T Consensus 221 di~kala~GAd~V~vGs~~~~t~Esp~~~~~~~g~~~k~y~gm~s~~a~~~~~~~~y~~~~~~~~~~~~eg~~~~v~~~g 300 (361)
T 3khj_A 221 DIGKALAVGASSVMIGSILAGTEESPGEKELIGDTVYKYYRGMGSVGAMKSGSGDRYFQEKRPENKMVPEGIEGRVKYKG 300 (361)
T ss_dssp HHHHHHHHTCSEEEESTTTTTBTTSSCEEEEETTEEEEEC---------------------------------CEEECCB
T ss_pred HHHHHHHcCCCEEEEChhhhcCCcCCcchhhcCCeEEEEeeccchHHHHhccchhhhhcccccccccCCCccEEeCCCCC
Confidence 99999999999999999873 343210 1 11
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHhhhccc
Q 019244 297 GVRRVLEMLREEFELAMALSGCRSLKEITRD 327 (344)
Q Consensus 297 ~v~~~l~~l~~el~~~m~~~G~~~i~~l~~~ 327 (344)
.+.+++.++...|+..|.++|+++|+||+..
T Consensus 301 ~~~~~~~~~~~gl~~~~~~~g~~~~~~~~~~ 331 (361)
T 3khj_A 301 EMEGVVYQLVGGLRSCMGYLGSASIEELWKK 331 (361)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhhhcCCccHHHHHhC
Confidence 2779999999999999999999999999864
|
| >3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.1e-23 Score=203.17 Aligned_cols=279 Identities=18% Similarity=0.212 Sum_probs=175.5
Q ss_pred cccccceeeccc-CCCCCCCcceeec-ccccccceeecccccccccCChhhHHHHHHHHHcCCcc---ccCCHHHHHHHH
Q 019244 42 AFSRILFRPRIL-IDVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM---VYKDRNVVAQLV 116 (344)
Q Consensus 42 ~f~~i~l~pr~l-~~~~~vd~st~l~-g~~l~~Pi~iapm~~~~~~~~~~~~~lA~aA~~~g~~~---~~~d~~~~~~~i 116 (344)
.||++.|+|..- ...++||++|.|- ...+..||+.+||++ ...+ .||.+.+++|... ...+++...+.+
T Consensus 11 t~ddvll~P~~~~~~~~~v~l~t~lt~~l~l~~PIi~a~M~~--Vs~~----~lA~Ava~aGGlGvi~~~~~~e~~~~~i 84 (400)
T 3ffs_A 11 TFEDILLVPNYSEVLPREVSLETKLTKNVSLKIPLISSAMDT--VTEH----LMAVGMARLGGIGIIHKNMDMESQVNEV 84 (400)
T ss_dssp CGGGEEECCCCBCSCGGGCCCCEESSSSCEESSSEEECSCTT--TCSS----HHHHHHHTTTCEEEECSSSCHHHHHHHH
T ss_pred CceeEEEecCCCccCHHHccCccchhcccCCCCCEEeCCCCC--cCcH----HHHHHHHHCCCEEEeCCCCCHHHHHHHH
Confidence 599999999754 2346899999986 478899999999973 3434 5999999998766 245788888888
Q ss_pred HHHHHcCCc----EEE--eccCCcccccc-HHHHHhhcCCCCccccccccccccc-ccccccchhhHHH-------Hh--
Q 019244 117 RRAERAGFK----AIA--LTVDTPRLGRR-EADIKNRFTLPPFLTLKNFQGLDLG-KMDEANDSGLAAY-------VA-- 179 (344)
Q Consensus 117 ~~a~~ag~~----~l~--~tvd~~~~g~r-~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~-------~~-- 179 (344)
+++++..-. .+. +++-.+....+ .+++......|...... .+.+... .+......-+..+ +.
T Consensus 85 ~~vk~~~~g~~~~P~~~~~nL~~~~~~~~~~~~~~~~~~~p~~~~d~-~g~l~v~~~v~~~~~e~~~~lveaGvdvIvld 163 (400)
T 3ffs_A 85 LKVKNWISNLEKNESTPDQNLDKESTDGKDTKSNNNIDAYSNENLDN-KGRLRVGAAIGVNEIERAKLLVEAGVDVIVLD 163 (400)
T ss_dssp HHHHCCC-------------------------------CCTTCCBCT-TSSBCCEEEECCC-CHHHHHHHHHTCSEEEEC
T ss_pred HHHHhhccCcccCCCCccccccCCCCCHHHHHHHHHhhhCcchhhcc-ccceeEEeecCCCHHHHHHHHHHcCCCEEEEe
Confidence 888764321 110 11100000000 01111111122110000 0000000 0000000000111 10
Q ss_pred -hcCCCCCcHHHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCC-----C-CCCchhhHHHHHHHHHHcc
Q 019244 180 -GQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR-----Q-LDYVPATIMALEEVVKATQ 252 (344)
Q Consensus 180 -~~~~~~~~~~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~-----~-~~~g~~~~~~l~~i~~~~~ 252 (344)
..+++...++.|+++++.+++||+++.+.+.++++.+.++|+|+|++++.+|+ . ..++.|++.++.++++.+.
T Consensus 164 ta~G~~~~~~e~I~~ik~~~~i~Vi~g~V~t~e~A~~a~~aGAD~I~vG~g~Gs~~~tr~~~g~g~p~~~al~~v~~~~~ 243 (400)
T 3ffs_A 164 SAHGHSLNIIRTLKEIKSKMNIDVIVGNVVTEEATKELIENGADGIKVGIGPGSICTTRIVAGVGVPQITAIEKCSSVAS 243 (400)
T ss_dssp CSCCSBHHHHHHHHHHHTTCCCEEEEEEECSHHHHHHHHHTTCSEEEECC---------CCSCBCCCHHHHHHHHHHHHT
T ss_pred CCCCCcccHHHHHHHHHhcCCCeEEEeecCCHHHHHHHHHcCCCEEEEeCCCCcCcccccccccchhHHHHHHHHHHHHH
Confidence 11122123567999999889999999999999999999999999999543332 1 1346788999999987754
Q ss_pred C-CCcEEEecCCCCHHHHHHHHHcCCCEEEEchHH--------------------HHHhhhc--------------C---
Q 019244 253 G-RIPVFLDGGVRRGTDVFKALALGASGIFIGRPV--------------------VYSLAAE--------------G--- 294 (344)
Q Consensus 253 ~-~~~via~GGIr~g~dv~kalalGAd~V~ig~~~--------------------l~~~~~~--------------G--- 294 (344)
. ++|||++|||+++.|+.|++++||++|++|+.| +|+|++. +
T Consensus 244 ~~~IPVIA~GGI~~~~di~kalalGAd~V~vGt~f~~t~Es~~~~~~~~g~~~k~y~Gm~s~~am~~~~~~ry~~~~~~~ 323 (400)
T 3ffs_A 244 KFGIPIIADGGIRYSGDIGKALAVGASSVMIGSILAGTEESPGEKELIGDTVYKYYRGMGSVGAMKSGSGDRYFQEKRPE 323 (400)
T ss_dssp TTTCCEEEESCCCSHHHHHHHHTTTCSEEEECGGGTTBTTSSCCEEESSSSEEEC-------------------------
T ss_pred hcCCCEEecCCCCCHHHHHHHHHcCCCEEEEChHHhcCCCCCchhhhcCCeeeeeecCcchHHHHhccccchhhcccccc
Confidence 2 799999999999999999999999999999988 3444310 0
Q ss_pred ----hH----------HHHHHHHHHHHHHHHHHHHhCCCCHhhhccc
Q 019244 295 ----EK----------GVRRVLEMLREEFELAMALSGCRSLKEITRD 327 (344)
Q Consensus 295 ----~~----------~v~~~l~~l~~el~~~m~~~G~~~i~~l~~~ 327 (344)
++ .+.+++.+|...|+..|.++|+++|+||+..
T Consensus 324 ~~~~~eG~~~~v~~~g~~~~~~~~~~~glr~~~~y~G~~~i~el~~~ 370 (400)
T 3ffs_A 324 NKMVPEGIEGRVKYKGEMEGVVYQLVGGLRSCMGYLGSASIEELWKK 370 (400)
T ss_dssp ----------CEECCBCHHHHHHHHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred cccCCCCcEEecCCCCCHHHHHHHHHHHHHHhhhhcCcccHHHHHhC
Confidence 12 2788999999999999999999999999754
|
| >4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.7e-23 Score=202.01 Aligned_cols=256 Identities=19% Similarity=0.246 Sum_probs=176.0
Q ss_pred cccccceeecccC--CCCCCCcceeec-ccccccceeecccccccccCChhhHHHHHHHHHcCCcc-c--cCCHHHHHHH
Q 019244 42 AFSRILFRPRILI--DVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM-V--YKDRNVVAQL 115 (344)
Q Consensus 42 ~f~~i~l~pr~l~--~~~~vd~st~l~-g~~l~~Pi~iapm~~~~~~~~~~~~~lA~aA~~~g~~~-~--~~d~~~~~~~ 115 (344)
.||++.|+|. ++ +.+++|++|.|. ...+..||+.+||++.. +..||.+.++.|... + ..+++...+.
T Consensus 15 ~fddv~lvp~-~~~~~~~~vdl~t~lt~~~~l~~Pii~apM~~vs------~~~lA~avA~aGGlg~i~~~~s~e~~~~~ 87 (366)
T 4fo4_A 15 TFDDVLLVPA-HSTVLPNTADLRTRLTKNIALNIPMVSASMDTVT------EARLAIALAQEGGIGFIHKNMSIEQQAAQ 87 (366)
T ss_dssp CGGGEEECCC-CCCCCGGGCBCCEEEETTEEESSSEEECCCTTTC------SHHHHHHHHHTTCEEEECSSSCHHHHHHH
T ss_pred CcceEEEECC-CCCCChhhcccceecccccccCCCEEeCCCCCCC------hHHHHHHHHHcCCceEeecCCCHHHHHHH
Confidence 6999999997 43 345899999997 58899999999997432 347888877776544 3 3467777777
Q ss_pred HHHHHHcCCcEEEeccCCccccccHHHHHhhcCCCCcccccccccccccccccccchhhHHHHhhcCCCCCcHHHHHHHH
Q 019244 116 VRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQ 195 (344)
Q Consensus 116 i~~a~~ag~~~l~~tvd~~~~g~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~ 195 (344)
++++++.+.-.+.+.+..... . ....+... ....+.+... ...+++....+.|++++
T Consensus 88 i~~vk~~~~l~vga~vg~~~~-~-~~~~~~li------------eaGvd~I~id---------ta~G~~~~~~~~I~~ik 144 (366)
T 4fo4_A 88 VHQVKISGGLRVGAAVGAAPG-N-EERVKALV------------EAGVDVLLID---------SSHGHSEGVLQRIRETR 144 (366)
T ss_dssp HHHHHTTTSCCCEEECCSCTT-C-HHHHHHHH------------HTTCSEEEEE---------CSCTTSHHHHHHHHHHH
T ss_pred HHHHHhcCceeEEEEeccChh-H-HHHHHHHH------------hCCCCEEEEe---------CCCCCCHHHHHHHHHHH
Confidence 888876531111111110000 0 00000000 0000000000 01122222345689999
Q ss_pred Hhc-CCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCC------CCCchhhHHHHHHHHHHcc-CCCcEEEecCCCCHH
Q 019244 196 TIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ------LDYVPATIMALEEVVKATQ-GRIPVFLDGGVRRGT 267 (344)
Q Consensus 196 ~~~-~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~------~~~g~~~~~~l~~i~~~~~-~~~~via~GGIr~g~ 267 (344)
+.+ ++||+++.+.++++++.+.++|+|+|+++..+|.. ..++.+++.++.++++... .++|||++|||+++.
T Consensus 145 ~~~p~v~Vi~G~v~t~e~A~~a~~aGAD~I~vG~gpGs~~~tr~~~g~g~p~~~~l~~v~~~~~~~~iPVIA~GGI~~~~ 224 (366)
T 4fo4_A 145 AAYPHLEIIGGNVATAEGARALIEAGVSAVKVGIGPGSICTTRIVTGVGVPQITAIADAAGVANEYGIPVIADGGIRFSG 224 (366)
T ss_dssp HHCTTCEEEEEEECSHHHHHHHHHHTCSEEEECSSCSTTBCHHHHHCCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHH
T ss_pred HhcCCCceEeeeeCCHHHHHHHHHcCCCEEEEecCCCCCCCcccccCcccchHHHHHHHHHHHhhcCCeEEEeCCCCCHH
Confidence 988 79999999999999999999999999995433421 1356788899998887543 279999999999999
Q ss_pred HHHHHHHcCCCEEEEchHHHH--------------------Hhhh-----c---------C-------hH----------
Q 019244 268 DVFKALALGASGIFIGRPVVY--------------------SLAA-----E---------G-------EK---------- 296 (344)
Q Consensus 268 dv~kalalGAd~V~ig~~~l~--------------------~~~~-----~---------G-------~~---------- 296 (344)
|+.|+|++||++|++|+.|+. ++++ . + ++
T Consensus 225 di~kala~GAd~V~vGs~f~~t~Esp~~~~~~~g~~~k~y~gm~s~~am~~~~~~ry~~~~~~~~~~~~eg~~~~v~~~g 304 (366)
T 4fo4_A 225 DISKAIAAGASCVMVGSMFAGTEEAPGEVILYQGRSYKAYRGMGSLGAMSKGSSDRYFQTDNAADKLVPEGIEGRIAYKG 304 (366)
T ss_dssp HHHHHHHTTCSEEEESTTTTTBTTSSSCCEEETTEEEEEEECTTSHHHHCC---------------CCCSBCEEEEECCB
T ss_pred HHHHHHHcCCCEEEEChHhhcCCCCCchhhhhCCceeEEeeccccHHHHhcccccchhccccccccccCCCcEEecCCCC
Confidence 999999999999999998842 2221 0 0 01
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHhhhccc
Q 019244 297 GVRRVLEMLREEFELAMALSGCRSLKEITRD 327 (344)
Q Consensus 297 ~v~~~l~~l~~el~~~m~~~G~~~i~~l~~~ 327 (344)
.+.+++.+|...|+..|.++|+++|+||++.
T Consensus 305 ~~~~~~~~~~~glr~~~~y~g~~~~~~~~~~ 335 (366)
T 4fo4_A 305 HLKEIIHQQMGGLRSCMGLTGSATVEDLRTK 335 (366)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCSBHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhhccCcccHHHHHhC
Confidence 2789999999999999999999999999864
|
| >4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.3e-21 Score=193.83 Aligned_cols=141 Identities=22% Similarity=0.351 Sum_probs=119.0
Q ss_pred cHHHHHHHHHhc-CCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCC------CCCchhhHHHHHHHHHHccC-CCcEE
Q 019244 187 SWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ------LDYVPATIMALEEVVKATQG-RIPVF 258 (344)
Q Consensus 187 ~~~~i~~i~~~~-~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~------~~~g~~~~~~l~~i~~~~~~-~~~vi 258 (344)
.++.+++|++.+ ++||++..+.|.+.++.++++|||+|.|.-.+|.- ...|.|++.++.+++++.+. .+|||
T Consensus 309 v~~~i~~ik~~~p~~~viaGNVaT~e~a~~Li~aGAD~vkVGiGpGSiCtTr~v~GvG~PQ~tAi~~~a~~a~~~~vpvI 388 (556)
T 4af0_A 309 QIEFIKWIKQTYPKIDVIAGNVVTREQAAQLIAAGADGLRIGMGSGSICITQEVMAVGRPQGTAVYAVAEFASRFGIPCI 388 (556)
T ss_dssp HHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHHTCSEEEECSSCSTTBCCTTTCCSCCCHHHHHHHHHHHHGGGTCCEE
T ss_pred HHHHHHHHHhhCCcceEEeccccCHHHHHHHHHcCCCEEeecCCCCcccccccccCCCCcHHHHHHHHHHHHHHcCCCEE
Confidence 467899999998 69999999999999999999999999998766641 23478999999999887643 69999
Q ss_pred EecCCCCHHHHHHHHHcCCCEEEEchHH--------------------HHHhhh--------------------------
Q 019244 259 LDGGVRRGTDVFKALALGASGIFIGRPV--------------------VYSLAA-------------------------- 292 (344)
Q Consensus 259 a~GGIr~g~dv~kalalGAd~V~ig~~~--------------------l~~~~~-------------------------- 292 (344)
+||||++..|++|||++|||+||+|+.| +|++++
T Consensus 389 ADGGI~~sGDi~KAlaaGAd~VMlGsllAGt~EsPGe~~~~~G~~~K~YrGMgS~~Am~~~~~~~~~~~~~~~~~~~~s~ 468 (556)
T 4af0_A 389 ADGGIGNIGHIAKALALGASAVMMGGLLAGTTESPGEYFYHEGKRVKVYRGMGSIEAMEHTQRGSASGKRSILGLDNAAT 468 (556)
T ss_dssp EESCCCSHHHHHHHHHTTCSEEEESTTTTTBTTSSSCCEEETTEEEEEEECTTSHHHHTTC------------CCSCSSE
T ss_pred ecCCcCcchHHHHHhhcCCCEEEEchhhccccCCCCcEEEECCEEEEeecccccHHHHHhcccCCcccccccccccccch
Confidence 9999999999999999999999999987 122221
Q ss_pred -------------cChH-------HHHHHHHHHHHHHHHHHHHhCCCCHhhhccc
Q 019244 293 -------------EGEK-------GVRRVLEMLREEFELAMALSGCRSLKEITRD 327 (344)
Q Consensus 293 -------------~G~~-------~v~~~l~~l~~el~~~m~~~G~~~i~~l~~~ 327 (344)
+|.+ .+.+++.+|...|+..|.++|+++|.||+..
T Consensus 469 dRyfq~~~~~~v~EGveg~VpykG~v~~~i~~l~gGlrs~m~y~Ga~~i~el~~~ 523 (556)
T 4af0_A 469 ARYFSEADAVKVAQGVSGDVADKGSINKFVPYLFTGLQHSLQDAAIKSVSELHSC 523 (556)
T ss_dssp EECCCBSSSSCBCCBCEEEEECCBCHHHHHHHHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred hhhcccccccccCCccEEeccCCCcHHHHHHHHHHHHHHhhhccCCCcHHHHHHh
Confidence 0100 2789999999999999999999999999864
|
| >3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=3.9e-20 Score=186.32 Aligned_cols=141 Identities=24% Similarity=0.339 Sum_probs=115.0
Q ss_pred cHHHHHHHHHhcC-CcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCC------CCCchhhHHHHHHHHHHccC-CCcEE
Q 019244 187 SWKDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ------LDYVPATIMALEEVVKATQG-RIPVF 258 (344)
Q Consensus 187 ~~~~i~~i~~~~~-~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~------~~~g~~~~~~l~~i~~~~~~-~~~vi 258 (344)
.++.++++++.++ +|+++|.+.+.++++.+.++|+|+|+++.++|+. ..++.|++.++.++++.++. ++|||
T Consensus 284 v~~~i~~i~~~~~~~~vi~g~v~t~e~a~~~~~aGad~i~vg~g~gsi~~~~~~~g~g~p~~~~l~~v~~~~~~~~iPVI 363 (511)
T 3usb_A 284 VIDKVKEVRAKYPSLNIIAGNVATAEATKALIEAGANVVKVGIGPGSICTTRVVAGVGVPQLTAVYDCATEARKHGIPVI 363 (511)
T ss_dssp HHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHHTCSEEEECSSCSTTCCHHHHHCCCCCHHHHHHHHHHHHHTTTCCEE
T ss_pred hhhHHHHHHHhCCCceEEeeeeccHHHHHHHHHhCCCEEEECCCCccccccccccCCCCCcHHHHHHHHHHHHhCCCcEE
Confidence 3468999999984 8999999999999999999999999996655542 23567889999888776643 69999
Q ss_pred EecCCCCHHHHHHHHHcCCCEEEEchHH--------------------HHHhhh----------------------cChH
Q 019244 259 LDGGVRRGTDVFKALALGASGIFIGRPV--------------------VYSLAA----------------------EGEK 296 (344)
Q Consensus 259 a~GGIr~g~dv~kalalGAd~V~ig~~~--------------------l~~~~~----------------------~G~~ 296 (344)
++|||+++.|++|++++||++|++|++| +|++++ +|.+
T Consensus 364 a~GGI~~~~di~kala~GA~~V~vGs~~~~~~es~g~~~~~~g~~~k~~~gm~s~~a~~~~~~~r~~~~~~~~~~~eG~~ 443 (511)
T 3usb_A 364 ADGGIKYSGDMVKALAAGAHVVMLGSMFAGVAESPGETEIYQGRQFKVYRGMGSVGAMEKGSKDRYFQEGNKKLVPEGIE 443 (511)
T ss_dssp EESCCCSHHHHHHHHHTTCSEEEESTTTTTBTTSSSCEEECSSSEEEC--------------------------------
T ss_pred EeCCCCCHHHHHHHHHhCchhheecHHHhcCccCchhhhhccCeeeeeeeccccHHHHhcccccchhccccccccCCCcE
Confidence 9999999999999999999999999997 344433 1222
Q ss_pred H-------HHHHHHHHHHHHHHHHHHhCCCCHhhhccc
Q 019244 297 G-------VRRVLEMLREEFELAMALSGCRSLKEITRD 327 (344)
Q Consensus 297 ~-------v~~~l~~l~~el~~~m~~~G~~~i~~l~~~ 327 (344)
+ +.++++.|..+|+..|.++|++++.+|+..
T Consensus 444 ~~~~~~~~~~~~~~~~~~~lr~~m~~~G~~~i~~l~~~ 481 (511)
T 3usb_A 444 GRVPYKGPLADTVHQLVGGLRAGMGYCGAQDLEFLREN 481 (511)
T ss_dssp --CBCCBCHHHHHHHHHHHHHHHHHHTTCSBHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHHHHHHHhcCcccHHHHHhC
Confidence 2 778999999999999999999999999864
|
| >2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=3.5e-20 Score=175.68 Aligned_cols=133 Identities=23% Similarity=0.242 Sum_probs=109.3
Q ss_pred cHHHHHHHHHhcCCcEEEEee--cCHHH----HHHHHHcC-CcEEEEccCCCC--CCC-----------------Cc---
Q 019244 187 SWKDVKWLQTITKLPILVKGV--LTAED----ARIAVQAG-AAGIIVSNHGAR--QLD-----------------YV--- 237 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v--~~~~~----a~~~~~~G-~d~I~v~~~gG~--~~~-----------------~g--- 237 (344)
.++.++++++.+++||++|.. .+.++ ++.+.++| +|+|+++|+.++ ..+ .|
T Consensus 148 ~~~ii~~vr~~~~~Pv~vK~~~~~~~~~~~~~a~~~~~aG~~d~i~v~~~~~~~~~i~~~~~~~~~~~~~~~gG~sg~~~ 227 (314)
T 2e6f_A 148 MRTYLQQVSLAYGLPFGVKMPPYFDIAHFDTAAAVLNEFPLVKFVTCVNSVGNGLVIDAESESVVIKPKQGFGGLGGKYI 227 (314)
T ss_dssp HHHHHHHHHHHHCSCEEEEECCCCCHHHHHHHHHHHHTCTTEEEEEECCCEEEEECEETTTTEESCCGGGGEEEEESGGG
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHHHHHhcCCceEEEEeCCCCccccccCCCCCcccccCcCCCccCcccc
Confidence 456899999988999999987 35555 78889999 999999986531 000 11
Q ss_pred -hhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHh
Q 019244 238 -PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALS 316 (344)
Q Consensus 238 -~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~ 316 (344)
+.+++.+.++++.+ +++|||++|||+|+.|+.+++++|||+|++||++++ +|+ .+++.+.++++.+|...
T Consensus 228 ~p~~~~~i~~v~~~~-~~ipvi~~GGI~~~~da~~~l~~GAd~V~ig~~~l~----~~p----~~~~~i~~~l~~~~~~~ 298 (314)
T 2e6f_A 228 LPTALANVNAFYRRC-PDKLVFGCGGVYSGEDAFLHILAGASMVQVGTALQE----EGP----GIFTRLEDELLEIMARK 298 (314)
T ss_dssp HHHHHHHHHHHHHHC-TTSEEEEESSCCSHHHHHHHHHHTCSSEEECHHHHH----HCT----THHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhc-CCCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhHh----cCc----HHHHHHHHHHHHHHHHc
Confidence 22467788888877 589999999999999999999999999999999996 244 37889999999999999
Q ss_pred CCCCHhhhcccc
Q 019244 317 GCRSLKEITRDH 328 (344)
Q Consensus 317 G~~~i~~l~~~~ 328 (344)
|++|++|+++..
T Consensus 299 g~~~i~~~~g~~ 310 (314)
T 2e6f_A 299 GYRTLEEFRGRV 310 (314)
T ss_dssp TCCSSTTTTTCC
T ss_pred CCCCHHHHhchH
Confidence 999999998653
|
| >4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.5e-19 Score=179.66 Aligned_cols=141 Identities=23% Similarity=0.393 Sum_probs=116.6
Q ss_pred cHHHHHHHHHhc-CCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCC------CCCchhhHHHHHHHHHHccC-CCcEE
Q 019244 187 SWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ------LDYVPATIMALEEVVKATQG-RIPVF 258 (344)
Q Consensus 187 ~~~~i~~i~~~~-~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~------~~~g~~~~~~l~~i~~~~~~-~~~vi 258 (344)
.++.++++++.+ ++||+++.+.+.++++.+.++|+|+|+|++.+|.. ..+|.|+++++.++++.++. ++|||
T Consensus 257 ~~~~v~~i~~~~p~~~Vi~g~v~t~e~a~~l~~aGaD~I~vg~g~Gs~~~t~~~~g~g~p~~~~l~~v~~~~~~~~iPVI 336 (490)
T 4avf_A 257 VIERVRWVKQTFPDVQVIGGNIATAEAAKALAEAGADAVKVGIGPGSICTTRIVAGVGVPQISAIANVAAALEGTGVPLI 336 (490)
T ss_dssp HHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHTTCSEEEECSSCSTTCHHHHHTCBCCCHHHHHHHHHHHHTTTTCCEE
T ss_pred HHHHHHHHHHHCCCceEEEeeeCcHHHHHHHHHcCCCEEEECCCCCcCCCccccCCCCccHHHHHHHHHHHhccCCCcEE
Confidence 357899999998 78999999999999999999999999997554432 34567899999999887643 79999
Q ss_pred EecCCCCHHHHHHHHHcCCCEEEEchHHH--------------------HHhhh--------------------------
Q 019244 259 LDGGVRRGTDVFKALALGASGIFIGRPVV--------------------YSLAA-------------------------- 292 (344)
Q Consensus 259 a~GGIr~g~dv~kalalGAd~V~ig~~~l--------------------~~~~~-------------------------- 292 (344)
++|||+++.|+.|++++||++|++|+.|+ |++++
T Consensus 337 a~GGI~~~~di~kal~~GAd~V~vGs~~~~~~Esp~~~~~~~g~~~k~~~gm~s~~a~~~~~~~~~r~~~~~~~~~~~~~ 416 (490)
T 4avf_A 337 ADGGIRFSGDLAKAMVAGAYCVMMGSMFAGTEEAPGEIELFQGRSYKSYRGMGSLGAMSGSQGSSDRYFQDASAGAEKLV 416 (490)
T ss_dssp EESCCCSHHHHHHHHHHTCSEEEECTTTTTBTTSSSCEEEETTEEEEC--------------------------------
T ss_pred EeCCCCCHHHHHHHHHcCCCeeeecHHHhcCCCCCCceEeECCeEeeeecCcccHHHHhhcccccchhhccccccccccc
Confidence 99999999999999999999999999873 34332
Q ss_pred -cChH-------HHHHHHHHHHHHHHHHHHHhCCCCHhhhccc
Q 019244 293 -EGEK-------GVRRVLEMLREEFELAMALSGCRSLKEITRD 327 (344)
Q Consensus 293 -~G~~-------~v~~~l~~l~~el~~~m~~~G~~~i~~l~~~ 327 (344)
+|.+ .+.+++.+|..+|+..|.++|+++|+||++.
T Consensus 417 ~eg~~~~v~~~g~~~~~~~~~~~~lr~~~~~~g~~~i~~l~~~ 459 (490)
T 4avf_A 417 PEGIEGRVPYKGALSAIVHQLMGGLRAAMGYTGSADIQQMRTQ 459 (490)
T ss_dssp -------CBCCBCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHS
T ss_pred CCCcEEcCCcCCCHHHHHHHHHHHHHHHHHhcCcCcHHHHHhC
Confidence 1111 3668999999999999999999999999875
|
| >1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.1e-20 Score=188.14 Aligned_cols=144 Identities=20% Similarity=0.277 Sum_probs=121.3
Q ss_pred cHHHHHHHHHhc-C-CcEEEEeecCHHHHHHHHHcCCcEEEEccCCCC-----C-CCCchhhHHHHHHHHHHccC-----
Q 019244 187 SWKDVKWLQTIT-K-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR-----Q-LDYVPATIMALEEVVKATQG----- 253 (344)
Q Consensus 187 ~~~~i~~i~~~~-~-~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~-----~-~~~g~~~~~~l~~i~~~~~~----- 253 (344)
.++.++++++.+ + +|++++.+.+.++++.+.++|+|+|+|+.+||. . .++|.|++.++.++.+.+..
T Consensus 270 ~~~~i~~lk~~~~~~~~Vi~G~V~t~~~a~~l~~aGad~I~Vg~~~g~~~~~r~~~~~g~p~~~~l~~v~~~~~~~~~~~ 349 (503)
T 1me8_A 270 QKITIGWIREKYGDKVKVGAGNIVDGEGFRYLADAGADFIKIGIGGGSICITREQKGIGRGQATAVIDVVAERNKYFEET 349 (503)
T ss_dssp HHHHHHHHHHHHGGGSCEEEEEECSHHHHHHHHHHTCSEEEECSSCSTTCCSTTTTCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhCCCCceEeeccccCHHHHHHHHHhCCCeEEecccCCcCcccccccCCCCchHHHHHHHHHHHHHHhhhc
Confidence 467899999988 5 899999999999999999999999999655542 2 34688999999999876532
Q ss_pred --CCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHH--------------------HHhhhcCh----------------
Q 019244 254 --RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV--------------------YSLAAEGE---------------- 295 (344)
Q Consensus 254 --~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l--------------------~~~~~~G~---------------- 295 (344)
++|||++|||+++.|++|||++||++|++|++|+ |++++.|+
T Consensus 350 ~~~ipvia~GGi~~~~di~kAlalGA~~V~iG~~~~~~~E~~~~~~~~~g~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~ 429 (503)
T 1me8_A 350 GIYIPVCSDGGIVYDYHMTLALAMGADFIMLGRYFARFEESPTRKVTINGSVMKEYWGEGSSRARNWQRYDLGGKQKLSF 429 (503)
T ss_dssp SEECCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTBTTSSSCEEEETTEEEEEEECTTSHHHHCC-------------
T ss_pred CCCceEEEeCCCCCHHHHHHHHHcCCCEEEECchhhccccCCCceEEECCeEEEeecCccchhHhhccccccccccceec
Confidence 5999999999999999999999999999999995 44433221
Q ss_pred -----------HHHHHHHHHHHHHHHHHHHHhCCCCHhhhcc-ccee
Q 019244 296 -----------KGVRRVLEMLREEFELAMALSGCRSLKEITR-DHIV 330 (344)
Q Consensus 296 -----------~~v~~~l~~l~~el~~~m~~~G~~~i~~l~~-~~l~ 330 (344)
.++.++++.|..||+..|.++|++++++|++ ..++
T Consensus 430 ~eg~~~~~~~~~~v~~~~~~~~~~l~~~m~~~G~~~i~~l~~~~~~~ 476 (503)
T 1me8_A 430 EEGVDSYVPYAGKLKDNVEASLNKVKSTMCNCGALTIPQLQSKAKIT 476 (503)
T ss_dssp -CCCEEEEECCBCHHHHHHHHHHHHHHHHHHTTCSBHHHHHHHCCEE
T ss_pred ccceeEecCCCCcHHHHHHHHHHHHHHHHHhcCcchHHHHHhCCCEE
Confidence 2578999999999999999999999999987 4444
|
| >4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=99.82 E-value=8.3e-19 Score=176.01 Aligned_cols=141 Identities=23% Similarity=0.352 Sum_probs=117.4
Q ss_pred cHHHHHHHHHhc-CCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCC------CCCchhhHHHHHHHHHHccC-CCcEE
Q 019244 187 SWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ------LDYVPATIMALEEVVKATQG-RIPVF 258 (344)
Q Consensus 187 ~~~~i~~i~~~~-~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~------~~~g~~~~~~l~~i~~~~~~-~~~vi 258 (344)
.++.++++++.+ ++||+++.+.+.+.++.+.++|+|+|+|++.+|.. ..+|.|++.++.++.+.++. ++|||
T Consensus 259 ~~~~i~~ir~~~p~~~Vi~g~v~t~e~a~~l~~aGaD~I~Vg~g~Gs~~~tr~~~g~g~p~~~~i~~v~~~~~~~~iPVI 338 (496)
T 4fxs_A 259 VLQRIRETRAAYPHLEIIGGNVATAEGARALIEAGVSAVKVGIGPGSICTTRIVTGVGVPQITAIADAAGVANEYGIPVI 338 (496)
T ss_dssp HHHHHHHHHHHCTTCCEEEEEECSHHHHHHHHHHTCSEEEECSSCCTTBCHHHHHCCCCCHHHHHHHHHHHHGGGTCCEE
T ss_pred HHHHHHHHHHHCCCceEEEcccCcHHHHHHHHHhCCCEEEECCCCCcCcccccccCCCccHHHHHHHHHHHhccCCCeEE
Confidence 346799999998 79999999999999999999999999998654432 13467889999999886632 69999
Q ss_pred EecCCCCHHHHHHHHHcCCCEEEEchHHHH--------------------Hhhh------------------------cC
Q 019244 259 LDGGVRRGTDVFKALALGASGIFIGRPVVY--------------------SLAA------------------------EG 294 (344)
Q Consensus 259 a~GGIr~g~dv~kalalGAd~V~ig~~~l~--------------------~~~~------------------------~G 294 (344)
++|||+++.|+.|++++||++|++|+.|+. ++++ +|
T Consensus 339 a~GGI~~~~di~kala~GAd~V~iGs~f~~t~Espg~~~~~~g~~~k~~~gm~s~~a~~~~~~~r~~~~~~~~~~~~~eg 418 (496)
T 4fxs_A 339 ADGGIRFSGDISKAIAAGASCVMVGSMFAGTEEAPGEVILYQGRSYKAYRGMGSLGAMSKGSSDRYFQTDNAADKLVPEG 418 (496)
T ss_dssp EESCCCSHHHHHHHHHTTCSEEEESTTTTTBTTSSSCCEESSSCEEEEEECTTSHHHHHSSSCCSTTTC---CCCCCCSB
T ss_pred EeCCCCCHHHHHHHHHcCCCeEEecHHHhcCCCCCcceeeeCCeEeeeecccchHHHHhccccccccccccccccccCCc
Confidence 999999999999999999999999998842 2221 01
Q ss_pred h-------HHHHHHHHHHHHHHHHHHHHhCCCCHhhhccc
Q 019244 295 E-------KGVRRVLEMLREEFELAMALSGCRSLKEITRD 327 (344)
Q Consensus 295 ~-------~~v~~~l~~l~~el~~~m~~~G~~~i~~l~~~ 327 (344)
. ..+.+++.+|..+|+..|.++|+++|+||++.
T Consensus 419 ~~~~v~~~g~~~~~~~~~~~~l~~~~~~~g~~~i~~l~~~ 458 (496)
T 4fxs_A 419 IEGRIAYKGHLKEIIHQQMGGLRSCMGLTGSATVEDLRTK 458 (496)
T ss_dssp CEEEEECCBCHHHHHHHHHHHHHHHHHHHTCSBHHHHHHH
T ss_pred cEEeCCCCCCHHHHHHHHHHHHHHHHHhcCcCcHHHHHhC
Confidence 0 13779999999999999999999999999854
|
| >2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=99.81 E-value=2.9e-19 Score=179.17 Aligned_cols=139 Identities=23% Similarity=0.320 Sum_probs=113.2
Q ss_pred HHHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCC-------CCCchhhHHHHHHHHHHccC-CCcEEE
Q 019244 188 WKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ-------LDYVPATIMALEEVVKATQG-RIPVFL 259 (344)
Q Consensus 188 ~~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~-------~~~g~~~~~~l~~i~~~~~~-~~~via 259 (344)
++.++++++.+++|+++|++.++++++.+. |+|+|.+ +.|+.. ..+|.+++.++.++.+.... ++|||+
T Consensus 257 L~~I~~l~~~~~vpvi~k~v~~~~~a~~l~--G~d~v~v-g~g~g~~~~~r~~~~~g~~~~~~l~~~~~~~~~~~vpVia 333 (486)
T 2cu0_A 257 IKSMKEMRQKVDADFIVGNIANPKAVDDLT--FADAVKV-GIGPGSICTTRIVAGVGVPQITAVAMVADRAQEYGLYVIA 333 (486)
T ss_dssp HHHHHHHHHTCCSEEEEEEECCHHHHTTCT--TSSEEEE-CSSCSTTBCHHHHTCCCCCHHHHHHHHHHHHHHHTCEEEE
T ss_pred hhHHHHHHHHhCCccccCCcCCHHHHHHhh--CCCeEEE-eeeeccceeeeEEeecCcchHHHHHHHHHHHHHcCCcEEe
Confidence 467899999999999999999999998888 9999999 444432 34567777777666554321 699999
Q ss_pred ecCCCCHHHHHHHHHcCCCEEEEchHHHH--------------------HhhhcC----------------------hHH
Q 019244 260 DGGVRRGTDVFKALALGASGIFIGRPVVY--------------------SLAAEG----------------------EKG 297 (344)
Q Consensus 260 ~GGIr~g~dv~kalalGAd~V~ig~~~l~--------------------~~~~~G----------------------~~~ 297 (344)
+|||+++.|++|||++|||+|++|++|+. ++++.| ++|
T Consensus 334 ~GGi~~~~di~kalalGA~~v~~g~~~~~~~e~~~~~~~~~g~~~k~~~g~~~~~a~~~~~~~r~~~g~~~~~~~~~~~g 413 (486)
T 2cu0_A 334 DGGIRYSGDIVKAIAAGADAVMLGNLLAGTKEAPGKEVIINGRKYKQYRGMGSLGAMMKGGAERYYQGGYMKTRKFVPEG 413 (486)
T ss_dssp ESCCCSHHHHHHHHHTTCSEEEESTTTTTBTTCCSCEEEETTEEEEEEECTTSHHHHTC----------CCCCSCSSCCB
T ss_pred cCCCCCHHHHHHHHHcCCCceeeChhhhcCccCchhheeeCCcEEEEeecCCCHHHHhcccccccccccccccccccccc
Confidence 99999999999999999999999999983 221111 133
Q ss_pred ----------HHHHHHHHHHHHHHHHHHhCCCCHhhhcccce
Q 019244 298 ----------VRRVLEMLREEFELAMALSGCRSLKEITRDHI 329 (344)
Q Consensus 298 ----------v~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l 329 (344)
+..+++.|..+|+..|.++|++++.+|+....
T Consensus 414 ~~~~~~~~~~~~~~~~~l~~~lr~~m~~~G~~~~~~l~~~~~ 455 (486)
T 2cu0_A 414 VEGVVPYRGTVSEVLYQLVGGLKAGMGYVGARNIRELKEKGE 455 (486)
T ss_dssp CEEEEECCBCHHHHHHHHHHHHHHHHHHTTCSBHHHHHHHCC
T ss_pred eEEeecccCCHHHHHHHHHHHHHHhcccCCcCCHHHHHhhCC
Confidence 88999999999999999999999999986543
|
| >1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1e-18 Score=165.34 Aligned_cols=133 Identities=22% Similarity=0.219 Sum_probs=108.2
Q ss_pred cHHHHHHHHHhcCCcEEEEeec--CHHH----HHHHHHcCCcEEEEccCCC--CCCC--------------C---ch---
Q 019244 187 SWKDVKWLQTITKLPILVKGVL--TAED----ARIAVQAGAAGIIVSNHGA--RQLD--------------Y---VP--- 238 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v~--~~~~----a~~~~~~G~d~I~v~~~gG--~~~~--------------~---g~--- 238 (344)
.++.++++++.+++||++|... +.++ ++.+.++|+|+|+++|+.+ ...+ + |+
T Consensus 146 ~~~iv~~vr~~~~~Pv~vKi~~~~~~~~~~~~a~~~~~~G~d~i~v~~~~~~g~~i~~~~~~~~~~~~~~~gG~sg~~~~ 225 (311)
T 1jub_A 146 TEKLLKEVFTFFTKPLGVKLPPYFDLVHFDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAYIK 225 (311)
T ss_dssp HHHHHHHHTTTCCSCEEEEECCCCSHHHHHHHHHHHTTSCCCEEEECCCEEEEECEETTTTEESCSGGGGEEEEESGGGH
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHHHHHHcCCcEEEecCCCCcCceeccCCCCcccccCCCCCcccccccc
Confidence 4677999999889999999874 4333 7888899999999998642 1111 0 22
Q ss_pred -hhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhC
Q 019244 239 -ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSG 317 (344)
Q Consensus 239 -~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G 317 (344)
.+++.+.++++.+++++|||++|||+|++|+.+++++|||+|++||++++ +|+ .+++.+.++++.+|...|
T Consensus 226 ~~~~~~i~~v~~~~~~~ipvi~~GGI~~~~da~~~l~~GAd~V~vg~~~l~----~~p----~~~~~i~~~l~~~l~~~g 297 (311)
T 1jub_A 226 PTALANVRAFYTRLKPEIQIIGTGGIETGQDAFEHLLCGATMLQIGTALHK----EGP----AIFDRIIKELEEIMNQKG 297 (311)
T ss_dssp HHHHHHHHHHHTTSCTTSEEEEESSCCSHHHHHHHHHHTCSEEEECHHHHH----HCT----HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCCCEEEEchHHHh----cCc----HHHHHHHHHHHHHHHHcC
Confidence 23567788877765589999999999999999999999999999999997 244 378899999999999999
Q ss_pred CCCHhhhccc
Q 019244 318 CRSLKEITRD 327 (344)
Q Consensus 318 ~~~i~~l~~~ 327 (344)
++|++|+++.
T Consensus 298 ~~si~e~~g~ 307 (311)
T 1jub_A 298 YQSIADFHGK 307 (311)
T ss_dssp CCSGGGTTTC
T ss_pred CCCHHHHhCh
Confidence 9999999865
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.1e-18 Score=189.00 Aligned_cols=133 Identities=19% Similarity=0.272 Sum_probs=108.4
Q ss_pred CCcHHHHHHHHHhcCCcEEEEeecC----HHHHHHHHHcCCcEEEEccC--------------------CCCCCC--Cch
Q 019244 185 SLSWKDVKWLQTITKLPILVKGVLT----AEDARIAVQAGAAGIIVSNH--------------------GARQLD--YVP 238 (344)
Q Consensus 185 ~~~~~~i~~i~~~~~~PvivK~v~~----~~~a~~~~~~G~d~I~v~~~--------------------gG~~~~--~g~ 238 (344)
.+.++.++++++.+++||++|+..+ .+.++.+.++|+|+|+++|+ |.+... .|+
T Consensus 689 ~~~~~iv~~v~~~~~~Pv~vK~~~~~~~~~~~a~~~~~~G~d~i~v~Nt~~~~~~~~~~~~~~~~~~~~gr~~~gg~sg~ 768 (1025)
T 1gte_A 689 ELVRNICRWVRQAVQIPFFAKLTPNVTDIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGT 768 (1025)
T ss_dssp HHHHHHHHHHHHHCSSCEEEEECSCSSCHHHHHHHHHHHTCSEEEECCCEEECCCBCTTSCBSSCBTTTTBBCCEEEESG
T ss_pred HHHHHHHHHHHHhhCCceEEEeCCChHHHHHHHHHHHHcCCCEEEEeccccccccccccccccccccccccccCCCCCcc
Confidence 4457789999999999999999753 35589999999999999863 221111 122
Q ss_pred hh----HHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcChHHHHHHHHHHHHHHHHHHH
Q 019244 239 AT----IMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMA 314 (344)
Q Consensus 239 ~~----~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~el~~~m~ 314 (344)
+. +..+.++++.+ +++|||++|||+|+.|+.++|++||++|++||++++ .+. .+++.+.+||+.+|.
T Consensus 769 ~~~~~~~~~v~~v~~~~-~~ipvi~~GGI~s~~da~~~l~~Ga~~v~vg~~~l~----~~~----~~~~~~~~~l~~~l~ 839 (1025)
T 1gte_A 769 AIRPIALRAVTTIARAL-PGFPILATGGIDSAESGLQFLHSGASVLQVCSAVQN----QDF----TVIQDYCTGLKALLY 839 (1025)
T ss_dssp GGHHHHHHHHHHHHHHS-TTCCEEEESSCCSHHHHHHHHHTTCSEEEESHHHHT----SCT----THHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHc-CCCCEEEecCcCCHHHHHHHHHcCCCEEEEeecccc----CCc----cHHHHHHHHHHHHHH
Confidence 22 46788888777 469999999999999999999999999999999986 133 467889999999999
Q ss_pred HhCCCCHhhhcc
Q 019244 315 LSGCRSLKEITR 326 (344)
Q Consensus 315 ~~G~~~i~~l~~ 326 (344)
..|+++++++..
T Consensus 840 ~~G~~~i~~l~g 851 (1025)
T 1gte_A 840 LKSIEELQGWDG 851 (1025)
T ss_dssp HTTCGGGTTSBT
T ss_pred HcCCCCHHHHhC
Confidence 999999999986
|
| >4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=4e-18 Score=163.78 Aligned_cols=132 Identities=20% Similarity=0.143 Sum_probs=104.9
Q ss_pred cHHHHHHHHHhcCCcEEEEeec--CHHH----HHHHHHcC-CcEEEEccCCC---------CC-------CCC---c---
Q 019244 187 SWKDVKWLQTITKLPILVKGVL--TAED----ARIAVQAG-AAGIIVSNHGA---------RQ-------LDY---V--- 237 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v~--~~~~----a~~~~~~G-~d~I~v~~~gG---------~~-------~~~---g--- 237 (344)
..+.++++++.+++||+||+.. +.++ ++.+.++| +|+|+++|+-| +. ..+ |
T Consensus 181 ~~~il~av~~~~~~PV~vKi~p~~d~~~~~~~a~~~~~~Gg~d~I~~~NT~~~g~~idi~~~~~~~~~~~~~gGlSG~~i 260 (354)
T 4ef8_A 181 MRQCLTAVSEVYPHSFGVKMPPYFDFAHFDAAAEILNEFPKVQFITCINSIGNGLVIDAETESVVIKPKQGFGGLGGRYV 260 (354)
T ss_dssp HHHHHHHHHHHCCSCEEEEECCCCSHHHHHHHHHHHHTCTTEEEEEECCCEEEEECEETTTTEESCSGGGGEEEEEGGGG
T ss_pred HHHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHHhCCCccEEEEecccCcceeeeccCCccccccccccCCCCCCCC
Confidence 4567999999999999999974 3332 34455887 99999877531 10 011 2
Q ss_pred -hhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHh
Q 019244 238 -PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALS 316 (344)
Q Consensus 238 -~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~ 316 (344)
+..++.+.++++.. .++|||++|||+|++|+.+++.+|||+|++||++++. |+. +++.+.++|+.+|...
T Consensus 261 ~p~a~~~i~~v~~~~-~~ipII~~GGI~s~~da~~~l~aGAd~V~vgra~l~~----GP~----~~~~i~~~l~~~m~~~ 331 (354)
T 4ef8_A 261 LPTALANINAFYRRC-PGKLIFGCGGVYTGEDAFLHVLAGASMVQVGTALQEE----GPS----IFERLTSELLGVMAKK 331 (354)
T ss_dssp HHHHHHHHHHHHHHC-TTSEEEEESCCCSHHHHHHHHHHTEEEEEECHHHHHH----CTT----HHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhC-CCCCEEEECCcCCHHHHHHHHHcCCCEEEEhHHHHHh----CHH----HHHHHHHHHHHHHHHc
Confidence 23567788888773 4799999999999999999999999999999999873 553 7788999999999999
Q ss_pred CCCCHhhhccc
Q 019244 317 GCRSLKEITRD 327 (344)
Q Consensus 317 G~~~i~~l~~~ 327 (344)
|+++++|+++.
T Consensus 332 G~~si~el~G~ 342 (354)
T 4ef8_A 332 RYQTLDEFRGK 342 (354)
T ss_dssp TCCSGGGTTTC
T ss_pred CCCCHHHHHHH
Confidence 99999999876
|
| >1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.7e-17 Score=156.46 Aligned_cols=131 Identities=23% Similarity=0.285 Sum_probs=104.7
Q ss_pred CcHHHHHHHHHhcCCcEEEEeec---C-HHHHHHHHHcCCcEEEEccC-------CCCCC------C---Cchh----hH
Q 019244 186 LSWKDVKWLQTITKLPILVKGVL---T-AEDARIAVQAGAAGIIVSNH-------GARQL------D---YVPA----TI 241 (344)
Q Consensus 186 ~~~~~i~~i~~~~~~PvivK~v~---~-~~~a~~~~~~G~d~I~v~~~-------gG~~~------~---~g~~----~~ 241 (344)
+.++.++++++.+++||++|... + .+.++.+.++|+|+|+++|. +.+.. . .+++ .+
T Consensus 151 ~~~eii~~v~~~~~~pv~vk~~~~~~~~~~~a~~l~~~G~d~i~v~~~~~g~~i~~~~~~~~~~~~~~g~~g~~~~~~~~ 230 (311)
T 1ep3_A 151 VAAALVKACKAVSKVPLYVKLSPNVTDIVPIAKAVEAAGADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVAL 230 (311)
T ss_dssp HHHHHHHHHHHHCSSCEEEEECSCSSCSHHHHHHHHHTTCSEEEECCCEEECCBCTTTCSBSSTTSCEEEESGGGHHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEECCChHHHHHHHHHHHHcCCCEEEEeCCCcccccCcccCCccccCCCCcccCccchHHHH
Confidence 34678999999889999999863 3 45589999999999999872 21100 0 1222 24
Q ss_pred HHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCH
Q 019244 242 MALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSL 321 (344)
Q Consensus 242 ~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~~~i 321 (344)
+.+.++++.+ ++|||++|||++++|+.+++++|||+|++||+++. +++ +++.++++++.+|...|++|+
T Consensus 231 ~~i~~i~~~~--~ipvia~GGI~~~~d~~~~l~~GAd~V~vg~~~l~-----~p~----~~~~i~~~l~~~~~~~g~~~~ 299 (311)
T 1ep3_A 231 KLIHQVAQDV--DIPIIGMGGVANAQDVLEMYMAGASAVAVGTANFA-----DPF----VCPKIIDKLPELMDQYRIESL 299 (311)
T ss_dssp HHHHHHHTTC--SSCEEECSSCCSHHHHHHHHHHTCSEEEECTHHHH-----CTT----HHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHhc--CCCEEEECCcCCHHHHHHHHHcCCCEEEECHHHHc-----CcH----HHHHHHHHHHHHHHHcCCCCH
Confidence 6667776655 79999999999999999999999999999999987 333 677889999999999999999
Q ss_pred hhhccc
Q 019244 322 KEITRD 327 (344)
Q Consensus 322 ~~l~~~ 327 (344)
+|+++.
T Consensus 300 ~~~~g~ 305 (311)
T 1ep3_A 300 ESLIQE 305 (311)
T ss_dssp HHHHHH
T ss_pred HHHhCh
Confidence 999764
|
| >1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=99.78 E-value=2.2e-18 Score=172.97 Aligned_cols=142 Identities=24% Similarity=0.405 Sum_probs=119.4
Q ss_pred cHHHHHHHHHhc-CCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCC------CCCchhhHHHHHHHHHHccC-CCcEE
Q 019244 187 SWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ------LDYVPATIMALEEVVKATQG-RIPVF 258 (344)
Q Consensus 187 ~~~~i~~i~~~~-~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~------~~~g~~~~~~l~~i~~~~~~-~~~vi 258 (344)
.|+.++++++.+ ++||+++.+.+.++++.+.++|+|+|+++++||.. ..++.|+...++++.+.++. ++|||
T Consensus 265 ~~e~i~~i~~~~p~~pvi~g~~~t~e~a~~l~~~G~d~I~v~~~~G~~~~~~~~~~~g~p~~~~l~~v~~~~~~~~ipvi 344 (494)
T 1vrd_A 265 VIETLEMIKADYPDLPVVAGNVATPEGTEALIKAGADAVKVGVGPGSICTTRVVAGVGVPQLTAVMECSEVARKYDVPII 344 (494)
T ss_dssp HHHHHHHHHHHCTTSCEEEEEECSHHHHHHHHHTTCSEEEECSSCSTTCHHHHHHCCCCCHHHHHHHHHHHHHTTTCCEE
T ss_pred HHHHHHHHHHHCCCceEEeCCcCCHHHHHHHHHcCCCEEEEcCCCCccccccccCCCCccHHHHHHHHHHHHhhcCCCEE
Confidence 678899999999 79999999999999999999999999998887631 12467888888888877543 79999
Q ss_pred EecCCCCHHHHHHHHHcCCCEEEEchHHHH--------------------Hhhh-----cC--------------hHH--
Q 019244 259 LDGGVRRGTDVFKALALGASGIFIGRPVVY--------------------SLAA-----EG--------------EKG-- 297 (344)
Q Consensus 259 a~GGIr~g~dv~kalalGAd~V~ig~~~l~--------------------~~~~-----~G--------------~~~-- 297 (344)
++|||+++.|+.|++++|||+|++||+|+. ++++ .| .+|
T Consensus 345 a~GGI~~~~di~kala~GAd~V~iGr~~l~~~e~~~~~~~~~~~~~k~~~g~~~~~a~~~g~~~~~~~~~~~~~~~~g~~ 424 (494)
T 1vrd_A 345 ADGGIRYSGDIVKALAAGAESVMVGSIFAGTEEAPGETILYQGRKYKAYRGMGSLGAMRSGSADRYGQEGENKFVPEGIE 424 (494)
T ss_dssp EESCCCSHHHHHHHHHTTCSEEEESHHHHTBTTSSSEEEEETTEEEEECBCCC-------------------------CB
T ss_pred EECCcCCHHHHHHHHHcCCCEEEECHHHhcCCcCCcceEEECCEEEEEEeccchHHHHhhccccchhhcccccccCCcce
Confidence 999999999999999999999999999962 2221 00 233
Q ss_pred --------HHHHHHHHHHHHHHHHHHhCCCCHhhhcccc
Q 019244 298 --------VRRVLEMLREEFELAMALSGCRSLKEITRDH 328 (344)
Q Consensus 298 --------v~~~l~~l~~el~~~m~~~G~~~i~~l~~~~ 328 (344)
+.++++.+..||+..|.++|++++.+|++..
T Consensus 425 ~~~~~~~~v~~~~~~l~~~l~~~~~~~G~~~~~~l~~~~ 463 (494)
T 1vrd_A 425 GMVPYKGTVKDVVHQLVGGLRSGMGYIGARTIKELQEKA 463 (494)
T ss_dssp CCEECCBCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHC
T ss_pred EccCcCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHhhC
Confidence 7899999999999999999999999998654
|
| >1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=3.8e-18 Score=172.14 Aligned_cols=140 Identities=23% Similarity=0.316 Sum_probs=110.6
Q ss_pred CcHHHHHHHHHhc-CCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCC------CCCchhhH---HHHHHHHHHccCCC
Q 019244 186 LSWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ------LDYVPATI---MALEEVVKATQGRI 255 (344)
Q Consensus 186 ~~~~~i~~i~~~~-~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~------~~~g~~~~---~~l~~i~~~~~~~~ 255 (344)
+.++.++++++.+ ++||++|.+.+.++|+.+.++|+|+|++++++|.. .++|.++. ..+.++++.+ ++
T Consensus 282 ~~~~~i~~i~~~~~~~pvi~~~v~t~~~a~~l~~aGad~I~vg~~~G~~~~t~~~~~~g~~~~~~~~~~~~~~~~~--~i 359 (514)
T 1jcn_A 282 YQIAMVHYIKQKYPHLQVIGGNVVTAAQAKNLIDAGVDGLRVGMGCGSICITQEVMACGRPQGTAVYKVAEYARRF--GV 359 (514)
T ss_dssp HHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHHTCSEEEECSSCSCCBTTBCCCSCCCCHHHHHHHHHHHHGGG--TC
T ss_pred hHHHHHHHHHHhCCCCceEecccchHHHHHHHHHcCCCEEEECCCCCcccccccccCCCccchhHHHHHHHHHhhC--CC
Confidence 3468899999999 89999999999999999999999999997654421 22454444 4445554443 79
Q ss_pred cEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH--------------------Hhhhc---------------------C
Q 019244 256 PVFLDGGVRRGTDVFKALALGASGIFIGRPVVY--------------------SLAAE---------------------G 294 (344)
Q Consensus 256 ~via~GGIr~g~dv~kalalGAd~V~ig~~~l~--------------------~~~~~---------------------G 294 (344)
|||++|||+++.|+.|++++||++|++||+|+. +++.. +
T Consensus 360 pVia~GGI~~~~di~kala~GAd~V~iG~~~l~~~e~~~~~~~~~g~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~ 439 (514)
T 1jcn_A 360 PIIADGGIQTVGHVVKALALGASTVMMGSLLAATTEAPGEYFFSDGVRLKKYRGMGSLDAMEKSSSSQKRYFSEGDKVKI 439 (514)
T ss_dssp CEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTSTTSSCC----------------------------------------
T ss_pred CEEEECCCCCHHHHHHHHHcCCCeeeECHHHHcCCcCCcceEeECCEEEEEecCcCCHHHHhhccccchhhcccccccee
Confidence 999999999999999999999999999998853 22110 2
Q ss_pred hHHH----------HHHHHHHHHHHHHHHHHhCCCCHhhhccc
Q 019244 295 EKGV----------RRVLEMLREEFELAMALSGCRSLKEITRD 327 (344)
Q Consensus 295 ~~~v----------~~~l~~l~~el~~~m~~~G~~~i~~l~~~ 327 (344)
++|+ .++++.|..||+..|.++|+++++||++.
T Consensus 440 ~~gv~~~~~~~g~~~~~i~~l~~~l~~~m~~~G~~~i~~l~~~ 482 (514)
T 1jcn_A 440 AQGVSGSIQDKGSIQKFVPYLIAGIQHGCQDIGARSLSVLRSM 482 (514)
T ss_dssp ----------CCCHHHHHHHHHHHHHHHHHHHTCSBHHHHHHH
T ss_pred cccceecCCCcccHHHHHHHHHHHHHHHHHhhCcccHHHHHhh
Confidence 2444 89999999999999999999999999874
|
| >3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.1e-17 Score=156.29 Aligned_cols=132 Identities=17% Similarity=0.180 Sum_probs=102.4
Q ss_pred HHHHHHHHHhcCCcEEEEeec--C-HHHHHHHHHcCCcEEEEcc---C--------CCC-CC-----C---Cchh----h
Q 019244 188 WKDVKWLQTITKLPILVKGVL--T-AEDARIAVQAGAAGIIVSN---H--------GAR-QL-----D---YVPA----T 240 (344)
Q Consensus 188 ~~~i~~i~~~~~~PvivK~v~--~-~~~a~~~~~~G~d~I~v~~---~--------gG~-~~-----~---~g~~----~ 240 (344)
.+.++++++.+++||+||... + .+.++.+.++|+++|++.| . ..+ .+ . .|++ +
T Consensus 182 ~~il~av~~~~~~PV~vKi~p~~~~~~~a~~~~~aga~~i~~int~nt~g~~~~i~~~~~~~~~~~~~gGlSG~ai~p~a 261 (345)
T 3oix_A 182 DQILSEVFTYFTKPLGIKLPPYFDIVHFDQAAAIFNXYPLTFVNCINSIGNGLVIEDETVVIXPKNGFGGIGGDYVKPTA 261 (345)
T ss_dssp HHHHHHHTTTCCSCEEEEECCCCCHHHHHHHHHHHTTSCCSEEEECCCEEEEECEETTEESCSGGGGEEEEEEGGGHHHH
T ss_pred HHHHHHHHHHhCCCeEEEECCCCCHHHHHHHHHHhCCCceEEEEeecccccceeeccCccccccccccCCcCCccccHHH
Confidence 456888888889999999974 3 3457778888887664322 1 111 01 0 1232 3
Q ss_pred HHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCC
Q 019244 241 IMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRS 320 (344)
Q Consensus 241 ~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~~~ 320 (344)
++.+.++++.+++++|||++|||+|++|+.+++++|||+|++||+|++. |+ .+++.+.++|+.+|...|+++
T Consensus 262 ~~~v~~i~~~~~~~ipIIg~GGI~s~~da~~~l~aGAd~V~igra~~~~----gP----~~~~~i~~~L~~~l~~~G~~s 333 (345)
T 3oix_A 262 LANVHAFYKRLNPSIQIIGTGGVXTGRDAFEHILCGASMVQIGTALHQE----GP----QIFKRITKELXAIMTEKGYET 333 (345)
T ss_dssp HHHHHHHHTTSCTTSEEEEESSCCSHHHHHHHHHHTCSEEEESHHHHHH----CT----HHHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHcCCCCcEEEECCCCChHHHHHHHHhCCCEEEEChHHHhc----Ch----HHHHHHHHHHHHHHHHcCCCC
Confidence 5678888877766899999999999999999999999999999997763 55 377889999999999999999
Q ss_pred Hhhhccc
Q 019244 321 LKEITRD 327 (344)
Q Consensus 321 i~~l~~~ 327 (344)
++|+++.
T Consensus 334 i~e~~G~ 340 (345)
T 3oix_A 334 LEDFRGK 340 (345)
T ss_dssp GGGTTTC
T ss_pred HHHHHhH
Confidence 9999875
|
| >1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=99.74 E-value=4.9e-17 Score=155.49 Aligned_cols=214 Identities=17% Similarity=0.200 Sum_probs=135.0
Q ss_pred CCCcceeecccccccceeecccccccccCChhhHHHHHHHHHcCCccc-----c----------------CCH-------
Q 019244 58 KIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMV-----Y----------------KDR------- 109 (344)
Q Consensus 58 ~vd~st~l~g~~l~~Pi~iapm~~~~~~~~~~~~~lA~aA~~~g~~~~-----~----------------~d~------- 109 (344)
.+|++++++|.+++.||+++++ + ++.++ +++++++.|+.++ . .|.
T Consensus 42 ~~~l~~~i~g~~l~npi~~aag-~----~~~~~--~~~~~a~~G~g~i~~~~~~~~~~~g~~~pr~~~~~~d~~~in~~g 114 (336)
T 1f76_A 42 VPAKPVNCMGLTFKNPLGLAAG-L----DKDGE--CIDALGAMGFGSIEIGTVTPRPQPGNDKPRLFRLVDAEGLINRMG 114 (336)
T ss_dssp CCCCCEEETTEEESSSEEECTT-S----STTCC--CHHHHHHTTCSEEEEEEECSSCBCCSCSCCEEEETTTTEEEECCC
T ss_pred CCCCCeEECCEEcCCCcEeCcc-c----CCcHH--HHHHHHHcCccEEEeCCCCCCCCCCCCCcceeeccccceeeecCC
Confidence 4899999999999999999963 2 23333 7777888888761 0 001
Q ss_pred ---HHHHHHHHHHHHcCCc-EEEeccCCcc---ccccHHHHHhhcC-CCCcccccccccccccccccccchhhHHHHhhc
Q 019244 110 ---NVVAQLVRRAERAGFK-AIALTVDTPR---LGRREADIKNRFT-LPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQ 181 (344)
Q Consensus 110 ---~~~~~~i~~a~~ag~~-~l~~tvd~~~---~g~r~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (344)
.-.+.+++++++.+++ .+.+++.... ......+....+. ...+ .+.++.+... ...++ ....
T Consensus 115 ~~~~g~~~~~~~~~~~~~~~~~~v~i~~~~~~~i~~~~~~~~~aa~~~~~g-----~d~iein~~s-P~~~g-~~~~--- 184 (336)
T 1f76_A 115 FNNLGVDNLVENVKKAHYDGVLGINIGKNKDTPVEQGKDDYLICMEKIYAY-----AGYIAINISS-PNTPG-LRTL--- 184 (336)
T ss_dssp CCBCCHHHHHHHHHHCCCCSEEEEEECCCTTSCGGGTHHHHHHHHHHHGGG-----CSEEEEECCC-SSSTT-GGGG---
T ss_pred CCCcCHHHHHHHHHhcccCCcEEEEecCCCCCcccccHHHHHHHHHHHhcc-----CCEEEEEccC-CCCCC-cccc---
Confidence 1124566666666554 5666653211 0011222222211 0001 1111100000 00011 1111
Q ss_pred CCCCCcHHHHHHHHHhc---------CCcEEEEeec--CHH----HHHHHHHcCCcEEEEccCC-CCC---------CCC
Q 019244 182 IDRSLSWKDVKWLQTIT---------KLPILVKGVL--TAE----DARIAVQAGAAGIIVSNHG-ARQ---------LDY 236 (344)
Q Consensus 182 ~~~~~~~~~i~~i~~~~---------~~PvivK~v~--~~~----~a~~~~~~G~d~I~v~~~g-G~~---------~~~ 236 (344)
.+..+.++.++++++.+ ++||++|... +.+ .++.+.++|+|+|+++|++ +++ ..+
T Consensus 185 ~~~~~~~~il~~vr~~~~~~~~~~g~~~Pv~vKi~~~~~~~~~~~~a~~l~~~Gvd~i~vsn~~~~~~~~~~~~~~~~~g 264 (336)
T 1f76_A 185 QYGEALDDLLTAIKNKQNDLQAMHHKYVPIAVKIAPDLSEEELIQVADSLVRHNIDGVIATNTTLDRSLVQGMKNCDQTG 264 (336)
T ss_dssp GSHHHHHHHHHHHHHHHHHHHHHHTSCCCEEEECCSCCCHHHHHHHHHHHHHTTCSEEEECCCBCCCTTSTTSTTTTCSS
T ss_pred cCHHHHHHHHHHHHHHHHhhhhcccccCceEEEecCCCCHHHHHHHHHHHHHcCCcEEEEeCCcccccccccccccccCC
Confidence 12445678899999988 8999999873 333 3789999999999999874 322 011
Q ss_pred ---ch----hhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 237 ---VP----ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 237 ---g~----~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
|+ .+++.+.++++.+++++|||++|||+|+.|+.++|++|||+|++||++++
T Consensus 265 g~~g~~~~~~~~~~i~~i~~~~~~~ipVi~~GGI~~~~da~~~l~~GAd~V~igr~~l~ 323 (336)
T 1f76_A 265 GLSGRPLQLKSTEIIRRLSLELNGRLPIIGVGGIDSVIAAREKIAAGASLVQIYSGFIF 323 (336)
T ss_dssp EEEEGGGHHHHHHHHHHHHHHHTTSSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHH
T ss_pred CcCCchhHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHCCCCEEEeeHHHHh
Confidence 22 24567888888776689999999999999999999999999999999997
|
| >1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.5e-17 Score=166.79 Aligned_cols=144 Identities=16% Similarity=0.248 Sum_probs=120.5
Q ss_pred cHHHHHHHHHhc-CCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCC------CCCchhhHHHHHHHHHHcc-CCCcEE
Q 019244 187 SWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ------LDYVPATIMALEEVVKATQ-GRIPVF 258 (344)
Q Consensus 187 ~~~~i~~i~~~~-~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~------~~~g~~~~~~l~~i~~~~~-~~~~vi 258 (344)
.|+.++++++.+ ++|++.+++.+.++++.+.++|+|+|.+++.+|+. ..++.|+++.+.+++.... .++|||
T Consensus 261 ~~~~i~~l~~~~p~~pvi~G~v~t~~~a~~~~~~Gad~I~vg~g~g~~~~tr~~~~~~~p~~~~l~~~~~~~~~~~ipvi 340 (491)
T 1zfj_A 261 VLRKIAEIRAHFPNRTLIAGNIATAEGARALYDAGVDVVKVGIGPGSICTTRVVAGVGVPQVTAIYDAAAVAREYGKTII 340 (491)
T ss_dssp HHHHHHHHHHHCSSSCEEEEEECSHHHHHHHHHTTCSEEEECSSCCTTBCHHHHTCCCCCHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHCCCCcEeCCCccCHHHHHHHHHcCCCEEEECccCCcceEEeeecCCCCCcHHHHHHHHHHHhhcCCCEE
Confidence 567899999999 89999999999999999999999999998765542 2356778888888877543 379999
Q ss_pred EecCCCCHHHHHHHHHcCCCEEEEchHHHH--------------------HhhhcC----------------------hH
Q 019244 259 LDGGVRRGTDVFKALALGASGIFIGRPVVY--------------------SLAAEG----------------------EK 296 (344)
Q Consensus 259 a~GGIr~g~dv~kalalGAd~V~ig~~~l~--------------------~~~~~G----------------------~~ 296 (344)
++|||+++.|++|++++||++|++|++|+. +++..+ .+
T Consensus 341 a~GGi~~~~di~kal~~GA~~v~vG~~~~~~~e~~~~~~~~~g~~~k~~~g~~~~~a~~~~~~~~~~~g~~~~~~~~~~~ 420 (491)
T 1zfj_A 341 ADGGIKYSGDIVKALAAGGNAVMLGSMFAGTDEAPGETEIYQGRKYKTYRGMGSIAAMKKGSSDRYFQGSVNEANKLVPE 420 (491)
T ss_dssp EESCCCSHHHHHHHHHTTCSEEEESTTTTTBSSCCCCEEEETTEEEEEEECTTSHHHHCC--------------CCCCCS
T ss_pred eeCCCCCHHHHHHHHHcCCcceeeCHHhhCCCcCcceEEEECCEEEEEEecccCHHHHhccccccccccccccccccCcC
Confidence 999999999999999999999999999972 211100 22
Q ss_pred H----------HHHHHHHHHHHHHHHHHHhCCCCHhhhccccee
Q 019244 297 G----------VRRVLEMLREEFELAMALSGCRSLKEITRDHIV 330 (344)
Q Consensus 297 ~----------v~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l~ 330 (344)
| +.++++.|..||+..|.++|++++.+|+.....
T Consensus 421 g~~~~~~~~~~~~~~~~~l~~~l~~~~~~~G~~~~~~l~~~~~~ 464 (491)
T 1zfj_A 421 GIEGRVAYKGAASDIVFQMLGGIRSGMGYVGAGDIQELHENAQF 464 (491)
T ss_dssp BCEEEEECCBCHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHCCE
T ss_pred cceEecCcCCCHHHHHHHHHHHHHHHhhhcCcccHHHHHhcCcE
Confidence 3 899999999999999999999999999866443
|
| >3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ... | Back alignment and structure |
|---|
Probab=99.73 E-value=3.6e-16 Score=151.02 Aligned_cols=132 Identities=23% Similarity=0.323 Sum_probs=105.7
Q ss_pred HHHHHHHHh-------cCCcEEEEeec--CH----HHHHHHHHcCCcEEEEccCC-CCC---------CCC---ch----
Q 019244 189 KDVKWLQTI-------TKLPILVKGVL--TA----EDARIAVQAGAAGIIVSNHG-ARQ---------LDY---VP---- 238 (344)
Q Consensus 189 ~~i~~i~~~-------~~~PvivK~v~--~~----~~a~~~~~~G~d~I~v~~~g-G~~---------~~~---g~---- 238 (344)
+.++.+++. +++||+||+.. +. +.|+.+.++|+|+|+++|+. ++. ..+ |+
T Consensus 203 ~ll~av~~~~~~~~~~~~~Pv~vKi~p~~~~~~~~~ia~~~~~aGadgi~v~ntt~~r~~~~~~~~~~~~gGlSG~~i~p 282 (367)
T 3zwt_A 203 RLLTKVLQERDGLRRVHRPAVLVKIAPDLTSQDKEDIASVVKELGIDGLIVTNTTVSRPAGLQGALRSETGGLSGKPLRD 282 (367)
T ss_dssp HHHHHHHHHHHTSCGGGCCEEEEEECSCCCHHHHHHHHHHHHHHTCCEEEECCCBSCCCTTCCCTTTTSSSEEEEGGGHH
T ss_pred HHHHHHHHHHhhccccCCceEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcccccccccccccccCCcCCcccch
Confidence 345555543 68999999973 33 34788999999999999864 221 012 22
Q ss_pred hhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCC
Q 019244 239 ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGC 318 (344)
Q Consensus 239 ~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~ 318 (344)
.+++.+.++++.+++++|||++|||+|++|+.+++++|||+|++||++++. |+ .+++.+.++|+.+|...|+
T Consensus 283 ~a~~~v~~i~~~v~~~ipvI~~GGI~s~~da~~~l~~GAd~V~vgra~l~~----gP----~~~~~i~~~l~~~m~~~G~ 354 (367)
T 3zwt_A 283 LSTQTIREMYALTQGRVPIIGVGGVSSGQDALEKIRAGASLVQLYTALTFW----GP----PVVGKVKRELEALLKEQGF 354 (367)
T ss_dssp HHHHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHHH----CT----HHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHcCCCceEEEECCCCCHHHHHHHHHcCCCEEEECHHHHhc----Cc----HHHHHHHHHHHHHHHHcCC
Confidence 245788888888877899999999999999999999999999999999873 55 3778899999999999999
Q ss_pred CCHhhhcccc
Q 019244 319 RSLKEITRDH 328 (344)
Q Consensus 319 ~~i~~l~~~~ 328 (344)
++++|+.+..
T Consensus 355 ~~i~e~~G~~ 364 (367)
T 3zwt_A 355 GGVTDAIGAD 364 (367)
T ss_dssp SSHHHHTTGG
T ss_pred CCHHHhhCcc
Confidence 9999998753
|
| >3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=3.7e-16 Score=152.27 Aligned_cols=122 Identities=25% Similarity=0.322 Sum_probs=102.1
Q ss_pred CCc-EEEEeec--CH----HHHHHHHHcCCcEEEEccCCCCCCC--------C---ch----hhHHHHHHHHHHccCCCc
Q 019244 199 KLP-ILVKGVL--TA----EDARIAVQAGAAGIIVSNHGARQLD--------Y---VP----ATIMALEEVVKATQGRIP 256 (344)
Q Consensus 199 ~~P-vivK~v~--~~----~~a~~~~~~G~d~I~v~~~gG~~~~--------~---g~----~~~~~l~~i~~~~~~~~~ 256 (344)
++| |+||+.. +. +.|+.+.++|+|+|+++|+...+.+ + |+ .+++.+.++++.+++++|
T Consensus 268 ~~P~V~VKi~pd~~~~~i~~iA~~a~~aGaDgIiv~Ntt~~r~dl~~~~~~~GGlSG~a~~p~al~~I~~v~~~v~~~iP 347 (415)
T 3i65_A 268 KKPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIP 347 (415)
T ss_dssp SCCEEEEEECSCCCHHHHHHHHHHHHHHTCSEEEECCCBSCCCCCGGGTTCCSEEEEGGGHHHHHHHHHHHHHHTTTCSC
T ss_pred CCCeEEEEecCCCCHHHHHHHHHHHHHcCCcEEEEeCCCcccccccccccccCCcCCccchHHHHHHHHHHHHHhCCCCC
Confidence 689 9999974 32 3478899999999999998654322 1 22 345788899888877899
Q ss_pred EEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHhhhcccc
Q 019244 257 VFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDH 328 (344)
Q Consensus 257 via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~~~i~~l~~~~ 328 (344)
||++|||+|++|+.+++++|||+|++||++++. |+. +++.+.++|+.+|...|+++++|+++..
T Consensus 348 IIg~GGI~s~eDa~e~l~aGAd~VqIgra~l~~----GP~----~~~~i~~~L~~~l~~~G~~si~e~~G~~ 411 (415)
T 3i65_A 348 IIASGGIFSGLDALEKIEAGASVCQLYSCLVFN----GMK----SAVQIKRELNHLLYQRGYYNLKEAIGRK 411 (415)
T ss_dssp EEECSSCCSHHHHHHHHHHTEEEEEESHHHHHH----GGG----HHHHHHHHHHHHHHHTTCSSSTTTTTTT
T ss_pred EEEECCCCCHHHHHHHHHcCCCEEEEcHHHHhc----CHH----HHHHHHHHHHHHHHHcCCCCHHHHhChh
Confidence 999999999999999999999999999999974 443 6788999999999999999999998753
|
| >3tjx_A Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh, oxidored mutation H174A; HET: FMN; 1.64A {Leishmania major} PDB: 3gz3_A* 3gye_A* 3tro_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.5e-15 Score=146.17 Aligned_cols=131 Identities=19% Similarity=0.112 Sum_probs=93.9
Q ss_pred HHHHHHHHhcCCcEEEEeec--CH----HHHHHHHHcC-CcEEEEccCCCC-------------------CCCCchhhH-
Q 019244 189 KDVKWLQTITKLPILVKGVL--TA----EDARIAVQAG-AAGIIVSNHGAR-------------------QLDYVPATI- 241 (344)
Q Consensus 189 ~~i~~i~~~~~~PvivK~v~--~~----~~a~~~~~~G-~d~I~v~~~gG~-------------------~~~~g~~~~- 241 (344)
+.++++++..+.|+.+|... +. ..+..+.+.+ ++.+...++-.. +...|++..
T Consensus 183 ~i~~~v~~~~~~pv~vK~~p~~~~~~~~~~~~~~~~~~~~~~i~~i~t~~~~~~id~~~~~~~~~~~~~~GGlSG~~~~~ 262 (354)
T 3tjx_A 183 QCLTAVSEVYPHSFGVKMPPYFDFAAFDAAAEILNEFPKVQFITCINSIGNGLVIDAETESVVIKPKQGFGGLGGRYVLP 262 (354)
T ss_dssp HHHHHHHHHCCSCEEEEECCCCSHHHHHHHHHHHHTCTTEEEEEECCCEEEEECEETTTTEESCSGGGGEEEEEGGGGHH
T ss_pred HHHHHHHHHhhcccccccCCCCCchhHHHHHHHHHhhcccchhheecccccccccccccccccccCcccccccCchhhHH
Confidence 45788888889999999873 22 1233344443 444443332110 001244433
Q ss_pred ---HHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCC
Q 019244 242 ---MALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGC 318 (344)
Q Consensus 242 ---~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~ 318 (344)
..+.++++.. .++|||++|||.|++|++++|.+||++||++|.++|. |+. +++.+.+||+.+|...|+
T Consensus 263 ~a~~~v~~~~~~~-~~~pIIg~GGI~s~~Da~e~i~aGAs~Vqv~Ta~~y~----GP~----~~~~I~~~L~~~L~~~G~ 333 (354)
T 3tjx_A 263 TALANINAFYRRC-PGKLIFGCGGVYTGEDAFLHVLAGASMVQVGTALQEE----GPS----IFERLTSELLGVMAKKRY 333 (354)
T ss_dssp HHHHHHHHHHHHC-TTSEEEEESSCCSHHHHHHHHHHTEEEEEECHHHHHH----CTT----HHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhc-CCCcEEEeCCcCCHHHHHHHHHcCCCEEEEChhhhhc----Cch----HHHHHHHHHHHHHHHcCC
Confidence 3445555544 3799999999999999999999999999999999873 653 678899999999999999
Q ss_pred CCHhhhcccc
Q 019244 319 RSLKEITRDH 328 (344)
Q Consensus 319 ~~i~~l~~~~ 328 (344)
+|++|+++..
T Consensus 334 ~si~e~~G~~ 343 (354)
T 3tjx_A 334 QTLDEFRGKV 343 (354)
T ss_dssp CSGGGTTTCC
T ss_pred CCHHHHhChh
Confidence 9999998764
|
| >1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=1.4e-16 Score=151.38 Aligned_cols=142 Identities=23% Similarity=0.277 Sum_probs=109.9
Q ss_pred CCCCcHHHHHHHHHhcCCcEEEEeec------CHHHHHHHHHcCCcEEEEccCCCCCCC--CchhhHHHHHHHHHHccCC
Q 019244 183 DRSLSWKDVKWLQTITKLPILVKGVL------TAEDARIAVQAGAAGIIVSNHGARQLD--YVPATIMALEEVVKATQGR 254 (344)
Q Consensus 183 ~~~~~~~~i~~i~~~~~~PvivK~v~------~~~~a~~~~~~G~d~I~v~~~gG~~~~--~g~~~~~~l~~i~~~~~~~ 254 (344)
++.+.++.++++++.+++||++|... +.+.++.+.++|+|+|+|+ |++..+ .+++.++.+.++++ +
T Consensus 110 ~~~~~~eiv~~v~~~~~~pv~vKir~G~~~~~~~~~a~~l~~~G~d~i~v~--g~~~~~~~~~~~~~~~i~~i~~----~ 183 (318)
T 1vhn_A 110 DLRHFRYIVRELRKSVSGKFSVKTRLGWEKNEVEEIYRILVEEGVDEVFIH--TRTVVQSFTGRAEWKALSVLEK----R 183 (318)
T ss_dssp CHHHHHHHHHHHHHHCSSEEEEEEESCSSSCCHHHHHHHHHHTTCCEEEEE--SSCTTTTTSSCCCGGGGGGSCC----S
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEecCCCChHHHHHHHHHHHHhCCCEEEEc--CCCccccCCCCcCHHHHHHHHc----C
Confidence 34557889999999999999999642 2377999999999999995 444322 34455555555443 7
Q ss_pred CcEEEecCCCCHHHHHHHHH-cCCCEEEEchHHHH-----Hhhhc----Ch---HHHHHHHHHHHHHHHHHHHHhCCC-C
Q 019244 255 IPVFLDGGVRRGTDVFKALA-LGASGIFIGRPVVY-----SLAAE----GE---KGVRRVLEMLREEFELAMALSGCR-S 320 (344)
Q Consensus 255 ~~via~GGIr~g~dv~kala-lGAd~V~ig~~~l~-----~~~~~----G~---~~v~~~l~~l~~el~~~m~~~G~~-~ 320 (344)
+|||++|||+|++|+.++++ .|||+|++||+++. ..... |. .++.+.++.+.++++..|.+.|.+ .
T Consensus 184 ipVi~~GgI~s~~da~~~l~~~gad~V~iGR~~l~~P~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 263 (318)
T 1vhn_A 184 IPTFVSGDIFTPEDAKRALEESGCDGLLVARGAIGRPWIFKQIKDFLRSGKYSEPSREEILRTFERHLELLIKTKGERKA 263 (318)
T ss_dssp SCEEEESSCCSHHHHHHHHHHHCCSEEEESGGGTTCTTHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred CeEEEECCcCCHHHHHHHHHcCCCCEEEECHHHHhCcchHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHhcCchHH
Confidence 99999999999999999999 89999999998753 22211 42 467788999999999999999975 7
Q ss_pred Hhhhccccee
Q 019244 321 LKEITRDHIV 330 (344)
Q Consensus 321 i~~l~~~~l~ 330 (344)
+.++++....
T Consensus 264 ~~~~~~~~~~ 273 (318)
T 1vhn_A 264 VVEMRKFLAG 273 (318)
T ss_dssp HHHHHTTHHH
T ss_pred HHHHHHHHHH
Confidence 8888876544
|
| >1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=5.6e-15 Score=145.63 Aligned_cols=123 Identities=24% Similarity=0.333 Sum_probs=101.5
Q ss_pred cCCc-EEEEeec--CHHH----HHHHHHcCCcEEEEccCCCCCCC--------C---chh----hHHHHHHHHHHccCCC
Q 019244 198 TKLP-ILVKGVL--TAED----ARIAVQAGAAGIIVSNHGARQLD--------Y---VPA----TIMALEEVVKATQGRI 255 (344)
Q Consensus 198 ~~~P-vivK~v~--~~~~----a~~~~~~G~d~I~v~~~gG~~~~--------~---g~~----~~~~l~~i~~~~~~~~ 255 (344)
.++| |++|+.. +.++ |+.+.++|+|+|+++|+.....+ + |++ +++.+.++++.+++++
T Consensus 295 ~~~P~V~vKispd~~~ed~~~iA~~~~~aGaDgI~v~ntt~~~~d~~~~~~~~GGlSG~~~~~~sl~~i~~v~~~v~~~i 374 (443)
T 1tv5_A 295 KKKPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQI 374 (443)
T ss_dssp SSCCEEEEEECSCCCHHHHHHHHHHHHHTTCSEEEECCCBSCCCCCGGGTTCCSEEEEHHHHHHHHHHHHHHHHHTTTCS
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEECCCcccccccccccccCCcCCCcchHHHHHHHHHHHHHcCCCC
Confidence 4689 9999873 4334 88999999999999997653222 1 222 4577888888886689
Q ss_pred cEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHhhhcccc
Q 019244 256 PVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDH 328 (344)
Q Consensus 256 ~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~~~i~~l~~~~ 328 (344)
|||++|||+|+.|+.++|++|||+|++||++++. |+ .+++.+.+++..+|...|+++++|+.+..
T Consensus 375 PVIg~GGI~s~~DA~e~l~aGAd~Vqigrall~~----gP----~l~~~i~~~l~~~l~~~G~~si~e~~G~~ 439 (443)
T 1tv5_A 375 PIIASGGIFSGLDALEKIEAGASVCQLYSCLVFN----GM----KSAVQIKRELNHLLYQRGYYNLKEAIGRK 439 (443)
T ss_dssp CEEEESSCCSHHHHHHHHHTTEEEEEESHHHHHH----GG----GHHHHHHHHHHHHHHHHTCSSSGGGTTTT
T ss_pred cEEEECCCCCHHHHHHHHHcCCCEEEEcHHHHhc----Ch----HHHHHHHHHHHHHHHHhCCCCHHHHhhhh
Confidence 9999999999999999999999999999999973 34 36788999999999999999999998764
|
| >3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8} | Back alignment and structure |
|---|
Probab=99.54 E-value=1e-13 Score=131.98 Aligned_cols=197 Identities=20% Similarity=0.247 Sum_probs=126.5
Q ss_pred Ccceeecc-cccccceeecccccccccCChhhHHHHHHHHHcCCcc----ccCCHHHHHHHHHHHHHcCCcEEEeccCCc
Q 019244 60 DMNTTVLG-FKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM----VYKDRNVVAQLVRRAERAGFKAIALTVDTP 134 (344)
Q Consensus 60 d~st~l~g-~~l~~Pi~iapm~~~~~~~~~~~~~lA~aA~~~g~~~----~~~d~~~~~~~i~~a~~ag~~~l~~tvd~~ 134 (344)
.++|.|.. ..++.||+.+||++ .. +..+|.++.++|... -..+++...+.++++++..-..+.+++...
T Consensus 14 ~~~t~~~~~l~~~~Pii~apM~g--vs----~~~la~av~~aGglG~i~~~~~~~~~l~~~i~~i~~~~~~p~gVnl~~~ 87 (326)
T 3bo9_A 14 TVRTRVTDLLEIEHPILMGGMAW--AG----TPTLAAAVSEAGGLGIIGSGAMKPDDLRKAISELRQKTDKPFGVNIILV 87 (326)
T ss_dssp CCCCHHHHHHTCSSSEEECCCTT--TS----CHHHHHHHHHTTSBEEEECTTCCHHHHHHHHHHHHTTCSSCEEEEEETT
T ss_pred eecchhHHhcCCCCCEEECCCCC--CC----CHHHHHHHHhCCCcEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecc
Confidence 34444432 46678999999984 33 346999999998644 234677777778877754212222222111
Q ss_pred cccccHHHHHhhcCCCCcccccccccccccccccccchhhHHHHhhcCCCCCcHHHHHHHHHhcCCcEEEEeecCHHHHH
Q 019244 135 RLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDAR 214 (344)
Q Consensus 135 ~~g~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~PvivK~v~~~~~a~ 214 (344)
.. .....+.... ....+.+. ...++ ..+.++++++ .++|++++ +.+.++++
T Consensus 88 ~~-~~~~~~~~~~------------~~g~d~V~-----------l~~g~---p~~~~~~l~~-~g~~v~~~-v~s~~~a~ 138 (326)
T 3bo9_A 88 SP-WADDLVKVCI------------EEKVPVVT-----------FGAGN---PTKYIRELKE-NGTKVIPV-VASDSLAR 138 (326)
T ss_dssp ST-THHHHHHHHH------------HTTCSEEE-----------EESSC---CHHHHHHHHH-TTCEEEEE-ESSHHHHH
T ss_pred CC-CHHHHHHHHH------------HCCCCEEE-----------ECCCC---cHHHHHHHHH-cCCcEEEE-cCCHHHHH
Confidence 00 0011110000 00000000 00111 2345777776 47888764 68899999
Q ss_pred HHHHcCCcEEEEcc--CCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhh
Q 019244 215 IAVQAGAAGIIVSN--HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAA 292 (344)
Q Consensus 215 ~~~~~G~d~I~v~~--~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~ 292 (344)
.+.++|+|+|++++ +||+. +..+++..++++++.+ ++|||++|||+++.|+.+++++||++|++||.|+....+
T Consensus 139 ~a~~~GaD~i~v~g~~~GG~~--G~~~~~~ll~~i~~~~--~iPviaaGGI~~~~dv~~al~~GA~gV~vGs~~~~~~e~ 214 (326)
T 3bo9_A 139 MVERAGADAVIAEGMESGGHI--GEVTTFVLVNKVSRSV--NIPVIAAGGIADGRGMAAAFALGAEAVQMGTRFVASVES 214 (326)
T ss_dssp HHHHTTCSCEEEECTTSSEEC--CSSCHHHHHHHHHHHC--SSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHTBSSC
T ss_pred HHHHcCCCEEEEECCCCCccC--CCccHHHHHHHHHHHc--CCCEEEECCCCCHHHHHHHHHhCCCEEEechHHHcCccc
Confidence 99999999999987 45542 1346888899988876 799999999999999999999999999999999876444
Q ss_pred cCh
Q 019244 293 EGE 295 (344)
Q Consensus 293 ~G~ 295 (344)
.+.
T Consensus 215 ~~~ 217 (326)
T 3bo9_A 215 DVH 217 (326)
T ss_dssp CSC
T ss_pred ccc
Confidence 333
|
| >2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=8.2e-13 Score=125.74 Aligned_cols=106 Identities=17% Similarity=0.246 Sum_probs=85.2
Q ss_pred HHHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccC--CCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCC
Q 019244 188 WKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 265 (344)
Q Consensus 188 ~~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~--gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~ 265 (344)
++.++++++. ++|++.+ +.+.++++.+.++|+|+|++++. ||+.-....++++.++++++.+ ++||+++|||++
T Consensus 108 ~~~~~~l~~~-gi~vi~~-v~t~~~a~~~~~~GaD~i~v~g~~~GG~~G~~~~~~~~~l~~v~~~~--~iPviaaGGI~~ 183 (328)
T 2gjl_A 108 GEHIAEFRRH-GVKVIHK-CTAVRHALKAERLGVDAVSIDGFECAGHPGEDDIPGLVLLPAAANRL--RVPIIASGGFAD 183 (328)
T ss_dssp HHHHHHHHHT-TCEEEEE-ESSHHHHHHHHHTTCSEEEEECTTCSBCCCSSCCCHHHHHHHHHTTC--CSCEEEESSCCS
T ss_pred HHHHHHHHHc-CCCEEee-CCCHHHHHHHHHcCCCEEEEECCCCCcCCCCccccHHHHHHHHHHhc--CCCEEEECCCCC
Confidence 5678888875 8898865 68899999999999999999763 4442112346788888887765 799999999999
Q ss_pred HHHHHHHHHcCCCEEEEchHHHHHhhhcChHH
Q 019244 266 GTDVFKALALGASGIFIGRPVVYSLAAEGEKG 297 (344)
Q Consensus 266 g~dv~kalalGAd~V~ig~~~l~~~~~~G~~~ 297 (344)
+.|+.+++++||++|++||+|+....+.+.+.
T Consensus 184 ~~~v~~al~~GAdgV~vGs~~~~~~e~~~~~~ 215 (328)
T 2gjl_A 184 GRGLVAALALGADAINMGTRFLATRECPIHPA 215 (328)
T ss_dssp HHHHHHHHHHTCSEEEESHHHHTSSSSCSCHH
T ss_pred HHHHHHHHHcCCCEEEECHHHHcCccccccHH
Confidence 99999999999999999999987654444443
|
| >2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=9.3e-13 Score=125.64 Aligned_cols=183 Identities=21% Similarity=0.259 Sum_probs=119.5
Q ss_pred ecccccccceeecccccccccCChhhHHHHHHHHHcCCc-cc---cCCHHHHHHHHHHHHHcCCcEEEeccCC--ccccc
Q 019244 65 VLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTI-MV---YKDRNVVAQLVRRAERAGFKAIALTVDT--PRLGR 138 (344)
Q Consensus 65 l~g~~l~~Pi~iapm~~~~~~~~~~~~~lA~aA~~~g~~-~~---~~d~~~~~~~i~~a~~ag~~~l~~tvd~--~~~g~ 138 (344)
+|| +..||+.+||++ ... ..++.++.++|.. ++ ..+++...+.++++++..-..+.+++-. |.+
T Consensus 8 ~l~--~~~Pii~apM~g--~s~----~~la~av~~aG~lG~i~~~~~~~~~~~~~i~~i~~~~~~p~gvnl~~~~~~~-- 77 (332)
T 2z6i_A 8 LLK--IDYPIFQGGMAW--VAD----GDLAGAVSKAGGLGIIGGGNAPKEVVKANIDKIKSLTDKPFGVNIMLLSPFV-- 77 (332)
T ss_dssp HHT--CSSSEEECCCTT--TCC----HHHHHHHHHHTSBEEEECTTCCHHHHHHHHHHHHHHCCSCEEEEECTTSTTH--
T ss_pred HhC--CCCCEEeCCCCC--CCc----HHHHHHHHhCCCcEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEecCCCCCH--
Confidence 445 577999999983 333 3588888898863 32 3467766677777665321122233221 111
Q ss_pred cHHHHHhhcCCCCcccccccccccccccccccchhhHHHHhhcCCCCCcHHHHHHHHHhcCCcEEEEeecCHHHHHHHHH
Q 019244 139 READIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQ 218 (344)
Q Consensus 139 r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~PvivK~v~~~~~a~~~~~ 218 (344)
....+... ....+.+.. ..+ ...+.++++++ .++|+++| +.+.++++.+.+
T Consensus 78 -~~~~~~a~------------~~g~d~V~~-----------~~g---~p~~~i~~l~~-~g~~v~~~-v~~~~~a~~~~~ 128 (332)
T 2z6i_A 78 -EDIVDLVI------------EEGVKVVTT-----------GAG---NPSKYMERFHE-AGIIVIPV-VPSVALAKRMEK 128 (332)
T ss_dssp -HHHHHHHH------------HTTCSEEEE-----------CSS---CGGGTHHHHHH-TTCEEEEE-ESSHHHHHHHHH
T ss_pred -HHHHHHHH------------HCCCCEEEE-----------CCC---ChHHHHHHHHH-cCCeEEEE-eCCHHHHHHHHH
Confidence 00000000 000000000 001 11345777776 48999988 578899999999
Q ss_pred cCCcEEEEccC--CCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHh
Q 019244 219 AGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSL 290 (344)
Q Consensus 219 ~G~d~I~v~~~--gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~ 290 (344)
+|+|+|++++. ||+. +..++++.++++++.+ ++|||++|||.++.|+.+++++|||+|++||+|+...
T Consensus 129 ~GaD~i~v~g~~~GG~~--g~~~~~~ll~~i~~~~--~iPViaaGGI~~~~~~~~al~~GAdgV~vGs~~l~~~ 198 (332)
T 2z6i_A 129 IGADAVIAEGMEAGGHI--GKLTTMTLVRQVATAI--SIPVIAAGGIADGEGAAAGFMLGAEAVQVGTRFVVAK 198 (332)
T ss_dssp TTCSCEEEECTTSSEEC--CSSCHHHHHHHHHHHC--SSCEEEESSCCSHHHHHHHHHTTCSEEEECHHHHTBT
T ss_pred cCCCEEEEECCCCCCCC--CCccHHHHHHHHHHhc--CCCEEEECCCCCHHHHHHHHHcCCCEEEecHHHhcCc
Confidence 99999999764 4431 1356778889988877 7999999999999999999999999999999998754
|
| >3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C* | Back alignment and structure |
|---|
Probab=99.47 E-value=2e-12 Score=124.18 Aligned_cols=142 Identities=18% Similarity=0.211 Sum_probs=100.3
Q ss_pred CCcHHHHHHHHHhcCCcEEEEeec----------CHHHHHHHHHcCCcEEEEccCC---CCC----CCCchhhHHHHHHH
Q 019244 185 SLSWKDVKWLQTITKLPILVKGVL----------TAEDARIAVQAGAAGIIVSNHG---ARQ----LDYVPATIMALEEV 247 (344)
Q Consensus 185 ~~~~~~i~~i~~~~~~PvivK~v~----------~~~~a~~~~~~G~d~I~v~~~g---G~~----~~~g~~~~~~l~~i 247 (344)
.+..+.++++++.+++||++|... +.+.++.+.++|+|+|+|++.- |.. ....+..++.+.++
T Consensus 112 ~~~~eiv~av~~~v~~PV~vKiR~g~~~~~~~~~~~~~a~~l~~aG~d~I~V~~r~~~~g~~g~~~~~~~~~~~~~i~~i 191 (350)
T 3b0p_A 112 ARVREILKAMGEAVRVPVTVKMRLGLEGKETYRGLAQSVEAMAEAGVKVFVVHARSALLALSTKANREIPPLRHDWVHRL 191 (350)
T ss_dssp HHHHHHHHHHHHHCSSCEEEEEESCBTTCCCHHHHHHHHHHHHHTTCCEEEEECSCBC----------CCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCceEEEEecCcCccccHHHHHHHHHHHHHcCCCEEEEecCchhcccCcccccCCCcccHHHHHHH
Confidence 445678999999889999999852 1355789999999999996521 110 00112357788888
Q ss_pred HHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhh--------hcC---hHHHHHHHHHHHHHHHHHHHHh
Q 019244 248 VKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA--------AEG---EKGVRRVLEMLREEFELAMALS 316 (344)
Q Consensus 248 ~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~--------~~G---~~~v~~~l~~l~~el~~~m~~~ 316 (344)
++.++ ++|||++|||+|++|+.++++ |||+|++||+++..-. ..| .....+.++.+.+.++..+. .
T Consensus 192 k~~~~-~iPVianGgI~s~eda~~~l~-GaD~V~iGRa~l~~P~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~ 268 (350)
T 3b0p_A 192 KGDFP-QLTFVTNGGIRSLEEALFHLK-RVDGVMLGRAVYEDPFVLEEADRRVFGLPRRPSRLEVARRMRAYLEEEVL-K 268 (350)
T ss_dssp HHHCT-TSEEEEESSCCSHHHHHHHHT-TSSEEEECHHHHHCGGGGTTHHHHTTCCSCCCCHHHHHHHHHHHHHHHHH-H
T ss_pred HHhCC-CCeEEEECCcCCHHHHHHHHh-CCCEEEECHHHHhCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHH-c
Confidence 87763 799999999999999999998 9999999999864210 012 11244566777777776666 3
Q ss_pred CCCCHhhhccccee
Q 019244 317 GCRSLKEITRDHIV 330 (344)
Q Consensus 317 G~~~i~~l~~~~l~ 330 (344)
|. .+..++++..+
T Consensus 269 g~-~~~~~~kh~~~ 281 (350)
T 3b0p_A 269 GT-PPWAVLRHMLN 281 (350)
T ss_dssp TC-CHHHHHTTSTT
T ss_pred Cc-cHHHHHHHHHH
Confidence 65 57788776544
|
| >3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=4.2e-12 Score=122.81 Aligned_cols=204 Identities=23% Similarity=0.207 Sum_probs=122.3
Q ss_pred ccceeecccccccccCChhhHHHHHHHHHcCCcc----ccCCHHHHHHHHHHHHHcCCcEEEeccCCccc---ccc-HH-
Q 019244 71 SMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM----VYKDRNVVAQLVRRAERAGFKAIALTVDTPRL---GRR-EA- 141 (344)
Q Consensus 71 ~~Pi~iapm~~~~~~~~~~~~~lA~aA~~~g~~~----~~~d~~~~~~~i~~a~~ag~~~l~~tvd~~~~---g~r-~~- 141 (344)
..||+.+||++ ... ...+|.++.++|... -+.+++...+.++++++.--+.+.+++-.+.. ... ..
T Consensus 10 ~~Pii~apMag-gvs----~~~la~av~~aGglG~i~~~~~s~~~l~~~i~~~~~~~~~p~gVnl~~~~~~~~~~~~~~~ 84 (369)
T 3bw2_A 10 PLPIVQAPMAG-GVS----VPQLAAAVCEAGGLGFLAAGYKTADGMYQEIKRLRGLTGRPFGVNVFMPQPELAESGAVEV 84 (369)
T ss_dssp SSSEEECCCTT-TTS----CHHHHHHHHHTTSBEEEECTTSCHHHHHHHHHHHHHHCCSCEEEEEECCCCCC---CHHHH
T ss_pred cCCEEeCCCCC-CCC----cHHHHHHHHHCCCEEEcCCCCCCHHHHHHHHHHHHHhCCCCeEEEEecCCCCcccHHHHHH
Confidence 78999999975 223 346999999998644 24578878788888776322222222211110 000 00
Q ss_pred ------HHHhhcCCCCcccccccccccccccccccchhhHH----HHhhcCCCCCcHHHHHHHHHhcCCcEEEEeecCHH
Q 019244 142 ------DIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAA----YVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAE 211 (344)
Q Consensus 142 ------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~i~~i~~~~~~PvivK~v~~~~ 211 (344)
.....++.+.... .+. ....+. .....+.+ .+.. ......++.++++++. ++|++++ +.+.+
T Consensus 85 ~~~~l~~~~~~~g~~~~~~--~~~--~~~~~~-~~~~~~~~~g~~~V~~-~~g~~~~~~i~~~~~~-g~~v~~~-v~t~~ 156 (369)
T 3bw2_A 85 YAHQLAGEAAWYETELGDP--DGG--RDDGYD-AKLAVLLDDPVPVVSF-HFGVPDREVIARLRRA-GTLTLVT-ATTPE 156 (369)
T ss_dssp HHHHTHHHHHHTTCCCCCS--CSC--SSTTHH-HHHHHHHHSCCSEEEE-ESSCCCHHHHHHHHHT-TCEEEEE-ESSHH
T ss_pred HHHHHHHHHHHcCCCcCcc--ccc--ccccHH-HHHHHHHhcCCCEEEE-eCCCCcHHHHHHHHHC-CCeEEEE-CCCHH
Confidence 0011122221110 000 000000 00000000 0000 0112246788888874 7888765 67899
Q ss_pred HHHHHHHcCCcEEEEccC--CCC---CCCCc------hhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEE
Q 019244 212 DARIAVQAGAAGIIVSNH--GAR---QLDYV------PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGI 280 (344)
Q Consensus 212 ~a~~~~~~G~d~I~v~~~--gG~---~~~~g------~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V 280 (344)
+++.+.++|+|+|.+++. ||+ ..+.. .+++..++++++.+ ++|||++|||.++.++.+++++|||+|
T Consensus 157 ~a~~a~~~GaD~i~v~g~~~GGh~g~~~~~~~~~~~~~~~~~~l~~i~~~~--~iPViaaGGI~~~~~~~~~l~~GAd~V 234 (369)
T 3bw2_A 157 EARAVEAAGADAVIAQGVEAGGHQGTHRDSSEDDGAGIGLLSLLAQVREAV--DIPVVAAGGIMRGGQIAAVLAAGADAA 234 (369)
T ss_dssp HHHHHHHTTCSEEEEECTTCSEECCCSSCCGGGTTCCCCHHHHHHHHHHHC--SSCEEEESSCCSHHHHHHHHHTTCSEE
T ss_pred HHHHHHHcCCCEEEEeCCCcCCcCCCcccccccccccccHHHHHHHHHHhc--CceEEEECCCCCHHHHHHHHHcCCCEE
Confidence 999999999999999763 332 21111 23478888888766 799999999999999999999999999
Q ss_pred EEchHHHHH
Q 019244 281 FIGRPVVYS 289 (344)
Q Consensus 281 ~ig~~~l~~ 289 (344)
++||.|+..
T Consensus 235 ~vGs~~~~~ 243 (369)
T 3bw2_A 235 QLGTAFLAT 243 (369)
T ss_dssp EESHHHHTS
T ss_pred EEChHHhCC
Confidence 999999864
|
| >2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; HET: FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G* | Back alignment and structure |
|---|
Probab=99.22 E-value=3.9e-11 Score=136.42 Aligned_cols=214 Identities=17% Similarity=0.204 Sum_probs=130.3
Q ss_pred eeecccC-CCCCCCcceeecccccccceeecccccccccCChhhHHHHHHHHHcCCccc-----cCCHHHHHHHHHHHHH
Q 019244 48 FRPRILI-DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMV-----YKDRNVVAQLVRRAER 121 (344)
Q Consensus 48 l~pr~l~-~~~~vd~st~l~g~~l~~Pi~iapm~~~~~~~~~~~~~lA~aA~~~g~~~~-----~~d~~~~~~~i~~a~~ 121 (344)
|.||..+ .-.+++++|.|...--..||+.+||+++. . +-.||.|++++|.... +.+++..++.++++++
T Consensus 558 f~prlv~~~~~~~~l~t~~t~~lg~~PIi~a~M~~~v-s----~~~LaaAva~aGglG~i~g~g~~~~e~l~~~i~~vk~ 632 (2060)
T 2uva_G 558 HGPRLVKTSVGQTFVDTKMSRLLGVPPVMVAGMTPTT-V----PWDFVAATMNAGYHIELAGGGYYNAQKMSDAISKIEK 632 (2060)
T ss_dssp HCCEEEECTTCCEEEECHHHHHHTSCSEEECCCTTTT-C----SHHHHHHHHHTTCEECEEGGGCCSHHHHHHHHHHHGG
T ss_pred cCCcceecCCCceecchhhhhccccceEEecCCCCcc-c----cHHHHHHHHHCCCEEEECcCCCCCHHHHHHHHHHHHh
Confidence 4566553 22346677665332116899999998432 2 3359999999998763 3578888888888876
Q ss_pred cC--CcEEEeccCC--ccccccHHHHHhhcCCCCcccccccccccccccccccchhhHHHHhhcCCCCCcHHH-HHHHHH
Q 019244 122 AG--FKAIALTVDT--PRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKD-VKWLQT 196 (344)
Q Consensus 122 ag--~~~l~~tvd~--~~~g~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~i~~ 196 (344)
.. -+.+.+++-. |.......++.... ...|.. +. + .....+. ...+. ++.+++
T Consensus 633 ~~~~~~p~gvN~~~~~p~~~~~~~~~~~~~-~~~gv~-----------i~-----g---v~~~~G~--p~~e~~~~~l~~ 690 (2060)
T 2uva_G 633 AIPPGRGITVNLIYVNPRAMGWQIPLLGRL-RADGVP-----------IE-----G---LTIGAGV--PSIEVANEYIQT 690 (2060)
T ss_dssp GSCTTCCEEEEEETTCTTHHHHHHHHHHHH-HTTTCC-----------EE-----E---EEEESSC--CCHHHHHHHHHH
T ss_pred hcccCCCeEecccccCcccchhHHHHHHHH-HHcCCC-----------cc-----e---EeecCCC--CCHHHHHHHHHH
Confidence 53 1233333322 11000000000000 000000 00 0 0000111 13333 444444
Q ss_pred hcCCcEEEEeecCHHHHHHH----HHcCCcEEE---Ecc--CCCC-C-CCCchhhHHHHHHHHHHccCCCcEEEecCCCC
Q 019244 197 ITKLPILVKGVLTAEDARIA----VQAGAAGII---VSN--HGAR-Q-LDYVPATIMALEEVVKATQGRIPVFLDGGVRR 265 (344)
Q Consensus 197 ~~~~PvivK~v~~~~~a~~~----~~~G~d~I~---v~~--~gG~-~-~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~ 265 (344)
.+++++ +.+.+..+++.+ .++|+|+|+ +.| .||+ . .+...+++..+++|++.+ ++|||++|||.+
T Consensus 691 -~gi~~i-~~v~~~~~a~~~v~~l~~aG~D~iV~~q~~G~eaGGH~g~~d~~~~~l~lv~~i~~~~--~ipviaaGGI~~ 766 (2060)
T 2uva_G 691 -LGIRHI-SFKPGSVDAIQQVINIAKANPTFPIILQWTGGRGGGHHSFEDFHQPILLMYSRIRKCS--NIVLVAGSGFGG 766 (2060)
T ss_dssp -SCCSEE-EECCCSHHHHHHHHHHHHHCTTSCEEEEECCTTSSSSCCSCCSHHHHHHHHHHHHTST--TEEEEEESSCCS
T ss_pred -cCCeEE-EecCCHHHHHHHHHHHHHcCCCEEEEeeeEcccCCCCCCcccccchHHHHHHHHHHHc--CCCEEEeCCCCC
Confidence 588887 556666776666 999999999 654 2333 2 234467788899998766 799999999999
Q ss_pred HHHHHHHH-----------HcCCCEEEEchHHHHHhhh
Q 019244 266 GTDVFKAL-----------ALGASGIFIGRPVVYSLAA 292 (344)
Q Consensus 266 g~dv~kal-----------alGAd~V~ig~~~l~~~~~ 292 (344)
+.|++++| +||||+|+||+.|+....+
T Consensus 767 g~~i~aaltg~ws~~~g~palGAdgV~~GT~f~~t~Ea 804 (2060)
T 2uva_G 767 SEDTYPYLTGSWSTKFGYPPMPFDGCMFGSRMMTAKEA 804 (2060)
T ss_dssp HHHHHHHHHTCGGGTTTSCCCCCSCEEESGGGGGBTTS
T ss_pred HHHHHHHhcCcchhhcCCCCCCCCEEEEchhhhcCcCC
Confidence 99999999 9999999999999865433
|
| >1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=99.06 E-value=2.2e-09 Score=96.04 Aligned_cols=97 Identities=20% Similarity=0.256 Sum_probs=79.5
Q ss_pred HHHHHHHHHhc-CCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCC--CCC--chhhHHHHHHHHHHccCCCcEEEecC
Q 019244 188 WKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ--LDY--VPATIMALEEVVKATQGRIPVFLDGG 262 (344)
Q Consensus 188 ~~~i~~i~~~~-~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~--~~~--g~~~~~~l~~i~~~~~~~~~via~GG 262 (344)
.+.++++++.+ +.++++ .+.++++++.+.++|+|+|.++++|.+. .+. ..+.++.+.++++.+ ++||+++||
T Consensus 107 ~~~i~~~~~~~~~~~v~~-~~~t~~e~~~~~~~G~d~i~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~--~ipvia~GG 183 (223)
T 1y0e_A 107 DELVSYIRTHAPNVEIMA-DIATVEEAKNAARLGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSV--DAKVIAEGN 183 (223)
T ss_dssp HHHHHHHHHHCTTSEEEE-ECSSHHHHHHHHHTTCSEEECTTTTSSTTSTTCCTTHHHHHHHHHHHHHC--CSEEEEESS
T ss_pred HHHHHHHHHhCCCceEEe-cCCCHHHHHHHHHcCCCEEEeCCCcCcCCCCCCCCCcccHHHHHHHHhhC--CCCEEEecC
Confidence 45689999987 566654 5688999999999999999887765432 122 355677888888776 799999999
Q ss_pred CCCHHHHHHHHHcCCCEEEEchHHH
Q 019244 263 VRRGTDVFKALALGASGIFIGRPVV 287 (344)
Q Consensus 263 Ir~g~dv~kalalGAd~V~ig~~~l 287 (344)
|++++|+.+++++|||+|++|++++
T Consensus 184 I~~~~~~~~~~~~Gad~v~vG~al~ 208 (223)
T 1y0e_A 184 VITPDMYKRVMDLGVHCSVVGGAIT 208 (223)
T ss_dssp CCSHHHHHHHHHTTCSEEEECHHHH
T ss_pred CCCHHHHHHHHHcCCCEEEEChHHc
Confidence 9999999999999999999999975
|
| >1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=99.03 E-value=1.7e-09 Score=97.55 Aligned_cols=94 Identities=24% Similarity=0.274 Sum_probs=75.0
Q ss_pred cHHHHHHHHHhcCCcEEEEee-----cCHHH----HHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcE
Q 019244 187 SWKDVKWLQTITKLPILVKGV-----LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 257 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v-----~~~~~----a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~v 257 (344)
..+.++++++.++ |+++|.+ ++.++ ++.+.++|+|+|.++. |. ..|..+++.+..+++.+++++||
T Consensus 104 ~~~~i~~v~~a~~-pv~vKvi~e~~~l~~~~~~~~a~~a~eaGad~I~tst-g~---~~gga~~~~i~~v~~~v~~~ipV 178 (225)
T 1mzh_A 104 VVEELKEIFRETP-SAVHKVIVETPYLNEEEIKKAVEICIEAGADFIKTST-GF---APRGTTLEEVRLIKSSAKGRIKV 178 (225)
T ss_dssp HHHHHHHHHHTCT-TSEEEEECCGGGCCHHHHHHHHHHHHHHTCSEEECCC-SC---SSSCCCHHHHHHHHHHHTTSSEE
T ss_pred HHHHHHHHHHHhc-CceEEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEECC-CC---CCCCCCHHHHHHHHHHhCCCCcE
Confidence 3456889999888 9999994 45443 6788999999996654 21 12335778888888877668999
Q ss_pred EEecCCCCHHHHHHHHHcCCCEEEEchH
Q 019244 258 FLDGGVRRGTDVFKALALGASGIFIGRP 285 (344)
Q Consensus 258 ia~GGIr~g~dv~kalalGAd~V~ig~~ 285 (344)
+++|||+|+.|+.+++.+||+.|++++.
T Consensus 179 ia~GGI~t~~da~~~l~aGA~~iG~s~~ 206 (225)
T 1mzh_A 179 KASGGIRDLETAISMIEAGADRIGTSSG 206 (225)
T ss_dssp EEESSCCSHHHHHHHHHTTCSEEEESCH
T ss_pred EEECCCCCHHHHHHHHHhCchHHHHccH
Confidence 9999999999999999999999888865
|
| >3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=2.2e-08 Score=95.70 Aligned_cols=101 Identities=18% Similarity=0.195 Sum_probs=80.4
Q ss_pred CcHHHHHHHHHhcCCcEEEEeecC------------HHHHHHHHHcCCcEEEEccCCCCC--CCCch-hhHHHHHHHHHH
Q 019244 186 LSWKDVKWLQTITKLPILVKGVLT------------AEDARIAVQAGAAGIIVSNHGARQ--LDYVP-ATIMALEEVVKA 250 (344)
Q Consensus 186 ~~~~~i~~i~~~~~~PvivK~v~~------------~~~a~~~~~~G~d~I~v~~~gG~~--~~~g~-~~~~~l~~i~~~ 250 (344)
|..+.++.+|+.++.||.+|.... .+.++.+.++|+|+|.|++.+-.. ...++ ..++.+.++++.
T Consensus 196 ~~~eiv~avr~~v~~pv~vRls~~~~~~~g~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~ 275 (340)
T 3gr7_A 196 FLGEVIDAVREVWDGPLFVRISASDYHPDGLTAKDYVPYAKRMKEQGVDLVDVSSGAIVPARMNVYPGYQVPFAELIRRE 275 (340)
T ss_dssp HHHHHHHHHHHHCCSCEEEEEESCCCSTTSCCGGGHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCceEEEeccccccCCCCCHHHHHHHHHHHHHcCCCEEEEecCCccCCCCCCCccccHHHHHHHHHH
Confidence 456789999999999999999732 345788999999999998532111 11122 246677788877
Q ss_pred ccCCCcEEEecCCCCHHHHHHHHHcC-CCEEEEchHHHH
Q 019244 251 TQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 288 (344)
Q Consensus 251 ~~~~~~via~GGIr~g~dv~kalalG-Ad~V~ig~~~l~ 288 (344)
+ ++|||+.|||++.+++.++|..| ||+|++||+++.
T Consensus 276 ~--~iPVi~~GgI~s~e~a~~~L~~G~aD~V~iGR~~la 312 (340)
T 3gr7_A 276 A--DIPTGAVGLITSGWQAEEILQNGRADLVFLGRELLR 312 (340)
T ss_dssp T--TCCEEEESSCCCHHHHHHHHHTTSCSEEEECHHHHH
T ss_pred c--CCcEEeeCCCCCHHHHHHHHHCCCeeEEEecHHHHh
Confidence 7 79999999999999999999999 999999999985
|
| >1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=1.8e-08 Score=96.11 Aligned_cols=101 Identities=18% Similarity=0.179 Sum_probs=79.9
Q ss_pred CcHHHHHHHHHhcCCcEEEEeec--------CH----HHHHHHHHcCCcEEEEccCCCC-C-CCCch-hhHHHHHHHHHH
Q 019244 186 LSWKDVKWLQTITKLPILVKGVL--------TA----EDARIAVQAGAAGIIVSNHGAR-Q-LDYVP-ATIMALEEVVKA 250 (344)
Q Consensus 186 ~~~~~i~~i~~~~~~PvivK~v~--------~~----~~a~~~~~~G~d~I~v~~~gG~-~-~~~g~-~~~~~l~~i~~~ 250 (344)
+..+.++.+|+.++.||.+|... +. +.++.+.++|+|+|.+++.... + ...++ ..++.+.++++.
T Consensus 196 ~~~eiv~avr~~v~~pv~vris~~~~~~~g~~~~~~~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~~~~ir~~ 275 (338)
T 1z41_A 196 FLREIIDEVKQVWDGPLFVRVSASDYTDKGLDIADHIGFAKWMKEQGVDLIDCSSGALVHADINVFPGYQVSFAEKIREQ 275 (338)
T ss_dssp HHHHHHHHHHHHCCSCEEEEEECCCCSTTSCCHHHHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcEEEEecCcccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCccccCCCCCCccchHHHHHHHHHH
Confidence 45678999999999999999853 33 3467889999999999763211 1 11222 245677788877
Q ss_pred ccCCCcEEEecCCCCHHHHHHHHHcC-CCEEEEchHHHH
Q 019244 251 TQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 288 (344)
Q Consensus 251 ~~~~~~via~GGIr~g~dv~kalalG-Ad~V~ig~~~l~ 288 (344)
+ ++||++.|||+++.++.++|+.| ||+|++||+++.
T Consensus 276 ~--~iPVi~~Ggi~s~~~a~~~l~~G~aD~V~iGR~~i~ 312 (338)
T 1z41_A 276 A--DMATGAVGMITDGSMAEEILQNGRADLIFIGRELLR 312 (338)
T ss_dssp H--CCEEEECSSCCSHHHHHHHHHTTSCSEEEECHHHHH
T ss_pred C--CCCEEEECCCCCHHHHHHHHHcCCceEEeecHHHHh
Confidence 7 79999999999999999999999 999999999985
|
| >3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=98.97 E-value=1e-08 Score=92.77 Aligned_cols=97 Identities=13% Similarity=0.101 Sum_probs=76.6
Q ss_pred cHHHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCC-CCchhhHHHHHHHHHHccCCCcEEEecCCCC
Q 019244 187 SWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQL-DYVPATIMALEEVVKATQGRIPVFLDGGVRR 265 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~-~~g~~~~~~l~~i~~~~~~~~~via~GGIr~ 265 (344)
..+.++.+++. ++++++ .+.+.++++++.++|+|.|.+.++|.+.. ....++++.++++++. ++|||++|||.+
T Consensus 118 l~~~i~~~~~~-g~~v~~-~v~t~eea~~a~~~Gad~Ig~~~~g~t~~~~~~~~~~~~i~~l~~~---~ipvIA~GGI~t 192 (232)
T 3igs_A 118 VEALLARIHHH-HLLTMA-DCSSVDDGLACQRLGADIIGTTMSGYTTPDTPEEPDLPLVKALHDA---GCRVIAEGRYNS 192 (232)
T ss_dssp HHHHHHHHHHT-TCEEEE-ECCSHHHHHHHHHTTCSEEECTTTTSSSSSCCSSCCHHHHHHHHHT---TCCEEEESCCCS
T ss_pred HHHHHHHHHHC-CCEEEE-eCCCHHHHHHHHhCCCCEEEEcCccCCCCCCCCCCCHHHHHHHHhc---CCcEEEECCCCC
Confidence 34557777664 777766 46899999999999999997765543211 1234577888888764 799999999999
Q ss_pred HHHHHHHHHcCCCEEEEchHHHH
Q 019244 266 GTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 266 g~dv~kalalGAd~V~ig~~~l~ 288 (344)
++|+.+++++||++|++|+.++.
T Consensus 193 ~~d~~~~~~~GadgV~VGsal~~ 215 (232)
T 3igs_A 193 PALAAEAIRYGAWAVTVGSAITR 215 (232)
T ss_dssp HHHHHHHHHTTCSEEEECHHHHC
T ss_pred HHHHHHHHHcCCCEEEEehHhcC
Confidence 99999999999999999999874
|
| >3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.1e-08 Score=92.34 Aligned_cols=97 Identities=14% Similarity=0.088 Sum_probs=76.6
Q ss_pred cHHHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCC-CCchhhHHHHHHHHHHccCCCcEEEecCCCC
Q 019244 187 SWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQL-DYVPATIMALEEVVKATQGRIPVFLDGGVRR 265 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~-~~g~~~~~~l~~i~~~~~~~~~via~GGIr~ 265 (344)
..+.++.+++. ++++++ .+.+.++++++.++|+|.|.+.++|.+.. ....++++.++++++. ++|||+.|||.|
T Consensus 118 l~~~i~~~~~~-g~~v~~-~v~t~eea~~a~~~Gad~Ig~~~~g~t~~~~~~~~~~~li~~l~~~---~ipvIA~GGI~t 192 (229)
T 3q58_A 118 IDSLLTRIRLH-GLLAMA-DCSTVNEGISCHQKGIEFIGTTLSGYTGPITPVEPDLAMVTQLSHA---GCRVIAEGRYNT 192 (229)
T ss_dssp HHHHHHHHHHT-TCEEEE-ECSSHHHHHHHHHTTCSEEECTTTTSSSSCCCSSCCHHHHHHHHTT---TCCEEEESSCCS
T ss_pred HHHHHHHHHHC-CCEEEE-ecCCHHHHHHHHhCCCCEEEecCccCCCCCcCCCCCHHHHHHHHHc---CCCEEEECCCCC
Confidence 34567777764 777776 46899999999999999997765553211 1234577888887653 799999999999
Q ss_pred HHHHHHHHHcCCCEEEEchHHHH
Q 019244 266 GTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 266 g~dv~kalalGAd~V~ig~~~l~ 288 (344)
++|+.+++++||++|++|+.++.
T Consensus 193 ~~d~~~~~~~GadgV~VGsai~~ 215 (229)
T 3q58_A 193 PALAANAIEHGAWAVTVGSAITR 215 (229)
T ss_dssp HHHHHHHHHTTCSEEEECHHHHC
T ss_pred HHHHHHHHHcCCCEEEEchHhcC
Confidence 99999999999999999999874
|
| >3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics, structural genomics center for infectious disease, ssgcid; 1.70A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=98.91 E-value=4.6e-09 Score=94.98 Aligned_cols=95 Identities=27% Similarity=0.185 Sum_probs=70.4
Q ss_pred cHHHHHHHHHhcCCcEEEEee-----cCHHHHHH----HHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcE
Q 019244 187 SWKDVKWLQTITKLPILVKGV-----LTAEDARI----AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 257 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v-----~~~~~a~~----~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~v 257 (344)
..++|+.+++..+- .++|.+ ++.++..+ +.++|+|+|+.|+.-+ .+..+++.+..+++.++++++|
T Consensus 129 v~~eI~~v~~a~~~-~~lKVIlEt~~Lt~eei~~a~~ia~~aGADfVKTSTGf~----~ggAt~~dv~lmr~~vg~~v~V 203 (239)
T 3ngj_A 129 VEKDVKAVVDASGK-ALTKVIIECCYLTNEEKVEVCKRCVAAGAEYVKTSTGFG----THGATPEDVKLMKDTVGDKALV 203 (239)
T ss_dssp HHHHHHHHHHHHTT-SEEEEECCGGGSCHHHHHHHHHHHHHHTCSEEECCCSSS----SCCCCHHHHHHHHHHHGGGSEE
T ss_pred HHHHHHHHHHHhcC-CceEEEEecCCCCHHHHHHHHHHHHHHCcCEEECCCCCC----CCCCCHHHHHHHHHhhCCCceE
Confidence 44578888888752 356665 56666444 5899999999984211 1234566666666666778999
Q ss_pred EEecCCCCHHHHHHHHHcCCCEEEEchHH
Q 019244 258 FLDGGVRRGTDVFKALALGASGIFIGRPV 286 (344)
Q Consensus 258 ia~GGIr~g~dv~kalalGAd~V~ig~~~ 286 (344)
.++||||+..|+++.+.+||+.++..+..
T Consensus 204 KasGGIrt~~da~~~i~aGA~riGtS~~~ 232 (239)
T 3ngj_A 204 KAAGGIRTFDDAMKMINNGASRIGASAGI 232 (239)
T ss_dssp EEESSCCSHHHHHHHHHTTEEEEEESCHH
T ss_pred EEeCCCCCHHHHHHHHHhcccceecccHH
Confidence 99999999999999999999998877643
|
| >3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=6.8e-08 Score=92.53 Aligned_cols=101 Identities=19% Similarity=0.228 Sum_probs=79.5
Q ss_pred CcHHHHHHHHHhc--CCcEEEEeec--------CHHH----HHHHHHcCCcEEEEccCCCCC---CCCch-hhHHHHHHH
Q 019244 186 LSWKDVKWLQTIT--KLPILVKGVL--------TAED----ARIAVQAGAAGIIVSNHGARQ---LDYVP-ATIMALEEV 247 (344)
Q Consensus 186 ~~~~~i~~i~~~~--~~PvivK~v~--------~~~~----a~~~~~~G~d~I~v~~~gG~~---~~~g~-~~~~~l~~i 247 (344)
|..+.++.+|+.+ +.||.+|... +.++ ++.+.++|+|+|.+++.+-.. ...++ ..++.+.++
T Consensus 204 ~~~eiv~aVR~avG~d~pV~vRls~~~~~~~g~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~~i 283 (349)
T 3hgj_A 204 FPLQVAQAVREVVPRELPLFVRVSATDWGEGGWSLEDTLAFARRLKELGVDLLDCSSGGVVLRVRIPLAPGFQVPFADAV 283 (349)
T ss_dssp HHHHHHHHHHHHSCTTSCEEEEEESCCCSTTSCCHHHHHHHHHHHHHTTCCEEEEECCCSCSSSCCCCCTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCceEEEEeccccccCCCCCHHHHHHHHHHHHHcCCCEEEEecCCcCcccccCCCccccHHHHHHH
Confidence 4567899999999 6899999873 4444 778889999999998522111 11122 245677778
Q ss_pred HHHccCCCcEEEecCCCCHHHHHHHHHcC-CCEEEEchHHHH
Q 019244 248 VKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 288 (344)
Q Consensus 248 ~~~~~~~~~via~GGIr~g~dv~kalalG-Ad~V~ig~~~l~ 288 (344)
++.+ ++||++.|||+++.++.++|+.| ||+|++||+++.
T Consensus 284 r~~~--~iPVi~~Ggi~t~e~a~~~l~~G~aD~V~iGR~~la 323 (349)
T 3hgj_A 284 RKRV--GLRTGAVGLITTPEQAETLLQAGSADLVLLGRVLLR 323 (349)
T ss_dssp HHHH--CCEEEECSSCCCHHHHHHHHHTTSCSEEEESTHHHH
T ss_pred HHHc--CceEEEECCCCCHHHHHHHHHCCCceEEEecHHHHh
Confidence 7776 79999999999999999999999 999999999985
|
| >3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=98.87 E-value=1.8e-08 Score=93.24 Aligned_cols=97 Identities=21% Similarity=0.224 Sum_probs=70.6
Q ss_pred cHHHHHHHHHhcCCcEEEEee-----cCHHH----HHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcE
Q 019244 187 SWKDVKWLQTITKLPILVKGV-----LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 257 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v-----~~~~~----a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~v 257 (344)
..++|+.+++..+-| ++|.+ ++.++ ++.+.++|+|+|..|..-+. ....+..+..++++.+..+.+++|
T Consensus 160 v~~eI~~V~~a~~~~-~lKVIlEt~~Lt~eei~~A~~ia~eaGADfVKTSTGf~~-~GAT~edv~lmr~~v~~~g~~v~V 237 (288)
T 3oa3_A 160 VFQDIRAVRLAAKDA-ILKVILETSQLTADEIIAGCVLSSLAGADYVKTSTGFNG-PGASIENVSLMSAVCDSLQSETRV 237 (288)
T ss_dssp HHHHHHHHHHHTTTS-EEEEECCGGGCCHHHHHHHHHHHHHTTCSEEECCCSSSS-CCCCHHHHHHHHHHHHHSSSCCEE
T ss_pred HHHHHHHHHHHhcCC-CceEEEECCCCCHHHHHHHHHHHHHcCCCEEEcCCCCCC-CCCCHHHHHHHHHHHHHhCCCceE
Confidence 446788899887666 47876 46666 57788999999999842111 011234455555555443568999
Q ss_pred EEecCCCCHHHHHHHHHcCCCEEEEchH
Q 019244 258 FLDGGVRRGTDVFKALALGASGIFIGRP 285 (344)
Q Consensus 258 ia~GGIr~g~dv~kalalGAd~V~ig~~ 285 (344)
.++||||+.+|+.+++.+||+.++..+.
T Consensus 238 KAAGGIrt~edAl~mi~aGA~RiGtS~g 265 (288)
T 3oa3_A 238 KASGGIRTIEDCVKMVRAGAERLGASAG 265 (288)
T ss_dssp EEESSCCSHHHHHHHHHTTCSEEEESCH
T ss_pred EEeCCCCCHHHHHHHHHcCCceeehhhH
Confidence 9999999999999999999998877664
|
| >3r12_A Deoxyribose-phosphate aldolase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG; HET: MSE CIT; 1.75A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1o0y_A* 3r13_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=3.4e-08 Score=90.21 Aligned_cols=93 Identities=24% Similarity=0.192 Sum_probs=70.1
Q ss_pred HHHHHHHHHhcCCcEEEEee-----cCHHH----HHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEE
Q 019244 188 WKDVKWLQTITKLPILVKGV-----LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 258 (344)
Q Consensus 188 ~~~i~~i~~~~~~PvivK~v-----~~~~~----a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~vi 258 (344)
.++|..+++..+ ...+|.+ ++.++ ++.+.++|+|+|..|+.-+ .+..+++.+..+++.++++++|.
T Consensus 146 ~~eI~~v~~a~~-~~~lKVIlEt~~Lt~eei~~A~~ia~eaGADfVKTSTGf~----~~GAT~edV~lm~~~vg~~v~VK 220 (260)
T 3r12_A 146 YEDIRSVVESVK-GKVVKVIIETCYLDTEEKIAACVISKLAGAHFVKTSTGFG----TGGATAEDVHLMKWIVGDEMGVK 220 (260)
T ss_dssp HHHHHHHHHHTT-TSEEEEECCGGGCCHHHHHHHHHHHHHTTCSEEECCCSSS----SCCCCHHHHHHHHHHHCTTSEEE
T ss_pred HHHHHHHHHhcC-CCcEEEEEeCCCCCHHHHHHHHHHHHHhCcCEEEcCCCCC----CCCCCHHHHHHHHHHhCCCceEE
Confidence 457888888774 3456876 45554 4567899999999985211 22356666666666777799999
Q ss_pred EecCCCCHHHHHHHHHcCCCEEEEchH
Q 019244 259 LDGGVRRGTDVFKALALGASGIFIGRP 285 (344)
Q Consensus 259 a~GGIr~g~dv~kalalGAd~V~ig~~ 285 (344)
++||||+..|+.+.+.+||+-++..+.
T Consensus 221 aAGGIrt~~~al~mi~aGA~RiGtS~g 247 (260)
T 3r12_A 221 ASGGIRTFEDAVKMIMYGADRIGTSSG 247 (260)
T ss_dssp EESSCCSHHHHHHHHHTTCSEEEESCH
T ss_pred EeCCCCCHHHHHHHHHcCCceeecchH
Confidence 999999999999999999998877654
|
| >3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=1.8e-07 Score=90.07 Aligned_cols=101 Identities=19% Similarity=0.137 Sum_probs=78.6
Q ss_pred CcHHHHHHHHHhc--CCcEEEEeec---------CHHH----HHHHHHcCCcEEEEccCCCC---CCCCch-hhHHHHHH
Q 019244 186 LSWKDVKWLQTIT--KLPILVKGVL---------TAED----ARIAVQAGAAGIIVSNHGAR---QLDYVP-ATIMALEE 246 (344)
Q Consensus 186 ~~~~~i~~i~~~~--~~PvivK~v~---------~~~~----a~~~~~~G~d~I~v~~~gG~---~~~~g~-~~~~~l~~ 246 (344)
|..+.++.+|+.+ +.||.+|... +.++ ++.+.++|+|+|.+++.+-. ....++ ...+.+..
T Consensus 210 ~~~eiv~aVr~avg~d~pV~vRis~~~~~~~G~~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~~ 289 (363)
T 3l5l_A 210 FLLETLAAVREVWPENLPLTARFGVLEYDGRDEQTLEESIELARRFKAGGLDLLSVSVGFTIPDTNIPWGPAFMGPIAER 289 (363)
T ss_dssp HHHHHHHHHHTTSCTTSCEEEEEEEECSSSCHHHHHHHHHHHHHHHHHTTCCEEEEEECCCSSCCCCCCCTTTTHHHHHH
T ss_pred HHHHHHHHHHHHcCCCceEEEEecchhcCCCCCCCHHHHHHHHHHHHHcCCCEEEEecCccccccccCCCcchhHHHHHH
Confidence 4567899999998 5899999862 2333 77889999999999863211 111122 24566777
Q ss_pred HHHHccCCCcEEEecCCCCHHHHHHHHHcC-CCEEEEchHHHH
Q 019244 247 VVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 288 (344)
Q Consensus 247 i~~~~~~~~~via~GGIr~g~dv~kalalG-Ad~V~ig~~~l~ 288 (344)
+++.+ ++||++.|||++..++.++|..| ||+|++||+++.
T Consensus 290 ir~~~--~iPVi~~GgI~s~e~a~~~l~~G~aD~V~iGR~~la 330 (363)
T 3l5l_A 290 VRREA--KLPVTSAWGFGTPQLAEAALQANQLDLVSVGRAHLA 330 (363)
T ss_dssp HHHHH--TCCEEECSSTTSHHHHHHHHHTTSCSEEECCHHHHH
T ss_pred HHHHc--CCcEEEeCCCCCHHHHHHHHHCCCccEEEecHHHHh
Confidence 77777 79999999999999999999999 999999999985
|
| >1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=98.73 E-value=7.1e-08 Score=86.88 Aligned_cols=97 Identities=19% Similarity=0.246 Sum_probs=75.2
Q ss_pred cHHHHHHHHHhc-CCcEEEEeecCHHHHHHHHHcCCcEE--EEccC-CCCCCCCchhhHHHHHHHHHHccCCCcEEEecC
Q 019244 187 SWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGI--IVSNH-GARQLDYVPATIMALEEVVKATQGRIPVFLDGG 262 (344)
Q Consensus 187 ~~~~i~~i~~~~-~~PvivK~v~~~~~a~~~~~~G~d~I--~v~~~-gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GG 262 (344)
..+.++.+++.+ +.++++ .+.++++++.+.++|+|+| .+.+. .+.+ ....+.++.+.++++. ++||+++||
T Consensus 120 ~~~~i~~i~~~~~~~~v~~-~~~t~~ea~~a~~~Gad~i~~~v~g~~~~~~-~~~~~~~~~i~~~~~~---~ipvia~GG 194 (234)
T 1yxy_A 120 IASFIRQVKEKYPNQLLMA-DISTFDEGLVAHQAGIDFVGTTLSGYTPYSR-QEAGPDVALIEALCKA---GIAVIAEGK 194 (234)
T ss_dssp HHHHHHHHHHHCTTCEEEE-ECSSHHHHHHHHHTTCSEEECTTTTSSTTSC-CSSSCCHHHHHHHHHT---TCCEEEESC
T ss_pred HHHHHHHHHHhCCCCeEEE-eCCCHHHHHHHHHcCCCEEeeeccccCCCCc-CCCCCCHHHHHHHHhC---CCCEEEECC
Confidence 356799999887 566655 4678999999999999999 55442 1221 1123456777777653 699999999
Q ss_pred CCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 263 VRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 263 Ir~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
|+|.+|+.+++++|||+|++|++++.
T Consensus 195 I~s~~~~~~~~~~Gad~v~vGsal~~ 220 (234)
T 1yxy_A 195 IHSPEEAKKINDLGVAGIVVGGAITR 220 (234)
T ss_dssp CCSHHHHHHHHTTCCSEEEECHHHHC
T ss_pred CCCHHHHHHHHHCCCCEEEEchHHhC
Confidence 99999999999999999999998763
|
| >3ndo_A Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; HET: GOL; 1.25A {Mycobacterium smegmatis} PDB: 3ng3_A | Back alignment and structure |
|---|
Probab=98.72 E-value=9.3e-08 Score=86.07 Aligned_cols=95 Identities=21% Similarity=0.217 Sum_probs=71.2
Q ss_pred cHHHHHHHHHhcCCcEEEEee-----c----CHHH----HHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccC
Q 019244 187 SWKDVKWLQTITKLPILVKGV-----L----TAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQG 253 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v-----~----~~~~----a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~ 253 (344)
..++|..+++..+ ...+|.+ + +.++ ++.+.++|+|+|..|..-+ ..+..+++.+..+++.+++
T Consensus 114 v~~ei~~v~~a~~-~~~lKvIiEt~~L~~~~t~eei~~a~~ia~~aGADfVKTSTGf~---~~~gAt~edv~lm~~~v~~ 189 (231)
T 3ndo_A 114 VSADITAVRKAVR-AATLKVIVESAALLEFSGEPLLADVCRVARDAGADFVKTSTGFH---PSGGASVQAVEIMARTVGE 189 (231)
T ss_dssp HHHHHHHHHHHTT-TSEEEEECCHHHHHHHTCHHHHHHHHHHHHHTTCSEEECCCSCC---TTCSCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcc-CCceEEEEECcccCCCCCHHHHHHHHHHHHHHCcCEEEcCCCCC---CCCCCCHHHHHHHHHHhCC
Confidence 3457888888875 3456876 5 6555 3567799999999985211 0123566777777777777
Q ss_pred CCcEEEecCCCCHHHHHHHHHcCCCEEEEchH
Q 019244 254 RIPVFLDGGVRRGTDVFKALALGASGIFIGRP 285 (344)
Q Consensus 254 ~~~via~GGIr~g~dv~kalalGAd~V~ig~~ 285 (344)
+++|.++||||+.+|+.+.+.+||+-++..+.
T Consensus 190 ~v~VKaaGGIrt~~~a~~~i~aGa~RiGtS~g 221 (231)
T 3ndo_A 190 RLGVKASGGIRTAEQAAAMLDAGATRLGLSGS 221 (231)
T ss_dssp TSEEEEESSCCSHHHHHHHHHTTCSEEEESSH
T ss_pred CceEEEeCCCCCHHHHHHHHHhcchhcccchH
Confidence 99999999999999999999999998776653
|
| >1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A | Back alignment and structure |
|---|
Probab=98.72 E-value=1.6e-07 Score=85.14 Aligned_cols=119 Identities=22% Similarity=0.265 Sum_probs=81.0
Q ss_pred HHHHHHHHHhcCCcEEEEeecC-------HHHHHHHHHcCCcEEEEccC---------------CC---------CC---
Q 019244 188 WKDVKWLQTITKLPILVKGVLT-------AEDARIAVQAGAAGIIVSNH---------------GA---------RQ--- 233 (344)
Q Consensus 188 ~~~i~~i~~~~~~PvivK~v~~-------~~~a~~~~~~G~d~I~v~~~---------------gG---------~~--- 233 (344)
.+.++++++.+++||.+....+ .+.++.+.++|+|+|++..- |- +.
T Consensus 69 ~~~i~~i~~~~~~pv~~~~~~~~~~~~~~~~~~~~~~~~Gad~v~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~t~~e~ 148 (248)
T 1geq_A 69 FWIVKEFRRHSSTPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVFHAKEFTEIAREEGIKTVFLAAPNTPDER 148 (248)
T ss_dssp HHHHHHHHTTCCCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTCCGGGHHHHHHHHHHHTCEEEEEECTTCCHHH
T ss_pred HHHHHHHHhhCCCCEEEEeccchhhhcCHHHHHHHHHHCCCCEEEECCCChhhHHHHHHHHHHhCCCeEEEECCCCHHHH
Confidence 5678888887778877765433 36677888888888887531 10 00
Q ss_pred -------CC-----------Cc------hhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHH
Q 019244 234 -------LD-----------YV------PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 289 (344)
Q Consensus 234 -------~~-----------~g------~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~ 289 (344)
.+ .| +...+.+.++++.. ++||+++|||++++|+.+++.+|||.|.+|+.++..
T Consensus 149 ~~~~~~~~d~~i~~~~~~G~~g~~~~~~~~~~~~i~~l~~~~--~~pi~~~GGI~~~e~i~~~~~~Gad~vivGsai~~~ 226 (248)
T 1geq_A 149 LKVIDDMTTGFVYLVSLYGTTGAREEIPKTAYDLLRRAKRIC--RNKVAVGFGVSKREHVVSLLKEGANGVVVGSALVKI 226 (248)
T ss_dssp HHHHHHHCSSEEEEECCC-------CCCHHHHHHHHHHHHHC--SSCEEEESCCCSHHHHHHHHHTTCSEEEECHHHHHH
T ss_pred HHHHHhcCCCeEEEEECCccCCCCCCCChhHHHHHHHHHhhc--CCCEEEEeecCCHHHHHHHHHcCCCEEEEcHHHHhh
Confidence 01 01 22355677777665 699999999999999999999999999999999876
Q ss_pred hhhcChHHHHHHHHHHHHHH
Q 019244 290 LAAEGEKGVRRVLEMLREEF 309 (344)
Q Consensus 290 ~~~~G~~~v~~~l~~l~~el 309 (344)
...+. +.+.++++.+++.|
T Consensus 227 ~~~~~-~~~~~~~~~~~~~~ 245 (248)
T 1geq_A 227 IGEKG-REATEFLKKKVEEL 245 (248)
T ss_dssp HHHHG-GGCHHHHHHHHHHH
T ss_pred HhhCh-HHHHHHHHHHHHHh
Confidence 42112 44555555555444
|
| >1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A | Back alignment and structure |
|---|
Probab=98.71 E-value=6.6e-07 Score=78.77 Aligned_cols=92 Identities=14% Similarity=0.134 Sum_probs=70.7
Q ss_pred CcHHHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCC
Q 019244 186 LSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 265 (344)
Q Consensus 186 ~~~~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~ 265 (344)
+.-+.++..++ .++|++. ++.|+++++.+.++|+|.|.+... ....++.+.++++.++ ++||+++|||.
T Consensus 92 ~~~~~~~~~~~-~g~~vi~-g~~t~~e~~~a~~~Gad~vk~~~~-------~~~g~~~~~~l~~~~~-~~pvia~GGI~- 160 (205)
T 1wa3_A 92 LDEEISQFCKE-KGVFYMP-GVMTPTELVKAMKLGHTILKLFPG-------EVVGPQFVKAMKGPFP-NVKFVPTGGVN- 160 (205)
T ss_dssp CCHHHHHHHHH-HTCEEEC-EECSHHHHHHHHHTTCCEEEETTH-------HHHHHHHHHHHHTTCT-TCEEEEBSSCC-
T ss_pred CCHHHHHHHHH-cCCcEEC-CcCCHHHHHHHHHcCCCEEEEcCc-------cccCHHHHHHHHHhCC-CCcEEEcCCCC-
Confidence 34445555554 6999987 678899999999999999988431 0123455666655443 79999999996
Q ss_pred HHHHHHHHHcCCCEEEEchHHHH
Q 019244 266 GTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 266 g~dv~kalalGAd~V~ig~~~l~ 288 (344)
..++.+++.+||++|.+|+.++.
T Consensus 161 ~~~~~~~~~~Ga~~v~vGs~i~~ 183 (205)
T 1wa3_A 161 LDNVCEWFKAGVLAVGVGSALVK 183 (205)
T ss_dssp TTTHHHHHHHTCSCEEECHHHHC
T ss_pred HHHHHHHHHCCCCEEEECccccC
Confidence 78999999999999999999874
|
| >2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=3.6e-07 Score=88.01 Aligned_cols=98 Identities=15% Similarity=0.075 Sum_probs=76.2
Q ss_pred CCcHHHHHHHHHhcCC-cEEEEeec-----------CHHH----HHHHHHcCCcEEEEccCCCCCCCCch-hhHHHHHHH
Q 019244 185 SLSWKDVKWLQTITKL-PILVKGVL-----------TAED----ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEV 247 (344)
Q Consensus 185 ~~~~~~i~~i~~~~~~-PvivK~v~-----------~~~~----a~~~~~~G~d~I~v~~~gG~~~~~g~-~~~~~l~~i 247 (344)
.+..+.++.+|+.++- ||.+|... +.++ ++.+.++|+|+|.+++.. .+..+ ...+.+.++
T Consensus 212 r~~~eiv~avr~~vg~~pv~vris~~~~~~~~~~~~~~~~~~~~a~~l~~~G~d~i~v~~~~---~~~~~~~~~~~~~~i 288 (365)
T 2gou_A 212 RFLDEVVAALVDAIGAERVGVRLAPLTTLNGTVDADPILTYTAAAALLNKHRIVYLHIAEVD---WDDAPDTPVSFKRAL 288 (365)
T ss_dssp HHHHHHHHHHHHHHCGGGEEEEECSSCCTTSCCCSSHHHHHHHHHHHHHHTTCSEEEEECCB---TTBCCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcEEEEEccccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCC---cCCCCCccHHHHHHH
Confidence 3456789999998843 99999874 2233 788999999999998631 11111 124567778
Q ss_pred HHHccCCCcEEEecCCCCHHHHHHHHHcC-CCEEEEchHHHH
Q 019244 248 VKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 288 (344)
Q Consensus 248 ~~~~~~~~~via~GGIr~g~dv~kalalG-Ad~V~ig~~~l~ 288 (344)
++.+ ++|||+.||| +++++.++|+.| ||+|++||+++.
T Consensus 289 ~~~~--~iPvi~~Ggi-~~~~a~~~l~~g~aD~V~igR~~i~ 327 (365)
T 2gou_A 289 REAY--QGVLIYAGRY-NAEKAEQAINDGLADMIGFGRPFIA 327 (365)
T ss_dssp HHHC--CSEEEEESSC-CHHHHHHHHHTTSCSEEECCHHHHH
T ss_pred HHHC--CCcEEEeCCC-CHHHHHHHHHCCCcceehhcHHHHh
Confidence 7777 7999999999 999999999998 999999999985
|
| >1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1 | Back alignment and structure |
|---|
Probab=98.70 E-value=1.2e-07 Score=85.99 Aligned_cols=86 Identities=16% Similarity=0.259 Sum_probs=69.6
Q ss_pred CCcEEEEeecCHHHHHHHHHcCCcEEEEccC-CCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCC
Q 019244 199 KLPILVKGVLTAEDARIAVQAGAAGIIVSNH-GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGA 277 (344)
Q Consensus 199 ~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~-gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGA 277 (344)
+..++.-.+.++..++++.++|+++|..-+. -|+ ..|..+.+.|..+++.. ++|||++|||.+++|+.+++.+||
T Consensus 135 Gf~Vlpy~~dd~~~akrl~~~G~~aVmPlg~pIGs--G~Gi~~~~lI~~I~e~~--~vPVI~eGGI~TPsDAa~AmeLGA 210 (265)
T 1wv2_A 135 GFDVMVYTSDDPIIARQLAEIGCIAVMPLAGLIGS--GLGICNPYNLRIILEEA--KVPVLVDAGVGTASDAAIAMELGC 210 (265)
T ss_dssp TCEEEEEECSCHHHHHHHHHSCCSEEEECSSSTTC--CCCCSCHHHHHHHHHHC--SSCBEEESCCCSHHHHHHHHHHTC
T ss_pred CCEEEEEeCCCHHHHHHHHHhCCCEEEeCCccCCC--CCCcCCHHHHHHHHhcC--CCCEEEeCCCCCHHHHHHHHHcCC
Confidence 5555544567899999999999999977332 122 12455678888888754 799999999999999999999999
Q ss_pred CEEEEchHHHH
Q 019244 278 SGIFIGRPVVY 288 (344)
Q Consensus 278 d~V~ig~~~l~ 288 (344)
|+|++|+.+..
T Consensus 211 dgVlVgSAI~~ 221 (265)
T 1wv2_A 211 EAVLMNTAIAH 221 (265)
T ss_dssp SEEEESHHHHT
T ss_pred CEEEEChHHhC
Confidence 99999999874
|
| >3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=98.70 E-value=2.9e-07 Score=85.04 Aligned_cols=88 Identities=15% Similarity=0.209 Sum_probs=69.4
Q ss_pred cCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCC
Q 019244 198 TKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGA 277 (344)
Q Consensus 198 ~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGA 277 (344)
.++-+++ .+.+.++++++.++|+|.|-+.|...+.+ ...++...++.+.++.++++++.|||.|++|+.++..+||
T Consensus 168 lGl~~lv-evh~~eEl~~A~~~ga~iIGinnr~l~t~---~~dl~~~~~L~~~ip~~~~vIaesGI~t~edv~~l~~~Ga 243 (272)
T 3tsm_A 168 LGMDALI-EVHDEAEMERALKLSSRLLGVNNRNLRSF---EVNLAVSERLAKMAPSDRLLVGESGIFTHEDCLRLEKSGI 243 (272)
T ss_dssp TTCEEEE-EECSHHHHHHHTTSCCSEEEEECBCTTTC---CBCTHHHHHHHHHSCTTSEEEEESSCCSHHHHHHHHTTTC
T ss_pred cCCeEEE-EeCCHHHHHHHHhcCCCEEEECCCCCccC---CCChHHHHHHHHhCCCCCcEEEECCCCCHHHHHHHHHcCC
Confidence 4665554 46789999999999999998766543322 2334555566667766799999999999999999999999
Q ss_pred CEEEEchHHHHH
Q 019244 278 SGIFIGRPVVYS 289 (344)
Q Consensus 278 d~V~ig~~~l~~ 289 (344)
++|.||+.++.+
T Consensus 244 ~gvLVG~almr~ 255 (272)
T 3tsm_A 244 GTFLIGESLMRQ 255 (272)
T ss_dssp CEEEECHHHHTS
T ss_pred CEEEEcHHHcCC
Confidence 999999999864
|
| >3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=6.9e-07 Score=85.31 Aligned_cols=100 Identities=16% Similarity=0.097 Sum_probs=77.4
Q ss_pred CCcHHHHHHHHHhc--CCcEEEEeec--------CHHH----HHHHHHcCCcEEEEccCCCCCC---CCch-hhHHHHHH
Q 019244 185 SLSWKDVKWLQTIT--KLPILVKGVL--------TAED----ARIAVQAGAAGIIVSNHGARQL---DYVP-ATIMALEE 246 (344)
Q Consensus 185 ~~~~~~i~~i~~~~--~~PvivK~v~--------~~~~----a~~~~~~G~d~I~v~~~gG~~~---~~g~-~~~~~l~~ 246 (344)
.|..+.++.+|+.+ +.||.+|... +.++ ++.+.++ +|+|.++. |+... ...+ ..++.+.+
T Consensus 194 rf~~eiv~aVr~avg~d~pv~vRls~~~~~~~g~~~~~~~~~a~~l~~~-vd~i~vs~-g~~~~~~~~~~~~~~~~~~~~ 271 (343)
T 3kru_A 194 RFLIEVIDEVRKNWPENKPIFVRVSADDYMEGGINIDMMVEYINMIKDK-VDLIDVSS-GGLLNVDINLYPGYQVKYAET 271 (343)
T ss_dssp HHHHHHHHHHHHTSCTTSCEEEEEECCCSSTTSCCHHHHHHHHHHHTTT-CSEEEEEC-CCSSCCCCCCCTTTTHHHHHH
T ss_pred HHHHHHHHHHHhcCCccCCeEEEeechhhhccCccHHHHHHHHHHhhcc-ccEEeccC-CceEeeeecccCceeehHHHH
Confidence 34567899999999 5899999874 2333 6778888 99999973 22210 1111 24566777
Q ss_pred HHHHccCCCcEEEecCCCCHHHHHHHHHcC-CCEEEEchHHHH
Q 019244 247 VVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 288 (344)
Q Consensus 247 i~~~~~~~~~via~GGIr~g~dv~kalalG-Ad~V~ig~~~l~ 288 (344)
+++.+ ++|||+.|||++++++.++|+.| ||+|++||+++.
T Consensus 272 ir~~~--~iPVi~~Ggi~t~e~Ae~~l~~G~aD~V~iGR~~la 312 (343)
T 3kru_A 272 IKKRC--NIKTSAVGLITTQELAEEILSNERADLVALGRELLR 312 (343)
T ss_dssp HHHHH--TCEEEEESSCCCHHHHHHHHHTTSCSEEEESHHHHH
T ss_pred HHHhc--CcccceeeeeeHHHHHHHHHhchhhHHHHHHHHHhc
Confidence 77777 69999999999999999999998 999999999985
|
| >2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=3.2e-07 Score=88.73 Aligned_cols=99 Identities=12% Similarity=-0.007 Sum_probs=74.3
Q ss_pred CcHHHHHHHHHhcC-CcEEEEeecC-----------HHH----HHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHH
Q 019244 186 LSWKDVKWLQTITK-LPILVKGVLT-----------AED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVK 249 (344)
Q Consensus 186 ~~~~~i~~i~~~~~-~PvivK~v~~-----------~~~----a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~ 249 (344)
+..+.++.+|+.++ -||.+|.... .++ ++.+.++|+|+|.+++..-.+...+ ..++.+.++++
T Consensus 218 ~~~eiv~aVr~avg~~~v~vrls~~~~~~~~~~~~~~~~~~~la~~le~~Gvd~i~v~~~~~~~~~~~-~~~~~~~~ik~ 296 (377)
T 2r14_A 218 FPLEVVDAVAEVFGPERVGIRLTPFLELFGLTDDEPEAMAFYLAGELDRRGLAYLHFNEPDWIGGDIT-YPEGFREQMRQ 296 (377)
T ss_dssp HHHHHHHHHHHHHCGGGEEEEECTTCCCTTCCCSCHHHHHHHHHHHHHHTTCSEEEEECCC------C-CCTTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcEEEEeccccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCcccCCCCc-chHHHHHHHHH
Confidence 45678999999885 3999997531 233 7888999999999975321110001 13456677777
Q ss_pred HccCCCcEEEecCCCCHHHHHHHHHcC-CCEEEEchHHHH
Q 019244 250 ATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 288 (344)
Q Consensus 250 ~~~~~~~via~GGIr~g~dv~kalalG-Ad~V~ig~~~l~ 288 (344)
.+ ++|||+.||| +..++.++|+.| ||+|++||+++.
T Consensus 297 ~~--~iPvi~~Ggi-~~~~a~~~l~~g~aD~V~igR~~l~ 333 (377)
T 2r14_A 297 RF--KGGLIYCGNY-DAGRAQARLDDNTADAVAFGRPFIA 333 (377)
T ss_dssp HC--CSEEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHH
T ss_pred HC--CCCEEEECCC-CHHHHHHHHHCCCceEEeecHHHHh
Confidence 77 7999999999 699999999998 999999999985
|
| >2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A | Back alignment and structure |
|---|
Probab=98.68 E-value=2.9e-08 Score=93.32 Aligned_cols=120 Identities=20% Similarity=0.266 Sum_probs=79.7
Q ss_pred cCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCC-----------------------CCC-------chhhHHHHHHH
Q 019244 198 TKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ-----------------------LDY-------VPATIMALEEV 247 (344)
Q Consensus 198 ~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~-----------------------~~~-------g~~~~~~l~~i 247 (344)
+++|+++ .+.+.+++.++.+.|+|.|.+.|..|+. .+. .+.+++.+.++
T Consensus 124 ~g~~v~~-~~~~~~e~~~a~~~Gad~V~~~G~~g~g~~~~~~~h~rt~~~~i~~l~gi~~~~~~~~~~~~~~~~~~i~~i 202 (305)
T 2nv1_A 124 YTVPFVC-GCRDLGEATRRIAEGASMLRTKGEPGTGNIVEAVRHMRKVNAQVRKVVAMSEDELMTEAKNLGAPYELLLQI 202 (305)
T ss_dssp CSSCEEE-EESSHHHHHHHHHTTCSEEEECCCTTSCCTHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHTCCHHHHHHH
T ss_pred cCCcEEE-EeCCHHHHHHHHHCCCCEEEeccccCccchHHHHhhhhhhhccchhhccccchhhhcccccccccHHHHHHH
Confidence 4566554 4567777888888888888885422210 000 12345667777
Q ss_pred HHHccCCCcEE--EecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHhhhc
Q 019244 248 VKATQGRIPVF--LDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEIT 325 (344)
Q Consensus 248 ~~~~~~~~~vi--a~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~~~i~~l~ 325 (344)
.+.. ++||+ ++|||++++|+.+++.+||++|++|+.++.. .. ....++.+.+.+..++...+..++.++.
T Consensus 203 ~~~~--~iPvi~~a~GGI~~~~d~~~~~~~GadgV~vGsai~~~---~~---p~~~~~~l~~~~~~~~~~~~~~~~~~~~ 274 (305)
T 2nv1_A 203 KKDG--KLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKS---DN---PAKFAKAIVEATTHFTDYKLIAELSKEL 274 (305)
T ss_dssp HHHT--SCSSCEEBCSCCCSHHHHHHHHHTTCSCEEECGGGGGS---SC---HHHHHHHHHHHHHTTTCHHHHHHHTSCC
T ss_pred HHhc--CCCEEEEeccCCCCHHHHHHHHHcCCCEEEEcHHHHcC---CC---HHHHHHHHHHHHHHhcChhhHHHHHHHh
Confidence 6654 78998 9999999999999999999999999999852 11 1235556666666555555554455544
Q ss_pred c
Q 019244 326 R 326 (344)
Q Consensus 326 ~ 326 (344)
+
T Consensus 275 g 275 (305)
T 2nv1_A 275 G 275 (305)
T ss_dssp -
T ss_pred h
Confidence 3
|
| >2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=9.6e-07 Score=78.18 Aligned_cols=116 Identities=16% Similarity=0.162 Sum_probs=81.3
Q ss_pred HHHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHH
Q 019244 188 WKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 267 (344)
Q Consensus 188 ~~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~ 267 (344)
.+.++.. +.++.++++. +.+++++..+.+.|+|+|.+... .+..++.+.++++..+.++||+++|||. .+
T Consensus 91 ~~~~~~~-~~~g~~~~~g-~~t~~e~~~a~~~G~d~v~v~~t-------~~~g~~~~~~l~~~~~~~ipvia~GGI~-~~ 160 (212)
T 2v82_A 91 SEVIRRA-VGYGMTVCPG-CATATEAFTALEAGAQALKIFPS-------SAFGPQYIKALKAVLPSDIAVFAVGGVT-PE 160 (212)
T ss_dssp HHHHHHH-HHTTCEEECE-ECSHHHHHHHHHTTCSEEEETTH-------HHHCHHHHHHHHTTSCTTCEEEEESSCC-TT
T ss_pred HHHHHHH-HHcCCCEEee-cCCHHHHHHHHHCCCCEEEEecC-------CCCCHHHHHHHHHhccCCCeEEEeCCCC-HH
Confidence 3445444 4457777665 78899999999999999988321 1223566666665553259999999997 99
Q ss_pred HHHHHHHcCCCEEEEchHHHHHhhhcChHHHHHHHHHHHHHHHHHHHH
Q 019244 268 DVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMAL 315 (344)
Q Consensus 268 dv~kalalGAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~ 315 (344)
++.+++.+||++|.+|+.++.+- +..+...+.++.+.+.++...++
T Consensus 161 ~i~~~~~~Ga~gv~vGsai~~~~--~~~~d~~~~~~~l~~~~~~~~~~ 206 (212)
T 2v82_A 161 NLAQWIDAGCAGAGLGSDLYRAG--QSVERTAQQAAAFVKAYREAVQL 206 (212)
T ss_dssp THHHHHHHTCSEEEECTTTCCTT--CCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCEEEEChHHhCCC--CCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999987421 11234555666666666655543
|
| >4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A | Back alignment and structure |
|---|
Probab=98.65 E-value=2.8e-08 Score=92.99 Aligned_cols=118 Identities=19% Similarity=0.236 Sum_probs=84.8
Q ss_pred HHHHHHh-cCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCC-----------------------CC-------chh
Q 019244 191 VKWLQTI-TKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQL-----------------------DY-------VPA 239 (344)
Q Consensus 191 i~~i~~~-~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~-----------------------~~-------g~~ 239 (344)
++.+++. .+.++++ .+.+.+++.++.++|+|.|.+.|.+|+.. +. ..+
T Consensus 116 i~~i~~~~~g~~vvv-~v~~~~Ea~~a~~~Gad~I~v~g~~gTG~~~~~v~h~~~~~~eir~l~~~~~d~L~t~~~~~~~ 194 (297)
T 4adt_A 116 YNHINKHKFKTPFVC-GCTNLGEALRRISEGASMIRTKGEAGTGNIIEAIKHIRTVNNEIKYLCSLDESEVYNFAKKLRA 194 (297)
T ss_dssp SCCCCGGGCSSCEEE-EESSHHHHHHHHHHTCSEEEECCCTTSCCCHHHHHHHHHHHHHHHHHHHSCTTTHHHHHHHHTC
T ss_pred HHHHHhcCCCCeEEE-EeCCHHHHHHHHhCCCCEEEECCCcCCCchHHHHHHHHHhhhhhhhhccccccccccccccCCC
Confidence 4555553 4788877 58899999999999999999987765431 01 124
Q ss_pred hHHHHHHHHHHccCCCcEE--EecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhC
Q 019244 240 TIMALEEVVKATQGRIPVF--LDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSG 317 (344)
Q Consensus 240 ~~~~l~~i~~~~~~~~~vi--a~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G 317 (344)
+++.++++.+.+ ++|++ +.|||.++.|+.+++.+|||+|++|+.++.+ +.....++.|.+.+..++...+
T Consensus 195 ~~~ll~~i~~~~--~iPVivvA~GGI~t~~dv~~~~~~GAdgVlVGsai~~a------~dp~~~~~~l~~ai~~~~~~~~ 266 (297)
T 4adt_A 195 PIDLILLTRKLK--RLPVVNFAAGGIATPADAAMCMQLGMDGVFVGSGIFES------ENPQKMASSIVMAVSNFNNPKI 266 (297)
T ss_dssp CHHHHHHHHHHT--SCSSEEEEESCCCSHHHHHHHHHTTCSCEEESHHHHTS------SCHHHHHHHHHHHHHTTTCHHH
T ss_pred CHHHHHHHHHhc--CCCeEEEecCCCCCHHHHHHHHHcCCCEEEEhHHHHcC------CCHHHHHHHHHHHHHhhCCHHH
Confidence 567788887765 57776 9999999999999999999999999999853 1122344555555554444333
|
| >2uv8_G Fatty acid synthase subunit beta (FAS1); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_G* 3hmj_G* | Back alignment and structure |
|---|
Probab=98.65 E-value=1.1e-07 Score=108.12 Aligned_cols=194 Identities=11% Similarity=0.052 Sum_probs=115.5
Q ss_pred eeecccccccceeecccccccccCChhhHHHHHHHHHcCCcc-----ccCCHHHHHHHHHHHHHcC--CcEEEeccCCc-
Q 019244 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM-----VYKDRNVVAQLVRRAERAG--FKAIALTVDTP- 134 (344)
Q Consensus 63 t~l~g~~l~~Pi~iapm~~~~~~~~~~~~~lA~aA~~~g~~~-----~~~d~~~~~~~i~~a~~ag--~~~l~~tvd~~- 134 (344)
|+++|+ .||+.++|+... + .-.|+.|++++|... -+.+++..++-|+++++.- -+.+.+|+-.+
T Consensus 584 t~llg~---~PIi~~gM~~~~-~----~~~lvaAvsnAGglg~l~~~~~~~~e~l~~~I~~~~~~t~~~~~~gvN~~~~~ 655 (2051)
T 2uv8_G 584 SKLIGR---PPLLVPGMTPCT-V----SPDFVAATTNAGYTIELAGGGYFSAAGMTAAIDSVVSQIEKGSTFGINLIYVN 655 (2051)
T ss_dssp HHHHSS---CSEEECCCHHHH-T----CHHHHHHHHHTTCEEEEEGGGCCSHHHHHHHHHHHHHHSCTTCCEEEEEETTC
T ss_pred HHhhCc---cceecCCCcccc-c----cHHHHHHHHcCCcEEEEccCCCCCHHHHHHHHHHHHHhcCCCCceEEEEeecC
Confidence 446783 699999997322 1 335899999999766 2468888888888887631 12233332111
Q ss_pred -c-ccccHHHHHhhcCCCCcccccccccccccccccccchhhHHHHhhcCCCCCcHHHHHHHHHhcCCcEEEEeecC---
Q 019244 135 -R-LGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLT--- 209 (344)
Q Consensus 135 -~-~g~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~PvivK~v~~--- 209 (344)
. ..+.. ++.... +..|... +. .....+ ...++....+.+.+++++|..-..+
T Consensus 656 ~~~~~~~~-~~~~~~-~~~gv~i--------~~-----------v~~~ag--~p~~~~~~~~i~~lG~~vi~~~~~~~~a 712 (2051)
T 2uv8_G 656 PFMLQWGI-PLIKEL-RSKGYPI--------QF-----------LTIGAG--VPSLEVASEYIETLGLKYLGLKPGSIDA 712 (2051)
T ss_dssp TTHHHHHH-HHHHHH-HHTTCSE--------EE-----------EEEESS--CCCHHHHHHHHHHSCCSCEEECCCSHHH
T ss_pred hhhhhhhH-HHHHHH-HHcCCCc--------ce-----------EEecCC--CCchhhHHHHHHHcCCEEEEecCchHHH
Confidence 0 00000 000000 0000000 00 000011 1234433333333488888654433
Q ss_pred HHHHHHHHHcCCcEE---EEcc--CCCCC--CCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHH---------
Q 019244 210 AEDARIAVQAGAAGI---IVSN--HGARQ--LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKAL--------- 273 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I---~v~~--~gG~~--~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kal--------- 273 (344)
...++.+.++|+|++ ++.| .||+. .|...+++..++++++.+ ++|||+.|||.+|.+++.+|
T Consensus 713 ~~~~~~~~~~g~d~~ii~~~~G~eaGGH~g~~d~~~~~l~l~~~v~~~~--~ipviaaGGi~dg~~~~aaL~g~w~~~~g 790 (2051)
T 2uv8_G 713 ISQVINIAKAHPNFPIALQWTGGRGGGHHSFEDAHTPMLQMYSKIRRHP--NIMLIFGSGFGSADDTYPYLTGEWSTKFD 790 (2051)
T ss_dssp HHHHHHHHHHSTTSCEEEEECCSSCSEECCSCCSSHHHHHHHHHHTTCT--TBCCEEESSCCSHHHHTHHHHTCGGGTTT
T ss_pred HHHHHHHHHhCCCceeEEEEEccCcCCCCCcccccccHHHHHHHHHhcC--CceEEEeCCCCCHHHHHHHHccccccccC
Confidence 345677888899993 3334 34541 233456667788888766 79999999999999999999
Q ss_pred --HcCCCEEEEchHHHHH
Q 019244 274 --ALGASGIFIGRPVVYS 289 (344)
Q Consensus 274 --alGAd~V~ig~~~l~~ 289 (344)
+||||+|+||+.|+-+
T Consensus 791 ~~~lgadGv~~GTrf~~t 808 (2051)
T 2uv8_G 791 YPPMPFDGFLFGSRVMIA 808 (2051)
T ss_dssp CCCCCCSCEECSGGGTTS
T ss_pred ccCCCCceeeechHHHhC
Confidence 9999999999999854
|
| >1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ... | Back alignment and structure |
|---|
Probab=98.65 E-value=1.2e-06 Score=80.78 Aligned_cols=69 Identities=17% Similarity=0.224 Sum_probs=50.5
Q ss_pred HHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhc--ChHHHHHHHHHHHHHHHH
Q 019244 241 IMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAE--GEKGVRRVLEMLREEFEL 311 (344)
Q Consensus 241 ~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~--G~~~v~~~l~~l~~el~~ 311 (344)
.+.+.++++.. ++||+++|||++++++.+++..|||+|.+|+.++..+... ..+...+.+..+.++++.
T Consensus 194 ~~~i~~lr~~~--~~pi~vggGI~t~e~~~~~~~agAD~vVVGSai~~~~~~~~~~~~~~~~~~~~~~~~l~~ 264 (268)
T 1qop_A 194 HHLIEKLKEYH--AAPALQGFGISSPEQVSAAVRAGAAGAISGSAIVKIIEKNLASPKQMLAELRSFVSAMKA 264 (268)
T ss_dssp HHHHHHHHHTT--CCCEEEESSCCSHHHHHHHHHTTCSEEEECHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcc--CCcEEEECCCCCHHHHHHHHHcCCCEEEEChHHhhhHhhcccCchHHHHHHHHHHHHHHH
Confidence 56677777655 7999999999999999999999999999999998865421 112222344555555543
|
| >1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ... | Back alignment and structure |
|---|
Probab=98.65 E-value=1.1e-06 Score=84.57 Aligned_cols=99 Identities=12% Similarity=-0.001 Sum_probs=76.3
Q ss_pred CCcHHHHHHHHHhcC-CcEEEEeecC------------HHH----HHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHH
Q 019244 185 SLSWKDVKWLQTITK-LPILVKGVLT------------AED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEV 247 (344)
Q Consensus 185 ~~~~~~i~~i~~~~~-~PvivK~v~~------------~~~----a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i 247 (344)
.+..+.++.+|+.++ -||.+|+... .++ ++.+.++|+|+|.+++..-.+... ..++.+.++
T Consensus 212 r~~~eiv~avr~~vg~~~v~vrls~~~~~~~~~~~~~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~--~~~~~~~~v 289 (364)
T 1vyr_A 212 RLVLEVVDAVCNEWSADRIGIRVSPIGTFQNVDNGPNEEADALYLIEELAKRGIAYLHMSETDLAGGKP--YSEAFRQKV 289 (364)
T ss_dssp HHHHHHHHHHHHHSCGGGEEEEECCSSCBTTBCCCTTHHHHHHHHHHHHHHTTCSEEEEECCBTTBCCC--CCHHHHHHH
T ss_pred hhHHHHHHHHHHhcCCCcEEEEEccccccccccCCCCCHHHHHHHHHHHHHhCCCEEEEecCcccCCCc--ccHHHHHHH
Confidence 345678999999984 3999998632 223 788999999999997632111001 134567778
Q ss_pred HHHccCCCcEEEecCCCCHHHHHHHHHcC-CCEEEEchHHHH
Q 019244 248 VKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 288 (344)
Q Consensus 248 ~~~~~~~~~via~GGIr~g~dv~kalalG-Ad~V~ig~~~l~ 288 (344)
++.+ ++|||+.||| +..++.++|+.| ||+|++||+++.
T Consensus 290 ~~~~--~iPvi~~Ggi-t~~~a~~~l~~g~aD~V~~gR~~l~ 328 (364)
T 1vyr_A 290 RERF--HGVIIGAGAY-TAEKAEDLIGKGLIDAVAFGRDYIA 328 (364)
T ss_dssp HHHC--CSEEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHH
T ss_pred HHHC--CCCEEEECCc-CHHHHHHHHHCCCccEEEECHHHHh
Confidence 7777 7999999999 899999999998 999999999985
|
| >2hsa_B 12-oxophytodienoate reductase 3; alpha beta 8 barrel, flavoprotein, jasmonate biosynthesis, oxidoreductase; HET: FMN; 1.50A {Solanum lycopersicum} PDB: 2hs6_A* 3hgs_A* 2hs8_A* 3hgo_A* 1q45_A* 2g5w_A* 2q3o_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=1.1e-06 Score=85.63 Aligned_cols=101 Identities=13% Similarity=-0.009 Sum_probs=76.0
Q ss_pred CCcHHHHHHHHHhcC-CcEEEEeecC---------------HHHHHHHHHcC------CcEEEEccCCCCCCCC------
Q 019244 185 SLSWKDVKWLQTITK-LPILVKGVLT---------------AEDARIAVQAG------AAGIIVSNHGARQLDY------ 236 (344)
Q Consensus 185 ~~~~~~i~~i~~~~~-~PvivK~v~~---------------~~~a~~~~~~G------~d~I~v~~~gG~~~~~------ 236 (344)
.|..+.++.+|+.++ .||.+|.... .+.++.+.++| +|+|.+++..-.+...
T Consensus 222 rf~~Eiv~aVr~avg~~~V~vRls~~~~~~g~~~~~~~~~~~~la~~le~~G~~gg~~vd~i~v~~~~~~~~~~~~~~~~ 301 (402)
T 2hsa_B 222 KFITQVVQAVVSAIGADRVGVRVSPAIDHLDAMDSNPLSLGLAVVERLNKIQLHSGSKLAYLHVTQPRYVAYGQTEAGRL 301 (402)
T ss_dssp HHHHHHHHHHHHHHCGGGEEEEECSSCCSTTCCCSCHHHHHHHHHHHHHHHHHHHTSCCSEEEEECCCCCTTTTSSSTTT
T ss_pred HHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCCCHHHHHHHHHHHHhcCCccCCceEEEEEecCccccccCCccccc
Confidence 345678999999985 5999997531 23467888999 9999997632111000
Q ss_pred --chhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcC-CCEEEEchHHHH
Q 019244 237 --VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 288 (344)
Q Consensus 237 --g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalG-Ad~V~ig~~~l~ 288 (344)
+...++.+.++++.+ ++|||+.||| ++.++.++|+.| ||+|++||+++.
T Consensus 302 ~~~~~~~~~~~~vk~~~--~iPvi~~G~i-~~~~a~~~l~~g~aD~V~igR~~l~ 353 (402)
T 2hsa_B 302 GSEEEEARLMRTLRNAY--QGTFICSGGY-TRELGIEAVAQGDADLVSYGRLFIS 353 (402)
T ss_dssp THHHHHHHHHHHHHHHC--SSCEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHH
T ss_pred cCCcchHHHHHHHHHHC--CCCEEEeCCC-CHHHHHHHHHCCCCceeeecHHHHh
Confidence 112355667777777 7899999999 999999999998 999999999985
|
| >3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=98.63 E-value=1.6e-06 Score=79.97 Aligned_cols=123 Identities=15% Similarity=0.195 Sum_probs=81.2
Q ss_pred cHHHHHHHHHh-cCCcEEEEeecC-------HHHHHHHHHcCCcEEEEccC---------------CCC--------C--
Q 019244 187 SWKDVKWLQTI-TKLPILVKGVLT-------AEDARIAVQAGAAGIIVSNH---------------GAR--------Q-- 233 (344)
Q Consensus 187 ~~~~i~~i~~~-~~~PvivK~v~~-------~~~a~~~~~~G~d~I~v~~~---------------gG~--------~-- 233 (344)
.++.++++|+. .++|+++-+-.+ ..-++.+.++|+|++++..- |=. .
T Consensus 84 ~~~~v~~~r~~~~~~Pivlm~Y~n~v~~~g~~~f~~~~~~aGvdGvIipDlp~ee~~~~~~~~~~~gl~~I~lvap~t~~ 163 (271)
T 3nav_A 84 CFELIAQIRARNPETPIGLLMYANLVYARGIDDFYQRCQKAGVDSVLIADVPTNESQPFVAAAEKFGIQPIFIAPPTASD 163 (271)
T ss_dssp HHHHHHHHHHHCTTSCEEEEECHHHHHHTCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHHHHHTTCEEEEEECTTCCH
T ss_pred HHHHHHHHHhcCCCCCEEEEecCcHHHHHhHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHcCCeEEEEECCCCCH
Confidence 45678888887 688988754322 23478888999998777421 100 0
Q ss_pred ------------------CC--Cch------hhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHH
Q 019244 234 ------------------LD--YVP------ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 287 (344)
Q Consensus 234 ------------------~~--~g~------~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l 287 (344)
.. .|. ...+.+.++++.. ++||++.+||++++++.+++..|||+|.+|+.++
T Consensus 164 eri~~i~~~~~gfiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~--~~Pv~vGfGIst~e~~~~~~~~gADgvIVGSAiv 241 (271)
T 3nav_A 164 ETLRAVAQLGKGYTYLLSRAGVTGAETKANMPVHALLERLQQFD--APPALLGFGISEPAQVKQAIEAGAAGAISGSAVV 241 (271)
T ss_dssp HHHHHHHHHCCSCEEECCCC--------CCHHHHHHHHHHHHTT--CCCEEECSSCCSHHHHHHHHHTTCSEEEESHHHH
T ss_pred HHHHHHHHHCCCeEEEEeccCCCCcccCCchhHHHHHHHHHHhc--CCCEEEECCCCCHHHHHHHHHcCCCEEEECHHHH
Confidence 00 111 1234566666654 7999999999999999999999999999999999
Q ss_pred HHhhhc--ChHHHHHHHHHHHHHHHH
Q 019244 288 YSLAAE--GEKGVRRVLEMLREEFEL 311 (344)
Q Consensus 288 ~~~~~~--G~~~v~~~l~~l~~el~~ 311 (344)
..+... ..+...+.+..+.++|+.
T Consensus 242 ~~i~~~~~~~~~~~~~~~~~~~~l~~ 267 (271)
T 3nav_A 242 KIIETHLDNPAKQLTELANFTQAMKK 267 (271)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhccchHHHHHHHHHHHHHHHH
Confidence 876532 222233344555556554
|
| >1icp_A OPR1, 12-oxophytodienoate reductase 1; beta-alpha-barrel, protein-FMN-PEG complex, oxidoreductase; HET: FMN 2PE; 1.90A {Solanum lycopersicum} SCOP: c.1.4.1 PDB: 1icq_A* 1ics_A* 3hgr_A* 1vji_A* 2q3r_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=4.3e-07 Score=87.85 Aligned_cols=100 Identities=14% Similarity=-0.041 Sum_probs=72.9
Q ss_pred CcHHHHHHHHHhcC-CcEEEEeecC---------------HHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHH
Q 019244 186 LSWKDVKWLQTITK-LPILVKGVLT---------------AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVK 249 (344)
Q Consensus 186 ~~~~~i~~i~~~~~-~PvivK~v~~---------------~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~ 249 (344)
+..+.++.+|+.++ -||.+|.... .+.++.+.++|+|+|.+++..-.+...+......+.++++
T Consensus 219 ~~~eiv~aVr~avg~~~V~vrls~~~~~~g~~~~~~~~~~~~la~~le~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~vr~ 298 (376)
T 1icp_A 219 FALEIVEAVANEIGSDRVGIRISPFAHYNEAGDTNPTALGLYMVESLNKYDLAYCHVVEPRMKTAWEKIECTESLVPMRK 298 (376)
T ss_dssp HHHHHHHHHHHHHCGGGEEEEECTTCCTTTCCCSCHHHHHHHHHHHHGGGCCSEEEEECCSCCC------CCCCSHHHHH
T ss_pred HHHHHHHHHHHHhcCCceEEEeccccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCcccCCCCccccHHHHHHHHH
Confidence 45678999999985 3999998621 2346788899999999975321110001112234566677
Q ss_pred HccCCCcEEEecCCCCHHHHHHHHHcC-CCEEEEchHHHH
Q 019244 250 ATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 288 (344)
Q Consensus 250 ~~~~~~~via~GGIr~g~dv~kalalG-Ad~V~ig~~~l~ 288 (344)
.+ ++|||+.||| +..++.++|+.| ||+|++||+++.
T Consensus 299 ~~--~iPvi~~G~i-~~~~a~~~l~~g~aD~V~~gR~~l~ 335 (376)
T 1icp_A 299 AY--KGTFIVAGGY-DREDGNRALIEDRADLVAYGRLFIS 335 (376)
T ss_dssp HC--CSCEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHH
T ss_pred Hc--CCCEEEeCCC-CHHHHHHHHHCCCCcEEeecHHHHh
Confidence 66 6899999999 899999999998 999999999985
|
| >4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3} | Back alignment and structure |
|---|
Probab=98.63 E-value=3.2e-07 Score=82.74 Aligned_cols=177 Identities=16% Similarity=0.144 Sum_probs=111.7
Q ss_pred HHHHHHHcCCcc--ccCCHHHHHHHHHHHHHcCCcEEEeccCCccccccHHHHHhhcCCCC-cccccccccccccccccc
Q 019244 93 TARAASAAGTIM--VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP-FLTLKNFQGLDLGKMDEA 169 (344)
Q Consensus 93 lA~aA~~~g~~~--~~~d~~~~~~~i~~a~~ag~~~l~~tvd~~~~g~r~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~ 169 (344)
+.....+.++.- ...+++....+.+.+.++|.+.+.+|..+|..-...+.++..+ |. -.+...+ +..+.....
T Consensus 27 ~~~~l~~~~vv~Vir~~~~~~a~~~a~al~~gGi~~iEvt~~t~~a~e~I~~l~~~~--~~~~iGaGTV--lt~~~a~~A 102 (232)
T 4e38_A 27 INNQLKALKVIPVIAIDNAEDIIPLGKVLAENGLPAAEITFRSDAAVEAIRLLRQAQ--PEMLIGAGTI--LNGEQALAA 102 (232)
T ss_dssp HHHHHHHHCEEEEECCSSGGGHHHHHHHHHHTTCCEEEEETTSTTHHHHHHHHHHHC--TTCEEEEECC--CSHHHHHHH
T ss_pred HHHHHHhCCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHhC--CCCEEeECCc--CCHHHHHHH
Confidence 334445556543 3457777788888899999999999988775322233444443 21 0111111 110000000
Q ss_pred cchhhHHHHhhcCCCCCcHHHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHH
Q 019244 170 NDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVK 249 (344)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~ 249 (344)
...+.+..++ +.++.+.++..++ .++|++. ++.|+.++.++.++|+|.|.++-.. .. +| ...|+.++.
T Consensus 103 i~AGA~fIvs----P~~~~~vi~~~~~-~gi~~ip-Gv~TptEi~~A~~~Gad~vK~FPa~--~~-gG---~~~lkal~~ 170 (232)
T 4e38_A 103 KEAGATFVVS----PGFNPNTVRACQE-IGIDIVP-GVNNPSTVEAALEMGLTTLKFFPAE--AS-GG---ISMVKSLVG 170 (232)
T ss_dssp HHHTCSEEEC----SSCCHHHHHHHHH-HTCEEEC-EECSHHHHHHHHHTTCCEEEECSTT--TT-TH---HHHHHHHHT
T ss_pred HHcCCCEEEe----CCCCHHHHHHHHH-cCCCEEc-CCCCHHHHHHHHHcCCCEEEECcCc--cc-cC---HHHHHHHHH
Confidence 1111111222 3355566777666 4888876 5789999999999999999996421 01 12 356666665
Q ss_pred HccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHH
Q 019244 250 ATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 287 (344)
Q Consensus 250 ~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l 287 (344)
.+ .++|+++.|||. .+++..++++||.++.+|+.+.
T Consensus 171 p~-p~ip~~ptGGI~-~~n~~~~l~aGa~~~vgGs~l~ 206 (232)
T 4e38_A 171 PY-GDIRLMPTGGIT-PSNIDNYLAIPQVLACGGTWMV 206 (232)
T ss_dssp TC-TTCEEEEBSSCC-TTTHHHHHTSTTBCCEEECGGG
T ss_pred Hh-cCCCeeeEcCCC-HHHHHHHHHCCCeEEEECchhc
Confidence 55 379999999995 8999999999999998888765
|
| >3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=98.63 E-value=1.1e-06 Score=80.99 Aligned_cols=123 Identities=17% Similarity=0.173 Sum_probs=80.2
Q ss_pred cHHHHHHHHHh-cCCcEEEEeecCH-------HHHHHHHHcCCcEEEEccCC--------------C----------CC-
Q 019244 187 SWKDVKWLQTI-TKLPILVKGVLTA-------EDARIAVQAGAAGIIVSNHG--------------A----------RQ- 233 (344)
Q Consensus 187 ~~~~i~~i~~~-~~~PvivK~v~~~-------~~a~~~~~~G~d~I~v~~~g--------------G----------~~- 233 (344)
.++.++++|+. .++|+++-.-.++ .-++.+.++|+|++++..-. | +.
T Consensus 82 ~~~~v~~ir~~~~~~Pivlm~Y~npv~~~g~e~f~~~~~~aGvdgvii~Dlp~ee~~~~~~~~~~~gl~~i~liaP~t~~ 161 (267)
T 3vnd_A 82 CFDIITKVRAQHPDMPIGLLLYANLVFANGIDEFYTKAQAAGVDSVLIADVPVEESAPFSKAAKAHGIAPIFIAPPNADA 161 (267)
T ss_dssp HHHHHHHHHHHCTTCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHHHHHTTCEEECEECTTCCH
T ss_pred HHHHHHHHHhcCCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEeCCCCHhhHHHHHHHHHHcCCeEEEEECCCCCH
Confidence 35678888887 6888877543232 23778888888888774210 0 00
Q ss_pred ------------------CC--Cch------hhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHH
Q 019244 234 ------------------LD--YVP------ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 287 (344)
Q Consensus 234 ------------------~~--~g~------~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l 287 (344)
.. .|. ...+.+.++++.. ++||++.|||++++++.+++..|||+|.+|+.++
T Consensus 162 eri~~i~~~~~gfvY~vS~~GvTG~~~~~~~~~~~~v~~vr~~~--~~pv~vGfGI~~~e~~~~~~~~gADgvVVGSaiv 239 (267)
T 3vnd_A 162 DTLKMVSEQGEGYTYLLSRAGVTGTESKAGEPIENILTQLAEFN--APPPLLGFGIAEPEQVRAAIKAGAAGAISGSAVV 239 (267)
T ss_dssp HHHHHHHHHCCSCEEESCCCCCC--------CHHHHHHHHHTTT--CCCEEECSSCCSHHHHHHHHHTTCSEEEECHHHH
T ss_pred HHHHHHHHhCCCcEEEEecCCCCCCccCCcHHHHHHHHHHHHhc--CCCEEEECCcCCHHHHHHHHHcCCCEEEECHHHH
Confidence 00 111 1234566665544 7999999999999999999999999999999998
Q ss_pred HHhhhc--ChHHHHHHHHHHHHHHHH
Q 019244 288 YSLAAE--GEKGVRRVLEMLREEFEL 311 (344)
Q Consensus 288 ~~~~~~--G~~~v~~~l~~l~~el~~ 311 (344)
..+... ..+...+.+..+.++|+.
T Consensus 240 ~~i~~~~~~~~~~~~~~~~~~~~l~~ 265 (267)
T 3vnd_A 240 KIIEAHQHDEATLLAKLAEFTTAMKA 265 (267)
T ss_dssp HHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccChHHHHHHHHHHHHHHHh
Confidence 876532 122233345555566553
|
| >4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=98.60 E-value=1.2e-06 Score=84.31 Aligned_cols=92 Identities=20% Similarity=0.063 Sum_probs=72.7
Q ss_pred CcHHHHHHHHHhcC-CcEEEEeecC-----------HHH----HHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHH
Q 019244 186 LSWKDVKWLQTITK-LPILVKGVLT-----------AED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVK 249 (344)
Q Consensus 186 ~~~~~i~~i~~~~~-~PvivK~v~~-----------~~~----a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~ 249 (344)
|..+.++.+|+.++ -||.+|.... .++ ++.+.++|+|+|.+++.. .+. ..+.++++
T Consensus 205 f~~eiv~aVr~~vg~~~v~vRls~~~~~~g~~~~~~~~~~~~la~~l~~~Gvd~i~v~~~~-----~~~---~~~~~ik~ 276 (362)
T 4ab4_A 205 LLLEVTDAAIEVWGAQRVGVHLAPRADAHDMGDADRAETFTYVARELGKRGIAFICSRERE-----ADD---SIGPLIKE 276 (362)
T ss_dssp HHHHHHHHHHHHHCGGGEEEEECTTCCSSSCCCTTHHHHHHHHHHHHHHTTCSEEEEECCC-----CTT---CCHHHHHH
T ss_pred HHHHHHHHHHHhcCCCceEEEeeccccccccCCCCcHHHHHHHHHHHHHhCCCEEEECCCC-----CCH---HHHHHHHH
Confidence 45678999999984 3999998632 222 678889999999997632 122 23556666
Q ss_pred HccCCCcEEEecCCCCHHHHHHHHHcC-CCEEEEchHHHH
Q 019244 250 ATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 288 (344)
Q Consensus 250 ~~~~~~~via~GGIr~g~dv~kalalG-Ad~V~ig~~~l~ 288 (344)
.+ ++|||+.||| +..++.++|+.| ||+|++||+++.
T Consensus 277 ~~--~iPvi~~Ggi-t~e~a~~~l~~g~aD~V~iGR~~la 313 (362)
T 4ab4_A 277 AF--GGPYIVNERF-DKASANAALASGKADAVAFGVPFIA 313 (362)
T ss_dssp HH--CSCEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHH
T ss_pred HC--CCCEEEeCCC-CHHHHHHHHHcCCccEEEECHHhHh
Confidence 66 6899999999 999999999998 999999999985
|
| >3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} SCOP: c.1.4.0 | Back alignment and structure |
|---|
Probab=98.59 E-value=1.2e-06 Score=84.09 Aligned_cols=93 Identities=15% Similarity=-0.010 Sum_probs=73.3
Q ss_pred CCcHHHHHHHHHhcC-CcEEEEeecC-----------H----HHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHH
Q 019244 185 SLSWKDVKWLQTITK-LPILVKGVLT-----------A----EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVV 248 (344)
Q Consensus 185 ~~~~~~i~~i~~~~~-~PvivK~v~~-----------~----~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~ 248 (344)
.|..+.++.+|+.++ -||.+|.... . +.++.+.++|+|+|.+++.. .++ ..+..++
T Consensus 212 rf~~evv~aVr~~vg~~~v~vRls~~~~~~g~~~~~~~~~~~~la~~l~~~Gvd~i~v~~~~-----~~~---~~~~~ik 283 (361)
T 3gka_A 212 RLLLEVVDAAIDVWSAARVGVHLAPRGDAHTMGDSDPAATFGHVARELGRRRIAFLFARESF-----GGD---AIGQQLK 283 (361)
T ss_dssp HHHHHHHHHHHHHHCGGGEEEEECTTCCSSSCCCSCHHHHHHHHHHHHHHTTCSEEEEECCC-----STT---CCHHHHH
T ss_pred HHHHHHHHHHHHHcCCCeEEEecccccccCCCCCCCcHHHHHHHHHHHHHcCCCEEEECCCC-----CCH---HHHHHHH
Confidence 445678999999984 3999998632 2 23678889999999997632 122 3355666
Q ss_pred HHccCCCcEEEecCCCCHHHHHHHHHcC-CCEEEEchHHHH
Q 019244 249 KATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 288 (344)
Q Consensus 249 ~~~~~~~~via~GGIr~g~dv~kalalG-Ad~V~ig~~~l~ 288 (344)
+.+ ++|||+.||| +.+++.++|+.| ||+|++||+++.
T Consensus 284 ~~~--~iPvi~~Ggi-t~e~a~~~l~~G~aD~V~iGR~~la 321 (361)
T 3gka_A 284 AAF--GGPFIVNENF-TLDSAQAALDAGQADAVAWGKLFIA 321 (361)
T ss_dssp HHH--CSCEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHH
T ss_pred HHc--CCCEEEeCCC-CHHHHHHHHHcCCccEEEECHHhHh
Confidence 666 6899999999 999999999998 999999999985
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 | Back alignment and structure |
|---|
Probab=98.57 E-value=3.2e-06 Score=87.45 Aligned_cols=100 Identities=16% Similarity=0.084 Sum_probs=74.9
Q ss_pred cHHHHHHHHHhc--CCcEEEEeec--------CH----HHHHHHHHcCCcEEEEccCCCCC------CCCch-hhHHHHH
Q 019244 187 SWKDVKWLQTIT--KLPILVKGVL--------TA----EDARIAVQAGAAGIIVSNHGARQ------LDYVP-ATIMALE 245 (344)
Q Consensus 187 ~~~~i~~i~~~~--~~PvivK~v~--------~~----~~a~~~~~~G~d~I~v~~~gG~~------~~~g~-~~~~~l~ 245 (344)
..+.++.+|+.+ +.||.+|... +. +.++.+.++|+|+|.+++..... ...++ ..++.+.
T Consensus 194 ~~eiv~avr~~vG~~~~v~vrls~~~~~~~g~~~~~~~~~a~~l~~~g~d~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (671)
T 1ps9_A 194 AVEVVRAVRERVGNDFIIIYRLSMLDLVEDGGTFAETVELAQAIEAAGATIINTGIGWHEARIPTIATPVPRGAFSWVTR 273 (671)
T ss_dssp HHHHHHHHHHHHCSSSEEEEEEEEECCSTTCCCHHHHHHHHHHHHHHTCSEEEEEECBTTCSSCSSSTTSCTTTTHHHHH
T ss_pred HHHHHHHHHHHcCCCceEEEEECccccCCCCCCHHHHHHHHHHHHhcCCCEEEcCCCccccccccccccCCcchHHHHHH
Confidence 346789999998 6899999862 33 33678889999999997521100 01111 1245566
Q ss_pred HHHHHccCCCcEEEecCCCCHHHHHHHHHcC-CCEEEEchHHHH
Q 019244 246 EVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 288 (344)
Q Consensus 246 ~i~~~~~~~~~via~GGIr~g~dv~kalalG-Ad~V~ig~~~l~ 288 (344)
++++.+ ++||++.|||.++.++.++++.| ||+|++||+++.
T Consensus 274 ~i~~~~--~iPvi~~Ggi~~~~~a~~~l~~g~aD~V~~gR~~l~ 315 (671)
T 1ps9_A 274 KLKGHV--SLPLVTTNRINDPQVADDILSRGDADMVSMARPFLA 315 (671)
T ss_dssp HHTTSC--SSCEEECSSCCSHHHHHHHHHTTSCSEEEESTHHHH
T ss_pred HHHHhc--CceEEEeCCCCCHHHHHHHHHcCCCCEEEeCHHHHh
Confidence 666555 79999999999999999999998 999999999985
|
| >1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A | Back alignment and structure |
|---|
Probab=98.57 E-value=9e-07 Score=81.48 Aligned_cols=95 Identities=19% Similarity=0.227 Sum_probs=69.6
Q ss_pred HHHHHHHhc--CCcEEEEeecCHHHHHHHHHcCCcEEEEccC-CCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCH
Q 019244 190 DVKWLQTIT--KLPILVKGVLTAEDARIAVQAGAAGIIVSNH-GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 266 (344)
Q Consensus 190 ~i~~i~~~~--~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~-gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g 266 (344)
.++..++.+ ++.++.-.+.+.+.++++.+.|+|+|...+. -|+. .+..+.+.+..+++.. ++||++.|||+++
T Consensus 115 ~~~~a~~~~~~g~~vi~~~~~~~~~a~~~~~~gad~v~~~~~~~Gt~--~~~~~~~~l~~i~~~~--~iPviv~gGI~t~ 190 (264)
T 1xm3_A 115 TLKASEQLLEEGFIVLPYTSDDVVLARKLEELGVHAIMPGASPIGSG--QGILNPLNLSFIIEQA--KVPVIVDAGIGSP 190 (264)
T ss_dssp HHHHHHHHHHTTCCEEEEECSCHHHHHHHHHHTCSCBEECSSSTTCC--CCCSCHHHHHHHHHHC--SSCBEEESCCCSH
T ss_pred HHHHHHHHHCCCeEEEEEcCCCHHHHHHHHHhCCCEEEECCcccCCC--CCCCCHHHHHHHHhcC--CCCEEEEeCCCCH
Confidence 455565543 5555543446788999999999999944221 1211 1223356777777654 7999999999999
Q ss_pred HHHHHHHHcCCCEEEEchHHHH
Q 019244 267 TDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 267 ~dv~kalalGAd~V~ig~~~l~ 288 (344)
+|+.+++++|||+|.+|+.++.
T Consensus 191 eda~~~~~~GAdgViVGSAi~~ 212 (264)
T 1xm3_A 191 KDAAYAMELGADGVLLNTAVSG 212 (264)
T ss_dssp HHHHHHHHTTCSEEEESHHHHT
T ss_pred HHHHHHHHcCCCEEEEcHHHhC
Confidence 9999999999999999999875
|
| >2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=5e-08 Score=91.24 Aligned_cols=121 Identities=20% Similarity=0.240 Sum_probs=88.6
Q ss_pred CCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCC---------------------CC-C--------chhhHHHHHHHH
Q 019244 199 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ---------------------LD-Y--------VPATIMALEEVV 248 (344)
Q Consensus 199 ~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~---------------------~~-~--------g~~~~~~l~~i~ 248 (344)
++++++. +.+++++..+.++|+|.|.+.+..|.. .+ . .++.++.+.+++
T Consensus 125 ~i~l~~~-v~~~~~~~~a~~~Gad~I~v~G~~~~g~~~e~~~~~~~~~~~i~~~~g~t~~~~~~~~~~~~~~~~~i~~l~ 203 (297)
T 2zbt_A 125 KVPFVCG-ARNLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHARTMWKEIRYVQSLREDELMAYAKEIGAPFELVKWVH 203 (297)
T ss_dssp SSCEEEE-ESSHHHHHHHHHTTCSEEEECCCSSSCCTHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHTCCHHHHHHHH
T ss_pred CceEEee-cCCHHHHHHHHHcCCCEEEEcccccCcchHHHHhhHHHHHHHHHHcCCcCCCCchhhhhcchhhHHHHHHHH
Confidence 6787765 578999999999999999885311100 00 0 123456677777
Q ss_pred HHccCCCcEE--EecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHhhhcc
Q 019244 249 KATQGRIPVF--LDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITR 326 (344)
Q Consensus 249 ~~~~~~~~vi--a~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~~~i~~l~~ 326 (344)
+.. ++|++ ++|||++.+|+.+++.+|||+|++|+.++.+ .. ....++.+++.++..+...++.+++++.+
T Consensus 204 ~~~--~~pvi~~a~GGI~~~e~i~~~~~aGadgvvvGsai~~~---~d---p~~~~~~l~~~i~~~~~~~~~~~~~~~~g 275 (297)
T 2zbt_A 204 DHG--RLPVVNFAAGGIATPADAALMMHLGMDGVFVGSGIFKS---GD---PRKRARAIVRAVAHYNDPEVLAEVSEDLG 275 (297)
T ss_dssp HHS--SCSSCEEBCSSCCSHHHHHHHHHTTCSEEEECGGGGGS---SC---HHHHHHHHHHHHHTTTCHHHHHHHHTTCC
T ss_pred Hhc--CCCcEEEeeCCCCCHHHHHHHHHcCCCEEEEchHHhCC---CC---HHHHHHHHHHHHHHHhchHhhhHHHHhcC
Confidence 654 68888 9999999999999999999999999998742 11 34566777777777777777778888876
Q ss_pred cc
Q 019244 327 DH 328 (344)
Q Consensus 327 ~~ 328 (344)
..
T Consensus 276 ~~ 277 (297)
T 2zbt_A 276 EP 277 (297)
T ss_dssp CC
T ss_pred ce
Confidence 55
|
| >1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=1.2e-06 Score=78.09 Aligned_cols=95 Identities=19% Similarity=0.144 Sum_probs=67.4
Q ss_pred HHHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCC-CCC-chhhHHHHHHHHHHccCCCcEEEecCCCC
Q 019244 188 WKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ-LDY-VPATIMALEEVVKATQGRIPVFLDGGVRR 265 (344)
Q Consensus 188 ~~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~-~~~-g~~~~~~l~~i~~~~~~~~~via~GGIr~ 265 (344)
.+.++++.. ++.+.+ .+.++++++.+.+.|+|+|.+++..+++ ..+ .+..++.+.++++.. ++||+++||| +
T Consensus 101 ~~~~~~~~~--~~~ig~-sv~t~~~~~~a~~~gaD~i~~~~~f~~~~~~g~~~~~~~~l~~~~~~~--~~pvia~GGI-~ 174 (221)
T 1yad_A 101 PKQIRARFP--HLHIGR-SVHSLEEAVQAEKEDADYVLFGHVFETDCKKGLEGRGVSLLSDIKQRI--SIPVIAIGGM-T 174 (221)
T ss_dssp HHHHHHHCT--TCEEEE-EECSHHHHHHHHHTTCSEEEEECCC----------CHHHHHHHHHHHC--CSCEEEESSC-C
T ss_pred HHHHHHHCC--CCEEEE-EcCCHHHHHHHHhCCCCEEEECCccccCCCCCCCCCCHHHHHHHHHhC--CCCEEEECCC-C
Confidence 344444432 444443 3468999999999999999986532221 111 123466777776665 7999999999 9
Q ss_pred HHHHHHHHHcCCCEEEEchHHHH
Q 019244 266 GTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 266 g~dv~kalalGAd~V~ig~~~l~ 288 (344)
.+++.+++.+||++|.+|+.++.
T Consensus 175 ~~nv~~~~~~Ga~gv~vgs~i~~ 197 (221)
T 1yad_A 175 PDRLRDVKQAGADGIAVMSGIFS 197 (221)
T ss_dssp GGGHHHHHHTTCSEEEESHHHHT
T ss_pred HHHHHHHHHcCCCEEEEhHHhhC
Confidence 99999999999999999999874
|
| >3l5a_A NADH/flavin oxidoreductase/NADH oxidase; OLD yellow enzyme family, OYE-like FMN-binding domain, TIM B oxidoreductase; HET: PGE; 1.65A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.48 E-value=4.8e-07 Score=88.64 Aligned_cols=100 Identities=15% Similarity=0.198 Sum_probs=74.6
Q ss_pred HHHHHHHHHhc------CCcEEEEeec----------CHHH----HHHHHH-cCCcEEEEccCCCC-----CCCCchh-h
Q 019244 188 WKDVKWLQTIT------KLPILVKGVL----------TAED----ARIAVQ-AGAAGIIVSNHGAR-----QLDYVPA-T 240 (344)
Q Consensus 188 ~~~i~~i~~~~------~~PvivK~v~----------~~~~----a~~~~~-~G~d~I~v~~~gG~-----~~~~g~~-~ 240 (344)
.+.++.+|+.+ +.||.+|... +.++ ++.+.+ +|+|+|.|++.+.. ....+.. .
T Consensus 225 ~evv~aVr~~v~~~~~~~f~v~vRis~~~~~~~~~G~~~ed~~~la~~L~~~~Gvd~I~vs~g~~~~~~~~~~~~g~~~~ 304 (419)
T 3l5a_A 225 LEVMRAVQEVIDKEAPDNFILGFRATPEETRGSDLGYTIDEFNQLIDWVMDVSNIQYLAIASWGRHIYQNTSRTPGDHFG 304 (419)
T ss_dssp HHHHHHHHHHHHHHCCTTCEEEEEECSCEEETTEEEECHHHHHHHHHHHHHHSCCCCEEECCTTCCGGGCBCCCSSTTTT
T ss_pred HHHHHHHHHHHhhhcCCCeeEEEecccccccCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeeCCccccccccCCCCcccc
Confidence 45688888877 5799999752 3433 677888 99999999864320 0111211 2
Q ss_pred HHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 241 IMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 241 ~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
...+..+++.+.+++|||+.|||++++++.++|+. ||+|++||+++.
T Consensus 305 ~~~a~~Ik~~v~~~iPVI~~GgI~t~e~Ae~~L~~-aDlVaiGR~~Ia 351 (419)
T 3l5a_A 305 RPVNQIVYEHLAGRIPLIASGGINSPESALDALQH-ADMVGMSSPFVT 351 (419)
T ss_dssp SBHHHHHHHHHTTSSCEEECSSCCSHHHHHHHGGG-CSEEEESTHHHH
T ss_pred HHHHHHHHHHcCCCCeEEEECCCCCHHHHHHHHHh-CCcHHHHHHHHH
Confidence 34556677776557999999999999999999999 999999999975
|
| >2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.45 E-value=9.4e-07 Score=80.43 Aligned_cols=79 Identities=15% Similarity=0.169 Sum_probs=63.2
Q ss_pred ecCHHHHHHHHHcCCcEEEEccC-CCCCCCCchhhHHHHHHHHHHccCC-CcEEEecCCCCHHHHHHHHHcCCCEEEEch
Q 019244 207 VLTAEDARIAVQAGAAGIIVSNH-GARQLDYVPATIMALEEVVKATQGR-IPVFLDGGVRRGTDVFKALALGASGIFIGR 284 (344)
Q Consensus 207 v~~~~~a~~~~~~G~d~I~v~~~-gG~~~~~g~~~~~~l~~i~~~~~~~-~~via~GGIr~g~dv~kalalGAd~V~ig~ 284 (344)
..+++.++++.++|++.|.--+. -|+ ..|..+.+.|..+++.. .+ +|||++|||.+++|+.+++.||||+|++|+
T Consensus 132 ~~D~~~ak~l~~~G~~aVmPlg~pIGs--G~Gi~~~~~L~~i~~~~-~~~vPVI~~GGI~tpsDAa~AmeLGAdgVlVgS 208 (268)
T 2htm_A 132 GPDLVLAKRLAALGTATVMPLAAPIGS--GWGVRTRALLELFAREK-ASLPPVVVDAGLGLPSHAAEVMELGLDAVLVNT 208 (268)
T ss_dssp CSCHHHHHHHHHHTCSCBEEBSSSTTT--CCCSTTHHHHHHHHHTT-TTSSCBEEESCCCSHHHHHHHHHTTCCEEEESH
T ss_pred CCCHHHHHHHHhcCCCEEEecCccCcC--CcccCCHHHHHHHHHhc-CCCCeEEEeCCCCCHHHHHHHHHcCCCEEEECh
Confidence 57889999999999999965332 122 12455677788887622 26 999999999999999999999999999999
Q ss_pred HHHH
Q 019244 285 PVVY 288 (344)
Q Consensus 285 ~~l~ 288 (344)
.+..
T Consensus 209 AI~~ 212 (268)
T 2htm_A 209 AIAE 212 (268)
T ss_dssp HHHT
T ss_pred HHhC
Confidence 9874
|
| >3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=1.1e-06 Score=81.32 Aligned_cols=90 Identities=23% Similarity=0.289 Sum_probs=70.5
Q ss_pred HhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHc
Q 019244 196 TITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL 275 (344)
Q Consensus 196 ~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalal 275 (344)
+.+++.+++ .+.+.++++++.++|+|.|.+.|.-.+.+ .+.++.+.++.+.++.++|+++.|||.+++|+.+++.+
T Consensus 159 ~~lGl~~lv-ev~t~ee~~~A~~~Gad~IGv~~r~l~~~---~~dl~~~~~l~~~v~~~~pvVaegGI~t~edv~~l~~~ 234 (272)
T 3qja_A 159 ESLGMTALV-EVHTEQEADRALKAGAKVIGVNARDLMTL---DVDRDCFARIAPGLPSSVIRIAESGVRGTADLLAYAGA 234 (272)
T ss_dssp HHTTCEEEE-EESSHHHHHHHHHHTCSEEEEESBCTTTC---CBCTTHHHHHGGGSCTTSEEEEESCCCSHHHHHHHHHT
T ss_pred HHCCCcEEE-EcCCHHHHHHHHHCCCCEEEECCCccccc---ccCHHHHHHHHHhCcccCEEEEECCCCCHHHHHHHHHc
Confidence 345777765 56889999999999999999875322222 23345566666666557999999999999999999999
Q ss_pred CCCEEEEchHHHHH
Q 019244 276 GASGIFIGRPVVYS 289 (344)
Q Consensus 276 GAd~V~ig~~~l~~ 289 (344)
||++|.+|+.++.+
T Consensus 235 GadgvlVGsal~~a 248 (272)
T 3qja_A 235 GADAVLVGEGLVTS 248 (272)
T ss_dssp TCSEEEECHHHHTC
T ss_pred CCCEEEEcHHHhCC
Confidence 99999999999863
|
| >3aty_A Tcoye, prostaglandin F2A synthase; alpha/beta barrel, oxidoreductase, flavin mononucleotide; HET: FMN; 1.70A {Trypanosoma cruzi} PDB: 3atz_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=3.8e-06 Score=81.19 Aligned_cols=96 Identities=6% Similarity=-0.114 Sum_probs=72.9
Q ss_pred CcHHHHHHHHHhcC-CcEEEEeec-----------CH----HHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHH
Q 019244 186 LSWKDVKWLQTITK-LPILVKGVL-----------TA----EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVK 249 (344)
Q Consensus 186 ~~~~~i~~i~~~~~-~PvivK~v~-----------~~----~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~ 249 (344)
+..+.++.+|+.++ -||.+|... +. +.++.+.++|+|+|.+++.+-.. ...+. + +.++++
T Consensus 229 ~~~eiv~aVr~avg~~~v~vRis~~~~~~~~~~~~~~~~~~~la~~l~~~Gvd~i~v~~~~~~~--~~~~~-~-~~~ir~ 304 (379)
T 3aty_A 229 LIYDVTKSVCDAVGSDRVGLRISPLNGVHGMIDSNPEALTKHLCKKIEPLSLAYLHYLRGDMVN--QQIGD-V-VAWVRG 304 (379)
T ss_dssp HHHHHHHHHHHHHCGGGEEEEECTTCCGGGCCCSCHHHHHHHHHHHHGGGCCSEEEEECSCTTS--CCCCC-H-HHHHHT
T ss_pred HHHHHHHHHHHhcCCCeEEEEECcccccccCCCCCCHHHHHHHHHHHHHhCCCEEEEcCCCcCC--CCccH-H-HHHHHH
Confidence 45678999999885 489999763 12 33677889999999998632111 01122 4 666766
Q ss_pred HccCCCcEEEecCCCCHHHHHHHHHcC-CCEEEEchHHHH
Q 019244 250 ATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 288 (344)
Q Consensus 250 ~~~~~~~via~GGIr~g~dv~kalalG-Ad~V~ig~~~l~ 288 (344)
.+ ++|||+.||| +..++.++|+.| ||+|++||+++.
T Consensus 305 ~~--~iPvi~~G~i-t~~~a~~~l~~g~aD~V~igR~~l~ 341 (379)
T 3aty_A 305 SY--SGVKISNLRY-DFEEADQQIREGKVDAVAFGAKFIA 341 (379)
T ss_dssp TC--CSCEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHH
T ss_pred HC--CCcEEEECCC-CHHHHHHHHHcCCCeEEEecHHHHh
Confidence 65 7999999999 999999999998 999999999986
|
| >2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A | Back alignment and structure |
|---|
Probab=98.41 E-value=1.2e-06 Score=77.80 Aligned_cols=93 Identities=17% Similarity=0.111 Sum_probs=70.6
Q ss_pred CcHHHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCC
Q 019244 186 LSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 265 (344)
Q Consensus 186 ~~~~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~ 265 (344)
++.+.++..++ .++|++.. +.|++++.++.+.|+|+|.++. .. .-+| .+.|+.++..++ ++|+++.|||.
T Consensus 92 ~d~~v~~~~~~-~g~~~i~G-~~t~~e~~~A~~~Gad~v~~fp--a~-~~gG---~~~lk~l~~~~~-~ipvvaiGGI~- 161 (207)
T 2yw3_A 92 LLEEVAALAQA-RGVPYLPG-VLTPTEVERALALGLSALKFFP--AE-PFQG---VRVLRAYAEVFP-EVRFLPTGGIK- 161 (207)
T ss_dssp CCHHHHHHHHH-HTCCEEEE-ECSHHHHHHHHHTTCCEEEETT--TT-TTTH---HHHHHHHHHHCT-TCEEEEBSSCC-
T ss_pred CCHHHHHHHHH-hCCCEEec-CCCHHHHHHHHHCCCCEEEEec--Cc-cccC---HHHHHHHHhhCC-CCcEEEeCCCC-
Confidence 34444555554 68888875 8899999999999999999943 11 1012 345666666553 79999999997
Q ss_pred HHHHHHHHHcCCCEEEEchHHHH
Q 019244 266 GTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 266 g~dv~kalalGAd~V~ig~~~l~ 288 (344)
..++..++++||++|.+|+.++.
T Consensus 162 ~~n~~~~l~aGa~~vavgSai~~ 184 (207)
T 2yw3_A 162 EEHLPHYAALPNLLAVGGSWLLQ 184 (207)
T ss_dssp GGGHHHHHTCSSBSCEEESGGGS
T ss_pred HHHHHHHHhCCCcEEEEehhhhC
Confidence 79999999999999999998764
|
| >1vcv_A Probable deoxyribose-phosphate aldolase; DERA, hyperthermophIle, archaea, lyase; 2.00A {Pyrobaculum aerophilum} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=98.39 E-value=5.8e-07 Score=80.73 Aligned_cols=172 Identities=19% Similarity=0.076 Sum_probs=95.0
Q ss_pred CHHHHHHHHHHHHHcCCcEEEeccCCccccccHH-HHHh--hcCCCCcccccccccccccccccccchhhHHH--Hh---
Q 019244 108 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREA-DIKN--RFTLPPFLTLKNFQGLDLGKMDEANDSGLAAY--VA--- 179 (344)
Q Consensus 108 d~~~~~~~i~~a~~ag~~~l~~tvd~~~~g~r~~-~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~--- 179 (344)
..+.++++++++.+.|+.++++++.......+.- .++. ..+||.|.........+... ...+..|. +.
T Consensus 15 t~~~i~~l~~~A~~~~~~aVcv~p~~v~~a~~~l~gv~v~tvigFP~G~~~~~~k~~E~~~----i~~GAdEID~Vinig 90 (226)
T 1vcv_A 15 TVDEAVAGARKAEELGVAAYCVNPIYAPVVRPLLRKVKLCVVADFPFGALPTASRIALVSR----LAEVADEIDVVAPIG 90 (226)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEECGGGHHHHGGGCSSSEEEEEESTTTCCSCHHHHHHHHHH----HTTTCSEEEEECCHH
T ss_pred CHHHHHHHHHHHHHhCCCEEEECHHHHHHHHHHhCCCeEEEEeCCCCCCCchHHHHHHHHH----HHCCCCEEEEecchh
Confidence 4566777888888888888887765433222110 0111 12345443221111000000 00111110 00
Q ss_pred --hcCCCCCcHHHHHHHHHhcCCcEEEEee-----cCHHH----HHHHHHcCCcEEEEccCCCC------CCCCchhhHH
Q 019244 180 --GQIDRSLSWKDVKWLQTITKLPILVKGV-----LTAED----ARIAVQAGAAGIIVSNHGAR------QLDYVPATIM 242 (344)
Q Consensus 180 --~~~~~~~~~~~i~~i~~~~~~PvivK~v-----~~~~~----a~~~~~~G~d~I~v~~~gG~------~~~~g~~~~~ 242 (344)
..++-+...++|+.+++..+- ..+|.+ ++.++ ++.+.++|+|+|..|+.-+. ..+.+..+++
T Consensus 91 ~~~~g~~~~v~~ei~~v~~a~~~-~~lKvIlEt~~Lt~eei~~a~~ia~eaGADfVKTSTGf~~~~~~~~~~~~~gAt~~ 169 (226)
T 1vcv_A 91 LVKSRRWAEVRRDLISVVGAAGG-RVVKVITEEPYLRDEERYTLYDIIAEAGAHFIKSSTGFAEEAYAARQGNPVHSTPE 169 (226)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTTT-SEEEEECCGGGCCHHHHHHHHHHHHHHTCSEEECCCSCCCHHHHHHTTCCSSCCHH
T ss_pred hhcCCCHHHHHHHHHHHHHHHcC-CCceEEEeccCCCHHHHHHHHHHHHHcCCCEEEeCCCCCccccccccCCCCCCCHH
Confidence 011112234578888887642 356744 56554 46688999999999852110 0112233444
Q ss_pred ---HHHHHHHHccCCCcEEEecCCCCHHHHHHHHHc---CCC----EEEEch
Q 019244 243 ---ALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL---GAS----GIFIGR 284 (344)
Q Consensus 243 ---~l~~i~~~~~~~~~via~GGIr~g~dv~kalal---GAd----~V~ig~ 284 (344)
.+.+..+.++++++|.++||||+..|+.+.+.+ ||+ -++..+
T Consensus 170 dv~lm~~~i~~~g~~v~vKaaGGirt~~~al~~i~a~~~Ga~~~~fRiGtS~ 221 (226)
T 1vcv_A 170 RAAAIARYIKEKGYRLGVKMAGGIRTREQAKAIVDAIGWGEDPARVRLGTST 221 (226)
T ss_dssp HHHHHHHHHHHHTCCCEEEEESSCCSHHHHHHHHHHHCSCSCTTTEEEEESC
T ss_pred HHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHHHHCCCCcCCceEecCc
Confidence 444443336778999999999999999999999 999 776654
|
| >1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A | Back alignment and structure |
|---|
Probab=98.36 E-value=1.3e-05 Score=73.30 Aligned_cols=120 Identities=19% Similarity=0.219 Sum_probs=78.2
Q ss_pred HHHHHHHhcCCcEEEEee--cCHHHHHHHHHcCCcEEEEccCCC---CCCCCchhhHHHHHHHHHHccCCCcEEEecCCC
Q 019244 190 DVKWLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVSNHGA---RQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 264 (344)
Q Consensus 190 ~i~~i~~~~~~PvivK~v--~~~~~a~~~~~~G~d~I~v~~~gG---~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr 264 (344)
.++.+++ .++++++-.. .+.+.++.+.+.+.+++.+....| ......+...+.+.++++.. ++||++.|||+
T Consensus 135 ~~~~~~~-~g~~~i~~~a~~t~~e~~~~~~~~~~g~v~~~s~~G~tG~~~~~~~~~~~~i~~v~~~~--~~pI~vgGGI~ 211 (262)
T 1rd5_A 135 LWSEAKN-NNLELVLLTTPAIPEDRMKEITKASEGFVYLVSVNGVTGPRANVNPRVESLIQEVKKVT--NKPVAVGFGIS 211 (262)
T ss_dssp HHHHHHH-TTCEECEEECTTSCHHHHHHHHHHCCSCEEEECSSCCBCTTSCBCTHHHHHHHHHHHHC--SSCEEEESCCC
T ss_pred HHHHHHH-cCCceEEEECCCCCHHHHHHHHhcCCCeEEEecCCCCCCCCcCCCchHHHHHHHHHhhc--CCeEEEECCcC
Confidence 3455544 3666554443 345666777777776676543333 21122234556778887765 79999999999
Q ss_pred CHHHHHHHHHcCCCEEEEchHHHHHhhh-cChHHHHHHHHHHHHHHHHH
Q 019244 265 RGTDVFKALALGASGIFIGRPVVYSLAA-EGEKGVRRVLEMLREEFELA 312 (344)
Q Consensus 265 ~g~dv~kalalGAd~V~ig~~~l~~~~~-~G~~~v~~~l~~l~~el~~~ 312 (344)
+++++.+++.+|||.|.+|+.++..... ...+...+.+..+.++|+..
T Consensus 212 ~~e~~~~~~~~GAdgvvVGSai~~~~~~~~~~~~~~~~~~~~~~~l~~~ 260 (262)
T 1rd5_A 212 KPEHVKQIAQWGADGVIIGSAMVRQLGEAASPKQGLRRLEEYARGMKNA 260 (262)
T ss_dssp SHHHHHHHHHTTCSEEEECHHHHHHHHSSSSHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCEEEEChHHHhHHHhccChhHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999887532 12222233556666666543
|
| >2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein, pyridoxal phosphate, structural genomi NPPSFA; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.33 E-value=4.8e-06 Score=78.16 Aligned_cols=45 Identities=38% Similarity=0.626 Sum_probs=38.6
Q ss_pred HHHHHHHHHccCCCcE--EEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 242 MALEEVVKATQGRIPV--FLDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 242 ~~l~~i~~~~~~~~~v--ia~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
+.+.++.+.. ++|| ++.|||.|++|+.+++.+|||+|++|+.++.
T Consensus 230 ell~~i~~~~--~IPVV~VAeGGI~Tpeda~~~l~~GaDgV~VGsaI~~ 276 (330)
T 2yzr_A 230 EVLLEVKKLG--RLPVVNFAAGGVATPADAALMMQLGSDGVFVGSGIFK 276 (330)
T ss_dssp HHHHHHHHHT--SCSSEEEECSCCCSHHHHHHHHHTTCSCEEESHHHHT
T ss_pred HHHHHHHHhC--CCCeEEEEECCCCCHHHHHHHHHcCcCEEeeHHHHhc
Confidence 5566665544 6888 6999999999999999999999999999985
|
| >1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=98.32 E-value=3.6e-06 Score=75.70 Aligned_cols=74 Identities=22% Similarity=0.342 Sum_probs=60.0
Q ss_pred HHHHHHHHHcCCcEEEEccC--CCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHH
Q 019244 210 AEDARIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 287 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~~--gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l 287 (344)
.+.++.+.+.|+|.|.+.+. +|+. .+ +.++.+.++++.. ++||+++|||.+.+|+.+++.+||++|++|+.++
T Consensus 157 ~e~~~~~~~~G~d~i~~~~~~~~g~~--~~-~~~~~i~~l~~~~--~~pvia~GGi~~~~~~~~~~~~Ga~~v~vgsal~ 231 (253)
T 1h5y_A 157 VKWAKEVEELGAGEILLTSIDRDGTG--LG-YDVELIRRVADSV--RIPVIASGGAGRVEHFYEAAAAGADAVLAASLFH 231 (253)
T ss_dssp HHHHHHHHHHTCSEEEEEETTTTTTC--SC-CCHHHHHHHHHHC--SSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHH
T ss_pred HHHHHHHHhCCCCEEEEecccCCCCc--Cc-CCHHHHHHHHHhc--CCCEEEeCCCCCHHHHHHHHHcCCcHHHHHHHHH
Confidence 46688999999999998542 2221 12 3567778887765 7999999999999999999999999999999997
Q ss_pred H
Q 019244 288 Y 288 (344)
Q Consensus 288 ~ 288 (344)
.
T Consensus 232 ~ 232 (253)
T 1h5y_A 232 F 232 (253)
T ss_dssp T
T ss_pred c
Confidence 5
|
| >2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=2.2e-06 Score=77.36 Aligned_cols=74 Identities=20% Similarity=0.251 Sum_probs=60.0
Q ss_pred HHHHHHHHHcCCcEEEEccC--CCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHc---CCCEEEEch
Q 019244 210 AEDARIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL---GASGIFIGR 284 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~~--gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalal---GAd~V~ig~ 284 (344)
.+.++.+.++|++.|.+.+. +|. ..+ +.++.+.++++.+ ++||+++|||.+.+|+.+++.+ ||++|++|+
T Consensus 152 ~e~~~~~~~~G~~~i~~~~~~~~~~--~~g-~~~~~~~~l~~~~--~ipvia~GGI~~~~d~~~~~~~~~~Gad~v~vG~ 226 (244)
T 2y88_A 152 WDVLERLDSEGCSRFVVTDITKDGT--LGG-PNLDLLAGVADRT--DAPVIASGGVSSLDDLRAIATLTHRGVEGAIVGK 226 (244)
T ss_dssp HHHHHHHHHTTCCCEEEEETTTTTT--TSC-CCHHHHHHHHTTC--SSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECH
T ss_pred HHHHHHHHhCCCCEEEEEecCCccc--cCC-CCHHHHHHHHHhC--CCCEEEECCCCCHHHHHHHHhhccCCCCEEEEcH
Confidence 57789999999999988652 121 112 3677788877654 7999999999999999999998 999999999
Q ss_pred HHHH
Q 019244 285 PVVY 288 (344)
Q Consensus 285 ~~l~ 288 (344)
.++.
T Consensus 227 al~~ 230 (244)
T 2y88_A 227 ALYA 230 (244)
T ss_dssp HHHT
T ss_pred HHHC
Confidence 9875
|
| >1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=98.30 E-value=1.5e-06 Score=79.51 Aligned_cols=47 Identities=9% Similarity=0.100 Sum_probs=38.4
Q ss_pred HHHHHHHHHccC---CCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHH
Q 019244 242 MALEEVVKATQG---RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 289 (344)
Q Consensus 242 ~~l~~i~~~~~~---~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~ 289 (344)
+.+.++.+.++. ++|+++.|||.|.+|+.++.. ||++|.+|+.++.+
T Consensus 193 ~~~~~L~~~i~~~~~~~~vIAegGI~s~~dv~~l~~-Ga~gvlVGsAl~~~ 242 (254)
T 1vc4_A 193 ETAPRLGRLARKRGFGGVLVAESGYSRKEELKALEG-LFDAVLIGTSLMRA 242 (254)
T ss_dssp THHHHHHHHHHHTTCCSEEEEESCCCSHHHHHTTTT-TCSEEEECHHHHTS
T ss_pred HHHHHHHHhCccccCCCeEEEEcCCCCHHHHHHHHc-CCCEEEEeHHHcCC
Confidence 344445444433 689999999999999999999 99999999999863
|
| >1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=98.29 E-value=3.1e-06 Score=76.68 Aligned_cols=77 Identities=21% Similarity=0.255 Sum_probs=61.8
Q ss_pred HHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHH
Q 019244 210 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 289 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~ 289 (344)
.+.++.+.+.|++.|.+.+..-.+...| +.++.+.++++.+ ++||+++|||++.+|+.+++.+||++|++|+.++.+
T Consensus 155 ~e~~~~~~~~G~~~i~~~~~~~~g~~~g-~~~~~i~~l~~~~--~ipvia~GGI~~~~d~~~~~~~Gadgv~vgsal~~~ 231 (252)
T 1ka9_F 155 VEWAVKGVELGAGEILLTSMDRDGTKEG-YDLRLTRMVAEAV--GVPVIASGGAGRMEHFLEAFQAGAEAALAASVFHFG 231 (252)
T ss_dssp HHHHHHHHHHTCCEEEEEETTTTTTCSC-CCHHHHHHHHHHC--SSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTT
T ss_pred HHHHHHHHHcCCCEEEEecccCCCCcCC-CCHHHHHHHHHHc--CCCEEEeCCCCCHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 5778999999999998863221111123 3578888888876 799999999999999999999999999999999853
|
| >2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=5e-06 Score=74.04 Aligned_cols=95 Identities=16% Similarity=0.170 Sum_probs=67.9
Q ss_pred HHHHHHhcCCcEEEEe-ecCHHHHHHHHHcCCcEEEEcc--CCCCCCC-CchhhHHHHHHHHHHccCCCcEEEecCCCCH
Q 019244 191 VKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSN--HGARQLD-YVPATIMALEEVVKATQGRIPVFLDGGVRRG 266 (344)
Q Consensus 191 i~~i~~~~~~PvivK~-v~~~~~a~~~~~~G~d~I~v~~--~gG~~~~-~g~~~~~~l~~i~~~~~~~~~via~GGIr~g 266 (344)
+..+++..+. ++++. +.+++++..+.+.|+|+|.++. ..+.... ..+..++.+.++++... ++||+++|||. .
T Consensus 107 ~~~~~~~~g~-~~~~~s~~t~~e~~~a~~~g~d~v~~~~v~~t~~~~~~~~~~~~~~l~~~~~~~~-~~pvia~GGI~-~ 183 (227)
T 2tps_A 107 AKEVRAAIGD-MILGVSAHTMSEVKQAEEDGADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQGI-SIPIVGIGGIT-I 183 (227)
T ss_dssp HHHHHHHHTT-SEEEEEECSHHHHHHHHHHTCSEEEECCSSCCCSSSSCCCCCTTHHHHHHHHTTC-CCCEEEESSCC-T
T ss_pred HHHHHHhcCC-cEEEEecCCHHHHHHHHhCCCCEEEECCCcCCCCCCCCCCccCHHHHHHHHHhCC-CCCEEEEcCCC-H
Confidence 4555555554 44443 3678889999999999999742 1111111 12234566777766552 49999999999 9
Q ss_pred HHHHHHHHcCCCEEEEchHHHH
Q 019244 267 TDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 267 ~dv~kalalGAd~V~ig~~~l~ 288 (344)
+++.+++.+||++|.+|+.++.
T Consensus 184 ~nv~~~~~~Ga~gv~vgs~i~~ 205 (227)
T 2tps_A 184 DNAAPVIQAGADGVSMISAISQ 205 (227)
T ss_dssp TTSHHHHHTTCSEEEESHHHHT
T ss_pred HHHHHHHHcCCCEEEEhHHhhc
Confidence 9999999999999999999874
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=4.5e-06 Score=87.23 Aligned_cols=101 Identities=15% Similarity=0.082 Sum_probs=73.7
Q ss_pred CCcHHHHHHHHHhc--CCcEEEEeec---------C-HHH----HHHHHHcCCcEEEEccCCC-----C---CCCCchh-
Q 019244 185 SLSWKDVKWLQTIT--KLPILVKGVL---------T-AED----ARIAVQAGAAGIIVSNHGA-----R---QLDYVPA- 239 (344)
Q Consensus 185 ~~~~~~i~~i~~~~--~~PvivK~v~---------~-~~~----a~~~~~~G~d~I~v~~~gG-----~---~~~~g~~- 239 (344)
.|..+.++.+|+.+ +.||++|... + .++ ++.+. .|+|.+.+++.+. . .......
T Consensus 200 r~~~eiv~avr~~vg~~~pv~vrls~~~~~~~~G~~~~~~~~~~~~~l~-~~~d~~~v~~g~~~~~~~~~~~~~~~~~~~ 278 (729)
T 1o94_A 200 RFWLETLEKVKHAVGSDCAIATRFGVDTVYGPGQIEAEVDGQKFVEMAD-SLVDMWDITIGDIAEWGEDAGPSRFYQQGH 278 (729)
T ss_dssp HHHHHHHHHHHHHHTTTSEEEEEEEEECSSCTTSCCTTTHHHHHHHHHG-GGCSEEEEEECCSTTGGGTSCCTTTCCTTT
T ss_pred HHHHHHHHHHHHHhCCCceEEEEEccccCcCCCCCCchHHHHHHHHHHH-hhcCEEEEeeecccccccccCCccccCccc
Confidence 45667899999999 7999999852 1 222 44444 4899999975321 0 0001111
Q ss_pred hHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcC-CCEEEEchHHHH
Q 019244 240 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 288 (344)
Q Consensus 240 ~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalG-Ad~V~ig~~~l~ 288 (344)
.+....++++.+ ++|||+.|||.++.++.++|+.| ||+|++||+++.
T Consensus 279 ~~~~~~~i~~~~--~~pvi~~G~i~~~~~a~~~l~~g~aD~V~~gR~~l~ 326 (729)
T 1o94_A 279 TIPWVKLVKQVS--KKPVLGVGRYTDPEKMIEIVTKGYADIIGCARPSIA 326 (729)
T ss_dssp THHHHHHHHTTC--SSCEECCSCCCCHHHHHHHHHTTSCSBEEESHHHHH
T ss_pred cHHHHHHHHHHC--CCEEEEeCCCCCHHHHHHHHHCCCCCEEEeCchhhc
Confidence 355666777665 79999999999999999999998 999999999975
|
| >1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=98.26 E-value=8.5e-06 Score=73.14 Aligned_cols=163 Identities=18% Similarity=0.201 Sum_probs=97.0
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEeccCCccccccHHHHHhhcCCCCcc-cccccccccccccccccchhhHHHHhhcCCCC
Q 019244 107 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFL-TLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 185 (344)
Q Consensus 107 ~d~~~~~~~i~~a~~ag~~~l~~tvd~~~~g~r~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (344)
.+.+...++++++.++|.+.+.++...+..-...+.++..+ |.-. ....+ +..+........+....+. +.
T Consensus 26 ~~~~~~~~~~~al~~gGv~~iel~~k~~~~~~~i~~l~~~~--~~l~vgaGtv--l~~d~~~~A~~aGAd~v~~----p~ 97 (224)
T 1vhc_A 26 DNADDILPLADTLAKNGLSVAEITFRSEAAADAIRLLRANR--PDFLIAAGTV--LTAEQVVLAKSSGADFVVT----PG 97 (224)
T ss_dssp SSGGGHHHHHHHHHHTTCCEEEEETTSTTHHHHHHHHHHHC--TTCEEEEESC--CSHHHHHHHHHHTCSEEEC----SS
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeccCchHHHHHHHHHHhC--cCcEEeeCcE--eeHHHHHHHHHCCCCEEEE----CC
Confidence 35555566777777888888888766553211122233332 2100 00010 0000000000001111111 23
Q ss_pred CcHHHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCC
Q 019244 186 LSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 265 (344)
Q Consensus 186 ~~~~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~ 265 (344)
++.+.++..++ .+.|+++. +.|++++.++.+.|+|+|.++. .. .. ...+.|.+++..++ ++|+++.|||.
T Consensus 98 ~d~~v~~~ar~-~g~~~i~G-v~t~~e~~~A~~~Gad~vk~Fp--a~--~~--gG~~~lk~l~~~~~-~ipvvaiGGI~- 167 (224)
T 1vhc_A 98 LNPKIVKLCQD-LNFPITPG-VNNPMAIEIALEMGISAVKFFP--AE--AS--GGVKMIKALLGPYA-QLQIMPTGGIG- 167 (224)
T ss_dssp CCHHHHHHHHH-TTCCEECE-ECSHHHHHHHHHTTCCEEEETT--TT--TT--THHHHHHHHHTTTT-TCEEEEBSSCC-
T ss_pred CCHHHHHHHHH-hCCCEEec-cCCHHHHHHHHHCCCCEEEEee--Cc--cc--cCHHHHHHHHhhCC-CCeEEEECCcC-
Confidence 44555777777 78888874 8999999999999999999943 11 01 12456666665553 79999999995
Q ss_pred HHHHHHHHHc-CCCEEEEchHHHH
Q 019244 266 GTDVFKALAL-GASGIFIGRPVVY 288 (344)
Q Consensus 266 g~dv~kalal-GAd~V~ig~~~l~ 288 (344)
..++...+++ |+++|. |+.++.
T Consensus 168 ~~N~~~~l~agga~~v~-gS~i~~ 190 (224)
T 1vhc_A 168 LHNIRDYLAIPNIVACG-GSWFVE 190 (224)
T ss_dssp TTTHHHHHTSTTBCCEE-ECGGGC
T ss_pred HHHHHHHHhcCCCEEEE-EchhcC
Confidence 6899999999 999999 887764
|
| >3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=98.26 E-value=2.4e-06 Score=75.35 Aligned_cols=93 Identities=17% Similarity=0.231 Sum_probs=67.1
Q ss_pred HHHHHHhcCCcEEEEe--ecCH-HHHHHHHHcCCcEEEEccC-CCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCH
Q 019244 191 VKWLQTITKLPILVKG--VLTA-EDARIAVQAGAAGIIVSNH-GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 266 (344)
Q Consensus 191 i~~i~~~~~~PvivK~--v~~~-~~a~~~~~~G~d~I~v~~~-gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g 266 (344)
++.+++ .++++++-. ..++ +.++.+.+.|+|+|.+... .|.. .++...+.+.++++... ++||+++|||+ .
T Consensus 96 ~~~~~~-~g~~~~v~~~~~~t~~~~~~~~~~~g~d~i~v~~g~~g~~--~~~~~~~~i~~l~~~~~-~~~i~~~gGI~-~ 170 (211)
T 3f4w_A 96 IRAAKE-AGKQVVVDMICVDDLPARVRLLEEAGADMLAVHTGTDQQA--AGRKPIDDLITMLKVRR-KARIAVAGGIS-S 170 (211)
T ss_dssp HHHHHH-HTCEEEEECTTCSSHHHHHHHHHHHTCCEEEEECCHHHHH--TTCCSHHHHHHHHHHCS-SCEEEEESSCC-T
T ss_pred HHHHHH-cCCeEEEEecCCCCHHHHHHHHHHcCCCEEEEcCCCcccc--cCCCCHHHHHHHHHHcC-CCcEEEECCCC-H
Confidence 444444 477776532 2343 6689999999999987521 1111 12235677778877653 69999999996 9
Q ss_pred HHHHHHHHcCCCEEEEchHHHH
Q 019244 267 TDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 267 ~dv~kalalGAd~V~ig~~~l~ 288 (344)
+++.+++.+|||.|.+||+++.
T Consensus 171 ~~~~~~~~~Gad~vvvGsai~~ 192 (211)
T 3f4w_A 171 QTVKDYALLGPDVVIVGSAITH 192 (211)
T ss_dssp TTHHHHHTTCCSEEEECHHHHT
T ss_pred HHHHHHHHcCCCEEEECHHHcC
Confidence 9999999999999999999875
|
| >1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A | Back alignment and structure |
|---|
Probab=98.25 E-value=3.2e-06 Score=76.37 Aligned_cols=74 Identities=24% Similarity=0.314 Sum_probs=59.1
Q ss_pred HHHHHHHHHcCCcEEEEccC--CCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHc---CCCEEEEch
Q 019244 210 AEDARIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL---GASGIFIGR 284 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~~--gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalal---GAd~V~ig~ 284 (344)
.+.++.+.+.|++.|.+.+. +|+. .+ ..++.+.++++.+ ++||+++|||++.+|+.+++++ ||++|++|+
T Consensus 149 ~e~~~~~~~~G~~~i~~~~~~~~~~~--~g-~~~~~~~~i~~~~--~ipvia~GGI~~~~d~~~~~~~~~~Gadgv~vG~ 223 (244)
T 1vzw_A 149 YETLDRLNKEGCARYVVTDIAKDGTL--QG-PNLELLKNVCAAT--DRPVVASGGVSSLDDLRAIAGLVPAGVEGAIVGK 223 (244)
T ss_dssp HHHHHHHHHTTCCCEEEEEC---------C-CCHHHHHHHHHTC--SSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECH
T ss_pred HHHHHHHHhCCCCEEEEeccCccccc--CC-CCHHHHHHHHHhc--CCCEEEECCCCCHHHHHHHHhhccCCCceeeeeH
Confidence 45579999999999988652 2211 12 3677888887765 7999999999999999999999 999999999
Q ss_pred HHHH
Q 019244 285 PVVY 288 (344)
Q Consensus 285 ~~l~ 288 (344)
.++.
T Consensus 224 al~~ 227 (244)
T 1vzw_A 224 ALYA 227 (244)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 9875
|
| >3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.25 E-value=5.5e-06 Score=75.27 Aligned_cols=81 Identities=15% Similarity=0.129 Sum_probs=60.5
Q ss_pred ecCHHHHHHHHHcCCcEEEEccCCCCC--CCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEch
Q 019244 207 VLTAEDARIAVQAGAAGIIVSNHGARQ--LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 284 (344)
Q Consensus 207 v~~~~~a~~~~~~G~d~I~v~~~gG~~--~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~ 284 (344)
+-++++++.+.+.|+|+|.++.-..+. .+..+..++.+.++.+....++||++.||| +.+++.+++.+||++|.+++
T Consensus 142 ~ht~~Ea~~A~~~GaDyI~vgpvf~T~tK~~~~~~gl~~l~~~~~~~~~~iPvvAiGGI-~~~ni~~~~~aGa~gvav~s 220 (243)
T 3o63_A 142 THDPDQVAAAAAGDADYFCVGPCWPTPTKPGRAAPGLGLVRVAAELGGDDKPWFAIGGI-NAQRLPAVLDAGARRIVVVR 220 (243)
T ss_dssp ECSHHHHHHHHHSSCSEEEECCSSCCCC-----CCCHHHHHHHHTC---CCCEEEESSC-CTTTHHHHHHTTCCCEEESH
T ss_pred CCCHHHHHHHhhCCCCEEEEcCccCCCCCCCcchhhHHHHHHHHHhccCCCCEEEecCC-CHHHHHHHHHcCCCEEEEeH
Confidence 478999999999999999997632221 111123456677665432237999999999 89999999999999999999
Q ss_pred HHHH
Q 019244 285 PVVY 288 (344)
Q Consensus 285 ~~l~ 288 (344)
.++.
T Consensus 221 ai~~ 224 (243)
T 3o63_A 221 AITS 224 (243)
T ss_dssp HHHT
T ss_pred HHhC
Confidence 9875
|
| >1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A | Back alignment and structure |
|---|
Probab=98.24 E-value=3.6e-06 Score=76.33 Aligned_cols=74 Identities=15% Similarity=0.197 Sum_probs=59.7
Q ss_pred HHHHHHHHHcCCcEEEEccC--CCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHH
Q 019244 210 AEDARIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 287 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~~--gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l 287 (344)
.+.++.+.+.|++.|.+.+. .|+ ..+ +.++.+.++++.+ ++||+++|||++.+|+.+++.+||++|++|+.++
T Consensus 154 ~e~~~~~~~~G~~~i~~~~~~~~g~--~~g-~~~~~~~~l~~~~--~ipvia~GGI~~~~d~~~~~~~Gadgv~vGsal~ 228 (253)
T 1thf_D 154 RDWVVEVEKRGAGEILLTSIDRDGT--KSG-YDTEMIRFVRPLT--TLPIIASGGAGKMEHFLEAFLAGADAALAASVFH 228 (253)
T ss_dssp HHHHHHHHHTTCSEEEEEETTTTTS--CSC-CCHHHHHHHGGGC--CSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHH
T ss_pred HHHHHHHHHCCCCEEEEEeccCCCC--CCC-CCHHHHHHHHHhc--CCCEEEECCCCCHHHHHHHHHcCChHHHHHHHHH
Confidence 46689999999999988532 222 122 3577787777655 7999999999999999999999999999999987
Q ss_pred H
Q 019244 288 Y 288 (344)
Q Consensus 288 ~ 288 (344)
.
T Consensus 229 ~ 229 (253)
T 1thf_D 229 F 229 (253)
T ss_dssp T
T ss_pred c
Confidence 5
|
| >3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A | Back alignment and structure |
|---|
Probab=98.24 E-value=4.7e-06 Score=76.25 Aligned_cols=95 Identities=24% Similarity=0.436 Sum_probs=72.6
Q ss_pred HHHHHH-hcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCC---------------------C-CC---------ch
Q 019244 191 VKWLQT-ITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ---------------------L-DY---------VP 238 (344)
Q Consensus 191 i~~i~~-~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~---------------------~-~~---------g~ 238 (344)
+..|.+ .+++|+++ ++.+.++|.++++.|+|.|-..+..|+. + +. -.
T Consensus 106 ~~~I~k~~f~vpfv~-~~~~l~EAlrri~eGA~mIrTtge~gtg~v~~av~h~r~~~~~i~~l~g~~t~~el~~~a~~~~ 184 (291)
T 3o07_A 106 THHIEKDKFKVPFVC-GAKDLGEALRRINEGAAMIRTKGEAGTGDVSEAVKHIRRITEEIKACQQLKSEDDIAKVAEEMR 184 (291)
T ss_dssp SCCCCGGGCSSCEEE-EESSHHHHHHHHHHTCSEEEECCCTTSCCTHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHT
T ss_pred HHHhhhhcCCCcEEe-eCCCHHHHHHHHHCCCCEEEecCcCCCccHHHHHHHHHHHHHHHHHHHcCCCHHHhhhcccccC
Confidence 333444 35788775 5789999999999999999887544431 2 10 02
Q ss_pred hhHHHHHHHHHHccCCCcE--EEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 239 ATIMALEEVVKATQGRIPV--FLDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 239 ~~~~~l~~i~~~~~~~~~v--ia~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
++++.+.++.+.. ++|| |+.|||.|+.|+.+++.+|||+|++||.++.
T Consensus 185 ad~elI~~Ike~~--~IPVV~IAnGGI~TpedA~~~le~GaDGVmVGrAI~~ 234 (291)
T 3o07_A 185 VPVSLLKDVLEKG--KLPVVNFAAGGVATPADAALLMQLGCDGVFVGSGIFK 234 (291)
T ss_dssp SCHHHHHHHHHHT--SCSSCEEBCSSCCSHHHHHHHHHTTCSCEEECGGGGG
T ss_pred CCHHHHHHHHHcc--CCCEEEecCCCCCCHHHHHHHHHhCCCEEEEchHHhC
Confidence 4567788887765 6888 5689999999999999999999999998875
|
| >1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=1e-05 Score=72.06 Aligned_cols=89 Identities=18% Similarity=0.197 Sum_probs=67.3
Q ss_pred HHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHH
Q 019244 190 DVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDV 269 (344)
Q Consensus 190 ~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv 269 (344)
.+.+.++..+.|++. ++.|++++.++.+.|+|+|.++. .. .. ...+.|..++..++ ++|+++.|||. .+++
T Consensus 100 ~v~~~~~~~g~~~i~-G~~t~~e~~~A~~~Gad~v~~Fp--a~--~~--gG~~~lk~i~~~~~-~ipvvaiGGI~-~~n~ 170 (214)
T 1wbh_A 100 PLLKAATEGTIPLIP-GISTVSELMLGMDYGLKEFKFFP--AE--AN--GGVKALQAIAGPFS-QVRFCPTGGIS-PANY 170 (214)
T ss_dssp HHHHHHHHSSSCEEE-EESSHHHHHHHHHTTCCEEEETT--TT--TT--THHHHHHHHHTTCT-TCEEEEBSSCC-TTTH
T ss_pred HHHHHHHHhCCCEEE-ecCCHHHHHHHHHCCCCEEEEec--Cc--cc--cCHHHHHHHhhhCC-CCeEEEECCCC-HHHH
Confidence 344445557888887 48999999999999999999943 11 01 12456666665553 79999999995 6899
Q ss_pred HHHHHc-CCCEEEEchHHHH
Q 019244 270 FKALAL-GASGIFIGRPVVY 288 (344)
Q Consensus 270 ~kalal-GAd~V~ig~~~l~ 288 (344)
...+++ |+++|. |+.++.
T Consensus 171 ~~~l~agg~~~v~-gS~i~~ 189 (214)
T 1wbh_A 171 RDYLALKSVLCIG-GSWLVP 189 (214)
T ss_dssp HHHHTSTTBSCEE-EGGGSC
T ss_pred HHHHhcCCCeEEE-eccccC
Confidence 999999 999999 887764
|
| >4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ... | Back alignment and structure |
|---|
Probab=98.23 E-value=1.4e-05 Score=72.62 Aligned_cols=103 Identities=12% Similarity=0.232 Sum_probs=76.9
Q ss_pred cHHHHHHHHHhcCCcEEEEee-cCHHHHHHHHHcCCcEEEEccC--C--------------C------------------
Q 019244 187 SWKDVKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSNH--G--------------A------------------ 231 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v-~~~~~a~~~~~~G~d~I~v~~~--g--------------G------------------ 231 (344)
+.++++.+|+.+++||+-|.- .++.+...+..+|||+|-+.-. . |
T Consensus 92 s~~~L~~vr~~v~lPvLrKDFiid~yQI~eAr~~GADaILLI~a~L~~~~l~~l~~~A~~lGl~~LvEVh~~~El~rAl~ 171 (258)
T 4a29_A 92 SYETLRKIASSVSIPILMSDFIVKESQIDDAYNLGADTVLLIVKILTERELESLLEYARSYGMEPLILINDENDLDIALR 171 (258)
T ss_dssp CHHHHHHHHTTCSSCEEEESCCCSHHHHHHHHHHTCSEEEEEGGGSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCCEeeccccccHHHHHHHHHcCCCeeehHHhhcCHHHHHHHHHHHHHHhHHHHHhcchHHHHHHHhc
Confidence 568888999888999998874 6777778888888888866321 0 0
Q ss_pred ----------CCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHH
Q 019244 232 ----------RQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 289 (344)
Q Consensus 232 ----------~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~ 289 (344)
|.+..-...++...++...++.++.+++.+||++..|+.++...|+++|.||..||..
T Consensus 172 ~~a~iIGINNRnL~tf~vdl~~t~~L~~~ip~~~~~VsESGI~t~~dv~~l~~~G~~a~LVGealmr~ 239 (258)
T 4a29_A 172 IGARFIGIMSRDFETGEINKENQRKLISMIPSNVVKVAKLGISERNEIEELRKLGVNAFLISSSLMRN 239 (258)
T ss_dssp TTCSEEEECSBCTTTCCBCHHHHHHHHTTSCTTSEEEEEESSCCHHHHHHHHHTTCCEEEECHHHHHC
T ss_pred CCCcEEEEeCCCccccccCHHHHHHHHhhCCCCCEEEEcCCCCCHHHHHHHHHCCCCEEEECHHHhCC
Confidence 0111111234445556666667889999999999999999999999999999999974
|
| >1ub3_A Aldolase protein; schiff base, deoxyribose phosphate, carbinolamine, structural genomics, riken structural genomics/proteomics initiative; HET: HPD; 1.40A {Thermus thermophilus} SCOP: c.1.10.1 PDB: 1j2w_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=1.3e-05 Score=71.67 Aligned_cols=93 Identities=23% Similarity=0.275 Sum_probs=67.8
Q ss_pred cHHHHHHHHHhcCCcEEEEee-----cCHHH----HHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcE
Q 019244 187 SWKDVKWLQTITKLPILVKGV-----LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 257 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v-----~~~~~----a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~v 257 (344)
..++|..+++..+-+ .+|.+ ++.+. ++.+.++|+|+|..|..-+ .+..+.+.+..+++.++.++||
T Consensus 105 v~~ei~~v~~a~~~~-~lkvIlet~~l~~e~i~~a~~ia~eaGADfVKTsTGf~----~~gat~~dv~~m~~~vg~~v~V 179 (220)
T 1ub3_A 105 LEAEVRAVREAVPQA-VLKVILETGYFSPEEIARLAEAAIRGGADFLKTSTGFG----PRGASLEDVALLVRVAQGRAQV 179 (220)
T ss_dssp HHHHHHHHHHHSTTS-EEEEECCGGGSCHHHHHHHHHHHHHHTCSEEECCCSSS----SCCCCHHHHHHHHHHHTTSSEE
T ss_pred HHHHHHHHHHHHcCC-CceEEEecCCCCHHHHHHHHHHHHHhCCCEEEeCCCCC----CCCCCHHHHHHHHHhhCCCCeE
Confidence 345788888877544 66754 46554 5678899999999985211 1224556565566656668999
Q ss_pred EEecCCCCHHHHHHHHHcCCCEEEEch
Q 019244 258 FLDGGVRRGTDVFKALALGASGIFIGR 284 (344)
Q Consensus 258 ia~GGIr~g~dv~kalalGAd~V~ig~ 284 (344)
.++||||+..|+++.+.+||+-++..+
T Consensus 180 kaaGGirt~~~al~~i~aGa~RiG~S~ 206 (220)
T 1ub3_A 180 KAAGGIRDRETALRMLKAGASRLGTSS 206 (220)
T ss_dssp EEESSCCSHHHHHHHHHTTCSEEEETT
T ss_pred EEECCCCCHHHHHHHHHCCCcccchhH
Confidence 999999999999999999999666554
|
| >1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A | Back alignment and structure |
|---|
Probab=98.23 E-value=2.5e-06 Score=77.09 Aligned_cols=78 Identities=13% Similarity=0.195 Sum_probs=61.9
Q ss_pred CH-HHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHc-----C-CCEEE
Q 019244 209 TA-EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL-----G-ASGIF 281 (344)
Q Consensus 209 ~~-~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalal-----G-Ad~V~ 281 (344)
+. +.++.+.++|++.|.+.+....+...+ +.++.+.++++.+ ++|||++|||++.+|+.+++.+ | |++|+
T Consensus 145 ~~~e~~~~~~~~G~~~i~~t~~~~~g~~~g-~~~~~i~~l~~~~--~iPvia~GGI~~~~d~~~~~~~~~~~~G~adgv~ 221 (241)
T 1qo2_A 145 DPVSLLKRLKEYGLEEIVHTEIEKDGTLQE-HDFSLTKKIAIEA--EVKVLAAGGISSENSLKTAQKVHTETNGLLKGVI 221 (241)
T ss_dssp CHHHHHHHHHTTTCCEEEEEETTHHHHTCC-CCHHHHHHHHHHH--TCEEEEESSCCSHHHHHHHHHHHHHTTTSEEEEE
T ss_pred CHHHHHHHHHhCCCCEEEEEeecccccCCc-CCHHHHHHHHHhc--CCcEEEECCCCCHHHHHHHHhcccccCCeEeEEE
Confidence 44 447889999999999865321111122 3578888888877 7999999999999999999998 9 99999
Q ss_pred EchHHHHH
Q 019244 282 IGRPVVYS 289 (344)
Q Consensus 282 ig~~~l~~ 289 (344)
+|+.++.+
T Consensus 222 vgsal~~~ 229 (241)
T 1qo2_A 222 VGRAFLEG 229 (241)
T ss_dssp ECHHHHTT
T ss_pred eeHHHHcC
Confidence 99999863
|
| >3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=1.5e-06 Score=102.11 Aligned_cols=199 Identities=16% Similarity=0.139 Sum_probs=111.8
Q ss_pred eecccccccceeecccccccccCChhhHHHHHHHHHcCCccc-----cCCHHHHHHHHHHHHHcC--CcEEEeccC--Cc
Q 019244 64 TVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMV-----YKDRNVVAQLVRRAERAG--FKAIALTVD--TP 134 (344)
Q Consensus 64 ~l~g~~l~~Pi~iapm~~~~~~~~~~~~~lA~aA~~~g~~~~-----~~d~~~~~~~i~~a~~ag--~~~l~~tvd--~~ 134 (344)
+++| ..||+.+||+++. +.+ .||.|..++|.... +.+++...+.++++++.- -..+.+++- .|
T Consensus 423 ~~lg---~~PIi~a~M~~~~-s~~----~LaaAVs~AGglG~l~~~g~~~~~~l~~~i~~~r~~~~~~~p~~vNl~~~~p 494 (3089)
T 3zen_D 423 RLTG---RSPILLAGMTPTT-VDA----KIVAAAANAGHWAELAGGGQVTEQIFNDRIAELETLLEPGRAIQFNTLFLDP 494 (3089)
T ss_dssp HHHS---SCSEEECCCHHHH-TSH----HHHHHHHHTTCEEEECSTTCCSHHHHHHHHHHHHHHSCTTCCCEEEEECSCH
T ss_pred hhcC---CCCEEeCCCcCCc-CCH----HHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHHhcCCCCceeechhhcCh
Confidence 3556 6799999997543 223 59999999998662 347888888888877632 111222221 11
Q ss_pred cccccHHHHHhhcCCCCcccccccccccccccccccchhhHHHHhhcCCCCC--cHHHHHHHHHhcCCcEEEEeecCHHH
Q 019244 135 RLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL--SWKDVKWLQTITKLPILVKGVLTAED 212 (344)
Q Consensus 135 ~~g~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~i~~~~~~PvivK~v~~~~~ 212 (344)
.+. ....+. ...+..+...... ...++...+.++. .-+.++.+++. ++.++.=.+.+.++
T Consensus 495 ~~~----~~~~g~-------~~~~~~~~~~g~~------vdgv~~~aG~P~~ee~~~~i~~l~~~-Gi~~i~~~~~t~~~ 556 (3089)
T 3zen_D 495 YLW----KLQVGG-------KRLVQRARQSGAP------IDGLVVSAGIPDLEEAVDIIDELNEV-GISHVVFKPGTVEQ 556 (3089)
T ss_dssp HHH----HHHHHH-------HHHHHHHHHTTCS------CCEEEEESSCCCHHHHHHHHTSTTHH-HHCSEEECCCSHHH
T ss_pred hhh----hhccCH-------HHHHHHHHHcCCC------ceEEEEeCCCCchhHhHHHHHHHHHc-CCEEEEEeCCCHHH
Confidence 110 000000 0000000000000 0000011111111 01234444442 55555423678899
Q ss_pred HHHHHHcCCc------EEEEccC--CCCCCCCchhhHHHHHHHHHHcc--CCCcEEEecCCCCHHHHHHHH---------
Q 019244 213 ARIAVQAGAA------GIIVSNH--GARQLDYVPATIMALEEVVKATQ--GRIPVFLDGGVRRGTDVFKAL--------- 273 (344)
Q Consensus 213 a~~~~~~G~d------~I~v~~~--gG~~~~~g~~~~~~l~~i~~~~~--~~~~via~GGIr~g~dv~kal--------- 273 (344)
++++.+.|+| +|++.|. ||+... ......+.+....++ .++||++.|||.++.++..++
T Consensus 557 a~~~~~i~~d~~~~~y~vv~~G~eaGGH~g~--~~~~~ll~~~~~~ir~~~~iPViaaGGI~d~~~vaaal~g~ws~~~~ 634 (3089)
T 3zen_D 557 IRSVIRIAAEVPTKPVIVHIEGGRAGGHHSW--EDLDDLLLATYSELRSRSNITICVGGGIGTPERSAEYLSGRWAEVHG 634 (3089)
T ss_dssp HHHHHHHHTTSTTSCEEEEECCSSSSEECCS--CCHHHHHHHHHHHHTTCTTEEEEEESSCCCTTTTHHHHHTGGGGTTT
T ss_pred HHHHHHhhhhcCCCcEEEEEeCCCcCCCCCc--ccHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHhccccccccC
Confidence 9999999999 7888763 443221 233444533333322 279999999999999999999
Q ss_pred --HcCCCEEEEchHHHHHh
Q 019244 274 --ALGASGIFIGRPVVYSL 290 (344)
Q Consensus 274 --alGAd~V~ig~~~l~~~ 290 (344)
++|||+|+||+.|+...
T Consensus 635 ~p~lGAdGV~vGTrfl~t~ 653 (3089)
T 3zen_D 635 YPLMPIDGILVGTAAMATL 653 (3089)
T ss_dssp CCCCCCSEEECSSTTTTCT
T ss_pred ccCCCCCEEEecHHHHhCc
Confidence 99999999999998654
|
| >2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.20 E-value=3e-06 Score=77.45 Aligned_cols=77 Identities=14% Similarity=0.173 Sum_probs=59.2
Q ss_pred HHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHH
Q 019244 210 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 289 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~ 289 (344)
.+.++.+.+.|++.|.+.+........| +.++.+.++++.+ ++|||++|||++.+|+.+++.+||++|++|+.++.+
T Consensus 159 ~e~~~~~~~~G~~~i~~t~~~~~g~~~g-~~~~~i~~l~~~~--~ipvia~GGI~~~ed~~~~~~~Gadgv~vgsal~~~ 235 (266)
T 2w6r_A 159 RDWVVEVEKRGAGEILLTSIDRDGTKSG-YDTEMIRFVRPLT--TLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFR 235 (266)
T ss_dssp HHHHHHHHHTTCSEEEEEETTTTTTCSC-CCHHHHHHHGGGC--CSCEEEESCCCSHHHHHHHHHHTCSEEEESTTTC--
T ss_pred HHHHHHHHHcCCCEEEEEeecCCCCcCC-CCHHHHHHHHHHc--CCCEEEeCCCCCHHHHHHHHHcCCHHHHccHHHHcC
Confidence 3557899999999999854211111122 3577787777665 799999999999999999999999999999998763
|
| >1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1 | Back alignment and structure |
|---|
Probab=98.18 E-value=1.3e-05 Score=70.50 Aligned_cols=79 Identities=24% Similarity=0.293 Sum_probs=61.2
Q ss_pred ecCHHHHHHHHHcCCcEEEEcc-C-CCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEch
Q 019244 207 VLTAEDARIAVQAGAAGIIVSN-H-GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 284 (344)
Q Consensus 207 v~~~~~a~~~~~~G~d~I~v~~-~-gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~ 284 (344)
+.+++++..+.+.|+|+|.+++ . ++......+..++.+.++++.. ++||+++|||. .+++.+++.+||++|.+|+
T Consensus 115 ~~t~~e~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~pvia~GGI~-~~nv~~~~~~Ga~gv~vgs 191 (215)
T 1xi3_A 115 VYSLEEALEAEKKGADYLGAGSVFPTKTKEDARVIGLEGLRKIVESV--KIPVVAIGGIN-KDNAREVLKTGVDGIAVIS 191 (215)
T ss_dssp ESSHHHHHHHHHHTCSEEEEECSSCC----CCCCCHHHHHHHHHHHC--SSCEEEESSCC-TTTHHHHHTTTCSEEEESH
T ss_pred cCCHHHHHHHHhcCCCEEEEcCCccCCCCCCCCCcCHHHHHHHHHhC--CCCEEEECCcC-HHHHHHHHHcCCCEEEEhH
Confidence 4678888899999999999864 1 1111112234567777777665 79999999999 9999999999999999999
Q ss_pred HHHH
Q 019244 285 PVVY 288 (344)
Q Consensus 285 ~~l~ 288 (344)
.++.
T Consensus 192 ~i~~ 195 (215)
T 1xi3_A 192 AVMG 195 (215)
T ss_dssp HHHT
T ss_pred HHhC
Confidence 9875
|
| >2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A | Back alignment and structure |
|---|
Probab=98.16 E-value=2.3e-05 Score=71.96 Aligned_cols=87 Identities=23% Similarity=0.371 Sum_probs=65.0
Q ss_pred HHHHHHhcCCcEEEEee---------cCH---HHH-HHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcE
Q 019244 191 VKWLQTITKLPILVKGV---------LTA---EDA-RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 257 (344)
Q Consensus 191 i~~i~~~~~~PvivK~v---------~~~---~~a-~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~v 257 (344)
+.++.+.+++|+++... .+. +++ +.+.++|+|+|.++.. ..++.+.++.+.+ ++||
T Consensus 137 v~~~~~~~g~~viv~~~~~G~~l~~~~~~~~~~~~a~~a~~~Gad~i~~~~~---------~~~~~l~~i~~~~--~ipv 205 (273)
T 2qjg_A 137 IAETCEYWGMPLIAMMYPRGKHIQNERDPELVAHAARLGAELGADIVKTSYT---------GDIDSFRDVVKGC--PAPV 205 (273)
T ss_dssp HHHHHHHHTCCEEEEEEECSTTCSCTTCHHHHHHHHHHHHHTTCSEEEECCC---------SSHHHHHHHHHHC--SSCE
T ss_pred HHHHHHHcCCCEEEEeCCCCcccCCCCCHhHHHHHHHHHHHcCCCEEEECCC---------CCHHHHHHHHHhC--CCCE
Confidence 33333446899998741 344 344 8899999999998731 2456777877766 7999
Q ss_pred EEecCCCC--HHH----HHHHHHcCCCEEEEchHHHH
Q 019244 258 FLDGGVRR--GTD----VFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 258 ia~GGIr~--g~d----v~kalalGAd~V~ig~~~l~ 288 (344)
++.|||++ .+| +.+++.+||++|.+|+.++.
T Consensus 206 va~GGi~~~~~~~~~~~~~~~~~~Ga~gv~vg~~i~~ 242 (273)
T 2qjg_A 206 VVAGGPKTNTDEEFLQMIKDAMEAGAAGVAVGRNIFQ 242 (273)
T ss_dssp EEECCSCCSSHHHHHHHHHHHHHHTCSEEECCHHHHT
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHcCCcEEEeeHHhhC
Confidence 99999995 667 55666899999999999875
|
| >2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.16 E-value=3.1e-05 Score=70.99 Aligned_cols=47 Identities=21% Similarity=0.268 Sum_probs=40.1
Q ss_pred HHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhh
Q 019244 242 MALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 291 (344)
Q Consensus 242 ~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~ 291 (344)
+.+.++++.. ++||++.+||++++++.+ +..|||+|.+|+.+...+.
T Consensus 196 ~~v~~vr~~~--~~pv~vG~GI~t~e~~~~-~~~gADgvIVGSai~~~~~ 242 (262)
T 2ekc_A 196 KKVEEYRELC--DKPVVVGFGVSKKEHARE-IGSFADGVVVGSALVKLAG 242 (262)
T ss_dssp HHHHHHHHHC--CSCEEEESSCCSHHHHHH-HHTTSSEEEECHHHHHHHH
T ss_pred HHHHHHHhhc--CCCEEEeCCCCCHHHHHH-HHcCCCEEEECHHHHhhhh
Confidence 4566666654 799999999999999998 8899999999999998653
|
| >2a4a_A Deoxyribose-phosphate aldolase; lyase, TIM beta/alpha barrel, DEOC, DERA, structur genomics, structural genomics consortium, SGC; 1.84A {Plasmodium yoelii yoelii} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=98.14 E-value=4.3e-06 Score=77.23 Aligned_cols=89 Identities=12% Similarity=0.183 Sum_probs=59.7
Q ss_pred HHHHHHHHHhcCCcEEEEeec-----C-HH----HHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHc------
Q 019244 188 WKDVKWLQTITKLPILVKGVL-----T-AE----DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT------ 251 (344)
Q Consensus 188 ~~~i~~i~~~~~~PvivK~v~-----~-~~----~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~------ 251 (344)
.++|..+++..+ +..+|.++ + .+ -++.+.++|+|+|..|+.-+. ....+.....+.++.+..
T Consensus 144 ~~eI~~v~~a~~-~~~lKVIlEt~~L~d~e~i~~A~~ia~eaGADfVKTSTGf~~-~gAT~edv~lm~~~v~~~~~~~~~ 221 (281)
T 2a4a_A 144 TKLTQSVKKLLT-NKILKVIIEVGELKTEDLIIKTTLAVLNGNADFIKTSTGKVQ-INATPSSVEYIIKAIKEYIKNNPE 221 (281)
T ss_dssp HHHHHHHHTTCT-TSEEEEECCHHHHCSHHHHHHHHHHHHTTTCSEEECCCSCSS-CCCCHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHhc-CCceEEEEecccCCcHHHHHHHHHHHHHhCCCEEEeCCCCCC-CCCCHHHHHHHHHHHHHhhccccc
Confidence 456888888764 35678762 3 33 146688999999999852110 001233344444433211
Q ss_pred -cCCCcEEEecCCCCHHHHHHHHHcCCC
Q 019244 252 -QGRIPVFLDGGVRRGTDVFKALALGAS 278 (344)
Q Consensus 252 -~~~~~via~GGIr~g~dv~kalalGAd 278 (344)
+.+++|.++||||+.+|+++.+.+||+
T Consensus 222 tg~~vgVKaaGGIrt~e~al~~i~aga~ 249 (281)
T 2a4a_A 222 KNNKIGLKVSGGISDLNTASHYILLARR 249 (281)
T ss_dssp GTTCCEEEEESSCCSHHHHHHHHHHHHH
T ss_pred CCCCceEEEeCCCCCHHHHHHHHHHhhh
Confidence 568999999999999999999999887
|
| >1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=98.14 E-value=9.8e-06 Score=72.78 Aligned_cols=88 Identities=16% Similarity=0.127 Sum_probs=66.9
Q ss_pred HHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchh-hHHHHHHHHHHccCCCcEEEecCCCCHHH
Q 019244 190 DVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTD 268 (344)
Q Consensus 190 ~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~-~~~~l~~i~~~~~~~~~via~GGIr~g~d 268 (344)
.+...++..++|++. ++.|++++..+.++|+|+|.++- . ... ..+.|..++..++ ++|+++.|||. ..+
T Consensus 110 ~v~~~~~~~g~~~i~-G~~t~~e~~~A~~~Gad~vk~FP--a-----~~~~G~~~lk~i~~~~~-~ipvvaiGGI~-~~N 179 (225)
T 1mxs_A 110 DILEAGVDSEIPLLP-GISTPSEIMMGYALGYRRFKLFP--A-----EISGGVAAIKAFGGPFG-DIRFCPTGGVN-PAN 179 (225)
T ss_dssp HHHHHHHHCSSCEEC-EECSHHHHHHHHTTTCCEEEETT--H-----HHHTHHHHHHHHHTTTT-TCEEEEBSSCC-TTT
T ss_pred HHHHHHHHhCCCEEE-eeCCHHHHHHHHHCCCCEEEEcc--C-----ccccCHHHHHHHHhhCC-CCeEEEECCCC-HHH
Confidence 444555557888877 48999999999999999999932 1 011 2456666665543 79999999995 789
Q ss_pred HHHHHH-cCCCEEEEchHHHH
Q 019244 269 VFKALA-LGASGIFIGRPVVY 288 (344)
Q Consensus 269 v~kala-lGAd~V~ig~~~l~ 288 (344)
+...++ .||++|. |+.++.
T Consensus 180 ~~~~l~~~Ga~~v~-gSai~~ 199 (225)
T 1mxs_A 180 VRNYMALPNVMCVG-TTWMLD 199 (225)
T ss_dssp HHHHHHSTTBCCEE-ECTTSC
T ss_pred HHHHHhccCCEEEE-EchhcC
Confidence 999999 6999999 887764
|
| >3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A | Back alignment and structure |
|---|
Probab=98.14 E-value=5.2e-05 Score=68.13 Aligned_cols=71 Identities=23% Similarity=0.265 Sum_probs=52.3
Q ss_pred hhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHh
Q 019244 238 PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALS 316 (344)
Q Consensus 238 ~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~ 316 (344)
+..++-+.++++.. .+++|.++|||+ .+.+.++..+|||.+.+||+++.+ +.....++.++++++......
T Consensus 154 ~~~l~ki~~lr~~~-~~~~I~VdGGI~-~~t~~~~~~aGAd~~VvGsaIf~a------~dp~~~~~~l~~~~~~~~~~~ 224 (228)
T 3ovp_A 154 EDMMPKVHWLRTQF-PSLDIEVDGGVG-PDTVHKCAEAGANMIVSGSAIMRS------EDPRSVINLLRNVCSEAAQKR 224 (228)
T ss_dssp GGGHHHHHHHHHHC-TTCEEEEESSCS-TTTHHHHHHHTCCEEEESHHHHTC------SCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhc-CCCCEEEeCCcC-HHHHHHHHHcCCCEEEEeHHHhCC------CCHHHHHHHHHHHHHHHHhhc
Confidence 44566677776654 368999999996 899999999999999999987642 122345667777777666543
|
| >1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A | Back alignment and structure |
|---|
Probab=98.13 E-value=7.5e-06 Score=82.99 Aligned_cols=74 Identities=19% Similarity=0.139 Sum_probs=62.4
Q ss_pred HHHHHHHHHcCCcEEEEccC--CCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHH-cCCCEEEEchHH
Q 019244 210 AEDARIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA-LGASGIFIGRPV 286 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~~--gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kala-lGAd~V~ig~~~ 286 (344)
.+.++.+.++|++.|.+.+. .|+ ..| +.++.+.++.+.+ ++|||++|||++.+|+.+++. +||++|++|+.|
T Consensus 455 ~e~a~~~~~~Ga~~il~t~~~~dG~--~~G-~d~~li~~l~~~~--~iPVIasGGi~s~~d~~~~~~~~G~~gvivg~a~ 529 (555)
T 1jvn_A 455 WELTRACEALGAGEILLNCIDKDGS--NSG-YDLELIEHVKDAV--KIPVIASSGAGVPEHFEEAFLKTRADACLGAGMF 529 (555)
T ss_dssp HHHHHHHHHTTCCEEEECCGGGTTT--CSC-CCHHHHHHHHHHC--SSCEEECSCCCSHHHHHHHHHHSCCSEEEESHHH
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCC--CCC-CCHHHHHHHHHhC--CccEEEECCCCCHHHHHHHHHhcCChHHHHHHHH
Confidence 57899999999999998542 222 133 4788899998877 799999999999999999998 899999999998
Q ss_pred HH
Q 019244 287 VY 288 (344)
Q Consensus 287 l~ 288 (344)
+.
T Consensus 530 ~~ 531 (555)
T 1jvn_A 530 HR 531 (555)
T ss_dssp HT
T ss_pred Hc
Confidence 75
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} | Back alignment and structure |
|---|
Probab=98.11 E-value=3e-05 Score=80.44 Aligned_cols=101 Identities=14% Similarity=-0.030 Sum_probs=72.1
Q ss_pred CCcHHHHHHHHHhc--CCcEEEEeec--------CHHH----HHHHHHcCCcEEEEccCCC---C--CCCCch-hhHHHH
Q 019244 185 SLSWKDVKWLQTIT--KLPILVKGVL--------TAED----ARIAVQAGAAGIIVSNHGA---R--QLDYVP-ATIMAL 244 (344)
Q Consensus 185 ~~~~~~i~~i~~~~--~~PvivK~v~--------~~~~----a~~~~~~G~d~I~v~~~gG---~--~~~~g~-~~~~~l 244 (344)
.|..+.++.+|+.+ +.||.+|... +.++ ++.+.+ |+|.+.|+..+- . ...... ......
T Consensus 208 r~~~ei~~avr~~~g~~~~v~~r~s~~~~~~~g~~~~~~~~~~~~l~~-~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 286 (690)
T 3k30_A 208 RLLRELLEDTLDECAGRAAVACRITVEEEIDGGITREDIEGVLRELGE-LPDLWDFAMGSWEGDSVTSRFAPEGRQEEFV 286 (690)
T ss_dssp HHHHHHHHHHHHHHTTSSEEEEEEECCCCSTTSCCHHHHHHHHHHHTT-SSSEEEEECSCHHHHTCCTTTCCTTTTHHHH
T ss_pred HHHHHHHHHHHHHhCCCceEEEEECccccCCCCCCHHHHHHHHHHHHh-hcCEEEEecccccccCCCCccCCccccHHHH
Confidence 35667899999998 5799999852 2343 455555 899999975320 0 000111 123445
Q ss_pred HHHHHHccCCCcEEEecCCCCHHHHHHHHHcC-CCEEEEchHHHH
Q 019244 245 EEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 288 (344)
Q Consensus 245 ~~i~~~~~~~~~via~GGIr~g~dv~kalalG-Ad~V~ig~~~l~ 288 (344)
..+++.+ ++|||+.|||++++++.++|+.| ||+|++||+++.
T Consensus 287 ~~i~~~~--~~pvi~~G~i~~~~~a~~~l~~g~~d~v~~gR~~~~ 329 (690)
T 3k30_A 287 AGLKKLT--TKPVVGVGRFTSPDAMVRQIKAGILDLIGAARPSIA 329 (690)
T ss_dssp TTSGGGC--SSCEEECSCCCCHHHHHHHHHTTSCSEEEESHHHHH
T ss_pred HHHHHHc--CCeEEEeCCCCCHHHHHHHHHCCCcceEEEcHHhHh
Confidence 5555555 79999999999999999999998 999999999974
|
| >1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=1.8e-05 Score=73.03 Aligned_cols=116 Identities=23% Similarity=0.310 Sum_probs=75.0
Q ss_pred HHHHHHHHHhcCCcEEEEe----ec---CHHHHHHHHHcCCcEEEEccCCCC------------CC--------------
Q 019244 188 WKDVKWLQTITKLPILVKG----VL---TAEDARIAVQAGAAGIIVSNHGAR------------QL-------------- 234 (344)
Q Consensus 188 ~~~i~~i~~~~~~PvivK~----v~---~~~~a~~~~~~G~d~I~v~~~gG~------------~~-------------- 234 (344)
++.++++|+..++|+++=. +. ....++.+.++|+|++++-.-.-. .+
T Consensus 80 ~~~v~~ir~~~~~Pii~m~y~n~v~~~g~~~f~~~~~~aG~dGviv~Dl~~ee~~~~~~~~~~~gl~~i~liap~s~~er 159 (271)
T 1ujp_A 80 LELVREVRALTEKPLFLMTYLNPVLAWGPERFFGLFKQAGATGVILPDLPPDEDPGLVRLAQEIGLETVFLLAPTSTDAR 159 (271)
T ss_dssp HHHHHHHHHHCCSCEEEECCHHHHHHHCHHHHHHHHHHHTCCEEECTTCCGGGCHHHHHHHHHHTCEEECEECTTCCHHH
T ss_pred HHHHHHHHhcCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHHcCCceEEEeCCCCCHHH
Confidence 5678889888889988721 11 124477788999998877421100 00
Q ss_pred -----------------C--Cc------hhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHH
Q 019244 235 -----------------D--YV------PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 289 (344)
Q Consensus 235 -----------------~--~g------~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~ 289 (344)
. .| .+..+.+.++++.. ++||++.|||++++++.++ .|||+|.+|+.+...
T Consensus 160 i~~ia~~~~gfiy~vs~~G~TG~~~~~~~~~~~~v~~vr~~~--~~Pv~vGfGI~t~e~a~~~--~~ADgVIVGSAi~~~ 235 (271)
T 1ujp_A 160 IATVVRHATGFVYAVSVTGVTGMRERLPEEVKDLVRRIKART--ALPVAVGFGVSGKATAAQA--AVADGVVVGSALVRA 235 (271)
T ss_dssp HHHHHTTCCSCEEEECC------------CCHHHHHHHHTTC--CSCEEEESCCCSHHHHHHH--TTSSEEEECHHHHHH
T ss_pred HHHHHHhCCCCEEEEecCcccCCCCCCCccHHHHHHHHHhhc--CCCEEEEcCCCCHHHHHHh--cCCCEEEEChHHhcc
Confidence 0 01 11134566666544 7999999999999999996 999999999999886
Q ss_pred hhhcChHHHHHHHHHHHHHHHHHH
Q 019244 290 LAAEGEKGVRRVLEMLREEFELAM 313 (344)
Q Consensus 290 ~~~~G~~~v~~~l~~l~~el~~~m 313 (344)
+.. + + .+..+.++|+..+
T Consensus 236 ~~~-~-~----~~~~fv~~l~~~~ 253 (271)
T 1ujp_A 236 LEE-G-R----SLAPLLQEIRQGL 253 (271)
T ss_dssp HHT-T-C----CHHHHHHHHHHHH
T ss_pred cch-H-H----HHHHHHHHHHHHH
Confidence 431 1 2 3344555555444
|
| >3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A | Back alignment and structure |
|---|
Probab=98.04 E-value=1.2e-05 Score=72.81 Aligned_cols=77 Identities=17% Similarity=0.173 Sum_probs=60.6
Q ss_pred CHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 209 TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 209 ~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
..+.++.+.++|++.|.+...-+... .....++.+.++++.+ ++||+++|||++.+|+.++++.|||.|.+|+.++.
T Consensus 37 ~~~~a~~~~~~G~~~i~v~d~~~~~~-~~~~~~~~i~~i~~~~--~ipvi~~Ggi~~~~~~~~~l~~Gad~V~ig~~~l~ 113 (247)
T 3tdn_A 37 LRDWVVEVEKRGAGEILLTSIDRDGT-KSGYDTEMIRFVRPLT--TLPIIASGGAGKMEHFLEAFLRGADKVSINTAAVE 113 (247)
T ss_dssp HHHHHHHHHHTTCSEEEEEETTTTTC-SSCCCHHHHHHHGGGC--CSCEEEESCCCSHHHHHHHHHTTCSEECCSHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEEecCcccC-CCcccHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCCeeehhhHHhh
Confidence 35778999999999999864311100 1134567788887765 79999999999999999999999999999998763
|
| >1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=98.04 E-value=0.00017 Score=71.79 Aligned_cols=68 Identities=15% Similarity=0.233 Sum_probs=56.2
Q ss_pred HHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 019244 210 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 283 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig 283 (344)
.+.++++.++|+|.|++++.+|+ ....++.+.++++..+ .+|++ .|++.+..++.+++.+|||+|.+|
T Consensus 235 ~~~a~~l~~~G~d~ivi~~a~g~----~~~~~~~i~~l~~~~p-~~pvi-~G~v~t~~~a~~~~~~Gad~I~vg 302 (491)
T 1zfj_A 235 FERAEALFEAGADAIVIDTAHGH----SAGVLRKIAEIRAHFP-NRTLI-AGNIATAEGARALYDAGVDVVKVG 302 (491)
T ss_dssp HHHHHHHHHHTCSEEEECCSCTT----CHHHHHHHHHHHHHCS-SSCEE-EEEECSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHcCCCeEEEeeecCc----chhHHHHHHHHHHHCC-CCcEe-CCCccCHHHHHHHHHcCCCEEEEC
Confidence 58899999999999999875542 1245667777777663 78998 899999999999999999999887
|
| >4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=98.00 E-value=5.6e-05 Score=68.55 Aligned_cols=102 Identities=16% Similarity=0.222 Sum_probs=77.3
Q ss_pred CcHHHHHHHHHhcCCcEEEEee-cCHHHHHHHHHcCCcEEEEccC---------------C-------------------
Q 019244 186 LSWKDVKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSNH---------------G------------------- 230 (344)
Q Consensus 186 ~~~~~i~~i~~~~~~PvivK~v-~~~~~a~~~~~~G~d~I~v~~~---------------g------------------- 230 (344)
...+.++++.+.+.+|+.+.+- .+.++++.+.++|+|.|++... |
T Consensus 62 ~~~~~i~~i~~~~~~pl~vGGGIrs~e~~~~~l~~GadkVii~t~a~~~p~li~e~~~~~g~q~iv~~iD~~~~~~~~v~ 141 (243)
T 4gj1_A 62 RQFALIEKLAKEVSVNLQVGGGIRSKEEVKALLDCGVKRVVIGSMAIKDATLCLEILKEFGSEAIVLALDTILKEDYVVA 141 (243)
T ss_dssp CCHHHHHHHHHHCCSEEEEESSCCCHHHHHHHHHTTCSEEEECTTTTTCHHHHHHHHHHHCTTTEEEEEEEEESSSEEEC
T ss_pred hHHHHHHHHHHhcCCCeEeccccccHHHHHHHHHcCCCEEEEccccccCCchHHHHHhcccCceEEEEEEEEeCCCCEEE
Confidence 3567899999999999999875 7899999999999999988531 1
Q ss_pred ---CCC---------------------------CCC--chhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCC
Q 019244 231 ---ARQ---------------------------LDY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGAS 278 (344)
Q Consensus 231 ---G~~---------------------------~~~--g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd 278 (344)
++. .|+ ..+.++.+..+.+.. .++|||++||+++.+|+.+ +..+++
T Consensus 142 ~~gw~~~~~~~~~~~~~~~~~~g~~eil~t~Id~DGt~~G~d~~l~~~l~~~~-~~ipviasGGv~~~~Dl~~-l~~~~~ 219 (243)
T 4gj1_A 142 VNAWQEASDKKLMEVLDFYSNKGLKHILCTDISKDGTMQGVNVRLYKLIHEIF-PNICIQASGGVASLKDLEN-LKGICS 219 (243)
T ss_dssp --------CCBHHHHHHHHHTTTCCEEEEEETTC-----CCCHHHHHHHHHHC-TTSEEEEESCCCSHHHHHH-TTTTCS
T ss_pred ecCceecccchHHHHHHHHhhcCCcEEEeeeecccccccCCCHHHHHHHHHhc-CCCCEEEEcCCCCHHHHHH-HHccCc
Confidence 100 011 123566777776654 3699999999999999876 466799
Q ss_pred EEEEchHHHHH
Q 019244 279 GIFIGRPVVYS 289 (344)
Q Consensus 279 ~V~ig~~~l~~ 289 (344)
+|.+|++|+++
T Consensus 220 gvivg~Al~~g 230 (243)
T 4gj1_A 220 GVIVGKALLDG 230 (243)
T ss_dssp EEEECHHHHTT
T ss_pred hhehHHHHHCC
Confidence 99999998763
|
| >1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A | Back alignment and structure |
|---|
Probab=97.91 E-value=2.3e-05 Score=77.16 Aligned_cols=115 Identities=16% Similarity=0.218 Sum_probs=85.2
Q ss_pred hcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcC
Q 019244 197 ITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 276 (344)
Q Consensus 197 ~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalG 276 (344)
..++.+++ .+.+.++++++.++|++.|-+-|.+-+.+ .+.++...++.+.++.++++|+.|||.|++|+.++..+
T Consensus 155 ~lgm~~Lv-Evh~~eE~~~A~~lga~iIGinnr~L~t~---~~dl~~~~~L~~~ip~~~~vIaEsGI~t~edv~~~~~~- 229 (452)
T 1pii_A 155 SLEMGVLT-EVSNEEEQERAIALGAKVVGINNRDLRDL---SIDLNRTRELAPKLGHNVTVISESGINTYAQVRELSHF- 229 (452)
T ss_dssp HTTCEEEE-EECSHHHHHHHHHTTCSEEEEESEETTTT---EECTHHHHHHHHHHCTTSEEEEESCCCCHHHHHHHTTT-
T ss_pred HcCCeEEE-EeCCHHHHHHHHHCCCCEEEEeCCCCCCC---CCCHHHHHHHHHhCCCCCeEEEECCCCCHHHHHHHHHh-
Confidence 35776665 57899999999999999998877543322 23455555666666667899999999999999999999
Q ss_pred CCEEEEchHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHhhhc
Q 019244 277 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEIT 325 (344)
Q Consensus 277 Ad~V~ig~~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~~~i~~l~ 325 (344)
|++|.+|+.++.. +.....++.|.. .....||.++.+|..
T Consensus 230 a~avLVGealmr~------~d~~~~~~~l~~---~~~KICGit~~eda~ 269 (452)
T 1pii_A 230 ANGFLIGSALMAH------DDLHAAVRRVLL---GENKVCGLTRGQDAK 269 (452)
T ss_dssp CSEEEECHHHHTC------SCHHHHHHHHHH---CSCEECCCCSHHHHH
T ss_pred CCEEEEcHHHcCC------cCHHHHHHHHHH---HhccccCCCcHHHHH
Confidence 9999999999863 122233444432 234678999988875
|
| >2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.89 E-value=1.7e-05 Score=72.75 Aligned_cols=74 Identities=12% Similarity=0.162 Sum_probs=58.0
Q ss_pred HHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccC--CCcEEEecCCCCHHHHHHHHHc--CCCEEEEchHH
Q 019244 211 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQG--RIPVFLDGGVRRGTDVFKALAL--GASGIFIGRPV 286 (344)
Q Consensus 211 ~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~--~~~via~GGIr~g~dv~kalal--GAd~V~ig~~~ 286 (344)
+-++.+.++ ++.|.+...---+...| +.++.+.++.+.++. ++|||++|||+|.+|+.+++.+ ||++|++|+.+
T Consensus 162 e~a~~~~~~-a~~il~t~i~~dG~~~G-~d~eli~~l~~~~~~~~~iPVIasGGi~s~ed~~~l~~~~~G~~gvivg~al 239 (260)
T 2agk_A 162 DTFRELRKY-TNEFLIHAADVEGLCGG-IDELLVSKLFEWTKDYDDLKIVYAGGAKSVDDLKLVDELSHGKVDLTFGSSL 239 (260)
T ss_dssp HHHHHHTTT-CSEEEEEC-------CC-CCHHHHHHHHHHHTTCSSCEEEEESCCCCTHHHHHHHHHHTTCEEEECCTTB
T ss_pred HHHHHHHHh-cCEEEEEeeccccCcCC-CCHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHhcCCCCEEEeeCCH
Confidence 778899999 99999854211112234 378889888887622 6999999999999999999998 99999999997
|
| >1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00018 Score=66.03 Aligned_cols=91 Identities=29% Similarity=0.487 Sum_probs=66.5
Q ss_pred HHHHHHHH---hcCCcEEEEeec---------CHHH----HHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHcc
Q 019244 189 KDVKWLQT---ITKLPILVKGVL---------TAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ 252 (344)
Q Consensus 189 ~~i~~i~~---~~~~PvivK~v~---------~~~~----a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~ 252 (344)
++++++++ .+++|+|+=.-. +++. ++.+.++|+|+|.++.. .+.+.+.++++.+
T Consensus 125 ~~~~~v~~~~~~~~~~vIi~~~~~G~~~~~~~s~~~i~~a~~~a~~~GAD~vkt~~~---------~~~e~~~~~~~~~- 194 (263)
T 1w8s_A 125 EELARIKRDAVKFDLPLVVESFPRGGKVVNETAPEIVAYAARIALELGADAMKIKYT---------GDPKTFSWAVKVA- 194 (263)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECCCSTTCCCTTCHHHHHHHHHHHHHHTCSEEEEECC---------SSHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHcCCeEEEEeeCCCCccccCCCHHHHHHHHHHHHHcCCCEEEEcCC---------CCHHHHHHHHHhC-
Confidence 34555544 458998763213 4443 46788999999999732 1457777777776
Q ss_pred CCCcEEEecCCC--CHHHHHHHH----HcCCCEEEEchHHHHH
Q 019244 253 GRIPVFLDGGVR--RGTDVFKAL----ALGASGIFIGRPVVYS 289 (344)
Q Consensus 253 ~~~~via~GGIr--~g~dv~kal----alGAd~V~ig~~~l~~ 289 (344)
+.+||+++|||+ +.+|+++.+ ..||+.+.+||.++..
T Consensus 195 ~~~pV~asGGi~~~~~~~~l~~i~~~~~aGA~GvsvgraI~~~ 237 (263)
T 1w8s_A 195 GKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRNVWQR 237 (263)
T ss_dssp TTSCEEEECCSCCSSHHHHHHHHHHHHHTTCCEEEESHHHHTS
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEehhhcCC
Confidence 345999999999 888888777 8999999999998753
|
| >3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=97.87 E-value=0.0002 Score=65.06 Aligned_cols=101 Identities=19% Similarity=0.229 Sum_probs=70.2
Q ss_pred cHHHHHHHHHhc-CCcEEEEee-cCHH-HHHHHHHcCCcEEEEccC---------------CC---------CC------
Q 019244 187 SWKDVKWLQTIT-KLPILVKGV-LTAE-DARIAVQAGAAGIIVSNH---------------GA---------RQ------ 233 (344)
Q Consensus 187 ~~~~i~~i~~~~-~~PvivK~v-~~~~-~a~~~~~~G~d~I~v~~~---------------gG---------~~------ 233 (344)
..+.++.+|+.+ ++|+-+... .+++ -++.+.++|+|.|++..- |- +.
T Consensus 73 G~~~v~~lr~~~p~~~ldvHLmv~~p~~~i~~~~~aGAd~itvH~Ea~~~~~~~i~~ir~~G~k~Gvalnp~Tp~e~l~~ 152 (246)
T 3inp_A 73 GPMVLKALRDYGITAGMDVHLMVKPVDALIESFAKAGATSIVFHPEASEHIDRSLQLIKSFGIQAGLALNPATGIDCLKY 152 (246)
T ss_dssp CHHHHHHHHHHTCCSCEEEEEECSSCHHHHHHHHHHTCSEEEECGGGCSCHHHHHHHHHTTTSEEEEEECTTCCSGGGTT
T ss_pred CHHHHHHHHHhCCCCeEEEEEeeCCHHHHHHHHHHcCCCEEEEccccchhHHHHHHHHHHcCCeEEEEecCCCCHHHHHH
Confidence 446788888887 788888774 3443 366777888888888421 10 00
Q ss_pred -------------------CCCchhhHHHHHHHHHHc---cCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 234 -------------------LDYVPATIMALEEVVKAT---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 234 -------------------~~~g~~~~~~l~~i~~~~---~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
..+.+.+++-+.++++.. +.+++|.++|||. .+.+.++..+|||.+.+||+++.
T Consensus 153 ~l~~vD~VlvMsV~PGfgGQ~fi~~~l~KI~~lr~~~~~~~~~~~I~VDGGI~-~~ti~~~~~aGAD~~V~GSaIf~ 228 (246)
T 3inp_A 153 VESNIDRVLIMSVNPGFGGQKFIPAMLDKAKEISKWISSTDRDILLEIDGGVN-PYNIAEIAVCGVNAFVAGSAIFN 228 (246)
T ss_dssp TGGGCSEEEEECSCTTC--CCCCTTHHHHHHHHHHHHHHHTSCCEEEEESSCC-TTTHHHHHTTTCCEEEESHHHHT
T ss_pred HHhcCCEEEEeeecCCCCCcccchHHHHHHHHHHHHHHhcCCCeeEEEECCcC-HHHHHHHHHcCCCEEEEehHHhC
Confidence 012244566666666543 2368999999999 68899999999999999998764
|
| >1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1 | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00011 Score=68.51 Aligned_cols=86 Identities=22% Similarity=0.237 Sum_probs=69.5
Q ss_pred HHHHHHHHhcCC-cEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHH
Q 019244 189 KDVKWLQTITKL-PILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 267 (344)
Q Consensus 189 ~~i~~i~~~~~~-PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~ 267 (344)
+.++.+++..+- ++++ ++-+.++++.+.++|+|+|.+++. +.+.+.++++.+.++++|.++||| +..
T Consensus 197 ~ai~~~r~~~~~~kI~v-ev~tlee~~eA~~aGaD~I~ld~~----------~~e~l~~~v~~~~~~~~I~ASGGI-t~~ 264 (296)
T 1qap_A 197 QAVEKAFWLHPDVPVEV-EVENLDELDDALKAGADIIMLDNF----------NTDQMREAVKRVNGQARLEVSGNV-TAE 264 (296)
T ss_dssp HHHHHHHHHSTTSCEEE-EESSHHHHHHHHHTTCSEEEESSC----------CHHHHHHHHHTTCTTCCEEECCCS-CHH
T ss_pred HHHHHHHHhCCCCcEEE-EeCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhCCCCeEEEECCC-CHH
Confidence 457788877643 5555 577889999999999999999762 345666666666668999999999 899
Q ss_pred HHHHHHHcCCCEEEEchHH
Q 019244 268 DVFKALALGASGIFIGRPV 286 (344)
Q Consensus 268 dv~kalalGAd~V~ig~~~ 286 (344)
.+.+....|+|.+.+|+..
T Consensus 265 ~i~~~a~~GvD~isvGsli 283 (296)
T 1qap_A 265 TLREFAETGVDFISVGALT 283 (296)
T ss_dssp HHHHHHHTTCSEEECSHHH
T ss_pred HHHHHHHcCCCEEEEeHHH
Confidence 9999999999999999844
|
| >2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=97.86 E-value=8e-05 Score=65.84 Aligned_cols=95 Identities=15% Similarity=0.182 Sum_probs=58.6
Q ss_pred HHHHHHhcCCcEEEEee--cCHHHHHHHHHcCCcEEEEcc-C-CCCCCCCchhhHHHHHHHHHHcc---CCCcEEEecCC
Q 019244 191 VKWLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVSN-H-GARQLDYVPATIMALEEVVKATQ---GRIPVFLDGGV 263 (344)
Q Consensus 191 i~~i~~~~~~PvivK~v--~~~~~a~~~~~~G~d~I~v~~-~-gG~~~~~g~~~~~~l~~i~~~~~---~~~~via~GGI 263 (344)
++++++. +.++++ .+ .++.+.......++|+|.+.+ + |+......+..++.+.++++... .++|++++|||
T Consensus 102 ~~~~~~~-g~~i~~-~~~~~t~~e~~~~~~~~~d~vl~~~~~~g~~g~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI 179 (220)
T 2fli_A 102 LQKIKAA-GMKAGV-VINPGTPATALEPLLDLVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGV 179 (220)
T ss_dssp HHHHHHT-TSEEEE-EECTTSCGGGGGGGTTTCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHHHHTTCCCEEEEESSC
T ss_pred HHHHHHc-CCcEEE-EEcCCCCHHHHHHHHhhCCEEEEEEECCCCcccccCHHHHHHHHHHHHHHHhcCCCceEEEECcC
Confidence 3555443 555433 33 333444444456789886532 2 22112223334455555554431 26899999999
Q ss_pred CCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 264 RRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 264 r~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
+ .+++.+++.+||+.|.+||+++.
T Consensus 180 ~-~~~~~~~~~~Gad~vvvGsai~~ 203 (220)
T 2fli_A 180 D-NKTIRACYEAGANVFVAGSYLFK 203 (220)
T ss_dssp C-TTTHHHHHHHTCCEEEESHHHHT
T ss_pred C-HHHHHHHHHcCCCEEEEChHHhC
Confidence 9 79999999999999999999875
|
| >1n7k_A Deoxyribose-phosphate aldolase; A.pernix, tetramer, alpha-beta TIM barrel, riken S genomics/proteomics initiative, RSGI, structural genomics,; 2.00A {Aeropyrum pernix} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00012 Score=66.00 Aligned_cols=90 Identities=19% Similarity=0.195 Sum_probs=62.9
Q ss_pred cHHHHHHHHHhc---CCcEEEEee-----cCHHH----HHHHHHcCCcEEEEccCCCCCCCC-chhhHHHHHH--HHHHc
Q 019244 187 SWKDVKWLQTIT---KLPILVKGV-----LTAED----ARIAVQAGAAGIIVSNHGARQLDY-VPATIMALEE--VVKAT 251 (344)
Q Consensus 187 ~~~~i~~i~~~~---~~PvivK~v-----~~~~~----a~~~~~~G~d~I~v~~~gG~~~~~-g~~~~~~l~~--i~~~~ 251 (344)
..++|..+++.. +.|+ |.+ ++.+. ++.+.++|+|+|+.|...+ . +..+.+.+.. +++.+
T Consensus 118 v~~ei~~v~~a~~~~g~~l--KvIlEt~~L~~e~i~~a~ria~eaGADfVKTsTG~~----~~~gAt~~dv~l~~m~~~v 191 (234)
T 1n7k_A 118 VYREVSGIVKLAKSYGAVV--KVILEAPLWDDKTLSLLVDSSRRAGADIVKTSTGVY----TKGGDPVTVFRLASLAKPL 191 (234)
T ss_dssp HHHHHHHHHHHHHHTTCEE--EEECCGGGSCHHHHHHHHHHHHHTTCSEEESCCSSS----CCCCSHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHhhcCCeE--EEEEeccCCCHHHHHHHHHHHHHhCCCEEEeCCCCC----CCCCCCHHHHHHHHHHHHH
Confidence 345677776654 4554 665 45544 4668899999999985211 1 2345555444 55555
Q ss_pred cCCCcEEEecCCCCHHHHHHHHHcCCCEEEEch
Q 019244 252 QGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 284 (344)
Q Consensus 252 ~~~~~via~GGIr~g~dv~kalalGAd~V~ig~ 284 (344)
+ +||.++||||+..|+++.+.+||+-++..+
T Consensus 192 ~--v~VKaaGGirt~~~al~~i~aGa~RiG~S~ 222 (234)
T 1n7k_A 192 G--MGVKASGGIRSGIDAVLAVGAGADIIGTSS 222 (234)
T ss_dssp T--CEEEEESSCCSHHHHHHHHHTTCSEEEETT
T ss_pred C--CCEEEecCCCCHHHHHHHHHcCccccchHH
Confidence 4 999999999999999999999999666554
|
| >2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=4.6e-05 Score=70.32 Aligned_cols=88 Identities=15% Similarity=0.113 Sum_probs=68.2
Q ss_pred HHHHHHHHHhcC--CcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHcc---CCCcEEEecC
Q 019244 188 WKDVKWLQTITK--LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ---GRIPVFLDGG 262 (344)
Q Consensus 188 ~~~i~~i~~~~~--~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~---~~~~via~GG 262 (344)
.+.++.+++..+ +++++ ++.+.++++.+.++|+|+|.+++. ++ +.+.++++.++ .+++|.++||
T Consensus 169 ~~ai~~~r~~~~~~~~i~v-ev~tlee~~~A~~aGaD~I~ld~~-------~~---~~l~~~v~~l~~~~~~~~i~AsGG 237 (273)
T 2b7n_A 169 KSFLTHARKNLPFTAKIEI-ECESFEEAKNAMNAGADIVMCDNL-------SV---LETKEIAAYRDAHYPFVLLEASGN 237 (273)
T ss_dssp HHHHHHHGGGSCTTCCEEE-EESSHHHHHHHHHHTCSEEEEETC-------CH---HHHHHHHHHHHHHCTTCEEEEESS
T ss_pred HHHHHHHHHhCCCCceEEE-EcCCHHHHHHHHHcCCCEEEECCC-------CH---HHHHHHHHHhhccCCCcEEEEECC
Confidence 346888888775 46665 678899999999999999999863 23 33444433332 3599999999
Q ss_pred CCCHHHHHHHHHcCCCEEEEchHHH
Q 019244 263 VRRGTDVFKALALGASGIFIGRPVV 287 (344)
Q Consensus 263 Ir~g~dv~kalalGAd~V~ig~~~l 287 (344)
| +.+.+.+.+..|||.+.+|+.+.
T Consensus 238 I-~~~ni~~~~~aGaD~i~vGs~i~ 261 (273)
T 2b7n_A 238 I-SLESINAYAKSGVDAISVGALIH 261 (273)
T ss_dssp C-CTTTHHHHHTTTCSEEECTHHHH
T ss_pred C-CHHHHHHHHHcCCcEEEEcHHhc
Confidence 9 89999999999999999998754
|
| >3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=2.3e-05 Score=69.73 Aligned_cols=94 Identities=16% Similarity=0.228 Sum_probs=63.4
Q ss_pred HHHHHHhcCCcEEEE--eecCHHHHHHHHHcCCcEEEEccC--CCC-CCCCchhhHHHHHHHHHHccCCCcEEEecCCCC
Q 019244 191 VKWLQTITKLPILVK--GVLTAEDARIAVQAGAAGIIVSNH--GAR-QLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 265 (344)
Q Consensus 191 i~~i~~~~~~PvivK--~v~~~~~a~~~~~~G~d~I~v~~~--gG~-~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~ 265 (344)
++.+++ .+++.++. ++.|+++++.+.+.|+|.+.+... ++. ....++..+..++++. +.++|++++|||+
T Consensus 102 ~~~~~~-~g~~~~~d~l~~~T~~~~~~~~~~g~d~v~~~~~~~~~~~g~~~~~~~l~~i~~~~---~~~~pi~v~GGI~- 176 (218)
T 3jr2_A 102 KKVADE-LNGEIQIEIYGNWTMQDAKAWVDLGITQAIYHRSRDAELAGIGWTTDDLDKMRQLS---ALGIELSITGGIV- 176 (218)
T ss_dssp HHHHHH-HTCEEEEECCSSCCHHHHHHHHHTTCCEEEEECCHHHHHHTCCSCHHHHHHHHHHH---HTTCEEEEESSCC-
T ss_pred HHHHHH-hCCccceeeeecCCHHHHHHHHHcCccceeeeeccccccCCCcCCHHHHHHHHHHh---CCCCCEEEECCCC-
Confidence 444544 36665532 346888899999999999876311 110 0112333444444443 2379999999995
Q ss_pred HHHHHHHHHcCCCEEEEchHHHHH
Q 019244 266 GTDVFKALALGASGIFIGRPVVYS 289 (344)
Q Consensus 266 g~dv~kalalGAd~V~ig~~~l~~ 289 (344)
..++.+++.+|||.+.+||+++.+
T Consensus 177 ~~~~~~~~~aGAd~vvvGsaI~~a 200 (218)
T 3jr2_A 177 PEDIYLFEGIKTKTFIAGRALAGA 200 (218)
T ss_dssp GGGGGGGTTSCEEEEEESGGGSHH
T ss_pred HHHHHHHHHcCCCEEEEchhhcCC
Confidence 899999999999999999998753
|
| >1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A | Back alignment and structure |
|---|
Probab=97.81 E-value=7.3e-05 Score=68.09 Aligned_cols=87 Identities=13% Similarity=0.163 Sum_probs=68.0
Q ss_pred cCCcEEEEeecCHHHHHHHHHc-CCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcC
Q 019244 198 TKLPILVKGVLTAEDARIAVQA-GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 276 (344)
Q Consensus 198 ~~~PvivK~v~~~~~a~~~~~~-G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalG 276 (344)
.++-+++ .+.+.++++++.++ |+|.|-+-|.+-+.. ...++...++.+.++.++++|+.|||.|++|+.++..+
T Consensus 149 lGl~~lv-Ev~~~eE~~~A~~l~g~~iIGinnr~l~t~---~~d~~~~~~l~~~ip~~~~vIaEsGI~t~edv~~~~~~- 223 (251)
T 1i4n_A 149 LGMDSLV-EVHSREDLEKVFSVIRPKIIGINTRDLDTF---EIKKNVLWELLPLVPDDTVVVAESGIKDPRELKDLRGK- 223 (251)
T ss_dssp TTCEEEE-EECSHHHHHHHHTTCCCSEEEEECBCTTTC---CBCTTHHHHHGGGSCTTSEEEEESCCCCGGGHHHHTTT-
T ss_pred cCCeEEE-EeCCHHHHHHHHhcCCCCEEEEeCcccccC---CCCHHHHHHHHHhCCCCCEEEEeCCCCCHHHHHHHHHh-
Confidence 4666655 57899999999999 999998877542222 22344444555556667899999999999999999999
Q ss_pred CCEEEEchHHHHH
Q 019244 277 ASGIFIGRPVVYS 289 (344)
Q Consensus 277 Ad~V~ig~~~l~~ 289 (344)
|++|.+|+.++.+
T Consensus 224 a~avLVG~aimr~ 236 (251)
T 1i4n_A 224 VNAVLVGTSIMKA 236 (251)
T ss_dssp CSEEEECHHHHHC
T ss_pred CCEEEEcHHHcCC
Confidence 9999999999874
|
| >1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00016 Score=65.29 Aligned_cols=76 Identities=17% Similarity=0.226 Sum_probs=58.6
Q ss_pred HHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 210 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
.+.++.+.++|+|.|.+....+.. ......++.+.++++.. ++||++.|||++..|+.+++++|||.|.+|+..+.
T Consensus 33 ~~~a~~~~~~Gad~i~v~d~~~~~-~~~~~~~~~i~~i~~~~--~ipvi~~ggI~~~~~~~~~~~~Gad~V~lg~~~l~ 108 (253)
T 1thf_D 33 VELGKFYSEIGIDELVFLDITASV-EKRKTMLELVEKVAEQI--DIPFTVGGGIHDFETASELILRGADKVSINTAAVE 108 (253)
T ss_dssp HHHHHHHHHTTCCEEEEEESSCSS-SHHHHHHHHHHHHHTTC--CSCEEEESSCCSHHHHHHHHHTTCSEEEESHHHHH
T ss_pred HHHHHHHHHcCCCEEEEECCchhh-cCCcccHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCCEEEEChHHHh
Confidence 356788899999999987532211 11223455667766544 79999999999999999999999999999998764
|
| >1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00016 Score=65.34 Aligned_cols=76 Identities=26% Similarity=0.302 Sum_probs=58.7
Q ss_pred HHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 210 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
.+.++.+.++|+|.|.++...+. .......++.+.++++.. ++||++.|||++..++.+++++|||.|.+|+.++.
T Consensus 34 ~~~a~~~~~~Gad~i~v~d~~~~-~~~~~~~~~~i~~i~~~~--~iPvi~~Ggi~~~~~~~~~~~~Gad~V~lg~~~l~ 109 (252)
T 1ka9_F 34 VEAARAYDEAGADELVFLDISAT-HEERAILLDVVARVAERV--FIPLTVGGGVRSLEDARKLLLSGADKVSVNSAAVR 109 (252)
T ss_dssp HHHHHHHHHHTCSCEEEEECCSS-TTCHHHHHHHHHHHHTTC--CSCEEEESSCCSHHHHHHHHHHTCSEEEECHHHHH
T ss_pred HHHHHHHHHcCCCEEEEEcCCcc-ccCccccHHHHHHHHHhC--CCCEEEECCcCCHHHHHHHHHcCCCEEEEChHHHh
Confidence 46678889999999988742211 011233456677776654 79999999999999999999999999999998874
|
| >1p1x_A Deoxyribose-phosphate aldolase; alpha-beta barrel, TIM barrel, lyase; 0.99A {Escherichia coli} SCOP: c.1.10.1 PDB: 1jcl_A 1jcj_A* 1ktn_A 3npv_B 3npu_A 3npw_A 3nq2_A 3npx_A 3nq8_A 3q2d_A* 3nr0_A 3nqv_A | Back alignment and structure |
|---|
Probab=97.76 E-value=3.4e-05 Score=70.56 Aligned_cols=88 Identities=25% Similarity=0.258 Sum_probs=61.0
Q ss_pred cHHHHHHHHHhcC-CcEEEEee-----cC-HH----HHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHH-----
Q 019244 187 SWKDVKWLQTITK-LPILVKGV-----LT-AE----DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKA----- 250 (344)
Q Consensus 187 ~~~~i~~i~~~~~-~PvivK~v-----~~-~~----~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~----- 250 (344)
..++|+.+++..+ .+..+|.+ ++ .+ -++.+.++|+|+|..|+.-+ .+..+.+.+..+++.
T Consensus 119 v~~ei~~v~~a~~~~g~~lKvIlEt~~L~d~e~i~~a~~ia~eaGADfVKTSTGf~----~~gAt~e~v~lm~~~I~~~~ 194 (260)
T 1p1x_A 119 GFDLVKACKEACAAANVLLKVIIETGELKDEALIRKASEISIKAGADFIKTSTGKV----AVNATPESARIMMEVIRDMG 194 (260)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECCHHHHCSHHHHHHHHHHHHHTTCSEEECCCSCS----SCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcccCCeEEEEEecccCCcHHHHHHHHHHHHHhCCCEEEeCCCCC----CCCCCHHHHHHHHHHHHHhc
Confidence 4567888888763 24567776 23 33 24568899999999985211 122355544434433
Q ss_pred ccCCCcEEEecCCCCHHHHHHHHHcCCC
Q 019244 251 TQGRIPVFLDGGVRRGTDVFKALALGAS 278 (344)
Q Consensus 251 ~~~~~~via~GGIr~g~dv~kalalGAd 278 (344)
++.+++|-++||||+.+|+++.+.+||+
T Consensus 195 ~g~~v~VKaaGGIrt~~~al~~i~aga~ 222 (260)
T 1p1x_A 195 VEKTVGFKPAGGVRTAEDAQKYLAIADE 222 (260)
T ss_dssp CTTTCEEECBSSCCSHHHHHHHHHHHHH
T ss_pred CCCCceEEEeCCCCCHHHHHHHHHhhhh
Confidence 4568999999999999999999999886
|
| >1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00033 Score=62.61 Aligned_cols=77 Identities=26% Similarity=0.296 Sum_probs=60.5
Q ss_pred CHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 209 TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 209 ~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
..+.++.+.++|+|+|.++...+.. .......+.+.++++.. ++||++.|||++..++.+++.+|||+|.++++++.
T Consensus 35 ~~~~a~~~~~~G~d~i~v~~~~~~~-~~~~~~~~~i~~i~~~~--~ipvi~~g~i~~~~~~~~~~~~Gad~V~i~~~~~~ 111 (253)
T 1h5y_A 35 PVEMAVRYEEEGADEIAILDITAAP-EGRATFIDSVKRVAEAV--SIPVLVGGGVRSLEDATTLFRAGADKVSVNTAAVR 111 (253)
T ss_dssp HHHHHHHHHHTTCSCEEEEECCCCT-TTHHHHHHHHHHHHHHC--SSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEEeCCccc-cCCcccHHHHHHHHHhc--CCCEEEECCCCCHHHHHHHHHcCCCEEEEChHHhh
Confidence 4577889999999999987532211 11223456677777765 79999999999999999999999999999998764
|
| >1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00057 Score=61.02 Aligned_cols=98 Identities=17% Similarity=0.182 Sum_probs=67.2
Q ss_pred HHHHHHHHHhcCCcEEEEee-cCH-HHHHHHHHc--CCcEEEEcc-C-CCCCCCCchhhHHHHHHHHHHccCCCcEEEec
Q 019244 188 WKDVKWLQTITKLPILVKGV-LTA-EDARIAVQA--GAAGIIVSN-H-GARQLDYVPATIMALEEVVKATQGRIPVFLDG 261 (344)
Q Consensus 188 ~~~i~~i~~~~~~PvivK~v-~~~-~~a~~~~~~--G~d~I~v~~-~-gG~~~~~g~~~~~~l~~i~~~~~~~~~via~G 261 (344)
.+.++.+++. ++++++-.. .++ +..+...+. ++|+|.+.. + |+....+.+..++.+.++++... ++||.++|
T Consensus 103 ~~~~~~i~~~-g~~igv~~~p~t~~e~~~~~~~~~~~~d~vl~~sv~pg~~g~~~~~~~l~~i~~~~~~~~-~~pi~v~G 180 (228)
T 1h1y_A 103 QELIQSIKAK-GMRPGVSLRPGTPVEEVFPLVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKYP-SLDIEVDG 180 (228)
T ss_dssp HHHHHHHHHT-TCEEEEEECTTSCGGGGHHHHHSSSCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCT-TSEEEEES
T ss_pred HHHHHHHHHc-CCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEeecCCCCcccCCHHHHHHHHHHHHhcC-CCCEEEEC
Confidence 3457777664 666665432 233 334455555 999998853 2 22222234455667777777653 79999999
Q ss_pred CCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 262 GVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 262 GIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
||.. +++.+++..|||.+.+||.++.
T Consensus 181 GI~~-~ni~~~~~aGaD~vvvGsai~~ 206 (228)
T 1h1y_A 181 GLGP-STIDVAASAGANCIVAGSSIFG 206 (228)
T ss_dssp SCST-TTHHHHHHHTCCEEEESHHHHT
T ss_pred CcCH-HHHHHHHHcCCCEEEECHHHHC
Confidence 9997 8898999999999999999874
|
| >3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00014 Score=66.97 Aligned_cols=70 Identities=17% Similarity=0.151 Sum_probs=56.8
Q ss_pred HHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 213 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 213 a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
+..+.+.|...|.+...+ .+...+.+.++++.+...+||++.|||||.+|+.+++.+|||.|.+|+.++.
T Consensus 192 a~~gad~G~~lV~LD~~~------~~v~~e~V~~I~~~~~~~iPV~vGGGIrs~Eda~~ll~aGAD~VVVGSAav~ 261 (286)
T 3vk5_A 192 LHVARAFGFHMVYLYSRN------EHVPPEVVRHFRKGLGPDQVLFVSGNVRSGRQVTEYLDSGADYVGFAGALEQ 261 (286)
T ss_dssp HHHHHHTTCSEEEEECSS------SCCCHHHHHHHHHHSCTTCEEEEESSCCSHHHHHHHHHTTCSEEEESGGGSS
T ss_pred HHHHHHcCCCEEEEcCCC------CcCCHHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHHcCCCEEEECchhhc
Confidence 345567888899888533 2345678888888764369999999999999999999999999999999864
|
| >2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00024 Score=66.32 Aligned_cols=86 Identities=20% Similarity=0.211 Sum_probs=66.2
Q ss_pred HHHHHHHHhcC--CcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHcc---CCCcEEEecCC
Q 019244 189 KDVKWLQTITK--LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ---GRIPVFLDGGV 263 (344)
Q Consensus 189 ~~i~~i~~~~~--~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~---~~~~via~GGI 263 (344)
+.++.+++..+ +++++ ++.+.++++.+.++|+|+|.+++. ++ +.+.++++.++ .+++|.++|||
T Consensus 185 ~ai~~~r~~~~~~~~i~v-ev~tlee~~~A~~aGaD~I~ld~~-------~~---~~l~~~v~~l~~~~~~~~I~ASGGI 253 (299)
T 2jbm_A 185 KAVRAARQAADFALKVEV-ECSSLQEAVQAAEAGADLVLLDNF-------KP---EELHPTATVLKAQFPSVAVEASGGI 253 (299)
T ss_dssp HHHHHHHHHHTTTSCEEE-EESSHHHHHHHHHTTCSEEEEESC-------CH---HHHHHHHHHHHHHCTTSEEEEESSC
T ss_pred HHHHHHHHhCCcCCeEEE-ecCCHHHHHHHHHcCCCEEEECCC-------CH---HHHHHHHHHhhccCCCeeEEEECCC
Confidence 45777877764 46665 678899999999999999999863 23 33444333332 35999999999
Q ss_pred CCHHHHHHHHHcCCCEEEEchHH
Q 019244 264 RRGTDVFKALALGASGIFIGRPV 286 (344)
Q Consensus 264 r~g~dv~kalalGAd~V~ig~~~ 286 (344)
+...+.+....|||.+.+|+.+
T Consensus 254 -t~~ni~~~~~aGaD~i~vGs~i 275 (299)
T 2jbm_A 254 -TLDNLPQFCGPHIDVISMGMLT 275 (299)
T ss_dssp -CTTTHHHHCCTTCCEEECTHHH
T ss_pred -CHHHHHHHHHCCCCEEEEChhh
Confidence 8999999999999999999854
|
| >4a3u_A NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET: FMN; 1.70A {Zymomonas mobilis} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.0013 Score=62.98 Aligned_cols=100 Identities=15% Similarity=-0.001 Sum_probs=66.9
Q ss_pred CcHHHHHHHHHhcC-CcEEEEeecC-----------H----HHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHH
Q 019244 186 LSWKDVKWLQTITK-LPILVKGVLT-----------A----EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVK 249 (344)
Q Consensus 186 ~~~~~i~~i~~~~~-~PvivK~v~~-----------~----~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~ 249 (344)
|..+.++.||+.++ -+|.+|...+ . ..++.+.+.|++.+.++...-..............++++
T Consensus 204 f~~Eii~avr~~vg~~~v~vRls~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~ik~ 283 (358)
T 4a3u_A 204 LLKDVTERVIATIGKERTAVRLSPNGEIQGTVDSHPEQVFIPAAKMLSDLDIAFLGMREGAVDGTFGKTDQPKLSPEIRK 283 (358)
T ss_dssp HHHHHHHHHHHHHCGGGEEEEECCSSCBTTBCCSSTHHHHHHHHHHHHHHTCSEEEEECCBTTCSSSBCSSCCCHHHHHH
T ss_pred HHHHHHHHHHHHcCccceEEEeccCcccCCCcccchHHHHHHHHHhhhccCccccccccccccCcccccccHHHHHHHHH
Confidence 45678999999884 5688887511 1 225677889999999875321111000011122344555
Q ss_pred HccCCCcEEEecCCCCHHHHHHHHHcC-CCEEEEchHHHH
Q 019244 250 ATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 288 (344)
Q Consensus 250 ~~~~~~~via~GGIr~g~dv~kalalG-Ad~V~ig~~~l~ 288 (344)
.. ..||+ .||+.+.+++.++|+-| ||+|++||+++.
T Consensus 284 ~~--~~~v~-~~g~~~~~~ae~~l~~G~aD~V~~gR~~la 320 (358)
T 4a3u_A 284 VF--KPPLV-LNQDYTFETAQAALDSGVADAISFGRPFIG 320 (358)
T ss_dssp HC--CSCEE-EESSCCHHHHHHHHHHTSCSEEEESHHHHH
T ss_pred hc--CCcEE-EeCCCCHHHHHHHHHcCCceEeHhhHHHHh
Confidence 54 45555 58889999999999999 999999999985
|
| >1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00031 Score=62.64 Aligned_cols=47 Identities=21% Similarity=0.339 Sum_probs=37.2
Q ss_pred HHHHHHHHHHcc---CCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 241 IMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 241 ~~~l~~i~~~~~---~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
++.+.++++... .++|++++|||+ .+++.+++..|||+|.+||+++.
T Consensus 163 ~~~i~~l~~~~~~~~~~~pi~v~GGI~-~~n~~~~~~aGad~vvvgSaI~~ 212 (230)
T 1rpx_A 163 VKKISDLRKICAERGLNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFG 212 (230)
T ss_dssp HHHHHHHHHHHHHHTCCCEEEEESSCC-TTTHHHHHHHTCCEEEESHHHHT
T ss_pred HHHHHHHHHHHHhcCCCceEEEECCCC-HHHHHHHHHcCCCEEEEChhhhC
Confidence 344555555432 268999999999 78998999999999999999874
|
| >1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00054 Score=63.49 Aligned_cols=86 Identities=26% Similarity=0.320 Sum_probs=67.7
Q ss_pred HHHHHHHhcC--CcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHH
Q 019244 190 DVKWLQTITK--LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 267 (344)
Q Consensus 190 ~i~~i~~~~~--~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~ 267 (344)
.++..|+..+ .+|.+ .+.+.++++.+.++|+|+|.+++. ..+.++++.+.+++++|+.++|||. .+
T Consensus 185 av~~ar~~~~~~~~IgV-ev~t~eea~eA~~aGaD~I~ld~~----------~~~~~k~av~~v~~~ipi~AsGGIt-~e 252 (286)
T 1x1o_A 185 AVRRAKARAPHYLKVEV-EVRSLEELEEALEAGADLILLDNF----------PLEALREAVRRVGGRVPLEASGNMT-LE 252 (286)
T ss_dssp HHHHHHHHSCTTSCEEE-EESSHHHHHHHHHHTCSEEEEESC----------CHHHHHHHHHHHTTSSCEEEESSCC-HH
T ss_pred HHHHHHHhCCCCCEEEE-EeCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhCCCCeEEEEcCCC-HH
Confidence 5778887763 46665 678899999999999999999763 2234555555555579999999996 89
Q ss_pred HHHHHHHcCCCEEEEchHHH
Q 019244 268 DVFKALALGASGIFIGRPVV 287 (344)
Q Consensus 268 dv~kalalGAd~V~ig~~~l 287 (344)
.+.+..+.|+|.+.+|+...
T Consensus 253 ni~~~a~tGvD~IsVgs~~~ 272 (286)
T 1x1o_A 253 RAKAAAEAGVDYVSVGALTH 272 (286)
T ss_dssp HHHHHHHHTCSEEECTHHHH
T ss_pred HHHHHHHcCCCEEEEcHHHc
Confidence 99999999999999987543
|
| >2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00042 Score=62.12 Aligned_cols=76 Identities=25% Similarity=0.247 Sum_probs=59.5
Q ss_pred CHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 209 TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 209 ~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
..+.++.+.++|+|.|.+..--+.. ...+.. ..+.++++.. ++|+++.|||++..++.+++++|||.|.+|+..+.
T Consensus 33 ~~~~a~~~~~~Gad~i~v~~~d~~~-~~~~~~-~~i~~i~~~~--~ipv~v~ggi~~~~~~~~~l~~Gad~V~lg~~~l~ 108 (244)
T 2y88_A 33 AVDAALGWQRDGAEWIHLVDLDAAF-GRGSNH-ELLAEVVGKL--DVQVELSGGIRDDESLAAALATGCARVNVGTAALE 108 (244)
T ss_dssp HHHHHHHHHHTTCSEEEEEEHHHHT-TSCCCH-HHHHHHHHHC--SSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEEcCcccc-cCCChH-HHHHHHHHhc--CCcEEEECCCCCHHHHHHHHHcCCCEEEECchHhh
Confidence 3467888999999999997421111 112334 7778887766 79999999999999999999999999999998764
|
| >1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1 | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00031 Score=63.78 Aligned_cols=114 Identities=21% Similarity=0.279 Sum_probs=78.8
Q ss_pred HHHHHHHHH-cC-Ccc-----------ccCCHHHHHHHHHHHHHcCCcEEEeccCCccccccHHHHHhhcCCCCcccccc
Q 019244 91 YATARAASA-AG-TIM-----------VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN 157 (344)
Q Consensus 91 ~~lA~aA~~-~g-~~~-----------~~~d~~~~~~~i~~a~~ag~~~l~~tvd~~~~g~r~~~~~~~~~~~~g~~~~~ 157 (344)
..+|+-|++ .+ +-. .+.|+..+.+..++..+.|++.+.++.|.|..++|..+....+-.|.+.
T Consensus 90 v~~a~lare~~~~~~~iKlEv~~d~~~llpD~~~tv~aa~~L~~~Gf~Vlpy~~dd~~~akrl~~~G~~aVmPlg~---- 165 (265)
T 1wv2_A 90 VRTCRLARELLDGHNLVKLEVLADQKTLFPNVVETLKAAEQLVKDGFDVMVYTSDDPIIARQLAEIGCIAVMPLAG---- 165 (265)
T ss_dssp HHHHHHHHTTTTSCCEEEECCBSCTTTCCBCHHHHHHHHHHHHTTTCEEEEEECSCHHHHHHHHHSCCSEEEECSS----
T ss_pred HHHHHHHHHHcCCCCeEEEEeecCccccCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhCCCEEEeCCc----
Confidence 467888888 43 333 2467777666777777889999988889898877765432111011100
Q ss_pred cccccccccccccchhhHHHHhhcCCCCCcHHHHHHHHHhcCCcEEEEe-ecCHHHHHHHHHcCCcEEEEcc
Q 019244 158 FQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSN 228 (344)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~PvivK~-v~~~~~a~~~~~~G~d~I~v~~ 228 (344)
.+.. +.+-.+++.|+.+++..++|||+.+ +.+++++..+.+.|+|+|.|..
T Consensus 166 -------------------pIGs-G~Gi~~~~lI~~I~e~~~vPVI~eGGI~TPsDAa~AmeLGAdgVlVgS 217 (265)
T 1wv2_A 166 -------------------LIGS-GLGICNPYNLRIILEEAKVPVLVDAGVGTASDAAIAMELGCEAVLMNT 217 (265)
T ss_dssp -------------------STTC-CCCCSCHHHHHHHHHHCSSCBEEESCCCSHHHHHHHHHHTCSEEEESH
T ss_pred -------------------cCCC-CCCcCCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHHcCCCEEEECh
Confidence 0000 1122368889999998899999984 6899999999999999999954
|
| >4eiv_A Deoxyribose-phosphate aldolase; chemotherapy, brain cysts, bradyzoite, structural genomics, for structural genomics of infectious diseases; 1.37A {Toxoplasma gondii} PDB: 3qyq_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00048 Score=63.56 Aligned_cols=86 Identities=19% Similarity=0.107 Sum_probs=57.3
Q ss_pred HHHHHHHHHhcCCcEEEEee-----cC-HHH----HHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHc------
Q 019244 188 WKDVKWLQTITKLPILVKGV-----LT-AED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT------ 251 (344)
Q Consensus 188 ~~~i~~i~~~~~~PvivK~v-----~~-~~~----a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~------ 251 (344)
.++|+.+++..+ +.++|.+ ++ .+. .+.+.++|+|+|..|+.-+ .+..+++.+.-+++.+
T Consensus 138 ~~eI~~v~~a~~-~~~lKVIlEt~~Lt~~e~i~~A~~ia~~AGADFVKTSTGf~----~~gAT~edV~lM~~~v~~~~~~ 212 (297)
T 4eiv_A 138 RLLVSEVKKVVG-PKTLKVVLSGGELQGGDIISRAAVAALEGGADFLQTSSGLG----ATHATMFTVHLISIALREYMVR 212 (297)
T ss_dssp HHHHHHHHHHHT-TSEEEEECCSSCCCCHHHHHHHHHHHHHHTCSEEECCCSSS----SCCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhc-CCceEEEEecccCCcHHHHHHHHHHHHHhCCCEEEcCCCCC----CCCCCHHHHHHHHHHHHHHhcc
Confidence 356888888875 6678887 33 332 3567899999999986322 1123444333333333
Q ss_pred ----------------cCCCcEEEe-cCCCCHHHHHHHHHcCCC
Q 019244 252 ----------------QGRIPVFLD-GGVRRGTDVFKALALGAS 278 (344)
Q Consensus 252 ----------------~~~~~via~-GGIr~g~dv~kalalGAd 278 (344)
++++.|-++ ||||+.+|+.+.+.+..+
T Consensus 213 ~~~~~~~~~~~~~~~tg~~vgvKAs~GGIrt~e~A~~~i~~~~e 256 (297)
T 4eiv_A 213 ENERIRVEGINREGAAVRCIGIKIEVGDVHMAETADFLMQMIFE 256 (297)
T ss_dssp ------------------CCEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccCCceeEEecCCCCCCHHHHHHHHHHHHH
Confidence 358999999 999999999999994433
|
| >3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00045 Score=63.88 Aligned_cols=85 Identities=15% Similarity=0.223 Sum_probs=67.7
Q ss_pred HHHHHHHhc-CCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHH
Q 019244 190 DVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 268 (344)
Q Consensus 190 ~i~~i~~~~-~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~d 268 (344)
.++..++.. .+|+.| ++-|.++++.+.++|+|.|.++|. +.+.+.++.+.+++++++.+||||. .+.
T Consensus 188 Av~~ar~~~~~~~IeV-Ev~tl~ea~eAl~aGaD~I~LDn~----------~~~~l~~av~~~~~~v~ieaSGGIt-~~~ 255 (287)
T 3tqv_A 188 AVTKAKKLDSNKVVEV-EVTNLDELNQAIAAKADIVMLDNF----------SGEDIDIAVSIARGKVALEVSGNID-RNS 255 (287)
T ss_dssp HHHHHHHHCTTSCEEE-EESSHHHHHHHHHTTCSEEEEESC----------CHHHHHHHHHHHTTTCEEEEESSCC-TTT
T ss_pred HHHHHHhhCCCCcEEE-EeCCHHHHHHHHHcCCCEEEEcCC----------CHHHHHHHHHhhcCCceEEEECCCC-HHH
Confidence 466666654 467776 788999999999999999999873 2355666666666689999999995 788
Q ss_pred HHHHHHcCCCEEEEchHH
Q 019244 269 VFKALALGASGIFIGRPV 286 (344)
Q Consensus 269 v~kalalGAd~V~ig~~~ 286 (344)
+.++...|+|.+.+|...
T Consensus 256 i~~~a~tGVD~IsvGalt 273 (287)
T 3tqv_A 256 IVAIAKTGVDFISVGAIT 273 (287)
T ss_dssp HHHHHTTTCSEEECSHHH
T ss_pred HHHHHHcCCCEEEEChhh
Confidence 888888999999998754
|
| >1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00023 Score=63.91 Aligned_cols=49 Identities=18% Similarity=0.325 Sum_probs=39.7
Q ss_pred hhHHHHHHHHHHcc---CCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 239 ATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 239 ~~~~~l~~i~~~~~---~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
..++.+.++++... .++||.++|||.. +++.++...|||.+.+||.++.
T Consensus 155 ~~~~~i~~lr~~~~~~~~~~~I~v~GGI~~-~~~~~~~~aGad~vvvGSai~~ 206 (230)
T 1tqj_A 155 EVLPKIRALRQMCDERGLDPWIEVDGGLKP-NNTWQVLEAGANAIVAGSAVFN 206 (230)
T ss_dssp GGHHHHHHHHHHHHHHTCCCEEEEESSCCT-TTTHHHHHHTCCEEEESHHHHT
T ss_pred HHHHHHHHHHHHHHhcCCCCcEEEECCcCH-HHHHHHHHcCCCEEEECHHHHC
Confidence 34566777766542 2699999999997 8899999999999999999874
|
| >3glc_A Aldolase LSRF; TIM barrel, lyase, schiff base; HET: R5P; 2.50A {Escherichia coli} PDB: 3gnd_A* 3gkf_O | Back alignment and structure |
|---|
Probab=97.51 E-value=0.0011 Score=61.69 Aligned_cols=88 Identities=26% Similarity=0.389 Sum_probs=60.4
Q ss_pred HHHHHHHH---hcCCcEEEEe------ecCHH----HHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCC
Q 019244 189 KDVKWLQT---ITKLPILVKG------VLTAE----DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRI 255 (344)
Q Consensus 189 ~~i~~i~~---~~~~PvivK~------v~~~~----~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~ 255 (344)
+++.++++ .+++|+++=- ..+++ .++.+.++|+|+|.++-.+ +.+.++.+.. ++
T Consensus 158 ~~i~~v~~~a~~~GlpvIie~~~G~~~~~d~e~i~~aariA~elGAD~VKt~~t~-----------e~~~~vv~~~--~v 224 (295)
T 3glc_A 158 KNIIQLVDAGMKVGMPTMAVTGVGKDMVRDQRYFSLATRIAAEMGAQIIKTYYVE-----------KGFERIVAGC--PV 224 (295)
T ss_dssp HHHHHHHHHHHTTTCCEEEEECC----CCSHHHHHHHHHHHHHTTCSEEEEECCT-----------TTHHHHHHTC--SS
T ss_pred HHHHHHHHHHHHcCCEEEEECCCCCccCCCHHHHHHHHHHHHHhCCCEEEeCCCH-----------HHHHHHHHhC--CC
Confidence 34444444 3579988711 12333 4677889999999996221 2355666544 79
Q ss_pred cEEEecCCCCHH-----HHHHHHHcCCCEEEEchHHHHH
Q 019244 256 PVFLDGGVRRGT-----DVFKALALGASGIFIGRPVVYS 289 (344)
Q Consensus 256 ~via~GGIr~g~-----dv~kalalGAd~V~ig~~~l~~ 289 (344)
||+++||+.... .+.+++.+||+.+.+||.++..
T Consensus 225 PVv~~GG~~~~~~~~l~~v~~ai~aGA~Gv~vGRnI~q~ 263 (295)
T 3glc_A 225 PIVIAGGKKLPEREALEMCWQAIDQGASGVDMGRNIFQS 263 (295)
T ss_dssp CEEEECCSCCCHHHHHHHHHHHHHTTCSEEEESHHHHTS
T ss_pred cEEEEECCCCCHHHHHHHHHHHHHhCCeEEEeHHHHhcC
Confidence 999999999542 4556778999999999998753
|
| >3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6, mechanism, cytoplasm, glycosyltransferase, nucleus; 1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A* 3c2v_A* 3c2r_A* | Back alignment and structure |
|---|
Probab=97.51 E-value=9.2e-05 Score=69.05 Aligned_cols=86 Identities=19% Similarity=0.168 Sum_probs=54.5
Q ss_pred HHHHHHHHhcC--CcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCC------CcEEEe
Q 019244 189 KDVKWLQTITK--LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGR------IPVFLD 260 (344)
Q Consensus 189 ~~i~~i~~~~~--~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~------~~via~ 260 (344)
+.++.+++..+ +++++ ++.+.++++.+.++|+|+|.+++.+ .+.+.++++.+.+. ++|.++
T Consensus 187 ~ai~~~r~~~~~~~~i~v-ev~tlee~~~A~~aGaD~I~ld~~~----------~~~l~~~v~~l~~~~~g~~~v~I~AS 255 (294)
T 3c2e_A 187 NAVKNARAVCGFAVKIEV-ECLSEDEATEAIEAGADVIMLDNFK----------GDGLKMCAQSLKNKWNGKKHFLLECS 255 (294)
T ss_dssp HHHHHHHHHHCTTSCEEE-ECSSSHHHHHHHHHTCSEEECCC-------------------------------CCEEEEE
T ss_pred HHHHHHHHhcCcCCeEEE-ecCCHHHHHHHHHcCCCEEEECCCC----------HHHHHHHHHHhcccccCCCCeEEEEE
Confidence 45777877764 45665 6778899999999999999997632 23344444444333 999999
Q ss_pred cCCCCHHHHHHHHHcCCCEEEEchHH
Q 019244 261 GGVRRGTDVFKALALGASGIFIGRPV 286 (344)
Q Consensus 261 GGIr~g~dv~kalalGAd~V~ig~~~ 286 (344)
||| +.+.+.+....|||.+.+|+.+
T Consensus 256 GGI-t~~ni~~~~~~GvD~i~vGs~i 280 (294)
T 3c2e_A 256 GGL-NLDNLEEYLCDDIDIYSTSSIH 280 (294)
T ss_dssp CCC-CC------CCCSCSEEECGGGT
T ss_pred CCC-CHHHHHHHHHcCCCEEEEechh
Confidence 999 8999999999999999999874
|
| >3tjl_A NADPH dehydrogenase; OLD yellow enzyme, flavin mononucleotide, TIM barrel, NADPH oxidoreductase, enone reductase; HET: FMN; 1.50A {Scheffersomyces stipitis cbs 6054} PDB: 3upw_A* 4df2_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=8.9e-05 Score=72.11 Aligned_cols=99 Identities=17% Similarity=0.025 Sum_probs=68.1
Q ss_pred HHHHHHHHHhcC-CcEEEEeec-----------C--------HHHHHHH---HHcC--CcEEEEccCCC-CCCCCchh-h
Q 019244 188 WKDVKWLQTITK-LPILVKGVL-----------T--------AEDARIA---VQAG--AAGIIVSNHGA-RQLDYVPA-T 240 (344)
Q Consensus 188 ~~~i~~i~~~~~-~PvivK~v~-----------~--------~~~a~~~---~~~G--~d~I~v~~~gG-~~~~~g~~-~ 240 (344)
.+.++.+|+.++ -||.+|... + .+.++.+ .+.| +|+|.|+.... .+.+..+. .
T Consensus 222 ~ei~~av~~~~~~~~v~~r~~~~~~~~g~~~~~d~~~~~~~~~~l~~~L~~~~~~G~~l~ylhv~~~~~~~~~~~~~~~~ 301 (407)
T 3tjl_A 222 LELIDHLSTIVGADKIGIRISPWATFQNMKAHKDTVHPLTTFSYLVHELQQRADKGQGIAYISVVEPRVSGNVDVSEEDQ 301 (407)
T ss_dssp HHHHHHHHHHHCGGGEEEEECTTCCGGGCCGGGSSSCHHHHHHHHHHHHHHHHHTTCCCSEEEEECTTEETTEECCGGGC
T ss_pred HHHHHHHHHHhCCCeEEEEECcccccCCCcccccccccHHHHHHHHHHHHhHhhcCCceeEEEEEccccCCCCcCCccch
Confidence 456889998885 589999862 2 1235677 7889 99999974211 11111111 1
Q ss_pred HHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHc---C-CCEEEEchHHHH
Q 019244 241 IMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL---G-ASGIFIGRPVVY 288 (344)
Q Consensus 241 ~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalal---G-Ad~V~ig~~~l~ 288 (344)
...+..+++.. ++|||+.|||.+..|+.+++.. | ||+|++||+++.
T Consensus 302 ~~~~~~ir~~~--~~PvI~~Ggi~~~~dA~~~i~~~~~g~aDlVa~GR~~ia 351 (407)
T 3tjl_A 302 AGDNEFVSKIW--KGVILKAGNYSYDAPEFKTLKEDIADKRTLVGFSRYFTS 351 (407)
T ss_dssp CCCSHHHHHHC--CSEEEEESCGGGGTTTTHHHHHHHTTSSEEEECSHHHHH
T ss_pred hHHHHHHHHHh--CCCEEecCCCCCHHHHHHHHHhhccCCCeEEEeChhhhh
Confidence 12344555555 6899999999999988888776 5 999999999985
|
| >2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00017 Score=65.65 Aligned_cols=76 Identities=14% Similarity=0.142 Sum_probs=58.8
Q ss_pred CHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHH
Q 019244 209 TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 287 (344)
Q Consensus 209 ~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l 287 (344)
..+.++.+.++|++.|.++...+... ......+.+.++++.. ++||++.|||++..|+.+++.+|||.|.+|+.++
T Consensus 32 ~~~~a~~~~~~Ga~~i~v~d~~~~~~-~~g~~~~~i~~i~~~~--~iPvi~~ggi~~~~~i~~~~~~Gad~v~lg~~~~ 107 (266)
T 2w6r_A 32 LRDWVVEVEKRGAGEILLTSIDRDGT-KSGYDTEMIRFVRPLT--TLPIIASGGAGKMEHFLEAFLAGADKALAASVFH 107 (266)
T ss_dssp HHHHHHHHHHHTCSEEEEEETTTSSC-SSCCCHHHHHHHGGGC--CSCEEEESCCCSTHHHHHHHHHTCSEEECCCCC-
T ss_pred HHHHHHHHHHCCCCEEEEEecCcccC-CCcccHHHHHHHHHhc--CCCEEEECCCCCHHHHHHHHHcCCcHhhhhHHHH
Confidence 45678899999999999965221111 1123567777776654 7999999999999999999999999999999877
|
| >3s1x_A Probable transaldolase; alpha-beta barrel, conformational selection, domain swapping transferase; HET: I22; 1.65A {Thermoplasma acidophilum} PDB: 3s1u_A* 3s1v_A* 3s0c_A* 3s1w_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=0.0014 Score=58.41 Aligned_cols=116 Identities=16% Similarity=0.187 Sum_probs=83.3
Q ss_pred cHHH---HHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHc---cCCCcEEEe
Q 019244 187 SWKD---VKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLD 260 (344)
Q Consensus 187 ~~~~---i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~---~~~~~via~ 260 (344)
+|+- ++.+.+. ++++-+=.+.|..+|..+.++|+++|-. .-||-.|++.+.+..+.++.+.. +.+..|++.
T Consensus 90 T~eGl~A~~~L~~~-GI~vn~TlifS~~QA~~Aa~AGa~yISP--fvgRi~d~g~dG~~~v~~i~~~~~~~~~~T~IlaA 166 (223)
T 3s1x_A 90 TEDGLRAIKTLSSE-HINTNCTLVFNPIQALLAAKAGVTYVSP--FVGRLDDIGEDGMQIIDMIRTIFNNYIIKTQILVA 166 (223)
T ss_dssp SHHHHHHHHHHHHT-TCCEEEEEECSHHHHHHHHHTTCSEEEE--BSHHHHHTTSCTHHHHHHHHHHHHHTTCCSEEEEB
T ss_pred CHHHHHHHHHHHHC-CCcEEEEEeCCHHHHHHHHHcCCeEEEe--ecchHhhcCCCHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 5654 4444443 8999888899999999999999998855 45665566655566666665543 335666664
Q ss_pred cCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcC--hHHHHHHHHHHH
Q 019244 261 GGVRRGTDVFKALALGASGIFIGRPVVYSLAAEG--EKGVRRVLEMLR 306 (344)
Q Consensus 261 GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G--~~~v~~~l~~l~ 306 (344)
.+|+..++.++..+|||.+-+.-.++..+..+- ..|++++.+.|.
T Consensus 167 -S~Rn~~~v~~aa~~G~d~~Tip~~vl~~l~~hpltd~~~~~F~~Dw~ 213 (223)
T 3s1x_A 167 -SIRNPIHVLRSAVIGADVVTVPFNVLKSLMKHPKTDEGLAKFLEDWK 213 (223)
T ss_dssp -SCCSHHHHHHHHHHTCSEEEECHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred -eCCCHHHHHHHHHcCCCEEEeCHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 599999999999999999999988887765321 245666666554
|
| >3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00026 Score=62.56 Aligned_cols=80 Identities=16% Similarity=0.132 Sum_probs=58.3
Q ss_pred ecCHHHHHHHHHcCCcEEEEccCC--CCCCCC-chhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 019244 207 VLTAEDARIAVQAGAAGIIVSNHG--ARQLDY-VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 283 (344)
Q Consensus 207 v~~~~~a~~~~~~G~d~I~v~~~g--G~~~~~-g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig 283 (344)
+.+++++..+. .|+|+|.++.-- .+..+. .+..++.+.++.+.+..++||++.|||. .+++.+++.+||++|.++
T Consensus 95 ~~t~~e~~~A~-~GaDyv~~g~vf~t~sk~~~~~~~g~~~l~~~~~~~~~~iPviaiGGI~-~~nv~~~~~~Ga~gVav~ 172 (210)
T 3ceu_A 95 CHSVEEVKNRK-HFYDYVFMSPIYDSISKVNYYSTYTAEELREAQKAKIIDSKVMALGGIN-EDNLLEIKDFGFGGAVVL 172 (210)
T ss_dssp ECSHHHHHTTG-GGSSEEEECCCC---------CCCCHHHHHHHHHTTCSSTTEEEESSCC-TTTHHHHHHTTCSEEEES
T ss_pred cCCHHHHHHHh-hCCCEEEECCcCCCCCCCCCCCCCCHHHHHHHHHhcCCCCCEEEECCCC-HHHHHHHHHhCCCEEEEh
Confidence 57899999888 999999975421 110111 1224566777665421279999999998 899999999999999999
Q ss_pred hHHHH
Q 019244 284 RPVVY 288 (344)
Q Consensus 284 ~~~l~ 288 (344)
+.++.
T Consensus 173 s~i~~ 177 (210)
T 3ceu_A 173 GDLWN 177 (210)
T ss_dssp HHHHT
T ss_pred HHhHc
Confidence 99864
|
| >2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9 | Back alignment and structure |
|---|
Probab=97.48 E-value=0.0013 Score=60.31 Aligned_cols=97 Identities=16% Similarity=0.233 Sum_probs=65.3
Q ss_pred ecCHHHHHHHHHcCCcEEEEccC---CCC---CCCCchhh-HHHHHHHH---HHccCCCcEEEec-CCCCHHHHHHHHHc
Q 019244 207 VLTAEDARIAVQAGAAGIIVSNH---GAR---QLDYVPAT-IMALEEVV---KATQGRIPVFLDG-GVRRGTDVFKALAL 275 (344)
Q Consensus 207 v~~~~~a~~~~~~G~d~I~v~~~---gG~---~~~~g~~~-~~~l~~i~---~~~~~~~~via~G-GIr~g~dv~kalal 275 (344)
+.++++++.+.++|+|.|++.-. ||. ........ .+.+.++. +.+.+++-|+.-| ||.+++|+.+++.+
T Consensus 170 v~~~eeA~amA~agpDiI~~h~glT~gglIG~~~avs~~~~~e~i~~i~~a~~~vnpdvivLc~gGpIstpeDv~~~l~~ 249 (286)
T 2p10_A 170 VFSPEDAVAMAKAGADILVCHMGLTTGGAIGARSGKSMDDCVSLINECIEAARTIRDDIIILSHGGPIANPEDARFILDS 249 (286)
T ss_dssp ECSHHHHHHHHHHTCSEEEEECSCC---------CCCHHHHHHHHHHHHHHHHHHCSCCEEEEESTTCCSHHHHHHHHHH
T ss_pred cCCHHHHHHHHHcCCCEEEECCCCCCCCcccCCCcccHHHhHHHHHHHHHHHHHhCCCcEEEecCCCCCCHHHHHHHHhc
Confidence 47999999999999999998422 221 00111111 23333333 3345577777666 99999999999999
Q ss_pred --CCCEEEEchHHHHHhhhcChHHHHHHHHHHHHHHH
Q 019244 276 --GASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFE 310 (344)
Q Consensus 276 --GAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~el~ 310 (344)
|++.+..++.+... . ++..+..+.++++
T Consensus 250 t~G~~G~~gASsier~------p-~e~ai~~~~~~fk 279 (286)
T 2p10_A 250 CQGCHGFYGASSMERL------P-AEEAIRSQTLAFK 279 (286)
T ss_dssp CTTCCEEEESHHHHHH------H-HHHHHHHHHHHHH
T ss_pred CCCccEEEeehhhhcC------C-HHHHHHHHHHHHH
Confidence 99999999998774 2 4555666665554
|
| >1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=97.48 E-value=0.002 Score=64.00 Aligned_cols=68 Identities=22% Similarity=0.297 Sum_probs=53.8
Q ss_pred HHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 019244 210 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 283 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig 283 (344)
.+.+..+.++|+|.|.+....|. ....++.+.++++..+ ++||++ |++.+.+++.++..+|||++.++
T Consensus 239 ~~~a~~l~~aGvd~v~i~~~~G~----~~~~~e~i~~i~~~~p-~~pvi~-g~~~t~e~a~~l~~~G~d~I~v~ 306 (494)
T 1vrd_A 239 MERVEKLVKAGVDVIVIDTAHGH----SRRVIETLEMIKADYP-DLPVVA-GNVATPEGTEALIKAGADAVKVG 306 (494)
T ss_dssp HHHHHHHHHTTCSEEEECCSCCS----SHHHHHHHHHHHHHCT-TSCEEE-EEECSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHhCCCEEEEEecCCc----hHHHHHHHHHHHHHCC-CceEEe-CCcCCHHHHHHHHHcCCCEEEEc
Confidence 57788999999999999653231 1236677888887764 588887 77899999999999999999984
|
| >1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A | Back alignment and structure |
|---|
Probab=97.47 E-value=0.0005 Score=61.76 Aligned_cols=75 Identities=25% Similarity=0.272 Sum_probs=58.3
Q ss_pred HHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 210 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
.+.++.+.++|+|.|.+...-+.. ...... ..+.++++.. ++|+++.|||++..++.+++.+|||.|.+|+..+.
T Consensus 35 ~~~a~~~~~~Gad~i~v~~~d~~~-~~~~~~-~~i~~i~~~~--~ipv~v~ggI~~~~~~~~~l~~Gad~V~lg~~~l~ 109 (244)
T 1vzw_A 35 LEAALAWQRSGAEWLHLVDLDAAF-GTGDNR-ALIAEVAQAM--DIKVELSGGIRDDDTLAAALATGCTRVNLGTAALE 109 (244)
T ss_dssp HHHHHHHHHTTCSEEEEEEHHHHH-TSCCCH-HHHHHHHHHC--SSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHH
T ss_pred HHHHHHHHHcCCCEEEEecCchhh-cCCChH-HHHHHHHHhc--CCcEEEECCcCCHHHHHHHHHcCCCEEEECchHhh
Confidence 456788899999999986521110 112334 6777777765 79999999999999999999999999999997764
|
| >3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00081 Score=60.24 Aligned_cols=65 Identities=14% Similarity=0.132 Sum_probs=51.8
Q ss_pred HHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 216 AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 216 ~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
+.-.|...|.+.. .|+ ....+.+.++++.+. ++||++-|||++++++.+++ .|||.|.+|+.+..
T Consensus 149 a~~~g~~~VYld~-sG~-----~~~~~~i~~i~~~~~-~~Pv~vGGGI~t~e~a~~~~-~gAD~VVVGSa~v~ 213 (228)
T 3vzx_A 149 SELLQLPIFYLEY-SGV-----LGDIEAVKKTKAVLE-TSTLFYGGGIKDAETAKQYA-EHADVIVVGNAVYE 213 (228)
T ss_dssp HHHTTCSEEEEEC-TTS-----CCCHHHHHHHHHHCS-SSEEEEESSCCSHHHHHHHH-TTCSEEEECTHHHH
T ss_pred HHHcCCCEEEecC-CCC-----cCCHHHHHHHHHhcC-CCCEEEeCCCCCHHHHHHHH-hCCCEEEEChHHhc
Confidence 3445689998877 333 125677888887652 59999999999999999887 79999999999976
|
| >1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0001 Score=66.26 Aligned_cols=75 Identities=17% Similarity=0.140 Sum_probs=57.7
Q ss_pred HHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 210 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
.+.++.+.++|+|.|.++...... ......++.+.++. .. ++||++.|||++..|+.+++.+|||.|.+|+.++.
T Consensus 33 ~~~a~~~~~~Gad~i~v~d~~~~~-~~~~~~~~~i~~i~-~~--~ipvi~~Ggi~~~~~~~~~~~~Gad~V~lg~~~l~ 107 (241)
T 1qo2_A 33 VELVEKLIEEGFTLIHVVDLSNAI-ENSGENLPVLEKLS-EF--AEHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVLE 107 (241)
T ss_dssp HHHHHHHHHTTCCCEEEEEHHHHH-HCCCTTHHHHHHGG-GG--GGGEEEESSCCSHHHHHHHHHTTCCEEEECHHHHH
T ss_pred HHHHHHHHHcCCCEEEEecccccc-cCCchhHHHHHHHH-hc--CCcEEEECCCCCHHHHHHHHHCCCCEEEECchHhh
Confidence 466888999999999987421100 01124566677766 44 69999999999999999999999999999998764
|
| >3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.0009 Score=62.73 Aligned_cols=86 Identities=21% Similarity=0.281 Sum_probs=68.2
Q ss_pred HHHHHHHHhcC-CcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHH
Q 019244 189 KDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 267 (344)
Q Consensus 189 ~~i~~i~~~~~-~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~ 267 (344)
+.++..++..+ .|+.| ++-|.++++.++++|+|.|.++|. +.+.+.++++.++++++|.+||||. ..
T Consensus 220 ~Av~~ar~~~p~~kIeV-EVdtldea~eAl~aGaD~I~LDn~----------~~~~l~~av~~l~~~v~ieaSGGIt-~~ 287 (320)
T 3paj_A 220 QAISTAKQLNPGKPVEV-ETETLAELEEAISAGADIIMLDNF----------SLEMMREAVKINAGRAALENSGNIT-LD 287 (320)
T ss_dssp HHHHHHHHHSTTSCEEE-EESSHHHHHHHHHTTCSEEEEESC----------CHHHHHHHHHHHTTSSEEEEESSCC-HH
T ss_pred HHHHHHHHhCCCCeEEE-EECCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhCCCCeEEEECCCC-HH
Confidence 35777777663 56665 688999999999999999999873 3355667666666689999999997 77
Q ss_pred HHHHHHHcCCCEEEEchHH
Q 019244 268 DVFKALALGASGIFIGRPV 286 (344)
Q Consensus 268 dv~kalalGAd~V~ig~~~ 286 (344)
.+.+....|+|.+.+|+..
T Consensus 288 ~I~~~a~tGVD~isvGalt 306 (320)
T 3paj_A 288 NLKECAETGVDYISVGALT 306 (320)
T ss_dssp HHHHHHTTTCSEEECTHHH
T ss_pred HHHHHHHcCCCEEEECcee
Confidence 7777778999999999843
|
| >3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00099 Score=59.84 Aligned_cols=101 Identities=18% Similarity=0.176 Sum_probs=68.7
Q ss_pred cHHHHHHHHHhcCCcEEEEee-cCHHH-HHHHHHcCCcEEEEccCC-C------------------------CC------
Q 019244 187 SWKDVKWLQTITKLPILVKGV-LTAED-ARIAVQAGAAGIIVSNHG-A------------------------RQ------ 233 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v-~~~~~-a~~~~~~G~d~I~v~~~g-G------------------------~~------ 233 (344)
....++.+|+.++.|+-+-.- .+++. ++.+.++|+|+|++..-- . +.
T Consensus 45 G~~~v~~lr~~~~~~~dvhLmv~dp~~~i~~~~~aGAd~itvh~Ea~~~~~~~~i~~i~~~G~k~gv~lnp~tp~~~~~~ 124 (231)
T 3ctl_A 45 SPFFVSQVKKLATKPLDCHLMVTRPQDYIAQLARAGADFITLHPETINGQAFRLIDEIRRHDMKVGLILNPETPVEAMKY 124 (231)
T ss_dssp CHHHHHHHHTTCCSCEEEEEESSCGGGTHHHHHHHTCSEEEECGGGCTTTHHHHHHHHHHTTCEEEEEECTTCCGGGGTT
T ss_pred cHHHHHHHHhccCCcEEEEEEecCHHHHHHHHHHcCCCEEEECcccCCccHHHHHHHHHHcCCeEEEEEECCCcHHHHHH
Confidence 456788888877777776653 34443 677888888888764211 1 00
Q ss_pred -------------------CCCchhhHHHHHHHHHHcc---CCCcEEEecCCCCHHHHHHHHHcCCCEEEEc-hHHHH
Q 019244 234 -------------------LDYVPATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFIG-RPVVY 288 (344)
Q Consensus 234 -------------------~~~g~~~~~~l~~i~~~~~---~~~~via~GGIr~g~dv~kalalGAd~V~ig-~~~l~ 288 (344)
..+.+..++-+.++++... .+++|.++|||. .+.+.++..+|||.+.+| |.++.
T Consensus 125 ~l~~~D~VlvmsV~pGfggQ~f~~~~l~kI~~lr~~~~~~~~~~~I~VdGGI~-~~~~~~~~~aGAd~~V~G~saif~ 201 (231)
T 3ctl_A 125 YIHKADKITVMTVDPGFAGQPFIPEMLDKLAELKAWREREGLEYEIEVDGSCN-QATYEKLMAAGADVFIVGTSGLFN 201 (231)
T ss_dssp TGGGCSEEEEESSCTTCSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEEESCCS-TTTHHHHHHHTCCEEEECTTTTGG
T ss_pred HHhcCCEEEEeeeccCcCCccccHHHHHHHHHHHHHHhccCCCceEEEECCcC-HHHHHHHHHcCCCEEEEccHHHhC
Confidence 0122345555666665542 268999999998 678889999999999999 87764
|
| >3r8r_A Transaldolase; pentose phosphate pathway, schiff bases; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0016 Score=57.63 Aligned_cols=115 Identities=20% Similarity=0.157 Sum_probs=82.4
Q ss_pred cHHH---HHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHc---cCCCcEEEe
Q 019244 187 SWKD---VKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLD 260 (344)
Q Consensus 187 ~~~~---i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~---~~~~~via~ 260 (344)
+|+- ++.+.+. ++++-+=.+.|..+|..+.++|+++|-. .-||-.|++.+.+..+.++.+.. +.+..|++.
T Consensus 88 T~eGl~A~~~L~~~-GI~vn~TlifS~~Qa~~Aa~AGa~yISP--fvgRi~d~~~dG~~~v~~i~~~~~~~~~~t~ilaA 164 (212)
T 3r8r_A 88 TSDGLKAVRALTDL-GIKTNVTLIFNANQALLAARAGATYVSP--FLGRLDDIGHNGLDLISEVKQIFDIHGLDTQIIAA 164 (212)
T ss_dssp SHHHHHHHHHHHHT-TCCEEEEEECSHHHHHHHHHHTCSEEEE--BHHHHHHTTSCHHHHHHHHHHHHHHHTCCCEEEEB
T ss_pred CHHHHHHHHHHHHC-CCcEEEEEeCCHHHHHHHHHcCCeEEEe--ccchhhhcCCChHHHHHHHHHHHHHcCCCCEEEEe
Confidence 5554 4444443 8999888899999999999999998855 44565566666666666665543 335666664
Q ss_pred cCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcC--hHHHHHHHHHH
Q 019244 261 GGVRRGTDVFKALALGASGIFIGRPVVYSLAAEG--EKGVRRVLEML 305 (344)
Q Consensus 261 GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G--~~~v~~~l~~l 305 (344)
.+|+..++.++..+|||.+-+.-.++..+..+- ..|++++.+.|
T Consensus 165 -S~R~~~~v~~~a~~G~d~~Tip~~vl~~l~~hpltd~~~~~F~~Dw 210 (212)
T 3r8r_A 165 -SIRHPQHVTEAALRGAHIGTMPLKVIHALTKHPLTDKGIEQFLADW 210 (212)
T ss_dssp -SCCSHHHHHHHHHTTCSEEEECHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred -cCCCHHHHHHHHHcCCCEEEcCHHHHHHHHcCCcHHHHHHHHHHHh
Confidence 599999999999999999999988887665321 24555555554
|
| >2czd_A Orotidine 5'-phosphate decarboxylase; pyrimidine biosynthesis, orotidine 5'-phosphate decarboxylas (ompdecase), structural genomics; 1.60A {Pyrococcus horikoshii} SCOP: c.1.2.3 PDB: 2cz5_A 2cze_A* 2czf_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00048 Score=60.65 Aligned_cols=80 Identities=18% Similarity=0.239 Sum_probs=56.7
Q ss_pred HHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCC-HHHHHHHHHcCCCEEEEchHHHHHhh
Q 019244 213 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR-GTDVFKALALGASGIFIGRPVVYSLA 291 (344)
Q Consensus 213 a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~-g~dv~kalalGAd~V~ig~~~l~~~~ 291 (344)
++.+.+.|+++++++.+ ..+.+.++++..+ .-+++++|||+. +.++.+++++|||.+.+||+++.+
T Consensus 125 ~~~a~~~G~~G~~~~~~----------~~~~i~~lr~~~~-~~~~iv~gGI~~~g~~~~~~~~aGad~vvvGr~I~~a-- 191 (208)
T 2czd_A 125 IEVANEIEPFGVIAPGT----------RPERIGYIRDRLK-EGIKILAPGIGAQGGKAKDAVKAGADYIIVGRAIYNA-- 191 (208)
T ss_dssp HHHHHHHCCSEEECCCS----------STHHHHHHHHHSC-TTCEEEECCCCSSTTHHHHHHHHTCSEEEECHHHHTS--
T ss_pred HHHHHHhCCcEEEECCC----------ChHHHHHHHHhCC-CCeEEEECCCCCCCCCHHHHHHcCCCEEEEChHHhcC--
Confidence 56778899999987643 1244556666653 334779999996 568999999999999999998863
Q ss_pred hcChHHHHHHHHHHHHHH
Q 019244 292 AEGEKGVRRVLEMLREEF 309 (344)
Q Consensus 292 ~~G~~~v~~~l~~l~~el 309 (344)
.. ..+.++.+++++
T Consensus 192 -~d---p~~~~~~l~~~i 205 (208)
T 2czd_A 192 -PN---PREAAKAIYDEI 205 (208)
T ss_dssp -SS---HHHHHHHHHHHH
T ss_pred -CC---HHHHHHHHHHHH
Confidence 12 334555565554
|
| >1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0028 Score=63.33 Aligned_cols=68 Identities=16% Similarity=0.223 Sum_probs=52.6
Q ss_pred HHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 019244 210 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 283 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig 283 (344)
.+.++.+.++|+|+|.+....|. -...++.+.++++.+ +++||++ |++.+.+++.++..+|||++.+|
T Consensus 257 ~~~a~~~~~aG~d~v~i~~~~G~----~~~~~~~i~~i~~~~-~~~pvi~-~~v~t~~~a~~l~~aGad~I~vg 324 (514)
T 1jcn_A 257 KYRLDLLTQAGVDVIVLDSSQGN----SVYQIAMVHYIKQKY-PHLQVIG-GNVVTAAQAKNLIDAGVDGLRVG 324 (514)
T ss_dssp HHHHHHHHHTTCSEEEECCSCCC----SHHHHHHHHHHHHHC-TTCEEEE-EEECSHHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHHHcCCCEEEeeccCCc----chhHHHHHHHHHHhC-CCCceEe-cccchHHHHHHHHHcCCCEEEEC
Confidence 46788899999999999543332 022457788888776 3688876 77999999999999999999773
|
| >2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0006 Score=65.93 Aligned_cols=96 Identities=22% Similarity=0.290 Sum_probs=67.2
Q ss_pred CCcHHHHHHHHHhcCCcEEEEeec--CHHHHHHHHHcCCcEEEEccCCCCCCCCch-hhHHHHHHHHHHccCCCcEEEec
Q 019244 185 SLSWKDVKWLQTITKLPILVKGVL--TAEDARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDG 261 (344)
Q Consensus 185 ~~~~~~i~~i~~~~~~PvivK~v~--~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~-~~~~~l~~i~~~~~~~~~via~G 261 (344)
+...+.++++++. +.|++++... ..+.++.+.++|+|++.+.+....+...++ .++..+.++++.. ++||++ |
T Consensus 142 ~~~~~~i~~~~~~-g~~v~~~v~~~~~~e~a~~~~~agad~i~i~~~~~~~~~~~~~~~~~~i~~l~~~~--~~pvi~-g 217 (393)
T 2qr6_A 142 ELLSERIAQVRDS-GEIVAVRVSPQNVREIAPIVIKAGADLLVIQGTLISAEHVNTGGEALNLKEFIGSL--DVPVIA-G 217 (393)
T ss_dssp HHHHHHHHHHHHT-TSCCEEEECTTTHHHHHHHHHHTTCSEEEEECSSCCSSCCCC-----CHHHHHHHC--SSCEEE-E
T ss_pred HHHHHHHHHHhhc-CCeEEEEeCCccHHHHHHHHHHCCCCEEEEeCCccccccCCCcccHHHHHHHHHhc--CCCEEE-C
Confidence 3334567777775 8899988653 345577788999999988643210111111 1444567777766 799999 9
Q ss_pred CCCCHHHHHHHHHcCCCEEEEch
Q 019244 262 GVRRGTDVFKALALGASGIFIGR 284 (344)
Q Consensus 262 GIr~g~dv~kalalGAd~V~ig~ 284 (344)
|+.+.+|+.+++.+|||+|.+|+
T Consensus 218 gi~t~e~a~~~~~~Gad~i~vg~ 240 (393)
T 2qr6_A 218 GVNDYTTALHMMRTGAVGIIVGG 240 (393)
T ss_dssp CCCSHHHHHHHHTTTCSEEEESC
T ss_pred CcCCHHHHHHHHHcCCCEEEECC
Confidence 99999999999999999999976
|
| >3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00094 Score=58.31 Aligned_cols=74 Identities=19% Similarity=0.144 Sum_probs=50.4
Q ss_pred CHHH-HHHHHHcCCcEEEEcc-CCCCCCCCchhhH-HHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchH
Q 019244 209 TAED-ARIAVQAGAAGIIVSN-HGARQLDYVPATI-MALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 285 (344)
Q Consensus 209 ~~~~-a~~~~~~G~d~I~v~~-~gG~~~~~g~~~~-~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~ 285 (344)
++++ ++.+.+.|+|.|.+.. ..+. ..|.... ..++++... ++|++++|||+ .+++.++++.|||.|.+||+
T Consensus 115 ~p~~~~~~~~~~g~d~v~~~~~~~~~--~~g~~~~~~~i~~~~~~---~~pi~v~GGI~-~~~~~~~~~aGad~vvvGsa 188 (207)
T 3ajx_A 115 DKATRAQEVRALGAKFVEMHAGLDEQ--AKPGFDLNGLLAAGEKA---RVPFSVAGGVK-VATIPAVQKAGAEVAVAGGA 188 (207)
T ss_dssp SHHHHHHHHHHTTCSEEEEECCHHHH--TSTTCCTHHHHHHHHHH---TSCEEEESSCC-GGGHHHHHHTTCSEEEESHH
T ss_pred ChHHHHHHHHHhCCCEEEEEeccccc--ccCCCchHHHHHHhhCC---CCCEEEECCcC-HHHHHHHHHcCCCEEEEeee
Confidence 5655 6777788999995432 1100 0111111 444444332 68999999999 78899999999999999999
Q ss_pred HHH
Q 019244 286 VVY 288 (344)
Q Consensus 286 ~l~ 288 (344)
++.
T Consensus 189 I~~ 191 (207)
T 3ajx_A 189 IYG 191 (207)
T ss_dssp HHT
T ss_pred ccC
Confidence 875
|
| >3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0013 Score=61.01 Aligned_cols=86 Identities=16% Similarity=0.155 Sum_probs=67.6
Q ss_pred HHHHHHHHhc-CCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHH
Q 019244 189 KDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 267 (344)
Q Consensus 189 ~~i~~i~~~~-~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~ 267 (344)
+.++++|+.. .+|+.| ++-|.++++.++++|+|.|-++|. +.+.+.++.+.+++++.+.+||||. .+
T Consensus 196 ~Av~~ar~~~p~~kIeV-Ev~tl~e~~eAl~aGaDiImLDn~----------s~~~l~~av~~~~~~v~leaSGGIt-~~ 263 (300)
T 3l0g_A 196 LAIQRLRKNLKNEYIAI-ECDNISQVEESLSNNVDMILLDNM----------SISEIKKAVDIVNGKSVLEVSGCVN-IR 263 (300)
T ss_dssp HHHHHHHHHSSSCCEEE-EESSHHHHHHHHHTTCSEEEEESC----------CHHHHHHHHHHHTTSSEEEEESSCC-TT
T ss_pred HHHHHHHHhCCCCCEEE-EECCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHhhcCceEEEEECCCC-HH
Confidence 3477777765 356655 678999999999999999999873 2355666666666789999999995 77
Q ss_pred HHHHHHHcCCCEEEEchHH
Q 019244 268 DVFKALALGASGIFIGRPV 286 (344)
Q Consensus 268 dv~kalalGAd~V~ig~~~ 286 (344)
.+.++...|+|.+.+|...
T Consensus 264 ~i~~~A~tGVD~IsvGalt 282 (300)
T 3l0g_A 264 NVRNIALTGVDYISIGCIT 282 (300)
T ss_dssp THHHHHTTTCSEEECGGGT
T ss_pred HHHHHHHcCCCEEEeCccc
Confidence 8888888999999999654
|
| >1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1 | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00038 Score=64.45 Aligned_cols=87 Identities=24% Similarity=0.240 Sum_probs=66.4
Q ss_pred HHHHHHHHhcC--CcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHcc---CCCcEEEecCC
Q 019244 189 KDVKWLQTITK--LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ---GRIPVFLDGGV 263 (344)
Q Consensus 189 ~~i~~i~~~~~--~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~---~~~~via~GGI 263 (344)
+.++..|+..+ .++.| .+.|.++++.+.++|+|.|.++|. .+ +.+.++.+.++ .++++.++|||
T Consensus 181 ~av~~ar~~~~~~~~I~V-EV~tleea~eA~~aGaD~I~LDn~-------~~---e~l~~av~~l~~~~~~v~ieASGGI 249 (285)
T 1o4u_A 181 RAVQEVRKIIPFTTKIEV-EVENLEDALRAVEAGADIVMLDNL-------SP---EEVKDISRRIKDINPNVIVEVSGGI 249 (285)
T ss_dssp HHHHHHHTTSCTTSCEEE-EESSHHHHHHHHHTTCSEEEEESC-------CH---HHHHHHHHHHHHHCTTSEEEEEECC
T ss_pred HHHHHHHHhCCCCceEEE-EeCCHHHHHHHHHcCCCEEEECCC-------CH---HHHHHHHHHhhccCCCceEEEECCC
Confidence 35778887763 56666 678999999999999999999873 22 33444444432 27999999999
Q ss_pred CCHHHHHHHHHcCCCEEEEchHHH
Q 019244 264 RRGTDVFKALALGASGIFIGRPVV 287 (344)
Q Consensus 264 r~g~dv~kalalGAd~V~ig~~~l 287 (344)
. .+.+.+....|+|.+.+|+...
T Consensus 250 t-~eni~~~a~tGVD~IsvGslt~ 272 (285)
T 1o4u_A 250 T-EENVSLYDFETVDVISSSRLTL 272 (285)
T ss_dssp C-TTTGGGGCCTTCCEEEEGGGTS
T ss_pred C-HHHHHHHHHcCCCEEEEeHHHc
Confidence 5 7888888889999999998543
|
| >3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00042 Score=60.38 Aligned_cols=89 Identities=11% Similarity=0.132 Sum_probs=66.6
Q ss_pred HHHHHHHHhcCCcEEEEee----cCHHH-HHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCC
Q 019244 189 KDVKWLQTITKLPILVKGV----LTAED-ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 263 (344)
Q Consensus 189 ~~i~~i~~~~~~PvivK~v----~~~~~-a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGI 263 (344)
..++..++ .++..|-..- .+.+. .+.+.+..+|+|-+- .| +. ...+.++++.+ ++|||+.|+|
T Consensus 92 ~~i~~Ak~-~gL~tIqR~FliDS~al~~~~~~i~~~~PD~iEiL--PG------i~-p~iI~~i~~~~--~~PiIaGGlI 159 (192)
T 3kts_A 92 NAIMKAKQ-HKMLAIQRLFMIDSSAYNKGVALIQKVQPDCIELL--PG------II-PEQVQKMTQKL--HIPVIAGGLI 159 (192)
T ss_dssp HHHHHHHH-TTCEEEEEEECCSHHHHHHHHHHHHHHCCSEEEEE--CT------TC-HHHHHHHHHHH--CCCEEEESSC
T ss_pred HHHHHHHH-CCCeEEEEEEEEEcchHHHHHHHHhhcCCCEEEEC--Cc------hh-HHHHHHHHHhc--CCCEEEECCc
Confidence 45666665 4776666653 12233 456677789999773 12 22 26778888776 7999999999
Q ss_pred CCHHHHHHHHHcCCCEEEEchHHHHH
Q 019244 264 RRGTDVFKALALGASGIFIGRPVVYS 289 (344)
Q Consensus 264 r~g~dv~kalalGAd~V~ig~~~l~~ 289 (344)
++.+|+.+++..||++|..++..+|.
T Consensus 160 ~~~edv~~al~aGA~aVsTs~~~LW~ 185 (192)
T 3kts_A 160 ETSEQVNQVIASGAIAVTTSNKHLWE 185 (192)
T ss_dssp CSHHHHHHHHTTTEEEEEECCGGGGT
T ss_pred CCHHHHHHHHHcCCeEEEeCCHHHhC
Confidence 99999999999999999999999984
|
| >3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.003 Score=57.38 Aligned_cols=109 Identities=15% Similarity=0.170 Sum_probs=67.0
Q ss_pred HHHHHHhcCCcEEEEee--cCHHHHHHHHHcCCcEEEEccC-CCCCCCCch--hhHHHHHHHHHHccCCCcEEEecCCCC
Q 019244 191 VKWLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVSNH-GARQLDYVP--ATIMALEEVVKATQGRIPVFLDGGVRR 265 (344)
Q Consensus 191 i~~i~~~~~~PvivK~v--~~~~~a~~~~~~G~d~I~v~~~-gG~~~~~g~--~~~~~l~~i~~~~~~~~~via~GGIr~ 265 (344)
+....+..++.++.=.. .+.+.++...+.+-.+|.+-.. |=+...... ...+.+.++++.. ++||++.+||++
T Consensus 133 ~~~~~~~~Gl~~I~lvaP~t~~eRi~~ia~~a~gFiY~Vs~~GvTG~~~~~~~~~~~~v~~vr~~~--~~Pv~vGfGIst 210 (252)
T 3tha_A 133 LIKECERYNIALITLVSVTTPKERVKKLVKHAKGFIYLLASIGITGTKSVEEAILQDKVKEIRSFT--NLPIFVGFGIQN 210 (252)
T ss_dssp HHHHHHHTTCEECEEEETTSCHHHHHHHHTTCCSCEEEECCSCSSSCSHHHHHHHHHHHHHHHTTC--CSCEEEESSCCS
T ss_pred HHHHHHHcCCeEEEEeCCCCcHHHHHHHHHhCCCeEEEEecCCCCCcccCCCHHHHHHHHHHHHhc--CCcEEEEcCcCC
Confidence 33344445654433222 3467788888887677655432 211111111 1234556665543 799999999999
Q ss_pred HHHHHHHHHcCCCEEEEchHHHHHhhhcChHHHHHHH
Q 019244 266 GTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVL 302 (344)
Q Consensus 266 g~dv~kalalGAd~V~ig~~~l~~~~~~G~~~v~~~l 302 (344)
++++.++.. +||+|.+|+.++..+...+.+...+.+
T Consensus 211 ~e~a~~~~~-~ADGVIVGSAiVk~i~~~~~~~~~~~~ 246 (252)
T 3tha_A 211 NQDVKRMRK-VADGVIVGTSIVKCFKQGNLDIIMKDI 246 (252)
T ss_dssp HHHHHHHTT-TSSEEEECHHHHHHTTSSCHHHHHHHH
T ss_pred HHHHHHHHh-cCCEEEECHHHHHHHHhcCHHHHHHHH
Confidence 999987655 799999999999876554444333333
|
| >3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0012 Score=57.81 Aligned_cols=74 Identities=15% Similarity=0.192 Sum_probs=55.2
Q ss_pred HHHHHHHHHcCCcEEEEccC--CCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHH
Q 019244 210 AEDARIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 287 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~~--gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l 287 (344)
.+.++.+...|+..+.+.+. -|+ ..|.. .+.+.++.+.. ++|+|+.||+.+.+|+.+++..||+.|++|++++
T Consensus 133 ~~~i~~~~~~~~~~vli~~~~~~g~--~~g~~-~~~i~~~~~~~--~~Pvia~~g~~~~~~~~~~~~~G~~~~~vg~a~~ 207 (237)
T 3cwo_X 133 RDWVVEVEKRGAGEILLTSIDRDGT--KSGYD-TEMIRFVRPLT--TLPIIASGGAGKMEHFLEAFLAGADAALAASVFH 207 (237)
T ss_dssp HHHHHHHHHHTCSEEEEEETTTTTC--CSCCC-HHHHHHHGGGC--CSCEEEESCCCSHHHHHHHHHHTCSEEEESHHHH
T ss_pred HHHHHHHhhcCCCeEEEEecCCCCc--ccccc-HHHHHHHHHhc--CCCEEecCCCCCHHHHHHHHHcCcHHHhhhHHHH
Confidence 35567777888886665432 121 12222 66677766544 7999999999999999999999999999999987
Q ss_pred H
Q 019244 288 Y 288 (344)
Q Consensus 288 ~ 288 (344)
.
T Consensus 208 ~ 208 (237)
T 3cwo_X 208 F 208 (237)
T ss_dssp T
T ss_pred c
Confidence 5
|
| >1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP: c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A* 1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A* 1xbx_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0019 Score=57.10 Aligned_cols=107 Identities=10% Similarity=0.086 Sum_probs=67.2
Q ss_pred HHHHHHhcCCcEEEEee--cCHHHHHHHHHcCCcEEEEccC-----CCCCCCCchhhHHHHHHHHHHccCCCcEEEecCC
Q 019244 191 VKWLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVSNH-----GARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 263 (344)
Q Consensus 191 i~~i~~~~~~PvivK~v--~~~~~a~~~~~~G~d~I~v~~~-----gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGI 263 (344)
++.+++ .+.++.++.. .+......+.+.|.+.+++.-. .| .+ | ..+.+..+++..+.++||+++|||
T Consensus 99 ~~~~~~-~g~~~~~~ll~~~t~~~~~~l~~~~~~~~vl~~a~~~~~~G--~~-g--~~~~i~~lr~~~~~~~~i~v~GGI 172 (216)
T 1q6o_A 99 LDVAKE-FNGDVQIELTGYWTWEQAQQWRDAGIGQVVYHRSRDAQAAG--VA-W--GEADITAIKRLSDMGFKVTVTGGL 172 (216)
T ss_dssp HHHHHH-TTCEEEEEECSCCCHHHHHHHHHTTCCEEEEECCHHHHHTT--CC-C--CHHHHHHHHHHHHTTCEEEEESSC
T ss_pred HHHHHH-cCCCceeeeeeCCChhhHHHHHhcCcHHHHHHHHHHHHhcC--CC-C--CHHHHHHHHHhcCCCCcEEEECCc
Confidence 444544 4677655443 2355667777788877766210 11 11 1 244455555555447889999999
Q ss_pred CCHHHHHHHHHcCCCEEEEchHHHHHhhhcChHHHHHHHHHHHHHHH
Q 019244 264 RRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFE 310 (344)
Q Consensus 264 r~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~el~ 310 (344)
+ ...+.+++..|||.+.+||+++.+ .. ....++.++++++
T Consensus 173 ~-~~~~~~~~~aGad~ivvG~~I~~a---~d---p~~~~~~~~~~i~ 212 (216)
T 1q6o_A 173 A-LEDLPLFKGIPIHVFIAGRSIRDA---AS---PVEAARQFKRSIA 212 (216)
T ss_dssp C-GGGGGGGTTSCCSEEEESHHHHTS---SC---HHHHHHHHHHHHH
T ss_pred C-hhhHHHHHHcCCCEEEEeehhcCC---CC---HHHHHHHHHHHHH
Confidence 9 777889999999999999998752 12 2334455555554
|
| >3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0014 Score=60.98 Aligned_cols=85 Identities=25% Similarity=0.369 Sum_probs=65.5
Q ss_pred HHHHHHHhcC-CcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHH
Q 019244 190 DVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 268 (344)
Q Consensus 190 ~i~~i~~~~~-~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~d 268 (344)
.++.+++..+ .|+.| ++-|.++++.+.++|+|.|.++|. +.+.+.++.+.+.++++|.+||||. ...
T Consensus 199 Av~~~r~~~p~~~ieV-Evdtlde~~eAl~aGaD~I~LDn~----------~~~~l~~av~~i~~~v~ieaSGGI~-~~~ 266 (298)
T 3gnn_A 199 ALDAAFALNAEVPVQI-EVETLDQLRTALAHGARSVLLDNF----------TLDMMRDAVRVTEGRAVLEVSGGVN-FDT 266 (298)
T ss_dssp HHHHHHHHC--CCCEE-EESSHHHHHHHHHTTCEEEEEESC----------CHHHHHHHHHHHTTSEEEEEESSCS-TTT
T ss_pred HHHHHHHhCCCCCEEE-EeCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhCCCCeEEEEcCCC-HHH
Confidence 4777777653 45444 478999999999999999999873 2345666655555689999999995 778
Q ss_pred HHHHHHcCCCEEEEchHH
Q 019244 269 VFKALALGASGIFIGRPV 286 (344)
Q Consensus 269 v~kalalGAd~V~ig~~~ 286 (344)
+.+....|+|.+.+|+..
T Consensus 267 i~~~a~tGVD~isvG~lt 284 (298)
T 3gnn_A 267 VRAIAETGVDRISIGALT 284 (298)
T ss_dssp HHHHHHTTCSEEECGGGG
T ss_pred HHHHHHcCCCEEEECCee
Confidence 888888999999999843
|
| >2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.001 Score=59.85 Aligned_cols=73 Identities=19% Similarity=0.192 Sum_probs=58.7
Q ss_pred CHHHHHHHHHcCC-----cEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 019244 209 TAEDARIAVQAGA-----AGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 283 (344)
Q Consensus 209 ~~~~a~~~~~~G~-----d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig 283 (344)
+++.++...+.|. .+|.+... |. ....+.+.++++... ++|+++-|||++.+++.+++. |||.|.+|
T Consensus 147 ~~e~~~~~a~~g~~~l~~~~Vyl~~~-G~-----~~~~~~i~~i~~~~~-~~Pv~vGgGI~s~e~a~~~~~-gAd~VIVG 218 (234)
T 2f6u_A 147 DKELAASYALVGEKLFNLPIIYIEYS-GT-----YGNPELVAEVKKVLD-KARLFYGGGIDSREKAREMLR-YADTIIVG 218 (234)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEECT-TS-----CCCHHHHHHHHHHCS-SSEEEEESCCCSHHHHHHHHH-HSSEEEEC
T ss_pred CHHHHHHHHHhhhhhcCCCEEEEeCC-CC-----cchHHHHHHHHHhCC-CCCEEEEecCCCHHHHHHHHh-CCCEEEEC
Confidence 5677888777777 77777653 32 345678888887652 699999999999999999988 99999999
Q ss_pred hHHHHH
Q 019244 284 RPVVYS 289 (344)
Q Consensus 284 ~~~l~~ 289 (344)
+++...
T Consensus 219 Sa~v~~ 224 (234)
T 2f6u_A 219 NVIYEK 224 (234)
T ss_dssp HHHHHH
T ss_pred hHHHhC
Confidence 999763
|
| >3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} SCOP: c.1.2.3 PDB: 3exs_A* 3ext_A | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00068 Score=60.45 Aligned_cols=97 Identities=15% Similarity=0.113 Sum_probs=62.5
Q ss_pred cCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHH
Q 019244 208 LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 287 (344)
Q Consensus 208 ~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l 287 (344)
.+.+.++.+.+.|++.+++.-....+.++...+.+-+..+++..+.+++|.++|||+ ..++.++...|||.+.+||+++
T Consensus 122 ~~~~~~~~~~~~~~~~~v~~~a~~~~~~Gvv~s~~e~~~ir~~~~~~~~i~v~gGI~-~~~~~~~~~aGad~~VvG~~I~ 200 (221)
T 3exr_A 122 WTYDQAQQWLDAGISQAIYHQSRDALLAGETWGEKDLNKVKKLIEMGFRVSVTGGLS-VDTLKLFEGVDVFTFIAGRGIT 200 (221)
T ss_dssp CCHHHHHHHHHTTCCEEEEECCHHHHHHTCCCCHHHHHHHHHHHHHTCEEEEESSCC-GGGGGGGTTCCCSEEEECHHHH
T ss_pred CCHHHHHHHHcCCHHHHHHHHHHhcCCCccccCHHHHHHHHHhhcCCceEEEECCCC-HHHHHHHHHCCCCEEEECchhh
Confidence 357778888888999887732111111222233444555555554468899999995 6778888899999999999876
Q ss_pred HHhhhcChHHHHHHHHHHHHHHHH
Q 019244 288 YSLAAEGEKGVRRVLEMLREEFEL 311 (344)
Q Consensus 288 ~~~~~~G~~~v~~~l~~l~~el~~ 311 (344)
.+ ..+ ...++.++++++.
T Consensus 201 ~a---~dp---~~a~~~~~~~~~~ 218 (221)
T 3exr_A 201 EA---KNP---AGAARAFKDEIKR 218 (221)
T ss_dssp TS---SSH---HHHHHHHHHHHHH
T ss_pred CC---CCH---HHHHHHHHHHHHH
Confidence 42 112 2345566666553
|
| >1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0034 Score=56.20 Aligned_cols=113 Identities=12% Similarity=0.139 Sum_probs=75.2
Q ss_pred HHHH---HHHHhcCCcEEEEee-cC-HHHHHHHHHcC-CcEEEEcc-CCCC-CCCCchhhHHHHHHHHHHccCCCcEEEe
Q 019244 189 KDVK---WLQTITKLPILVKGV-LT-AEDARIAVQAG-AAGIIVSN-HGAR-QLDYVPATIMALEEVVKATQGRIPVFLD 260 (344)
Q Consensus 189 ~~i~---~i~~~~~~PvivK~v-~~-~~~a~~~~~~G-~d~I~v~~-~gG~-~~~~g~~~~~~l~~i~~~~~~~~~via~ 260 (344)
+.++ .+++. ++-+.+-.- .| .+.++.+.+.| +|.|.+-+ +.|. +..+.+..++-+.++++..+ +++|.++
T Consensus 102 ~~i~~~~~i~~~-G~k~gvalnp~tp~~~~~~~l~~g~~D~VlvmsV~pGf~gq~f~~~~l~ki~~lr~~~~-~~~I~Vd 179 (227)
T 1tqx_A 102 RCIQLAKEIRDN-NLWCGISIKPKTDVQKLVPILDTNLINTVLVMTVEPGFGGQSFMHDMMGKVSFLRKKYK-NLNIQVD 179 (227)
T ss_dssp HHHHHHHHHHTT-TCEEEEEECTTSCGGGGHHHHTTTCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCT-TCEEEEE
T ss_pred HHHHHHHHHHHc-CCeEEEEeCCCCcHHHHHHHhhcCCcCEEEEeeeccCCCCcccchHHHHHHHHHHHhcc-CCeEEEE
Confidence 3567 77664 554444332 23 35566777776 99996643 2221 23456777888888887764 7899999
Q ss_pred cCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcChHHHHHHHHHHHHHHH
Q 019244 261 GGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFE 310 (344)
Q Consensus 261 GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~el~ 310 (344)
|||. .+.+.++..+|||.+.+||.++.+ .. ....++.|++.++
T Consensus 180 GGI~-~~ti~~~~~aGAd~~V~GsaIf~~---~d---~~~~i~~l~~~~~ 222 (227)
T 1tqx_A 180 GGLN-IETTEISASHGANIIVAGTSIFNA---ED---PKYVIDTMRVSVQ 222 (227)
T ss_dssp SSCC-HHHHHHHHHHTCCEEEESHHHHTC---SS---HHHHHHHHHHHHH
T ss_pred CCCC-HHHHHHHHHcCCCEEEEeHHHhCC---CC---HHHHHHHHHHHHH
Confidence 9998 788999999999999999987642 12 3344555555443
|
| >3ve9_A Orotidine-5'-phosphate decarboxylase; TIM barrel fold, orotidine 5'-monopho decarboxylase, lyase; 1.45A {Metallosphaera sedula} PDB: 3ve7_A | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0012 Score=58.71 Aligned_cols=86 Identities=21% Similarity=0.196 Sum_probs=60.7
Q ss_pred HHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCC-HHHHHHHHHcCCCEEEEchHHHHH
Q 019244 211 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR-GTDVFKALALGASGIFIGRPVVYS 289 (344)
Q Consensus 211 ~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~-g~dv~kalalGAd~V~ig~~~l~~ 289 (344)
.-++.+.++|+++++++.+ ..+.+..+++..+ + .++.++||+. +.+..+++..|||.+.+||+++.+
T Consensus 119 ~~a~~a~~~G~~GvV~sat----------~~~e~~~ir~~~~-~-f~~v~pGI~~~g~~~~~a~~~Gad~iVvGr~I~~a 186 (215)
T 3ve9_A 119 YLREVARRVNPKGFVAPAT----------RPSMISRVKGDFP-D-KLVISPGVGTQGAKPGIALCHGADYEIVGRSVYQS 186 (215)
T ss_dssp HHHHHHHHHCCSEEECCTT----------SHHHHHHHHHHCT-T-SEEEECCTTSTTCCTTHHHHTTCSEEEECHHHHTS
T ss_pred HHHHHHHHcCCCceeeCCC----------CHHHHHHHHHhCC-C-cEEEcCCCCcCcCCHHHHHHcCCCEEEeCHHHcCC
Confidence 4577888999999988532 1345666776665 4 6889999994 336778889999999999999863
Q ss_pred hhhcChHHHHHHHHHHHHHHHHHHH
Q 019244 290 LAAEGEKGVRRVLEMLREEFELAMA 314 (344)
Q Consensus 290 ~~~~G~~~v~~~l~~l~~el~~~m~ 314 (344)
+.....++.++++++....
T Consensus 187 ------~dp~~a~~~i~~~i~~~~~ 205 (215)
T 3ve9_A 187 ------ADPVRKLEEIVRSQEEVLS 205 (215)
T ss_dssp ------SSHHHHHHHHHHHHHHHC-
T ss_pred ------CCHHHHHHHHHHHHHHHHH
Confidence 2223455667777766543
|
| >1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0014 Score=59.20 Aligned_cols=72 Identities=14% Similarity=0.164 Sum_probs=56.4
Q ss_pred CHHHHHHHHHcCC----cEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEch
Q 019244 209 TAEDARIAVQAGA----AGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 284 (344)
Q Consensus 209 ~~~~a~~~~~~G~----d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~ 284 (344)
+++.++...++|. -+|.+.. -|. ....+.+.++++.. .++|+++-|||++.+++.+++. |||.|.+|+
T Consensus 140 ~~~~~~~~a~~g~~~~~~~VYl~s-~G~-----~~~~~~i~~i~~~~-~~~Pv~vGgGI~t~e~a~~~~~-gAd~VIVGS 211 (240)
T 1viz_A 140 NMDDIVAYARVSELLQLPIFYLEY-SGV-----LGDIEAVKKTKAVL-ETSTLFYGGGIKDAETAKQYAE-HADVIVVGN 211 (240)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEEC-TTS-----CCCHHHHHHHHHTC-SSSEEEEESSCCSHHHHHHHHT-TCSEEEECT
T ss_pred CHHHHHHHHHhCcccCCCEEEEeC-CCc-----cChHHHHHHHHHhc-CCCCEEEEeccCCHHHHHHHHh-CCCEEEECh
Confidence 3677777777764 6777655 333 34567788887754 2689999999999999999888 999999999
Q ss_pred HHHH
Q 019244 285 PVVY 288 (344)
Q Consensus 285 ~~l~ 288 (344)
.+..
T Consensus 212 a~v~ 215 (240)
T 1viz_A 212 AVYE 215 (240)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9976
|
| >3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.005 Score=61.96 Aligned_cols=81 Identities=16% Similarity=0.073 Sum_probs=59.0
Q ss_pred ecCHHHHHHHHHcC---CcEEEEccCCCCC--CCCc--hhhHHHHHHHHHHc----cCCCcEEEecCCCCHHHHHHHHH-
Q 019244 207 VLTAEDARIAVQAG---AAGIIVSNHGARQ--LDYV--PATIMALEEVVKAT----QGRIPVFLDGGVRRGTDVFKALA- 274 (344)
Q Consensus 207 v~~~~~a~~~~~~G---~d~I~v~~~gG~~--~~~g--~~~~~~l~~i~~~~----~~~~~via~GGIr~g~dv~kala- 274 (344)
+.++++++.+.+.| +|+|.++.-..+. .+.. +..++.+.++.+.+ ..++|+++.||| +.+++.+.++
T Consensus 115 ~ht~eea~~A~~~G~~~aDYv~~Gpvf~T~tK~~~~~~~~G~~~l~~i~~~~~~~~~~~iPvvAIGGI-~~~ni~~v~~~ 193 (540)
T 3nl6_A 115 VGFPEEVDELSKMGPDMVDYIGVGTLFPTLTKKNPKKAPMGTAGAIRVLDALERNNAHWCRTVGIGGL-HPDNIERVLYQ 193 (540)
T ss_dssp ECSHHHHHHHHHTCC--CCEEEESCCSCCCCCC----CCCHHHHHHHHHHHHHHTTCTTCEEEEESSC-CTTTHHHHHHH
T ss_pred CCCHHHHHHHHHcCCCCCCEEEEcCCCCCCCCCCcCCCCCCHHHHHHHHHHHHhhccCCCCEEEEcCC-CHHHHHHHHHh
Confidence 36899999999999 9999986421111 1111 12355566665543 137999999999 7899999998
Q ss_pred -------cCCCEEEEchHHHH
Q 019244 275 -------LGASGIFIGRPVVY 288 (344)
Q Consensus 275 -------lGAd~V~ig~~~l~ 288 (344)
.||+.|.+++.++.
T Consensus 194 ~~~~g~~~GadgvAVvsaI~~ 214 (540)
T 3nl6_A 194 CVSSNGKRSLDGICVVSDIIA 214 (540)
T ss_dssp CBCTTSSCBCSCEEESHHHHT
T ss_pred hcccccccCceEEEEeHHHhc
Confidence 89999999999874
|
| >4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0024 Score=57.33 Aligned_cols=81 Identities=20% Similarity=0.237 Sum_probs=60.2
Q ss_pred cHHHHHHHHHhcC-CcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCC
Q 019244 187 SWKDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 265 (344)
Q Consensus 187 ~~~~i~~i~~~~~-~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~ 265 (344)
..+.|+++++.++ +-+....+++.++++.+.++|+++|+..+ .+.+.+..+.+. .+|++. |+.|
T Consensus 72 a~e~I~~l~~~~~~~~iGaGTVlt~~~a~~Ai~AGA~fIvsP~----------~~~~vi~~~~~~---gi~~ip--Gv~T 136 (232)
T 4e38_A 72 AVEAIRLLRQAQPEMLIGAGTILNGEQALAAKEAGATFVVSPG----------FNPNTVRACQEI---GIDIVP--GVNN 136 (232)
T ss_dssp HHHHHHHHHHHCTTCEEEEECCCSHHHHHHHHHHTCSEEECSS----------CCHHHHHHHHHH---TCEEEC--EECS
T ss_pred HHHHHHHHHHhCCCCEEeECCcCCHHHHHHHHHcCCCEEEeCC----------CCHHHHHHHHHc---CCCEEc--CCCC
Confidence 3567899998874 33444556899999999999999996421 123344444332 577777 6889
Q ss_pred HHHHHHHHHcCCCEEEE
Q 019244 266 GTDVFKALALGASGIFI 282 (344)
Q Consensus 266 g~dv~kalalGAd~V~i 282 (344)
+.++.+|+.+|||.|.+
T Consensus 137 ptEi~~A~~~Gad~vK~ 153 (232)
T 4e38_A 137 PSTVEAALEMGLTTLKF 153 (232)
T ss_dssp HHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHcCCCEEEE
Confidence 99999999999999987
|
| >1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.01 Score=59.13 Aligned_cols=70 Identities=19% Similarity=0.147 Sum_probs=49.9
Q ss_pred HHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEch
Q 019244 210 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 284 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~ 284 (344)
.+.++.+.+.|++.+.+....|. ....++.+..+++..++++|++ .|+|.+.+++.++..+|||++.+|.
T Consensus 244 ~e~~~~l~e~gv~~l~Vd~~~g~----~~~~~~~i~~lk~~~~~~~~Vi-~G~V~t~~~a~~l~~aGad~I~Vg~ 313 (503)
T 1me8_A 244 RERVPALVEAGADVLCIDSSDGF----SEWQKITIGWIREKYGDKVKVG-AGNIVDGEGFRYLADAGADFIKIGI 313 (503)
T ss_dssp HHHHHHHHHHTCSEEEECCSCCC----SHHHHHHHHHHHHHHGGGSCEE-EEEECSHHHHHHHHHHTCSEEEECS
T ss_pred HHHHHHHHhhhccceEEecccCc----ccchhhHHHHHHHhCCCCceEe-eccccCHHHHHHHHHhCCCeEEecc
Confidence 35577888999999998543332 1224455666665543127777 4889999999999999999998764
|
| >1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0025 Score=58.98 Aligned_cols=86 Identities=14% Similarity=0.147 Sum_probs=64.6
Q ss_pred HHHHHHHHhcC-CcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHcc---CCCcEEEecCCC
Q 019244 189 KDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ---GRIPVFLDGGVR 264 (344)
Q Consensus 189 ~~i~~i~~~~~-~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~---~~~~via~GGIr 264 (344)
+.++..++..+ .|+.| .+.+.++++.+.++|+|.|.+.|. .+ +.+.++.+.++ .+++|.++|||.
T Consensus 183 ~av~~ar~~~~~~~I~V-ev~t~eea~eal~aGaD~I~LDn~-------~~---~~~~~~v~~l~~~~~~v~ieaSGGIt 251 (284)
T 1qpo_A 183 DALRAVRNAAPDLPCEV-EVDSLEQLDAVLPEKPELILLDNF-------AV---WQTQTAVQRRDSRAPTVMLESSGGLS 251 (284)
T ss_dssp HHHHHHHHHCTTSCEEE-EESSHHHHHHHGGGCCSEEEEETC-------CH---HHHHHHHHHHHHHCTTCEEEEESSCC
T ss_pred HHHHHHHHhCCCCCEEE-EeCCHHHHHHHHHcCCCEEEECCC-------CH---HHHHHHHHHhhccCCCeEEEEECCCC
Confidence 35777777653 35665 778999999999999999999873 12 33333333332 379999999995
Q ss_pred CHHHHHHHHHcCCCEEEEchHH
Q 019244 265 RGTDVFKALALGASGIFIGRPV 286 (344)
Q Consensus 265 ~g~dv~kalalGAd~V~ig~~~ 286 (344)
.+.+.+....|+|.+.+|+..
T Consensus 252 -~~~i~~~a~tGVD~isvG~l~ 272 (284)
T 1qpo_A 252 -LQTAATYAETGVDYLAVGALT 272 (284)
T ss_dssp -TTTHHHHHHTTCSEEECGGGT
T ss_pred -HHHHHHHHhcCCCEEEECHHH
Confidence 889999999999999999854
|
| >3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0078 Score=57.55 Aligned_cols=88 Identities=23% Similarity=0.279 Sum_probs=66.8
Q ss_pred HHHHHHHHhcCCcEEEEeec-CHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHH
Q 019244 189 KDVKWLQTITKLPILVKGVL-TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 267 (344)
Q Consensus 189 ~~i~~i~~~~~~PvivK~v~-~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~ 267 (344)
+.++++++...+|+.+-... +.+.++.+.++|+|.|++....|. .....+.+.++++.. ++||++ |.+.+.+
T Consensus 85 ~~I~~vk~~~~~pvga~ig~~~~e~a~~l~eaGad~I~ld~a~G~----~~~~~~~i~~i~~~~--~~~Viv-g~v~t~e 157 (361)
T 3khj_A 85 NEVLKVKNSGGLRVGAAIGVNEIERAKLLVEAGVDVIVLDSAHGH----SLNIIRTLKEIKSKM--NIDVIV-GNVVTEE 157 (361)
T ss_dssp HHHHHHHHTTCCCCEEEECTTCHHHHHHHHHTTCSEEEECCSCCS----BHHHHHHHHHHHHHC--CCEEEE-EEECSHH
T ss_pred HHHHHHHhccCceEEEEeCCCHHHHHHHHHHcCcCeEEEeCCCCC----cHHHHHHHHHHHHhc--CCcEEE-ccCCCHH
Confidence 45777777777898887653 378899999999999998543221 122345677777665 688887 6789999
Q ss_pred HHHHHHHcCCCEEEEc
Q 019244 268 DVFKALALGASGIFIG 283 (344)
Q Consensus 268 dv~kalalGAd~V~ig 283 (344)
++.++..+|||+|.+|
T Consensus 158 ~A~~l~~aGaD~I~VG 173 (361)
T 3khj_A 158 ATKELIENGADGIKVG 173 (361)
T ss_dssp HHHHHHHTTCSEEEEC
T ss_pred HHHHHHHcCcCEEEEe
Confidence 9999999999999985
|
| >4dbe_A Orotidine 5'-phosphate decarboxylase; TIM barrel, orotidine 5'-monophosphate decarboxylase, inhibi lyase-lyase inhibitor complex; HET: BMP; 1.79A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0039 Score=55.57 Aligned_cols=87 Identities=14% Similarity=0.165 Sum_probs=61.3
Q ss_pred HHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCH-HHHHHHHHcCCCEEEEchHHHH
Q 019244 210 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g-~dv~kalalGAd~V~ig~~~l~ 288 (344)
..-++.+.++|+|+++++.+ ..+.+..+++.++ + -++.+.||+-. .+..+++..|||.+.+|||++.
T Consensus 125 ~~~a~~a~~~g~~GvV~sat----------~p~e~~~ir~~~~-~-~~~vtPGI~~~g~tp~~a~~~Gad~iVVGR~I~~ 192 (222)
T 4dbe_A 125 DYIKNVIREISPKGIVVGGT----------KLDHITQYRRDFE-K-MTIVSPGMGSQGGSYGDAVCAGADYEIIGRSIYN 192 (222)
T ss_dssp HHHHHHHHHHCCSEEEECTT----------CHHHHHHHHHHCT-T-CEEEECCBSTTSBCTTHHHHHTCSEEEECHHHHT
T ss_pred HHHHHHHHHhCCCEEEECCC----------CHHHHHHHHHhCC-C-CEEEcCCcccCccCHHHHHHcCCCEEEECHHhcC
Confidence 45678889999999998532 1245666776665 4 58889999853 3567888899999999999986
Q ss_pred HhhhcChHHHHHHHHHHHHHHHHHHH
Q 019244 289 SLAAEGEKGVRRVLEMLREEFELAMA 314 (344)
Q Consensus 289 ~~~~~G~~~v~~~l~~l~~el~~~m~ 314 (344)
+ +......+.++++++....
T Consensus 193 A------~dP~~aa~~i~~~i~~~~~ 212 (222)
T 4dbe_A 193 A------GNPLTALRTINKIIEDKVM 212 (222)
T ss_dssp S------SSHHHHHHHHHHHHHHHHH
T ss_pred C------CCHHHHHHHHHHHHHHHHH
Confidence 3 2223445666666666543
|
| >3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0098 Score=54.60 Aligned_cols=89 Identities=16% Similarity=0.222 Sum_probs=64.9
Q ss_pred cHHHHHHHHHhcCCcEEEEee-cCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCC
Q 019244 187 SWKDVKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 265 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v-~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~ 265 (344)
+.+.++.+++.+++||+.|.. .++.++..+.++|+|+|.+...- .....+..+.+....+ .+.+++ .+.|
T Consensus 101 s~~~l~~ir~~v~lPvl~kdfiid~~qv~~A~~~GAD~VlLi~a~-----l~~~~l~~l~~~a~~l--Gl~~lv--ev~t 171 (272)
T 3qja_A 101 SLDDLDAVRASVSIPVLRKDFVVQPYQIHEARAHGADMLLLIVAA-----LEQSVLVSMLDRTESL--GMTALV--EVHT 171 (272)
T ss_dssp HHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEEEGGG-----SCHHHHHHHHHHHHHT--TCEEEE--EESS
T ss_pred CHHHHHHHHHhCCCCEEECccccCHHHHHHHHHcCCCEEEEeccc-----CCHHHHHHHHHHHHHC--CCcEEE--EcCC
Confidence 356899999999999999974 67778899999999999883210 1122333333333333 466665 3789
Q ss_pred HHHHHHHHHcCCCEEEEch
Q 019244 266 GTDVFKALALGASGIFIGR 284 (344)
Q Consensus 266 g~dv~kalalGAd~V~ig~ 284 (344)
.+++.+++.+|||.+++..
T Consensus 172 ~ee~~~A~~~Gad~IGv~~ 190 (272)
T 3qja_A 172 EQEADRALKAGAKVIGVNA 190 (272)
T ss_dssp HHHHHHHHHHTCSEEEEES
T ss_pred HHHHHHHHHCCCCEEEECC
Confidence 9999999999999999984
|
| >1vpx_A Protein (transaldolase (EC 2.2.1.2)); TM0295, structural genomics, JOI for structural genomics, JCSG; HET: GOL; 2.40A {Thermotoga maritima} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=96.79 E-value=0.017 Score=51.63 Aligned_cols=118 Identities=19% Similarity=0.215 Sum_probs=81.4
Q ss_pred cHHHHHHHHHhc--CCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHH---ccCCCcEEEec
Q 019244 187 SWKDVKWLQTIT--KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKA---TQGRIPVFLDG 261 (344)
Q Consensus 187 ~~~~i~~i~~~~--~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~---~~~~~~via~G 261 (344)
+|+-++.++... ++++-+=.+.|.++|..+.++|+++|-. .-||-.+++.+....+.+++.. .+.+..+++.
T Consensus 99 T~eGl~Ai~~L~~eGI~vNvTliFS~~QA~laa~AGa~~iSp--FVgRidd~g~dG~~~v~~i~~~~~~~~~~t~iL~A- 175 (230)
T 1vpx_A 99 TPDGIKAVKTLSAEGIKTNVTLVFSPAQAILAAKAGATYVSP--FVGRMDDLSNDGMRMLGEIVEIYNNYGFETEIIAA- 175 (230)
T ss_dssp SHHHHHHHHHHHHTTCCEEEEEECSHHHHHHHHHHTCSEEEE--BHHHHHHTTSCHHHHHHHHHHHHHHHTCSCEEEEB-
T ss_pred CHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHhCCCeEEEe--ccchhhhccccHHHHHHHHHHHHHHcCCCeEEEee-
Confidence 565444444332 8999888899999999999999998755 3345434444444444444433 3335667765
Q ss_pred CCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcC--hHHHHHHHHHHHH
Q 019244 262 GVRRGTDVFKALALGASGIFIGRPVVYSLAAEG--EKGVRRVLEMLRE 307 (344)
Q Consensus 262 GIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G--~~~v~~~l~~l~~ 307 (344)
++|++.++.++..+|+|.+-+.-.++..+..++ .+|++.+.+.|.+
T Consensus 176 S~r~~~~v~~~~l~G~d~~Tip~~~l~~l~~h~lt~~gv~~F~~d~~~ 223 (230)
T 1vpx_A 176 SIRHPMHVVEAALMGVDIVTMPFAVLEKLFKHPMTDLGIERFMEDWKK 223 (230)
T ss_dssp SCCSHHHHHHHHHHTCSEEEECHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHhCCCEEECCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 599999999999999999999888888776444 3456666655554
|
| >2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0039 Score=55.34 Aligned_cols=90 Identities=22% Similarity=0.300 Sum_probs=56.5
Q ss_pred CCcEEEEeecCHHHHHHHHHcCCcEEEEccCC--CCC---CCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHH
Q 019244 199 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHG--ARQ---LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKAL 273 (344)
Q Consensus 199 ~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~g--G~~---~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kal 273 (344)
++.+++= +.+.++.+++.+.|.+.|.+-+.- |+. ....+..++...+..+....++||++.|||.++.++.++.
T Consensus 111 Gl~~iv~-v~~~~e~~~~~~~~~~~i~~~~~~~iGtG~~~~t~~~~~~~~~~~~ir~~~~~~~ii~ggGI~~~~~~~~~~ 189 (219)
T 2h6r_A 111 GLETIVC-TNNINTSKAVAALSPDCIAVEPPELIGTGIPVSKANPEVVEGTVRAVKEINKDVKVLCGAGISKGEDVKAAL 189 (219)
T ss_dssp TCEEEEE-ESSSHHHHHHTTTCCSEEEECCCC--------------CSHHHHHHHHHHCTTCEEEECSSCCSHHHHHHHH
T ss_pred CCeEEEE-eCCchHHHHHHhCCCCEEEEEeccccccCCCCccCCHHHHHHHHHHHHhccCCCeEEEEeCcCcHHHHHHHh
Confidence 6655543 334455677778898888775421 221 1111211222222222233479999999999999999999
Q ss_pred HcCCCEEEEchHHHHH
Q 019244 274 ALGASGIFIGRPVVYS 289 (344)
Q Consensus 274 alGAd~V~ig~~~l~~ 289 (344)
..|||+|.+|++++..
T Consensus 190 ~~gaDgvlVGsAi~~~ 205 (219)
T 2h6r_A 190 DLGAEGVLLASGVVKA 205 (219)
T ss_dssp TTTCCCEEESHHHHTC
T ss_pred hCCCCEEEEcHHHhCc
Confidence 9999999999999863
|
| >1hg3_A Triosephosphate isomerase; thermostability, tetrameric; 2.7A {Pyrococcus woesei} SCOP: c.1.1.1 | Back alignment and structure |
|---|
Probab=96.75 E-value=0.011 Score=52.72 Aligned_cols=38 Identities=29% Similarity=0.538 Sum_probs=34.7
Q ss_pred cCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHH
Q 019244 252 QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 289 (344)
Q Consensus 252 ~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~ 289 (344)
..++.|+.-|||.++.|+..+...|+|++.+|+.++.+
T Consensus 174 ~~~~~ilyggsV~~~n~~~~~~~~~vDG~LVG~a~l~a 211 (225)
T 1hg3_A 174 NPEVKVLCGAGISTGEDVKKAIELGTVGVLLASGVTKA 211 (225)
T ss_dssp CTTSEEEEESSCCSHHHHHHHHHTTCSEEEESHHHHTC
T ss_pred cCCCEEEEeCCCCcHHHHHHHHhCCCCEEEeCHHHHCC
Confidence 35799999999999999999999999999999999864
|
| >1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=96.70 E-value=0.01 Score=55.42 Aligned_cols=92 Identities=25% Similarity=0.150 Sum_probs=60.1
Q ss_pred HHHHHhcCCcEEEEee-----c----CH----H-HHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHc-c-CCC
Q 019244 192 KWLQTITKLPILVKGV-----L----TA----E-DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT-Q-GRI 255 (344)
Q Consensus 192 ~~i~~~~~~PvivK~v-----~----~~----~-~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~-~-~~~ 255 (344)
......+++|+++=.. . ++ . -++.+.+.|+|.+.+.-.. + +..+.+.+.++.+.. . ..+
T Consensus 148 ~~~~~~~G~p~lv~~~~~g~~v~~~~~~~~~v~~aa~~a~~lGaD~iKv~~~~----~-~~g~~~~~~~vv~~~~~~~~~ 222 (304)
T 1to3_A 148 NELCHSNGLLSIIEPVVRPPRCGDKFDREQAIIDAAKELGDSGADLYKVEMPL----Y-GKGARSDLLTASQRLNGHINM 222 (304)
T ss_dssp HHHHHTTTCEEEEEEEECCCSSCSCCCHHHHHHHHHHHHTTSSCSEEEECCGG----G-GCSCHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHcCCcEEEEEECCCCccccCCChhHHHHHHHHHHHHcCCCEEEeCCCc----C-CCCCHHHHHHHHHhccccCCC
Confidence 3333456899876543 1 11 2 3677889999999884310 0 001345555555541 1 278
Q ss_pred c-EEEecCCCCHHH----HHHHHHcCCCEEEEchHHHHH
Q 019244 256 P-VFLDGGVRRGTD----VFKALALGASGIFIGRPVVYS 289 (344)
Q Consensus 256 ~-via~GGIr~g~d----v~kalalGAd~V~ig~~~l~~ 289 (344)
| |+++||+ +..+ +..++..||+.|.+||.++..
T Consensus 223 P~Vv~aGG~-~~~~~~~~~~~a~~aGa~Gv~vGRaI~q~ 260 (304)
T 1to3_A 223 PWVILSSGV-DEKLFPRAVRVAMEAGASGFLAGRAVWSS 260 (304)
T ss_dssp CEEECCTTS-CTTTHHHHHHHHHHTTCCEEEESHHHHGG
T ss_pred CeEEEecCC-CHHHHHHHHHHHHHcCCeEEEEehHHhCc
Confidence 9 9999999 5533 777888999999999998764
|
| >1w0m_A TIM, triosephosphate isomerase; glycolysis, gluconeogenesis; 2.5A {Thermoproteus tenax} SCOP: c.1.1.1 | Back alignment and structure |
|---|
Probab=96.64 E-value=0.012 Score=52.55 Aligned_cols=38 Identities=29% Similarity=0.524 Sum_probs=34.7
Q ss_pred cCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHH
Q 019244 252 QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 289 (344)
Q Consensus 252 ~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~ 289 (344)
..+++|+.-|||.+..|+..+...|+|++.+|+.++.+
T Consensus 171 ~~~~~ilyggsV~~~n~~~~~~~~giDG~LVG~a~l~a 208 (226)
T 1w0m_A 171 FPEVSVITGAGIESGDDVAAALRLGTRGVLLASAAVKA 208 (226)
T ss_dssp CTTSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHTC
T ss_pred cCCCEEEEeCCCCcHHHHHHHHhCCCCEEEECHHHHCC
Confidence 35789999999999999999999999999999999864
|
| >4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0028 Score=57.25 Aligned_cols=75 Identities=19% Similarity=0.276 Sum_probs=58.5
Q ss_pred HHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHH
Q 019244 210 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 287 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l 287 (344)
.+.|+...+.|+|.+.+-.-.+. .+......+.+.++.+.. .+|+-..||||+-+|+.+.|.+||+-|.+++..+
T Consensus 34 ~~~a~~~~~~gad~lhvvDld~a-~~~~~~~~~~i~~i~~~~--~~pl~vGGGIrs~e~~~~~l~~GadkVii~t~a~ 108 (243)
T 4gj1_A 34 LKKFKEYEKAGAKELHLVDLTGA-KDPSKRQFALIEKLAKEV--SVNLQVGGGIRSKEEVKALLDCGVKRVVIGSMAI 108 (243)
T ss_dssp HHHHHHHHHHTCCEEEEEEHHHH-HCGGGCCHHHHHHHHHHC--CSEEEEESSCCCHHHHHHHHHTTCSEEEECTTTT
T ss_pred HHHHHHHHHCCCCEEEEEecCcc-cccchhHHHHHHHHHHhc--CCCeEeccccccHHHHHHHHHcCCCEEEEccccc
Confidence 36688889999999887431110 012245667888888776 7999999999999999999999999999999654
|
| >1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0094 Score=53.14 Aligned_cols=80 Identities=21% Similarity=0.245 Sum_probs=58.5
Q ss_pred HHHHHHHHHhcC-CcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCH
Q 019244 188 WKDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 266 (344)
Q Consensus 188 ~~~i~~i~~~~~-~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g 266 (344)
.+.++++++.++ +-+....+++.++++.+.++|+|+|... + .+.+.+..+++ . ..+++. |+.|.
T Consensus 56 ~~~i~~l~~~~~~l~vgaGtvl~~d~~~~A~~aGAd~v~~p---~-------~d~~v~~~ar~-~--g~~~i~--Gv~t~ 120 (224)
T 1vhc_A 56 ADAIRLLRANRPDFLIAAGTVLTAEQVVLAKSSGADFVVTP---G-------LNPKIVKLCQD-L--NFPITP--GVNNP 120 (224)
T ss_dssp HHHHHHHHHHCTTCEEEEESCCSHHHHHHHHHHTCSEEECS---S-------CCHHHHHHHHH-T--TCCEEC--EECSH
T ss_pred HHHHHHHHHhCcCcEEeeCcEeeHHHHHHHHHCCCCEEEEC---C-------CCHHHHHHHHH-h--CCCEEe--ccCCH
Confidence 456888888873 4455555678899999999999999542 1 12333444443 3 456655 49999
Q ss_pred HHHHHHHHcCCCEEEE
Q 019244 267 TDVFKALALGASGIFI 282 (344)
Q Consensus 267 ~dv~kalalGAd~V~i 282 (344)
.++.+++.+|||.|.+
T Consensus 121 ~e~~~A~~~Gad~vk~ 136 (224)
T 1vhc_A 121 MAIEIALEMGISAVKF 136 (224)
T ss_dssp HHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHCCCCEEEE
Confidence 9999999999999998
|
| >1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0092 Score=51.85 Aligned_cols=79 Identities=27% Similarity=0.190 Sum_probs=57.1
Q ss_pred HHHHHHHhc--CCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHH
Q 019244 190 DVKWLQTIT--KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 267 (344)
Q Consensus 190 ~i~~i~~~~--~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~ 267 (344)
.++.+|+.+ +.++.+..+.++++++.+.++|+|+| ++.. . ..+.+..+.+ . .+|++. |+.|+.
T Consensus 51 ~i~~ir~~~~~~~~ig~~~v~~~~~~~~a~~~Gad~i-v~~~--~-------~~~~~~~~~~-~--g~~vi~--g~~t~~ 115 (205)
T 1wa3_A 51 VIKELSFLKEKGAIIGAGTVTSVEQCRKAVESGAEFI-VSPH--L-------DEEISQFCKE-K--GVFYMP--GVMTPT 115 (205)
T ss_dssp HHHHTHHHHHTTCEEEEESCCSHHHHHHHHHHTCSEE-ECSS--C-------CHHHHHHHHH-H--TCEEEC--EECSHH
T ss_pred HHHHHHHHCCCCcEEEecccCCHHHHHHHHHcCCCEE-EcCC--C-------CHHHHHHHHH-c--CCcEEC--CcCCHH
Confidence 577777766 34555445679999999999999999 6421 1 1233333332 2 688887 788999
Q ss_pred HHHHHHHcCCCEEEEc
Q 019244 268 DVFKALALGASGIFIG 283 (344)
Q Consensus 268 dv~kalalGAd~V~ig 283 (344)
++.+++.+|||.|.+-
T Consensus 116 e~~~a~~~Gad~vk~~ 131 (205)
T 1wa3_A 116 ELVKAMKLGHTILKLF 131 (205)
T ss_dssp HHHHHHHTTCCEEEET
T ss_pred HHHHHHHcCCCEEEEc
Confidence 9999999999999764
|
| >1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0089 Score=52.91 Aligned_cols=79 Identities=15% Similarity=0.175 Sum_probs=57.3
Q ss_pred HHHHHHHHhcC-CcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHH
Q 019244 189 KDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 267 (344)
Q Consensus 189 ~~i~~i~~~~~-~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~ 267 (344)
+.++.+++.++ +-+....+.+.++++.+.++|+|+|+..+ .+.+.+. .++.. .++++. |+.|..
T Consensus 56 ~~i~~l~~~~~~~~vgagtvi~~d~~~~A~~aGAd~v~~p~----------~d~~v~~-~~~~~--g~~~i~--G~~t~~ 120 (214)
T 1wbh_A 56 DAIRAIAKEVPEAIVGAGTVLNPQQLAEVTEAGAQFAISPG----------LTEPLLK-AATEG--TIPLIP--GISTVS 120 (214)
T ss_dssp HHHHHHHHHCTTSEEEEESCCSHHHHHHHHHHTCSCEEESS----------CCHHHHH-HHHHS--SSCEEE--EESSHH
T ss_pred HHHHHHHHHCcCCEEeeCEEEEHHHHHHHHHcCCCEEEcCC----------CCHHHHH-HHHHh--CCCEEE--ecCCHH
Confidence 46777888774 44455556788999999999999997521 1222222 33333 467776 499999
Q ss_pred HHHHHHHcCCCEEEE
Q 019244 268 DVFKALALGASGIFI 282 (344)
Q Consensus 268 dv~kalalGAd~V~i 282 (344)
++.+++.+|||.|.+
T Consensus 121 e~~~A~~~Gad~v~~ 135 (214)
T 1wbh_A 121 ELMLGMDYGLKEFKF 135 (214)
T ss_dssp HHHHHHHTTCCEEEE
T ss_pred HHHHHHHCCCCEEEE
Confidence 999999999999998
|
| >1l6w_A Fructose-6-phosphate aldolase 1; alpha-beta barrel, domain swapping, lyase; 1.93A {Escherichia coli} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=96.52 E-value=0.029 Score=49.78 Aligned_cols=117 Identities=13% Similarity=0.129 Sum_probs=80.2
Q ss_pred cHHHHHHHHHhc--CCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHH---ccCCCcEEEec
Q 019244 187 SWKDVKWLQTIT--KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKA---TQGRIPVFLDG 261 (344)
Q Consensus 187 ~~~~i~~i~~~~--~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~---~~~~~~via~G 261 (344)
+|+-++.++... ++++-+=.+.|.+.|..+.++|++.|-. .-||-.++|.+....+.++++. .+.+..|++.
T Consensus 89 T~eGl~A~~~L~~~GI~vn~TliFS~~QA~~aa~AGa~~iSp--fvgRidd~g~~G~~~i~~~~~~y~~~~~~t~il~A- 165 (220)
T 1l6w_A 89 TAEGLAAIKMLKAEGIPTLGTAVYGAAQGLLSALAGAEYVAP--YVNRIDAQGGSGIQTVTDLHQLLKMHAPQAKVLAA- 165 (220)
T ss_dssp SHHHHHHHHHHHHHTCCEEEEEECSHHHHHHHHHHTCSEEEE--BHHHHHHTTSCHHHHHHHHHHHHHHHCTTCEEEEB-
T ss_pred CHHHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHHCCCeEEEe--ccchhhcccccHHHHHHHHHHHHHhcCCCeEEeec-
Confidence 565444444332 8999888899999999999999998765 3345444444444555444433 3335666665
Q ss_pred CCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcC--hHHHHHHHHHHH
Q 019244 262 GVRRGTDVFKALALGASGIFIGRPVVYSLAAEG--EKGVRRVLEMLR 306 (344)
Q Consensus 262 GIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G--~~~v~~~l~~l~ 306 (344)
++|+..++.++..+|+|.+-+.-.++..+..++ ..+++.+.+.+.
T Consensus 166 S~r~~~~v~~~~l~G~d~~Tip~~~l~~l~~h~lt~~~v~~F~~D~~ 212 (220)
T 1l6w_A 166 SFKTPRQALDCLLAGCESITLPLDVAQQMISYPAVDAAVAKFEQDWQ 212 (220)
T ss_dssp CCSSHHHHHHHHHTTCSEEEECHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHhCCCeEECCHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 699999999999999999999988888776443 234555554443
|
| >3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.021 Score=51.05 Aligned_cols=87 Identities=16% Similarity=0.120 Sum_probs=60.9
Q ss_pred cHHHHHHHHHhcCCcEE--EEe-------e--cCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhH-HHHHHHHHHccCC
Q 019244 187 SWKDVKWLQTITKLPIL--VKG-------V--LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATI-MALEEVVKATQGR 254 (344)
Q Consensus 187 ~~~~i~~i~~~~~~Pvi--vK~-------v--~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~-~~l~~i~~~~~~~ 254 (344)
+.+.|+++|+.+++||+ .|. . .+.+++..+.++|+|.|.+...... .+..+ +.+..+.+ . .
T Consensus 57 ~~~~i~~ir~~v~~Pvig~~k~~~~~~~~~I~~~~~~i~~~~~aGad~I~l~~~~~~----~p~~l~~~i~~~~~-~--g 129 (229)
T 3q58_A 57 GIENLRTVRPHLSVPIIGIIKRDLTGSPVRITPYLQDVDALAQAGADIIAFDASFRS----RPVDIDSLLTRIRL-H--G 129 (229)
T ss_dssp SHHHHHHHGGGCCSCEEEECBCCCSSCCCCBSCSHHHHHHHHHHTCSEEEEECCSSC----CSSCHHHHHHHHHH-T--T
T ss_pred CHHHHHHHHHhcCCCEEEEEeecCCCCceEeCccHHHHHHHHHcCCCEEEECccccC----ChHHHHHHHHHHHH-C--C
Confidence 46789999999999987 231 1 3457899999999999987643211 12222 33343332 2 4
Q ss_pred CcEEEecCCCCHHHHHHHHHcCCCEEEE
Q 019244 255 IPVFLDGGVRRGTDVFKALALGASGIFI 282 (344)
Q Consensus 255 ~~via~GGIr~g~dv~kalalGAd~V~i 282 (344)
+++++ .+.+.+++.++..+|||.|++
T Consensus 130 ~~v~~--~v~t~eea~~a~~~Gad~Ig~ 155 (229)
T 3q58_A 130 LLAMA--DCSTVNEGISCHQKGIEFIGT 155 (229)
T ss_dssp CEEEE--ECSSHHHHHHHHHTTCSEEEC
T ss_pred CEEEE--ecCCHHHHHHHHhCCCCEEEe
Confidence 55554 689999999999999999975
|
| >1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0081 Score=53.61 Aligned_cols=79 Identities=22% Similarity=0.256 Sum_probs=57.6
Q ss_pred HHHHHHHHhc-CCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHH
Q 019244 189 KDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 267 (344)
Q Consensus 189 ~~i~~i~~~~-~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~ 267 (344)
+.++.+++.+ ++.+....+.+.++++.+.++|+|+|+.. + . +.+.+ +.++.. .++++. |+.|..
T Consensus 66 ~~i~~l~~~~~~~~igagtvl~~d~~~~A~~aGAd~v~~p---~--~-----d~~v~-~~~~~~--g~~~i~--G~~t~~ 130 (225)
T 1mxs_A 66 KAIQVLREQRPELCVGAGTVLDRSMFAAVEAAGAQFVVTP---G--I-----TEDIL-EAGVDS--EIPLLP--GISTPS 130 (225)
T ss_dssp HHHHHHHHHCTTSEEEEECCCSHHHHHHHHHHTCSSEECS---S--C-----CHHHH-HHHHHC--SSCEEC--EECSHH
T ss_pred HHHHHHHHhCcccEEeeCeEeeHHHHHHHHHCCCCEEEeC---C--C-----CHHHH-HHHHHh--CCCEEE--eeCCHH
Confidence 4577788877 45555566688899999999999999642 1 1 22222 233333 467665 499999
Q ss_pred HHHHHHHcCCCEEEE
Q 019244 268 DVFKALALGASGIFI 282 (344)
Q Consensus 268 dv~kalalGAd~V~i 282 (344)
++.+++.+|||.|.+
T Consensus 131 e~~~A~~~Gad~vk~ 145 (225)
T 1mxs_A 131 EIMMGYALGYRRFKL 145 (225)
T ss_dssp HHHHHHTTTCCEEEE
T ss_pred HHHHHHHCCCCEEEE
Confidence 999999999999998
|
| >3iv3_A Tagatose 1,6-diphosphate aldolase 2; TIM barrel, phosphate binding, tagatose-bisphosphate aldolas tagatose-1,6-bisphosphate aldolase; HET: MSE; 1.80A {Streptococcus mutans} PDB: 3mhf_A 3mhg_A 3jrk_A 3kao_A* 3myp_A 3myo_A | Back alignment and structure |
|---|
Probab=96.37 E-value=0.022 Score=53.73 Aligned_cols=105 Identities=21% Similarity=0.247 Sum_probs=66.2
Q ss_pred HHHH--HHcCCcEEEEccCCCCC----C---CCc---hhhHHHHHHHHHHccCCCcEE-EecCCCCHHHHHH----HHHc
Q 019244 213 ARIA--VQAGAAGIIVSNHGARQ----L---DYV---PATIMALEEVVKATQGRIPVF-LDGGVRRGTDVFK----ALAL 275 (344)
Q Consensus 213 a~~~--~~~G~d~I~v~~~gG~~----~---~~g---~~~~~~l~~i~~~~~~~~~vi-a~GGIr~g~dv~k----alal 275 (344)
++.+ .+.|+|.+++--.|-.. + ... ....+.+.++.+.. .+|++ .+||+ +..+..+ |+..
T Consensus 194 ~R~~~~~elGaDv~Kve~p~~~~~v~g~~~~~~~y~~~ea~~~f~~~~~a~--~~P~v~lsgG~-~~~~fl~~v~~A~~a 270 (332)
T 3iv3_A 194 MKVFSAERFGIDVLKVEVPVNMVYVEGFAEGEVVYSKEEAAQAFREQEAST--DLPYIYLSAGV-SAELFQETLVFAHKA 270 (332)
T ss_dssp HHHHTSGGGCCSEEEECCSSCGGGBTTTCSSCCCBCHHHHHHHHHHHHHTC--SSCEEEECTTC-CHHHHHHHHHHHHHH
T ss_pred HHHHhhcCcCCcEEEEecCCChhhhcccccccccccHHHHHHHHHHHHhcC--CCCEEEECCCC-CHHHHHHHHHHHHHc
Confidence 3455 47799999996332110 0 001 12234466665544 79965 79998 5666654 4457
Q ss_pred CC--CEEEEchHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHhhhccc
Q 019244 276 GA--SGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRD 327 (344)
Q Consensus 276 GA--d~V~ig~~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~~~i~~l~~~ 327 (344)
|| ..|.+||.+.. .++..+.+.=.+..+.+|.-.|..+|++|+..
T Consensus 271 Ga~f~Gv~~GRnvwq-------~~v~~~~~~~~~~~~~~l~~~g~~~i~~l~~v 317 (332)
T 3iv3_A 271 GAKFNGVLCGRATWA-------GSVQVYMEEGKEAARQWLRTSGLQNINELNKV 317 (332)
T ss_dssp TCCCCEEEECHHHHT-------THHHHHHHHCHHHHHHHHTTHHHHHHHHHHHH
T ss_pred CCCcceEEeeHHHHH-------hhhhhhccccHHHHHHHHHHHhHHHHHHHHHH
Confidence 99 99999998865 23444444444567777888888888888754
|
| >3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A | Back alignment and structure |
|---|
Probab=96.36 E-value=0.011 Score=53.09 Aligned_cols=61 Identities=13% Similarity=0.177 Sum_probs=47.4
Q ss_pred CCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 220 GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 220 G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
|..+|.+-.. |. ....+.+.++++.. .++|++.-|||++++++.++.. |||+|.+|+.+..
T Consensus 159 g~~~vY~e~s-G~-----~g~~~~v~~ir~~~-~~~pv~vGfGI~~~e~a~~~~~-gAD~VVVGSai~~ 219 (235)
T 3w01_A 159 RLPVMYIEYS-GI-----YGDVSKVQAVSEHL-TETQLFYGGGISSEQQATEMAA-IADTIIVGDIIYK 219 (235)
T ss_dssp CCSEEEEECT-TS-----CCCHHHHHHHHTTC-SSSEEEEESCCCSHHHHHHHHT-TSSEEEECTHHHH
T ss_pred CCCEEEEecC-CC-----cCCHHHHHHHHHhc-CCCCEEEECCcCCHHHHHHHHc-CCCEEEECCceec
Confidence 7778877543 32 12467777777654 2689999999999999988776 9999999999976
|
| >3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=96.35 E-value=0.021 Score=51.14 Aligned_cols=87 Identities=21% Similarity=0.241 Sum_probs=60.6
Q ss_pred cHHHHHHHHHhcCCcEEE--Ee-------e--cCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhH-HHHHHHHHHccCC
Q 019244 187 SWKDVKWLQTITKLPILV--KG-------V--LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATI-MALEEVVKATQGR 254 (344)
Q Consensus 187 ~~~~i~~i~~~~~~Pviv--K~-------v--~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~-~~l~~i~~~~~~~ 254 (344)
+.+.|+++|+.+++||+- |- . .+.+++..+.++|+|.|.+...... .+..+ +.+..+.+ . .
T Consensus 57 ~~~~i~~ir~~v~~Pvig~~k~d~~~~~~~I~~~~~~i~~~~~~Gad~V~l~~~~~~----~p~~l~~~i~~~~~-~--g 129 (232)
T 3igs_A 57 GIDNLRMTRSLVSVPIIGIIKRDLDESPVRITPFLDDVDALAQAGAAIIAVDGTARQ----RPVAVEALLARIHH-H--H 129 (232)
T ss_dssp SHHHHHHHHTTCCSCEEEECBCCCSSCCCCBSCSHHHHHHHHHHTCSEEEEECCSSC----CSSCHHHHHHHHHH-T--T
T ss_pred CHHHHHHHHHhcCCCEEEEEeecCCCcceEeCccHHHHHHHHHcCCCEEEECccccC----CHHHHHHHHHHHHH-C--C
Confidence 467899999999999862 31 1 3457899999999999988643211 12222 33333332 2 4
Q ss_pred CcEEEecCCCCHHHHHHHHHcCCCEEEE
Q 019244 255 IPVFLDGGVRRGTDVFKALALGASGIFI 282 (344)
Q Consensus 255 ~~via~GGIr~g~dv~kalalGAd~V~i 282 (344)
+++++ .+.+.+++.++..+|||.+++
T Consensus 130 ~~v~~--~v~t~eea~~a~~~Gad~Ig~ 155 (232)
T 3igs_A 130 LLTMA--DCSSVDDGLACQRLGADIIGT 155 (232)
T ss_dssp CEEEE--ECCSHHHHHHHHHTTCSEEEC
T ss_pred CEEEE--eCCCHHHHHHHHhCCCCEEEE
Confidence 55554 689999999999999999975
|
| >1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0054 Score=61.99 Aligned_cols=76 Identities=22% Similarity=0.268 Sum_probs=56.7
Q ss_pred HHHHHHHHcCCcEEEEccCCCC-CCC-CchhhHHHHHHHHHHccCCCcEEEecCCCCHHH-----------HHHHHHcCC
Q 019244 211 EDARIAVQAGAAGIIVSNHGAR-QLD-YVPATIMALEEVVKATQGRIPVFLDGGVRRGTD-----------VFKALALGA 277 (344)
Q Consensus 211 ~~a~~~~~~G~d~I~v~~~gG~-~~~-~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~d-----------v~kalalGA 277 (344)
+.|+...+.|+|.+.+.+-.+. ... ......+.+.++.+.+ .+||++.||||+.+| +.+++.+||
T Consensus 284 ~~A~~~~~~Ga~~l~~~dl~~~~~~~~~~~~~~~~i~~i~~~~--~ipi~vgGGIr~~~d~~~~~~~~~~~a~~~l~aGa 361 (555)
T 1jvn_A 284 QLAQKYYQQGADEVTFLNITSFRDCPLKDTPMLEVLKQAAKTV--FVPLTVGGGIKDIVDVDGTKIPALEVASLYFRSGA 361 (555)
T ss_dssp HHHHHHHHTTCSEEEEEEEC---CCCGGGCHHHHHHHHHTTTC--CSCEEEESSCSCEECTTCCEECHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCCEEEEEeCCccccccCCCchHHHHHHHHHhhC--CCcEEEeCccccchhcccccchHHHHHHHHHHcCC
Confidence 5578888999999988753321 111 1223566777776554 799999999999855 999999999
Q ss_pred CEEEEchHHHH
Q 019244 278 SGIFIGRPVVY 288 (344)
Q Consensus 278 d~V~ig~~~l~ 288 (344)
|.|.+|+..+.
T Consensus 362 d~V~igt~~~~ 372 (555)
T 1jvn_A 362 DKVSIGTDAVY 372 (555)
T ss_dssp SEEEECHHHHH
T ss_pred CEEEECCHHhh
Confidence 99999998764
|
| >1wx0_A Transaldolase; structural genomics, riken structural genomics/proteomics initiative, RSGI, transferas; 2.27A {Thermus thermophilus HB8} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=96.27 E-value=0.025 Score=50.37 Aligned_cols=116 Identities=22% Similarity=0.183 Sum_probs=76.5
Q ss_pred cHHHHHHHHHhc--CCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHc---cCCCcEEEec
Q 019244 187 SWKDVKWLQTIT--KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDG 261 (344)
Q Consensus 187 ~~~~i~~i~~~~--~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~---~~~~~via~G 261 (344)
+|+-++.++... ++++-+=.+.|.+++..+.++|++.|-. .-||-.++|.+....+.++++.. +.+..+++.
T Consensus 96 T~eGl~A~~~L~~~GI~vN~TliFS~~Qa~~aa~AGa~~iSp--FVgRidd~g~~G~~~v~~i~~~~~~~~~~t~vl~A- 172 (223)
T 1wx0_A 96 TEEGLKACKRLSAEGIKVNMTLIFSANQALLAARAGASYVSP--FLGRVDDISWDGGELLREIVEMIQVQDLPVKVIAA- 172 (223)
T ss_dssp SHHHHHHHHHHHHTTCCEEEEEECSHHHHHHHHHTTCSEEEE--BHHHHHHTTSCHHHHHHHHHHHHHHTTCSCEEEEB-
T ss_pred CHHHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHHCCCeEEEe--ccchHhhcCCCHHHHHHHHHHHHHHcCCCeEEeec-
Confidence 566444444332 8999888899999999999999998755 34554445544455555554433 335556665
Q ss_pred CCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcCh--HHHHHHHHHH
Q 019244 262 GVRRGTDVFKALALGASGIFIGRPVVYSLAAEGE--KGVRRVLEML 305 (344)
Q Consensus 262 GIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G~--~~v~~~l~~l 305 (344)
++|+..++.++..+|+|.+-+.-.++..+..++. .+++.+.+.|
T Consensus 173 S~r~~~~v~~~~l~G~d~~Tip~~~l~~l~~h~lt~~~v~~F~~D~ 218 (223)
T 1wx0_A 173 SIRHPRHVTEAALLGADIATMPHAVFKQLLKHPLTDIGLKRFLEDW 218 (223)
T ss_dssp CCCSHHHHHHHHHTTCSEEEECHHHHHHHTCCHHHHHHC-------
T ss_pred ccCCHHHHHHHHHhCCCEEECCHHHHHHHHcCCChHHHHHHHHHHH
Confidence 6999999999999999999999888887754432 3444444433
|
| >4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A | Back alignment and structure |
|---|
Probab=96.25 E-value=0.029 Score=53.68 Aligned_cols=88 Identities=15% Similarity=0.185 Sum_probs=62.5
Q ss_pred HHHHHHHhcCCcEEEEee---cCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCH
Q 019244 190 DVKWLQTITKLPILVKGV---LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 266 (344)
Q Consensus 190 ~i~~i~~~~~~PvivK~v---~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g 266 (344)
.++++++.-.+++.+-.. ...+.++.+.++|+|.|.+....|. ....++.+.++++.. .+++|++ |.+.+.
T Consensus 87 ~i~~vk~~~~l~vga~vg~~~~~~~~~~~lieaGvd~I~idta~G~----~~~~~~~I~~ik~~~-p~v~Vi~-G~v~t~ 160 (366)
T 4fo4_A 87 QVHQVKISGGLRVGAAVGAAPGNEERVKALVEAGVDVLLIDSSHGH----SEGVLQRIRETRAAY-PHLEIIG-GNVATA 160 (366)
T ss_dssp HHHHHHTTTSCCCEEECCSCTTCHHHHHHHHHTTCSEEEEECSCTT----SHHHHHHHHHHHHHC-TTCEEEE-EEECSH
T ss_pred HHHHHHhcCceeEEEEeccChhHHHHHHHHHhCCCCEEEEeCCCCC----CHHHHHHHHHHHHhc-CCCceEe-eeeCCH
Confidence 466666643445544332 3468899999999999998654332 123445677777665 3677776 678999
Q ss_pred HHHHHHHHcCCCEEEEc
Q 019244 267 TDVFKALALGASGIFIG 283 (344)
Q Consensus 267 ~dv~kalalGAd~V~ig 283 (344)
+++.++..+|||+|.+|
T Consensus 161 e~A~~a~~aGAD~I~vG 177 (366)
T 4fo4_A 161 EGARALIEAGVSAVKVG 177 (366)
T ss_dssp HHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHHcCCCEEEEe
Confidence 99999999999999994
|
| >4gbu_A NADPH dehydrogenase 1; alpha/beta barrel, enenone reductase, alkene reductase, NADP oxidoreductase, carvone, enenatioselectivity; HET: 0WV 1PE FMN; 1.18A {Saccharomyces pastorianus} PDB: 4ge8_A* 1oya_A* 1oyb_A* 1oyc_A* 3tx9_A* 3rnd_A* 1k02_A* 1k03_A* 1bwk_A* 1bwl_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.027 Score=54.49 Aligned_cols=40 Identities=20% Similarity=0.129 Sum_probs=33.7
Q ss_pred HHHHccCCCcEEEecCCCCHHHHHHHHHc-CCCEEEEchHHHH
Q 019244 247 VVKATQGRIPVFLDGGVRRGTDVFKALAL-GASGIFIGRPVVY 288 (344)
Q Consensus 247 i~~~~~~~~~via~GGIr~g~dv~kalal-GAd~V~ig~~~l~ 288 (344)
+++.+ ++|||+.|||.+..++.+.+.. +||+|++||+++.
T Consensus 313 ir~~~--~~pvi~~G~~~~~~~~~~~~~~~~aDlV~~gR~~ia 353 (400)
T 4gbu_A 313 VYSIW--KGPVIRAGNFALHPEVVREEVKDKRTLIGYGRFFIS 353 (400)
T ss_dssp HHHHC--CSCEEEESSCTTCHHHHHHHTTSTTEEEECCHHHHH
T ss_pred HHHHh--CCCEEEeCCCCChHHHHHHHHcCCCeEhHHHHHHHH
Confidence 44444 7899999999999998888865 5999999999985
|
| >1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A | Back alignment and structure |
|---|
Probab=96.21 E-value=0.031 Score=50.64 Aligned_cols=90 Identities=20% Similarity=0.237 Sum_probs=65.6
Q ss_pred cHHHHHHHHHhcCCcEEEEee-cCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCC
Q 019244 187 SWKDVKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 265 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v-~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~ 265 (344)
+.+++..+|+.+++||+-|.- .++.++..+..+|||+|.+...- + ...++..+.+..+.+ .+.++++ ++|
T Consensus 89 s~~dL~~ir~~v~lPvLrKDfi~~~~qi~ea~~~GAD~ilLi~a~---l--~~~~l~~l~~~a~~l--Gl~~lvE--v~~ 159 (251)
T 1i4n_A 89 DPAFVRAARNLTCRPILAKDFYIDTVQVKLASSVGADAILIIARI---L--TAEQIKEIYEAAEEL--GMDSLVE--VHS 159 (251)
T ss_dssp CTHHHHHHHTTCCSCEEEECCCCSTHHHHHHHHTTCSEEEEEGGG---S--CHHHHHHHHHHHHTT--TCEEEEE--ECS
T ss_pred CHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHcCCCEEEEeccc---C--CHHHHHHHHHHHHHc--CCeEEEE--eCC
Confidence 578999999999999999974 44456777999999999885431 1 123344443333333 5666665 789
Q ss_pred HHHHHHHHHc-CCCEEEEchH
Q 019244 266 GTDVFKALAL-GASGIFIGRP 285 (344)
Q Consensus 266 g~dv~kalal-GAd~V~ig~~ 285 (344)
.+++.+++.+ |++.|++-..
T Consensus 160 ~eE~~~A~~l~g~~iIGinnr 180 (251)
T 1i4n_A 160 REDLEKVFSVIRPKIIGINTR 180 (251)
T ss_dssp HHHHHHHHTTCCCSEEEEECB
T ss_pred HHHHHHHHhcCCCCEEEEeCc
Confidence 9999999999 9999998754
|
| >1vkf_A Glycerol uptake operon antiterminator-related Pro; struc genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: CIT; 1.65A {Thermotoga maritima} SCOP: c.1.29.1 | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0048 Score=53.40 Aligned_cols=85 Identities=11% Similarity=0.075 Sum_probs=56.4
Q ss_pred HHHHHHHhcCCcEEEEeec----CHH-HHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCC
Q 019244 190 DVKWLQTITKLPILVKGVL----TAE-DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 264 (344)
Q Consensus 190 ~i~~i~~~~~~PvivK~v~----~~~-~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr 264 (344)
.+...++ .++..+-..-+ +.+ .++.+.+..+|++-+- . |+-....+.++ -++|||+.|+|+
T Consensus 94 ~i~~Akk-~GL~tIqR~FliDs~al~~~~~~I~~~kPD~iEiL--P------g~v~p~~I~~v-----~~~PiIaGGlI~ 159 (188)
T 1vkf_A 94 NYVVAKK-NGIPAVLRFFALDSKAVERGIEQIETLGVDVVEVL--P------GAVAPKVARKI-----PGRTVIAAGLVE 159 (188)
T ss_dssp HHHHHHH-TTCCEEEEEECCSHHHHHHHHHHHHHHTCSEEEEE--S------GGGHHHHHTTS-----TTSEEEEESCCC
T ss_pred HHHHHHH-cCCEEeeEEEEEEeHHHhhhhhhccccCCCeEeec--C------CCchHHHHHHh-----cCCCEEEECCcC
Confidence 4555544 36555555421 222 3455566778887662 1 11122334433 378999999999
Q ss_pred CHHHHHHHHHcCCCEEEEchHHHHH
Q 019244 265 RGTDVFKALALGASGIFIGRPVVYS 289 (344)
Q Consensus 265 ~g~dv~kalalGAd~V~ig~~~l~~ 289 (344)
+.+|+.+ +..||++|..++.-||.
T Consensus 160 t~edv~~-l~aGA~aIsTs~~~LW~ 183 (188)
T 1vkf_A 160 TEEEARE-ILKHVSAISTSSRILWK 183 (188)
T ss_dssp SHHHHHH-HTTTSSEEEECCHHHHT
T ss_pred CHHHHHH-HHCCCeEEEeCCHHHhC
Confidence 9999999 99999999999998884
|
| >3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A* | Back alignment and structure |
|---|
Probab=96.07 E-value=0.33 Score=46.64 Aligned_cols=97 Identities=27% Similarity=0.330 Sum_probs=60.7
Q ss_pred cHHHHHHHHHhcCCcEEEEeec--CHHHH----HHHHHcCCcEEEEccCCCCCCCC-ch--hhHHHHHHHHHHccCCCcE
Q 019244 187 SWKDVKWLQTITKLPILVKGVL--TAEDA----RIAVQAGAAGIIVSNHGARQLDY-VP--ATIMALEEVVKATQGRIPV 257 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v~--~~~~a----~~~~~~G~d~I~v~~~gG~~~~~-g~--~~~~~l~~i~~~~~~~~~v 257 (344)
+++.++.+.+ +++||++|..+ +.++. +.+.+.|..-|++.-.|.+.... .. ..+.+++.+++.. .+||
T Consensus 238 n~~LL~~~a~-~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~L~~rG~s~yp~~~~~~ldl~~i~~lk~~~--~lpV 314 (385)
T 3nvt_A 238 NFELLKAAGR-VDKPILLKRGLSATIEEFIGAAEYIMSQGNGKIILCERGIRTYEKATRNTLDISAVPILKKET--HLPV 314 (385)
T ss_dssp CHHHHHHHHT-SSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECCBCCSCCSSSSBCCTTHHHHHHHHB--SSCE
T ss_pred CHHHHHHHHc-cCCcEEEecCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCCCCccccCHHHHHHHHHhc--CCCE
Confidence 3456777654 69999999864 66664 44556787666665434443322 11 2345566666655 6899
Q ss_pred EEe----cCCCCHH--HHHHHHHcCCCEEEEchHH
Q 019244 258 FLD----GGVRRGT--DVFKALALGASGIFIGRPV 286 (344)
Q Consensus 258 ia~----GGIr~g~--dv~kalalGAd~V~ig~~~ 286 (344)
+.| +|-|.-. =...|+++||++++|-..+
T Consensus 315 ~~D~th~~G~r~~v~~~a~AAvA~GA~gl~iE~H~ 349 (385)
T 3nvt_A 315 MVDVTHSTGRKDLLLPCAKAALAIEADGVMAEVHP 349 (385)
T ss_dssp EEEHHHHHCCGGGHHHHHHHHHHTTCSEEEEEBCS
T ss_pred EEcCCCCCCccchHHHHHHHHHHhCCCEEEEEecC
Confidence 887 3444332 2446889999999998744
|
| >1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=95.98 E-value=0.057 Score=47.32 Aligned_cols=94 Identities=12% Similarity=0.078 Sum_probs=65.3
Q ss_pred HHHHHHHHHhcCCcEEE--E----e--e---cCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCc
Q 019244 188 WKDVKWLQTITKLPILV--K----G--V---LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIP 256 (344)
Q Consensus 188 ~~~i~~i~~~~~~Pviv--K----~--v---~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~ 256 (344)
.+.++.+++.+++|++. | + . .+.+.+..+.++|+|.|.+...-....+ ....+.+..+++.. +..+
T Consensus 45 ~~~i~~i~~~~~~pv~~~~~~~~~~~~~~i~~~~~~i~~~~~~Gad~v~l~~~~~~~p~--~~~~~~i~~~~~~~-~~~~ 121 (223)
T 1y0e_A 45 KEDILAIKETVDLPVIGIVKRDYDHSDVFITATSKEVDELIESQCEVIALDATLQQRPK--ETLDELVSYIRTHA-PNVE 121 (223)
T ss_dssp HHHHHHHHHHCCSCEEEECBCCCTTCCCCBSCSHHHHHHHHHHTCSEEEEECSCSCCSS--SCHHHHHHHHHHHC-TTSE
T ss_pred HHHHHHHHHhcCCCEEeeeccCCCccccccCCcHHHHHHHHhCCCCEEEEeeecccCcc--cCHHHHHHHHHHhC-CCce
Confidence 46799999999999852 1 1 1 3467889999999999988542110000 12345677777765 3566
Q ss_pred EEEecCCCCHHHHHHHHHcCCCEEEEchHH
Q 019244 257 VFLDGGVRRGTDVFKALALGASGIFIGRPV 286 (344)
Q Consensus 257 via~GGIr~g~dv~kalalGAd~V~ig~~~ 286 (344)
++. ++.+..++.++..+|+|.++++.+.
T Consensus 122 v~~--~~~t~~e~~~~~~~G~d~i~~~~~g 149 (223)
T 1y0e_A 122 IMA--DIATVEEAKNAARLGFDYIGTTLHG 149 (223)
T ss_dssp EEE--ECSSHHHHHHHHHTTCSEEECTTTT
T ss_pred EEe--cCCCHHHHHHHHHcCCCEEEeCCCc
Confidence 655 6789999999999999999876543
|
| >3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.048 Score=52.01 Aligned_cols=68 Identities=19% Similarity=0.050 Sum_probs=52.3
Q ss_pred HHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 019244 210 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 283 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig 283 (344)
.+.++.+.++|+|.|++....|. ....++.+..+++..+ ++||++ |++.|.+++.++..+|||+|.+|
T Consensus 102 ~e~~~~a~~aGvdvI~id~a~G~----~~~~~e~I~~ir~~~~-~~~Vi~-G~V~T~e~A~~a~~aGaD~I~Vg 169 (361)
T 3r2g_A 102 LQRAEALRDAGADFFCVDVAHAH----AKYVGKTLKSLRQLLG-SRCIMA-GNVATYAGADYLASCGADIIKAG 169 (361)
T ss_dssp HHHHHHHHHTTCCEEEEECSCCS----SHHHHHHHHHHHHHHT-TCEEEE-EEECSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHcCCCEEEEeCCCCC----cHhHHHHHHHHHHhcC-CCeEEE-cCcCCHHHHHHHHHcCCCEEEEc
Confidence 46688999999999999643232 1233566777776553 688887 67999999999999999999985
|
| >2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.78 E-value=0.012 Score=53.55 Aligned_cols=68 Identities=16% Similarity=0.139 Sum_probs=54.8
Q ss_pred HHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 210 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
.+.|+...+.|++.+.+-.-.+ ...+.+.++.+.+ .+||...|||++- |+.+.+ +||+-|.+|+..+.
T Consensus 41 ~~~A~~~~~~Ga~~l~vvDL~~-------~n~~~i~~i~~~~--~~pv~vgGGir~~-~~~~~l-~Ga~~Viigs~a~~ 108 (260)
T 2agk_A 41 SYYAKLYKDRDVQGCHVIKLGP-------NNDDAAREALQES--PQFLQVGGGINDT-NCLEWL-KWASKVIVTSWLFT 108 (260)
T ss_dssp HHHHHHHHHTTCTTCEEEEESS-------SCHHHHHHHHHHS--TTTSEEESSCCTT-THHHHT-TTCSCEEECGGGBC
T ss_pred HHHHHHHHHcCCCEEEEEeCCC-------CCHHHHHHHHhcC--CceEEEeCCCCHH-HHHHHh-cCCCEEEECcHHHh
Confidence 4668999999999888732111 3567778887766 6999999999986 999999 99999999998764
|
| >2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A | Back alignment and structure |
|---|
Probab=95.69 E-value=0.04 Score=48.29 Aligned_cols=78 Identities=28% Similarity=0.303 Sum_probs=56.7
Q ss_pred HHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHH
Q 019244 189 KDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 268 (344)
Q Consensus 189 ~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~d 268 (344)
+.++.+++ -++.+....+++.++++.+.++|+|+++..+ . +...+..+++ . .++++. |+.|..+
T Consensus 53 ~~i~~~~~-~~~~~gag~vl~~d~~~~A~~~GAd~v~~~~-----~-----d~~v~~~~~~-~--g~~~i~--G~~t~~e 116 (207)
T 2yw3_A 53 EALKALRK-SGLLLGAGTVRSPKEAEAALEAGAAFLVSPG-----L-----LEEVAALAQA-R--GVPYLP--GVLTPTE 116 (207)
T ss_dssp HHHHHHTT-SSCEEEEESCCSHHHHHHHHHHTCSEEEESS-----C-----CHHHHHHHHH-H--TCCEEE--EECSHHH
T ss_pred HHHHHHhC-CCCEEEeCeEeeHHHHHHHHHcCCCEEEcCC-----C-----CHHHHHHHHH-h--CCCEEe--cCCCHHH
Confidence 45777777 5666666666788999999999999996531 1 2233333322 3 466665 4999999
Q ss_pred HHHHHHcCCCEEEE
Q 019244 269 VFKALALGASGIFI 282 (344)
Q Consensus 269 v~kalalGAd~V~i 282 (344)
+.++..+|||.|.+
T Consensus 117 ~~~A~~~Gad~v~~ 130 (207)
T 2yw3_A 117 VERALALGLSALKF 130 (207)
T ss_dssp HHHHHHTTCCEEEE
T ss_pred HHHHHHCCCCEEEE
Confidence 99999999999988
|
| >1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A | Back alignment and structure |
|---|
Probab=95.61 E-value=0.1 Score=51.28 Aligned_cols=90 Identities=22% Similarity=0.235 Sum_probs=67.3
Q ss_pred cHHHHHHHHHhcCCcEEEEee-cCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCC
Q 019244 187 SWKDVKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 265 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v-~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~ 265 (344)
+.++++.+|+.+++||+-|.- .++.+...+..+|||+|-+.-.- ++ ..++..|.+....+ .+.+++. ++|
T Consensus 96 s~~dL~~vr~~v~lPvLrKDFI~d~~Qi~ea~~~GAD~ILLi~a~---l~--~~~l~~l~~~a~~l--gm~~LvE--vh~ 166 (452)
T 1pii_A 96 SFNFLPIVSQIAPQPILCKDFIIDPYQIYLARYYQADACLLMLSV---LD--DDQYRQLAAVAHSL--EMGVLTE--VSN 166 (452)
T ss_dssp CTTHHHHHHHHCCSCEEEESCCCSHHHHHHHHHTTCSEEEEETTT---CC--HHHHHHHHHHHHHT--TCEEEEE--ECS
T ss_pred CHHHHHHHHHhcCCCeEEEeccCCHHHHHHHHHcCCCEEEEEccc---CC--HHHHHHHHHHHHHc--CCeEEEE--eCC
Confidence 567899999999999999984 55666777999999999885431 11 23444444444434 5666665 899
Q ss_pred HHHHHHHHHcCCCEEEEchH
Q 019244 266 GTDVFKALALGASGIFIGRP 285 (344)
Q Consensus 266 g~dv~kalalGAd~V~ig~~ 285 (344)
.+++.+|+.+||+.+++-..
T Consensus 167 ~eE~~~A~~lga~iIGinnr 186 (452)
T 1pii_A 167 EEEQERAIALGAKVVGINNR 186 (452)
T ss_dssp HHHHHHHHHTTCSEEEEESE
T ss_pred HHHHHHHHHCCCCEEEEeCC
Confidence 99999999999999998754
|
| >3m47_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, mutant I218A, LYAS; 1.20A {Methanothermobacter thermautotrophicusdelta H} SCOP: c.1.2.3 PDB: 3li1_A 3m5z_A 3lty_A 3ltp_A* 3g18_A* 3g1d_A* 3g1f_A* 3g1h_A* 3g1a_A* 3lv6_A* 1klz_A* 3g1y_A 3g22_A* 3g24_A* 3p5z_A* 3siz_A* 3sy5_A* 1loq_A* 1lor_A* 1kly_A* ... | Back alignment and structure |
|---|
Probab=95.57 E-value=0.018 Score=51.35 Aligned_cols=82 Identities=16% Similarity=0.120 Sum_probs=49.0
Q ss_pred HHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCH-HHHHHHHHcCCCEEEEchHHHHHh
Q 019244 212 DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGIFIGRPVVYSL 290 (344)
Q Consensus 212 ~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g-~dv~kalalGAd~V~ig~~~l~~~ 290 (344)
-++.+.+.|+++++++.+ ..+.+.++++..+.+.++ .+.||+-. .+. +++..|||.+.+||+++.+
T Consensus 142 ~a~~a~~~G~~GvV~~at----------~~~e~~~ir~~~~~~~~i-v~PGI~~~g~~p-~~~~aGad~iVvGr~I~~a- 208 (228)
T 3m47_A 142 IARMGVDLGVKNYVGPST----------RPERLSRLREIIGQDSFL-ISPGVGAQGGDP-GETLRFADAIIVGRSIYLA- 208 (228)
T ss_dssp HHHHHHHTTCCEEECCSS----------CHHHHHHHHHHHCSSSEE-EECC----------CGGGTCSEEEECHHHHTS-
T ss_pred HHHHHHHhCCcEEEECCC----------ChHHHHHHHHhcCCCCEE-EecCcCcCCCCH-hHHHcCCCEEEECHHHhCC-
Confidence 466788899999987531 234566677666544655 88898753 367 8899999999999997642
Q ss_pred hhcChHHHHHHHHHHHHHHHH
Q 019244 291 AAEGEKGVRRVLEMLREEFEL 311 (344)
Q Consensus 291 ~~~G~~~v~~~l~~l~~el~~ 311 (344)
.. ....++.++++++.
T Consensus 209 --~d---p~~a~~~~~~~~~~ 224 (228)
T 3m47_A 209 --DN---PAAAAAGAIESIKD 224 (228)
T ss_dssp --SC---HHHHHHHHHHHC--
T ss_pred --CC---HHHHHHHHHHHHHH
Confidence 11 23345556555543
|
| >1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=95.56 E-value=0.072 Score=48.25 Aligned_cols=72 Identities=22% Similarity=0.251 Sum_probs=57.2
Q ss_pred HHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHH
Q 019244 210 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 287 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l 287 (344)
.+.|+...++|+++|.|-.-.+. + ....+.|..+++.+ ++||+.-++|.+..++..++++|||+|.++...+
T Consensus 68 ~~~A~~~~~~GA~~isvlt~~~~-f---~G~~~~l~~i~~~v--~lPvl~kdfI~d~~qi~~a~~~GAD~VlL~~~~l 139 (254)
T 1vc4_A 68 VEAALAYARGGARAVSVLTEPHR-F---GGSLLDLKRVREAV--DLPLLRKDFVVDPFMLEEARAFGASAALLIVALL 139 (254)
T ss_dssp HHHHHHHHHTTCSEEEEECCCSS-S---CCCHHHHHHHHHHC--CSCEEEESCCCSHHHHHHHHHTTCSEEEEEHHHH
T ss_pred HHHHHHHHHcCCCEEEEecchhh-h---ccCHHHHHHHHHhc--CCCEEECCcCCCHHHHHHHHHcCCCEEEECccch
Confidence 46789999999999988432111 0 12456677777776 7999999999999999999999999999998765
|
| >3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A | Back alignment and structure |
|---|
Probab=95.47 E-value=0.069 Score=49.30 Aligned_cols=92 Identities=22% Similarity=0.359 Sum_probs=59.8
Q ss_pred HHHHHHcCCcEEEEccCCCCCCCCch-hhHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHcCCCEEEEchHHH
Q 019244 213 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 287 (344)
Q Consensus 213 a~~~~~~G~d~I~v~~~gG~~~~~g~-~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~k----alalGAd~V~ig~~~l 287 (344)
++.+++.|+++|.+.|+-|-...-.. .-.+.+..+.+.+.+++|||+.-|=.+-.++++ +-.+|||++++-.|++
T Consensus 29 v~~li~~Gv~gl~v~GttGE~~~Lt~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y 108 (292)
T 3daq_A 29 VNFLLENNAQAIIVNGTTAESPTLTTDEKELILKTVIDLVDKRVPVIAGTGTNDTEKSIQASIQAKALGADAIMLITPYY 108 (292)
T ss_dssp HHHHHHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCS
T ss_pred HHHHHHcCCCEEEECccccccccCCHHHHHHHHHHHHHHhCCCCcEEEeCCcccHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 34577899999999775442111111 123455556666667899999666566666664 3447999999999987
Q ss_pred HHhhhcChHHHHHHHHHHHH
Q 019244 288 YSLAAEGEKGVRRVLEMLRE 307 (344)
Q Consensus 288 ~~~~~~G~~~v~~~l~~l~~ 307 (344)
+.. .++++.++++.+.+
T Consensus 109 ~~~---~~~~l~~~f~~ia~ 125 (292)
T 3daq_A 109 NKT---NQRGLVKHFEAIAD 125 (292)
T ss_dssp SCC---CHHHHHHHHHHHHH
T ss_pred CCC---CHHHHHHHHHHHHH
Confidence 642 35666666555544
|
| >3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=95.36 E-value=0.11 Score=48.17 Aligned_cols=91 Identities=13% Similarity=0.218 Sum_probs=58.5
Q ss_pred HHHHHcCCcEEEEccCCCCCCCCch-hhHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHcCCCEEEEchHHHH
Q 019244 214 RIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVVY 288 (344)
Q Consensus 214 ~~~~~~G~d~I~v~~~gG~~~~~g~-~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~k----alalGAd~V~ig~~~l~ 288 (344)
+.+++.|+|+|.+.|+-|-...-.. .-.+.+..+.+.+.+++|||+--|=.+-.++++ +-.+|||++++-.|+++
T Consensus 44 ~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~st~~ai~la~~A~~~Gadavlv~~P~y~ 123 (304)
T 3cpr_A 44 AYLVDKGLDSLVLAGTTGESPTTTAAEKLELLKAVREEVGDRAKLIAGVGTNNTRTSVELAEAAASAGADGLLVVTPYYS 123 (304)
T ss_dssp HHHHHTTCCEEEESSTTTTTTTSCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCSS
T ss_pred HHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEecCCCCCHHHHHHHHHHHHhcCCCEEEECCCCCC
Confidence 4577899999999776553221111 123455556666667899998555555555553 33479999999999876
Q ss_pred HhhhcChHHHHHHHHHHHH
Q 019244 289 SLAAEGEKGVRRVLEMLRE 307 (344)
Q Consensus 289 ~~~~~G~~~v~~~l~~l~~ 307 (344)
.. .++++.++++.+.+
T Consensus 124 ~~---~~~~l~~~f~~ia~ 139 (304)
T 3cpr_A 124 KP---SQEGLLAHFGAIAA 139 (304)
T ss_dssp CC---CHHHHHHHHHHHHH
T ss_pred CC---CHHHHHHHHHHHHH
Confidence 42 35666666655543
|
| >3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A | Back alignment and structure |
|---|
Probab=95.35 E-value=0.036 Score=50.69 Aligned_cols=85 Identities=16% Similarity=0.091 Sum_probs=61.7
Q ss_pred cHHHHHHHHHhcCCcEEEEee-cCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCC
Q 019244 187 SWKDVKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 265 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v-~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~ 265 (344)
+.+.|++|++.+++||+-|-- .+..+|+.+.++|+|.|+-+. +-+ ..+....+.+. ..++|+++ |++|
T Consensus 56 dp~~I~~I~~aVsIPVm~k~righ~~EAqilea~GaD~IDese-vlt-------pad~~~~I~k~-~f~vpfv~--~~~~ 124 (291)
T 3o07_A 56 DPKMIKDIMNSVSIPVMAKVRIGHFVEAQIIEALEVDYIDESE-VLT-------PADWTHHIEKD-KFKVPFVC--GAKD 124 (291)
T ss_dssp CHHHHHHHHTTCSSCEEEEEETTCHHHHHHHHHTTCSEEEEET-TSC-------CSCSSCCCCGG-GCSSCEEE--EESS
T ss_pred CHHHHHHHHHhCCCCeEEEEecCcHHHHHHHHHcCCCEEeccc-CCC-------HHHHHHHhhhh-cCCCcEEe--eCCC
Confidence 467899999999999999975 568899999999999997652 111 11111111111 11466665 6899
Q ss_pred HHHHHHHHHcCCCEEEE
Q 019244 266 GTDVFKALALGASGIFI 282 (344)
Q Consensus 266 g~dv~kalalGAd~V~i 282 (344)
-.+++.++..||+.+..
T Consensus 125 l~EAlrri~eGA~mIrT 141 (291)
T 3o07_A 125 LGEALRRINEGAAMIRT 141 (291)
T ss_dssp HHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHCCCCEEEe
Confidence 99999999999999875
|
| >3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus} | Back alignment and structure |
|---|
Probab=95.35 E-value=0.02 Score=51.46 Aligned_cols=79 Identities=9% Similarity=-0.109 Sum_probs=53.9
Q ss_pred CHHHHHHHHHcCCcEEEE-ccCCCC-CCCCchhhHHHHHHHHHHccC---CCcEEEecCCCCHHHHHHHHH--cCCCEEE
Q 019244 209 TAEDARIAVQAGAAGIIV-SNHGAR-QLDYVPATIMALEEVVKATQG---RIPVFLDGGVRRGTDVFKALA--LGASGIF 281 (344)
Q Consensus 209 ~~~~a~~~~~~G~d~I~v-~~~gG~-~~~~g~~~~~~l~~i~~~~~~---~~~via~GGIr~g~dv~kala--lGAd~V~ 281 (344)
|+.+.......++|.|.+ +-+.|. +..+.+..++-+.++++.... +++|.++|||. .+.+.++.. .|||.+.
T Consensus 137 Tp~~~l~~~l~~~D~vlvMsv~pgfggq~f~~~~l~ki~~lr~~~~~~~~~~~I~vdGGI~-~~~~~~~~~~~aGad~~V 215 (237)
T 3cu2_A 137 TPISELEPYLDQIDVIQLLTLDPRNGTKYPSELILDRVIQVEKRLGNRRVEKLINIDGSMT-LELAKYFKQGTHQIDWLV 215 (237)
T ss_dssp SCGGGGTTTTTTCSEEEEESEETTTTEECCHHHHHHHHHHHHHHHGGGGGGCEEEEESSCC-HHHHHHHHHSSSCCCCEE
T ss_pred ChHHHHHHHhhcCceeeeeeeccCcCCeecChhHHHHHHHHHHHHHhcCCCceEEEECCcC-HHHHHHHHHhCCCCcEEE
Confidence 444443333458998866 222221 112345556667777766532 58999999998 788999999 9999999
Q ss_pred EchHHHH
Q 019244 282 IGRPVVY 288 (344)
Q Consensus 282 ig~~~l~ 288 (344)
+||.++.
T Consensus 216 vGSaIf~ 222 (237)
T 3cu2_A 216 SGSALFS 222 (237)
T ss_dssp ECGGGGS
T ss_pred EeeHHhC
Confidence 9999874
|
| >1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A | Back alignment and structure |
|---|
Probab=95.34 E-value=0.083 Score=48.02 Aligned_cols=42 Identities=21% Similarity=0.479 Sum_probs=37.0
Q ss_pred cHHHHHHHHHhcCCcEEEEe-ecCHHHHHHHHHcCCcEEEEcc
Q 019244 187 SWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSN 228 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~-v~~~~~a~~~~~~G~d~I~v~~ 228 (344)
.++.++++++..++||++.+ +.+++++..+.++|+|+|.|.+
T Consensus 166 ~~~~l~~i~~~~~iPviv~gGI~t~eda~~~~~~GAdgViVGS 208 (264)
T 1xm3_A 166 NPLNLSFIIEQAKVPVIVDAGIGSPKDAAYAMELGADGVLLNT 208 (264)
T ss_dssp CHHHHHHHHHHCSSCBEEESCCCSHHHHHHHHHTTCSEEEESH
T ss_pred CHHHHHHHHhcCCCCEEEEeCCCCHHHHHHHHHcCCCEEEEcH
Confidence 47789999998899999985 5689999999999999999964
|
| >1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=95.33 E-value=0.38 Score=43.70 Aligned_cols=97 Identities=22% Similarity=0.352 Sum_probs=61.2
Q ss_pred cHHHHHHHHHhcCCcEEEEeec--CHHHHHH----HHHcCCcEEEEccCCCCCC-CC--chhhHHHHHHHHHHccCCCcE
Q 019244 187 SWKDVKWLQTITKLPILVKGVL--TAEDARI----AVQAGAAGIIVSNHGARQL-DY--VPATIMALEEVVKATQGRIPV 257 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v~--~~~~a~~----~~~~G~d~I~v~~~gG~~~-~~--g~~~~~~l~~i~~~~~~~~~v 257 (344)
+...++++.+ +++||++|..+ +.+++.. +...|..-+.+--.|++.. .. -...+.+++.+++.. .+||
T Consensus 119 n~~ll~~~a~-~~kPV~lk~G~~~t~~e~~~Av~~i~~~Gn~~i~L~~RG~~~~~~y~~~~v~L~ai~~lk~~~--~~pV 195 (262)
T 1zco_A 119 NFELLKEVGK-VENPVLLKRGMGNTIQELLYSAEYIMAQGNENVILCERGIRTFETATRFTLDISAVPVVKELS--HLPI 195 (262)
T ss_dssp CHHHHHHHTT-SSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECCBCCSCCSSSSBCCTTHHHHHHHHB--SSCE
T ss_pred CHHHHHHHHh-cCCcEEEecCCCCCHHHHHHHHHHHHHCCCCeEEEEECCCCCCCCcChhhcCHHHHHHHHhhh--CCCE
Confidence 3456777777 69999999874 6777544 4467876666654454432 11 112344666666554 5899
Q ss_pred EEecCCCCHH-----H-HHHHHHcCCCEEEEchHH
Q 019244 258 FLDGGVRRGT-----D-VFKALALGASGIFIGRPV 286 (344)
Q Consensus 258 ia~GGIr~g~-----d-v~kalalGAd~V~ig~~~ 286 (344)
+++..=.+|. . +..+.++||++++|-+.+
T Consensus 196 i~d~sH~~g~~~~v~~~~~aAva~Ga~Gl~iE~H~ 230 (262)
T 1zco_A 196 IVDPSHPAGRRSLVIPLAKAAYAIGADGIMVEVHP 230 (262)
T ss_dssp EECSSTTTCSGGGHHHHHHHHHHTTCSEEEEEBCS
T ss_pred EEEcCCCCCccchHHHHHHHHHHcCCCEEEEEecC
Confidence 8865433333 4 334778999999999875
|
| >3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A | Back alignment and structure |
|---|
Probab=95.32 E-value=0.09 Score=48.49 Aligned_cols=91 Identities=15% Similarity=0.310 Sum_probs=58.8
Q ss_pred HHHHHcCCcEEEEccCCCCCCCCch-hhHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHcCCCEEEEchHHHH
Q 019244 214 RIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVVY 288 (344)
Q Consensus 214 ~~~~~~G~d~I~v~~~gG~~~~~g~-~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~k----alalGAd~V~ig~~~l~ 288 (344)
+.+++.|+++|.+.|+-|-...-.. .-.+.+..+.+...+++|||+--|=.+-.++++ +-.+|||++++-.|+++
T Consensus 29 ~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~ 108 (291)
T 3tak_A 29 EWHIEQGTNSIVAVGTTGEASTLSMEEHTQVIKEIIRVANKRIPIIAGTGANSTREAIELTKAAKDLGADAALLVTPYYN 108 (291)
T ss_dssp HHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECCCSS
T ss_pred HHHHHCCCCEEEECccccccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCC
Confidence 4577899999999776443111111 123455556666667899999656556666654 44589999999999876
Q ss_pred HhhhcChHHHHHHHHHHHH
Q 019244 289 SLAAEGEKGVRRVLEMLRE 307 (344)
Q Consensus 289 ~~~~~G~~~v~~~l~~l~~ 307 (344)
.. .++++.++++.+.+
T Consensus 109 ~~---~~~~l~~~f~~ia~ 124 (291)
T 3tak_A 109 KP---TQEGLYQHYKAIAE 124 (291)
T ss_dssp CC---CHHHHHHHHHHHHH
T ss_pred CC---CHHHHHHHHHHHHH
Confidence 42 35666555555443
|
| >1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A* | Back alignment and structure |
|---|
Probab=95.26 E-value=0.1 Score=48.41 Aligned_cols=90 Identities=14% Similarity=0.301 Sum_probs=56.9
Q ss_pred HHHHHcCCcEEEEccCCCCCCCCch-hhHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHcCCCEEEEchHHHH
Q 019244 214 RIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVVY 288 (344)
Q Consensus 214 ~~~~~~G~d~I~v~~~gG~~~~~g~-~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~k----alalGAd~V~ig~~~l~ 288 (344)
+.+++.|+++|.+.|+-|-...-.. .-.+.+..+.+.+.+++|||+--|=.+-.++++ |-.+|||++++-.|+++
T Consensus 40 ~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~ 119 (301)
T 1xky_A 40 NYLIDNGTTAIVVGGTTGESPTLTSEEKVALYRHVVSVVDKRVPVIAGTGSNNTHASIDLTKKATEVGVDAVMLVAPYYN 119 (301)
T ss_dssp HHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCSS
T ss_pred HHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCceEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCC
Confidence 3567899999999775443111111 123455556666667899998555555555553 33479999999999876
Q ss_pred HhhhcChHHHHHHHHHHH
Q 019244 289 SLAAEGEKGVRRVLEMLR 306 (344)
Q Consensus 289 ~~~~~G~~~v~~~l~~l~ 306 (344)
.. .++++.++++.+.
T Consensus 120 ~~---s~~~l~~~f~~va 134 (301)
T 1xky_A 120 KP---SQEGMYQHFKAIA 134 (301)
T ss_dssp CC---CHHHHHHHHHHHH
T ss_pred CC---CHHHHHHHHHHHH
Confidence 42 4556555555443
|
| >3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=95.19 E-value=0.085 Score=49.30 Aligned_cols=91 Identities=14% Similarity=0.245 Sum_probs=58.8
Q ss_pred HHHHHcCCcEEEEccCCCCCCCCch-hhHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHcCCCEEEEchHHHH
Q 019244 214 RIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVVY 288 (344)
Q Consensus 214 ~~~~~~G~d~I~v~~~gG~~~~~g~-~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~k----alalGAd~V~ig~~~l~ 288 (344)
+.+++.|+|+|.+.|+-|-...-.. .-.+.+..+.+.+.+++|||+--|=.+-.++++ +-.+|||++++-.|+++
T Consensus 50 ~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~~st~~ai~la~~A~~~Gadavlv~~P~y~ 129 (315)
T 3si9_A 50 EWQITQGINGVSPVGTTGESPTLTHEEHKRIIELCVEQVAKRVPVVAGAGSNSTSEAVELAKHAEKAGADAVLVVTPYYN 129 (315)
T ss_dssp HHHHHTTCSEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSS
T ss_pred HHHHHcCCCEEEeCccccCccccCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCEEEECCCCCC
Confidence 3577899999999775443111111 123455566666667899999656556666654 44589999999999876
Q ss_pred HhhhcChHHHHHHHHHHHH
Q 019244 289 SLAAEGEKGVRRVLEMLRE 307 (344)
Q Consensus 289 ~~~~~G~~~v~~~l~~l~~ 307 (344)
.. .++++.++++.+.+
T Consensus 130 ~~---~~~~l~~~f~~va~ 145 (315)
T 3si9_A 130 RP---NQRGLYTHFSSIAK 145 (315)
T ss_dssp CC---CHHHHHHHHHHHHH
T ss_pred CC---CHHHHHHHHHHHHH
Confidence 42 35565555555443
|
| >3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=95.18 E-value=0.12 Score=47.90 Aligned_cols=91 Identities=19% Similarity=0.280 Sum_probs=58.2
Q ss_pred HHHHHcCCcEEEEccCCCCCCCCch-hhHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHcCCCEEEEchHHHH
Q 019244 214 RIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVVY 288 (344)
Q Consensus 214 ~~~~~~G~d~I~v~~~gG~~~~~g~-~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~k----alalGAd~V~ig~~~l~ 288 (344)
+.+++.|+++|.+.|+-|-...-.. .-.+.+..+.+.+.+++|||+--|=.+-.++++ +-.+|||++++-.|+++
T Consensus 35 ~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~ 114 (297)
T 3flu_A 35 DWHIENGTDGIVAVGTTGESATLSVEEHTAVIEAVVKHVAKRVPVIAGTGANNTVEAIALSQAAEKAGADYTLSVVPYYN 114 (297)
T ss_dssp HHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSS
T ss_pred HHHHHcCCCEEEeCccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHHcCCCEEEECCCCCC
Confidence 3467899999999776543211111 123455556666667899999555555666553 33589999999999876
Q ss_pred HhhhcChHHHHHHHHHHHH
Q 019244 289 SLAAEGEKGVRRVLEMLRE 307 (344)
Q Consensus 289 ~~~~~G~~~v~~~l~~l~~ 307 (344)
.. .++++.++++.+.+
T Consensus 115 ~~---~~~~l~~~f~~va~ 130 (297)
T 3flu_A 115 KP---SQEGIYQHFKTIAE 130 (297)
T ss_dssp CC---CHHHHHHHHHHHHH
T ss_pred CC---CHHHHHHHHHHHHH
Confidence 42 35566555555443
|
| >3ru6_A Orotidine 5'-phosphate decarboxylase; structural genomics, center for structural genomics of infec diseases (csgid), TIM-barrel; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=95.17 E-value=0.039 Score=51.34 Aligned_cols=63 Identities=21% Similarity=0.243 Sum_probs=45.8
Q ss_pred HHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHH----------HHHHHHHcCCCEEE
Q 019244 212 DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT----------DVFKALALGASGIF 281 (344)
Q Consensus 212 ~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~----------dv~kalalGAd~V~ 281 (344)
.|+.+.++|+++++++.+ - +..+++.++ .-.++.++|||-.. .+.+++..|||.+.
T Consensus 163 lA~~a~~~G~dGvV~s~~----------E---~~~IR~~~~-~~fl~VTPGIr~qG~~~~DQ~Rv~t~~~a~~aGAd~iV 228 (303)
T 3ru6_A 163 FSKISYENGLDGMVCSVF----------E---SKKIKEHTS-SNFLTLTPGIRPFGETNDDQKRVANLAMARENLSDYIV 228 (303)
T ss_dssp HHHHHHHTTCSEEECCTT----------T---HHHHHHHSC-TTSEEEECCCCTTC--------CCSHHHHHHTTCSEEE
T ss_pred HHHHHHHcCCCEEEECHH----------H---HHHHHHhCC-CccEEECCCcCcccCCcccccccCCHHHHHHcCCCEEE
Confidence 466778899999987432 1 345566654 33488899999432 36677889999999
Q ss_pred EchHHHH
Q 019244 282 IGRPVVY 288 (344)
Q Consensus 282 ig~~~l~ 288 (344)
+||+++.
T Consensus 229 vGr~I~~ 235 (303)
T 3ru6_A 229 VGRPIYK 235 (303)
T ss_dssp ECHHHHT
T ss_pred EChHHhC
Confidence 9999875
|
| >2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A | Back alignment and structure |
|---|
Probab=95.16 E-value=0.11 Score=48.22 Aligned_cols=93 Identities=15% Similarity=0.190 Sum_probs=60.1
Q ss_pred HHHHHcCCcEEEEccCCCCCCCCch-hhHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHcCCCEEEEchHHHH
Q 019244 214 RIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVVY 288 (344)
Q Consensus 214 ~~~~~~G~d~I~v~~~gG~~~~~g~-~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~k----alalGAd~V~ig~~~l~ 288 (344)
+.+++.|+++|.+.|+-|-...-.. .-.+.+..+.+.+.+++|||+--|=.+-.++++ +-.+|||++++-.|+++
T Consensus 39 ~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~ 118 (303)
T 2wkj_A 39 QFNIQQGIDGLYVGGSTGEAFVQSLSEREQVLEIVAEEAKGKIKLIAHVGCVSTAESQQLAASAKRYGFDAVSAVTPFYY 118 (303)
T ss_dssp HHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECCCSS
T ss_pred HHHHHcCCCEEEECeeccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhCCCCEEEecCCCCC
Confidence 3567899999999775443111111 123455556666667899998555445555543 33479999999999886
Q ss_pred HhhhcChHHHHHHHHHHHHHH
Q 019244 289 SLAAEGEKGVRRVLEMLREEF 309 (344)
Q Consensus 289 ~~~~~G~~~v~~~l~~l~~el 309 (344)
.. .++++.++++.+.+..
T Consensus 119 ~~---s~~~l~~~f~~va~a~ 136 (303)
T 2wkj_A 119 PF---SFEEHCDHYRAIIDSA 136 (303)
T ss_dssp CC---CHHHHHHHHHHHHHHH
T ss_pred CC---CHHHHHHHHHHHHHhC
Confidence 42 4677777777665543
|
| >1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A* | Back alignment and structure |
|---|
Probab=95.14 E-value=0.11 Score=47.99 Aligned_cols=92 Identities=12% Similarity=0.172 Sum_probs=59.1
Q ss_pred HHHHH-cCCcEEEEccCCCCCCCCch-hhHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHcCCCEEEEchHHH
Q 019244 214 RIAVQ-AGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 287 (344)
Q Consensus 214 ~~~~~-~G~d~I~v~~~gG~~~~~g~-~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~k----alalGAd~V~ig~~~l 287 (344)
+.+++ .|+|+|.+.|+-|-...-.. .-.+.+..+.+.+.+++|||+--|=.+-.++++ +-.+|||++++-.|++
T Consensus 31 ~~li~~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y 110 (293)
T 1f6k_A 31 RHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGYDCLSAVTPFY 110 (293)
T ss_dssp HHHHHTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCS
T ss_pred HHHHhhCCCcEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCC
Confidence 45778 99999999775442111111 123455556666667899998655555566553 3347999999999988
Q ss_pred HHhhhcChHHHHHHHHHHHHH
Q 019244 288 YSLAAEGEKGVRRVLEMLREE 308 (344)
Q Consensus 288 ~~~~~~G~~~v~~~l~~l~~e 308 (344)
+.. .++++.++++.+.+.
T Consensus 111 ~~~---~~~~l~~~f~~va~a 128 (293)
T 1f6k_A 111 YKF---SFPEIKHYYDTIIAE 128 (293)
T ss_dssp SCC---CHHHHHHHHHHHHHH
T ss_pred CCC---CHHHHHHHHHHHHHh
Confidence 642 356666666655443
|
| >2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A* | Back alignment and structure |
|---|
Probab=95.14 E-value=0.083 Score=45.94 Aligned_cols=79 Identities=19% Similarity=0.214 Sum_probs=56.2
Q ss_pred HHHHHHHHhcCCcEEEEe--ecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCH
Q 019244 189 KDVKWLQTITKLPILVKG--VLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 266 (344)
Q Consensus 189 ~~i~~i~~~~~~PvivK~--v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g 266 (344)
+.++++++.+++|++++. +.+.+.+..+.++|+|+|.+.. .....+. .++.. ..+++.. +.|.
T Consensus 47 ~~i~~i~~~~~~~l~vg~g~~~~~~~i~~a~~~Gad~V~~~~----------~~~~~~~-~~~~~--g~~~~~g--~~t~ 111 (212)
T 2v82_A 47 QSIPAIVDAYGDKALIGAGTVLKPEQVDALARMGCQLIVTPN----------IHSEVIR-RAVGY--GMTVCPG--CATA 111 (212)
T ss_dssp HHHHHHHHHHTTTSEEEEECCCSHHHHHHHHHTTCCEEECSS----------CCHHHHH-HHHHT--TCEEECE--ECSH
T ss_pred HHHHHHHHhCCCCeEEEeccccCHHHHHHHHHcCCCEEEeCC----------CCHHHHH-HHHHc--CCCEEee--cCCH
Confidence 467777777788888743 4678899999999999996421 1122332 23333 3555543 8999
Q ss_pred HHHHHHHHcCCCEEEE
Q 019244 267 TDVFKALALGASGIFI 282 (344)
Q Consensus 267 ~dv~kalalGAd~V~i 282 (344)
.++.++..+|+|.|.+
T Consensus 112 ~e~~~a~~~G~d~v~v 127 (212)
T 2v82_A 112 TEAFTALEAGAQALKI 127 (212)
T ss_dssp HHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHCCCCEEEE
Confidence 9999999999999987
|
| >3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=95.14 E-value=0.14 Score=46.88 Aligned_cols=71 Identities=21% Similarity=0.184 Sum_probs=56.7
Q ss_pred HHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHH
Q 019244 211 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 287 (344)
Q Consensus 211 ~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l 287 (344)
+.|+...+.||++|.|-.-.+. ++ ...+.|..+++.+ ++||+.-..|.+..++..+.++|||+|.+....+
T Consensus 83 ~~A~~y~~~GA~~IsVltd~~~---f~-Gs~~~L~~ir~~v--~lPVl~Kdfi~d~~qi~ea~~~GAD~VlLi~a~L 153 (272)
T 3tsm_A 83 ALAKAYEEGGAACLSVLTDTPS---FQ-GAPEFLTAARQAC--SLPALRKDFLFDPYQVYEARSWGADCILIIMASV 153 (272)
T ss_dssp HHHHHHHHTTCSEEEEECCSTT---TC-CCHHHHHHHHHTS--SSCEEEESCCCSTHHHHHHHHTTCSEEEEETTTS
T ss_pred HHHHHHHHCCCCEEEEeccccc---cC-CCHHHHHHHHHhc--CCCEEECCccCCHHHHHHHHHcCCCEEEEccccc
Confidence 6688899999999988542211 11 2456777787776 7999999999999999999999999999998765
|
| >3tfx_A Orotidine 5'-phosphate decarboxylase; PSI-biology, nysgrc, 000529, structural genomics, NEW YORK S genomics research consortium; 2.19A {Lactobacillus acidophilus} | Back alignment and structure |
|---|
Probab=95.13 E-value=0.058 Score=49.05 Aligned_cols=79 Identities=24% Similarity=0.449 Sum_probs=52.4
Q ss_pred HHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHH----------HHHHHHcCCCEEE
Q 019244 212 DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD----------VFKALALGASGIF 281 (344)
Q Consensus 212 ~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~d----------v~kalalGAd~V~ 281 (344)
-|+.+.++|+|+++++. .-+..+++.++ .--++.+.|||-..+ +.+++..|||.+.
T Consensus 149 ~A~~a~~~G~dGvV~s~-------------~e~~~ir~~~~-~~f~~vtPGIr~~g~~~gDQ~Rv~T~~~a~~aGad~iV 214 (259)
T 3tfx_A 149 LAKMAKHSGADGVICSP-------------LEVKKLHENIG-DDFLYVTPGIRPAGNAKDDQSRVATPKMAKEWGSSAIV 214 (259)
T ss_dssp HHHHHHHTTCCEEECCG-------------GGHHHHHHHHC-SSSEEEECCCCCC-----------CHHHHHHTTCSEEE
T ss_pred HHHHHHHhCCCEEEECH-------------HHHHHHHhhcC-CccEEEcCCcCCCCCCcCCccccCCHHHHHHcCCCEEE
Confidence 36667889999998752 12344455554 334788999996432 7788999999999
Q ss_pred EchHHHHHhhhcChHHHHHHHHHHHHHHH
Q 019244 282 IGRPVVYSLAAEGEKGVRRVLEMLREEFE 310 (344)
Q Consensus 282 ig~~~l~~~~~~G~~~v~~~l~~l~~el~ 310 (344)
+||+++.+ +.....++.++++++
T Consensus 215 vGr~I~~a------~dp~~a~~~i~~~~~ 237 (259)
T 3tfx_A 215 VGRPITLA------SDPKAAYEAIKKEFN 237 (259)
T ss_dssp ECHHHHTS------SSHHHHHHHHHHHHT
T ss_pred EChHHhCC------CCHHHHHHHHHHHHH
Confidence 99998753 122245566666654
|
| >3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A | Back alignment and structure |
|---|
Probab=95.11 E-value=0.088 Score=48.92 Aligned_cols=89 Identities=20% Similarity=0.306 Sum_probs=57.5
Q ss_pred HHHHHcCCcEEEEccCCCCCCCCch-hhHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHcCCCEEEEchHHHH
Q 019244 214 RIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVVY 288 (344)
Q Consensus 214 ~~~~~~G~d~I~v~~~gG~~~~~g~-~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~k----alalGAd~V~ig~~~l~ 288 (344)
+.+++.|+|+|.+.|+-|-...-.. .-.+.+..+.+.+.+++|||+.-|=.+-.++++ +-.+|||++++-.|+++
T Consensus 43 ~~li~~Gv~gi~v~GttGE~~~Lt~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~ 122 (304)
T 3l21_A 43 NHLVDQGCDGLVVSGTTGESPTTTDGEKIELLRAVLEAVGDRARVIAGAGTYDTAHSIRLAKACAAEGAHGLLVVTPYYS 122 (304)
T ss_dssp HHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSS
T ss_pred HHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCC
Confidence 3477899999999776543111111 123455666666677999999666556666654 33479999999999876
Q ss_pred HhhhcChHHHHHHHHHH
Q 019244 289 SLAAEGEKGVRRVLEML 305 (344)
Q Consensus 289 ~~~~~G~~~v~~~l~~l 305 (344)
.. .++++.++++.+
T Consensus 123 ~~---s~~~l~~~f~~v 136 (304)
T 3l21_A 123 KP---PQRGLQAHFTAV 136 (304)
T ss_dssp CC---CHHHHHHHHHHH
T ss_pred CC---CHHHHHHHHHHH
Confidence 42 345555555444
|
| >1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=95.05 E-value=0.15 Score=44.93 Aligned_cols=89 Identities=18% Similarity=0.142 Sum_probs=62.1
Q ss_pred HHHHHHHHHhcCCcEEE--E-e-------e-cCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCc
Q 019244 188 WKDVKWLQTITKLPILV--K-G-------V-LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIP 256 (344)
Q Consensus 188 ~~~i~~i~~~~~~Pviv--K-~-------v-~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~ 256 (344)
.+.++.+++.+++|++- | . + .+.+.++.+.++|+|.|.+...--...+ +....+.+..+++..+ .++
T Consensus 58 ~~~i~~i~~~~~~p~i~~~~~~~~~~~~~i~~~~~~i~~~~~~Gad~V~l~~~~~~~~~-~~~~~~~i~~i~~~~~-~~~ 135 (234)
T 1yxy_A 58 VRDIKEIQAITDLPIIGIIKKDYPPQEPFITATMTEVDQLAALNIAVIAMDCTKRDRHD-GLDIASFIRQVKEKYP-NQL 135 (234)
T ss_dssp HHHHHHHHTTCCSCEEEECBCCCTTSCCCBSCSHHHHHHHHTTTCSEEEEECCSSCCTT-CCCHHHHHHHHHHHCT-TCE
T ss_pred HHHHHHHHHhCCCCEEeeEcCCCCccccccCChHHHHHHHHHcCCCEEEEcccccCCCC-CccHHHHHHHHHHhCC-CCe
Confidence 46799999999999842 1 1 1 2467899999999999988643110000 1123466777776653 455
Q ss_pred EEEecCCCCHHHHHHHHHcCCCEE
Q 019244 257 VFLDGGVRRGTDVFKALALGASGI 280 (344)
Q Consensus 257 via~GGIr~g~dv~kalalGAd~V 280 (344)
++. ++++..++.++..+|||.|
T Consensus 136 v~~--~~~t~~ea~~a~~~Gad~i 157 (234)
T 1yxy_A 136 LMA--DISTFDEGLVAHQAGIDFV 157 (234)
T ss_dssp EEE--ECSSHHHHHHHHHTTCSEE
T ss_pred EEE--eCCCHHHHHHHHHcCCCEE
Confidence 554 6889999999999999999
|
| >2pgw_A Muconate cycloisomerase; enolase superfamily, octamer, small metabolism, PSI-II, NYSGXRC, structural genomics, PR structure initiative; 1.95A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.04 E-value=0.78 Score=43.63 Aligned_cols=89 Identities=19% Similarity=0.105 Sum_probs=66.4
Q ss_pred HHHHHHHHHhc-CCcEEEEee--cCHHHH----HHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEe
Q 019244 188 WKDVKWLQTIT-KLPILVKGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD 260 (344)
Q Consensus 188 ~~~i~~i~~~~-~~PvivK~v--~~~~~a----~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~ 260 (344)
.+.++.+|+.+ ++|+.+..- .+.+++ +.+.+.|+++|.-- ..+..++.+.++++.+ ++||+++
T Consensus 178 ~e~v~avr~a~gd~~l~vD~n~~~~~~~a~~~~~~l~~~~i~~iEqP--------~~~~~~~~~~~l~~~~--~iPI~~d 247 (384)
T 2pgw_A 178 LEITAAVRGEIGDARLRLDANEGWSVHDAINMCRKLEKYDIEFIEQP--------TVSWSIPAMAHVREKV--GIPIVAD 247 (384)
T ss_dssp HHHHHHHHTTSTTCEEEEECTTCCCHHHHHHHHHHHGGGCCSEEECC--------SCTTCHHHHHHHHHHC--SSCEEES
T ss_pred HHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHhcCCCEEeCC--------CChhhHHHHHHHHhhC--CCCEEEe
Confidence 45688888877 577777642 455553 55667899988521 1234677788888776 7999999
Q ss_pred cCCCCHHHHHHHHHcC-CCEEEEchHH
Q 019244 261 GGVRRGTDVFKALALG-ASGIFIGRPV 286 (344)
Q Consensus 261 GGIr~g~dv~kalalG-Ad~V~ig~~~ 286 (344)
+.+.+..|+.+++..| +|.|++....
T Consensus 248 e~i~~~~~~~~~i~~~~~d~v~ik~~~ 274 (384)
T 2pgw_A 248 QAAFTLYDVYEICRQRAADMICIGPRE 274 (384)
T ss_dssp TTCCSHHHHHHHHHTTCCSEEEECHHH
T ss_pred CCcCCHHHHHHHHHcCCCCEEEEcchh
Confidence 9999999999999987 8999997543
|
| >3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=95.02 E-value=0.089 Score=49.17 Aligned_cols=91 Identities=14% Similarity=0.134 Sum_probs=58.4
Q ss_pred HHHHHcCCcEEEEccCCCCCCCCch-hhHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHcCCCEEEEchHHHH
Q 019244 214 RIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVVY 288 (344)
Q Consensus 214 ~~~~~~G~d~I~v~~~gG~~~~~g~-~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~k----alalGAd~V~ig~~~l~ 288 (344)
+.+++.|+|+|.+.|+-|-...-.. .-.+.+..+.+.+.+++|||+--|=.+-.|+++ +-.+|||++++-.|+++
T Consensus 52 ~~li~~Gv~Gi~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~ 131 (315)
T 3na8_A 52 ERLIDGGVHAIAPLGSTGEGAYLSDPEWDEVVDFTLKTVAHRVPTIVSVSDLTTAKTVRRAQFAESLGAEAVMVLPISYW 131 (315)
T ss_dssp HHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEECCCCSS
T ss_pred HHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCC
Confidence 4577899999999775442111111 123455556666667899999656556666554 44589999999999887
Q ss_pred HhhhcChHHHHHHHHHHHH
Q 019244 289 SLAAEGEKGVRRVLEMLRE 307 (344)
Q Consensus 289 ~~~~~G~~~v~~~l~~l~~ 307 (344)
.. .++++.++++.+.+
T Consensus 132 ~~---s~~~l~~~f~~va~ 147 (315)
T 3na8_A 132 KL---NEAEVFQHYRAVGE 147 (315)
T ss_dssp CC---CHHHHHHHHHHHHH
T ss_pred CC---CHHHHHHHHHHHHH
Confidence 42 34565555555433
|
| >3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=95.01 E-value=0.1 Score=48.20 Aligned_cols=92 Identities=14% Similarity=0.164 Sum_probs=59.3
Q ss_pred HHHHHcCCcEEEEccCCCCCCCCch-hhHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHcCCCEEEEchHHHH
Q 019244 214 RIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVVY 288 (344)
Q Consensus 214 ~~~~~~G~d~I~v~~~gG~~~~~g~-~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~k----alalGAd~V~ig~~~l~ 288 (344)
+.+++.|+++|.+.|+-|-...-.. .-.+.+..+.+.+.+++|||+.-|=.+-.++++ +-.+|||++++-.|+++
T Consensus 31 ~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~ 110 (294)
T 3b4u_A 31 RRCLSNGCDSVTLFGTTGEGCSVGSRERQAILSSFIAAGIAPSRIVTGVLVDSIEDAADQSAEALNAGARNILLAPPSYF 110 (294)
T ss_dssp HHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHTTCCGGGEEEEECCSSHHHHHHHHHHHHHTTCSEEEECCCCSS
T ss_pred HHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCccHHHHHHHHHHHHhcCCCEEEEcCCcCC
Confidence 4577899999999776443111111 123455555666667899998555545555543 33479999999999886
Q ss_pred H-hhhcChHHHHHHHHHHHHH
Q 019244 289 S-LAAEGEKGVRRVLEMLREE 308 (344)
Q Consensus 289 ~-~~~~G~~~v~~~l~~l~~e 308 (344)
. . .++++.++++.+.+.
T Consensus 111 ~~~---s~~~l~~~f~~va~a 128 (294)
T 3b4u_A 111 KNV---SDDGLFAWFSAVFSK 128 (294)
T ss_dssp CSC---CHHHHHHHHHHHHHH
T ss_pred CCC---CHHHHHHHHHHHHHh
Confidence 4 2 456776666666554
|
| >2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661} | Back alignment and structure |
|---|
Probab=95.00 E-value=0.13 Score=47.42 Aligned_cols=92 Identities=18% Similarity=0.325 Sum_probs=58.3
Q ss_pred HHHHHHcCCcEEEEccCCCCCCCCch-hhHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHcCCCEEEEchHHH
Q 019244 213 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 287 (344)
Q Consensus 213 a~~~~~~G~d~I~v~~~gG~~~~~g~-~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~k----alalGAd~V~ig~~~l 287 (344)
++.+++.|+|+|.+.|+-|-...-.. .-.+.+..+.+.+.+++|||+--|=.+-.++++ +-.+|||++++-.|++
T Consensus 27 v~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y 106 (289)
T 2yxg_A 27 INFLIENGVSGIVAVGTTGESPTLSHEEHKKVIEKVVDVVNGRVQVIAGAGSNCTEEAIELSVFAEDVGADAVLSITPYY 106 (289)
T ss_dssp HHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECCCS
T ss_pred HHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCEEEECCCCC
Confidence 45678899999999776443111111 123455556666667899998555545555543 3347999999999987
Q ss_pred HHhhhcChHHHHHHHHHHHH
Q 019244 288 YSLAAEGEKGVRRVLEMLRE 307 (344)
Q Consensus 288 ~~~~~~G~~~v~~~l~~l~~ 307 (344)
+.. .++++.++++.+.+
T Consensus 107 ~~~---s~~~l~~~f~~ia~ 123 (289)
T 2yxg_A 107 NKP---TQEGLRKHFGKVAE 123 (289)
T ss_dssp SCC---CHHHHHHHHHHHHH
T ss_pred CCC---CHHHHHHHHHHHHH
Confidence 642 45666666555443
|
| >2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=95.00 E-value=1.8 Score=38.30 Aligned_cols=96 Identities=17% Similarity=0.233 Sum_probs=58.5
Q ss_pred CcHHHHHHHHHhc-CCcEEEEee------cCH-HHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcE
Q 019244 186 LSWKDVKWLQTIT-KLPILVKGV------LTA-EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 257 (344)
Q Consensus 186 ~~~~~i~~i~~~~-~~PvivK~v------~~~-~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~v 257 (344)
++.+.++++.+.. ++|+.+--. .++ +..+++.+.|++.|-.|| |..-......++.|.++.+...+++.|
T Consensus 104 iD~~~~~~Li~~a~~~~vTFHRAFD~~~~~d~~~ale~L~~lGv~rILTSG--~~~~~~a~~g~~~L~~Lv~~a~~ri~I 181 (224)
T 2bdq_A 104 IDTEAIEQLLPATQGLPLVFHMAFDVIPKSDQKKSIDQLVALGFTRILLHG--SSNGEPIIENIKHIKALVEYANNRIEI 181 (224)
T ss_dssp BCHHHHHHHHHHHTTCCEEECGGGGGSCTTTHHHHHHHHHHTTCCEEEECS--CSSCCCGGGGHHHHHHHHHHHTTSSEE
T ss_pred cCHHHHHHHHHHhCCCeEEEECchhccCCcCHHHHHHHHHHcCCCEEECCC--CCCCCcHHHHHHHHHHHHHhhCCCeEE
Confidence 3444555555443 456554332 223 336789999999998754 321111233445566665555568999
Q ss_pred EEecCCCCHHHHHHHH-HcCCCEEEEch
Q 019244 258 FLDGGVRRGTDVFKAL-ALGASGIFIGR 284 (344)
Q Consensus 258 ia~GGIr~g~dv~kal-alGAd~V~ig~ 284 (344)
++-|||+ ...+.+.+ .+|++.+=.+.
T Consensus 182 m~GgGV~-~~Ni~~l~~~tGv~e~H~s~ 208 (224)
T 2bdq_A 182 MVGGGVT-AENYQYICQETGVKQAHGTR 208 (224)
T ss_dssp EECSSCC-TTTHHHHHHHHTCCEEEETT
T ss_pred EeCCCCC-HHHHHHHHHhhCCCEEcccc
Confidence 9999998 46666666 58998887543
|
| >3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A | Back alignment and structure |
|---|
Probab=94.98 E-value=0.11 Score=48.47 Aligned_cols=94 Identities=15% Similarity=0.181 Sum_probs=56.9
Q ss_pred HHHHHcCCcEEEEccCCCCCCCCch-hhHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHcCCCEEEEchHHHH
Q 019244 214 RIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVVY 288 (344)
Q Consensus 214 ~~~~~~G~d~I~v~~~gG~~~~~g~-~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~k----alalGAd~V~ig~~~l~ 288 (344)
+.+++.|+|+|.+.|+-|-...-.. .-.+.+..+.+...+++|||+.-|=.+-.++++ |-.+|||++++-.|+++
T Consensus 36 ~~li~~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~~Pyy~ 115 (309)
T 3fkr_A 36 DFMIDAGSDGLCILANFSEQFAITDDERDVLTRTILEHVAGRVPVIVTTSHYSTQVCAARSLRAQQLGAAMVMAMPPYHG 115 (309)
T ss_dssp HHHHHTTCSCEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEECCSCBT
T ss_pred HHHHHcCCCEEEECccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCCchHHHHHHHHHHHHHcCCCEEEEcCCCCc
Confidence 3467899999999765442111111 123455556666667899998655555555553 33479999999999762
Q ss_pred HhhhcChHHHHHHHHHHHH
Q 019244 289 SLAAEGEKGVRRVLEMLRE 307 (344)
Q Consensus 289 ~~~~~G~~~v~~~l~~l~~ 307 (344)
....-.++++.++++.+.+
T Consensus 116 ~~~~~s~~~l~~~f~~va~ 134 (309)
T 3fkr_A 116 ATFRVPEAQIFEFYARVSD 134 (309)
T ss_dssp TTBCCCHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHH
Confidence 1111245665555555443
|
| >2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A* | Back alignment and structure |
|---|
Probab=94.98 E-value=0.11 Score=49.07 Aligned_cols=91 Identities=19% Similarity=0.312 Sum_probs=57.6
Q ss_pred HHHHHHcCCcEEEEccCCCCCCCCch-hhHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHcCCCEEEEchHHH
Q 019244 213 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 287 (344)
Q Consensus 213 a~~~~~~G~d~I~v~~~gG~~~~~g~-~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~k----alalGAd~V~ig~~~l 287 (344)
++.+++.|+++|.+.|+-|-...-.. .-.+.+..+++.+.+++|||+--|=.+-.++++ |-.+|||++++-.|++
T Consensus 58 v~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg~~st~eai~la~~A~~~Gadavlv~~P~Y 137 (343)
T 2v9d_A 58 IDDLIKAGVDGLFFLGSGGEFSQLGAEERKAIARFAIDHVDRRVPVLIGTGGTNARETIELSQHAQQAGADGIVVINPYY 137 (343)
T ss_dssp HHHHHHTTCSCEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCSSCHHHHHHHHHHHHHHTCSEEEEECCSS
T ss_pred HHHHHHcCCCEEEeCccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCC
Confidence 34577899999999775443111111 123455556666667899998655555555553 3347999999999987
Q ss_pred HHhhhcChHHHHHHHHHHH
Q 019244 288 YSLAAEGEKGVRRVLEMLR 306 (344)
Q Consensus 288 ~~~~~~G~~~v~~~l~~l~ 306 (344)
+.. .++++.++++.+.
T Consensus 138 ~~~---s~~~l~~~f~~VA 153 (343)
T 2v9d_A 138 WKV---SEANLIRYFEQVA 153 (343)
T ss_dssp SCC---CHHHHHHHHHHHH
T ss_pred CCC---CHHHHHHHHHHHH
Confidence 642 3455555555443
|
| >3ldv_A Orotidine 5'-phosphate decarboxylase; structural genomics, infectious diseases; 1.77A {Vibrio cholerae o1 biovar el tor} PDB: 3uwq_A* | Back alignment and structure |
|---|
Probab=94.96 E-value=0.073 Score=48.29 Aligned_cols=79 Identities=22% Similarity=0.344 Sum_probs=52.7
Q ss_pred HHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCH-HH---------HHHHHHcCCCEE
Q 019244 211 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG-TD---------VFKALALGASGI 280 (344)
Q Consensus 211 ~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g-~d---------v~kalalGAd~V 280 (344)
+-++.+.++|+++++++. .-+..+++.++.+. ++.+.|||-. .+ ..+++..|||.+
T Consensus 166 ~~A~~a~~aG~~GvV~sa-------------~e~~~iR~~~g~~f-l~VtPGIr~qg~~~~dQ~Rv~t~~~a~~aGad~i 231 (255)
T 3ldv_A 166 RLATLTKNAGLDGVVCSA-------------QEASLLKQHLGREF-KLVTPGIRPAGSEQGDQRRIMTPAQAIASGSDYL 231 (255)
T ss_dssp HHHHHHHHTTCSEEECCH-------------HHHHHHHHHHCTTS-EEEEECCCCTTSTTSSCSSSCCHHHHHHTTCSEE
T ss_pred HHHHHHHHcCCCEEEECH-------------HHHHHHHHhcCCCc-EEEeCCcccCcCCccceeccCCHHHHHHcCCCEE
Confidence 345667789999998742 23455566665444 7788999853 23 567889999999
Q ss_pred EEchHHHHHhhhcChHHHHHHHHHHHHHH
Q 019244 281 FIGRPVVYSLAAEGEKGVRRVLEMLREEF 309 (344)
Q Consensus 281 ~ig~~~l~~~~~~G~~~v~~~l~~l~~el 309 (344)
.+||+++.+ .. ....++.+++|+
T Consensus 232 VvGr~I~~a---~d---p~~a~~~i~~ei 254 (255)
T 3ldv_A 232 VIGRPITQA---AH---PEVVLEEINSSL 254 (255)
T ss_dssp EECHHHHTC---SC---HHHHHHHHHHHC
T ss_pred EECHHHhCC---CC---HHHHHHHHHHhh
Confidence 999998753 12 233455666554
|
| >3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A | Back alignment and structure |
|---|
Probab=94.95 E-value=0.11 Score=48.40 Aligned_cols=91 Identities=20% Similarity=0.309 Sum_probs=58.3
Q ss_pred HHHHHcCCcEEEEccCCCCCCCCch-hhHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHcCCCEEEEchHHHH
Q 019244 214 RIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVVY 288 (344)
Q Consensus 214 ~~~~~~G~d~I~v~~~gG~~~~~g~-~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~k----alalGAd~V~ig~~~l~ 288 (344)
+.+++.|+|+|.+.|+-|-...-.. .-.+.+..+.+...+++|||+--|=.+-.++++ +-.+|||++++..|+++
T Consensus 51 ~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~~st~eai~la~~A~~~Gadavlv~~P~y~ 130 (314)
T 3qze_A 51 DFHLQEGTNAIVAVGTTGESATLDVEEHIQVIRRVVDQVKGRIPVIAGTGANSTREAVALTEAAKSGGADACLLVTPYYN 130 (314)
T ss_dssp HHHHHHTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSS
T ss_pred HHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHHcCCCEEEEcCCCCC
Confidence 3467899999999765442111111 123455555666667899999656556666654 33589999999999886
Q ss_pred HhhhcChHHHHHHHHHHHH
Q 019244 289 SLAAEGEKGVRRVLEMLRE 307 (344)
Q Consensus 289 ~~~~~G~~~v~~~l~~l~~ 307 (344)
.. .++++.++++.+.+
T Consensus 131 ~~---s~~~l~~~f~~va~ 146 (314)
T 3qze_A 131 KP---TQEGMYQHFRHIAE 146 (314)
T ss_dssp CC---CHHHHHHHHHHHHH
T ss_pred CC---CHHHHHHHHHHHHH
Confidence 42 35566555555443
|
| >2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=94.94 E-value=0.13 Score=47.57 Aligned_cols=92 Identities=20% Similarity=0.273 Sum_probs=58.1
Q ss_pred HHHHHHcCCcEEEEccCCCCCCCCch-hhHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHcCCCEEEEchHHH
Q 019244 213 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 287 (344)
Q Consensus 213 a~~~~~~G~d~I~v~~~gG~~~~~g~-~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~k----alalGAd~V~ig~~~l 287 (344)
++.+++.|+++|.+.|+-|-...-.. .-.+.+..+.+.+.+++|||+--|=.+-.++++ |-.+|||++++-.|++
T Consensus 27 v~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y 106 (294)
T 2ehh_A 27 IEFHVDNGTDAILVCGTTGESPTLTFEEHEKVIEFAVKRAAGRIKVIAGTGGNATHEAVHLTAHAKEVGADGALVVVPYY 106 (294)
T ss_dssp HHHHHTTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCS
T ss_pred HHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCC
Confidence 45577899999999776443111111 123455556666667899998555555555553 3347999999999987
Q ss_pred HHhhhcChHHHHHHHHHHHH
Q 019244 288 YSLAAEGEKGVRRVLEMLRE 307 (344)
Q Consensus 288 ~~~~~~G~~~v~~~l~~l~~ 307 (344)
+.. .++++.++++.+.+
T Consensus 107 ~~~---s~~~l~~~f~~va~ 123 (294)
T 2ehh_A 107 NKP---TQRGLYEHFKTVAQ 123 (294)
T ss_dssp SCC---CHHHHHHHHHHHHH
T ss_pred CCC---CHHHHHHHHHHHHH
Confidence 642 45565555555433
|
| >2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=94.93 E-value=0.12 Score=48.55 Aligned_cols=92 Identities=13% Similarity=0.095 Sum_probs=57.9
Q ss_pred HHHHHHcCCcEEEEccCCCCCCCCch-hhHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHcCCCEEEEchHHH
Q 019244 213 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 287 (344)
Q Consensus 213 a~~~~~~G~d~I~v~~~gG~~~~~g~-~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~k----alalGAd~V~ig~~~l 287 (344)
++.+++.|+|+|.+.|+-|-...-.. .-.+.+..+++.+.+++|||+--|=.+-.++++ |-.+|||++++-.|++
T Consensus 61 v~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg~~st~eai~la~~A~~~Gadavlv~~P~Y 140 (332)
T 2r8w_A 61 IARLDAAEVDSVGILGSTGIYMYLTREERRRAIEAAATILRGRRTLMAGIGALRTDEAVALAKDAEAAGADALLLAPVSY 140 (332)
T ss_dssp HHHHHHHTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEECCSSHHHHHHHHHHHHHHTCSEEEECCCCS
T ss_pred HHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCC
Confidence 34577899999999776443111111 123455556666667899998544444555543 3347999999999987
Q ss_pred HHhhhcChHHHHHHHHHHHH
Q 019244 288 YSLAAEGEKGVRRVLEMLRE 307 (344)
Q Consensus 288 ~~~~~~G~~~v~~~l~~l~~ 307 (344)
+.. .++++.++++.+.+
T Consensus 141 ~~~---s~~~l~~~f~~VA~ 157 (332)
T 2r8w_A 141 TPL---TQEEAYHHFAAVAG 157 (332)
T ss_dssp SCC---CHHHHHHHHHHHHH
T ss_pred CCC---CHHHHHHHHHHHHH
Confidence 642 45666666655543
|
| >2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A | Back alignment and structure |
|---|
Probab=94.89 E-value=2.2 Score=40.23 Aligned_cols=126 Identities=15% Similarity=0.164 Sum_probs=70.2
Q ss_pred cHHHHHHHHHhcCCcEEEEeec-CHHHH----HHHHHcCCcEEEEccCCCCCCCCch--hhHHHHHHHHHHccCCCcEEE
Q 019244 187 SWKDVKWLQTITKLPILVKGVL-TAEDA----RIAVQAGAAGIIVSNHGARQLDYVP--ATIMALEEVVKATQGRIPVFL 259 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v~-~~~~a----~~~~~~G~d~I~v~~~gG~~~~~g~--~~~~~l~~i~~~~~~~~~via 259 (344)
++..|+++.+ +++||++|..+ |.++. ..+.+.|.+.+.+ |+-+....-+ -.+.+++.+++..+ .+||..
T Consensus 137 n~~LL~~va~-~gkPviLstGmat~~Ei~~Ave~i~~~G~~iiLl--hc~s~Yp~~~~~~nL~ai~~lk~~f~-~lpVg~ 212 (349)
T 2wqp_A 137 NYPLIKLVAS-FGKPIILSTGMNSIESIKKSVEIIREAGVPYALL--HCTNIYPTPYEDVRLGGMNDLSEAFP-DAIIGL 212 (349)
T ss_dssp CHHHHHHHHT-TCSCEEEECTTCCHHHHHHHHHHHHHHTCCEEEE--ECCCCSSCCGGGCCTHHHHHHHHHCT-TSEEEE
T ss_pred CHHHHHHHHh-cCCeEEEECCCCCHHHHHHHHHHHHHcCCCEEEE--eccCCCCCChhhcCHHHHHHHHHHCC-CCCEEe
Confidence 5677888876 59999999864 56553 4455678866655 3333222211 13455666655541 488876
Q ss_pred ecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcChHH----HHHHHHHHHHHHHHHHHHhCC
Q 019244 260 DGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKG----VRRVLEMLREEFELAMALSGC 318 (344)
Q Consensus 260 ~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~~----v~~~l~~l~~el~~~m~~~G~ 318 (344)
++==.-..=...|+++||+ +|=+.|--.-+..|.++ --+-++.|.++++..-..+|.
T Consensus 213 sdHt~G~~~~~AAvAlGA~--iIEkH~tld~a~~G~D~~~SL~p~ef~~lv~~ir~~~~alG~ 273 (349)
T 2wqp_A 213 SDHTLDNYACLGAVALGGS--ILERHFTDRMDRPGPDIVCSMNPDTFKELKQGAHALKLARGG 273 (349)
T ss_dssp ECCSSSSHHHHHHHHHTCC--EEEEEBCSCTTCCSTTGGGCBCHHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCcHHHHHHHHHhCCC--EEEeCCCccccCCCCChhhhCCHHHHHHHHHHHHHHHHHhCC
Confidence 5411113334467899999 44443311101112211 012356777788888888885
|
| >1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A* | Back alignment and structure |
|---|
Probab=94.86 E-value=0.22 Score=46.77 Aligned_cols=88 Identities=15% Similarity=0.066 Sum_probs=60.4
Q ss_pred HHHHHHHHhcCCcEEEEeecCH---HHHHHHHHcC--CcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCC
Q 019244 189 KDVKWLQTITKLPILVKGVLTA---EDARIAVQAG--AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 263 (344)
Q Consensus 189 ~~i~~i~~~~~~PvivK~v~~~---~~a~~~~~~G--~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGI 263 (344)
+.++++++. +.|+.+.....+ +.++.+.++| +++|.+....| .....++.+.++++.. +.+++..|.|
T Consensus 85 ~~i~~~~~~-g~~v~v~~g~~~~~~~~a~~~~~~g~~~~~i~i~~~~G----~~~~~~~~i~~lr~~~--~~~~vi~G~v 157 (336)
T 1ypf_A 85 SFIRDMQSR-GLIASISVGVKEDEYEFVQQLAAEHLTPEYITIDIAHG----HSNAVINMIQHIKKHL--PESFVIAGNV 157 (336)
T ss_dssp HHHHHHHHT-TCCCEEEECCSHHHHHHHHHHHHTTCCCSEEEEECSSC----CSHHHHHHHHHHHHHC--TTSEEEEEEE
T ss_pred HHHHHHHhc-CCeEEEeCCCCHHHHHHHHHHHhcCCCCCEEEEECCCC----CcHHHHHHHHHHHHhC--CCCEEEECCc
Confidence 346665543 667777643333 4467788999 99988743212 1234567788888776 2344455779
Q ss_pred CCHHHHHHHHHcCCCEEEEc
Q 019244 264 RRGTDVFKALALGASGIFIG 283 (344)
Q Consensus 264 r~g~dv~kalalGAd~V~ig 283 (344)
.+.+++.++..+|||+|.++
T Consensus 158 ~s~e~A~~a~~aGad~Ivvs 177 (336)
T 1ypf_A 158 GTPEAVRELENAGADATKVG 177 (336)
T ss_dssp CSHHHHHHHHHHTCSEEEEC
T ss_pred CCHHHHHHHHHcCCCEEEEe
Confidence 99999999999999999993
|
| >4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=94.85 E-value=0.087 Score=52.28 Aligned_cols=68 Identities=18% Similarity=0.215 Sum_probs=54.3
Q ss_pred HHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 019244 210 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 283 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig 283 (344)
.+.++.+.++|+|.|.+....|. .....+.+.++++..+ ++||++ |.+.+.+++.++..+|||+|.+|
T Consensus 231 ~~~a~~l~~aG~d~I~id~a~g~----~~~~~~~v~~i~~~~p-~~~Vi~-g~v~t~e~a~~l~~aGaD~I~vg 298 (490)
T 4avf_A 231 GERVAALVAAGVDVVVVDTAHGH----SKGVIERVRWVKQTFP-DVQVIG-GNIATAEAAKALAEAGADAVKVG 298 (490)
T ss_dssp HHHHHHHHHTTCSEEEEECSCCS----BHHHHHHHHHHHHHCT-TSEEEE-EEECSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHhhcccceEEecccCCc----chhHHHHHHHHHHHCC-CceEEE-eeeCcHHHHHHHHHcCCCEEEEC
Confidence 57789999999999999654332 2445677888877663 688887 77999999999999999999985
|
| >2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis} | Back alignment and structure |
|---|
Probab=94.82 E-value=0.12 Score=47.82 Aligned_cols=92 Identities=16% Similarity=0.289 Sum_probs=58.5
Q ss_pred HHHHHHcCCcEEEEccCCCCCCCCch-hhHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHcCCCEEEEchHHH
Q 019244 213 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 287 (344)
Q Consensus 213 a~~~~~~G~d~I~v~~~gG~~~~~g~-~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~k----alalGAd~V~ig~~~l 287 (344)
++.+++.|+++|.+.|+-|-...-.. .-.+.+..+.+.+.+++|||+--|=.+-.++++ |-.+|||++++-.|++
T Consensus 27 v~~li~~Gv~gi~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y 106 (297)
T 2rfg_A 27 VDWQIKHGAHGLVPVGTTGESPTLTEEEHKRVVALVAEQAQGRVPVIAGAGSNNPVEAVRYAQHAQQAGADAVLCVAGYY 106 (297)
T ss_dssp HHHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHHTCSEEEECCCTT
T ss_pred HHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEccCCCCHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 45678899999999765442111111 123455555666667899988555545555543 3347999999999988
Q ss_pred HHhhhcChHHHHHHHHHHHH
Q 019244 288 YSLAAEGEKGVRRVLEMLRE 307 (344)
Q Consensus 288 ~~~~~~G~~~v~~~l~~l~~ 307 (344)
+.. .++++.++++.+.+
T Consensus 107 ~~~---s~~~l~~~f~~va~ 123 (297)
T 2rfg_A 107 NRP---SQEGLYQHFKMVHD 123 (297)
T ss_dssp TCC---CHHHHHHHHHHHHH
T ss_pred CCC---CHHHHHHHHHHHHH
Confidence 642 45666666655544
|
| >2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A | Back alignment and structure |
|---|
Probab=94.82 E-value=0.12 Score=47.55 Aligned_cols=89 Identities=15% Similarity=0.237 Sum_probs=56.7
Q ss_pred HHHHHcCCcEEEEccCCCCCCCCch-hhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHH----HcCCCEEEEchHHHH
Q 019244 214 RIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKAL----ALGASGIFIGRPVVY 288 (344)
Q Consensus 214 ~~~~~~G~d~I~v~~~gG~~~~~g~-~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kal----alGAd~V~ig~~~l~ 288 (344)
+.+++.|+|+|.+.|+-|-...-.. .-.+.+..+.+.+.+++|||+--|=.+-.++++.. .+|||++++-.|+++
T Consensus 29 ~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~ 108 (292)
T 2ojp_A 29 DYHVASGTSAIVSVGTTGESATLNHDEHADVVMMTLDLADGRIPVIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYYN 108 (292)
T ss_dssp HHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHTTTSSCSEEEEECCCSS
T ss_pred HHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCccHHHHHHHHHHHHhcCCCEEEECCCCCC
Confidence 4577889999999776443211111 12345555666666789999855555566665433 379999999999876
Q ss_pred HhhhcChHHHHHHHHHH
Q 019244 289 SLAAEGEKGVRRVLEML 305 (344)
Q Consensus 289 ~~~~~G~~~v~~~l~~l 305 (344)
.. .++++.++++.+
T Consensus 109 ~~---s~~~l~~~f~~i 122 (292)
T 2ojp_A 109 RP---SQEGLYQHFKAI 122 (292)
T ss_dssp CC---CHHHHHHHHHHH
T ss_pred CC---CHHHHHHHHHHH
Confidence 42 345555555444
|
| >3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=94.81 E-value=0.081 Score=48.42 Aligned_cols=40 Identities=28% Similarity=0.288 Sum_probs=34.9
Q ss_pred HHHHHHHHHhcCCcEEEEee-cCHHHHHHHHHcCCcEEEEc
Q 019244 188 WKDVKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVS 227 (344)
Q Consensus 188 ~~~i~~i~~~~~~PvivK~v-~~~~~a~~~~~~G~d~I~v~ 227 (344)
.+.++++|+.+++|+++..- .++++++.+...|+|+++|.
T Consensus 197 ~~~v~~vr~~~~~Pv~vGfGIst~e~~~~~~~~gADgvIVG 237 (271)
T 3nav_A 197 HALLERLQQFDAPPALLGFGISEPAQVKQAIEAGAAGAISG 237 (271)
T ss_dssp HHHHHHHHHTTCCCEEECSSCCSHHHHHHHHHTTCSEEEES
T ss_pred HHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 35689999988999999764 68999999999999999995
|
| >1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A | Back alignment and structure |
|---|
Probab=94.77 E-value=0.11 Score=48.15 Aligned_cols=90 Identities=19% Similarity=0.345 Sum_probs=56.7
Q ss_pred HHHHHHcCCcEEEEccCCCCCCCCch-hhHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHcCCCEEEEchHHH
Q 019244 213 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 287 (344)
Q Consensus 213 a~~~~~~G~d~I~v~~~gG~~~~~g~-~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~k----alalGAd~V~ig~~~l 287 (344)
++.+++.|+++|.+.|+-|-...-.. .-.+.+..+.+.+.+++|||+--|=.+-.++++ |-.+|||++++-.|++
T Consensus 39 v~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~~grvpViaGvg~~st~~ai~la~~A~~~Gadavlv~~P~y 118 (306)
T 1o5k_A 39 VRYQLENGVNALIVLGTTGESPTVNEDEREKLVSRTLEIVDGKIPVIVGAGTNSTEKTLKLVKQAEKLGANGVLVVTPYY 118 (306)
T ss_dssp HHHHHHTTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCS
T ss_pred HHHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEcCCCccHHHHHHHHHHHHhcCCCEEEECCCCC
Confidence 34577899999999775443111111 123455556666667899998555555555553 3347999999999987
Q ss_pred HHhhhcChHHHHHHHHHH
Q 019244 288 YSLAAEGEKGVRRVLEML 305 (344)
Q Consensus 288 ~~~~~~G~~~v~~~l~~l 305 (344)
+.. .++++.++++.+
T Consensus 119 ~~~---s~~~l~~~f~~v 133 (306)
T 1o5k_A 119 NKP---TQEGLYQHYKYI 133 (306)
T ss_dssp SCC---CHHHHHHHHHHH
T ss_pred CCC---CHHHHHHHHHHH
Confidence 642 345555555444
|
| >3tr2_A Orotidine 5'-phosphate decarboxylase; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.00A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=94.75 E-value=0.067 Score=48.07 Aligned_cols=80 Identities=25% Similarity=0.390 Sum_probs=49.8
Q ss_pred HHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHH----------HHHHHHcCCCEE
Q 019244 211 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD----------VFKALALGASGI 280 (344)
Q Consensus 211 ~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~d----------v~kalalGAd~V 280 (344)
+.|+.+.++|++++++|.+ -...+++..+.+. ++.+.|||-..+ ..+++..|||.+
T Consensus 148 ~~A~~a~~~g~~GvV~s~~-------------e~~~ir~~~~~~f-l~vtPGIr~~g~~~~dQ~rv~t~~~~~~aGad~l 213 (239)
T 3tr2_A 148 RMATLAKSAGLDGVVCSAQ-------------EAALLRKQFDRNF-LLVTPGIRLETDEKGDQKRVMTPRAAIQAGSDYL 213 (239)
T ss_dssp HHHHHHHHHTCCEEECCHH-------------HHHHHHTTCCTTS-EEEECCBC----------CCBCHHHHHHHTCSEE
T ss_pred HHHHHHHHcCCCEEEECch-------------hHHHHHHhcCCCc-EEECCCcCCCCCCcCcccccCCHHHHHHcCCCEE
Confidence 3466777889999987521 1233454454334 788999985432 557889999999
Q ss_pred EEchHHHHHhhhcChHHHHHHHHHHHHHHH
Q 019244 281 FIGRPVVYSLAAEGEKGVRRVLEMLREEFE 310 (344)
Q Consensus 281 ~ig~~~l~~~~~~G~~~v~~~l~~l~~el~ 310 (344)
.+||+++.+ .. ....++.+++|+.
T Consensus 214 VvGr~I~~a---~d---p~~a~~~i~~~i~ 237 (239)
T 3tr2_A 214 VIGRPITQS---TD---PLKALEAIDKDIK 237 (239)
T ss_dssp EECHHHHTS---SS---HHHHHHHHHHHC-
T ss_pred EEChHHhCC---CC---HHHHHHHHHHHHh
Confidence 999998753 12 2234555655543
|
| >3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A* | Back alignment and structure |
|---|
Probab=94.72 E-value=0.16 Score=47.04 Aligned_cols=92 Identities=14% Similarity=0.250 Sum_probs=59.1
Q ss_pred HHHHHHcCCcEEEEccCCCCCCCCch-hhHHHHHHHHHHccC-CCcEEEecCCCCHHHHHH----HHHcCCCEEEEchHH
Q 019244 213 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQG-RIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPV 286 (344)
Q Consensus 213 a~~~~~~G~d~I~v~~~gG~~~~~g~-~~~~~l~~i~~~~~~-~~~via~GGIr~g~dv~k----alalGAd~V~ig~~~ 286 (344)
++.+++.|+++|.+.|+-|-...-.. .-.+.+..+.+.+.+ ++|||+.-|=.+-.++++ +-.+|||++++-.|+
T Consensus 34 v~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~g~rvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~ 113 (301)
T 3m5v_A 34 IKRQIENGIDAVVPVGTTGESATLTHEEHRTCIEIAVETCKGTKVKVLAGAGSNATHEAVGLAKFAKEHGADGILSVAPY 113 (301)
T ss_dssp HHHHHHTTCCEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCC
T ss_pred HHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 34577899999999776443111111 123456666666777 899999656556666654 334899999999998
Q ss_pred HHHhhhcChHHHHHHHHHHHH
Q 019244 287 VYSLAAEGEKGVRRVLEMLRE 307 (344)
Q Consensus 287 l~~~~~~G~~~v~~~l~~l~~ 307 (344)
++.. .++++.++++.+.+
T Consensus 114 y~~~---s~~~l~~~f~~va~ 131 (301)
T 3m5v_A 114 YNKP---TQQGLYEHYKAIAQ 131 (301)
T ss_dssp SSCC---CHHHHHHHHHHHHH
T ss_pred CCCC---CHHHHHHHHHHHHH
Confidence 7642 34555555554433
|
| >2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.66 E-value=0.11 Score=47.98 Aligned_cols=92 Identities=17% Similarity=0.342 Sum_probs=57.4
Q ss_pred HHHHHHcCCcEEEEccCCCCCCCCch-hhHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHcCCCEEEEchHHH
Q 019244 213 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 287 (344)
Q Consensus 213 a~~~~~~G~d~I~v~~~gG~~~~~g~-~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~k----alalGAd~V~ig~~~l 287 (344)
++.+++.|+|+|.+.|+-|-...-.. .-.+.+..+.+.+.+++|||+--|=.+-.++++ |-.+|||++++-.|++
T Consensus 27 v~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y 106 (292)
T 2vc6_A 27 VEWQIEEGSFGLVPCGTTGESPTLSKSEHEQVVEITIKTANGRVPVIAGAGSNSTAEAIAFVRHAQNAGADGVLIVSPYY 106 (292)
T ss_dssp HHHHHHTTCSEEETTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCS
T ss_pred HHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCccHHHHHHHHHHHHHcCCCEEEEcCCCC
Confidence 45678899999998765442111111 123455555666667899987555444555543 3447999999999987
Q ss_pred HHhhhcChHHHHHHHHHHHH
Q 019244 288 YSLAAEGEKGVRRVLEMLRE 307 (344)
Q Consensus 288 ~~~~~~G~~~v~~~l~~l~~ 307 (344)
+.. .++++.++++.+.+
T Consensus 107 ~~~---s~~~l~~~f~~ia~ 123 (292)
T 2vc6_A 107 NKP---TQEGIYQHFKAIDA 123 (292)
T ss_dssp SCC---CHHHHHHHHHHHHH
T ss_pred CCC---CHHHHHHHHHHHHH
Confidence 642 45565555555443
|
| >3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=94.65 E-value=0.17 Score=47.37 Aligned_cols=92 Identities=14% Similarity=0.242 Sum_probs=55.3
Q ss_pred HHHHHcCCcEEEEccCCCCCCCCch-hhHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHcCCCEEEEchHHHH
Q 019244 214 RIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVVY 288 (344)
Q Consensus 214 ~~~~~~G~d~I~v~~~gG~~~~~g~-~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~k----alalGAd~V~ig~~~l~ 288 (344)
+.+++.|+|+|.+.|+-|-...-.. .-.+.+..+.+.+.+++|||+--|=.+-.++++ +-.+|||++++-.|++|
T Consensus 39 ~~li~~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~ 118 (318)
T 3qfe_A 39 AYLARSGLTGLVILGTNAEAFLLTREERAQLIATARKAVGPDFPIMAGVGAHSTRQVLEHINDASVAGANYVLVLPPAYF 118 (318)
T ss_dssp HHHHTTTCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHCTTSCEEEECCCSSHHHHHHHHHHHHHHTCSEEEECCCCC-
T ss_pred HHHHHcCCCEEEeCccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 3467889999999775442111111 123455556666677999998555555666553 33479999999999776
Q ss_pred HhhhcChHHHHHHHHHHH
Q 019244 289 SLAAEGEKGVRRVLEMLR 306 (344)
Q Consensus 289 ~~~~~G~~~v~~~l~~l~ 306 (344)
.- -..++++.++++.+.
T Consensus 119 ~k-p~~~~~l~~~f~~ia 135 (318)
T 3qfe_A 119 GK-ATTPPVIKSFFDDVS 135 (318)
T ss_dssp ---CCCHHHHHHHHHHHH
T ss_pred CC-CCCHHHHHHHHHHHH
Confidence 30 012455555555443
|
| >4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B* | Back alignment and structure |
|---|
Probab=94.64 E-value=0.1 Score=51.98 Aligned_cols=231 Identities=16% Similarity=0.193 Sum_probs=112.2
Q ss_pred hcccccceeecccC-CCCCCCcceeec-ccccccceeecccccccccCChhhHHHHHHHHHcCCcc-ccC--CHHHHHHH
Q 019244 41 NAFSRILFRPRILI-DVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM-VYK--DRNVVAQL 115 (344)
Q Consensus 41 ~~f~~i~l~pr~l~-~~~~vd~st~l~-g~~l~~Pi~iapm~~~~~~~~~~~~~lA~aA~~~g~~~-~~~--d~~~~~~~ 115 (344)
-.||++.|+|..-. ..++|||+|.|- +.+|+.||+.|||.- -.|..||.+.++.|... +++ +.+...+.
T Consensus 60 LTfDDVlLvP~~s~v~p~~Vdl~t~lt~~i~L~iPlvSA~MDT------VTe~~MAIamAr~GGiGvIH~n~sie~Qa~~ 133 (556)
T 4af0_A 60 LTYNDFLVLPGHINFPASDVSLQSKATKNIVLNTPFLSSPMDT------VTEDRMAIALALHGGLGIIHHNCSAEEQAAM 133 (556)
T ss_dssp CCGGGEEECCCCCCSCGGGCCCCEEEETTEEESSCEEECCCTT------TCSHHHHHHHHHTTCEEEECCSSCHHHHHHH
T ss_pred CChhhEEEccCCCCCCcccceeeeeccCCcEeCCCEEecCccc------ccCHHHHHHHHHCCCeEEEcCCCCHHHHHHH
Confidence 36999999997542 335899999985 689999999999952 24567999888888766 444 45555677
Q ss_pred HHHHHHcC--Cc--EEEeccCCccccccHHHHHhhc-CCCCccc----ccccccccccccc-cccchhhHHHHhhcC---
Q 019244 116 VRRAERAG--FK--AIALTVDTPRLGRREADIKNRF-TLPPFLT----LKNFQGLDLGKMD-EANDSGLAAYVAGQI--- 182 (344)
Q Consensus 116 i~~a~~ag--~~--~l~~tvd~~~~g~r~~~~~~~~-~~~~g~~----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--- 182 (344)
+++++++. +- .+.++++..+....+-..+.++ ++|.-.. -+.++-+....+. ......+.+++.++.
T Consensus 134 V~~VKr~e~g~i~dPvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~~~~kLvGIvT~RD~rf~d~~~~V~evMT~~lvt~ 213 (556)
T 4af0_A 134 VRRVKKYENGFITDPLCLGPDATVGDVLEIKAKFGFCGVPITETGEPDSKLLGIVTGRDVQFQDAETPIKSVMTTEVVTG 213 (556)
T ss_dssp HHHHHHCCC-----------------------------------------------------------------------
T ss_pred HHHHHhcccCccCCCeEcCCCCCHHHHHHHHHHhCCCccccccccCcCCEEEEEEecccccccccceEhhhhcccceEEe
Confidence 88888753 22 2344444333211111011111 1111000 0000000000000 000001111111000
Q ss_pred CCCC------------------------------cHHHHHHHHHhc---------CCcEEEEeecC---HHHHHHHHHcC
Q 019244 183 DRSL------------------------------SWKDVKWLQTIT---------KLPILVKGVLT---AEDARIAVQAG 220 (344)
Q Consensus 183 ~~~~------------------------------~~~~i~~i~~~~---------~~PvivK~v~~---~~~a~~~~~~G 220 (344)
.... +.+++.+.++.- .+.|..-...+ .+-+..+.++|
T Consensus 214 ~~~~~leeA~~iL~~~kieklpVVd~~g~LvGlIT~kDi~k~~~~p~A~k~d~~grL~VgAAVgv~~d~~eR~~aLv~AG 293 (556)
T 4af0_A 214 SSPITLEKANSLLRETKKGKLPIVDSNGHLVSLVARSDLLKNQNYPYASKVPESKQLYCGAAIGTRPGDKDRLKLLAEAG 293 (556)
T ss_dssp --------------------------------------------CTTCCBCTTTCCBCCEEEECSSHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHccccceeEEccCCcEEEEEEechhhhhhhCCcchhcchhhceeeEEEeccCccHHHHHHHHHhcC
Confidence 0000 111222111100 01111111122 34578899999
Q ss_pred CcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 019244 221 AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 283 (344)
Q Consensus 221 ~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig 283 (344)
+|.|+++..-|+ ....++.+..+++.. .+++||+ |.|-|.+-+...+..|||+|-+|
T Consensus 294 vD~iviD~ahGh----s~~v~~~i~~ik~~~-p~~~via-GNVaT~e~a~~Li~aGAD~vkVG 350 (556)
T 4af0_A 294 LDVVVLDSSQGN----SVYQIEFIKWIKQTY-PKIDVIA-GNVVTREQAAQLIAAGADGLRIG 350 (556)
T ss_dssp CCEEEECCSCCC----SHHHHHHHHHHHHHC-TTSEEEE-EEECSHHHHHHHHHHTCSEEEEC
T ss_pred CcEEEEeccccc----cHHHHHHHHHHHhhC-CcceEEe-ccccCHHHHHHHHHcCCCEEeec
Confidence 999999874342 234567777777765 3788776 88999999888889999999776
|
| >4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=94.63 E-value=0.11 Score=51.72 Aligned_cols=69 Identities=16% Similarity=0.283 Sum_probs=55.4
Q ss_pred CHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 019244 209 TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 283 (344)
Q Consensus 209 ~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig 283 (344)
+.+.++.+.++|+|.|.+....|+ .....+.+.++++..+ ++||++ |.+.+.+++.++..+|||+|.+|
T Consensus 232 ~~~~a~~l~~aG~d~I~id~a~g~----~~~~~~~i~~ir~~~p-~~~Vi~-g~v~t~e~a~~l~~aGaD~I~Vg 300 (496)
T 4fxs_A 232 NEERVKALVEAGVDVLLIDSSHGH----SEGVLQRIRETRAAYP-HLEIIG-GNVATAEGARALIEAGVSAVKVG 300 (496)
T ss_dssp CHHHHHHHHHTTCSEEEEECSCTT----SHHHHHHHHHHHHHCT-TCCEEE-EEECSHHHHHHHHHHTCSEEEEC
T ss_pred hHHHHHHHHhccCceEEecccccc----chHHHHHHHHHHHHCC-CceEEE-cccCcHHHHHHHHHhCCCEEEEC
Confidence 468899999999999999754331 2345677888887763 688888 77999999999999999999986
|
| >3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=94.62 E-value=0.033 Score=48.39 Aligned_cols=43 Identities=21% Similarity=0.369 Sum_probs=38.5
Q ss_pred cHHHHHHHHHhcCCcEEEEe-ecCHHHHHHHHHcCCcEEEEccC
Q 019244 187 SWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSNH 229 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~-v~~~~~a~~~~~~G~d~I~v~~~ 229 (344)
.-+.|+++++.+++|+|+.| +.+.|+++.+.++||++|..|+.
T Consensus 138 ~p~iI~~i~~~~~~PiIaGGlI~~~edv~~al~aGA~aVsTs~~ 181 (192)
T 3kts_A 138 IPEQVQKMTQKLHIPVIAGGLIETSEQVNQVIASGAIAVTTSNK 181 (192)
T ss_dssp CHHHHHHHHHHHCCCEEEESSCCSHHHHHHHHTTTEEEEEECCG
T ss_pred hHHHHHHHHHhcCCCEEEECCcCCHHHHHHHHHcCCeEEEeCCH
Confidence 34689999999999999988 47899999999999999999873
|
| >3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=94.57 E-value=0.084 Score=48.22 Aligned_cols=40 Identities=30% Similarity=0.278 Sum_probs=35.3
Q ss_pred HHHHHHHHHhcCCcEEEEee-cCHHHHHHHHHcCCcEEEEc
Q 019244 188 WKDVKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVS 227 (344)
Q Consensus 188 ~~~i~~i~~~~~~PvivK~v-~~~~~a~~~~~~G~d~I~v~ 227 (344)
.+.++++|+.+++|+++... .++++++.+..+|+|+++|.
T Consensus 195 ~~~v~~vr~~~~~pv~vGfGI~~~e~~~~~~~~gADgvVVG 235 (267)
T 3vnd_A 195 ENILTQLAEFNAPPPLLGFGIAEPEQVRAAIKAGAAGAISG 235 (267)
T ss_dssp HHHHHHHHTTTCCCEEECSSCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHhcCCCEEEECCcCCHHHHHHHHHcCCCEEEEC
Confidence 46799999988999999875 57999999999999999995
|
| >3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831} | Back alignment and structure |
|---|
Probab=94.57 E-value=0.099 Score=48.80 Aligned_cols=90 Identities=18% Similarity=0.209 Sum_probs=57.4
Q ss_pred HHHHHcCCcEEEEccCCCCCCCCch-hhHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHcCCCEEEEchHHHH
Q 019244 214 RIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVVY 288 (344)
Q Consensus 214 ~~~~~~G~d~I~v~~~gG~~~~~g~-~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~k----alalGAd~V~ig~~~l~ 288 (344)
+.+++.|+|+|.+.|+-|-...-.. .-.+.+..+++.+.+++|||+--|= +-.++++ |-.+|||++++-.|+++
T Consensus 40 ~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~~grvpViaGvg~-st~~ai~la~~A~~~Gadavlv~~P~y~ 118 (314)
T 3d0c_A 40 EFLLQNGIEVIVPNGNTGEFYALTIEEAKQVATRVTELVNGRATVVAGIGY-SVDTAIELGKSAIDSGADCVMIHQPVHP 118 (314)
T ss_dssp HHHHHTTCSEECTTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEECS-SHHHHHHHHHHHHHTTCSEEEECCCCCS
T ss_pred HHHHHcCCCEEEECcccCChhhCCHHHHHHHHHHHHHHhCCCCeEEecCCc-CHHHHHHHHHHHHHcCCCEEEECCCCCC
Confidence 3477899999998765442111111 1234555566666678999974443 5566553 33479999999999886
Q ss_pred HhhhcChHHHHHHHHHHHH
Q 019244 289 SLAAEGEKGVRRVLEMLRE 307 (344)
Q Consensus 289 ~~~~~G~~~v~~~l~~l~~ 307 (344)
.. .++++.++++.+.+
T Consensus 119 ~~---s~~~l~~~f~~va~ 134 (314)
T 3d0c_A 119 YI---TDAGAVEYYRNIIE 134 (314)
T ss_dssp CC---CHHHHHHHHHHHHH
T ss_pred CC---CHHHHHHHHHHHHH
Confidence 42 45666666666544
|
| >3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A | Back alignment and structure |
|---|
Probab=94.55 E-value=0.17 Score=47.07 Aligned_cols=92 Identities=10% Similarity=0.084 Sum_probs=57.9
Q ss_pred HHHHcCCcEEEEccCCCCCCCCch-hhHHHHHHHHHHccCCCcEEEecCCCCHHHHH----HHHHcCCCEEEEchHHHHH
Q 019244 215 IAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVF----KALALGASGIFIGRPVVYS 289 (344)
Q Consensus 215 ~~~~~G~d~I~v~~~gG~~~~~g~-~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~----kalalGAd~V~ig~~~l~~ 289 (344)
.+++.|+|+|.+.|+-|-...-.. .-.+.+..+.+.+.+++|||+--|=.+-.+++ .+-.+|||++++-.|+++.
T Consensus 43 ~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~ 122 (307)
T 3s5o_A 43 KLGTFPFRGFVVQGSNGEFPFLTSSERLEVVSRVRQAMPKNRLLLAGSGCESTQATVEMTVSMAQVGADAAMVVTPCYYR 122 (307)
T ss_dssp HHTTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHTSCTTSEEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCTTG
T ss_pred HHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHcCCCCcEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCCcCC
Confidence 456789999999775442111111 12345556666666789999855555566555 3345899999999998863
Q ss_pred hhhcChHHHHHHHHHHHH
Q 019244 290 LAAEGEKGVRRVLEMLRE 307 (344)
Q Consensus 290 ~~~~G~~~v~~~l~~l~~ 307 (344)
. .-.++++.++++.+.+
T Consensus 123 ~-~~s~~~l~~~f~~ia~ 139 (307)
T 3s5o_A 123 G-RMSSAALIHHYTKVAD 139 (307)
T ss_dssp G-GCCHHHHHHHHHHHHH
T ss_pred C-CCCHHHHHHHHHHHHh
Confidence 1 1145666666655543
|
| >3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=94.51 E-value=0.087 Score=50.92 Aligned_cols=67 Identities=27% Similarity=0.383 Sum_probs=51.0
Q ss_pred HHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 019244 210 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 283 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig 283 (344)
.+.++.+.++|+|.|++..+.|. .....+.+.++++.. .+||++ |++.+.+++.++..+|||+|.+|
T Consensus 146 ~e~~~~lveaGvdvIvldta~G~----~~~~~e~I~~ik~~~--~i~Vi~-g~V~t~e~A~~a~~aGAD~I~vG 212 (400)
T 3ffs_A 146 IERAKLLVEAGVDVIVLDSAHGH----SLNIIRTLKEIKSKM--NIDVIV-GNVVTEEATKELIENGADGIKVG 212 (400)
T ss_dssp CHHHHHHHHHTCSEEEECCSCCS----BHHHHHHHHHHHTTC--CCEEEE-EEECSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHcCCCEEEEeCCCCC----cccHHHHHHHHHhcC--CCeEEE-eecCCHHHHHHHHHcCCCEEEEe
Confidence 57899999999999998543331 112345666665544 678887 78999999999999999999995
|
| >3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=94.49 E-value=0.091 Score=49.08 Aligned_cols=91 Identities=19% Similarity=0.174 Sum_probs=59.9
Q ss_pred HHHHHcCCcEEEEccCCCCCCCCch-hhHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHcCCCEEEEchHHHH
Q 019244 214 RIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVVY 288 (344)
Q Consensus 214 ~~~~~~G~d~I~v~~~gG~~~~~g~-~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~k----alalGAd~V~ig~~~l~ 288 (344)
+.+++.|+|+|.+.|+-|-...-.. .-.+.+..+.+.+.+++|||+.-|- +-.++++ +-.+|||++++..|+++
T Consensus 40 ~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~~v~~~~grvpViaGvg~-~t~~ai~la~~A~~~Gadavlv~~P~y~ 118 (316)
T 3e96_A 40 DRIVDNGIDVIVPCGNTSEFYALSLEEAKEEVRRTVEYVHGRALVVAGIGY-ATSTAIELGNAAKAAGADAVMIHMPIHP 118 (316)
T ss_dssp HHHHTTTCCEECTTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEECS-SHHHHHHHHHHHHHHTCSEEEECCCCCS
T ss_pred HHHHHcCCCEEEeCccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEEeCc-CHHHHHHHHHHHHhcCCCEEEEcCCCCC
Confidence 3467899999998765442111111 1234555666666678999997664 7777664 34579999999999875
Q ss_pred HhhhcChHHHHHHHHHHHHH
Q 019244 289 SLAAEGEKGVRRVLEMLREE 308 (344)
Q Consensus 289 ~~~~~G~~~v~~~l~~l~~e 308 (344)
. -.++++.++++.+.+.
T Consensus 119 ~---~s~~~l~~~f~~va~a 135 (316)
T 3e96_A 119 Y---VTAGGVYAYFRDIIEA 135 (316)
T ss_dssp C---CCHHHHHHHHHHHHHH
T ss_pred C---CCHHHHHHHHHHHHHh
Confidence 3 2466777776666554
|
| >3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=94.41 E-value=0.19 Score=46.81 Aligned_cols=90 Identities=14% Similarity=0.246 Sum_probs=57.9
Q ss_pred HHHHHHcCCcEEEEccCCCCCCCCch-hhHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHcCC-CEEEEchHH
Q 019244 213 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGA-SGIFIGRPV 286 (344)
Q Consensus 213 a~~~~~~G~d~I~v~~~gG~~~~~g~-~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~k----alalGA-d~V~ig~~~ 286 (344)
++.+++.|+++|.+.|+-|-...-.. .-.+.+..+.+...+++|||+.-|=.+-.++++ +-.+|| |++++..|+
T Consensus 34 v~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~~~Ga~davlv~~P~ 113 (311)
T 3h5d_A 34 IEHLLAHHTDGILLAGTTAESPTLTHDEELELFAAVQKVVNGRVPLIAGVGTNDTRDSIEFVKEVAEFGGFAAGLAIVPY 113 (311)
T ss_dssp HHHHHHTTCCCEEESSTTTTGGGSCHHHHHHHHHHHHHHSCSSSCEEEECCCSSHHHHHHHHHHHHHSCCCSEEEEECCC
T ss_pred HHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHhcCCCcEEEEcCCC
Confidence 34577899999999876543111111 123456666666677899999666556666664 334697 999999998
Q ss_pred HHHhhhcChHHHHHHHHHH
Q 019244 287 VYSLAAEGEKGVRRVLEML 305 (344)
Q Consensus 287 l~~~~~~G~~~v~~~l~~l 305 (344)
++.. .++++.++++.+
T Consensus 114 y~~~---s~~~l~~~f~~v 129 (311)
T 3h5d_A 114 YNKP---SQEGMYQHFKAI 129 (311)
T ss_dssp SSCC---CHHHHHHHHHHH
T ss_pred CCCC---CHHHHHHHHHHH
Confidence 7642 345555555444
|
| >3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=94.23 E-value=0.26 Score=45.91 Aligned_cols=91 Identities=12% Similarity=0.186 Sum_probs=59.0
Q ss_pred HHHHHcCCcEEEEccCCCCCCCCch-hhHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHcCCCEEEEchHHHH
Q 019244 214 RIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVVY 288 (344)
Q Consensus 214 ~~~~~~G~d~I~v~~~gG~~~~~g~-~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~k----alalGAd~V~ig~~~l~ 288 (344)
+.+++.|+|+|.+.|+-|-...-.. .-.+.+..+.+.+ +++|||+--|=.+-.++++ |-.+|||++++-.|+++
T Consensus 36 ~~li~~Gv~Gl~v~GtTGE~~~Lt~~Er~~v~~~~v~~~-grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~~~ 114 (313)
T 3dz1_A 36 DFYAEVGCEGVTVLGILGEAPKLDAAEAEAVATRFIKRA-KSMQVIVGVSAPGFAAMRRLARLSMDAGAAGVMIAPPPSL 114 (313)
T ss_dssp HHHHHTTCSEEEESTGGGTGGGSCHHHHHHHHHHHHHHC-TTSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEECCCTTC
T ss_pred HHHHHCCCCEEEeCccCcChhhCCHHHHHHHHHHHHHHc-CCCcEEEecCCCCHHHHHHHHHHHHHcCCCEEEECCCCCC
Confidence 4577899999999775442111111 1234566666777 7999999555556666553 33479999999999843
Q ss_pred HhhhcChHHHHHHHHHHHHHH
Q 019244 289 SLAAEGEKGVRRVLEMLREEF 309 (344)
Q Consensus 289 ~~~~~G~~~v~~~l~~l~~el 309 (344)
..++++.++++.+.+..
T Consensus 115 ----~s~~~l~~~f~~va~a~ 131 (313)
T 3dz1_A 115 ----RTDEQITTYFRQATEAI 131 (313)
T ss_dssp ----CSHHHHHHHHHHHHHHH
T ss_pred ----CCHHHHHHHHHHHHHhC
Confidence 24677766666665543
|
| >2yyu_A Orotidine 5'-phosphate decarboxylase; TIM barrel, structural genomics, NPPSFA, national project on structural and functional analyses; HET: C5P; 2.20A {Geobacillus kaustophilus} PDB: 2yyt_A* | Back alignment and structure |
|---|
Probab=94.23 E-value=0.067 Score=48.10 Aligned_cols=75 Identities=24% Similarity=0.282 Sum_probs=48.9
Q ss_pred HHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCH-H---------HHHHHHHcCCCEEEEchH
Q 019244 216 AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG-T---------DVFKALALGASGIFIGRP 285 (344)
Q Consensus 216 ~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g-~---------dv~kalalGAd~V~ig~~ 285 (344)
..+.|.++++.+ ..+ +.++++..+ ..+++.+|||+.. . .+.+++..|||.+.+||+
T Consensus 152 ~~~~G~~g~V~~------------~~e-i~~lr~~~~-~~~i~V~gGI~~~g~~~~dq~rv~t~~~a~~aGad~iVvGr~ 217 (246)
T 2yyu_A 152 AKESGLDGVVCS------------ANE-AAFIKERCG-ASFLAVTPGIRFADDAAHDQVRVVTPRKARALGSDYIVIGRS 217 (246)
T ss_dssp HHHHTCCEEECC------------HHH-HHHHHHHHC-TTSEEEECCCCCCC-------CCCCHHHHHHHTCSEEEECHH
T ss_pred HHHhCCCEEEeC------------HHH-HHHHHHhcC-CCCEEEeCCcCCCCCCcccccccCCHHHHHHcCCCEEEECHh
Confidence 456888887552 223 556666554 3459999999843 2 377788899999999999
Q ss_pred HHHHhhhcChHHHHHHHHHHHHHHH
Q 019244 286 VVYSLAAEGEKGVRRVLEMLREEFE 310 (344)
Q Consensus 286 ~l~~~~~~G~~~v~~~l~~l~~el~ 310 (344)
++.+ .. ....++.+++++.
T Consensus 218 I~~a---~d---p~~a~~~l~~~i~ 236 (246)
T 2yyu_A 218 LTRA---AD---PLRTYARLQHEWN 236 (246)
T ss_dssp HHTS---SS---HHHHHHHHHHHCC
T ss_pred hcCC---CC---HHHHHHHHHHHHH
Confidence 8753 11 2344555555443
|
| >1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A* | Back alignment and structure |
|---|
Probab=93.97 E-value=0.72 Score=43.65 Aligned_cols=129 Identities=22% Similarity=0.305 Sum_probs=75.4
Q ss_pred cHHHHHHHHHhcCCcEEEEeec--CHHHH----HHHHHcCCcEEEEccCCCCCCCC---chhhHHHHHHHHHHccCCCcE
Q 019244 187 SWKDVKWLQTITKLPILVKGVL--TAEDA----RIAVQAGAAGIIVSNHGARQLDY---VPATIMALEEVVKATQGRIPV 257 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v~--~~~~a----~~~~~~G~d~I~v~~~gG~~~~~---g~~~~~~l~~i~~~~~~~~~v 257 (344)
++..++++.+ +++||++|..+ +.++. ..+...|..-+++.-+|.+.... -...+.+++.+++.. .+||
T Consensus 202 n~~LL~~va~-~~kPVilk~G~~~tl~ei~~Ave~i~~~GN~~viLceRG~~typ~~~~~~vdl~ai~~lk~~~--~lpV 278 (350)
T 1vr6_A 202 NFRLLSKAGS-YNKPVLLKRGFMNTIEEFLLSAEYIANSGNTKIILCERGIRTFEKATRNTLDISAVPIIRKES--HLPI 278 (350)
T ss_dssp CHHHHHHHHT-TCSCEEEECCTTCCHHHHHHHHHHHHHTTCCCEEEEECCBCCSCCSSSSBCCTTHHHHHHHHB--SSCE
T ss_pred CHHHHHHHHc-cCCcEEEcCCCCCCHHHHHHHHHHHHHCCCCeEEEEeCCCCCCCCcChhhhhHHHHHHHHHhh--CCCE
Confidence 4556777774 69999999874 56663 34556788677775566543311 112334556665554 5899
Q ss_pred EEec----CCCC--HHHHHHHHHcCCCEEEEchHHHHHhh-hcChHH-HHHHHHHHHHHHHHHHHHhCC
Q 019244 258 FLDG----GVRR--GTDVFKALALGASGIFIGRPVVYSLA-AEGEKG-VRRVLEMLREEFELAMALSGC 318 (344)
Q Consensus 258 ia~G----GIr~--g~dv~kalalGAd~V~ig~~~l~~~~-~~G~~~-v~~~l~~l~~el~~~m~~~G~ 318 (344)
+++. |-+. ..=...++++||++++|-+.+--.-+ ++|... --+-++.|.++++..-..+|.
T Consensus 279 i~dssHs~G~~~~v~~~a~AAvA~GA~Gl~IE~H~~pd~al~D~~~sL~p~e~~~lv~~ir~i~~alg~ 347 (350)
T 1vr6_A 279 LVDPSHSGGRRDLVIPLSRAAIAVGAHGIIVEVHPEPEKALSDGKQSLDFELFKELVQEMKKLADALGV 347 (350)
T ss_dssp EECHHHHHCSGGGHHHHHHHHHHHTCSEEEEEBCSCGGGCSSCGGGCBCHHHHHHHHHHHHHHHHHHTC
T ss_pred EEeCCCCCcccchHHHHHHHHHHhCCCEEEEEecCCcccCCCchhhcCCHHHHHHHHHHHHHHHHHhCc
Confidence 8843 4432 23345678899999999986532110 123211 012345666666666666663
|
| >1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6 | Back alignment and structure |
|---|
Probab=93.84 E-value=1.2 Score=42.71 Aligned_cols=83 Identities=12% Similarity=0.041 Sum_probs=61.3
Q ss_pred HHHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHH
Q 019244 188 WKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 267 (344)
Q Consensus 188 ~~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~ 267 (344)
++.+.+.++..+++++ -.+.+.+.+..+.+.|+|.+.|... -...+..|..+.+ ...|||.+-|..|-+
T Consensus 103 ~~~L~~~~~~~Gi~~~-stpfD~~svd~l~~~~vd~~KIgS~-------~~~N~pLL~~va~---~gKPViLStGmaTl~ 171 (385)
T 1vli_A 103 ILPLLDYCREKQVIFL-STVCDEGSADLLQSTSPSAFKIASY-------EINHLPLLKYVAR---LNRPMIFSTAGAEIS 171 (385)
T ss_dssp HHHHHHHHHHTTCEEE-CBCCSHHHHHHHHTTCCSCEEECGG-------GTTCHHHHHHHHT---TCSCEEEECTTCCHH
T ss_pred HHHHHHHHHHcCCcEE-EccCCHHHHHHHHhcCCCEEEECcc-------cccCHHHHHHHHh---cCCeEEEECCCCCHH
Confidence 4567777777888866 3467889999999999999999531 1234566766653 368999999999999
Q ss_pred HHHHHHH----cCC-CEEE
Q 019244 268 DVFKALA----LGA-SGIF 281 (344)
Q Consensus 268 dv~kala----lGA-d~V~ 281 (344)
++..|+. .|. +.+.
T Consensus 172 Ei~~Ave~i~~~Gn~~iiL 190 (385)
T 1vli_A 172 DVHEAWRTIRAEGNNQIAI 190 (385)
T ss_dssp HHHHHHHHHHTTTCCCEEE
T ss_pred HHHHHHHHHHHCCCCcEEE
Confidence 9887764 476 4444
|
| >1rvk_A Isomerase/lactonizing enzyme; enolase superfamily, MR.GI-17937161, NYSGXRC, target T1522, structural genomics, PSI; 1.70A {Agrobacterium tumefaciens} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=93.84 E-value=0.76 Score=43.62 Aligned_cols=89 Identities=12% Similarity=0.073 Sum_probs=66.9
Q ss_pred cHHHHHHHHHhc--CCcEEEEee--cCHHHH----HHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEE
Q 019244 187 SWKDVKWLQTIT--KLPILVKGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 258 (344)
Q Consensus 187 ~~~~i~~i~~~~--~~PvivK~v--~~~~~a----~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~vi 258 (344)
..+.++.+|+.+ ++++.+..- .+.+++ +.+.+.|+++|--- ..+..++.+.++++.+ ++||+
T Consensus 186 ~~e~v~avr~a~g~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iE~P--------~~~~~~~~~~~l~~~~--~iPIa 255 (382)
T 1rvk_A 186 DLKACAAVREAVGPDIRLMIDAFHWYSRTDALALGRGLEKLGFDWIEEP--------MDEQSLSSYKWLSDNL--DIPVV 255 (382)
T ss_dssp HHHHHHHHHHHHCTTSEEEEECCTTCCHHHHHHHHHHHHTTTCSEEECC--------SCTTCHHHHHHHHHHC--SSCEE
T ss_pred HHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCEEeCC--------CChhhHHHHHHHHhhC--CCCEE
Confidence 346788899877 588888753 456554 55667888887421 1123567788887776 79999
Q ss_pred EecCCCC-HHHHHHHHHcC-CCEEEEchH
Q 019244 259 LDGGVRR-GTDVFKALALG-ASGIFIGRP 285 (344)
Q Consensus 259 a~GGIr~-g~dv~kalalG-Ad~V~ig~~ 285 (344)
+++.+.+ ..|+.+++..| +|.|++--.
T Consensus 256 ~dE~~~~~~~~~~~~i~~~~~d~v~ik~~ 284 (382)
T 1rvk_A 256 GPESAAGKHWHRAEWIKAGACDILRTGVN 284 (382)
T ss_dssp ECSSCSSHHHHHHHHHHTTCCSEEEECHH
T ss_pred EeCCccCcHHHHHHHHHcCCCCEEeeCch
Confidence 9999999 99999999987 799998643
|
| >4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A* | Back alignment and structure |
|---|
Probab=93.82 E-value=0.21 Score=47.54 Aligned_cols=92 Identities=20% Similarity=0.246 Sum_probs=58.5
Q ss_pred HHHHHHcCCcEEEEccCCCCCCCCch-hhHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHcCCCEEEEchHHH
Q 019244 213 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 287 (344)
Q Consensus 213 a~~~~~~G~d~I~v~~~gG~~~~~g~-~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~k----alalGAd~V~ig~~~l 287 (344)
++.+++.|+++|.+.|+-|-...-.. .-.+.+..+.+.+.+++|||+.-|=.+-.++++ |-.+|||++++-.|++
T Consensus 86 v~~li~~Gv~Gl~v~GTTGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg~~st~eai~la~~A~~~Gadavlvv~PyY 165 (360)
T 4dpp_A 86 VNIQIQNGAEGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYY 165 (360)
T ss_dssp HHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCS
T ss_pred HHHHHHcCCCEEEecccccChhhCCHHHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCCC
Confidence 45678999999999775442111111 123455556666677899998555455566554 3347999999999977
Q ss_pred HHhhhcChHHHHHHHHHHHH
Q 019244 288 YSLAAEGEKGVRRVLEMLRE 307 (344)
Q Consensus 288 ~~~~~~G~~~v~~~l~~l~~ 307 (344)
+. -.++++.++++.+.+
T Consensus 166 ~k---~sq~gl~~hf~~IA~ 182 (360)
T 4dpp_A 166 GK---TSIEGLIAHFQSVLH 182 (360)
T ss_dssp SC---CCHHHHHHHHHTTGG
T ss_pred CC---CCHHHHHHHHHHHHH
Confidence 53 245666666555433
|
| >1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A | Back alignment and structure |
|---|
Probab=93.81 E-value=0.26 Score=45.58 Aligned_cols=89 Identities=9% Similarity=0.054 Sum_probs=60.4
Q ss_pred HHHHHHHhc-CCcEEEEeec----------CHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEE
Q 019244 190 DVKWLQTIT-KLPILVKGVL----------TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 258 (344)
Q Consensus 190 ~i~~i~~~~-~~PvivK~v~----------~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~vi 258 (344)
.|+.+++.- +.++.|.... ..+.++...++|||.|.+- ++++.+.+.++.+.+ ++|++
T Consensus 139 ~I~Aa~~a~~~~~~~i~aRtda~~~~gl~~ai~ra~ay~eAGAd~i~~e---------~~~~~~~~~~i~~~~--~iP~~ 207 (295)
T 1xg4_A 139 RIRAAVDAKTDPDFVIMARTDALAVEGLDAAIERAQAYVEAGAEMLFPE---------AITELAMYRQFADAV--QVPIL 207 (295)
T ss_dssp HHHHHHHHCSSTTSEEEEEECCHHHHCHHHHHHHHHHHHHTTCSEEEET---------TCCSHHHHHHHHHHH--CSCBE
T ss_pred HHHHHHHhccCCCcEEEEecHHhhhcCHHHHHHHHHHHHHcCCCEEEEe---------CCCCHHHHHHHHHHc--CCCEE
Confidence 455555554 4556555532 1245788999999999983 245677888888888 68998
Q ss_pred EecCC--CCH-HHHHHHHHcCCCEEEEchHHHHH
Q 019244 259 LDGGV--RRG-TDVFKALALGASGIFIGRPVVYS 289 (344)
Q Consensus 259 a~GGI--r~g-~dv~kalalGAd~V~ig~~~l~~ 289 (344)
++.-. .++ ....+.-.+|.+.|.++...+.+
T Consensus 208 ~N~~~~g~~p~~~~~eL~~~G~~~v~~~~~~~~a 241 (295)
T 1xg4_A 208 ANITEFGATPLFTTDELRSAHVAMALYPLSAFRA 241 (295)
T ss_dssp EECCSSSSSCCCCHHHHHHTTCSEEEESSHHHHH
T ss_pred EEecccCCCCCCCHHHHHHcCCCEEEEChHHHHH
Confidence 75432 222 33445556999999999988765
|
| >2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=93.78 E-value=0.18 Score=47.62 Aligned_cols=89 Identities=13% Similarity=0.137 Sum_probs=53.6
Q ss_pred HHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHcCCCEEEEchHHHHH
Q 019244 214 RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVVYS 289 (344)
Q Consensus 214 ~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~k----alalGAd~V~ig~~~l~~ 289 (344)
+.+++.|+|+|.+.|+-|-...-...-...+-+. .+.+++|||+--|=.+-.++++ |-.+|||++++-.|+++.
T Consensus 54 ~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~--~~~grvpViaGvg~~st~eai~la~~A~~~Gadavlv~~P~y~~ 131 (344)
T 2hmc_A 54 KELIADGMSAVVYCGSMGDWPLLTDEQRMEGVER--LVKAGIPVIVGTGAVNTASAVAHAVHAQKVGAKGLMVIPRVLSR 131 (344)
T ss_dssp HHHHHTTCCCEEESSGGGTGGGSCHHHHHHHHHH--HHHTTCCEEEECCCSSHHHHHHHHHHHHHHTCSEEEECCCCSSS
T ss_pred HHHHHcCCCEEEeCccCcChhhCCHHHHHHHHHH--HhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCccCC
Confidence 3467899999999765442111111111222223 3346899998555555555543 334799999999998764
Q ss_pred -hhhcChHHHHHHHHHHHH
Q 019244 290 -LAAEGEKGVRRVLEMLRE 307 (344)
Q Consensus 290 -~~~~G~~~v~~~l~~l~~ 307 (344)
. .++++.++++.+.+
T Consensus 132 ~~---s~~~l~~~f~~IA~ 147 (344)
T 2hmc_A 132 GS---VIAAQKAHFKAILS 147 (344)
T ss_dssp TT---CHHHHHHHHHHHHH
T ss_pred CC---CHHHHHHHHHHHHh
Confidence 2 35666666655543
|
| >3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=93.78 E-value=0.097 Score=48.53 Aligned_cols=90 Identities=18% Similarity=0.203 Sum_probs=56.3
Q ss_pred HHHHHcCCcEEEEccCCCCCCCCch-hhHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHcCCCEEEEchHHHH
Q 019244 214 RIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVVY 288 (344)
Q Consensus 214 ~~~~~~G~d~I~v~~~gG~~~~~g~-~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~k----alalGAd~V~ig~~~l~ 288 (344)
+.+++.|+|+|.+.|+-|-...-.. .-.+.+..+.+.+.+++|||+.-|=.+-.++++ +-.+|||++++..|+++
T Consensus 32 ~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~ 111 (300)
T 3eb2_A 32 DDLIQAGVHGLTPLGSTGEFAYLGTAQREAVVRATIEAAQRRVPVVAGVASTSVADAVAQAKLYEKLGADGILAILEAYF 111 (300)
T ss_dssp HHHHHTTCSCBBTTSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCBEEEEEESSHHHHHHHHHHHHHHTCSEEEEEECCSS
T ss_pred HHHHHcCCCEEEECccccCccccCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCC
Confidence 4577899999988765442111111 123455566666677899998545445555543 33589999999999987
Q ss_pred HhhhcChHHHHHHHHHHH
Q 019244 289 SLAAEGEKGVRRVLEMLR 306 (344)
Q Consensus 289 ~~~~~G~~~v~~~l~~l~ 306 (344)
.. .++++.++++.+.
T Consensus 112 ~~---~~~~l~~~f~~va 126 (300)
T 3eb2_A 112 PL---KDAQIESYFRAIA 126 (300)
T ss_dssp CC---CHHHHHHHHHHHH
T ss_pred CC---CHHHHHHHHHHHH
Confidence 42 4555555555443
|
| >4aaj_A N-(5'-phosphoribosyl)anthranilate isomerase; alpha/beta-barrel, hyperthermophilic, phosphoribo isomerase; 1.75A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=93.72 E-value=0.58 Score=41.56 Aligned_cols=94 Identities=17% Similarity=0.255 Sum_probs=63.8
Q ss_pred CCCCCcHHHHHHHHHhcCCcEEEEee-c-----C-HHHH----HHHHHcCCcEEEEccCCCC--CCCCchhhHHHHHHHH
Q 019244 182 IDRSLSWKDVKWLQTITKLPILVKGV-L-----T-AEDA----RIAVQAGAAGIIVSNHGAR--QLDYVPATIMALEEVV 248 (344)
Q Consensus 182 ~~~~~~~~~i~~i~~~~~~PvivK~v-~-----~-~~~a----~~~~~~G~d~I~v~~~gG~--~~~~g~~~~~~l~~i~ 248 (344)
.+++.+.+.++.+++.+++|+| |-+ . . .+++ ..+....+|++.++..||+ .+|| +.+..+.
T Consensus 98 LHG~E~~~~~~~l~~~~~~~vi-Ka~~v~~~~~~~~~~~~~~~~~~~~~~~d~~LlDs~GGtG~~fDW-----~~~~~~~ 171 (228)
T 4aaj_A 98 VHSNALPQTIDTLKKEFGVFVM-KAFRVPTISKNPEEDANRLLSEISRYNADMVLLDTGAGSGKLHDL-----RVSSLVA 171 (228)
T ss_dssp ECSCCCHHHHHHHHHHHCCEEE-EEEECCSSCSCHHHHHHHHHHHHHHSCCSEEEEEC-------CCC-----HHHHHHH
T ss_pred cccccCHHHHHHHhhccCceEE-EEEEecccccchhhhHHHHHHHHhccCCCEEccCCCCCCcCcCCh-----HHHHHhh
Confidence 4556677889999998888876 543 1 1 2332 3445668999999887765 4566 3344332
Q ss_pred HHccCCCcEEEecCCCCHHHHHHHHH-cCCCEEEEchHH
Q 019244 249 KATQGRIPVFLDGGVRRGTDVFKALA-LGASGIFIGRPV 286 (344)
Q Consensus 249 ~~~~~~~~via~GGIr~g~dv~kala-lGAd~V~ig~~~ 286 (344)
. +.|++.+||+. ++.|.+|+. .+..+|=+.+-+
T Consensus 172 ~----~~p~iLAGGL~-peNV~~Ai~~~~P~gVDVsSGV 205 (228)
T 4aaj_A 172 R----KIPVIVAGGLN-AENVEEVIKVVKPYGVDVSSGV 205 (228)
T ss_dssp H----HSCEEEESSCC-TTTHHHHHHHHCCSEEEESGGG
T ss_pred h----cCCeEEECCCC-HHHHHHHHHHhCCCEEEeCCCC
Confidence 2 47999999996 899999997 799999888865
|
| >3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A* | Back alignment and structure |
|---|
Probab=93.68 E-value=0.13 Score=47.37 Aligned_cols=76 Identities=17% Similarity=0.278 Sum_probs=50.0
Q ss_pred HHHHHcCCcEEEEccCCCCCCCCch-hhHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHcCCCEEEEchHHHH
Q 019244 214 RIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVVY 288 (344)
Q Consensus 214 ~~~~~~G~d~I~v~~~gG~~~~~g~-~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~k----alalGAd~V~ig~~~l~ 288 (344)
+.+++.|+++|.+.|+-|-...-.. .-.+.+..+.+.+.+++|||+--|=.+-.++++ +-.+|||++++-.|+++
T Consensus 29 ~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pvi~Gvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~ 108 (291)
T 3a5f_A 29 EWHIKSKTDAIIVCGTTGEATTMTETERKETIKFVIDKVNKRIPVIAGTGSNNTAASIAMSKWAESIGVDGLLVITPYYN 108 (291)
T ss_dssp HHHHHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSS
T ss_pred HHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCcccHHHHHHHHHHHHhcCCCEEEEcCCCCC
Confidence 4577899999999775443111111 123455556666667899998555555566553 33479999999999876
Q ss_pred H
Q 019244 289 S 289 (344)
Q Consensus 289 ~ 289 (344)
.
T Consensus 109 ~ 109 (291)
T 3a5f_A 109 K 109 (291)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472} | Back alignment and structure |
|---|
Probab=93.57 E-value=5 Score=37.83 Aligned_cols=126 Identities=12% Similarity=0.098 Sum_probs=67.0
Q ss_pred cHHHHHHHHHhcCCcEEEEeec-CHHHHHH----HHHcCCcEEEEccCCCCCCCCch--hhHHHHHHHHHHccCCCcEEE
Q 019244 187 SWKDVKWLQTITKLPILVKGVL-TAEDARI----AVQAGAAGIIVSNHGARQLDYVP--ATIMALEEVVKATQGRIPVFL 259 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v~-~~~~a~~----~~~~G~d~I~v~~~gG~~~~~g~--~~~~~l~~i~~~~~~~~~via 259 (344)
++..|+++.+ +++||++|..+ |.++... +.+.|.+.+.+ |+-+....-+ -.+.+++.+++..+ .+||..
T Consensus 124 N~pLL~~va~-~gKPviLstGmstl~Ei~~Ave~i~~~g~~viLl--hC~s~YPt~~~~~nL~aI~~Lk~~fp-~lpVG~ 199 (350)
T 3g8r_A 124 DWPLLERIAR-SDKPVVASTAGARREDIDKVVSFMLHRGKDLTIM--HCVAEYPTPDDHLHLARIKTLRQQYA-GVRIGY 199 (350)
T ss_dssp CHHHHHHHHT-SCSCEEEECTTCCHHHHHHHHHHHHTTTCCEEEE--ECCCCSSCCGGGCCTTHHHHHHHHCT-TSEEEE
T ss_pred CHHHHHHHHh-hCCcEEEECCCCCHHHHHHHHHHHHHcCCCEEEE--ecCCCCCCCcccCCHHHHHHHHHHCC-CCCEEc
Confidence 5677888876 69999999864 5665443 34567764443 2222221111 12345666665542 588877
Q ss_pred ec---CCCCHHHHHHHHHcCCCEEEEchHHHHH--hhhcChHH-HHHHHHHHHHHHHHHHHHhCCC
Q 019244 260 DG---GVRRGTDVFKALALGASGIFIGRPVVYS--LAAEGEKG-VRRVLEMLREEFELAMALSGCR 319 (344)
Q Consensus 260 ~G---GIr~g~dv~kalalGAd~V~ig~~~l~~--~~~~G~~~-v~~~l~~l~~el~~~m~~~G~~ 319 (344)
|+ |-+. .-+..|+++||+.+ =+.|--. ...++... --+-++.|.++++..-..+|..
T Consensus 200 SdHt~g~~~-~~~~AAvAlGA~vI--EkH~tldr~~g~D~~~Sl~P~ef~~lv~~ir~i~~alG~~ 262 (350)
T 3g8r_A 200 STHEDPDLM-EPIMLAVAQGATVF--EKHVGLPTDQYGINNYSANPEQVRRWLAAAARALAMLGDG 262 (350)
T ss_dssp EECCCSSCC-HHHHHHHHTTCCEE--EEEBCCCBTTBCCCTTCBCHHHHHHHHHHHHHHHHHHCCT
T ss_pred CCCCCCCcc-HHHHHHHHcCCCEE--EEecCcccCCCCcccccCCHHHHHHHHHHHHHHHHHcCCC
Confidence 62 2122 22357899999743 3322110 01111100 0123566777777777777764
|
| >1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=93.56 E-value=1.8 Score=39.43 Aligned_cols=97 Identities=22% Similarity=0.342 Sum_probs=60.7
Q ss_pred cHHHHHHHHHhcCCcEEEEeec--CHHHH----HHHHHcCCcEEEEccCCCCCCCC---chhhHHHHHHHHHHccCCCcE
Q 019244 187 SWKDVKWLQTITKLPILVKGVL--TAEDA----RIAVQAGAAGIIVSNHGARQLDY---VPATIMALEEVVKATQGRIPV 257 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v~--~~~~a----~~~~~~G~d~I~v~~~gG~~~~~---g~~~~~~l~~i~~~~~~~~~v 257 (344)
++..++++.+ +++||++|..+ +.++. ..+...|.+-+++.-.|.+.... -...+..++.+++.. .+||
T Consensus 134 n~~ll~~~a~-~~kPV~lk~G~~~t~~ei~~Ave~i~~~Gn~~i~L~~Rg~~~yp~y~~~~vdl~~i~~lk~~~--~lpV 210 (276)
T 1vs1_A 134 NFPLLREVGR-SGKPVLLKRGFGNTVEELLAAAEYILLEGNWQVVLVERGIRTFEPSTRFTLDVAAVAVLKEAT--HLPV 210 (276)
T ss_dssp CHHHHHHHHH-HTCCEEEECCTTCCHHHHHHHHHHHHHTTCCCEEEEECCBCCSCCSSSSBCBHHHHHHHHHHB--SSCE
T ss_pred CHHHHHHHHc-cCCeEEEcCCCCCCHHHHHHHHHHHHHcCCCeEEEEeCCcCCCCCcCcchhCHHHHHHHHHHh--CCCE
Confidence 4456777765 69999999874 56654 34556787555554335543311 123455666666654 5899
Q ss_pred EEec----CCCC--HHHHHHHHHcCCCEEEEchHH
Q 019244 258 FLDG----GVRR--GTDVFKALALGASGIFIGRPV 286 (344)
Q Consensus 258 ia~G----GIr~--g~dv~kalalGAd~V~ig~~~ 286 (344)
+++. |.+. ..=...++++||++++|-+.+
T Consensus 211 i~dssH~~g~~~~~~~~~~aAva~Ga~Gl~IE~H~ 245 (276)
T 1vs1_A 211 IVDPSHPAGRRSLVPALAKAGLAAGADGLIVEVHP 245 (276)
T ss_dssp EECCHHHHCSGGGHHHHHHHHHHTTCSEEEEEBCS
T ss_pred EEeCCCCCCccchHHHHHHHHHHcCCCEEEEEecC
Confidence 7743 5443 233446788999999999865
|
| >1eix_A Orotidine 5'-monophosphate decarboxylase; alpha-beta-barrel, protein-inhibitor complex, homodimer, lyase; HET: BMQ; 2.50A {Escherichia coli} SCOP: c.1.2.3 PDB: 1jjk_A* 1l2u_A | Back alignment and structure |
|---|
Probab=93.52 E-value=0.13 Score=46.13 Aligned_cols=59 Identities=22% Similarity=0.287 Sum_probs=43.0
Q ss_pred HHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHH----------HHHHHHHcCCCEEEEchH
Q 019244 216 AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT----------DVFKALALGASGIFIGRP 285 (344)
Q Consensus 216 ~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~----------dv~kalalGAd~V~ig~~ 285 (344)
..+.|.++++.+. .+ +.++++..+ +.+++.+|||+... .+.+++..|||.+.+||+
T Consensus 158 ~~~~G~~g~V~~~------------~e-i~~lr~~~~-~~~i~v~gGI~~~g~~~~dq~rv~t~~~a~~aGad~iVvGr~ 223 (245)
T 1eix_A 158 TQKCGLDGVVCSA------------QE-AVRFKQVFG-QEFKLVTPGIRPQGSEAGDQRRIMTPEQALSAGVDYMVIGRP 223 (245)
T ss_dssp HHHTTCSEEECCG------------GG-HHHHHHHHC-SSSEEEECCBCCTTCCCTTCCSCBCHHHHHHTTCSEEEECHH
T ss_pred HHHcCCCeEEeCH------------HH-HHHHHHhcC-CCCEEEECCcCCCCCCccchhccCCHHHHHHcCCCEEEECHH
Confidence 5578888876532 23 555555553 46899999999531 367788999999999999
Q ss_pred HHH
Q 019244 286 VVY 288 (344)
Q Consensus 286 ~l~ 288 (344)
++.
T Consensus 224 I~~ 226 (245)
T 1eix_A 224 VTQ 226 (245)
T ss_dssp HHT
T ss_pred HcC
Confidence 875
|
| >1dbt_A Orotidine 5'-phosphate decarboxylase; UMP, TIM barrel, lyase; HET: U5P; 2.40A {Bacillus subtilis} SCOP: c.1.2.3 | Back alignment and structure |
|---|
Probab=93.51 E-value=0.11 Score=46.31 Aligned_cols=76 Identities=22% Similarity=0.331 Sum_probs=49.4
Q ss_pred HHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHH----------HHHHHHcCCCEEEEc
Q 019244 214 RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD----------VFKALALGASGIFIG 283 (344)
Q Consensus 214 ~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~d----------v~kalalGAd~V~ig 283 (344)
....+.|.++++.+. +-+.++++..+ ..+++.+|||+.... ..+++..|||.+.+|
T Consensus 149 ~~~~~~G~~g~v~~~-------------~~i~~lr~~~~-~~~i~v~gGI~~~~~~~~dq~rv~tp~~a~~aGad~iVvG 214 (239)
T 1dbt_A 149 KQAEESGLDGVVCSV-------------HEAKAIYQAVS-PSFLTVTPGIRMSEDAANDQVRVATPAIAREKGSSAIVVG 214 (239)
T ss_dssp HHHHHTTCSEEECCG-------------GGHHHHTTTSC-TTCEEEECCBCCTTSCCTTCSSCBCHHHHHHTTCSEEEEC
T ss_pred HHHHHhCCCEEEECH-------------HHHHHHHHhcC-CCcEEEeCCcCCCCCCccceeccCCHHHHHHcCCCEEEEC
Confidence 334678888876532 22344444443 468999999986543 367889999999999
Q ss_pred hHHHHHhhhcChHHHHHHHHHHHHHH
Q 019244 284 RPVVYSLAAEGEKGVRRVLEMLREEF 309 (344)
Q Consensus 284 ~~~l~~~~~~G~~~v~~~l~~l~~el 309 (344)
|+++.+ .. ....++.+++++
T Consensus 215 r~I~~a---~d---p~~a~~~l~~~i 234 (239)
T 1dbt_A 215 RSITKA---ED---PVKAYKAVRLEW 234 (239)
T ss_dssp HHHHTS---SC---HHHHHHHHHHHH
T ss_pred hhhcCC---CC---HHHHHHHHHHHH
Confidence 998752 12 234455555544
|
| >4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A | Back alignment and structure |
|---|
Probab=93.32 E-value=0.29 Score=45.29 Aligned_cols=85 Identities=19% Similarity=0.153 Sum_probs=59.9
Q ss_pred HHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCC--CCCc---hhhHHHHHHHHHHccCCCcEEEecCCCCHH
Q 019244 193 WLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ--LDYV---PATIMALEEVVKATQGRIPVFLDGGVRRGT 267 (344)
Q Consensus 193 ~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~--~~~g---~~~~~~l~~i~~~~~~~~~via~GGIr~g~ 267 (344)
-+.+..+.- ++..+.+++.|+...++||+.|.+-...-+. ...| ....+.|.++++.+ .+||++-+++..-.
T Consensus 15 ~~~~~~kgg-v~~d~~~~e~A~~ye~~GA~~lsvLe~~~~Di~~~~g~~R~~~~~~i~~i~~~v--~iPvl~k~~i~~id 91 (297)
T 4adt_A 15 GWCEMLKGG-VIMDVKNVEQAKIAEKAGAIGVMILENIPSELRNTDGVARSVDPLKIEEIRKCI--SINVLAKVRIGHFV 91 (297)
T ss_dssp HHHHTTTTC-EEEEESSHHHHHHHHHHTCSEEEECCCCC-----CCCCCCCCCHHHHHHHHTTC--CSEEEEEEETTCHH
T ss_pred hHHHHhcCC-cccCCCcHHHHHHHHHcCCCEEEEecCCCCcchhcCCcccCCCHHHHHHHHHhc--CCCEEEeccCCcHH
Confidence 344444433 3456788999999999999999875211000 0011 23567888888777 79999998998877
Q ss_pred HHHHHHHcCCCEE
Q 019244 268 DVFKALALGASGI 280 (344)
Q Consensus 268 dv~kalalGAd~V 280 (344)
++-.+.++|||+|
T Consensus 92 e~qil~aaGAD~I 104 (297)
T 4adt_A 92 EAQILEELKVDML 104 (297)
T ss_dssp HHHHHHHTTCSEE
T ss_pred HHHHHHHcCCCEE
Confidence 7777788999999
|
| >1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A* | Back alignment and structure |
|---|
Probab=93.31 E-value=0.67 Score=51.41 Aligned_cols=120 Identities=13% Similarity=0.112 Sum_probs=85.0
Q ss_pred HHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHc-----cCCCcEEE-ecCCCCHHHHHHHHHcCCCEEEEch
Q 019244 211 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT-----QGRIPVFL-DGGVRRGTDVFKALALGASGIFIGR 284 (344)
Q Consensus 211 ~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~-----~~~~~via-~GGIr~g~dv~kalalGAd~V~ig~ 284 (344)
++|..+++.|+..|++|..+-..-..-.|.+-++..+..++ +.++.|++ +|-+|+.-|++-.+-.||++|.=--
T Consensus 591 ~~a~~av~~g~~iliLsDr~~~~~~~~ip~lla~~avh~~L~~~~~R~~~~lvvesg~~r~~Hh~a~l~GyGA~av~Pyl 670 (1479)
T 1ea0_A 591 QETEDAVRGGATHVILTDEAMGPARAAIPAILATGAVHTHLIRSNLRTFTSLNVRTAEGLDTHYFAVLIGVGATTVNAYL 670 (1479)
T ss_dssp HHHHHHHHHTCCEEEEECTTCBTTEEECCHHHHHHHHHHHHHTTTCGGGCEEEEECSSCCSHHHHHHHHTTTCSEEECHH
T ss_pred HHHHHHHHCCCcEEEECCCCCCCCccCcCHHHHHHHHHHHHHhcCccccceEEEEeCCchhHHHHHHHHhcCccccCHHH
Confidence 45788899999999999764211111235554554444432 34677777 7899999999999999999996222
Q ss_pred HH--HHHhhhcC-------hHHHHHHHHHHHHHHHHHHHHhCCCCHhhhccccee
Q 019244 285 PV--VYSLAAEG-------EKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIV 330 (344)
Q Consensus 285 ~~--l~~~~~~G-------~~~v~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l~ 330 (344)
++ +..+...| ++.+.++++.+.++|...|..+|.++++.-++..+.
T Consensus 671 a~e~~~~~~~~~~~~~~~~~~~~~ny~~a~~~Gl~KimskmGIst~~sY~gaqiF 725 (1479)
T 1ea0_A 671 AQEAIAERHRRGLFGSMPLEKGMANYKKAIDDGLLKIMSKMGISVISSYRGGGNF 725 (1479)
T ss_dssp HHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCHHHHTTSCCE
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhccHhhhhhcCCceee
Confidence 22 22222223 357899999999999999999999999988876654
|
| >3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.20 E-value=0.3 Score=44.84 Aligned_cols=69 Identities=30% Similarity=0.399 Sum_probs=53.9
Q ss_pred cCHHHHHHHHHcCCcEEEEccC---CCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCH-------------HHHHH
Q 019244 208 LTAEDARIAVQAGAAGIIVSNH---GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG-------------TDVFK 271 (344)
Q Consensus 208 ~~~~~a~~~~~~G~d~I~v~~~---gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g-------------~dv~k 271 (344)
.+.+++..+.+.|||.|-+... ||. -|+...+..+++.+ ++||.+.=--|.+ .|+..
T Consensus 47 ~s~~~a~~A~~gGAdRIELc~~l~~GGl-----TPS~g~i~~a~~~~--~ipV~vMIRPRgGdF~Ys~~E~~~M~~dI~~ 119 (287)
T 3iwp_A 47 DSVESAVNAERGGADRIELCSGLSEGGT-----TPSMGVLQVVKQSV--QIPVFVMIRPRGGDFLYSDREIEVMKADIRL 119 (287)
T ss_dssp SSHHHHHHHHHHTCSEEEECBCGGGTCB-----CCCHHHHHHHHTTC--CSCEEEECCSSSSCSCCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhCCCEEEECCCCCCCCC-----CCCHHHHHHHHHhc--CCCeEEEEecCCCCcccCHHHHHHHHHHHHH
Confidence 7999999999999999998743 443 35566777776655 6888885444444 79999
Q ss_pred HHHcCCCEEEEc
Q 019244 272 ALALGASGIFIG 283 (344)
Q Consensus 272 alalGAd~V~ig 283 (344)
+.++|||.|.+|
T Consensus 120 ~~~~GAdGvVfG 131 (287)
T 3iwp_A 120 AKLYGADGLVFG 131 (287)
T ss_dssp HHHTTCSEEEEC
T ss_pred HHHcCCCEEEEe
Confidence 999999999999
|
| >2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A* | Back alignment and structure |
|---|
Probab=92.97 E-value=0.35 Score=44.33 Aligned_cols=79 Identities=24% Similarity=0.288 Sum_probs=56.8
Q ss_pred HhcCCcEEEEeecCHHHHHHHHHcCCcEEEEcc--------CCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHH
Q 019244 196 TITKLPILVKGVLTAEDARIAVQAGAAGIIVSN--------HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 267 (344)
Q Consensus 196 ~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~--------~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~ 267 (344)
+..+.|+++ .+...+.++.+.++|+++|.+-. .+|... ....+.+.++++.. ++|++...++.+..
T Consensus 18 ~~~~~~~i~-~~~~~~~a~~~~~~Ga~~i~~~e~v~~~~~~~~G~~~---~~~~~~i~~i~~~~--~~Pvi~~~~~~~~~ 91 (297)
T 2zbt_A 18 EMFKGGVIM-DVTTPEQAVIAEEAGAVAVMALERVPADIRAQGGVAR---MSDPKIIKEIMAAV--SIPVMAKVRIGHFV 91 (297)
T ss_dssp GGGTTEEEE-EESSHHHHHHHHHHTCSEEEECSSCHHHHHHTTCCCC---CCCHHHHHHHHTTC--SSCEEEEEETTCHH
T ss_pred HHhhCCeee-eechHHHHHHHHHCCCcEEEeccccchHHHhhcCCcc---CCCHHHHHHHHHhc--CCCeEEEeccCCHH
Confidence 334667776 45568889999999999997721 122111 12345666666544 68999988888888
Q ss_pred HHHHHHHcCCCEE
Q 019244 268 DVFKALALGASGI 280 (344)
Q Consensus 268 dv~kalalGAd~V 280 (344)
++-.++++|||.|
T Consensus 92 ~~~~~~~aGad~v 104 (297)
T 2zbt_A 92 EAMILEAIGVDFI 104 (297)
T ss_dssp HHHHHHHTTCSEE
T ss_pred HHHHHHHCCCCEE
Confidence 8888999999999
|
| >3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* | Back alignment and structure |
|---|
Probab=92.95 E-value=0.31 Score=48.53 Aligned_cols=68 Identities=16% Similarity=0.221 Sum_probs=52.6
Q ss_pred HHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 019244 210 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 283 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig 283 (344)
.+.++.+.++|+|.|.+....|+ ....++.+.++++..+ ++||++ |+|.+.+++.++..+|||+|.+|
T Consensus 258 ~era~aLveaGvd~I~Id~a~g~----~~~v~~~i~~i~~~~~-~~~vi~-g~v~t~e~a~~~~~aGad~i~vg 325 (511)
T 3usb_A 258 MTRIDALVKASVDAIVLDTAHGH----SQGVIDKVKEVRAKYP-SLNIIA-GNVATAEATKALIEAGANVVKVG 325 (511)
T ss_dssp HHHHHHHHHTTCSEEEEECSCTT----SHHHHHHHHHHHHHCT-TSEEEE-EEECSHHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHHhhccceEEecccccc----hhhhhhHHHHHHHhCC-CceEEe-eeeccHHHHHHHHHhCCCEEEEC
Confidence 56788899999999999754321 2345567788877653 577775 78999999999999999999874
|
| >1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ... | Back alignment and structure |
|---|
Probab=92.84 E-value=0.5 Score=42.78 Aligned_cols=42 Identities=29% Similarity=0.291 Sum_probs=36.6
Q ss_pred cHHHHHHHHHhcCCcEEEEeec-CHHHHHHHHHcCCcEEEEcc
Q 019244 187 SWKDVKWLQTITKLPILVKGVL-TAEDARIAVQAGAAGIIVSN 228 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v~-~~~~a~~~~~~G~d~I~v~~ 228 (344)
..+.++++++..++||.+.+.. +++++..+..+|+|+++|.+
T Consensus 193 ~~~~i~~lr~~~~~pi~vggGI~t~e~~~~~~~agAD~vVVGS 235 (268)
T 1qop_A 193 LHHLIEKLKEYHAAPALQGFGISSPEQVSAAVRAGAAGAISGS 235 (268)
T ss_dssp CHHHHHHHHHTTCCCEEEESSCCSHHHHHHHHHTTCSEEEECH
T ss_pred HHHHHHHHHhccCCcEEEECCCCCHHHHHHHHHcCCCEEEECh
Confidence 4678999999889999998765 59999999999999999954
|
| >1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=92.80 E-value=0.32 Score=46.80 Aligned_cols=68 Identities=12% Similarity=0.231 Sum_probs=50.8
Q ss_pred HHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 019244 210 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 283 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig 283 (344)
.+.++.+.++|+|+|.+....|. -...++.+.++++..+ ++||++ |++.+.+++.++..+|||++.+|
T Consensus 155 ~~~a~~~~~~G~d~i~i~~~~g~----~~~~~e~i~~ir~~~~-~~pviv-~~v~~~~~a~~a~~~Gad~I~vg 222 (404)
T 1eep_A 155 IERVEELVKAHVDILVIDSAHGH----STRIIELIKKIKTKYP-NLDLIA-GNIVTKEAALDLISVGADCLKVG 222 (404)
T ss_dssp HHHHHHHHHTTCSEEEECCSCCS----SHHHHHHHHHHHHHCT-TCEEEE-EEECSHHHHHHHHTTTCSEEEEC
T ss_pred HHHHHHHHHCCCCEEEEeCCCCC----hHHHHHHHHHHHHHCC-CCeEEE-cCCCcHHHHHHHHhcCCCEEEEC
Confidence 46678889999999998322121 1234566777777663 688887 77889999999999999999993
|
| >3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.68 E-value=0.66 Score=42.56 Aligned_cols=95 Identities=16% Similarity=0.254 Sum_probs=63.9
Q ss_pred CCCcHHHHHHHHHhc-CCcEEEEee----cCH-HHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcE
Q 019244 184 RSLSWKDVKWLQTIT-KLPILVKGV----LTA-EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 257 (344)
Q Consensus 184 ~~~~~~~i~~i~~~~-~~PvivK~v----~~~-~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~v 257 (344)
...+.+..+++.+.. ++++.+--. .++ +-.+.+.+.|++.|-.||.- ......++.|.++.+...++++|
T Consensus 137 g~iD~~~~~~Li~~a~~l~vTFHRAFD~~~d~~~Ale~Li~lGvdrILTSG~~----~~a~~Gl~~Lk~Lv~~a~~rI~I 212 (287)
T 3iwp_A 137 GHIDKELCMSLMAICRPLPVTFHRAFDMVHDPMAALETLLTLGFERVLTSGCD----SSALEGLPLIKRLIEQAKGRIVV 212 (287)
T ss_dssp SCBCHHHHHHHHHHHTTSCEEECGGGGGCSCHHHHHHHHHHHTCSEEEECTTS----SSTTTTHHHHHHHHHHHTTSSEE
T ss_pred CCcCHHHHHHHHHHcCCCcEEEECchhccCCHHHHHHHHHHcCCCEEECCCCC----CChHHhHHHHHHHHHHhCCCCEE
Confidence 345666677666655 466655433 234 34577889999999886531 12234456666666666668999
Q ss_pred EEecCCCCHHHHHHHHH-cCCCEEEEc
Q 019244 258 FLDGGVRRGTDVFKALA-LGASGIFIG 283 (344)
Q Consensus 258 ia~GGIr~g~dv~kala-lGAd~V~ig 283 (344)
++.|||+ ...+.+.+. +|++.+=..
T Consensus 213 maGGGV~-~~Ni~~l~~~tG~~~~H~S 238 (287)
T 3iwp_A 213 MPGGGIT-DRNLQRILEGSGATEFHCS 238 (287)
T ss_dssp EECTTCC-TTTHHHHHHHHCCSEEEEC
T ss_pred EECCCcC-HHHHHHHHHhhCCCEEeEC
Confidence 9999998 577777776 899887654
|
| >1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomera; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A | Back alignment and structure |
|---|
Probab=92.63 E-value=0.65 Score=42.89 Aligned_cols=71 Identities=20% Similarity=0.135 Sum_probs=49.9
Q ss_pred HHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHH
Q 019244 211 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 289 (344)
Q Consensus 211 ~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~ 289 (344)
+.++...++|||.|.+-. +.++.+.+.++.+.+..++|+++.-+-....++.+.-.+|.+.|.++...+.+
T Consensus 174 ~Ra~ay~eAGAd~i~~e~--------~~~~~~~~~~i~~~~~~~~P~i~~~~~~~~~~~~eL~~lGv~~v~~~~~~~ra 244 (295)
T 1s2w_A 174 KRAEAYRNAGADAILMHS--------KKADPSDIEAFMKAWNNQGPVVIVPTKYYKTPTDHFRDMGVSMVIWANHNLRA 244 (295)
T ss_dssp HHHHHHHHTTCSEEEECC--------CSSSSHHHHHHHHHHTTCSCEEECCSTTTTSCHHHHHHHTCCEEEECSHHHHH
T ss_pred HHHHHHHHcCCCEEEEcC--------CCCCHHHHHHHHHHcCCCCCEEEeCCCCCCCCHHHHHHcCCcEEEEChHHHHH
Confidence 457789999999999831 13455677778777755699998633111123556667999999999887765
|
| >3ozy_A Putative mandelate racemase; beta-alpha barrel, enolase superfamily member, M-xylarate, U function; HET: DXL; 1.30A {Bordetella bronchiseptica} PDB: 3ozm_A* 3h12_A 3op2_A* | Back alignment and structure |
|---|
Probab=92.62 E-value=0.88 Score=43.50 Aligned_cols=88 Identities=14% Similarity=0.070 Sum_probs=65.0
Q ss_pred cHHHHHHHHHhc--CCcEEEEee--cCHHHH----HHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHH-HHccCCCcE
Q 019244 187 SWKDVKWLQTIT--KLPILVKGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVV-KATQGRIPV 257 (344)
Q Consensus 187 ~~~~i~~i~~~~--~~PvivK~v--~~~~~a----~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~-~~~~~~~~v 257 (344)
+.+.++.+|+.+ ++++.+..- .+.+++ +.+.+.|+++|--- ..+..++.+.+++ +.. ++||
T Consensus 181 d~~~v~avR~a~g~d~~l~vDan~~~~~~~A~~~~~~l~~~~i~~iEqP--------~~~~d~~~~~~l~~~~~--~iPI 250 (389)
T 3ozy_A 181 DAANLRAMRQRVGADVEILVDANQSLGRHDALAMLRILDEAGCYWFEEP--------LSIDDIEGHRILRAQGT--PVRI 250 (389)
T ss_dssp HHHHHHHHHHHHCTTSEEEEECTTCCCHHHHHHHHHHHHHTTCSEEESC--------SCTTCHHHHHHHHTTCC--SSEE
T ss_pred HHHHHHHHHHHcCCCceEEEECCCCcCHHHHHHHHHHHHhcCCCEEECC--------CCcccHHHHHHHHhcCC--CCCE
Confidence 345688888887 578888753 456554 56778899988521 1123566777776 544 7999
Q ss_pred EEecCCCCHHHHHHHHHcC-CCEEEEch
Q 019244 258 FLDGGVRRGTDVFKALALG-ASGIFIGR 284 (344)
Q Consensus 258 ia~GGIr~g~dv~kalalG-Ad~V~ig~ 284 (344)
++++.+.+..|+.+++..| +|.|++--
T Consensus 251 a~dE~i~~~~~~~~~i~~~~~d~v~ik~ 278 (389)
T 3ozy_A 251 ATGENLYTRNAFNDYIRNDAIDVLQADA 278 (389)
T ss_dssp EECTTCCHHHHHHHHHHTTCCSEECCCT
T ss_pred EeCCCCCCHHHHHHHHHcCCCCEEEeCc
Confidence 9999999999999999987 79988754
|
| >1nu5_A Chloromuconate cycloisomerase; enzyme, dehalogenation; 1.95A {Pseudomonas SP} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=92.59 E-value=1.7 Score=40.90 Aligned_cols=88 Identities=9% Similarity=0.063 Sum_probs=64.9
Q ss_pred HHHHHHHHHhc--CCcEEEEee--cCHHH----HHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEE
Q 019244 188 WKDVKWLQTIT--KLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 259 (344)
Q Consensus 188 ~~~i~~i~~~~--~~PvivK~v--~~~~~----a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via 259 (344)
.+.++.+|+.+ ++++.+..- .+.++ ++.+.+.|+++|-= ...+..++.+.++++.. ++||++
T Consensus 175 ~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iEq--------P~~~~~~~~~~~l~~~~--~ipIa~ 244 (370)
T 1nu5_A 175 LEHIRSIVKAVGDRASVRVDVNQGWDEQTASIWIPRLEEAGVELVEQ--------PVPRANFGALRRLTEQN--GVAILA 244 (370)
T ss_dssp HHHHHHHHHHHGGGCEEEEECTTCCCHHHHHHHHHHHHHHTCCEEEC--------CSCTTCHHHHHHHHHHC--SSEEEE
T ss_pred HHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCcceEeC--------CCCcccHHHHHHHHHhC--CCCEEe
Confidence 45678888776 377777743 45555 45577889988741 11234567788887766 799999
Q ss_pred ecCCCCHHHHHHHHHcC-CCEEEEchH
Q 019244 260 DGGVRRGTDVFKALALG-ASGIFIGRP 285 (344)
Q Consensus 260 ~GGIr~g~dv~kalalG-Ad~V~ig~~ 285 (344)
++.+.+..|+.+++..| +|.|++--.
T Consensus 245 dE~~~~~~~~~~~i~~~~~d~v~ik~~ 271 (370)
T 1nu5_A 245 DESLSSLSSAFELARDHAVDAFSLKLC 271 (370)
T ss_dssp STTCCSHHHHHHHHHTTCCSEEEECHH
T ss_pred CCCCCCHHHHHHHHHhCCCCEEEEchh
Confidence 99999999999999987 799998643
|
| >3hjz_A Transaldolase B; parachlorococcus, marine, cyanobacteria; HET: MSE; 1.90A {Prochlorococcus marinus str} | Back alignment and structure |
|---|
Probab=92.55 E-value=0.42 Score=44.89 Aligned_cols=100 Identities=14% Similarity=0.161 Sum_probs=66.7
Q ss_pred cHHHHHHHHHhc--CCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCC-----c--------hhhHHHHHHHHH--
Q 019244 187 SWKDVKWLQTIT--KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDY-----V--------PATIMALEEVVK-- 249 (344)
Q Consensus 187 ~~~~i~~i~~~~--~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~-----g--------~~~~~~l~~i~~-- 249 (344)
+|+-++.++... ++++-+=.+.|...+..+.++|+..|-. .-||-.|| | -+.+..+.++.+
T Consensus 140 T~eGl~A~~~L~~~GI~~N~TliFS~~Qa~~aa~AGa~~ISP--FVgRi~D~~~~~~g~~~~~~~~d~Gv~~v~~i~~~y 217 (334)
T 3hjz_A 140 TWEGIKAAEILEKEGIKCNLTLLFNFCQAVTCANANITLISP--FVGRILDWHKAKTGKTSFIGAEDPGVISVTQIYKYF 217 (334)
T ss_dssp SHHHHHHHHHHHHTTCCEEEESCCSHHHHHHHHHTTCSEECC--BHHHHHHHHHHHHCCCCCCGGGCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHHcCCcEEEe--eccHHHHHhhhccCCcccccccCcHHHHHHHHHHHH
Confidence 576554444332 8898888889999999999999988844 22332221 1 123344444443
Q ss_pred -HccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhh
Q 019244 250 -ATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 291 (344)
Q Consensus 250 -~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~ 291 (344)
..+.+..|++. .+|+..++.. .+|+|.+-+.-.++..+.
T Consensus 218 ~~~g~~T~vl~A-SfRn~~~v~~--laG~d~~Tipp~ll~~L~ 257 (334)
T 3hjz_A 218 KEKGFKTEVMGA-SFRNLDEIKE--LAGCDLLTIAPKFLEELK 257 (334)
T ss_dssp HHHTCCCEEEEB-CCSSHHHHHH--TTTCSEEEECHHHHHHHH
T ss_pred HHcCCCCEEEEe-cCCCHHHHHH--HhCCCEEEcCHHHHHHHH
Confidence 33335666655 5999999987 469999988888877654
|
| >1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A | Back alignment and structure |
|---|
Probab=92.45 E-value=5.1 Score=36.03 Aligned_cols=92 Identities=11% Similarity=0.169 Sum_probs=57.1
Q ss_pred CcHHHHHHHHHhc-CCcEEEEee----cCHH-HHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEE
Q 019244 186 LSWKDVKWLQTIT-KLPILVKGV----LTAE-DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 259 (344)
Q Consensus 186 ~~~~~i~~i~~~~-~~PvivK~v----~~~~-~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via 259 (344)
++.+.++++.+.. ++|+.+--. .++. ..+.+.+.|++.|-.||...+ ....++.|.++.+... ++.|++
T Consensus 101 iD~~~~~~Li~~a~~~~vTFHRAfD~~~d~~~ale~L~~lG~~rILTSG~~~~----a~~g~~~L~~Lv~~a~-~i~Im~ 175 (256)
T 1twd_A 101 VDMPRMEKIMAAAGPLAVTFHRAFDMCANPLYTLNNLAELGIARVLTSGQKSD----ALQGLSKIMELIAHRD-APIIMA 175 (256)
T ss_dssp BCHHHHHHHHHHHTTSEEEECGGGGGCSCHHHHHHHHHHHTCCEEEECTTSSS----TTTTHHHHHHHHTSSS-CCEEEE
T ss_pred cCHHHHHHHHHHhCCCcEEEECchhccCCHHHHHHHHHHcCCCEEECCCCCCC----HHHHHHHHHHHHHhhC-CcEEEe
Confidence 3455555555544 456554332 2343 357889999999987653211 1223445555554444 899999
Q ss_pred ecCCCCHHHHHHHHHcCCCEEEEc
Q 019244 260 DGGVRRGTDVFKALALGASGIFIG 283 (344)
Q Consensus 260 ~GGIr~g~dv~kalalGAd~V~ig 283 (344)
-|||+ ...+.+.+..|++.+=.+
T Consensus 176 GgGv~-~~Ni~~l~~tGv~e~H~S 198 (256)
T 1twd_A 176 GAGVR-AENLHHFLDAGVLEVHSS 198 (256)
T ss_dssp ESSCC-TTTHHHHHHHTCSEEEEC
T ss_pred cCCcC-HHHHHHHHHcCCCeEeEC
Confidence 99998 466666668899888755
|
| >1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A | Back alignment and structure |
|---|
Probab=92.41 E-value=0.63 Score=42.01 Aligned_cols=70 Identities=27% Similarity=0.323 Sum_probs=54.6
Q ss_pred cCHHHHHHHHHcCCcEEEEccC---CCCCCCCchhhHHHHHHHHHHccCCCcEEE-----ecCCCCH--------HHHHH
Q 019244 208 LTAEDARIAVQAGAAGIIVSNH---GARQLDYVPATIMALEEVVKATQGRIPVFL-----DGGVRRG--------TDVFK 271 (344)
Q Consensus 208 ~~~~~a~~~~~~G~d~I~v~~~---gG~~~~~g~~~~~~l~~i~~~~~~~~~via-----~GGIr~g--------~dv~k 271 (344)
.+.+++..+.+.|||-|-+... ||. -|++..+..+++.+ ++||.+ .|++... .|+..
T Consensus 9 ~s~~~a~~A~~~GAdRIELc~~L~~GGl-----TPS~g~i~~~~~~~--~ipv~vMIRPR~GdF~Ys~~E~~~M~~Di~~ 81 (256)
T 1twd_A 9 YSMECALTAQQNGADRVELCAAPKEGGL-----TPSLGVLKSVRQRV--TIPVHPIIRPRGGDFCYSDGEFAAILEDVRT 81 (256)
T ss_dssp SSHHHHHHHHHTTCSEEEECBCGGGTCB-----CCCHHHHHHHHHHC--CSCEEEBCCSSSSCSCCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCEEEEcCCcccCCC-----CCCHHHHHHHHHHc--CCceEEEECCCCCCCcCCHHHHHHHHHHHHH
Confidence 7899999999999999998753 443 35666777777766 688887 4555554 37778
Q ss_pred HHHcCCCEEEEch
Q 019244 272 ALALGASGIFIGR 284 (344)
Q Consensus 272 alalGAd~V~ig~ 284 (344)
+..+|||.|.+|-
T Consensus 82 ~~~~GadGvV~G~ 94 (256)
T 1twd_A 82 VRELGFPGLVTGV 94 (256)
T ss_dssp HHHTTCSEEEECC
T ss_pred HHHcCCCEEEEee
Confidence 8889999999993
|
| >2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A | Back alignment and structure |
|---|
Probab=92.40 E-value=0.87 Score=41.95 Aligned_cols=87 Identities=26% Similarity=0.286 Sum_probs=59.4
Q ss_pred cHHHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEcc--------CCCCCCCCchhhHHHHHHHHHHccCCCcEE
Q 019244 187 SWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSN--------HGARQLDYVPATIMALEEVVKATQGRIPVF 258 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~--------~gG~~~~~g~~~~~~l~~i~~~~~~~~~vi 258 (344)
++...+.+.+..+.++++ .....+.++.+.++|+++|.+-+ .+|.. .....+.+.++++.+ ++||+
T Consensus 9 ~~~~~~~~~~~~~~g~i~-~~~~~~~a~~~~~~Ga~~I~~l~p~~~~~~~~~G~~---~~~~~~~i~~I~~~~--~iPv~ 82 (305)
T 2nv1_A 9 TERVKRGMAEMQKGGVIM-DVINAEQAKIAEEAGAVAVMALERVPADIRAAGGVA---RMADPTIVEEVMNAV--SIPVM 82 (305)
T ss_dssp CHHHHHHHHHTTTTCEEE-EESSHHHHHHHHHTTCSEEEECCC-------CCCCC---CCCCHHHHHHHHHHC--SSCEE
T ss_pred cHHHHHHHHHHccCCeee-cCCHHHHHHHHHHcCCCEEEEcCCCcchhhhccCcc---cCCCHHHHHHHHHhC--CCCEE
Confidence 344555566666778887 56778899999999999994322 12211 123456777777765 68988
Q ss_pred EecCCCC--HHHHHHHHHcCCCEEE
Q 019244 259 LDGGVRR--GTDVFKALALGASGIF 281 (344)
Q Consensus 259 a~GGIr~--g~dv~kalalGAd~V~ 281 (344)
+ +++. -.++-.++++|||.|.
T Consensus 83 ~--k~r~g~~~~~~~~~a~GAd~V~ 105 (305)
T 2nv1_A 83 A--KARIGHIVEARVLEAMGVDYID 105 (305)
T ss_dssp E--EECTTCHHHHHHHHHHTCSEEE
T ss_pred e--cccccchHHHHHHHHCCCCEEE
Confidence 4 5555 5666777889999996
|
| >3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A* | Back alignment and structure |
|---|
Probab=92.05 E-value=0.24 Score=45.43 Aligned_cols=44 Identities=14% Similarity=0.143 Sum_probs=38.8
Q ss_pred CCcHHHHHHHHHhc--CCcEEEEe-ecCHHHHHHHHHcCCcEEEEcc
Q 019244 185 SLSWKDVKWLQTIT--KLPILVKG-VLTAEDARIAVQAGAAGIIVSN 228 (344)
Q Consensus 185 ~~~~~~i~~i~~~~--~~PvivK~-v~~~~~a~~~~~~G~d~I~v~~ 228 (344)
....+.|+++++.+ ++||++.+ +.++++++.+.++|||+|+|++
T Consensus 211 ~v~~e~V~~I~~~~~~~iPV~vGGGIrs~Eda~~ll~aGAD~VVVGS 257 (286)
T 3vk5_A 211 HVPPEVVRHFRKGLGPDQVLFVSGNVRSGRQVTEYLDSGADYVGFAG 257 (286)
T ss_dssp CCCHHHHHHHHHHSCTTCEEEEESSCCSHHHHHHHHHTTCSEEEESG
T ss_pred cCCHHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHHcCCCEEEECc
Confidence 34678899999999 89999986 5899999999999999999965
|
| >1mdl_A Mandelate racemase; isomerase, mandelate pathway, magnesium; HET: RMN SMN; 1.85A {Pseudomonas aeruginosa} SCOP: c.1.11.2 d.54.1.1 PDB: 1mdr_A* 3uxk_A* 3uxl_A* 1dtn_A* 1mra_A* 2mnr_A 1mns_A | Back alignment and structure |
|---|
Probab=92.04 E-value=0.59 Score=44.02 Aligned_cols=89 Identities=16% Similarity=0.162 Sum_probs=67.4
Q ss_pred cHHHHHHHHHhc--CCcEEEEee--cCHHH----HHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEE
Q 019244 187 SWKDVKWLQTIT--KLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 258 (344)
Q Consensus 187 ~~~~i~~i~~~~--~~PvivK~v--~~~~~----a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~vi 258 (344)
..+.++.+|+.+ ++|+.++.- .+.++ ++.+.+.|+++|--- ..+..++.+.++++.+ ++||+
T Consensus 175 ~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iE~P--------~~~~~~~~~~~l~~~~--~iPI~ 244 (359)
T 1mdl_A 175 DLAVVRSIRQAVGDDFGIMVDYNQSLDVPAAIKRSQALQQEGVTWIEEP--------TLQHDYEGHQRIQSKL--NVPVQ 244 (359)
T ss_dssp HHHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHHHHTCSCEECC--------SCTTCHHHHHHHHHTC--SSCEE
T ss_pred HHHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHHHhCCCeEECC--------CChhhHHHHHHHHHhC--CCCEE
Confidence 445789999987 588988853 45655 456778899987421 1234567778887765 79999
Q ss_pred EecCCCCHHHHHHHHHcC-CCEEEEchH
Q 019244 259 LDGGVRRGTDVFKALALG-ASGIFIGRP 285 (344)
Q Consensus 259 a~GGIr~g~dv~kalalG-Ad~V~ig~~ 285 (344)
+++.+.+..|+.+++..| +|.|++-..
T Consensus 245 ~de~~~~~~~~~~~i~~~~~d~v~ik~~ 272 (359)
T 1mdl_A 245 MGENWLGPEEMFKALSIGACRLAMPDAM 272 (359)
T ss_dssp ECTTCCSHHHHHHHHHTTCCSEECCBTT
T ss_pred eCCCCCCHHHHHHHHHcCCCCEEeecch
Confidence 999999999999999987 899998643
|
| >2ovl_A Putative racemase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.13A {Streptomyces coelicolor A3} PDB: 3ck5_A | Back alignment and structure |
|---|
Probab=91.96 E-value=0.64 Score=44.01 Aligned_cols=89 Identities=15% Similarity=0.110 Sum_probs=67.2
Q ss_pred cHHHHHHHHHhc--CCcEEEEee--cCHHHH----HHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEE
Q 019244 187 SWKDVKWLQTIT--KLPILVKGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 258 (344)
Q Consensus 187 ~~~~i~~i~~~~--~~PvivK~v--~~~~~a----~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~vi 258 (344)
..+.++.+|+.+ ++|+.++.- .+.+++ +.+.+.|+++|--- ..+..++.+.++++.+ ++||+
T Consensus 177 ~~e~v~avr~a~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iEqP--------~~~~d~~~~~~l~~~~--~iPI~ 246 (371)
T 2ovl_A 177 DVDRVSALREHLGDSFPLMVDANMKWTVDGAIRAARALAPFDLHWIEEP--------TIPDDLVGNARIVRES--GHTIA 246 (371)
T ss_dssp HHHHHHHHHHHHCTTSCEEEECTTCSCHHHHHHHHHHHGGGCCSEEECC--------SCTTCHHHHHHHHHHH--CSCEE
T ss_pred HHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCEEECC--------CCcccHHHHHHHHhhC--CCCEE
Confidence 345689999987 589988853 466554 55667888887421 1234577788887776 79999
Q ss_pred EecCCCCHHHHHHHHHcC-CCEEEEchH
Q 019244 259 LDGGVRRGTDVFKALALG-ASGIFIGRP 285 (344)
Q Consensus 259 a~GGIr~g~dv~kalalG-Ad~V~ig~~ 285 (344)
+++.+.+..|+.+++..| +|.|++...
T Consensus 247 ~dE~~~~~~~~~~~i~~~~~d~v~ik~~ 274 (371)
T 2ovl_A 247 GGENLHTLYDFHNAVRAGSLTLPEPDVS 274 (371)
T ss_dssp ECTTCCSHHHHHHHHHHTCCSEECCCTT
T ss_pred eCCCCCCHHHHHHHHHcCCCCEEeeCcc
Confidence 999999999999999987 899988643
|
| >3rcy_A Mandelate racemase/muconate lactonizing enzyme-LI protein; structural genomics, protein structure initiative; HET: RIB; 1.99A {Roseovarius SP} PDB: 3t4w_A | Back alignment and structure |
|---|
Probab=91.78 E-value=3.3 Score=40.15 Aligned_cols=89 Identities=18% Similarity=0.126 Sum_probs=66.7
Q ss_pred cHHHHHHHHHhc--CCcEEEEee--cCHHHH----HHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEE
Q 019244 187 SWKDVKWLQTIT--KLPILVKGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 258 (344)
Q Consensus 187 ~~~~i~~i~~~~--~~PvivK~v--~~~~~a----~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~vi 258 (344)
+.+.++.+|+.+ ++++.+..- .+.++| +.+.+.|+++|--- ..+..++.+.++++.. .+||+
T Consensus 189 d~e~v~avR~avG~d~~L~vDan~~~t~~~A~~~~~~Le~~~i~~iEeP--------~~~~~~~~~~~l~~~~--~iPIa 258 (433)
T 3rcy_A 189 SVEFCRKIRAAVGDKADLLFGTHGQFTTAGAIRLGQAIEPYSPLWYEEP--------VPPDNVGAMAQVARAV--RIPVA 258 (433)
T ss_dssp HHHHHHHHHHHHTTSSEEEECCCSCBCHHHHHHHHHHHGGGCCSEEECC--------SCTTCHHHHHHHHHHS--SSCEE
T ss_pred HHHHHHHHHHHhCCCCeEEEeCCCCCCHHHHHHHHHHhhhcCCCEEECC--------CChhhHHHHHHHHhcc--CCCEE
Confidence 456788999887 478887653 566664 45667888888521 1123567788888776 79999
Q ss_pred EecCCCCHHHHHHHHHcC-CCEEEEchH
Q 019244 259 LDGGVRRGTDVFKALALG-ASGIFIGRP 285 (344)
Q Consensus 259 a~GGIr~g~dv~kalalG-Ad~V~ig~~ 285 (344)
+++.+.+..|+.+++..| +|.|++--.
T Consensus 259 ~dE~~~~~~~~~~~l~~g~~D~v~~d~~ 286 (433)
T 3rcy_A 259 TGERLTTKAEFAPVLREGAAAILQPALG 286 (433)
T ss_dssp ECTTCCSHHHHHHHHHTTCCSEECCCHH
T ss_pred ecCCCCCHHHHHHHHHcCCCCEEEeCch
Confidence 999999999999999987 788887643
|
| >2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A* | Back alignment and structure |
|---|
Probab=91.70 E-value=0.99 Score=41.93 Aligned_cols=80 Identities=19% Similarity=0.182 Sum_probs=58.1
Q ss_pred HHHHHHHHhcCCcEEEEeecC--------HHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEe
Q 019244 189 KDVKWLQTITKLPILVKGVLT--------AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD 260 (344)
Q Consensus 189 ~~i~~i~~~~~~PvivK~v~~--------~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~ 260 (344)
+.++++++.++.|+.+-...+ .+.++.+.++|+|+|.+.. |. | .+.+..+.+. .++++.
T Consensus 57 ~~i~~i~~~~~~p~~v~l~v~~~~~~~~~~~~~~~~~~~g~d~V~~~~--g~------p-~~~~~~l~~~---gi~vi~- 123 (328)
T 2gjl_A 57 AEIARCRELTDRPFGVNLTLLPTQKPVPYAEYRAAIIEAGIRVVETAG--ND------P-GEHIAEFRRH---GVKVIH- 123 (328)
T ss_dssp HHHHHHHHHCSSCCEEEEEECCCSSCCCHHHHHHHHHHTTCCEEEEEE--SC------C-HHHHHHHHHT---TCEEEE-
T ss_pred HHHHHHHHhcCCCeEEEEeccccccCccHHHHHHHHHhcCCCEEEEcC--CC------c-HHHHHHHHHc---CCCEEe-
Confidence 357777777777887766554 3678889999999998742 21 2 3444444432 578875
Q ss_pred cCCCCHHHHHHHHHcCCCEEEE
Q 019244 261 GGVRRGTDVFKALALGASGIFI 282 (344)
Q Consensus 261 GGIr~g~dv~kalalGAd~V~i 282 (344)
.+.+..++.++...|||++.+
T Consensus 124 -~v~t~~~a~~~~~~GaD~i~v 144 (328)
T 2gjl_A 124 -KCTAVRHALKAERLGVDAVSI 144 (328)
T ss_dssp -EESSHHHHHHHHHTTCSEEEE
T ss_pred -eCCCHHHHHHHHHcCCCEEEE
Confidence 388999999999999999998
|
| >2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A* | Back alignment and structure |
|---|
Probab=91.66 E-value=0.58 Score=44.27 Aligned_cols=67 Identities=19% Similarity=0.169 Sum_probs=48.9
Q ss_pred HHHHHHHHc--CCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 019244 211 EDARIAVQA--GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 283 (344)
Q Consensus 211 ~~a~~~~~~--G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig 283 (344)
+.+..+.+. |++.+.+....|. ....++.+.++++..+ ++||++ |++.+.+|+.++..+|||+|.++
T Consensus 121 ~~~~~l~~~~~g~~~i~i~~~~g~----~~~~~~~i~~lr~~~~-~~~vi~-g~v~t~e~A~~a~~aGaD~I~v~ 189 (351)
T 2c6q_A 121 EQLEQILEAIPQVKYICLDVANGY----SEHFVEFVKDVRKRFP-QHTIMA-GNVVTGEMVEELILSGADIIKVG 189 (351)
T ss_dssp HHHHHHHHHCTTCCEEEEECSCTT----BHHHHHHHHHHHHHCT-TSEEEE-EEECSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHhccCCCCEEEEEecCCC----cHHHHHHHHHHHHhcC-CCeEEE-EeCCCHHHHHHHHHhCCCEEEEC
Confidence 345566676 9999887643221 1335677888777653 688885 77899999999999999999775
|
| >1vqt_A Orotidine 5'-phosphate decarboxylase; TM0332, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.00A {Thermotoga maritima} SCOP: c.1.2.3 | Back alignment and structure |
|---|
Probab=91.55 E-value=0.16 Score=44.67 Aligned_cols=59 Identities=15% Similarity=0.152 Sum_probs=39.1
Q ss_pred HHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHH---H------HHHHHHcCCCEEEE
Q 019244 212 DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT---D------VFKALALGASGIFI 282 (344)
Q Consensus 212 ~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~---d------v~kalalGAd~V~i 282 (344)
.++. .+.|+| ++++ + +.+..+++.++ .+ +.++||+--. | ..+ +..|||.+.+
T Consensus 131 ~a~~-~e~G~d-vV~~----------~---~~~~~ir~~~~--~~-~v~pGI~~~~~~~dq~rv~t~~~-i~aGad~iVv 191 (213)
T 1vqt_A 131 IEKL-NKLGCD-FVLP----------G---PWAKALREKIK--GK-ILVPGIRMEVKADDQKDVVTLEE-MKGIANFAVL 191 (213)
T ss_dssp HHHH-HHHTCE-EECC----------H---HHHHHHTTTCC--SC-EEECCBC---------CCBCHHH-HTTTCSEEEE
T ss_pred HHHH-hcCCCE-EEEc----------H---HHHHHHHHHCC--CC-EEECCCCCCCCccchhhcCCHHH-HHCCCCEEEE
Confidence 3556 888999 5442 1 34555555443 35 8889997543 2 667 8999999999
Q ss_pred chHHHHH
Q 019244 283 GRPVVYS 289 (344)
Q Consensus 283 g~~~l~~ 289 (344)
||+++.+
T Consensus 192 GR~I~~a 198 (213)
T 1vqt_A 192 GREIYLS 198 (213)
T ss_dssp SHHHHTS
T ss_pred ChhhcCC
Confidence 9999863
|
| >3eez_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, unknown function, PSI-2, protein structure initiative; 2.80A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=91.47 E-value=2.9 Score=39.62 Aligned_cols=86 Identities=14% Similarity=-0.003 Sum_probs=60.2
Q ss_pred HHHHHHHHHhc--CCcEEEEee--cCHHHHH----HHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEE
Q 019244 188 WKDVKWLQTIT--KLPILVKGV--LTAEDAR----IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 259 (344)
Q Consensus 188 ~~~i~~i~~~~--~~PvivK~v--~~~~~a~----~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via 259 (344)
.+.++.+|+.+ ++++.++.- .+.+++. .+.+.|+ +|-= . .+.++.+.++++.. ++||++
T Consensus 176 ~~~v~avR~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i-~iEq-------P---~~~~~~~~~l~~~~--~iPIa~ 242 (378)
T 3eez_A 176 IARIRDVEDIREPGEIVLYDVNRGWTRQQALRVMRATEDLHV-MFEQ-------P---GETLDDIAAIRPLH--SAPVSV 242 (378)
T ss_dssp HHHHHHHTTSCCTTCEEEEECTTCCCHHHHHHHHHHTGGGTC-CEEC-------C---SSSHHHHHHTGGGC--CCCEEE
T ss_pred HHHHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHhccCCe-EEec-------C---CCCHHHHHHHHhhC--CCCEEE
Confidence 45677888877 477887753 4566543 3445665 5531 0 12556666666554 799999
Q ss_pred ecCCCCHHHHHHHHHcC-CCEEEEchHH
Q 019244 260 DGGVRRGTDVFKALALG-ASGIFIGRPV 286 (344)
Q Consensus 260 ~GGIr~g~dv~kalalG-Ad~V~ig~~~ 286 (344)
++.+.+..|+.+++..| +|.|++....
T Consensus 243 dE~~~~~~~~~~~l~~~~~d~v~ik~~~ 270 (378)
T 3eez_A 243 DECLVTLQDAARVARDGLAEVFGIKLNR 270 (378)
T ss_dssp CTTCCSHHHHHHHHHTTCCSEEEEEHHH
T ss_pred CCCCCCHHHHHHHHHcCCCCEEEeCchh
Confidence 99999999999999987 7999987644
|
| >3dg3_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding; 1.60A {Mycobacterium smegmatis} PDB: 3dg6_A* 3dg7_A* | Back alignment and structure |
|---|
Probab=91.45 E-value=2.7 Score=39.63 Aligned_cols=90 Identities=17% Similarity=0.124 Sum_probs=63.6
Q ss_pred HHHHHHHHHhc--CCcEEEEee--cCHHHHH----HHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEE
Q 019244 188 WKDVKWLQTIT--KLPILVKGV--LTAEDAR----IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 259 (344)
Q Consensus 188 ~~~i~~i~~~~--~~PvivK~v--~~~~~a~----~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via 259 (344)
.+.++.+|+.+ +.++.+..- .+.+++. .+.+.|+++|-= ...+..++.+.++++.. .+||++
T Consensus 172 ~~~v~avR~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iEq--------P~~~~d~~~~~~l~~~~--~iPIa~ 241 (367)
T 3dg3_A 172 TAVVRALRERFGDAIELYVDGNRGWSAAESLRAMREMADLDLLFAEE--------LCPADDVLSRRRLVGQL--DMPFIA 241 (367)
T ss_dssp HHHHHHHHHHHGGGSEEEEECTTCSCHHHHHHHHHHTTTSCCSCEES--------CSCTTSHHHHHHHHHHC--SSCEEE
T ss_pred HHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEC--------CCCcccHHHHHHHHHhC--CCCEEe
Confidence 45688888876 477777643 4666654 344567777641 01123466777777766 799999
Q ss_pred ecCCCCHHHHHHHHHcC-CCEEEEchHHH
Q 019244 260 DGGVRRGTDVFKALALG-ASGIFIGRPVV 287 (344)
Q Consensus 260 ~GGIr~g~dv~kalalG-Ad~V~ig~~~l 287 (344)
++.+.+..|+.+++..| +|.|++--...
T Consensus 242 dE~~~~~~~~~~~i~~~~~d~v~~k~~~~ 270 (367)
T 3dg3_A 242 DESVPTPADVTREVLGGSATAISIKTART 270 (367)
T ss_dssp CTTCSSHHHHHHHHHHTSCSEEEECHHHH
T ss_pred cCCcCCHHHHHHHHHcCCCCEEEeehhhh
Confidence 99999999999999987 79999865444
|
| >3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri} | Back alignment and structure |
|---|
Probab=91.42 E-value=2.8 Score=35.74 Aligned_cols=88 Identities=20% Similarity=0.164 Sum_probs=52.6
Q ss_pred HHHHHHHHHhc-CCcEEE--EeecC-HHH-HHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEE-ec
Q 019244 188 WKDVKWLQTIT-KLPILV--KGVLT-AED-ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL-DG 261 (344)
Q Consensus 188 ~~~i~~i~~~~-~~Pviv--K~v~~-~~~-a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via-~G 261 (344)
.+.++++++.+ +.|+++ | +.+ ++. ++.+.++|+|+|++....+ ...+..+.+..+.. .+++.+ .-
T Consensus 41 ~~~i~~l~~~~~~~~i~~~l~-~~di~~~~~~~a~~~Gad~v~vh~~~~------~~~~~~~~~~~~~~--g~~~gv~~~ 111 (207)
T 3ajx_A 41 LSVITAVKKAHPDKIVFADMK-TMDAGELEADIAFKAGADLVTVLGSAD------DSTIAGAVKAAQAH--NKGVVVDLI 111 (207)
T ss_dssp THHHHHHHHHSTTSEEEEEEE-ECSCHHHHHHHHHHTTCSEEEEETTSC------HHHHHHHHHHHHHH--TCEEEEECT
T ss_pred HHHHHHHHHhCCCCeEEEEEE-ecCccHHHHHHHHhCCCCEEEEeccCC------hHHHHHHHHHHHHc--CCceEEEEe
Confidence 35789999887 789886 7 445 666 8899999999999854322 12232222222211 344422 22
Q ss_pred CCCCHHHHHHH-HHcCCCEEEEch
Q 019244 262 GVRRGTDVFKA-LALGASGIFIGR 284 (344)
Q Consensus 262 GIr~g~dv~ka-lalGAd~V~ig~ 284 (344)
...|+.+.++. ..+|+|.|.+..
T Consensus 112 s~~~p~~~~~~~~~~g~d~v~~~~ 135 (207)
T 3ajx_A 112 GIEDKATRAQEVRALGAKFVEMHA 135 (207)
T ss_dssp TCSSHHHHHHHHHHTTCSEEEEEC
T ss_pred cCCChHHHHHHHHHhCCCEEEEEe
Confidence 33366664444 467999995543
|
| >3vav_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics, seattle structural genomics center for infectious disease; 1.80A {Burkholderia thailandensis} SCOP: c.1.12.8 PDB: 3ez4_A | Back alignment and structure |
|---|
Probab=91.32 E-value=2.1 Score=38.99 Aligned_cols=97 Identities=18% Similarity=0.169 Sum_probs=64.8
Q ss_pred CCcHHHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCC----CCCCchhhHHH-H---HHHHHHccCCCc
Q 019244 185 SLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----QLDYVPATIMA-L---EEVVKATQGRIP 256 (344)
Q Consensus 185 ~~~~~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~----~~~~g~~~~~~-l---~~i~~~~~~~~~ 256 (344)
..+...++++++. +-|+++=.+-+.-.|+.+.++|+|.|-++...+. ..|.++-+++- + +.+++.. .+.|
T Consensus 15 ~~t~~~lr~~~~~-g~~i~m~tayDa~sA~l~e~aG~d~ilvGdSl~~~~lG~~dt~~vtldem~~h~~aV~r~~-~~~~ 92 (275)
T 3vav_A 15 AVTVPKLQAMREA-GEKIAMLTCYDASFAALLDRANVDVQLIGDSLGNVLQGQTTTLPVTLDDIAYHTACVARAQ-PRAL 92 (275)
T ss_dssp CCCHHHHHHHHHH-TCCEEEEECCSHHHHHHHHHTTCSEEEECTTHHHHTTCCSSSTTCCHHHHHHHHHHHHHTC-CSSE
T ss_pred CcCHHHHHHHHHC-CCcEEEEeCcCHHHHHHHHHcCCCEEEECcHHHHHHcCCCCCCccCHHHHHHHHHHHHhcC-CCCC
Confidence 3466677776664 5688887788899999999999999966432221 12344445432 3 3333333 2589
Q ss_pred EEEe---cCCCCHHHHH----HHHHcCCCEEEEc
Q 019244 257 VFLD---GGVRRGTDVF----KALALGASGIFIG 283 (344)
Q Consensus 257 via~---GGIr~g~dv~----kalalGAd~V~ig 283 (344)
|++| ||..+..+++ +.+..||++|-+-
T Consensus 93 vvaD~pfgsY~s~~~a~~~a~rl~kaGa~aVklE 126 (275)
T 3vav_A 93 IVADLPFGTYGTPADAFASAVKLMRAGAQMVKFE 126 (275)
T ss_dssp EEEECCTTSCSSHHHHHHHHHHHHHTTCSEEEEE
T ss_pred EEEecCCCCCCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 9997 4567888875 5667899999875
|
| >2qgy_A Enolase from the environmental genome shotgun sequencing of the sargasso SEA; structural genomics, unknown function, PSI-2; 1.80A {Environmental sample} | Back alignment and structure |
|---|
Probab=91.21 E-value=0.95 Score=43.21 Aligned_cols=87 Identities=13% Similarity=0.028 Sum_probs=66.3
Q ss_pred cHHHHHHHHHhc--CCcEEEEee--cCHHHH----HHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEE
Q 019244 187 SWKDVKWLQTIT--KLPILVKGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 258 (344)
Q Consensus 187 ~~~~i~~i~~~~--~~PvivK~v--~~~~~a----~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~vi 258 (344)
..+.++.+|+.+ ++|+.++.- .+.+++ +.+.+.|+++|--- ..+..++.+.++++.+ ++||+
T Consensus 180 ~~e~v~avR~a~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iEqP--------~~~~d~~~~~~l~~~~--~iPIa 249 (391)
T 2qgy_A 180 SIQFVEKVREIVGDELPLMLDLAVPEDLDQTKSFLKEVSSFNPYWIEEP--------VDGENISLLTEIKNTF--NMKVV 249 (391)
T ss_dssp HHHHHHHHHHHHCSSSCEEEECCCCSCHHHHHHHHHHHGGGCCSEEECS--------SCTTCHHHHHHHHHHC--SSCEE
T ss_pred HHHHHHHHHHHhCCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEeCC--------CChhhHHHHHHHHhhC--CCCEE
Confidence 446789999987 589998853 466654 55667898887521 1124567788887776 79999
Q ss_pred EecCCCCHHHHHHHHHcC-CCEEEEc
Q 019244 259 LDGGVRRGTDVFKALALG-ASGIFIG 283 (344)
Q Consensus 259 a~GGIr~g~dv~kalalG-Ad~V~ig 283 (344)
+++.+.+..|+.+++..| +|.|++-
T Consensus 250 ~dE~~~~~~~~~~~i~~~~~d~v~ik 275 (391)
T 2qgy_A 250 TGEKQSGLVHFRELISRNAADIFNPD 275 (391)
T ss_dssp ECTTCCSHHHHHHHHHTTCCSEECCB
T ss_pred EcCCcCCHHHHHHHHHcCCCCEEEEC
Confidence 999999999999999987 7999884
|
| >1nsj_A PRAI, phosphoribosyl anthranilate isomerase; thermostability; 2.00A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1lbm_A 1dl3_A | Back alignment and structure |
|---|
Probab=90.95 E-value=0.53 Score=41.08 Aligned_cols=92 Identities=14% Similarity=0.187 Sum_probs=62.0
Q ss_pred CCCCcHHHHHHHHHhcCCcEEEEee--cCHHHHHHHHHcCCcEEEEccC----CCC--CCCCchhhHHHHHHHHHHccCC
Q 019244 183 DRSLSWKDVKWLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVSNH----GAR--QLDYVPATIMALEEVVKATQGR 254 (344)
Q Consensus 183 ~~~~~~~~i~~i~~~~~~PvivK~v--~~~~~a~~~~~~G~d~I~v~~~----gG~--~~~~g~~~~~~l~~i~~~~~~~ 254 (344)
|++.+.+.++.+++ ++|+| |-+ .+.++...+.+..+|++.++.. ||+ .+||.. +..+. ..+
T Consensus 83 HG~e~~~~~~~l~~--~~~vi-ka~~v~~~~~l~~~~~~~~d~~LlD~~~~~~GGtG~~fdw~~-----l~~~~---~~~ 151 (205)
T 1nsj_A 83 HGEEPIELCRKIAE--RILVI-KAVGVSNERDMERALNYREFPILLDTKTPEYGGSGKTFDWSL-----ILPYR---DRF 151 (205)
T ss_dssp CSCCCHHHHHHHHT--TSEEE-EEEEESSHHHHHHHGGGTTSCEEEEESCSSSSSCCSCCCGGG-----TGGGG---GGS
T ss_pred CCCCCHHHHHHHhc--CCCEE-EEEEcCCHHHHHHHHHcCCCEEEECCCCCCCCCCCCccCHHH-----HHhhh---cCC
Confidence 44556677777764 46766 543 3555655555556999999864 554 456642 22211 125
Q ss_pred CcEEEecCCCCHHHHHHHHH-cCCCEEEEchHH
Q 019244 255 IPVFLDGGVRRGTDVFKALA-LGASGIFIGRPV 286 (344)
Q Consensus 255 ~~via~GGIr~g~dv~kala-lGAd~V~ig~~~ 286 (344)
.|++.+||+. ++++.+++. +++.+|=+.+.+
T Consensus 152 ~p~~LAGGL~-peNV~~ai~~~~p~gVDvsSGv 183 (205)
T 1nsj_A 152 RYLVLSGGLN-PENVRSAIDVVRPFAVDVSSGV 183 (205)
T ss_dssp SCEEEESSCC-TTTHHHHHHHHCCSEEEESGGG
T ss_pred CcEEEECCCC-HHHHHHHHHhcCCCEEEECCce
Confidence 7999999995 889999987 699999999866
|
| >1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A* | Back alignment and structure |
|---|
Probab=90.94 E-value=2.3 Score=47.39 Aligned_cols=120 Identities=14% Similarity=0.138 Sum_probs=84.9
Q ss_pred HHHHHHHHcCCcEEEEccCC-C--CCCCC-chhhHHHHHHHHHH-----ccCCCcEEE-ecCCCCHHHHHHHHHcCCCEE
Q 019244 211 EDARIAVQAGAAGIIVSNHG-A--RQLDY-VPATIMALEEVVKA-----TQGRIPVFL-DGGVRRGTDVFKALALGASGI 280 (344)
Q Consensus 211 ~~a~~~~~~G~d~I~v~~~g-G--~~~~~-g~~~~~~l~~i~~~-----~~~~~~via-~GGIr~g~dv~kalalGAd~V 280 (344)
++|..+++.|+..|++|..+ + ...+. -.|.+-++..+..+ ++.++.|++ +|-+|+.-|++-.+-.||++|
T Consensus 585 ~~a~~av~~g~~iliLsDr~~~~~~~~~~~~ip~lla~~avh~~Li~~~~R~~~~lvvesg~~r~~Hh~a~l~GyGA~av 664 (1520)
T 1ofd_A 585 KTAIATVQAGAEILVLTDRPNGAILTENQSFIPPLLAVGAVHHHLIRAGLRLKASLIVDTAQCWSTHHFACLVGYGASAI 664 (1520)
T ss_dssp HHHHHHHHTTCSEEEEESSGGGCCCCTTEEECCHHHHHHHHHHHHHHTTCGGGCEEEEECSSCCSHHHHHHHHHTTCSEE
T ss_pred HHHHHHHHCCCcEEEEcCCCCcCCCCCCccCcCHHHHHHHHHHHHHhcCCcccccEEEEeCCcChHHHHHHHHHcchhhh
Confidence 45788999999999999865 1 11121 23444444444333 234677777 789999999999999999999
Q ss_pred EEchHH--HHHh---------hhcC-------hHHHHHHHHHHHHHHHHHHHHhCCCCHhhhccccee
Q 019244 281 FIGRPV--VYSL---------AAEG-------EKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIV 330 (344)
Q Consensus 281 ~ig~~~--l~~~---------~~~G-------~~~v~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l~ 330 (344)
.=--++ +..+ ...| ++.+.++++.+.++|...|..+|.++++.-++..+.
T Consensus 665 ~Pyla~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ny~~a~~~Gl~KimskmGIst~~sY~gaqiF 732 (1520)
T 1ofd_A 665 CPYLALESVRQWWLDEKTQKLMENGRLDRIDLPTALKNYRQSVEAGLFKILSKMGISLLASYHGAQIF 732 (1520)
T ss_dssp ECHHHHHHHHHHHSCHHHHHHHTTSSCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCCBHHHHHTCCCE
T ss_pred cHHHHHHHHHHHHhcccchhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhccHhhhhhcCCceee
Confidence 633222 1222 1112 357899999999999999999999999988776554
|
| >3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=90.94 E-value=3.4 Score=35.28 Aligned_cols=88 Identities=17% Similarity=0.049 Sum_probs=55.9
Q ss_pred HHHHHHHHHh-cCCcEEEEee--cCHHH-HHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEe-cC
Q 019244 188 WKDVKWLQTI-TKLPILVKGV--LTAED-ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD-GG 262 (344)
Q Consensus 188 ~~~i~~i~~~-~~~PvivK~v--~~~~~-a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~-GG 262 (344)
.+.++++|+. .++|+.+-.. ...+. ++.+.++|+|+|.+.... ....+..+.+..+.. .++++.+ -+
T Consensus 41 ~~~i~~ir~~~~~~~i~~~~~~~~~~~~~~~~~~~~Gad~v~v~~~~------~~~~~~~~~~~~~~~--g~~~~v~~~~ 112 (211)
T 3f4w_A 41 VNAIKAIKEKYPHKEVLADAKIMDGGHFESQLLFDAGADYVTVLGVT------DVLTIQSCIRAAKEA--GKQVVVDMIC 112 (211)
T ss_dssp THHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHTTCSEEEEETTS------CHHHHHHHHHHHHHH--TCEEEEECTT
T ss_pred HHHHHHHHHhCCCCEEEEEEEeccchHHHHHHHHhcCCCEEEEeCCC------ChhHHHHHHHHHHHc--CCeEEEEecC
Confidence 4679999988 4889865433 34555 899999999999994321 112323222222222 4666653 44
Q ss_pred CCCHHH-HHHHHHcCCCEEEEc
Q 019244 263 VRRGTD-VFKALALGASGIFIG 283 (344)
Q Consensus 263 Ir~g~d-v~kalalGAd~V~ig 283 (344)
..+..+ +.++..+|+|.|.+.
T Consensus 113 ~~t~~~~~~~~~~~g~d~i~v~ 134 (211)
T 3f4w_A 113 VDDLPARVRLLEEAGADMLAVH 134 (211)
T ss_dssp CSSHHHHHHHHHHHTCCEEEEE
T ss_pred CCCHHHHHHHHHHcCCCEEEEc
Confidence 566644 667778999998875
|
| >3pm6_A Putative fructose-bisphosphate aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.20A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=90.93 E-value=3 Score=38.57 Aligned_cols=114 Identities=17% Similarity=0.125 Sum_probs=77.7
Q ss_pred cCHHHHHHHHHcCCcEEEEcc---CCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCH-HHHHHHHHcCCCEEEEc
Q 019244 208 LTAEDARIAVQAGAAGIIVSN---HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGIFIG 283 (344)
Q Consensus 208 ~~~~~a~~~~~~G~d~I~v~~---~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g-~dv~kalalGAd~V~ig 283 (344)
.+|++++...+.|+|.+-++. ||-+....-.-.++.|.+|.+.++.++|+..=||=..+ +++.+++.+|..=|-++
T Consensus 172 T~Peea~~Fv~TgvD~LAvaiGt~HG~Yk~~~p~Ld~~~L~~I~~~v~~~vpLVlHGgSG~p~e~i~~ai~~GV~KiNi~ 251 (306)
T 3pm6_A 172 TTPEESEEFVATGINWLAPAFGNVHGNYGPRGVQLDYERLQRINEAVGERVGLVLHGADPFTKEIFEKCIERGVAKVNVN 251 (306)
T ss_dssp CCHHHHHHHHTTTCSEECCCSSCCSSCCCTTCCCCCHHHHHHHHHHHTTTSEEEECSCTTCCHHHHHHHHHTTEEEEEES
T ss_pred CCHHHHHHHHHcCCCEEEEEcCccccCcCCCCCccCHHHHHHHHHHhCCCCCEEeeCCCCCCHHHHHHHHHcCCeEEEeC
Confidence 578999888899999988863 44331111112567899998887557999997765544 55789999999999999
Q ss_pred hHHHHHhhh--------cCh-HHHHHHHHHHHHHHHHHHHHhCCCCH
Q 019244 284 RPVVYSLAA--------EGE-KGVRRVLEMLREEFELAMALSGCRSL 321 (344)
Q Consensus 284 ~~~l~~~~~--------~G~-~~v~~~l~~l~~el~~~m~~~G~~~i 321 (344)
+-+..+... ... .-+....+.+++.++..|..+|+..-
T Consensus 252 Tdl~~a~~~~~r~~~~~~~~~~~~~~~~~a~~~~v~~~i~~fgs~gk 298 (306)
T 3pm6_A 252 RAVNNEYVKVMREKAGSLPITRLHEEVTNAMQAAVEKIMDMIDSTGK 298 (306)
T ss_dssp HHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHTTCTTG
T ss_pred hHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 977543211 011 11233345677788888999998643
|
| >2oz8_A MLL7089 protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.48A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=90.80 E-value=8.7 Score=36.38 Aligned_cols=87 Identities=9% Similarity=-0.031 Sum_probs=61.4
Q ss_pred cHHHHHHHHHhc--CCcEEEEee--cCHHHH----HHHHH--cCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCc
Q 019244 187 SWKDVKWLQTIT--KLPILVKGV--LTAEDA----RIAVQ--AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIP 256 (344)
Q Consensus 187 ~~~~i~~i~~~~--~~PvivK~v--~~~~~a----~~~~~--~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~ 256 (344)
..+.++.+|+.+ ++++.+..- .+.+++ +.+.+ .++++|-= ...+..++.+.++++.+. ++|
T Consensus 176 ~~e~v~avR~a~G~~~~l~vDan~~~~~~~a~~~~~~l~~~g~~i~~iEq--------P~~~~~~~~~~~l~~~~~-~iP 246 (389)
T 2oz8_A 176 DLRRLELLKTCVPAGSKVMIDPNEAWTSKEALTKLVAIREAGHDLLWVED--------PILRHDHDGLRTLRHAVT-WTQ 246 (389)
T ss_dssp HHHHHHHHHTTSCTTCEEEEECTTCBCHHHHHHHHHHHHHTTCCCSEEES--------CBCTTCHHHHHHHHHHCC-SSE
T ss_pred HHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCceEEeC--------CCCCcCHHHHHHHHhhCC-CCC
Confidence 345688888877 477777643 455554 45667 66666531 011235677777777652 699
Q ss_pred EEEecCCCCHHHHHHHHHcC-CCEEEEc
Q 019244 257 VFLDGGVRRGTDVFKALALG-ASGIFIG 283 (344)
Q Consensus 257 via~GGIr~g~dv~kalalG-Ad~V~ig 283 (344)
|++++.+ +..|+.+++..| +|.|++.
T Consensus 247 Ia~dE~~-~~~~~~~~i~~~~~d~v~ik 273 (389)
T 2oz8_A 247 INSGEYL-DLQGKRLLLEAHAADILNVH 273 (389)
T ss_dssp EEECTTC-CHHHHHHHHHTTCCSEEEEC
T ss_pred EEeCCCC-CHHHHHHHHHcCCCCEEEEC
Confidence 9999999 999999999988 7999996
|
| >3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=90.73 E-value=0.28 Score=44.36 Aligned_cols=39 Identities=31% Similarity=0.393 Sum_probs=32.9
Q ss_pred HHHHHHHHhcCCcEEEEee-cCHHHHHHHHHcCCcEEEEcc
Q 019244 189 KDVKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSN 228 (344)
Q Consensus 189 ~~i~~i~~~~~~PvivK~v-~~~~~a~~~~~~G~d~I~v~~ 228 (344)
+.++++|+.+++|+++... .++++++.+.+ ++|+++|.+
T Consensus 189 ~~v~~vr~~~~~Pv~vGfGIst~e~a~~~~~-~ADGVIVGS 228 (252)
T 3tha_A 189 DKVKEIRSFTNLPIFVGFGIQNNQDVKRMRK-VADGVIVGT 228 (252)
T ss_dssp HHHHHHHTTCCSCEEEESSCCSHHHHHHHTT-TSSEEEECH
T ss_pred HHHHHHHHhcCCcEEEEcCcCCHHHHHHHHh-cCCEEEECH
Confidence 4689999988999999875 68999998876 699999953
|
| >3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A | Back alignment and structure |
|---|
Probab=90.69 E-value=0.35 Score=43.03 Aligned_cols=41 Identities=24% Similarity=0.268 Sum_probs=36.4
Q ss_pred cHHHHHHHHHhc-CCcEEEEe-ecCHHHHHHHHHcCCcEEEEcc
Q 019244 187 SWKDVKWLQTIT-KLPILVKG-VLTAEDARIAVQAGAAGIIVSN 228 (344)
Q Consensus 187 ~~~~i~~i~~~~-~~PvivK~-v~~~~~a~~~~~~G~d~I~v~~ 228 (344)
+.+.++++++.+ ++|+++.+ +.++++++.+. .|||+|+|++
T Consensus 167 ~~~~i~~i~~~~~~~Pv~vGGGI~t~e~a~~~~-~gAD~VVVGS 209 (228)
T 3vzx_A 167 DIEAVKKTKAVLETSTLFYGGGIKDAETAKQYA-EHADVIVVGN 209 (228)
T ss_dssp CHHHHHHHHHHCSSSEEEEESSCCSHHHHHHHH-TTCSEEEECT
T ss_pred CHHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHH-hCCCEEEECh
Confidence 678899999999 79999987 57999999988 7999999954
|
| >2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A | Back alignment and structure |
|---|
Probab=90.69 E-value=2.6 Score=39.76 Aligned_cols=83 Identities=10% Similarity=0.070 Sum_probs=61.5
Q ss_pred HHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHH
Q 019244 189 KDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 268 (344)
Q Consensus 189 ~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~d 268 (344)
+.+.+.++..+++++ -.+.+.+.+..+.+.|+|.+.|... -...+..|..+.+ ...|||.+-|..|-++
T Consensus 94 ~~L~~~~~~~Gi~~~-st~~d~~svd~l~~~~v~~~KI~S~-------~~~n~~LL~~va~---~gkPviLstGmat~~E 162 (349)
T 2wqp_A 94 IKLKEYVESKGMIFI-STLFSRAAALRLQRMDIPAYKIGSG-------ECNNYPLIKLVAS---FGKPIILSTGMNSIES 162 (349)
T ss_dssp HHHHHHHHHTTCEEE-EEECSHHHHHHHHHHTCSCEEECGG-------GTTCHHHHHHHHT---TCSCEEEECTTCCHHH
T ss_pred HHHHHHHHHhCCeEE-EeeCCHHHHHHHHhcCCCEEEECcc-------cccCHHHHHHHHh---cCCeEEEECCCCCHHH
Confidence 356666667788876 3578899999999999999999531 1234566776654 3789999999999999
Q ss_pred HHHHHH----cCCCEEEE
Q 019244 269 VFKALA----LGASGIFI 282 (344)
Q Consensus 269 v~kala----lGAd~V~i 282 (344)
+..|.. .|.+.+.+
T Consensus 163 i~~Ave~i~~~G~~iiLl 180 (349)
T 2wqp_A 163 IKKSVEIIREAGVPYALL 180 (349)
T ss_dssp HHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 887764 47766554
|
| >2nql_A AGR_PAT_674P, isomerase/lactonizing enzyme; enolase, structural genomics, protein structure initiative, nysgxrc; 1.80A {Agrobacterium tumefaciens str} PDB: 4dn1_A | Back alignment and structure |
|---|
Probab=90.68 E-value=0.6 Score=44.52 Aligned_cols=91 Identities=15% Similarity=0.016 Sum_probs=67.7
Q ss_pred CCCcHHHHHHHHHhc--CCcEEEEee--cCHHHH----HHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCC
Q 019244 184 RSLSWKDVKWLQTIT--KLPILVKGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRI 255 (344)
Q Consensus 184 ~~~~~~~i~~i~~~~--~~PvivK~v--~~~~~a----~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~ 255 (344)
..+ .+.++.+|+.+ ++|+.++.- .+.+++ +.+.+.|+++|--- ..+..++.+.++++.+ ++
T Consensus 192 ~~~-~e~v~avr~a~g~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iEqP--------~~~~d~~~~~~l~~~~--~i 260 (388)
T 2nql_A 192 DGP-AAEIANLRQVLGPQAKIAADMHWNQTPERALELIAEMQPFDPWFAEAP--------VWTEDIAGLEKVSKNT--DV 260 (388)
T ss_dssp TCH-HHHHHHHHHHHCTTSEEEEECCSCSCHHHHHHHHHHHGGGCCSCEECC--------SCTTCHHHHHHHHTSC--CS
T ss_pred hHH-HHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHhhcCCCEEECC--------CChhhHHHHHHHHhhC--CC
Confidence 344 67799999987 588998853 466554 55667888887421 1234567777777655 79
Q ss_pred cEEEecCCCCHHHHHHHHHcC-CCEEEEchH
Q 019244 256 PVFLDGGVRRGTDVFKALALG-ASGIFIGRP 285 (344)
Q Consensus 256 ~via~GGIr~g~dv~kalalG-Ad~V~ig~~ 285 (344)
||++++.+.+..|+.+++..| +|.|++-..
T Consensus 261 PI~~dE~~~~~~~~~~~i~~~~~d~v~ik~~ 291 (388)
T 2nql_A 261 PIAVGEEWRTHWDMRARIERCRIAIVQPEMG 291 (388)
T ss_dssp CEEECTTCCSHHHHHHHHTTSCCSEECCCHH
T ss_pred CEEEeCCcCCHHHHHHHHHcCCCCEEEecCC
Confidence 999999999999999999987 899988543
|
| >2p8b_A Mandelate racemase/muconate lactonizing enzyme family protein; enolase superfamily, prediction of function; HET: NSK; 1.70A {Bacillus cereus atcc 14579} PDB: 2p88_A* 2p8c_A* | Back alignment and structure |
|---|
Probab=90.55 E-value=1.1 Score=42.22 Aligned_cols=88 Identities=15% Similarity=0.169 Sum_probs=61.8
Q ss_pred HHHHHHHHHhc--CCcEEEEee--cCHHHHH-H----HHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEE
Q 019244 188 WKDVKWLQTIT--KLPILVKGV--LTAEDAR-I----AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 258 (344)
Q Consensus 188 ~~~i~~i~~~~--~~PvivK~v--~~~~~a~-~----~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~vi 258 (344)
.+.++.+|+.+ ++|+.+..- .+.+++. . +.+.|+++|-= ...+..++.+.++++.. ++||+
T Consensus 172 ~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~~l~~~~i~~iEq--------P~~~~d~~~~~~l~~~~--~iPI~ 241 (369)
T 2p8b_A 172 VKRIEAVRERVGNDIAIRVDVNQGWKNSANTLTALRSLGHLNIDWIEQ--------PVIADDIDAMAHIRSKT--DLPLM 241 (369)
T ss_dssp HHHHHHHHHHHCTTSEEEEECTTTTBSHHHHHHHHHTSTTSCCSCEEC--------CBCTTCHHHHHHHHHTC--CSCEE
T ss_pred HHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEC--------CCCcccHHHHHHHHHhC--CCCEE
Confidence 45678888877 477777743 3445554 3 33556666631 11233567777887765 79999
Q ss_pred EecCCCCHHHHHHHHHcC-CCEEEEchH
Q 019244 259 LDGGVRRGTDVFKALALG-ASGIFIGRP 285 (344)
Q Consensus 259 a~GGIr~g~dv~kalalG-Ad~V~ig~~ 285 (344)
+++.+.+..++.+++..| +|.|++-..
T Consensus 242 ~dE~~~~~~~~~~~i~~~~~d~v~ik~~ 269 (369)
T 2p8b_A 242 IDEGLKSSREMRQIIKLEAADKVNIKLM 269 (369)
T ss_dssp ESTTCCSHHHHHHHHHHTCCSEEEECHH
T ss_pred eCCCCCCHHHHHHHHHhCCCCEEEeecc
Confidence 999999999999999987 899998653
|
| >3jva_A Dipeptide epimerase; enolase superfamily, isomerase; 1.70A {Enterococcus faecalis V583} PDB: 3jw7_A* 3jzu_A* 3k1g_A* 3kum_A* | Back alignment and structure |
|---|
Probab=90.51 E-value=2.4 Score=39.81 Aligned_cols=88 Identities=14% Similarity=0.084 Sum_probs=62.6
Q ss_pred HHHHHHHHHhc--CCcEEEEee--cCHHHHH----HHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEE
Q 019244 188 WKDVKWLQTIT--KLPILVKGV--LTAEDAR----IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 259 (344)
Q Consensus 188 ~~~i~~i~~~~--~~PvivK~v--~~~~~a~----~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via 259 (344)
.+.++.+|+.+ ++++.+..- .+.+++. .+.+.|+++|.= ...+..++.+.++++.. ++||++
T Consensus 170 ~~~v~avR~a~g~~~~l~vDan~~~~~~~a~~~~~~L~~~~i~~iEq--------P~~~~d~~~~~~l~~~~--~iPIa~ 239 (354)
T 3jva_A 170 IARVKAIREAVGFDIKLRLDANQAWTPKDAVKAIQALADYQIELVEQ--------PVKRRDLEGLKYVTSQV--NTTIMA 239 (354)
T ss_dssp HHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHTTTSCEEEEEC--------CSCTTCHHHHHHHHHHC--SSEEEE
T ss_pred HHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCEEEC--------CCChhhHHHHHHHHHhC--CCCEEE
Confidence 45688888877 477777653 4666653 444566666641 11123567777787766 799999
Q ss_pred ecCCCCHHHHHHHHHcC-CCEEEEchH
Q 019244 260 DGGVRRGTDVFKALALG-ASGIFIGRP 285 (344)
Q Consensus 260 ~GGIr~g~dv~kalalG-Ad~V~ig~~ 285 (344)
++.+.+..|+.+++..| +|.|++--.
T Consensus 240 dE~~~~~~~~~~~l~~~~~d~v~~k~~ 266 (354)
T 3jva_A 240 DESCFDAQDALELVKKGTVDVINIKLM 266 (354)
T ss_dssp STTCCSHHHHHHHHHHTCCSEEEECHH
T ss_pred cCCcCCHHHHHHHHHcCCCCEEEECch
Confidence 99999999999999986 799988743
|
| >2hzg_A Mandelate racemase/muconate lactonizing enzyme/EN superfamily; structural genomics, predicted mandelate racemase, PSI; 2.02A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=90.35 E-value=1.3 Score=42.39 Aligned_cols=89 Identities=10% Similarity=-0.013 Sum_probs=67.4
Q ss_pred cHHHHHHHHHhc--CCcEEEEee--c--CHHH----HHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHH-HccCCC
Q 019244 187 SWKDVKWLQTIT--KLPILVKGV--L--TAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVK-ATQGRI 255 (344)
Q Consensus 187 ~~~~i~~i~~~~--~~PvivK~v--~--~~~~----a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~-~~~~~~ 255 (344)
..+.++.+|+.+ ++++.++.- . +.++ ++.+.+.|+++|--- ..+..++.+.++++ .. ++
T Consensus 179 ~~e~v~avr~a~G~d~~l~vDan~~~~~~~~~a~~~~~~l~~~~i~~iEqP--------~~~~d~~~~~~l~~~~~--~i 248 (401)
T 2hzg_A 179 DADQIMAAREGLGPDGDLMVDVGQIFGEDVEAAAARLPTLDAAGVLWLEEP--------FDAGALAAHAALAGRGA--RV 248 (401)
T ss_dssp HHHHHHHHHHHHCSSSEEEEECTTTTTTCHHHHHTTHHHHHHTTCSEEECC--------SCTTCHHHHHHHHTTCC--SS
T ss_pred HHHHHHHHHHHhCCCCeEEEECCCCCCCCHHHHHHHHHHHHhcCCCEEECC--------CCccCHHHHHHHHhhCC--CC
Confidence 446788999887 588988853 5 7766 456778899988421 12345677777766 44 79
Q ss_pred cEEEecCCCCHHHHHHHHHcC-CCEEEEchH
Q 019244 256 PVFLDGGVRRGTDVFKALALG-ASGIFIGRP 285 (344)
Q Consensus 256 ~via~GGIr~g~dv~kalalG-Ad~V~ig~~ 285 (344)
||++++.+.+..|+.+++..| +|.|++-..
T Consensus 249 PI~~dE~~~~~~~~~~~i~~~~~d~v~ik~~ 279 (401)
T 2hzg_A 249 RIAGGEAAHNFHMAQHLMDYGRIGFIQIDCG 279 (401)
T ss_dssp EEEECTTCSSHHHHHHHHHHSCCSEEEECHH
T ss_pred CEEecCCcCCHHHHHHHHHCCCCCEEEeCcc
Confidence 999999999999999999987 899998643
|
| >3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ... | Back alignment and structure |
|---|
Probab=90.08 E-value=3.3 Score=39.24 Aligned_cols=41 Identities=27% Similarity=0.406 Sum_probs=35.7
Q ss_pred cHHHHHHHHHhc--CCcEEEE-eecCHHHHHHHHHcCCcEEEEc
Q 019244 187 SWKDVKWLQTIT--KLPILVK-GVLTAEDARIAVQAGAAGIIVS 227 (344)
Q Consensus 187 ~~~~i~~i~~~~--~~PvivK-~v~~~~~a~~~~~~G~d~I~v~ 227 (344)
.|+.|.++++.+ ++||+.= ++.+.+++..++++|||+|.+.
T Consensus 284 a~~~v~~i~~~v~~~ipvI~~GGI~s~~da~~~l~~GAd~V~vg 327 (367)
T 3zwt_A 284 STQTIREMYALTQGRVPIIGVGGVSSGQDALEKIRAGASLVQLY 327 (367)
T ss_dssp HHHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHHHHTCSEEEES
T ss_pred HHHHHHHHHHHcCCCceEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 578899999998 7998764 4689999999999999999985
|
| >2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=90.06 E-value=0.91 Score=41.14 Aligned_cols=42 Identities=12% Similarity=0.218 Sum_probs=35.5
Q ss_pred cHHHHHHHHH-hcC-CcEEEEe-ecCHHHHHHHHHcCCcEEEEcc
Q 019244 187 SWKDVKWLQT-ITK-LPILVKG-VLTAEDARIAVQAGAAGIIVSN 228 (344)
Q Consensus 187 ~~~~i~~i~~-~~~-~PvivK~-v~~~~~a~~~~~~G~d~I~v~~ 228 (344)
+.+.++.+++ ..+ +|||+-+ +.+++++..+.+.|+|+|.|.+
T Consensus 164 ~~~~L~~i~~~~~~~vPVI~~GGI~tpsDAa~AmeLGAdgVlVgS 208 (268)
T 2htm_A 164 TRALLELFAREKASLPPVVVDAGLGLPSHAAEVMELGLDAVLVNT 208 (268)
T ss_dssp THHHHHHHHHTTTTSSCBEEESCCCSHHHHHHHHHTTCCEEEESH
T ss_pred CHHHHHHHHHhcCCCCeEEEeCCCCCHHHHHHHHHcCCCEEEECh
Confidence 4566899988 667 9999865 5799999999999999999854
|
| >2og9_A Mandelate racemase/muconate lactonizing enzyme; NYSGXRC, protein structure initiative (PSI) II, PSI-2, 9382A mandelate racemase; 1.90A {Polaromonas SP} PDB: 3cb3_A* | Back alignment and structure |
|---|
Probab=89.99 E-value=1.2 Score=42.59 Aligned_cols=88 Identities=10% Similarity=-0.005 Sum_probs=66.1
Q ss_pred cHHHHHHHHHhc--CCcEEEEee--cCHHHH----HHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEE
Q 019244 187 SWKDVKWLQTIT--KLPILVKGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 258 (344)
Q Consensus 187 ~~~~i~~i~~~~--~~PvivK~v--~~~~~a----~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~vi 258 (344)
..+.++.+|+.+ ++++.+..- .+.+++ +.+.+.|+++|--- ..+..++.+.++++.+ ++||+
T Consensus 193 ~~e~v~avR~avg~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iE~P--------~~~~~~~~~~~l~~~~--~iPIa 262 (393)
T 2og9_A 193 DIARVTAVRKHLGDAVPLMVDANQQWDRPTAQRMCRIFEPFNLVWIEEP--------LDAYDHEGHAALALQF--DTPIA 262 (393)
T ss_dssp HHHHHHHHHHHHCTTSCEEEECTTCCCHHHHHHHHHHHGGGCCSCEECC--------SCTTCHHHHHHHHHHC--SSCEE
T ss_pred HHHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEECC--------CCcccHHHHHHHHHhC--CCCEE
Confidence 456789999987 588988743 466664 45667788887421 1123567777887776 79999
Q ss_pred EecCCCCHHHHHHHHHcC-CCEEEEch
Q 019244 259 LDGGVRRGTDVFKALALG-ASGIFIGR 284 (344)
Q Consensus 259 a~GGIr~g~dv~kalalG-Ad~V~ig~ 284 (344)
+++.+.+..|+.+++..| +|.|++--
T Consensus 263 ~dE~~~~~~~~~~~i~~~~~d~v~ik~ 289 (393)
T 2og9_A 263 TGEMLTSAAEHGDLIRHRAADYLMPDA 289 (393)
T ss_dssp ECTTCCSHHHHHHHHHTTCCSEECCCH
T ss_pred eCCCcCCHHHHHHHHHCCCCCEEeeCc
Confidence 999999999999999988 79998854
|
| >2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A | Back alignment and structure |
|---|
Probab=89.99 E-value=1.8 Score=39.43 Aligned_cols=89 Identities=12% Similarity=0.148 Sum_probs=53.3
Q ss_pred HHHHHHcCCcEEEEccCCCCCCCCch-hhHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHcCCCEEEEchHHH
Q 019244 213 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 287 (344)
Q Consensus 213 a~~~~~~G~d~I~v~~~gG~~~~~g~-~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~k----alalGAd~V~ig~~~l 287 (344)
++.+++.|+++|.+.|+-|-...-.. .-.+.+..+++.+.+ ||+--|=.+-.++++ |-.+|||++++-.|++
T Consensus 25 v~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~g---vi~Gvg~~~t~~ai~la~~A~~~Gadavlv~~P~y 101 (286)
T 2r91_A 25 VKNITSKGVDVVFVAGTTGLGPALSLQEKMELTDAATSAARR---VIVQVASLNADEAIALAKYAESRGAEAVASLPPYY 101 (286)
T ss_dssp HHHHHHTTCCEEEETSTTTTGGGSCHHHHHHHHHHHHHHCSS---EEEECCCSSHHHHHHHHHHHHHTTCSEEEECCSCS
T ss_pred HHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCC---EEEeeCCCCHHHHHHHHHHHHhcCCCEEEEcCCcC
Confidence 45678899999999776443111111 123455555666543 555334334455443 3347999999999998
Q ss_pred HH-hhhcChHHHHHHHHHHHH
Q 019244 288 YS-LAAEGEKGVRRVLEMLRE 307 (344)
Q Consensus 288 ~~-~~~~G~~~v~~~l~~l~~ 307 (344)
+. . .++++.++++.+.+
T Consensus 102 ~~~~---s~~~l~~~f~~va~ 119 (286)
T 2r91_A 102 FPRL---SERQIAKYFRDLCS 119 (286)
T ss_dssp STTC---CHHHHHHHHHHHHH
T ss_pred CCCC---CHHHHHHHHHHHHH
Confidence 64 2 45666666655544
|
| >3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A | Back alignment and structure |
|---|
Probab=89.97 E-value=0.35 Score=43.21 Aligned_cols=41 Identities=17% Similarity=0.176 Sum_probs=36.3
Q ss_pred cHHHHHHHHHhc-CCcEEEEe-ecCHHHHHHHHHcCCcEEEEcc
Q 019244 187 SWKDVKWLQTIT-KLPILVKG-VLTAEDARIAVQAGAAGIIVSN 228 (344)
Q Consensus 187 ~~~~i~~i~~~~-~~PvivK~-v~~~~~a~~~~~~G~d~I~v~~ 228 (344)
..+.++++|+.+ ++|+++.+ +.++++++.+.+ |+|+++|++
T Consensus 173 ~~~~v~~ir~~~~~~pv~vGfGI~~~e~a~~~~~-gAD~VVVGS 215 (235)
T 3w01_A 173 DVSKVQAVSEHLTETQLFYGGGISSEQQATEMAA-IADTIIVGD 215 (235)
T ss_dssp CHHHHHHHHTTCSSSEEEEESCCCSHHHHHHHHT-TSSEEEECT
T ss_pred CHHHHHHHHHhcCCCCEEEECCcCCHHHHHHHHc-CCCEEEECC
Confidence 578899999998 89999987 479999999887 999999954
|
| >3q94_A Fructose-bisphosphate aldolase, class II; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel; HET: 13P; 2.30A {Bacillus anthracis} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=89.95 E-value=2.5 Score=38.76 Aligned_cols=45 Identities=20% Similarity=0.440 Sum_probs=39.1
Q ss_pred CCCcHHHHHHHHHhcCCcEEEEee--cCHHHHHHHHHcCCcEEEEcc
Q 019244 184 RSLSWKDVKWLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVSN 228 (344)
Q Consensus 184 ~~~~~~~i~~i~~~~~~PvivK~v--~~~~~a~~~~~~G~d~I~v~~ 228 (344)
+.++++.+++|++.+++|+++-+. .+.++.+++++.|+.-|-+++
T Consensus 191 p~Ld~~~L~~I~~~v~vpLVlHGgSG~~~e~i~~ai~~Gv~KiNi~T 237 (288)
T 3q94_A 191 PNLGFAEMEQVRDFTGVPLVLHGGTGIPTADIEKAISLGTSKINVNT 237 (288)
T ss_dssp CCCCHHHHHHHHHHHCSCEEECCCTTCCHHHHHHHHHTTEEEEEECH
T ss_pred CccCHHHHHHHHHhcCCCEEEeCCCCCCHHHHHHHHHcCCeEEEECh
Confidence 456889999999999999999886 577899999999999998853
|
| >1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=89.94 E-value=0.37 Score=43.19 Aligned_cols=41 Identities=24% Similarity=0.282 Sum_probs=36.5
Q ss_pred cHHHHHHHHHhc-CCcEEEEe-ecCHHHHHHHHHcCCcEEEEcc
Q 019244 187 SWKDVKWLQTIT-KLPILVKG-VLTAEDARIAVQAGAAGIIVSN 228 (344)
Q Consensus 187 ~~~~i~~i~~~~-~~PvivK~-v~~~~~a~~~~~~G~d~I~v~~ 228 (344)
..+.++++++.+ ++|+++.+ +.++++++.+.+ |||+|+|.+
T Consensus 169 ~~~~i~~i~~~~~~~Pv~vGgGI~t~e~a~~~~~-gAd~VIVGS 211 (240)
T 1viz_A 169 DIEAVKKTKAVLETSTLFYGGGIKDAETAKQYAE-HADVIVVGN 211 (240)
T ss_dssp CHHHHHHHHHTCSSSEEEEESSCCSHHHHHHHHT-TCSEEEECT
T ss_pred hHHHHHHHHHhcCCCCEEEEeccCCHHHHHHHHh-CCCEEEECh
Confidence 577899999999 99999987 578999999999 999999953
|
| >1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH; 1.45A {Escherichia coli} SCOP: c.1.10.2 | Back alignment and structure |
|---|
Probab=89.75 E-value=3.1 Score=38.11 Aligned_cols=46 Identities=13% Similarity=0.393 Sum_probs=39.7
Q ss_pred CCCCcHHHHHHHHHhcCCcEEEEee--cCHHHHHHHHHcCCcEEEEcc
Q 019244 183 DRSLSWKDVKWLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVSN 228 (344)
Q Consensus 183 ~~~~~~~~i~~i~~~~~~PvivK~v--~~~~~a~~~~~~G~d~I~v~~ 228 (344)
.+.++++.+++|++.+++|+++-+. .+.++.+++++.|+.-|-+++
T Consensus 186 ~p~Ld~~~L~~I~~~~~vpLVlHGgSG~~~e~i~~ai~~Gv~KiNi~T 233 (286)
T 1gvf_A 186 TPKIDFQRLAEIREVVDVPLVLHGASDVPDEFVRRTIELGVTKVNVAT 233 (286)
T ss_dssp CCCCCHHHHHHHHHHCCSCEEECCCTTCCHHHHHHHHHTTEEEEEECH
T ss_pred CCccCHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHCCCeEEEECh
Confidence 3567889999999999999999886 577899999999999998853
|
| >3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8} | Back alignment and structure |
|---|
Probab=89.62 E-value=1.6 Score=40.57 Aligned_cols=80 Identities=14% Similarity=0.145 Sum_probs=58.2
Q ss_pred HHHHHHHHhcCCcEEEEeec-C---HHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCC
Q 019244 189 KDVKWLQTITKLPILVKGVL-T---AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 264 (344)
Q Consensus 189 ~~i~~i~~~~~~PvivK~v~-~---~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr 264 (344)
+.++++++.++.|+.|.... + .+.++.+.+.|+|.|.+. +|. | ...+..+.+ ..++++. ++.
T Consensus 67 ~~i~~i~~~~~~p~gVnl~~~~~~~~~~~~~~~~~g~d~V~l~--~g~------p-~~~~~~l~~---~g~~v~~--~v~ 132 (326)
T 3bo9_A 67 KAISELRQKTDKPFGVNIILVSPWADDLVKVCIEEKVPVVTFG--AGN------P-TKYIRELKE---NGTKVIP--VVA 132 (326)
T ss_dssp HHHHHHHTTCSSCEEEEEETTSTTHHHHHHHHHHTTCSEEEEE--SSC------C-HHHHHHHHH---TTCEEEE--EES
T ss_pred HHHHHHHHhcCCCEEEEEeccCCCHHHHHHHHHHCCCCEEEEC--CCC------c-HHHHHHHHH---cCCcEEE--EcC
Confidence 35777887777899888764 2 366788899999999873 221 2 234444433 2567775 688
Q ss_pred CHHHHHHHHHcCCCEEEE
Q 019244 265 RGTDVFKALALGASGIFI 282 (344)
Q Consensus 265 ~g~dv~kalalGAd~V~i 282 (344)
+..++.++...|||++.+
T Consensus 133 s~~~a~~a~~~GaD~i~v 150 (326)
T 3bo9_A 133 SDSLARMVERAGADAVIA 150 (326)
T ss_dssp SHHHHHHHHHTTCSCEEE
T ss_pred CHHHHHHHHHcCCCEEEE
Confidence 999999999999999988
|
| >1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus} | Back alignment and structure |
|---|
Probab=89.48 E-value=1.8 Score=40.39 Aligned_cols=68 Identities=25% Similarity=0.239 Sum_probs=50.1
Q ss_pred HHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEE---ecCCCCHHHHHHHHHcCCCEEEEchHHH
Q 019244 211 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL---DGGVRRGTDVFKALALGASGIFIGRPVV 287 (344)
Q Consensus 211 ~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via---~GGIr~g~dv~kalalGAd~V~ig~~~l 287 (344)
+.++...++|||.|.+- ++++.+.+.++.+.+ ++|+++ .+|-....+..+.-.+|.+.|.++...+
T Consensus 193 ~Ra~Ay~eAGAd~i~~e---------~~~~~e~~~~i~~~l--~~P~lan~~~~g~~~~~~~~eL~~lGv~~v~~~~~~~ 261 (318)
T 1zlp_A 193 RRANLYKEAGADATFVE---------APANVDELKEVSAKT--KGLRIANMIEGGKTPLHTPEEFKEMGFHLIAHSLTAV 261 (318)
T ss_dssp HHHHHHHHTTCSEEEEC---------CCCSHHHHHHHHHHS--CSEEEEEECTTSSSCCCCHHHHHHHTCCEEEECSHHH
T ss_pred HHHHHHHHcCCCEEEEc---------CCCCHHHHHHHHHhc--CCCEEEEeccCCCCCCCCHHHHHHcCCeEEEEchHHH
Confidence 45788999999999983 346677888888888 689854 3433223345566679999999998887
Q ss_pred HH
Q 019244 288 YS 289 (344)
Q Consensus 288 ~~ 289 (344)
.+
T Consensus 262 ra 263 (318)
T 1zlp_A 262 YA 263 (318)
T ss_dssp HH
T ss_pred HH
Confidence 65
|
| >2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A* | Back alignment and structure |
|---|
Probab=89.41 E-value=2.1 Score=39.89 Aligned_cols=80 Identities=15% Similarity=0.214 Sum_probs=57.6
Q ss_pred HHHHHHHHhcCCcEEEEeec-C---HHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCC
Q 019244 189 KDVKWLQTITKLPILVKGVL-T---AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 264 (344)
Q Consensus 189 ~~i~~i~~~~~~PvivK~v~-~---~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr 264 (344)
+.++++++.++.|+.+.... + .+.++.+.++|+|+|.+.. |. + .+.+..+++ . .++|+.. +.
T Consensus 53 ~~i~~i~~~~~~p~gvnl~~~~~~~~~~~~~a~~~g~d~V~~~~--g~-----p--~~~i~~l~~-~--g~~v~~~--v~ 118 (332)
T 2z6i_A 53 ANIDKIKSLTDKPFGVNIMLLSPFVEDIVDLVIEEGVKVVTTGA--GN-----P--SKYMERFHE-A--GIIVIPV--VP 118 (332)
T ss_dssp HHHHHHHHHCCSCEEEEECTTSTTHHHHHHHHHHTTCSEEEECS--SC-----G--GGTHHHHHH-T--TCEEEEE--ES
T ss_pred HHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHHCCCCEEEECC--CC-----h--HHHHHHHHH-c--CCeEEEE--eC
Confidence 35777877778899888764 3 3558889999999998843 31 1 233444443 2 5788754 78
Q ss_pred CHHHHHHHHHcCCCEEEE
Q 019244 265 RGTDVFKALALGASGIFI 282 (344)
Q Consensus 265 ~g~dv~kalalGAd~V~i 282 (344)
+..++.++...|+|++.+
T Consensus 119 ~~~~a~~~~~~GaD~i~v 136 (332)
T 2z6i_A 119 SVALAKRMEKIGADAVIA 136 (332)
T ss_dssp SHHHHHHHHHTTCSCEEE
T ss_pred CHHHHHHHHHcCCCEEEE
Confidence 889988888999999998
|
| >2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A* | Back alignment and structure |
|---|
Probab=89.30 E-value=0.38 Score=42.99 Aligned_cols=40 Identities=25% Similarity=0.229 Sum_probs=36.2
Q ss_pred cHHHHHHHHHhc-CCcEEEEe-ecCHHHHHHHHHcCCcEEEEc
Q 019244 187 SWKDVKWLQTIT-KLPILVKG-VLTAEDARIAVQAGAAGIIVS 227 (344)
Q Consensus 187 ~~~~i~~i~~~~-~~PvivK~-v~~~~~a~~~~~~G~d~I~v~ 227 (344)
..+.++++++.+ ++|+++.+ +.++++++.+.+ |||+|+|.
T Consensus 177 ~~~~i~~i~~~~~~~Pv~vGgGI~s~e~a~~~~~-gAd~VIVG 218 (234)
T 2f6u_A 177 NPELVAEVKKVLDKARLFYGGGIDSREKAREMLR-YADTIIVG 218 (234)
T ss_dssp CHHHHHHHHHHCSSSEEEEESCCCSHHHHHHHHH-HSSEEEEC
T ss_pred hHHHHHHHHHhCCCCCEEEEecCCCHHHHHHHHh-CCCEEEEC
Confidence 578899999999 99999987 578999999999 99999995
|
| >3tkf_A Transaldolase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel/TIM barrel; HET: I22 EPE; 1.50A {Francisella tularensis subsp} PDB: 3te9_A* 3upb_A* 3tk7_A* 3tno_A* 4e0c_A 3igx_A | Back alignment and structure |
|---|
Probab=89.24 E-value=1.7 Score=40.85 Aligned_cols=101 Identities=14% Similarity=0.178 Sum_probs=67.5
Q ss_pred cHHHHHHHHHhc--CCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCC----------c----hhhHHHHHHHHHH
Q 019244 187 SWKDVKWLQTIT--KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDY----------V----PATIMALEEVVKA 250 (344)
Q Consensus 187 ~~~~i~~i~~~~--~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~----------g----~~~~~~l~~i~~~ 250 (344)
+|+-++.++... ++++-+=.+.|...+..+.++|+..|-.. -||-.|| + .+.+..+.++.+.
T Consensus 163 T~eGi~A~~~L~~eGI~vN~TliFS~~Qa~~aAeAGa~~ISPF--VGRidD~~~~~~~~~~~~~~~~~~Gv~~v~~i~~~ 240 (345)
T 3tkf_A 163 TWEGIKAAKLLQKEGINCNLTLIFDKAQAKACAEAGVYLVSPF--VGRITDWQMQQNNLKTFPAIADDDGVNSVKAIYKL 240 (345)
T ss_dssp SHHHHHHHHHHHHTTCCEEEEEECCHHHHHHHHHTTCSEEEEB--SHHHHHHHHHHTTCSSCCCGGGCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHHcCCcEEEee--cchHHHHhhhccccccccccccCCHHHHHHHHHHH
Confidence 676554444332 89998888999999999999999988663 2332211 1 1334444455443
Q ss_pred ---ccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhh
Q 019244 251 ---TQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAA 292 (344)
Q Consensus 251 ---~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~ 292 (344)
.+.+..|++ -.+|+..++.. .+|+|.+-|.-.++..+..
T Consensus 241 yk~~g~~T~Vl~-ASfRn~~~V~a--LaG~d~vTipp~lL~~L~~ 282 (345)
T 3tkf_A 241 YKSHGFKTIVMG-ASFRNVEQVIA--LAGCDALTISPVLLEELKN 282 (345)
T ss_dssp HHHHTCCSEEEE-BCCSSHHHHHT--TTTSSEEEECHHHHHHHHT
T ss_pred HHHcCCCCEEEe-CCCCCHHHHHH--HhCCCEEECCHHHHHHHHh
Confidence 333454554 56999999983 4699999888888876653
|
| >3q94_A Fructose-bisphosphate aldolase, class II; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel; HET: 13P; 2.30A {Bacillus anthracis} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=89.08 E-value=9.1 Score=35.02 Aligned_cols=107 Identities=19% Similarity=0.226 Sum_probs=73.6
Q ss_pred cCHHHHHHHH-HcCCcEEEEcc---CCCCCCCCchh--hHHHHHHHHHHccCCCcEEEecCCCCH-HHHHHHHHcCCCEE
Q 019244 208 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPA--TIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGI 280 (344)
Q Consensus 208 ~~~~~a~~~~-~~G~d~I~v~~---~gG~~~~~g~~--~~~~l~~i~~~~~~~~~via~GGIr~g-~dv~kalalGAd~V 280 (344)
.+|++|+... +.|+|.+-++- ||-+ .+.| .++.|.+|++.+ ++|+..=||=..+ +++.|++.+|..=|
T Consensus 159 T~Peea~~Fv~~TgvD~LAvaiGt~HG~Y---~~~p~Ld~~~L~~I~~~v--~vpLVlHGgSG~~~e~i~~ai~~Gv~Ki 233 (288)
T 3q94_A 159 ADPAECKHLVEATGIDCLAPALGSVHGPY---KGEPNLGFAEMEQVRDFT--GVPLVLHGGTGIPTADIEKAISLGTSKI 233 (288)
T ss_dssp CCHHHHHHHHHHHCCSEEEECSSCBSSCC---SSSCCCCHHHHHHHHHHH--CSCEEECCCTTCCHHHHHHHHHTTEEEE
T ss_pred CCHHHHHHHHHHHCCCEEEEEcCcccCCc---CCCCccCHHHHHHHHHhc--CCCEEEeCCCCCCHHHHHHHHHcCCeEE
Confidence 5688887765 69999999873 5543 2223 567899999888 6999997754444 56889999999999
Q ss_pred EEchHHHHHhhh-------cC-----h-HHHHHHHHHHHHHHHHHHHHhCCC
Q 019244 281 FIGRPVVYSLAA-------EG-----E-KGVRRVLEMLREEFELAMALSGCR 319 (344)
Q Consensus 281 ~ig~~~l~~~~~-------~G-----~-~~v~~~l~~l~~el~~~m~~~G~~ 319 (344)
-+++-+.++... .. + .-+....+.+++.++..|..+|+.
T Consensus 234 Ni~Tdl~~a~~~~~r~~~~~~~~~~dpr~~~~~~~~a~~~~v~~~~~~~gs~ 285 (288)
T 3q94_A 234 NVNTENQIEFTKAVREVLNKDQEVYDPRKFIGPGRDAIKATVIGKIREFGSN 285 (288)
T ss_dssp EECHHHHHHHHHHHHHHHHHCSSCCCTHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred EEChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999987654321 00 1 112333455677777788888764
|
| >3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A* 3und_A* | Back alignment and structure |
|---|
Probab=88.98 E-value=2.2 Score=39.16 Aligned_cols=128 Identities=20% Similarity=0.284 Sum_probs=71.4
Q ss_pred cHHHHHHHHHhcCCcEEEEeec--CHHH----HHHHHHcCCcEEEEccCCCCCCCCc--hhhHHHHHHHHHHccCCCcEE
Q 019244 187 SWKDVKWLQTITKLPILVKGVL--TAED----ARIAVQAGAAGIIVSNHGARQLDYV--PATIMALEEVVKATQGRIPVF 258 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v~--~~~~----a~~~~~~G~d~I~v~~~gG~~~~~g--~~~~~~l~~i~~~~~~~~~vi 258 (344)
+.+.++++.+ +++||++|..+ ++++ ++.+.+.|.+-|++.-.| ...... ...+..++.+++.. ..+||+
T Consensus 123 n~~LLr~va~-~gkPVilK~G~~~t~~ei~~ave~i~~~Gn~~i~L~erg-~~y~~~~~~vdl~~i~~lk~~~-~~~pV~ 199 (285)
T 3sz8_A 123 QTDLVVAIAK-AGKPVNVKKPQFMSPTQLKHVVSKCGEVGNDRVMLCERG-SSFGYDNLVVDMLGFRQMAETT-GGCPVI 199 (285)
T ss_dssp CHHHHHHHHH-TSSCEEEECCTTSCGGGTHHHHHHHHHTTCCCEEEEECC-EECSSSCEECCTTHHHHHHHHT-TSCCEE
T ss_pred CHHHHHHHHc-cCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeCC-CCCCCCcCccCHHHHHHHHHhC-CCCCEE
Confidence 4556777664 69999999874 5544 566778898877775322 211111 12345666666654 148999
Q ss_pred Ee---------------cCCCCH-H-HHHHHHHcCCCEEEEchHHHH--HhhhcChHH-HHHHHHHHHHHHHHHHHHhCC
Q 019244 259 LD---------------GGVRRG-T-DVFKALALGASGIFIGRPVVY--SLAAEGEKG-VRRVLEMLREEFELAMALSGC 318 (344)
Q Consensus 259 a~---------------GGIr~g-~-dv~kalalGAd~V~ig~~~l~--~~~~~G~~~-v~~~l~~l~~el~~~m~~~G~ 318 (344)
.| ||-|.- . =...|+++|||.++|-..+-- ++ ++|... --+-++.|.++++..-..+|.
T Consensus 200 ~D~sHs~q~p~~~~~~s~G~r~~v~~~a~AAvA~GA~gl~IE~H~~pd~al-~D~~~sl~p~el~~lv~~i~~i~~~lg~ 278 (285)
T 3sz8_A 200 FDVTHSLQCRDPLGDASGGRRRQVLDLARAGIAVGIAGLFLEAHPDPDRAR-CDGPSALPLHQLEGLLSQMKAIDDLVKR 278 (285)
T ss_dssp EETTTTCC---------------HHHHHHHHHHHCCSEEEEEEESCGGGCS-CSSCCCEEGGGHHHHHHHHHHHHHHHTT
T ss_pred EeCCCccccCCCcCCCCCCchhhHHHHHHHHHHhCCCEEEEEeccChhccC-CchhhccCHHHHHHHHHHHHHHHHHhCC
Confidence 85 333222 2 234688999999998775421 11 133210 001245566666666666664
|
| >3i4k_A Muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9450D, isomerase, PSI-2, protein structure initiative; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=88.97 E-value=2.7 Score=39.98 Aligned_cols=88 Identities=15% Similarity=0.139 Sum_probs=66.1
Q ss_pred cHHHHHHHHHhc--CCcEEEEee--cCHHH----HHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEE
Q 019244 187 SWKDVKWLQTIT--KLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 258 (344)
Q Consensus 187 ~~~~i~~i~~~~--~~PvivK~v--~~~~~----a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~vi 258 (344)
+.+.++.+|+.+ ++++.+..- .+.++ ++.+.+.|+++|.= ...+..++.+.++++.. .+||+
T Consensus 180 d~~~v~avR~a~g~~~~l~vDan~~~~~~~A~~~~~~l~~~~i~~iEq--------P~~~~d~~~~~~l~~~~--~iPIa 249 (383)
T 3i4k_A 180 DTRRVAELAREVGDRVSLRIDINARWDRRTALHYLPILAEAGVELFEQ--------PTPADDLETLREITRRT--NVSVM 249 (383)
T ss_dssp HHHHHHHHHHTTTTTSEEEEECTTCSCHHHHHHHHHHHHHTTCCEEES--------CSCTTCHHHHHHHHHHH--CCEEE
T ss_pred HHHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCCEEEC--------CCChhhHHHHHHHHhhC--CCCEE
Confidence 345688999987 478888753 45655 45677889988852 11123466777787766 79999
Q ss_pred EecCCCCHHHHHHHHHcC-CCEEEEch
Q 019244 259 LDGGVRRGTDVFKALALG-ASGIFIGR 284 (344)
Q Consensus 259 a~GGIr~g~dv~kalalG-Ad~V~ig~ 284 (344)
+++.+.+..|+.+++..| +|.|++--
T Consensus 250 ~dE~~~~~~~~~~~i~~~~~d~v~~k~ 276 (383)
T 3i4k_A 250 ADESVWTPAEALAVVKAQAADVIALKT 276 (383)
T ss_dssp ESTTCSSHHHHHHHHHHTCCSEEEECT
T ss_pred ecCccCCHHHHHHHHHcCCCCEEEEcc
Confidence 999999999999999987 79999864
|
| >3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=88.89 E-value=0.75 Score=41.19 Aligned_cols=78 Identities=17% Similarity=0.025 Sum_probs=51.6
Q ss_pred HHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHH
Q 019244 190 DVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDV 269 (344)
Q Consensus 190 ~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv 269 (344)
.+..+.+.+++|++|- +....+.+.|+|+|-+... +. + ..++++.++...-|-+ -+.|..++
T Consensus 87 ~l~~l~~~~~~~liIn-----d~~~lA~~~gAdGVHLg~~-----dl--~----~~~~r~~~~~~~~iG~--S~ht~~Ea 148 (243)
T 3o63_A 87 ILADAAHRYGALFAVN-----DRADIARAAGADVLHLGQR-----DL--P----VNVARQILAPDTLIGR--STHDPDQV 148 (243)
T ss_dssp HHHHHHHHTTCEEEEE-----SCHHHHHHHTCSEEEECTT-----SS--C----HHHHHHHSCTTCEEEE--EECSHHHH
T ss_pred HHHHHHHhhCCEEEEe-----CHHHHHHHhCCCEEEecCC-----cC--C----HHHHHHhhCCCCEEEE--eCCCHHHH
Confidence 4667777778998874 2234477889999987421 11 1 1233444432333333 37999999
Q ss_pred HHHHHcCCCEEEEchH
Q 019244 270 FKALALGASGIFIGRP 285 (344)
Q Consensus 270 ~kalalGAd~V~ig~~ 285 (344)
.++...|||.|++|..
T Consensus 149 ~~A~~~GaDyI~vgpv 164 (243)
T 3o63_A 149 AAAAAGDADYFCVGPC 164 (243)
T ss_dssp HHHHHSSCSEEEECCS
T ss_pred HHHhhCCCCEEEEcCc
Confidence 9999999999999863
|
| >3fs2_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, bruciellla melitensis, DAHP synthetase I, cytoplasm, lipopolysaccharide biosynthesis; HET: PG4; 1.85A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=88.79 E-value=1.4 Score=40.77 Aligned_cols=95 Identities=22% Similarity=0.263 Sum_probs=58.5
Q ss_pred cHHHHHHHHHhcCCcEEEEeec--CHHH----HHHHHHcCCcEEEEccCCCCCCCCch--hhHHHHHHHHHHccCCCcEE
Q 019244 187 SWKDVKWLQTITKLPILVKGVL--TAED----ARIAVQAGAAGIIVSNHGARQLDYVP--ATIMALEEVVKATQGRIPVF 258 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v~--~~~~----a~~~~~~G~d~I~v~~~gG~~~~~g~--~~~~~l~~i~~~~~~~~~vi 258 (344)
+.+.++++. .+++||++|..+ ++++ ++.+.+.|.+-|++.-.| ....... ..+..++.+++ . .+||+
T Consensus 144 n~~LLr~va-~~gkPVilK~Gms~t~~ei~~ave~i~~~Gn~~iiL~erg-~~y~~~~~~vdl~~i~~lk~-~--~~PV~ 218 (298)
T 3fs2_A 144 QTDLLIAAA-RTGRVVNVKKGQFLAPWDMKNVLAKITESGNPNVLATERG-VSFGYNTLVSDMRALPIMAG-L--GAPVI 218 (298)
T ss_dssp CHHHHHHHH-HTTSEEEEECCTTCCGGGHHHHHHHHHTTTCCCEEEEECC-EECSSSCEECCTTHHHHHHT-T--TSCEE
T ss_pred CHHHHHHHH-ccCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEECC-CCCCCCCCccCHHHHHHHHH-c--CCcEE
Confidence 455677766 469999999874 5544 455667888777775322 2111101 23456666665 4 79999
Q ss_pred Ee---------------cCCCCHHH--HHHHHHcCCCEEEEchHH
Q 019244 259 LD---------------GGVRRGTD--VFKALALGASGIFIGRPV 286 (344)
Q Consensus 259 a~---------------GGIr~g~d--v~kalalGAd~V~ig~~~ 286 (344)
.| +|-|.-.- ...|+++|||+++|-..+
T Consensus 219 ~D~sHsvq~p~~~~~~s~G~r~~v~~~a~AAvAlGAdGl~IE~H~ 263 (298)
T 3fs2_A 219 FDATHSVQQPGGQGGSTGGQREFVETLARAAVAVGVAGFFIETHE 263 (298)
T ss_dssp EEHHHHTCCCC--------CGGGHHHHHHHHHHHCCSEEEEEEES
T ss_pred EcCCCccccCCcccCCCCCchhhHHHHHHHHHHcCCCEEEEEecC
Confidence 95 44433222 346889999999987754
|
| >4dwd_A Mandelate racemase/muconate lactonizing enzyme, C domain protein; structural genomics, EFI, enzyme function initiative, metal protein; HET: MSE; 1.50A {Paracoccus denitrificans} PDB: 3n4e_A* | Back alignment and structure |
|---|
Probab=88.79 E-value=1.9 Score=41.19 Aligned_cols=88 Identities=11% Similarity=-0.013 Sum_probs=67.1
Q ss_pred cHHHHHHHHHhc--CCcEEEEee--cCHHHH----HHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEE
Q 019244 187 SWKDVKWLQTIT--KLPILVKGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 258 (344)
Q Consensus 187 ~~~~i~~i~~~~--~~PvivK~v--~~~~~a----~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~vi 258 (344)
+.+.++.+|+.+ ++++.+..- .+.++| +.+.+.|+++|--- ..+..++.+.++++.. .+||+
T Consensus 177 d~~~v~avR~a~g~~~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iEqP--------~~~~d~~~~~~l~~~~--~iPIa 246 (393)
T 4dwd_A 177 DIAKARAVRELLGPDAVIGFDANNGYSVGGAIRVGRALEDLGYSWFEEP--------VQHYHVGAMGEVAQRL--DITVS 246 (393)
T ss_dssp HHHHHHHHHHHHCTTCCEEEECTTCCCHHHHHHHHHHHHHTTCSEEECC--------SCTTCHHHHHHHHHHC--SSEEE
T ss_pred HHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhhCCCEEECC--------CCcccHHHHHHHHhhC--CCCEE
Confidence 345688999987 588988753 466654 56778899888521 1123567777887766 79999
Q ss_pred EecCCCCHHHHHHHHHcCCCEEEEch
Q 019244 259 LDGGVRRGTDVFKALALGASGIFIGR 284 (344)
Q Consensus 259 a~GGIr~g~dv~kalalGAd~V~ig~ 284 (344)
++..+.+..|+.+++..|+|.|++--
T Consensus 247 ~dE~~~~~~~~~~~i~~~~d~v~~k~ 272 (393)
T 4dwd_A 247 AGEQTYTLQALKDLILSGVRMVQPDI 272 (393)
T ss_dssp BCTTCCSHHHHHHHHHHTCCEECCCT
T ss_pred ecCCcCCHHHHHHHHHcCCCEEEeCc
Confidence 99999999999999999999998854
|
| >3m16_A Transaldolase; dimer, molecular replac swiss-model, structural genomics, PSI-2, protein structure initiative; 2.79A {Oleispira antarctica} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=88.33 E-value=2 Score=40.22 Aligned_cols=100 Identities=13% Similarity=0.211 Sum_probs=66.1
Q ss_pred cHHHHHHHHHh--cCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCC-------------chhhHHHHHHHHHH-
Q 019244 187 SWKDVKWLQTI--TKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDY-------------VPATIMALEEVVKA- 250 (344)
Q Consensus 187 ~~~~i~~i~~~--~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~-------------g~~~~~~l~~i~~~- 250 (344)
+|+-++.++.. -++++-+=.+.|...+..+.++|+..|-.. -||-.|| +-+.+..+.++.+.
T Consensus 144 T~eGl~A~~~L~~~GI~~N~TliFS~~Qa~aaA~AGa~~ISPF--VgRidd~~~~~~~~~~~~~~~~~Gv~~v~~i~~~y 221 (329)
T 3m16_A 144 TWEGIQAAKILEAEGIHCNLTLLFHFAQAQACAEAGTTLISPF--VGRILDWYKANSGQSEYSASEDPGVVSVTEIYNFY 221 (329)
T ss_dssp SHHHHHHHHHHHHTTCCEEEEEECSHHHHHHHHHTTCSEEEEB--HHHHHHHHHTTSSCCCCCTTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHHcCCcEEEee--hhHHHHHhhhcccccccccccCcHHHHHHHHHHHH
Confidence 67655444433 289998888999999999999999988663 1221111 12334444454443
Q ss_pred --ccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhh
Q 019244 251 --TQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 291 (344)
Q Consensus 251 --~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~ 291 (344)
.+.+.. +..-.+|+..++.. ..|+|.+-+.-.++..+.
T Consensus 222 ~~~g~~T~-v~~ASfRn~~~V~a--LaG~d~vTipp~~l~~l~ 261 (329)
T 3m16_A 222 KSHGFKTI-VMGASFRNTGEIEE--LAGCDRLTISPELLAQLE 261 (329)
T ss_dssp HHTTCCCE-EEEBCCSCHHHHHT--TTTSSEEEECHHHHHHHH
T ss_pred HHcCCCCE-EEeCCCCCHHHHHH--hhCCCEEECCHHHHHHHH
Confidence 333444 44456999999984 469999988888877664
|
| >1v5x_A PRA isomerase, phosphoribosylanthranilate isomerase; alpha-beta barrel, TRPF, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=88.12 E-value=0.58 Score=40.77 Aligned_cols=91 Identities=13% Similarity=0.111 Sum_probs=59.1
Q ss_pred CCCCcHHHHHHHHHhcCCcEEEEee-c-CHHHHHHHHHcCCcEEEEccC-CCC--CCCCchhhHHHHHHHHHHccCCCcE
Q 019244 183 DRSLSWKDVKWLQTITKLPILVKGV-L-TAEDARIAVQAGAAGIIVSNH-GAR--QLDYVPATIMALEEVVKATQGRIPV 257 (344)
Q Consensus 183 ~~~~~~~~i~~i~~~~~~PvivK~v-~-~~~~a~~~~~~G~d~I~v~~~-gG~--~~~~g~~~~~~l~~i~~~~~~~~~v 257 (344)
|++.+.+.++.++. ++|+| |-+ . +.++. .+.+..+|++.++.. ||+ .+||.. +.++.. .+.|+
T Consensus 82 HG~e~~~~~~~l~~--~~~vi-ka~~v~~~~~l-~~~~~~~d~~LlD~~~gGtG~~fdW~~-----l~~~~~---~~~p~ 149 (203)
T 1v5x_A 82 HGEEPPEWAEAVGR--FYPVI-KAFPLEGPARP-EWADYPAQALLLDGKRPGSGEAYPRAW-----AKPLLA---TGRRV 149 (203)
T ss_dssp CSCCCHHHHHHHTT--TSCEE-EEEECSSSCCG-GGGGSSCSEEEEECSSTTSCCCCCGGG-----GHHHHH---TTSCE
T ss_pred CCCCCHHHHHHhcc--CCCEE-EEEEcCChHhh-hhhhcCCCEEEEcCCCCCCCCccCHHH-----HHhhhc---cCCcE
Confidence 44455667777732 57876 443 2 22233 344444899999863 443 466642 333111 25799
Q ss_pred EEecCCCCHHHHHHHHHcCCCEEEEchHH
Q 019244 258 FLDGGVRRGTDVFKALALGASGIFIGRPV 286 (344)
Q Consensus 258 ia~GGIr~g~dv~kalalGAd~V~ig~~~ 286 (344)
+..||+. ++++.+++.+++.+|=+.+.+
T Consensus 150 ~LAGGL~-peNV~~ai~~~p~gVDvsSGv 177 (203)
T 1v5x_A 150 ILAGGIA-PENLEEVLALRPYALDLASGV 177 (203)
T ss_dssp EECSSCC-STTHHHHHHHCCSEEEESGGG
T ss_pred EEECCCC-HHHHHHHHhcCCCEEEeCCce
Confidence 9999995 889999997799999999876
|
| >3lye_A Oxaloacetate acetyl hydrolase; (alpha/beta)8 barrel; 1.30A {Cryphonectria parasitica} PDB: 3m0j_A* 3m0k_A | Back alignment and structure |
|---|
Probab=87.99 E-value=2.5 Score=39.19 Aligned_cols=68 Identities=19% Similarity=0.119 Sum_probs=45.7
Q ss_pred HHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEE---ecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 212 DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL---DGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 212 ~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via---~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
.++...++|+|.|.+- ++++.+.+.++.+.+. .+|+.+ .+|-.....+.+.-.+|.+.|..+...+.
T Consensus 183 Ra~ay~eAGAD~ifi~---------~~~~~~~~~~i~~~~~-~~Pv~~n~~~~g~~p~~t~~eL~~lGv~~v~~~~~~~r 252 (307)
T 3lye_A 183 RLRAARDEGADVGLLE---------GFRSKEQAAAAVAALA-PWPLLLNSVENGHSPLITVEEAKAMGFRIMIFSFATLA 252 (307)
T ss_dssp HHHHHHHTTCSEEEEC---------CCSCHHHHHHHHHHHT-TSCBEEEEETTSSSCCCCHHHHHHHTCSEEEEETTTHH
T ss_pred HHHHHHHCCCCEEEec---------CCCCHHHHHHHHHHcc-CCceeEEeecCCCCCCCCHHHHHHcCCeEEEEChHHHH
Confidence 3566789999999883 3456677778877774 477765 34422222344556689999988887765
Q ss_pred H
Q 019244 289 S 289 (344)
Q Consensus 289 ~ 289 (344)
+
T Consensus 253 a 253 (307)
T 3lye_A 253 P 253 (307)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3tml_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.90A {Burkholderia cenocepacia} PDB: 3t4c_A | Back alignment and structure |
|---|
Probab=87.97 E-value=1.2 Score=40.96 Aligned_cols=95 Identities=20% Similarity=0.233 Sum_probs=58.1
Q ss_pred cHHHHHHHHHhcCCcEEEEeec--CHHH----HHHHHHcCC------cEEEEccCCCCCCCCch--hhHHHHHHHHHHcc
Q 019244 187 SWKDVKWLQTITKLPILVKGVL--TAED----ARIAVQAGA------AGIIVSNHGARQLDYVP--ATIMALEEVVKATQ 252 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v~--~~~~----a~~~~~~G~------d~I~v~~~gG~~~~~g~--~~~~~l~~i~~~~~ 252 (344)
+.+.++++. .+++||++|..+ ++++ ++.+.+.|. +-|++. |-|....... ..+..++.+++ .
T Consensus 120 n~~LLr~~a-~~gkPVilK~G~~~t~~e~~~ave~i~~~Gn~~~~~~~~i~L~-erg~~y~~~~~~vdl~~i~~lk~-~- 195 (288)
T 3tml_A 120 QTDFIHACA-RSGKPVNIKKGQFLAPHDMKNVIDKARDAAREAGLSEDRFMAC-ERGVSFGYNNLVSDMRSLAIMRE-T- 195 (288)
T ss_dssp CHHHHHHHH-TSSSCEEEECCTTCCTTHHHHHHHHHHHHHHTTTCCSCCEEEE-ECCEECSSSCEECCHHHHHHGGG-G-
T ss_pred CHHHHHHHH-ccCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCccCCCCcEEEE-eCCCCCCCCcCcCCHHHHHHHHh-c-
Confidence 445577765 469999999874 5544 455666776 556654 2232221111 24666776655 4
Q ss_pred CCCcEEEe---------------cCCCCHH--HHHHHHHcCCCEEEEchHH
Q 019244 253 GRIPVFLD---------------GGVRRGT--DVFKALALGASGIFIGRPV 286 (344)
Q Consensus 253 ~~~~via~---------------GGIr~g~--dv~kalalGAd~V~ig~~~ 286 (344)
.+||+.| ||-|.-. =...|+++|||+++|-+.+
T Consensus 196 -~~pV~~D~sHs~q~p~~~~~~s~G~r~~v~~~a~AAvA~GadGl~iE~H~ 245 (288)
T 3tml_A 196 -NAPVVFDATHSVQLPGGQGTSSGGQREFVPVLARAAVATGVAGLFMETHP 245 (288)
T ss_dssp -SSCEEEEHHHHTCCCC--------CTTHHHHHHHHHHHHCCSEEEEEEES
T ss_pred -CCcEEEcCCcccccCCcccCCCCCchhhHHHHHHHHHHcCCCEEEEeecc
Confidence 6999985 4544332 2357889999999998754
|
| >2qdd_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.30A {Roseovarius nubinhibens} PDB: 3fvd_B | Back alignment and structure |
|---|
Probab=87.96 E-value=4.5 Score=38.14 Aligned_cols=86 Identities=17% Similarity=0.106 Sum_probs=60.7
Q ss_pred cHHHHHHHHHhc--CCcEEEEee--cCHHHHHHHHH---cCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEE
Q 019244 187 SWKDVKWLQTIT--KLPILVKGV--LTAEDARIAVQ---AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 259 (344)
Q Consensus 187 ~~~~i~~i~~~~--~~PvivK~v--~~~~~a~~~~~---~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via 259 (344)
..+.++.+|+.+ ++|+.++.- .+.+++....+ .|+ +|- +. -+ .++.+.++++.. ++||++
T Consensus 176 ~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~i-~iE-------qP--~~-d~~~~~~l~~~~--~iPI~~ 242 (378)
T 2qdd_A 176 DIARIEAISAGLPDGHRVTFDVNRAWTPAIAVEVLNSVRARD-WIE-------QP--CQ-TLDQCAHVARRV--ANPIML 242 (378)
T ss_dssp HHHHHHHHHHSCCTTCEEEEECTTCCCHHHHHHHHTSCCCCC-EEE-------CC--SS-SHHHHHHHHTTC--CSCEEE
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHhCCCc-EEE-------cC--CC-CHHHHHHHHHhC--CCCEEE
Confidence 345688888877 478887753 46676644332 455 442 10 11 667777777655 799999
Q ss_pred ecCCCCHHHHHHHHHcC-CCEEEEchH
Q 019244 260 DGGVRRGTDVFKALALG-ASGIFIGRP 285 (344)
Q Consensus 260 ~GGIr~g~dv~kalalG-Ad~V~ig~~ 285 (344)
++.+.+..|+.+++..| +|.|++-..
T Consensus 243 dE~~~~~~~~~~~i~~~~~d~v~ik~~ 269 (378)
T 2qdd_A 243 DECLHEFSDHLAAWSRGACEGVKIKPN 269 (378)
T ss_dssp CTTCCSHHHHHHHHHHTCCSEEEECHH
T ss_pred CCCcCCHHHHHHHHHhCCCCEEEeccc
Confidence 99999999999999877 899998654
|
| >3toy_A Mandelate racemase/muconate lactonizing enzyme FA protein; enolase, magnesium binding site, lyase; HET: P4C; 1.80A {Bradyrhizobium SP} PDB: 3tte_A* | Back alignment and structure |
|---|
Probab=87.93 E-value=5.5 Score=37.82 Aligned_cols=87 Identities=14% Similarity=0.066 Sum_probs=63.0
Q ss_pred HHHHHHHHHhc--CCcEEEEee--cCHHHH----HHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEE
Q 019244 188 WKDVKWLQTIT--KLPILVKGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 259 (344)
Q Consensus 188 ~~~i~~i~~~~--~~PvivK~v--~~~~~a----~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via 259 (344)
.+.++.+|+.+ ++++.+..- .++++| +.+.+.|+++|-= ...+..++.+.++++.. .+||.+
T Consensus 200 ~~~v~avR~a~G~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i~~iEe--------P~~~~d~~~~~~l~~~~--~iPIa~ 269 (383)
T 3toy_A 200 EAMIKGLRALLGPDIALMLDFNQSLDPAEATRRIARLADYDLTWIEE--------PVPQENLSGHAAVRERS--EIPIQA 269 (383)
T ss_dssp HHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHHGGGCCSEEEC--------CSCTTCHHHHHHHHHHC--SSCEEE
T ss_pred HHHHHHHHHHhCCCCeEEEeCCCCCCHHHHHHHHHHHHhhCCCEEEC--------CCCcchHHHHHHHHhhc--CCCEEe
Confidence 45688888876 477777643 456654 4566778887741 11123567777887766 799999
Q ss_pred ecCCCCHHHHHHHHHcC-CCEEEEch
Q 019244 260 DGGVRRGTDVFKALALG-ASGIFIGR 284 (344)
Q Consensus 260 ~GGIr~g~dv~kalalG-Ad~V~ig~ 284 (344)
+..+.+..|+.+++..| +|.|++--
T Consensus 270 dE~~~~~~~~~~~i~~~a~d~v~ik~ 295 (383)
T 3toy_A 270 GENWWFPRGFAEAIAAGASDFIMPDL 295 (383)
T ss_dssp CTTCCHHHHHHHHHHHTCCSEECCCT
T ss_pred CCCcCCHHHHHHHHHcCCCCEEEeCc
Confidence 99999999999999987 68887753
|
| >3cq0_A Putative transaldolase YGR043C; alpha/beta barrel, pentose shunt, transferase; HET: PG4; 1.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.89 E-value=3.4 Score=38.78 Aligned_cols=100 Identities=10% Similarity=0.155 Sum_probs=68.3
Q ss_pred cHHHHHHHHHh-c--CCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCC------------chhhHHHHHHHHH--
Q 019244 187 SWKDVKWLQTI-T--KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDY------------VPATIMALEEVVK-- 249 (344)
Q Consensus 187 ~~~~i~~i~~~-~--~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~------------g~~~~~~l~~i~~-- 249 (344)
+|+-|+.++.. . ++++-+=.+.|.+.+..+.++|+..|-.. -||-.|| +-+.+..+.++.+
T Consensus 148 T~eGi~A~~~L~~~eGI~vNvTLiFS~~Qa~aaa~AGa~~iSpF--VgRidd~~~~~~~~~~~~~~d~Gv~~v~~iy~~y 225 (339)
T 3cq0_A 148 TWEGIQAARELEVKHGIHCNMTLLFSFTQAVACAEANVTLISPF--VGRIMDFYKALSGKDYTAETDPGVLSVKKIYSYY 225 (339)
T ss_dssp SHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHTTCSEEEEB--SHHHHHHHHHC---CCCTTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCceeEeeeCCHHHHHHHHHcCCcEEEec--ccHHHHHhhhhcccccccccChHHHHHHHHHHHH
Confidence 67755555444 2 89998888999999999999999987653 3442222 1223344444443
Q ss_pred -HccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhh
Q 019244 250 -ATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 291 (344)
Q Consensus 250 -~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~ 291 (344)
....+..|++ -.+|+..+|.. ..|+|.+-+.-.++..+.
T Consensus 226 ~~~~~~T~v~~-AS~r~~~~V~~--LaG~d~vTipp~~l~~l~ 265 (339)
T 3cq0_A 226 KRHGYATEVMA-ASFRNLDELKA--LAGIDNMTLPLNLLEQLY 265 (339)
T ss_dssp HHHTCCCEEEE-BCCCSHHHHHH--HTTSSEEEEEHHHHHHHH
T ss_pred HHcCCCcEEEe-cCCCCHHHHHH--hhCCCEEECCHHHHHHHH
Confidence 3333444444 56999999997 579999988888887765
|
| >1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH; 1.45A {Escherichia coli} SCOP: c.1.10.2 | Back alignment and structure |
|---|
Probab=87.84 E-value=10 Score=34.64 Aligned_cols=107 Identities=18% Similarity=0.309 Sum_probs=74.2
Q ss_pred cCHHHHHHHH-HcCCcEEEEcc---CCCCCCCCchh--hHHHHHHHHHHccCCCcEEEecCCCC-HHHHHHHHHcCCCEE
Q 019244 208 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPA--TIMALEEVVKATQGRIPVFLDGGVRR-GTDVFKALALGASGI 280 (344)
Q Consensus 208 ~~~~~a~~~~-~~G~d~I~v~~---~gG~~~~~g~~--~~~~l~~i~~~~~~~~~via~GGIr~-g~dv~kalalGAd~V 280 (344)
.+|++|+... +.|+|.+-++- ||-+. +.| .++.|.+|++.+ ++|+..=||=.. -+++.|++.+|..=|
T Consensus 155 T~Peea~~Fv~~TgvD~LAvaiGt~HG~Y~---~~p~Ld~~~L~~I~~~~--~vpLVlHGgSG~~~e~i~~ai~~Gv~Ki 229 (286)
T 1gvf_A 155 TDPQEAKRFVELTGVDSLAVAIGTAHGLYS---KTPKIDFQRLAEIREVV--DVPLVLHGASDVPDEFVRRTIELGVTKV 229 (286)
T ss_dssp CCHHHHHHHHHHHCCSEEEECSSCCSSCCS---SCCCCCHHHHHHHHHHC--CSCEEECCCTTCCHHHHHHHHHTTEEEE
T ss_pred CCHHHHHHHHHHHCCCEEEeecCccccCcC---CCCccCHHHHHHHHHhc--CCCEEEECCCCCCHHHHHHHHHCCCeEE
Confidence 5788887766 79999999873 55332 333 467899999887 699999775443 456888999999999
Q ss_pred EEchHHHHHhhh-------cC-----hH-HHHHHHHHHHHHHHHHHHHhCCC
Q 019244 281 FIGRPVVYSLAA-------EG-----EK-GVRRVLEMLREEFELAMALSGCR 319 (344)
Q Consensus 281 ~ig~~~l~~~~~-------~G-----~~-~v~~~l~~l~~el~~~m~~~G~~ 319 (344)
-+++-+.++... .. +. -+....+.+++.++..|..+|+.
T Consensus 230 Ni~Tdl~~a~~~~~r~~~~~~~~~~dpr~~~~~~~~a~~~~v~~~~~~~gs~ 281 (286)
T 1gvf_A 230 NVATELKIAFAGAVKAWFAENPQGNDPRYYMRVGMDAMKEVVRNKINVCGSA 281 (286)
T ss_dssp EECHHHHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred EEChHHHHHHHHHHHHHHHhCcccCChHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999977554221 11 11 12333456777778888888764
|
| >3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7 | Back alignment and structure |
|---|
Probab=87.84 E-value=5.5 Score=36.67 Aligned_cols=92 Identities=21% Similarity=0.302 Sum_probs=61.1
Q ss_pred HHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCC-C-C---CCCCchhhHH----HHHHHHHHccCCCcEEEe
Q 019244 190 DVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHG-A-R---QLDYVPATIM----ALEEVVKATQGRIPVFLD 260 (344)
Q Consensus 190 ~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~g-G-~---~~~~g~~~~~----~l~~i~~~~~~~~~via~ 260 (344)
.++++.+. +-|+++=++.+.-.|+.+.++|+|+|.+++.+ + . ..|.++-+++ .+..|.+.. ++||++|
T Consensus 13 ~lr~l~~~-~~~i~~~~a~D~~sA~l~e~aGf~ai~vs~~s~a~~~~G~pD~~~vt~~em~~~~~~I~r~~--~~PviaD 89 (298)
T 3eoo_A 13 KFRAAVAA-EQPLQVVGAITAYAAKMAEAVGFKAVYLSGGGVAANSLGIPDLGISTMDDVLVDANRITNAT--NLPLLVD 89 (298)
T ss_dssp HHHHHHHH-SSSEEEEECSSHHHHHHHHHHTCSCEEECHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHC--CSCEEEE
T ss_pred HHHHHHhC-CCcEEEecCCCHHHHHHHHHcCCCEEEECcHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhhc--CCeEEEE
Confidence 45555443 56888888889999999999999999998621 1 0 1344444433 344444444 7999997
Q ss_pred c--CCCCHHHHH----HHHHcCCCEEEEch
Q 019244 261 G--GVRRGTDVF----KALALGASGIFIGR 284 (344)
Q Consensus 261 G--GIr~g~dv~----kalalGAd~V~ig~ 284 (344)
. |..++.++. +....||.+|-+--
T Consensus 90 ~d~Gyg~~~~v~~~v~~l~~aGaagv~iED 119 (298)
T 3eoo_A 90 IDTGWGGAFNIARTIRSFIKAGVGAVHLED 119 (298)
T ss_dssp CTTCSSSHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCeEEEECC
Confidence 6 554655554 34458999997753
|
| >2isw_A Putative fructose-1,6-bisphosphate aldolase; class II fructose-1,6-bisphosphate aldolase, glycolytic pathway, giardia lamblia, drug target; HET: PGH; 1.75A {Giardia intestinalis} PDB: 2isv_A* 3ohi_A* 3gay_A* 3gak_A* 3gb6_A* | Back alignment and structure |
|---|
Probab=87.81 E-value=10 Score=35.23 Aligned_cols=108 Identities=19% Similarity=0.271 Sum_probs=75.1
Q ss_pred cCHHHHHHHH-HcCCcEEEEcc---CCCCCCCCchhh----HHHHHHHHHHccCCCcEEEec------------------
Q 019244 208 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPAT----IMALEEVVKATQGRIPVFLDG------------------ 261 (344)
Q Consensus 208 ~~~~~a~~~~-~~G~d~I~v~~---~gG~~~~~g~~~----~~~l~~i~~~~~~~~~via~G------------------ 261 (344)
.+|++|.... +.|+|.+-++. ||-+... +.|. ++.|.+|.+.+ ++|+..=|
T Consensus 153 TdPeea~~Fv~~TgvD~LAvaiGt~HG~Yk~~-~~p~~~L~~~~L~~I~~~~--~vpLVlHGgSsvp~~~~~~~~~~gg~ 229 (323)
T 2isw_A 153 TEPQDAKKFVELTGVDALAVAIGTSHGAYKFK-SESDIRLAIDRVKTISDLT--GIPLVMHGSSSVPKDVKDMINKYGGK 229 (323)
T ss_dssp CCHHHHHHHHHHHCCSEEEECSSCCSSSBCCC-C----CCCCHHHHHHHHHH--CSCEEECSCCCCCHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHCCCEEEEecCccccccCCC-CCcccccCHHHHHHHHHHh--CCCeEEECCCCCCHHHHHHHHHhccc
Confidence 5788887765 79999999873 5543221 3344 57899998888 69999988
Q ss_pred -----CCCCHHHHHHHHHcCCCEEEEchHHHHHhhh-------cC-----h-HHHHHHHHHHHHHHHHHHHHhCCC
Q 019244 262 -----GVRRGTDVFKALALGASGIFIGRPVVYSLAA-------EG-----E-KGVRRVLEMLREEFELAMALSGCR 319 (344)
Q Consensus 262 -----GIr~g~dv~kalalGAd~V~ig~~~l~~~~~-------~G-----~-~~v~~~l~~l~~el~~~m~~~G~~ 319 (344)
|+. -+++.|++.+|..=|-+++-+-++... .. + .-+....+.+++.++..|..+|+.
T Consensus 230 ~~~~~Gvp-~e~i~~ai~~GV~KiNi~Tdl~~A~~~~vr~~~~~~~~~~dpr~~l~~~~~a~~~~v~~~~~~~gs~ 304 (323)
T 2isw_A 230 MPDAVGVP-IESIVHAIGEGVCKINVDSDSRMAMTGAIRKVFVEHPEKFDPRDYLGPGRDAITEMLIPKIKAFGSA 304 (323)
T ss_dssp CTTCBCCC-HHHHHHHHHTTEEEEEECHHHHHHHHHHHHHHHHHCTTCCCTHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred cccCCCCC-HHHHHHHHHCCCeEEEEChHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 544 578999999999999999977554321 11 1 113334466788888888888874
|
| >2ps2_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9440A, enolase superfamily, PSI-2; 1.80A {Aspergillus oryzae RIB40} | Back alignment and structure |
|---|
Probab=87.70 E-value=2.7 Score=39.61 Aligned_cols=85 Identities=21% Similarity=0.135 Sum_probs=59.4
Q ss_pred HHHHHHHHHhc--CCcEEEEee--cCHHHH----HHH-HHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEE
Q 019244 188 WKDVKWLQTIT--KLPILVKGV--LTAEDA----RIA-VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 258 (344)
Q Consensus 188 ~~~i~~i~~~~--~~PvivK~v--~~~~~a----~~~-~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~vi 258 (344)
.+.++.+|+.+ ++++.++.- .+.+++ +.+ .+.|+ +|-- . .+.++.+.++++.+ ++||+
T Consensus 177 ~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~~i-~iE~---P-------~~~~~~~~~l~~~~--~iPI~ 243 (371)
T 2ps2_A 177 AKRITAALANQQPDEFFIVDANGKLSVETALRLLRLLPHGLDF-ALEA---P-------CATWRECISLRRKT--DIPII 243 (371)
T ss_dssp HHHHHHHTTTCCTTCEEEEECTTBCCHHHHHHHHHHSCTTCCC-EEEC---C-------BSSHHHHHHHHTTC--CSCEE
T ss_pred HHHHHHHHHhcCCCCEEEEECCCCcCHHHHHHHHHHHHhhcCC-cCcC---C-------cCCHHHHHHHHhhC--CCCEE
Confidence 45677788776 477777643 456654 334 45566 5531 0 11566777776655 79999
Q ss_pred EecCCCCHHHHHHHHHcC-CCEEEEchH
Q 019244 259 LDGGVRRGTDVFKALALG-ASGIFIGRP 285 (344)
Q Consensus 259 a~GGIr~g~dv~kalalG-Ad~V~ig~~ 285 (344)
+++.+.+..|+.+++..| +|.|++--.
T Consensus 244 ~dE~~~~~~~~~~~i~~~~~d~v~ik~~ 271 (371)
T 2ps2_A 244 YDELATNEMSIVKILADDAAEGIDLKIS 271 (371)
T ss_dssp ESTTCCSHHHHHHHHHHTCCSEEEEEHH
T ss_pred eCCCcCCHHHHHHHHHhCCCCEEEechh
Confidence 999999999999999987 799998643
|
| >2rdx_A Mandelate racemase/muconate lactonizing enzyme, P; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.00A {Roseovarius nubinhibens} | Back alignment and structure |
|---|
Probab=87.53 E-value=1.9 Score=40.75 Aligned_cols=85 Identities=11% Similarity=-0.011 Sum_probs=63.1
Q ss_pred cHHHHHHHHHhc--CCcEEEEee--cCHHHH----HHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEE
Q 019244 187 SWKDVKWLQTIT--KLPILVKGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 258 (344)
Q Consensus 187 ~~~~i~~i~~~~--~~PvivK~v--~~~~~a----~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~vi 258 (344)
..+.++.+|+.+ ++|+.++.- .+.+++ +.+.+.|+ +|-- . + + .++.+.++++.+ ++||+
T Consensus 175 ~~e~v~avr~a~g~d~~l~vDan~~~~~~~a~~~~~~l~~~~i-~iE~---P---~---~-~~~~~~~l~~~~--~iPI~ 241 (379)
T 2rdx_A 175 DIDRIRACLPLLEPGEKAMADANQGWRVDNAIRLARATRDLDY-ILEQ---P---C---R-SYEECQQVRRVA--DQPMK 241 (379)
T ss_dssp HHHHHHHHGGGSCTTCEEEEECTTCSCHHHHHHHHHHTTTSCC-EEEC---C---S---S-SHHHHHHHHTTC--CSCEE
T ss_pred HHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhCCe-EEeC---C---c---C-CHHHHHHHHhhC--CCCEE
Confidence 346789999988 488988853 466665 44556677 6631 0 1 1 667777777655 79999
Q ss_pred EecCCCCHHHHHHHHHcC-CCEEEEch
Q 019244 259 LDGGVRRGTDVFKALALG-ASGIFIGR 284 (344)
Q Consensus 259 a~GGIr~g~dv~kalalG-Ad~V~ig~ 284 (344)
+++.+.+..|+.+++..| +|.|++-.
T Consensus 242 ~de~i~~~~~~~~~i~~~~~d~v~ik~ 268 (379)
T 2rdx_A 242 LDECVTGLHMAQRIVADRGAEICCLKI 268 (379)
T ss_dssp ECTTCCSHHHHHHHHHHTCCSEEEEET
T ss_pred EeCCcCCHHHHHHHHHcCCCCEEEEec
Confidence 999999999999999987 89999854
|
| >3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C* | Back alignment and structure |
|---|
Probab=87.47 E-value=2.5 Score=39.71 Aligned_cols=42 Identities=19% Similarity=0.317 Sum_probs=36.4
Q ss_pred CCcHHHHHHHHHhc-CCcEEEEe-ecCHHHHHHHHHcCCcEEEEc
Q 019244 185 SLSWKDVKWLQTIT-KLPILVKG-VLTAEDARIAVQAGAAGIIVS 227 (344)
Q Consensus 185 ~~~~~~i~~i~~~~-~~PvivK~-v~~~~~a~~~~~~G~d~I~v~ 227 (344)
...|+.++++++.+ ++||++-+ +.+++++..+++ |+|+|.++
T Consensus 182 ~~~~~~i~~ik~~~~~iPVianGgI~s~eda~~~l~-GaD~V~iG 225 (350)
T 3b0p_A 182 PLRHDWVHRLKGDFPQLTFVTNGGIRSLEEALFHLK-RVDGVMLG 225 (350)
T ss_dssp CCCHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHT-TSSEEEEC
T ss_pred cccHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHHh-CCCEEEEC
Confidence 35799999999998 89998866 479999999998 99999884
|
| >3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7 | Back alignment and structure |
|---|
Probab=87.34 E-value=3.5 Score=37.96 Aligned_cols=68 Identities=16% Similarity=0.074 Sum_probs=48.6
Q ss_pred HHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEe---cCCCCHHHHHHHHHcCCCEEEEchHHH
Q 019244 211 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD---GGVRRGTDVFKALALGASGIFIGRPVV 287 (344)
Q Consensus 211 ~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~---GGIr~g~dv~kalalGAd~V~ig~~~l 287 (344)
+.++...++|||.|.+- ++.+.+.+.++.+.+ ++|+++. +|-.....+.+.-.+|.+.|.++...+
T Consensus 175 ~Ra~ay~~AGAD~if~~---------~~~~~ee~~~~~~~~--~~Pl~~n~~~~g~tp~~~~~eL~~lGv~~v~~~~~~~ 243 (298)
T 3eoo_A 175 ERAIAYVEAGADMIFPE---------AMKTLDDYRRFKEAV--KVPILANLTEFGSTPLFTLDELKGANVDIALYCCGAY 243 (298)
T ss_dssp HHHHHHHHTTCSEEEEC---------CCCSHHHHHHHHHHH--CSCBEEECCTTSSSCCCCHHHHHHTTCCEEEECSHHH
T ss_pred HHHHhhHhcCCCEEEeC---------CCCCHHHHHHHHHHc--CCCeEEEeccCCCCCCCCHHHHHHcCCeEEEEchHHH
Confidence 34677889999999883 245677788888877 4888663 442222345566679999999998877
Q ss_pred HH
Q 019244 288 YS 289 (344)
Q Consensus 288 ~~ 289 (344)
.+
T Consensus 244 ra 245 (298)
T 3eoo_A 244 RA 245 (298)
T ss_dssp HH
T ss_pred HH
Confidence 75
|
| >2pp0_A L-talarate/galactarate dehydratase; enolase superfamily, LYA; 2.20A {Salmonella typhimurium} PDB: 2pp1_A* 2pp3_A* | Back alignment and structure |
|---|
Probab=87.30 E-value=2.2 Score=40.69 Aligned_cols=88 Identities=11% Similarity=0.021 Sum_probs=65.5
Q ss_pred cHHHHHHHHHhc--CCcEEEEee--cCHHHH----HHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEE
Q 019244 187 SWKDVKWLQTIT--KLPILVKGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 258 (344)
Q Consensus 187 ~~~~i~~i~~~~--~~PvivK~v--~~~~~a----~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~vi 258 (344)
..+.++.+|+.+ ++++.+..- .+.+++ +.+.+.|+++|--- ..+..++.+.++++.+ ++||+
T Consensus 206 d~e~v~avR~avG~d~~l~vDan~~~~~~~ai~~~~~l~~~~i~~iEqP--------~~~~d~~~~~~l~~~~--~iPIa 275 (398)
T 2pp0_A 206 DIRRLTAVREALGDEFPLMVDANQQWDRETAIRMGRKMEQFNLIWIEEP--------LDAYDIEGHAQLAAAL--DTPIA 275 (398)
T ss_dssp HHHHHHHHHHHHCSSSCEEEECTTCSCHHHHHHHHHHHGGGTCSCEECC--------SCTTCHHHHHHHHHHC--SSCEE
T ss_pred HHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHHHHcCCceeeCC--------CChhhHHHHHHHHhhC--CCCEE
Confidence 346789999987 588888753 466654 45667788877421 1123567778887776 79999
Q ss_pred EecCCCCHHHHHHHHHcC-CCEEEEch
Q 019244 259 LDGGVRRGTDVFKALALG-ASGIFIGR 284 (344)
Q Consensus 259 a~GGIr~g~dv~kalalG-Ad~V~ig~ 284 (344)
+++.+.+..|+.+++..| +|.|++--
T Consensus 276 ~dE~~~~~~~~~~~i~~~~~d~v~ik~ 302 (398)
T 2pp0_A 276 TGEMLTSFREHEQLILGNASDFVQPDA 302 (398)
T ss_dssp ECTTCCSHHHHHHHHHTTCCSEECCCH
T ss_pred ecCCcCCHHHHHHHHHcCCCCEEEeCc
Confidence 999999999999999987 79888753
|
| >2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=87.28 E-value=0.54 Score=41.59 Aligned_cols=70 Identities=16% Similarity=0.242 Sum_probs=52.4
Q ss_pred cCHHHHHHHHHcCCcEEEEccC---CCCCCCCchhhHHHHHHHH---HHccCCCcEEE-----ecCCCCH--------HH
Q 019244 208 LTAEDARIAVQAGAAGIIVSNH---GARQLDYVPATIMALEEVV---KATQGRIPVFL-----DGGVRRG--------TD 268 (344)
Q Consensus 208 ~~~~~a~~~~~~G~d~I~v~~~---gG~~~~~g~~~~~~l~~i~---~~~~~~~~via-----~GGIr~g--------~d 268 (344)
.+.+++..+.+.|||-|-+... ||. -|++..+..++ +.+ ++||.+ .|++... .|
T Consensus 9 ~s~~~a~~A~~~GAdRIELc~~L~~GGl-----TPS~g~i~~~~~~~~~~--~ipV~vMIRPR~GdF~Ys~~E~~~M~~D 81 (224)
T 2bdq_A 9 ENLTDLTRLDKAIISRVELCDNLAVGGT-----TPSYGVIKEANQYLHEK--GISVAVMIRPRGGNFVYNDLELRIMEED 81 (224)
T ss_dssp ETTTTGGGCCTTTCCEEEEEBCGGGTCB-----CCCHHHHHHHHHHHHHT--TCEEEEECCSSSSCSCCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCEEEEcCCcccCCc-----CCCHHHHHHHHHhhhhc--CCceEEEECCCCCCCcCCHHHHHHHHHH
Confidence 6889999999999999998753 453 35556666665 555 688877 4555554 37
Q ss_pred HHHHHHcCCCEEEEch
Q 019244 269 VFKALALGASGIFIGR 284 (344)
Q Consensus 269 v~kalalGAd~V~ig~ 284 (344)
+..+..+|||.|.+|-
T Consensus 82 i~~~~~~GadGvV~G~ 97 (224)
T 2bdq_A 82 ILRAVELESDALVLGI 97 (224)
T ss_dssp HHHHHHTTCSEEEECC
T ss_pred HHHHHHcCCCEEEEee
Confidence 7788889999999993
|
| >3ugv_A Enolase; enzyme function initiative, EFI, lyase; 2.30A {Alpha proteobacterium BAL199} | Back alignment and structure |
|---|
Probab=87.19 E-value=5.4 Score=37.97 Aligned_cols=89 Identities=12% Similarity=0.086 Sum_probs=64.0
Q ss_pred HHHHHHHHHhc--CCcEEEEee--cCHHHH----HHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEE
Q 019244 188 WKDVKWLQTIT--KLPILVKGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 259 (344)
Q Consensus 188 ~~~i~~i~~~~--~~PvivK~v--~~~~~a----~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via 259 (344)
.+.++.+|+.+ ++++.+..- .++++| +.+.+.|+++|-= ...+..++.+.++++.. .+||.+
T Consensus 206 ~~~v~avR~a~G~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i~~iEq--------P~~~~d~~~~~~l~~~~--~iPIa~ 275 (390)
T 3ugv_A 206 IETAEAVWDAVGRDTALMVDFNQGLDMAEAMHRTRQIDDLGLEWIEE--------PVVYDNFDGYAQLRHDL--KTPLMI 275 (390)
T ss_dssp HHHHHHHHHHHCTTSEEEEECTTCCCHHHHHHHHHHHTTSCCSEEEC--------CSCTTCHHHHHHHHHHC--SSCEEE
T ss_pred HHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEC--------CCCcccHHHHHHHHHhc--CCCEEe
Confidence 45688888887 477887753 466664 4455677777742 11123567777887766 799999
Q ss_pred ecCCCCHHHHHHHHHcC-CCEEEEchHH
Q 019244 260 DGGVRRGTDVFKALALG-ASGIFIGRPV 286 (344)
Q Consensus 260 ~GGIr~g~dv~kalalG-Ad~V~ig~~~ 286 (344)
+..+.+..|+.+++..| +|.|++--..
T Consensus 276 dE~~~~~~~~~~~i~~~a~d~v~ik~~~ 303 (390)
T 3ugv_A 276 GENFYGPREMHQALQAGACDLVMPDFMR 303 (390)
T ss_dssp CTTCCSHHHHHHHHHTTCCSEECCBHHH
T ss_pred CCCcCCHHHHHHHHHcCCCCEEEeCccc
Confidence 99999999999999987 7888776443
|
| >3stp_A Galactonate dehydratase, putative; PSI biology, structural genomics, NEW YORK structural genomi research consortium; 1.88A {Labrenzia aggregata iam 12614} PDB: 3sqs_A 3ssz_A | Back alignment and structure |
|---|
Probab=87.17 E-value=2.2 Score=41.07 Aligned_cols=90 Identities=7% Similarity=-0.024 Sum_probs=67.5
Q ss_pred cHHHHHHHHHhc--CCcEEEEee--cCHHHH----HHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEE
Q 019244 187 SWKDVKWLQTIT--KLPILVKGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 258 (344)
Q Consensus 187 ~~~~i~~i~~~~--~~PvivK~v--~~~~~a----~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~vi 258 (344)
+.+.++.+|+.+ ++++.+..- .++++| +.+.+.|+++|--- ..+..++.+.++++.. .+||+
T Consensus 216 die~v~avReavG~d~~L~vDaN~~~~~~~Ai~~~~~Le~~~i~~iEeP--------~~~~d~~~~~~l~~~~--~iPIa 285 (412)
T 3stp_A 216 NLKRVEAVREVIGYDNDLMLECYMGWNLDYAKRMLPKLAPYEPRWLEEP--------VIADDVAGYAELNAMN--IVPIS 285 (412)
T ss_dssp HHHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHGGGCCSEEECC--------SCTTCHHHHHHHHHTC--SSCEE
T ss_pred HHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCEEECC--------CCcccHHHHHHHHhCC--CCCEE
Confidence 445688999987 578888753 466664 45667888888521 1123567788887765 79999
Q ss_pred EecCCCCHHHHHHHHHcC-CCEEEEchHH
Q 019244 259 LDGGVRRGTDVFKALALG-ASGIFIGRPV 286 (344)
Q Consensus 259 a~GGIr~g~dv~kalalG-Ad~V~ig~~~ 286 (344)
+++.+.+..|+.+++..| +|.|++--..
T Consensus 286 ~dE~~~~~~~~~~li~~~a~D~v~ik~~~ 314 (412)
T 3stp_A 286 GGEHEFSVIGCAELINRKAVSVLQYDTNR 314 (412)
T ss_dssp ECTTCCSHHHHHHHHHTTCCSEECCCHHH
T ss_pred eCCCCCCHHHHHHHHHcCCCCEEecChhh
Confidence 999999999999999987 7999886544
|
| >1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A* | Back alignment and structure |
|---|
Probab=87.07 E-value=3.4 Score=37.82 Aligned_cols=89 Identities=19% Similarity=0.255 Sum_probs=51.1
Q ss_pred HHHHHHcCCcEEEEccCCCCCCCCch-hhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHH----HcCCCEEEEchHHH
Q 019244 213 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKAL----ALGASGIFIGRPVV 287 (344)
Q Consensus 213 a~~~~~~G~d~I~v~~~gG~~~~~g~-~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kal----alGAd~V~ig~~~l 287 (344)
++.+++.|+|+|.+.|+-|-...-.. .-.+.+..+++.+.+ ||+--|=.+-.++++.. .+|||++++-.|++
T Consensus 26 v~~li~~Gv~gl~~~GttGE~~~Ls~eEr~~v~~~~~~~~~g---viaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y 102 (293)
T 1w3i_A 26 AENLIRKGIDKLFVNGTTGLGPSLSPEEKLENLKAVYDVTNK---IIFQVGGLNLDDAIRLAKLSKDFDIVGIASYAPYY 102 (293)
T ss_dssp HHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHTTCSC---EEEECCCSCHHHHHHHHHHGGGSCCSEEEEECCCS
T ss_pred HHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHcCC---EEEecCCCCHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 34577899999999775442111111 122344444444433 55533444455555433 36999999999988
Q ss_pred HH-hhhcChHHHHHHHHHHHH
Q 019244 288 YS-LAAEGEKGVRRVLEMLRE 307 (344)
Q Consensus 288 ~~-~~~~G~~~v~~~l~~l~~ 307 (344)
+. . .++++.++++.+.+
T Consensus 103 ~~~~---s~~~l~~~f~~va~ 120 (293)
T 1w3i_A 103 YPRM---SEKHLVKYFKTLCE 120 (293)
T ss_dssp CSSC---CHHHHHHHHHHHHH
T ss_pred CCCC---CHHHHHHHHHHHHh
Confidence 64 2 45666666655543
|
| >2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A | Back alignment and structure |
|---|
Probab=87.06 E-value=2 Score=39.43 Aligned_cols=71 Identities=18% Similarity=0.207 Sum_probs=49.6
Q ss_pred HHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcC-CCEEEEchHHHHH
Q 019244 211 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVYS 289 (344)
Q Consensus 211 ~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalG-Ad~V~ig~~~l~~ 289 (344)
+.++...++|||.|.+-+ ++++.+.+.++.+.+..++|+++.-.-....++.+.-.+| .+.|.++...+.+
T Consensus 170 ~Ra~ay~eAGAd~i~~e~--------~~~~~~~~~~i~~~~~~~vP~i~n~~~~~~~~~~eL~~lG~v~~v~~~~~~~ra 241 (290)
T 2hjp_A 170 RRGQAYEEAGADAILIHS--------RQKTPDEILAFVKSWPGKVPLVLVPTAYPQLTEADIAALSKVGIVIYGNHAIRA 241 (290)
T ss_dssp HHHHHHHHTTCSEEEECC--------CCSSSHHHHHHHHHCCCSSCEEECGGGCTTSCHHHHHTCTTEEEEEECSHHHHH
T ss_pred HHHHHHHHcCCcEEEeCC--------CCCCHHHHHHHHHHcCCCCCEEEeccCCCCCCHHHHHhcCCeeEEEechHHHHH
Confidence 456788999999999832 1455567788888885559999852100122444556699 9999999887765
|
| >1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0 | Back alignment and structure |
|---|
Probab=87.03 E-value=5.1 Score=37.86 Aligned_cols=91 Identities=21% Similarity=0.210 Sum_probs=61.1
Q ss_pred HHHHHHhcCCcEEEEee--c----CHHHHHHHHHcCCcEEEEccC----CCCC------------------CC-------
Q 019244 191 VKWLQTITKLPILVKGV--L----TAEDARIAVQAGAAGIIVSNH----GARQ------------------LD------- 235 (344)
Q Consensus 191 i~~i~~~~~~PvivK~v--~----~~~~a~~~~~~G~d~I~v~~~----gG~~------------------~~------- 235 (344)
++++.+..+.|.++..- . +.+.++++.++|+++|.+.-. |++. .+
T Consensus 114 ieev~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~ai~it~d~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~ 193 (370)
T 1gox_A 114 VEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLKNFEGIDLGKMD 193 (370)
T ss_dssp HHHHHTTCCCCEEEEECCBSSHHHHHHHHHHHHHTTCCEEEEECSCSSCCCCHHHHHTTCCCCTTCCCGGGSSSCCC---
T ss_pred HHHHHhhcCCCceEEEecCCCchHHHHHHHHHHHCCCCEEEEeCCCCcccccHHHHHhccCCCcccchhhhhhhhhhccc
Confidence 45555554567888752 2 235678889999999988632 2110 00
Q ss_pred --Cc-------------hhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEch
Q 019244 236 --YV-------------PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 284 (344)
Q Consensus 236 --~g-------------~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~ 284 (344)
.+ ..+++.+.++++.. ++||+. +|+.+.+++.++..+|||+|.++.
T Consensus 194 ~~~g~~~~~~v~~~~~~~~~~~~i~~l~~~~--~~pv~v-K~~~~~e~a~~a~~~Gad~I~vs~ 254 (370)
T 1gox_A 194 KANDSGLSSYVAGQIDRSLSWKDVAWLQTIT--SLPILV-KGVITAEDARLAVQHGAAGIIVSN 254 (370)
T ss_dssp ------HHHHHHHTBCTTCCHHHHHHHHHHC--CSCEEE-ECCCSHHHHHHHHHTTCSEEEECC
T ss_pred cccCccHHHHHHhhcCccchHHHHHHHHHHh--CCCEEE-EecCCHHHHHHHHHcCCCEEEECC
Confidence 00 11345566676665 789986 778999999999999999999954
|
| >3q45_A Mandelate racemase/muconate lactonizing enzyme FA possible chloromuconate cycloisomerase...; (beta/alpha)8-barrel; 3.00A {Cytophaga hutchinsonii} PDB: 3q4d_A | Back alignment and structure |
|---|
Probab=86.98 E-value=4.8 Score=37.92 Aligned_cols=87 Identities=11% Similarity=0.155 Sum_probs=61.9
Q ss_pred HHHHHHHHHhc--CCcEEEEee--cCHHHH----HHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEE
Q 019244 188 WKDVKWLQTIT--KLPILVKGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 259 (344)
Q Consensus 188 ~~~i~~i~~~~--~~PvivK~v--~~~~~a----~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via 259 (344)
.+.++.+|+.+ ++++.+..- .+.++| +.+.+.|+++|-= ...+..++.+.++++.. .+||.+
T Consensus 171 ~~~v~avR~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i~~iEq--------P~~~~~~~~~~~l~~~~--~iPIa~ 240 (368)
T 3q45_A 171 VERIRMIREAAGDSITLRIDANQGWSVETAIETLTLLEPYNIQHCEE--------PVSRNLYTALPKIRQAC--RIPIMA 240 (368)
T ss_dssp HHHHHHHHHHHCSSSEEEEECTTCBCHHHHHHHHHHHGGGCCSCEEC--------CBCGGGGGGHHHHHHTC--SSCEEE
T ss_pred HHHHHHHHHHhCCCCeEEEECCCCCChHHHHHHHHHHhhcCCCEEEC--------CCChhHHHHHHHHHhhC--CCCEEE
Confidence 45688888887 477777642 456654 4556678877742 11123455667777655 799999
Q ss_pred ecCCCCHHHHHHHHHcC-CCEEEEch
Q 019244 260 DGGVRRGTDVFKALALG-ASGIFIGR 284 (344)
Q Consensus 260 ~GGIr~g~dv~kalalG-Ad~V~ig~ 284 (344)
+..+.+..|+.+++..| +|.|++--
T Consensus 241 dE~~~~~~~~~~~~~~~~~d~v~~k~ 266 (368)
T 3q45_A 241 DESCCNSFDAERLIQIQACDSFNLKL 266 (368)
T ss_dssp STTCCSHHHHHHHHHTTCCSEEEECT
T ss_pred cCCcCCHHHHHHHHHcCCCCeEEech
Confidence 99999999999999986 78888764
|
| >3tj4_A Mandelate racemase; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.50A {Agrobacterium tumefaciens} PDB: 4h19_A* | Back alignment and structure |
|---|
Probab=86.85 E-value=6.3 Score=37.17 Aligned_cols=86 Identities=9% Similarity=0.031 Sum_probs=60.9
Q ss_pred HHHHHHHHHhc--CCcEEEEee--cCHHHHH----HHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEE
Q 019244 188 WKDVKWLQTIT--KLPILVKGV--LTAEDAR----IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 259 (344)
Q Consensus 188 ~~~i~~i~~~~--~~PvivK~v--~~~~~a~----~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via 259 (344)
.+.++.+|+.+ +.++.+..- .+.+++. .+.+.|+++|-= ...+..++.+.++++.. .+||++
T Consensus 184 ~~~v~avR~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iEq--------P~~~~d~~~~~~l~~~~--~iPIa~ 253 (372)
T 3tj4_A 184 IARLTAVRERVDSAVRIAIDGNGKWDLPTCQRFCAAAKDLDIYWFEE--------PLWYDDVTSHARLARNT--SIPIAL 253 (372)
T ss_dssp HHHHHHHHHHSCTTCEEEEECTTCCCHHHHHHHHHHTTTSCEEEEES--------CSCTTCHHHHHHHHHHC--SSCEEE
T ss_pred HHHHHHHHHHcCCCCcEEeeCCCCCCHHHHHHHHHHHhhcCCCEEEC--------CCCchhHHHHHHHHhhc--CCCEEe
Confidence 45688888887 477877643 4666654 344556665531 01123567777777766 799999
Q ss_pred ecCCCCHHHHHHHHHcC-CCEEEEc
Q 019244 260 DGGVRRGTDVFKALALG-ASGIFIG 283 (344)
Q Consensus 260 ~GGIr~g~dv~kalalG-Ad~V~ig 283 (344)
+..+.+..|+.+++..| +|.|++-
T Consensus 254 dE~~~~~~~~~~~i~~~~~d~v~~k 278 (372)
T 3tj4_A 254 GEQLYTVDAFRSFIDAGAVAYVQPD 278 (372)
T ss_dssp CTTCCSHHHHHHHHHTTCCSEECCC
T ss_pred CCCccCHHHHHHHHHcCCCCEEEeC
Confidence 99999999999999987 6888874
|
| >1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A | Back alignment and structure |
|---|
Probab=86.78 E-value=3.7 Score=37.77 Aligned_cols=91 Identities=24% Similarity=0.374 Sum_probs=60.7
Q ss_pred HHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCC-CC----CCCCchhhHH----HHHHHHHHccCCCcEEEe
Q 019244 190 DVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHG-AR----QLDYVPATIM----ALEEVVKATQGRIPVFLD 260 (344)
Q Consensus 190 ~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~g-G~----~~~~g~~~~~----~l~~i~~~~~~~~~via~ 260 (344)
.++++.+. +-|+.+=++.+.-.|+.+.++|+|+|.+++.+ +. ..|.++-+++ .+..|.+.. ++||++|
T Consensus 8 ~lr~l~~~-~~~i~~~~a~D~~sA~~~~~aG~~ai~vs~~~~a~~~~G~pD~~~vt~~em~~~~~~I~~~~--~~PviaD 84 (295)
T 1xg4_A 8 AFRAALTK-ENPLQIVGTINANHALLAQRAGYQAIYLSGGGVAAGSLGLPDLGISTLDDVLTDIRRITDVC--SLPLLVD 84 (295)
T ss_dssp HHHHHHHH-SSSEEEEECSSHHHHHHHHHTTCSCEEECHHHHHHTTTCCCSSSCSCHHHHHHHHHHHHHHC--CSCEEEE
T ss_pred HHHHHHhC-CCcEEEecCcCHHHHHHHHHcCCCEEEECchHhhhhhcCCCCCCCCCHHHHHHHHHHHHhhC--CCCEEec
Confidence 34444443 56888888889999999999999999998652 11 1234444443 334444444 6899998
Q ss_pred c--CCC-CHHHHH----HHHHcCCCEEEEc
Q 019244 261 G--GVR-RGTDVF----KALALGASGIFIG 283 (344)
Q Consensus 261 G--GIr-~g~dv~----kalalGAd~V~ig 283 (344)
. |.. ++.++. +.+..||++|-+-
T Consensus 85 ~d~Gyg~~~~~~~~~v~~l~~aGa~gv~iE 114 (295)
T 1xg4_A 85 ADIGFGSSAFNVARTVKSMIKAGAAGLHIE 114 (295)
T ss_dssp CTTCSSSSHHHHHHHHHHHHHHTCSEEEEE
T ss_pred CCcccCCCHHHHHHHHHHHHHcCCeEEEEC
Confidence 7 554 555554 3556899999873
|
| >2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus} | Back alignment and structure |
|---|
Probab=86.76 E-value=3.5 Score=37.50 Aligned_cols=64 Identities=22% Similarity=0.346 Sum_probs=47.0
Q ss_pred HHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEec--CCCCHHHHHHHHHcCCCEEEEchHHHHH
Q 019244 212 DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG--GVRRGTDVFKALALGASGIFIGRPVVYS 289 (344)
Q Consensus 212 ~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~G--GIr~g~dv~kalalGAd~V~ig~~~l~~ 289 (344)
.++...++|||.|.+- ++++.+.+.++.+.+ ++|+-... +.-+ +.+.-.+|.+.|..+...+.+
T Consensus 173 Ra~ay~eAGAd~i~~e---------~~~~~~~~~~i~~~~--~~P~n~~~~~~~~~---~~eL~~lGv~~v~~~~~~~ra 238 (275)
T 2ze3_A 173 RGQAYADAGADGIFVP---------LALQSQDIRALADAL--RVPLNVMAFPGSPV---PRALLDAGAARVSFGQSLMLA 238 (275)
T ss_dssp HHHHHHHTTCSEEECT---------TCCCHHHHHHHHHHC--SSCEEEECCTTSCC---HHHHHHTTCSEEECTTHHHHH
T ss_pred HHHHHHHCCCCEEEEC---------CCCCHHHHHHHHHhc--CCCEEEecCCCCCC---HHHHHHcCCcEEEEChHHHHH
Confidence 3677889999999883 346677888888887 57776553 3333 445667999999999887765
|
| >2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A | Back alignment and structure |
|---|
Probab=86.76 E-value=8.3 Score=35.30 Aligned_cols=92 Identities=23% Similarity=0.167 Sum_probs=59.3
Q ss_pred HHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCC-C--C-CCCCchhhHHH-HHHHHHHcc-CCCcEEEec--C
Q 019244 191 VKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHG-A--R-QLDYVPATIMA-LEEVVKATQ-GRIPVFLDG--G 262 (344)
Q Consensus 191 i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~g-G--~-~~~~g~~~~~~-l~~i~~~~~-~~~~via~G--G 262 (344)
++++.+. +-|+.+=++.+.-.|+.+.++|+|+|.+++.+ + . ..|.++-+++. +..++...+ -++||++|. |
T Consensus 7 lr~l~~~-~~~i~~~~a~D~~sA~~~~~aG~~ai~vs~~~~a~~~G~pD~~~vt~~em~~~~~~I~~~~~~PviaD~d~G 85 (290)
T 2hjp_A 7 LRAALDS-GRLFTAMAAHNPLVAKLAEQAGFGGIWGSGFELSASYAVPDANILSMSTHLEMMRAIASTVSIPLIADIDTG 85 (290)
T ss_dssp HHHHHHH-CCCEEEEECSSHHHHHHHHHHTCSEEEECHHHHHHHTTSCTTTCSCHHHHHHHHHHHHTTCSSCEEEECTTT
T ss_pred HHHHHhC-CCcEEEecCCCHHHHHHHHHcCCCEEEEChHHHHHhCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 4444432 56888888889999999999999999998631 1 1 12334444433 322222222 279999976 5
Q ss_pred CCCHHHHH----HHHHcCCCEEEEc
Q 019244 263 VRRGTDVF----KALALGASGIFIG 283 (344)
Q Consensus 263 Ir~g~dv~----kalalGAd~V~ig 283 (344)
..+..++. +.+..||.+|-+-
T Consensus 86 yg~~~~~~~~v~~l~~aGa~gv~iE 110 (290)
T 2hjp_A 86 FGNAVNVHYVVPQYEAAGASAIVME 110 (290)
T ss_dssp TSSHHHHHHHHHHHHHHTCSEEEEE
T ss_pred CCCHHHHHHHHHHHHHhCCeEEEEc
Confidence 55666554 4556899999874
|
| >1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomera; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A | Back alignment and structure |
|---|
Probab=86.70 E-value=3.3 Score=38.06 Aligned_cols=91 Identities=24% Similarity=0.236 Sum_probs=56.9
Q ss_pred HHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCC-CC---CCCCchhhHH----HHHHHHHHccCCCcEEEec
Q 019244 190 DVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHG-AR---QLDYVPATIM----ALEEVVKATQGRIPVFLDG 261 (344)
Q Consensus 190 ~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~g-G~---~~~~g~~~~~----~l~~i~~~~~~~~~via~G 261 (344)
.++++.+. +-|+.+=++.+.-.|+.+.++|+|+|.+++.+ +. ..|.++-+++ .+..|.+.. ++||++|.
T Consensus 10 ~lr~l~~~-~~~i~~~~a~D~~sA~~~~~aG~~ai~vsg~~~a~~lG~pD~~~vt~~em~~~~~~I~~~~--~~PviaD~ 86 (295)
T 1s2w_A 10 QLKQMLNS-KDLEFIMEAHNGLSARIVQEAGFKGIWGSGLSVSAQLGVRDSNEASWTQVVEVLEFMSDAS--DVPILLDA 86 (295)
T ss_dssp HHHHHHHS-SSCEEEEEECSHHHHHHHHHHTCSCEEECCHHHHHTC---------CHHHHHHHHHHHHTC--SSCEEEEC
T ss_pred HHHHHHhC-CCcEEEecCCCHHHHHHHHHcCCCEEEeChHHHHHhCCCCCCCCCCHHHHHHHHHHHHhcC--CCCEEecC
Confidence 34454442 56888888899999999999999999998632 11 1222332322 233333333 79999986
Q ss_pred --CCCCHHHHH----HHHHcCCCEEEEc
Q 019244 262 --GVRRGTDVF----KALALGASGIFIG 283 (344)
Q Consensus 262 --GIr~g~dv~----kalalGAd~V~ig 283 (344)
|..+..++. +.+..||.+|-+-
T Consensus 87 d~Gyg~~~~v~~~v~~l~~aGaagv~iE 114 (295)
T 1s2w_A 87 DTGYGNFNNARRLVRKLEDRGVAGACLE 114 (295)
T ss_dssp CSSCSSHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEEEC
Confidence 555655554 3456899999874
|
| >1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A | Back alignment and structure |
|---|
Probab=86.49 E-value=0.94 Score=40.62 Aligned_cols=42 Identities=21% Similarity=0.294 Sum_probs=36.0
Q ss_pred cHHHHHHHHHhcCCcEEEEeecC-HHHHHHHHHcCCcEEEEcc
Q 019244 187 SWKDVKWLQTITKLPILVKGVLT-AEDARIAVQAGAAGIIVSN 228 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v~~-~~~a~~~~~~G~d~I~v~~ 228 (344)
..+.++++++..++||++-+..+ ++++..+.++|+|+++|.+
T Consensus 189 ~~~~i~~v~~~~~~pI~vgGGI~~~e~~~~~~~~GAdgvvVGS 231 (262)
T 1rd5_A 189 VESLIQEVKKVTNKPVAVGFGISKPEHVKQIAQWGADGVIIGS 231 (262)
T ss_dssp HHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEECH
T ss_pred HHHHHHHHHhhcCCeEEEECCcCCHHHHHHHHHcCCCEEEECh
Confidence 34578999998899999987655 9999999999999999954
|
| >3mqt_A Mandelate racemase/muconate lactonizing protein; PSI-II, NYSGXRC, muconate lactonizing EN structural genomics, protein structure initiative; 2.10A {Shewanella pealeana} | Back alignment and structure |
|---|
Probab=86.40 E-value=1.5 Score=41.89 Aligned_cols=87 Identities=9% Similarity=-0.020 Sum_probs=64.8
Q ss_pred HHHHHHHHHhc--CCcEEEEee--c-CHHHH----HHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEE
Q 019244 188 WKDVKWLQTIT--KLPILVKGV--L-TAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 258 (344)
Q Consensus 188 ~~~i~~i~~~~--~~PvivK~v--~-~~~~a----~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~vi 258 (344)
.+.++.+|+.+ +.++.+..- . +.+++ +.+.+.|+++|--- ..+..++.+.++++.. ++||+
T Consensus 187 ~~~v~avR~a~G~d~~l~vDan~~~~~~~~A~~~~~~L~~~~i~~iEeP--------~~~~~~~~~~~l~~~~--~iPIa 256 (394)
T 3mqt_A 187 VAYLRELREVIGWDMDMMVDCLYRWTDWQKARWTFRQLEDIDLYFIEAC--------LQHDDLIGHQKLAAAI--NTRLC 256 (394)
T ss_dssp HHHHHHHHHHHCSSSEEEEECTTCCSCHHHHHHHHHHTGGGCCSEEESC--------SCTTCHHHHHHHHHHS--SSEEE
T ss_pred HHHHHHHHHHhCCCCeEEEECCCCCCCHHHHHHHHHHHhhcCCeEEECC--------CCcccHHHHHHHHhhC--CCCEE
Confidence 45688899887 578888753 5 66664 44556788888521 1123567778887776 79999
Q ss_pred EecCCCCHHHHHHHHHcC-CCEEEEch
Q 019244 259 LDGGVRRGTDVFKALALG-ASGIFIGR 284 (344)
Q Consensus 259 a~GGIr~g~dv~kalalG-Ad~V~ig~ 284 (344)
+++.+.+..|+.+++..| +|.|++--
T Consensus 257 ~dE~~~~~~~~~~~l~~~~~d~v~~k~ 283 (394)
T 3mqt_A 257 GAEMSTTRFEAQEWLEKTGISVVQSDY 283 (394)
T ss_dssp ECTTCCHHHHHHHHHHHHCCSEECCCT
T ss_pred eCCCcCCHHHHHHHHHcCCCCeEecCc
Confidence 999999999999999986 79988753
|
| >2gl5_A Putative dehydratase protein; structural genomics, protein structure initiati nysgxrc; 1.60A {Salmonella typhimurium} SCOP: c.1.11.2 d.54.1.1 PDB: 4e6m_A* | Back alignment and structure |
|---|
Probab=86.38 E-value=2.2 Score=40.80 Aligned_cols=87 Identities=11% Similarity=-0.012 Sum_probs=64.9
Q ss_pred cHHHHHHHHHhc--CCcEEEEee--cCHHHH----HHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEE
Q 019244 187 SWKDVKWLQTIT--KLPILVKGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 258 (344)
Q Consensus 187 ~~~~i~~i~~~~--~~PvivK~v--~~~~~a----~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~vi 258 (344)
..+.++.+|+.+ ++++.+..- .+++++ +.+.+.|+++|--- ..+..++.+.++++.+ ++||+
T Consensus 204 ~~e~v~avR~a~G~d~~l~vDan~~~~~~~ai~~~~~l~~~~i~~iE~P--------~~~~~~~~~~~l~~~~--~iPIa 273 (410)
T 2gl5_A 204 GEARIAAMREAMGDDADIIVEIHSLLGTNSAIQFAKAIEKYRIFLYEEP--------IHPLNSDNMQKVSRST--TIPIA 273 (410)
T ss_dssp HHHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHGGGCEEEEECS--------SCSSCHHHHHHHHHHC--SSCEE
T ss_pred HHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCCeEECC--------CChhhHHHHHHHHhhC--CCCEE
Confidence 456788999887 588888753 466664 45566787776421 1123577788888776 79999
Q ss_pred EecCCCCHHHHHHHHHcC-CCEEEEc
Q 019244 259 LDGGVRRGTDVFKALALG-ASGIFIG 283 (344)
Q Consensus 259 a~GGIr~g~dv~kalalG-Ad~V~ig 283 (344)
+++.+.+..++.+++..| +|.|++-
T Consensus 274 ~dE~~~~~~~~~~~i~~~~~d~v~ik 299 (410)
T 2gl5_A 274 TGERSYTRWGYRELLEKQSIAVAQPD 299 (410)
T ss_dssp ECTTCCTTHHHHHHHHTTCCSEECCC
T ss_pred ecCCcCCHHHHHHHHHcCCCCEEecC
Confidence 999999999999999987 7998874
|
| >3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A* | Back alignment and structure |
|---|
Probab=86.32 E-value=7.5 Score=33.59 Aligned_cols=87 Identities=22% Similarity=0.076 Sum_probs=56.0
Q ss_pred HHHHHHHHHhc-CCcE--EEEeecCHH-HHHHHHHcCCcEEEEccCCCCCCCCchhhHH-HHHHHHHHccCCCcEEE-ec
Q 019244 188 WKDVKWLQTIT-KLPI--LVKGVLTAE-DARIAVQAGAAGIIVSNHGARQLDYVPATIM-ALEEVVKATQGRIPVFL-DG 261 (344)
Q Consensus 188 ~~~i~~i~~~~-~~Pv--ivK~v~~~~-~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~-~l~~i~~~~~~~~~via-~G 261 (344)
.+.|+++|+.+ +.|+ -+|....++ .++.+.++|+|+|++...++ ..++. .+..+.+ . .+..++ .=
T Consensus 47 ~~~i~~lr~~~~~~~i~ld~~l~d~p~~~~~~~~~aGad~i~vh~~~~------~~~~~~~~~~~~~-~--g~~~~~d~l 117 (218)
T 3jr2_A 47 MKAVSTLRHNHPNHILVCDMKTTDGGAILSRMAFEAGADWITVSAAAH------IATIAACKKVADE-L--NGEIQIEIY 117 (218)
T ss_dssp THHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHHTCSEEEEETTSC------HHHHHHHHHHHHH-H--TCEEEEECC
T ss_pred HHHHHHHHHhCCCCcEEEEEeecccHHHHHHHHHhcCCCEEEEecCCC------HHHHHHHHHHHHH-h--CCccceeee
Confidence 45799999884 5555 456654444 47889999999999954322 22232 3333332 2 355554 34
Q ss_pred CCCCHHHHHHHHHcCCCEEEEc
Q 019244 262 GVRRGTDVFKALALGASGIFIG 283 (344)
Q Consensus 262 GIr~g~dv~kalalGAd~V~ig 283 (344)
|+.|..++.++..+|+|.+.+.
T Consensus 118 ~~~T~~~~~~~~~~g~d~v~~~ 139 (218)
T 3jr2_A 118 GNWTMQDAKAWVDLGITQAIYH 139 (218)
T ss_dssp SSCCHHHHHHHHHTTCCEEEEE
T ss_pred ecCCHHHHHHHHHcCccceeee
Confidence 5678888888888999987653
|
| >3r0u_A Enzyme of enolase superfamily; structural genomics, putative epimerase, PSI-biolog YORK structural genomics research consortium; HET: MSE TAR; 1.90A {Francisella philomiragia subsp} PDB: 3px5_A* 3r0k_A* 3r10_A 3r11_A 3r1z_A* | Back alignment and structure |
|---|
Probab=86.29 E-value=14 Score=34.99 Aligned_cols=89 Identities=17% Similarity=0.063 Sum_probs=61.9
Q ss_pred HHHHHHHHHhcC--CcEEEEee--cCHHHH----HHHHH--cCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcE
Q 019244 188 WKDVKWLQTITK--LPILVKGV--LTAEDA----RIAVQ--AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 257 (344)
Q Consensus 188 ~~~i~~i~~~~~--~PvivK~v--~~~~~a----~~~~~--~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~v 257 (344)
.+.++.+|+.++ +++.+..- .+.++| +.+.+ .++.+|-= ...+..++.+.++++.. .+||
T Consensus 173 ~~~v~avR~a~g~~~~L~vDaN~~w~~~~A~~~~~~l~~~~~~l~~iEe--------P~~~~d~~~~~~l~~~~--~iPI 242 (379)
T 3r0u_A 173 IQLLKALDNEFSKNIKFRFDANQGWNLAQTKQFIEEINKYSLNVEIIEQ--------PVKYYDIKAMAEITKFS--NIPV 242 (379)
T ss_dssp HHHHHHHHHHCCTTSEEEEECTTCCCHHHHHHHHHHHHTSCCCEEEEEC--------CSCTTCHHHHHHHHHHC--SSCE
T ss_pred HHHHHHHHHhcCCCCeEEEeCCCCcCHHHHHHHHHHHhhcCCCcEEEEC--------CCCcccHHHHHHHHhcC--CCCE
Confidence 456888888873 67777642 466665 34445 46666531 11123467777887766 7999
Q ss_pred EEecCCCCHHHHHHHHHcC-CCEEEEchHH
Q 019244 258 FLDGGVRRGTDVFKALALG-ASGIFIGRPV 286 (344)
Q Consensus 258 ia~GGIr~g~dv~kalalG-Ad~V~ig~~~ 286 (344)
.++.-+.+..|+.+++..| +|.|++--..
T Consensus 243 a~dE~~~~~~~~~~~i~~~a~d~v~~k~~~ 272 (379)
T 3r0u_A 243 VADESVFDAKDAERVIDEQACNMINIKLAK 272 (379)
T ss_dssp EESTTCSSHHHHHHHHHTTCCSEEEECHHH
T ss_pred EeCCccCCHHHHHHHHHcCCCCEEEECccc
Confidence 9999999999999999987 6888886443
|
| >3ro6_B Putative chloromuconate cycloisomerase; TIM barrel; 2.20A {Methylococcus capsulatus} PDB: 3rit_A | Back alignment and structure |
|---|
Probab=86.11 E-value=2.9 Score=39.26 Aligned_cols=89 Identities=16% Similarity=0.100 Sum_probs=63.6
Q ss_pred HHHHHHHHHhc--CCcEEEEee--cCHHHH----HHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEE
Q 019244 188 WKDVKWLQTIT--KLPILVKGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 259 (344)
Q Consensus 188 ~~~i~~i~~~~--~~PvivK~v--~~~~~a----~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via 259 (344)
.+.++.+|+.+ ++++.+..- .+.+++ +.+.+.|+++|-= ...+..++.+.++++.. .+||++
T Consensus 171 ~~~v~avR~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iEq--------P~~~~d~~~~~~l~~~~--~iPIa~ 240 (356)
T 3ro6_B 171 FERLRRLHETLAGRAVVRVDPNQSYDRDGLLRLDRLVQELGIEFIEQ--------PFPAGRTDWLRALPKAI--RRRIAA 240 (356)
T ss_dssp HHHHHHHHHHHTTSSEEEEECTTCCCHHHHHHHHHHHHHTTCCCEEC--------CSCTTCHHHHHTSCHHH--HHTEEE
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEC--------CCCCCcHHHHHHHHhcC--CCCEEe
Confidence 45688888887 477887753 455554 5567888888852 01122456666666555 699999
Q ss_pred ecCCCCHHHHHHHHHcC--CCEEEEchHH
Q 019244 260 DGGVRRGTDVFKALALG--ASGIFIGRPV 286 (344)
Q Consensus 260 ~GGIr~g~dv~kalalG--Ad~V~ig~~~ 286 (344)
++-+.+..|+.+++..| +|.|++--..
T Consensus 241 dE~~~~~~~~~~~~~~~~~~d~v~~k~~~ 269 (356)
T 3ro6_B 241 DESLLGPADAFALAAPPAACGIFNIKLMK 269 (356)
T ss_dssp STTCCSHHHHHHHHSSSCSCSEEEECHHH
T ss_pred CCcCCCHHHHHHHHhcCCcCCEEEEcccc
Confidence 99999999999999876 8999987543
|
| >3go2_A Putative L-alanine-DL-glutamate epimerase; structural genomics, isomerase, PSI-2; 1.70A {Burkholderia xenovorans} PDB: 2oo6_A 3sn0_A 3sn1_A* 3sn4_A* | Back alignment and structure |
|---|
Probab=86.10 E-value=2.1 Score=41.10 Aligned_cols=87 Identities=9% Similarity=-0.050 Sum_probs=66.1
Q ss_pred cHHHHHHHHHhc--CCcEEEEee--cCHHHH----HHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEE
Q 019244 187 SWKDVKWLQTIT--KLPILVKGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 258 (344)
Q Consensus 187 ~~~~i~~i~~~~--~~PvivK~v--~~~~~a----~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~vi 258 (344)
..+.++.+|+.+ +.++.+..- .+.+++ +.+.+.|+++|-.- ...++.+.++++.+ .+||+
T Consensus 199 ~~e~v~avR~avG~d~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iE~P----------~~d~~~~~~l~~~~--~iPIa 266 (409)
T 3go2_A 199 LRAHLEALRDGAGPDVEILLDLNFNAKPEGYLKILRELADFDLFWVEID----------SYSPQGLAYVRNHS--PHPIS 266 (409)
T ss_dssp HHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHTTTSCCSEEECC----------CSCHHHHHHHHHTC--SSCEE
T ss_pred HHHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHhhcCCeEEEeC----------cCCHHHHHHHHhhC--CCCEE
Confidence 346789999987 588888753 466664 44556788888742 12566777777765 79999
Q ss_pred EecCCCCHHHHHHHHHcC-CCEEEEchH
Q 019244 259 LDGGVRRGTDVFKALALG-ASGIFIGRP 285 (344)
Q Consensus 259 a~GGIr~g~dv~kalalG-Ad~V~ig~~ 285 (344)
+++.+.+..|+.+++..| +|.|++--.
T Consensus 267 ~dE~~~~~~~~~~~i~~~~~d~v~~k~~ 294 (409)
T 3go2_A 267 SCETLFGIREFKPFFDANAVDVAIVDTI 294 (409)
T ss_dssp ECTTCCHHHHHHHHHHTTCCSEEEECHH
T ss_pred eCCCcCCHHHHHHHHHhCCCCEEEeCCC
Confidence 999999999999999988 799888643
|
| >2qde_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-II, NYSGXRC, enolase, structural genomics, protei structure initiative, PSI-2; 1.93A {Azoarcus SP} | Back alignment and structure |
|---|
Probab=85.96 E-value=2.8 Score=39.92 Aligned_cols=88 Identities=14% Similarity=0.181 Sum_probs=64.5
Q ss_pred cHHHHHHHHHhc--CCcEEEEee--cCHHHH----HHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEE
Q 019244 187 SWKDVKWLQTIT--KLPILVKGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 258 (344)
Q Consensus 187 ~~~~i~~i~~~~--~~PvivK~v--~~~~~a----~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~vi 258 (344)
..+.++.+|+.+ ++++.+..- .+.+++ +.+.+.|+++|--- ..+..++.+.++++.. ++||+
T Consensus 175 ~~e~v~avR~a~g~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iEqP--------~~~~~~~~~~~l~~~~--~iPIa 244 (397)
T 2qde_A 175 DIAMVAEVRRAVGDDVDLFIDINGAWTYDQALTTIRALEKYNLSKIEQP--------LPAWDLDGMARLRGKV--ATPIY 244 (397)
T ss_dssp HHHHHHHHHHHHCTTSCEEEECTTCCCHHHHHHHHHHHGGGCCSCEECC--------SCTTCHHHHHHHHTTC--SSCEE
T ss_pred HHHHHHHHHHhhCCCCEEEEECCCCCCHHHHHHHHHHHHhCCCCEEECC--------CChhhHHHHHHHHhhC--CCCEE
Confidence 345688899887 588888753 466654 45667788877421 1123567777777655 79999
Q ss_pred EecCCCCHHHHHHHHHcC-CCEEEEch
Q 019244 259 LDGGVRRGTDVFKALALG-ASGIFIGR 284 (344)
Q Consensus 259 a~GGIr~g~dv~kalalG-Ad~V~ig~ 284 (344)
+++.+.+..|+.+++..| +|.|++--
T Consensus 245 ~dE~~~~~~~~~~~i~~~~~d~v~ik~ 271 (397)
T 2qde_A 245 ADESAQELHDLLAIINKGAADGLMIKT 271 (397)
T ss_dssp ESTTCCSHHHHHHHHHHTCCSEEEECH
T ss_pred EeCCcCCHHHHHHHHHcCCCCEEEEec
Confidence 999999999999999987 89998853
|
| >1tkk_A Similar to chloromuconate cycloisomerase; epimerase, enolase super family,; 2.10A {Bacillus subtilis} SCOP: c.1.11.2 d.54.1.1 PDB: 1jpm_A | Back alignment and structure |
|---|
Probab=85.92 E-value=4.7 Score=37.79 Aligned_cols=89 Identities=17% Similarity=0.160 Sum_probs=65.7
Q ss_pred cHHHHHHHHHhc--CCcEEEEee--cCHHHH----HHHHH--cCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCc
Q 019244 187 SWKDVKWLQTIT--KLPILVKGV--LTAEDA----RIAVQ--AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIP 256 (344)
Q Consensus 187 ~~~~i~~i~~~~--~~PvivK~v--~~~~~a----~~~~~--~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~ 256 (344)
..+.++.+|+.+ ++++.+..- .+.+++ +.+.+ .|+++|-= ...+..++.+.++++.. ++|
T Consensus 171 d~~~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~~~i~~iEq--------P~~~~d~~~~~~l~~~~--~ip 240 (366)
T 1tkk_A 171 DIARIQEIRKRVGSAVKLRLDANQGWRPKEAVTAIRKMEDAGLGIELVEQ--------PVHKDDLAGLKKVTDAT--DTP 240 (366)
T ss_dssp HHHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHHHTTCCEEEEEC--------CSCTTCHHHHHHHHHHC--SSC
T ss_pred HHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCceEEEC--------CCCcccHHHHHHHHhhC--CCC
Confidence 345788999887 588888753 456554 55667 77777741 11234677788887766 799
Q ss_pred EEEecCCCCHHHHHHHHHcC-CCEEEEchH
Q 019244 257 VFLDGGVRRGTDVFKALALG-ASGIFIGRP 285 (344)
Q Consensus 257 via~GGIr~g~dv~kalalG-Ad~V~ig~~ 285 (344)
|++++.+.+..|+.+++..| +|.|++--.
T Consensus 241 Ia~dE~~~~~~~~~~~i~~~~~d~v~ik~~ 270 (366)
T 1tkk_A 241 IMADESVFTPRQAFEVLQTRSADLINIKLM 270 (366)
T ss_dssp EEECTTCCSHHHHHHHHHHTCCSEEEECHH
T ss_pred EEEcCCCCCHHHHHHHHHhCCCCEEEeehh
Confidence 99999999999999999877 899998643
|
| >3b8i_A PA4872 oxaloacetate decarboxylase; alpha/beta barrel, helix swapping, lyase; 1.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=85.91 E-value=3.5 Score=37.74 Aligned_cols=92 Identities=21% Similarity=0.264 Sum_probs=60.3
Q ss_pred HHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCC-C-C---CCCCchhhHHH-HHHHHHHcc-CCCcEEEec--
Q 019244 191 VKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHG-A-R---QLDYVPATIMA-LEEVVKATQ-GRIPVFLDG-- 261 (344)
Q Consensus 191 i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~g-G-~---~~~~g~~~~~~-l~~i~~~~~-~~~~via~G-- 261 (344)
++++.+. +-|+.+=++.+.-.|+.+.++|+|+|.+++.+ + . ..|.++-+++. +..++...+ -++||++|.
T Consensus 13 lr~l~~~-~~~i~~~~a~D~~sA~i~e~aGf~ai~vs~s~~a~~~lG~pD~~~vt~~em~~~~~~I~r~~~~PviaD~d~ 91 (287)
T 3b8i_A 13 FRALLDS-SRCYHTASVFDPMSARIAADLGFECGILGGSVASLQVLAAPDFALITLSEFVEQATRIGRVARLPVIADADH 91 (287)
T ss_dssp HHHHHHS-SCCEECEECCSHHHHHHHHHTTCSCEEECHHHHHHHHHSCCSSSCSCHHHHHHHHHHHHTTCSSCEEEECTT
T ss_pred HHHHHhC-CCcEEEecCCCHHHHHHHHHcCCCEEEeCcHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 4444432 56888888889999999999999999998652 1 0 13444445443 333332222 278999976
Q ss_pred CCCCHHHHH----HHHHcCCCEEEEc
Q 019244 262 GVRRGTDVF----KALALGASGIFIG 283 (344)
Q Consensus 262 GIr~g~dv~----kalalGAd~V~ig 283 (344)
|..+..++. +.+..||.+|-+-
T Consensus 92 Gyg~~~~~~~~v~~l~~aGa~gv~iE 117 (287)
T 3b8i_A 92 GYGNALNVMRTVVELERAGIAALTIE 117 (287)
T ss_dssp CSSSHHHHHHHHHHHHHHTCSEEEEE
T ss_pred CCCCHHHHHHHHHHHHHhCCeEEEEc
Confidence 555766654 4556899999874
|
| >2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A | Back alignment and structure |
|---|
Probab=85.91 E-value=3.6 Score=37.49 Aligned_cols=89 Identities=17% Similarity=0.202 Sum_probs=50.1
Q ss_pred HHHHHHcCCcEEEEccCCCCCCCCch-hhHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHcCCCEEEEchHHH
Q 019244 213 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 287 (344)
Q Consensus 213 a~~~~~~G~d~I~v~~~gG~~~~~g~-~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~k----alalGAd~V~ig~~~l 287 (344)
++.+++.|+|+|.+.|+-|-...-.. .-.+.+..+.+.+.+ ||+--|=.+-.++++ +-.+|||++++-.|++
T Consensus 26 v~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~g---ViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y 102 (288)
T 2nuw_A 26 AKNLLEKGIDAIFVNGTTGLGPALSKDEKRQNLNALYDVTHK---LIFQVGSLNLNDVMELVKFSNEMDILGVSSHSPYY 102 (288)
T ss_dssp HHHHHHTTCCEEEETSTTTTGGGSCHHHHHHHHHHHTTTCSC---EEEECCCSCHHHHHHHHHHHHTSCCSEEEECCCCS
T ss_pred HHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCC---eEEeeCCCCHHHHHHHHHHHHhcCCCEEEEcCCcC
Confidence 34577899999999775442111111 112333333333332 655334334455543 2337999999999988
Q ss_pred HH-hhhcChHHHHHHHHHHHH
Q 019244 288 YS-LAAEGEKGVRRVLEMLRE 307 (344)
Q Consensus 288 ~~-~~~~G~~~v~~~l~~l~~ 307 (344)
+. . .++++.++++.+.+
T Consensus 103 ~~~~---s~~~l~~~f~~va~ 120 (288)
T 2nuw_A 103 FPRL---PEKFLAKYYEEIAR 120 (288)
T ss_dssp SCSC---CHHHHHHHHHHHHH
T ss_pred CCCC---CHHHHHHHHHHHHH
Confidence 64 2 45666666655543
|
| >4e5t_A Mandelate racemase / muconate lactonizing enzyme, terminal domain protein; aldolase, structural genomics, biology; 2.90A {Labrenzia alexandrii} | Back alignment and structure |
|---|
Probab=85.49 E-value=2.1 Score=41.07 Aligned_cols=88 Identities=20% Similarity=0.115 Sum_probs=66.0
Q ss_pred cHHHHHHHHHhc--CCcEEEEee--cCHHHH----HHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEE
Q 019244 187 SWKDVKWLQTIT--KLPILVKGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 258 (344)
Q Consensus 187 ~~~~i~~i~~~~--~~PvivK~v--~~~~~a----~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~vi 258 (344)
+.+.++.+|+.+ +.++.+..- .+.++| +.+.+.|+++|--- ..+..++.+.++++.. ++||+
T Consensus 194 d~~~v~avR~a~G~d~~l~vDan~~~~~~~A~~~~~~l~~~~i~~iEeP--------~~~~~~~~~~~l~~~~--~iPIa 263 (404)
T 4e5t_A 194 SEAFCKQIRAAVGTKADLLFGTHGQFTVSGAKRLARRLEAYDPLWFEEP--------IPPEKPEDMAEVARYT--SIPVA 263 (404)
T ss_dssp HHHHHHHHHHHHGGGSEEEECCCSCBCHHHHHHHHHHHGGGCCSEEECC--------SCTTCHHHHHHHHHHC--SSCEE
T ss_pred HHHHHHHHHHHcCCCCeEEEeCCCCcCHHHHHHHHHHHhhcCCcEEECC--------CCcccHHHHHHHHhhC--CCCEE
Confidence 345788999987 478888753 466664 45667888888521 1123567788888776 79999
Q ss_pred EecCCCCHHHHHHHHHcC-CCEEEEch
Q 019244 259 LDGGVRRGTDVFKALALG-ASGIFIGR 284 (344)
Q Consensus 259 a~GGIr~g~dv~kalalG-Ad~V~ig~ 284 (344)
+++.+.+..|+.+++..| +|.|++--
T Consensus 264 ~dE~~~~~~~~~~~i~~~a~d~v~~d~ 290 (404)
T 4e5t_A 264 TGERLCTKYEFSRVLETGAASILQMNL 290 (404)
T ss_dssp ECTTCCHHHHHHHHHHHTCCSEECCCT
T ss_pred eCCCcCCHHHHHHHHHhCCCCEEecCc
Confidence 999999999999999988 68888754
|
| >3mkc_A Racemase; metabolic process, PSI2, NYSGXRC, structu genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; 1.77A {Pseudovibrio SP} PDB: 3nzg_A | Back alignment and structure |
|---|
Probab=85.37 E-value=2 Score=41.07 Aligned_cols=87 Identities=8% Similarity=-0.069 Sum_probs=64.8
Q ss_pred HHHHHHHHHhc--CCcEEEEee--c-CHHHH----HHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEE
Q 019244 188 WKDVKWLQTIT--KLPILVKGV--L-TAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 258 (344)
Q Consensus 188 ~~~i~~i~~~~--~~PvivK~v--~-~~~~a----~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~vi 258 (344)
.+.++.+|+.+ +.++.+..- . +.+++ +.+.+.|+++|--- ..+..++.+.++++.. ++||+
T Consensus 192 ~e~v~avR~a~G~d~~l~vDaN~~~~~~~~A~~~~~~L~~~~i~~iEeP--------~~~~d~~~~~~l~~~~--~iPIa 261 (394)
T 3mkc_A 192 AYYLRELRGILGHDTDMMVDYLYRFTDWYEVARLLNSIEDLELYFAEAT--------LQHDDLSGHAKLVENT--RSRIC 261 (394)
T ss_dssp HHHHHHHHHHHCSSSEEEEECTTCCCCHHHHHHHHHHTGGGCCSEEESC--------SCTTCHHHHHHHHHHC--SSCBE
T ss_pred HHHHHHHHHHhCCCCeEEEeCCCCCCCHHHHHHHHHHhhhcCCeEEECC--------CCchhHHHHHHHHhhC--CCCEE
Confidence 45688899887 478888753 5 66664 44556788887521 1123567778887776 79999
Q ss_pred EecCCCCHHHHHHHHHcC-CCEEEEch
Q 019244 259 LDGGVRRGTDVFKALALG-ASGIFIGR 284 (344)
Q Consensus 259 a~GGIr~g~dv~kalalG-Ad~V~ig~ 284 (344)
+++.+.+..|+.+++..| +|.|++--
T Consensus 262 ~dE~~~~~~~~~~~l~~~~~d~v~~k~ 288 (394)
T 3mkc_A 262 GAEMSTTRFEAEEWITKGKVHLLQSDY 288 (394)
T ss_dssp ECTTCCHHHHHHHHHHTTCCSEECCCT
T ss_pred eCCCCCCHHHHHHHHHcCCCCeEecCc
Confidence 999999999999999987 79988853
|
| >2hxt_A L-fuconate dehydratase; enolase superfamily, D-erythromohydr unknown function; HET: EHM; 1.70A {Xanthomonas campestris PV} PDB: 1yey_A 2hxu_A* 2hne_A | Back alignment and structure |
|---|
Probab=85.36 E-value=4.8 Score=38.91 Aligned_cols=88 Identities=13% Similarity=0.093 Sum_probs=61.7
Q ss_pred cHHHHHHHHHhc--CCcEEEEee--cCHHHHHH----HHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEE
Q 019244 187 SWKDVKWLQTIT--KLPILVKGV--LTAEDARI----AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 258 (344)
Q Consensus 187 ~~~~i~~i~~~~--~~PvivK~v--~~~~~a~~----~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~vi 258 (344)
..+.++.+|+.+ ++++.+..- .+.+++.. +.+.|+++|--- ..+..++.+.++++.+. .+||+
T Consensus 228 d~e~v~avR~a~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iEqP--------~~~~d~~~~~~l~~~~~-~iPIa 298 (441)
T 2hxt_A 228 DIRRCRLARAAIGPDIAMAVDANQRWDVGPAIDWMRQLAEFDIAWIEEP--------TSPDDVLGHAAIRQGIT-PVPVS 298 (441)
T ss_dssp HHHHHHHHHHHHCSSSEEEEECTTCCCHHHHHHHHHTTGGGCCSCEECC--------SCTTCHHHHHHHHHHHT-TSCEE
T ss_pred HHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCeeeCC--------CCHHHHHHHHHHHhhCC-CCCEE
Confidence 345688888876 477777642 46666543 445677766421 11235667777777652 59999
Q ss_pred EecCCCCHHHHHHHHHcC-CCEEEEc
Q 019244 259 LDGGVRRGTDVFKALALG-ASGIFIG 283 (344)
Q Consensus 259 a~GGIr~g~dv~kalalG-Ad~V~ig 283 (344)
+++.+.+..|+.+++..| +|.|++-
T Consensus 299 ~dE~~~~~~~~~~~i~~~~~d~v~ik 324 (441)
T 2hxt_A 299 TGEHTQNRVVFKQLLQAGAVDLIQID 324 (441)
T ss_dssp ECTTCCSHHHHHHHHHHTCCSEECCC
T ss_pred EeCCcCCHHHHHHHHHcCCCCEEEeC
Confidence 999999999999999987 7999874
|
| >3mwc_A Mandelate racemase/muconate lactonizing protein; enolase, structural genomics, protein structure initiative, nysgrc; 1.80A {Kosmotoga olearia} | Back alignment and structure |
|---|
Probab=85.36 E-value=12 Score=35.66 Aligned_cols=83 Identities=13% Similarity=0.131 Sum_probs=59.3
Q ss_pred cHHHHHHHHHhcCCcEEEEee-cCHHHHHHHHHcC-CcEEEEcc--CCCCCCCCchhhHHHHHHHHHHccCCCcEEEecC
Q 019244 187 SWKDVKWLQTITKLPILVKGV-LTAEDARIAVQAG-AAGIIVSN--HGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 262 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v-~~~~~a~~~~~~G-~d~I~v~~--~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GG 262 (344)
+++..+++++.+++||..-+. .+.++++.+++.| +|.|.+.- .|| +.....+..+++.. .+++...+-
T Consensus 243 d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~~~~~~~d~v~~k~~~~GG------it~~~~ia~~A~~~--gi~~~~~~~ 314 (400)
T 3mwc_A 243 ALLDLKELGERIETPICLDESLISSRVAEFVAKLGISNIWNIKIQRVGG------LLEAIKIYKIATDN--GIKLWGGTM 314 (400)
T ss_dssp CHHHHHHHHHHSSSCEEESTTCCSHHHHHHHHHTTCCSEEEECHHHHTS------HHHHHHHHHHHHHT--TCEEEECCS
T ss_pred hHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHHhcCCCCEEEEcchhhCC------HHHHHHHHHHHHHc--CCEEEecCC
Confidence 688899999999999998775 5789999998877 77777642 233 44333444444444 688887776
Q ss_pred CCCHHHHHHHHHcCC
Q 019244 263 VRRGTDVFKALALGA 277 (344)
Q Consensus 263 Ir~g~dv~kalalGA 277 (344)
..++--.+-++.+.|
T Consensus 315 ~es~i~~aa~~hlaa 329 (400)
T 3mwc_A 315 PESGLGARFLISLAS 329 (400)
T ss_dssp CCCHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHc
Confidence 777777776776654
|
| >2o56_A Putative mandelate racemase; dehydratase, structural genomics, protein structure initiati 2; 2.00A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=85.27 E-value=2.4 Score=40.46 Aligned_cols=87 Identities=14% Similarity=0.101 Sum_probs=65.1
Q ss_pred cHHHHHHHHHhc--CCcEEEEee--cCHHHH----HHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEE
Q 019244 187 SWKDVKWLQTIT--KLPILVKGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 258 (344)
Q Consensus 187 ~~~~i~~i~~~~--~~PvivK~v--~~~~~a----~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~vi 258 (344)
..+.++.+|+.+ ++++.+..- .+.+++ +.+.+.|+++|--- ..+..++.+.++++.+ ++||+
T Consensus 201 ~~e~v~avR~a~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iE~P--------~~~~~~~~~~~l~~~~--~iPIa 270 (407)
T 2o56_A 201 GYDRMAAIRDAVGPDVDIIAEMHAFTDTTSAIQFGRMIEELGIFYYEEP--------VMPLNPAQMKQVADKV--NIPLA 270 (407)
T ss_dssp HHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHHGGGCCSCEECS--------SCSSSHHHHHHHHHHC--CSCEE
T ss_pred HHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCCEEeCC--------CChhhHHHHHHHHHhC--CCCEE
Confidence 446788999877 588888753 466654 45667788877421 1123577788888776 79999
Q ss_pred EecCCCCHHHHHHHHHcC-CCEEEEc
Q 019244 259 LDGGVRRGTDVFKALALG-ASGIFIG 283 (344)
Q Consensus 259 a~GGIr~g~dv~kalalG-Ad~V~ig 283 (344)
+++.+.+..++.+++..| +|.|++-
T Consensus 271 ~dE~~~~~~~~~~~i~~~~~d~v~ik 296 (407)
T 2o56_A 271 AGERIYWRWGYRPFLENGSLSVIQPD 296 (407)
T ss_dssp ECTTCCHHHHHHHHHHTTCCSEECCC
T ss_pred eCCCcCCHHHHHHHHHcCCCCEEecC
Confidence 999999999999999987 7988874
|
| >3vcn_A Mannonate dehydratase; enolase, magnesium binding site, enzyme function initiative, lyase; 1.45A {Caulobacter crescentus} PDB: 4gme_A* 4fi4_A 3thu_A | Back alignment and structure |
|---|
Probab=85.25 E-value=2 Score=41.57 Aligned_cols=88 Identities=10% Similarity=-0.086 Sum_probs=66.1
Q ss_pred cHHHHHHHHHhc--CCcEEEEee--cCHHHH----HHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEE
Q 019244 187 SWKDVKWLQTIT--KLPILVKGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 258 (344)
Q Consensus 187 ~~~~i~~i~~~~--~~PvivK~v--~~~~~a----~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~vi 258 (344)
..+.++.+|+.+ +.++.+..- .+.++| +.+.+.|+++|---- .+..++.+.++++.. ++||+
T Consensus 213 d~e~v~avR~a~G~d~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iEqP~--------~~~d~~~~~~l~~~~--~iPIa 282 (425)
T 3vcn_A 213 VPKLFERAREVLGWDVHLLHDVHHRLTPIEAARLGKDLEPYRLFWLEDSV--------PAENQAGFRLIRQHT--TTPLA 282 (425)
T ss_dssp THHHHHHHHHHHCSSSEEEEECTTCCCHHHHHHHHHHHGGGCCSEEECCS--------CCSSTTHHHHHHHHC--CSCEE
T ss_pred HHHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCCEEECCC--------ChhhHHHHHHHHhcC--CCCEE
Confidence 567899999988 578888753 466664 556678888885311 112445677777766 79999
Q ss_pred EecCCCCHHHHHHHHHcC-CCEEEEch
Q 019244 259 LDGGVRRGTDVFKALALG-ASGIFIGR 284 (344)
Q Consensus 259 a~GGIr~g~dv~kalalG-Ad~V~ig~ 284 (344)
+++.+.+..|+.+++..| +|.|++--
T Consensus 283 ~dE~~~~~~~~~~~i~~~a~d~v~~k~ 309 (425)
T 3vcn_A 283 VGEIFAHVWDAKQLIEEQLIDYLRATV 309 (425)
T ss_dssp ECTTCCSGGGTHHHHHTTCCSEECCCT
T ss_pred eCCCcCCHHHHHHHHHcCCCCeEecCh
Confidence 999999999999999988 78888764
|
| >4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ... | Back alignment and structure |
|---|
Probab=85.17 E-value=3 Score=37.61 Aligned_cols=72 Identities=14% Similarity=0.287 Sum_probs=52.0
Q ss_pred CHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHH
Q 019244 209 TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 286 (344)
Q Consensus 209 ~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~ 286 (344)
++.+..+..++||++|-|-+-. ++=..+.+.|..+++.+ ++||+--==|-+..++.++-++|||+|.+=-.+
T Consensus 65 dp~~iA~~~~~GA~aiSVLTd~----~~F~Gs~~~L~~vr~~v--~lPvLrKDFiid~yQI~eAr~~GADaILLI~a~ 136 (258)
T 4a29_A 65 DPIEYAKFMERYAVGLSITTEE----KYFNGSYETLRKIASSV--SIPILMSDFIVKESQIDDAYNLGADTVLLIVKI 136 (258)
T ss_dssp CHHHHHHHHTTTCSEEEEECCS----TTTCCCHHHHHHHHTTC--SSCEEEESCCCSHHHHHHHHHHTCSEEEEEGGG
T ss_pred CHHHHHHHHhCCCeEEEEeCCC----CCCCCCHHHHHHHHHhc--CCCEeeccccccHHHHHHHHHcCCCeeehHHhh
Confidence 4545445678999999885421 01112456777787766 799998778999999999999999999764433
|
| >1sjd_A N-acylamino acid racemase; lyase, isomerase; HET: NPG; 1.87A {Amycolatopsis SP} SCOP: c.1.11.2 d.54.1.1 PDB: 1sja_A* 1sjb_A* 1sjc_A* | Back alignment and structure |
|---|
Probab=85.09 E-value=24 Score=32.81 Aligned_cols=84 Identities=18% Similarity=0.114 Sum_probs=55.8
Q ss_pred CCcHHHHHHHHHhcCCcEEEEee-cCHHHHHHHHHcC-CcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecC
Q 019244 185 SLSWKDVKWLQTITKLPILVKGV-LTAEDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 262 (344)
Q Consensus 185 ~~~~~~i~~i~~~~~~PvivK~v-~~~~~a~~~~~~G-~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GG 262 (344)
..+|+..+++++.+++||..-+. .++++++.+++.| +|.|.+.-. .-+|......+..+++.. .++++..+.
T Consensus 219 ~~~~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~----~~GGit~~~~i~~~A~~~--g~~~~~~~~ 292 (368)
T 1sjd_A 219 EEDVLGHAELARRIQTPICLDESIVSARAAADAIKLGAVQIVNIKPG----RVGGYLEARRVHDVCAAH--GIPVWCGGM 292 (368)
T ss_dssp TTCHHHHHHHHTTCSSCEEESTTCCSHHHHHHHHHTTCCSEEEECTT----TTTSHHHHHHHHHHHHHT--TCCEEECCC
T ss_pred hhhHHHHHHHHHhCCCCEEECCCcCCHHHHHHHHHcCCCCEEEeccc----ccCCHHHHHHHHHHHHHc--CCcEEeCCc
Confidence 34788899999999999988775 5789999998877 788877421 112344333344444444 688877777
Q ss_pred CCCHHHHHHHHH
Q 019244 263 VRRGTDVFKALA 274 (344)
Q Consensus 263 Ir~g~dv~kala 274 (344)
..++.-..-++.
T Consensus 293 ~es~i~~aa~~h 304 (368)
T 1sjd_A 293 IETGLGRAANVA 304 (368)
T ss_dssp CCCHHHHHHHHH
T ss_pred cccHHHHHHHHH
Confidence 766655443333
|
| >1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics; HET: MSE; 1.75A {Neisseria meningitidis serogroup B} SCOP: c.1.12.8 PDB: 1o68_A* | Back alignment and structure |
|---|
Probab=84.84 E-value=13 Score=33.84 Aligned_cols=95 Identities=14% Similarity=0.149 Sum_probs=61.6
Q ss_pred cHHHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCC----CCCCchhhHHH----HHHHHHHccCCCcEE
Q 019244 187 SWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----QLDYVPATIMA----LEEVVKATQGRIPVF 258 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~----~~~~g~~~~~~----l~~i~~~~~~~~~vi 258 (344)
+...++++++. +-|+.+=.+-+.-.|+.+.++|+|.|.++...+- ..|.++-+++- ...+++.. ...+|+
T Consensus 5 t~~~lr~~k~~-g~~i~~~tayDa~sA~l~e~aG~d~ilvGdSl~~~~lG~~dt~~vTldemi~h~~aV~r~~-~~~~vv 82 (275)
T 1o66_A 5 TVNTLQKMKAA-GEKIAMLTAYESSFAALMDDAGVEMLLVGDSLGMAVQGRKSTLPVSLRDMCYHTECVARGA-KNAMIV 82 (275)
T ss_dssp CHHHHHHHHHH-TCCEEEEECCSHHHHHHHHHTTCCEEEECTTHHHHTTCCSSSTTCCHHHHHHHHHHHHHHC-SSSEEE
T ss_pred CHHHHHHHHhC-CCcEEEEeCcCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhhC-CCCeEE
Confidence 44456665553 5688887788899999999999999976432221 12344445443 23333333 246788
Q ss_pred EecCC----CCHHHHH----HHHHcCCCEEEEc
Q 019244 259 LDGGV----RRGTDVF----KALALGASGIFIG 283 (344)
Q Consensus 259 a~GGI----r~g~dv~----kalalGAd~V~ig 283 (344)
+|=+. .|..+++ +.+..||++|-+-
T Consensus 83 aD~pfgsy~~s~~~a~~na~rl~kaGa~aVklE 115 (275)
T 1o66_A 83 SDLPFGAYQQSKEQAFAAAAELMAAGAHMVKLE 115 (275)
T ss_dssp EECCTTSSSSCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred EECCCCCccCCHHHHHHHHHHHHHcCCcEEEEC
Confidence 98555 3577776 5777999999873
|
| >2poz_A Putative dehydratase; octamer, structural genomics, P protein structure initiative, NEW YORK SGX research center structural genomics, nysgxrc; 2.04A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=84.80 E-value=2.3 Score=40.47 Aligned_cols=87 Identities=16% Similarity=0.151 Sum_probs=64.3
Q ss_pred cHHHHHHHHHhc--CCcEEEEee--cCHHHH----HHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEE
Q 019244 187 SWKDVKWLQTIT--KLPILVKGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 258 (344)
Q Consensus 187 ~~~~i~~i~~~~--~~PvivK~v--~~~~~a----~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~vi 258 (344)
..+.++.+|+.+ ++++.+..- .+.+++ +.+.+.|+++|--- ..+..++.+.++++.. ++||+
T Consensus 185 ~~e~v~avr~a~G~d~~l~vD~n~~~~~~~a~~~~~~l~~~~i~~iE~P--------~~~~~~~~~~~l~~~~--~ipIa 254 (392)
T 2poz_A 185 AYRRVKAVRDAAGPEIELMVDLSGGLTTDETIRFCRKIGELDICFVEEP--------CDPFDNGALKVISEQI--PLPIA 254 (392)
T ss_dssp HHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHHGGGCEEEEECC--------SCTTCHHHHHHHHHHC--SSCEE
T ss_pred HHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCCEEECC--------CCcccHHHHHHHHhhC--CCCEE
Confidence 446788899877 588888753 466664 44566787776421 1123577788887776 79999
Q ss_pred EecCCCCHHHHHHHHHcC-CCEEEEc
Q 019244 259 LDGGVRRGTDVFKALALG-ASGIFIG 283 (344)
Q Consensus 259 a~GGIr~g~dv~kalalG-Ad~V~ig 283 (344)
+++.+.+..++.+++..| +|.|++-
T Consensus 255 ~dE~~~~~~~~~~~i~~~~~d~v~ik 280 (392)
T 2poz_A 255 VGERVYTRFGFRKIFELQACGIIQPD 280 (392)
T ss_dssp ECTTCCHHHHHHHHHTTTCCSEECCC
T ss_pred ecCCcCCHHHHHHHHHcCCCCEEecC
Confidence 999999999999999987 7888874
|
| >1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1 | Back alignment and structure |
|---|
Probab=84.80 E-value=0.74 Score=39.56 Aligned_cols=44 Identities=20% Similarity=0.440 Sum_probs=38.4
Q ss_pred CCcHHHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEcc
Q 019244 185 SLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSN 228 (344)
Q Consensus 185 ~~~~~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~ 228 (344)
.+.|+.++++++..++|+++-+..+++++..+.++|+|++.++.
T Consensus 148 ~~~~~~l~~l~~~~~~pvia~GGI~~~nv~~~~~~Ga~gv~vgs 191 (215)
T 1xi3_A 148 VIGLEGLRKIVESVKIPVVAIGGINKDNAREVLKTGVDGIAVIS 191 (215)
T ss_dssp CCHHHHHHHHHHHCSSCEEEESSCCTTTHHHHHTTTCSEEEESH
T ss_pred CcCHHHHHHHHHhCCCCEEEECCcCHHHHHHHHHcCCCEEEEhH
Confidence 45788999999888999999887779999999999999999853
|
| >1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus} | Back alignment and structure |
|---|
Probab=84.78 E-value=17 Score=33.65 Aligned_cols=91 Identities=24% Similarity=0.307 Sum_probs=61.2
Q ss_pred HHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCC-C-C---CCCCchhhHH----HHHHHHHHccCCCcEEEec
Q 019244 191 VKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHG-A-R---QLDYVPATIM----ALEEVVKATQGRIPVFLDG 261 (344)
Q Consensus 191 i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~g-G-~---~~~~g~~~~~----~l~~i~~~~~~~~~via~G 261 (344)
++++.+. +-|+.+=++.+.-.|+.+.++|+|+|.+++.+ + . ..|.++-+++ .+..|.+..+ ++||++|.
T Consensus 31 lr~l~~~-~~~i~~~~ayD~~sA~i~e~aGfdai~vs~~~~a~~~lG~pD~~~vt~~em~~~~~~I~r~~~-~~PviaD~ 108 (318)
T 1zlp_A 31 MHRLIEE-HGSVLMPGVQDALSAAVVEKTGFHAAFVSGYSVSAAMLGLPDFGLLTTTEVVEATRRITAAAP-NLCVVVDG 108 (318)
T ss_dssp HHHHHHH-SSSEEEEEECSHHHHHHHHHTTCSEEEECHHHHHHHHHCCCSSSCSCHHHHHHHHHHHHHHSS-SSEEEEEC
T ss_pred HHHHHhC-CCcEEEecCCCHHHHHHHHHcCCCEEEECcHHHhhHhcCCCCCCCCCHHHHHHHHHHHHhhcc-CCCEEEeC
Confidence 4444443 56888888899999999999999999998731 1 0 1344444443 3344444442 79999986
Q ss_pred --CCCCHHHHH----HHHHcCCCEEEEc
Q 019244 262 --GVRRGTDVF----KALALGASGIFIG 283 (344)
Q Consensus 262 --GIr~g~dv~----kalalGAd~V~ig 283 (344)
|..+..++. +.+..||.+|-+-
T Consensus 109 d~Gyg~~~~v~~tv~~l~~aGaagv~iE 136 (318)
T 1zlp_A 109 DTGGGGPLNVQRFIRELISAGAKGVFLE 136 (318)
T ss_dssp TTCSSSHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEEEC
Confidence 555666554 4556899999874
|
| >2ox4_A Putative mandelate racemase; enolase, dehydratase, structural genomics, protein structure initiative, PSI, nysgrc; 1.80A {Zymomonas mobilis} | Back alignment and structure |
|---|
Probab=84.40 E-value=2.2 Score=40.66 Aligned_cols=88 Identities=14% Similarity=0.009 Sum_probs=64.7
Q ss_pred cHHHHHHHHHhc--CCcEEEEee--cCHHHH----HHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEE
Q 019244 187 SWKDVKWLQTIT--KLPILVKGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 258 (344)
Q Consensus 187 ~~~~i~~i~~~~--~~PvivK~v--~~~~~a----~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~vi 258 (344)
..+.++.+|+.+ ++++.+..- .+.+++ +.+.+.|+++|--- ..+..++.+.++++.+ ++||+
T Consensus 195 ~~e~v~avr~avG~d~~l~vDan~~~~~~~ai~~~~~l~~~~i~~iE~P--------~~~~d~~~~~~l~~~~--~iPIa 264 (403)
T 2ox4_A 195 GVERVEAIRNAVGPDVDIIVENHGHTDLVSAIQFAKAIEEFNIFFYEEI--------NTPLNPRLLKEAKKKI--DIPLA 264 (403)
T ss_dssp HHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHHGGGCEEEEECC--------SCTTSTHHHHHHHHTC--CSCEE
T ss_pred HHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhhCCCEEeCC--------CChhhHHHHHHHHHhC--CCCEE
Confidence 446788899877 588888753 466654 45566787776421 1123567777777766 79999
Q ss_pred EecCCCCHHHHHHHHHcC-CCEEEEch
Q 019244 259 LDGGVRRGTDVFKALALG-ASGIFIGR 284 (344)
Q Consensus 259 a~GGIr~g~dv~kalalG-Ad~V~ig~ 284 (344)
+++.+.+..++.+++..| +|.|++--
T Consensus 265 ~dE~~~~~~~~~~~i~~~~~d~v~ik~ 291 (403)
T 2ox4_A 265 SGERIYSRWGFLPFLEDRSIDVIQPDL 291 (403)
T ss_dssp ECTTCCHHHHHHHHHHTTCCSEECCCH
T ss_pred ecCCcCCHHHHHHHHHcCCCCEEecCc
Confidence 999999999999999987 79998854
|
| >1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A* | Back alignment and structure |
|---|
Probab=84.39 E-value=0.97 Score=39.28 Aligned_cols=44 Identities=25% Similarity=0.308 Sum_probs=37.9
Q ss_pred CCcHHHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEcc
Q 019244 185 SLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSN 228 (344)
Q Consensus 185 ~~~~~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~ 228 (344)
.+.|+.++++++..++|+++=+..+++++..+.++|+++|.++.
T Consensus 150 ~~~~~~l~~~~~~~~~pvia~GGI~~~nv~~~~~~Ga~gv~vgs 193 (221)
T 1yad_A 150 GRGVSLLSDIKQRISIPVIAIGGMTPDRLRDVKQAGADGIAVMS 193 (221)
T ss_dssp -CHHHHHHHHHHHCCSCEEEESSCCGGGHHHHHHTTCSEEEESH
T ss_pred CCCHHHHHHHHHhCCCCEEEECCCCHHHHHHHHHcCCCEEEEhH
Confidence 45788899999888999988776799999999999999999953
|
| >3fok_A Uncharacterized protein CGL0159; CGL0159 ,brevibacterium flavum., structural genomics, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=84.35 E-value=1.5 Score=40.57 Aligned_cols=79 Identities=29% Similarity=0.539 Sum_probs=55.1
Q ss_pred HhcCCcEEEE-------e--e---cCHHH----HHHHHHcCCc----EEEEccCCCCCCCCchhhHHHHHHHHHHccCCC
Q 019244 196 TITKLPILVK-------G--V---LTAED----ARIAVQAGAA----GIIVSNHGARQLDYVPATIMALEEVVKATQGRI 255 (344)
Q Consensus 196 ~~~~~PvivK-------~--v---~~~~~----a~~~~~~G~d----~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~ 255 (344)
..+++|+++= + + .+++. ++.+.+.|+| .|++-- + +.+.++.+.. .+
T Consensus 173 ~~~GlP~~~ep~~y~r~gg~v~~~~dp~~Va~aaRiAaELGADs~~tivK~~y-----------~-e~f~~Vv~a~--~v 238 (307)
T 3fok_A 173 AAAQLPIMLEPFMSNWVNGKVVNDLSTDAVIQSVAIAAGLGNDSSYTWMKLPV-----------V-EEMERVMEST--TM 238 (307)
T ss_dssp HHTTCCEEEEEEEEEEETTEEEECCSHHHHHHHHHHHHTCSSCCSSEEEEEEC-----------C-TTHHHHGGGC--SS
T ss_pred HHcCCcEEEEeeccccCCCCcCCCCCHHHHHHHHHHHHHhCCCcCCCEEEeCC-----------c-HHHHHHHHhC--CC
Confidence 3468998763 0 1 34443 5778899999 998821 1 3456666555 69
Q ss_pred cEEEecCCCC--HHHHH----HHHH-cCCCEEEEchHHHH
Q 019244 256 PVFLDGGVRR--GTDVF----KALA-LGASGIFIGRPVVY 288 (344)
Q Consensus 256 ~via~GGIr~--g~dv~----kala-lGAd~V~ig~~~l~ 288 (344)
|++..||=.+ ..+++ +++. .||..+.+||-+++
T Consensus 239 PVViaGG~k~~~~~e~L~~v~~A~~~aGa~Gv~vGRNIfQ 278 (307)
T 3fok_A 239 PTLLLGGEGGNDPDATFASWEHALTLPGVRGLTVGRTLLY 278 (307)
T ss_dssp CEEEECCSCC--CHHHHHHHHHHTTSTTEEEEEECTTTSS
T ss_pred CEEEeCCCCCCCHHHHHHHHHHHHHhCCCeEEeechhhcc
Confidence 9999998874 45555 5667 59999999998875
|
| >3fa4_A 2,3-dimethylmalate lyase; alpha/beta barrel, helix swapping; 2.18A {Aspergillus niger} PDB: 3fa3_A | Back alignment and structure |
|---|
Probab=84.26 E-value=4.6 Score=37.26 Aligned_cols=67 Identities=18% Similarity=0.148 Sum_probs=45.5
Q ss_pred HHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEe---cCCCCHHHHHHHHHcCCCEEEEchHHHHH
Q 019244 213 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD---GGVRRGTDVFKALALGASGIFIGRPVVYS 289 (344)
Q Consensus 213 a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~---GGIr~g~dv~kalalGAd~V~ig~~~l~~ 289 (344)
++...++|+|.|-+- ++.+.+.+.++.+.++ ..|+.++ +|-.....+.+.-.+|.+.|..+..++.+
T Consensus 176 a~ay~eAGAD~ifi~---------g~~~~~ei~~~~~~~~-~~Pl~~n~~~~g~~p~~~~~eL~~lGv~~v~~~~~~~ra 245 (302)
T 3fa4_A 176 LRAARDAGADVGFLE---------GITSREMARQVIQDLA-GWPLLLNMVEHGATPSISAAEAKEMGFRIIIFPFAALGP 245 (302)
T ss_dssp HHHHHTTTCSEEEET---------TCCCHHHHHHHHHHTT-TSCEEEECCTTSSSCCCCHHHHHHHTCSEEEETTTTHHH
T ss_pred HHHHHHcCCCEEeec---------CCCCHHHHHHHHHHhc-CCceeEEEecCCCCCCCCHHHHHHcCCCEEEEchHHHHH
Confidence 566789999999883 2345667777777763 4787663 33222223445566899999999887764
|
| >1rvg_A Fructose-1,6-bisphosphate aldolase; class II aldolase, metal-depdendent aldolase, lyase; 2.00A {Thermus aquaticus} SCOP: c.1.10.2 PDB: 1rv8_A 2fjk_A* | Back alignment and structure |
|---|
Probab=84.26 E-value=9.8 Score=35.10 Aligned_cols=45 Identities=18% Similarity=0.321 Sum_probs=33.1
Q ss_pred CCCCcHHHHHHHHHhcCCcEEEEeec-----------------------CHHHHHHHHHcCCcEEEEc
Q 019244 183 DRSLSWKDVKWLQTITKLPILVKGVL-----------------------TAEDARIAVQAGAAGIIVS 227 (344)
Q Consensus 183 ~~~~~~~~i~~i~~~~~~PvivK~v~-----------------------~~~~a~~~~~~G~d~I~v~ 227 (344)
.+.++++.+++|++.+++|+++-+.. +.++.+++++.|+.-|-++
T Consensus 186 ~p~L~~~~L~~I~~~~~vpLVlHGgSsv~~~~~~~~~~~gg~~~~~~G~p~e~i~~ai~~GV~KiNi~ 253 (305)
T 1rvg_A 186 RPFIDHARLERIARLVPAPLVLHGASAVPPELVERFRASGGEIGEAAGIHPEDIKKAISLGIAKINTD 253 (305)
T ss_dssp SCCCCHHHHHHHHHHCCSCEEECSCCCCCHHHHHHHHHTTCCCCSCBCCCHHHHHHHHHTTEEEEEEC
T ss_pred CCccCHHHHHHHHHhcCCCEEEeCCCCCcHHHHHHHHhhccccccCCCCCHHHHHHHHHCCCeEEEEC
Confidence 34567888999999889999988765 3466667777776666653
|
| >3n9r_A Fructose-bisphosphate aldolase; FBP aldolase, class II, inhibitor, lyase; HET: TD3; 1.80A {Helicobacter pylori} SCOP: c.1.10.0 PDB: 3c52_A* 3c56_A* 3c4u_A* 3n9s_A* | Back alignment and structure |
|---|
Probab=84.04 E-value=23 Score=32.63 Aligned_cols=110 Identities=20% Similarity=0.198 Sum_probs=71.6
Q ss_pred cCHHHHHHHH-HcCCcEEEEcc---CCCCCCCCch-hhHHHHHHHHHHccCCCcEEEecCC-------------------
Q 019244 208 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGV------------------- 263 (344)
Q Consensus 208 ~~~~~a~~~~-~~G~d~I~v~~---~gG~~~~~g~-~~~~~l~~i~~~~~~~~~via~GGI------------------- 263 (344)
.+|++|.... +.|+|.+-++- ||-+...+.| -.++.|.+|.+.. ++|+..=||=
T Consensus 155 T~Peea~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~Ld~~~L~~I~~~~--~~PLVlHGgS~vp~~~~~~~~~~gg~~~~ 232 (307)
T 3n9r_A 155 VNPKEAEQFVKESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLT--NIPLVLHGASAIPDNVRKSYLDAGGDLKG 232 (307)
T ss_dssp CCHHHHHHHHHHHCCSEEEECSSCCSSSBCCSSSCCCCHHHHHHHHHHH--CSCEEESSCCCCCHHHHHHHHHTTCCCTT
T ss_pred CCHHHHHHHHHHHCCCEEEEecCCcccccCCCCCCccCHHHHHHHHhcC--CCCeEEeCCCCcchHHHHHHHHhcCccCC
Confidence 5688887754 69999999873 5543211222 2567788886554 6999997743
Q ss_pred ---CCHHHHHHHHHcCCCEEEEchHHHHHhhh-------cCh------HHHHHHHHHHHHHHHHHHHHhCCC
Q 019244 264 ---RRGTDVFKALALGASGIFIGRPVVYSLAA-------EGE------KGVRRVLEMLREEFELAMALSGCR 319 (344)
Q Consensus 264 ---r~g~dv~kalalGAd~V~ig~~~l~~~~~-------~G~------~~v~~~l~~l~~el~~~m~~~G~~ 319 (344)
-.-+++.|++.+|..=|-+++-+.++... ... .-+....+.+++.++..|..+|+.
T Consensus 233 ~~G~p~e~i~~ai~~GV~KiNi~Tdl~~a~~~~vr~~~~~~~~~~dpr~~~~~~~~a~~~~v~~~~~~~gs~ 304 (307)
T 3n9r_A 233 SKGVPFEFLQESVKGGINKVNTDTDLRIAFIAEVRKVANEDKSQFDLRKFFSPAQLALKNVVKERMKLLGSA 304 (307)
T ss_dssp CBCCCHHHHHHHHHTTEEEEEECHHHHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred CCCCCHHHHHHHHHcCceEEEechHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 23678889999999999999977654321 010 112233345666777777777764
|
| >1m3u_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; beta-alpha-barrel, TIM-barrel, ketopantoate, selenomethionin decamer; HET: KPL; 1.80A {Escherichia coli} SCOP: c.1.12.8 | Back alignment and structure |
|---|
Probab=83.70 E-value=12 Score=33.87 Aligned_cols=95 Identities=13% Similarity=0.087 Sum_probs=62.8
Q ss_pred cHHHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCC----CCCCchhhHHH----HHHHHHHccCCCcEE
Q 019244 187 SWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----QLDYVPATIMA----LEEVVKATQGRIPVF 258 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~----~~~~g~~~~~~----l~~i~~~~~~~~~vi 258 (344)
+...++++++. +-|+.+=.+-+.-.|+.+.++|+|.|.++...+- ..|.++-+++- ...+++.. ...+|+
T Consensus 5 t~~~lr~~k~~-g~~i~~~tayD~~sA~l~e~aG~d~ilvGdsl~~~~lG~~dt~~vtldemi~h~~aV~r~~-~~~~vv 82 (264)
T 1m3u_A 5 TISLLQKYKQE-KKRFATITAYDYSFAKLFADEGLNVMLVGDSLGMTVQGHDSTLPVTVADIAYHTAAVRRGA-PNCLLL 82 (264)
T ss_dssp CHHHHHHHHHH-TCCEEEEECCSHHHHHHHHHHTCCEEEECTTHHHHTTCCSSSTTCCHHHHHHHHHHHHHHC-TTSEEE
T ss_pred CHHHHHHHHHC-CCcEEEEeCcCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhhC-CCCcEE
Confidence 44456665553 5688887788899999999999999999432221 12344445443 23333333 246788
Q ss_pred EecCCC---CHHHHH----HHHHcCCCEEEEc
Q 019244 259 LDGGVR---RGTDVF----KALALGASGIFIG 283 (344)
Q Consensus 259 a~GGIr---~g~dv~----kalalGAd~V~ig 283 (344)
+|-+.. |..+++ +.+..||++|-+-
T Consensus 83 aD~pfgsy~~~~~a~~~a~rl~kaGa~aVklE 114 (264)
T 1m3u_A 83 ADLPFMAYATPEQAFENAATVMRAGANMVKIE 114 (264)
T ss_dssp EECCTTSSSSHHHHHHHHHHHHHTTCSEEECC
T ss_pred EECCCCCcCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 887665 777777 4777999999873
|
| >3gd6_A Muconate cycloisomerase; structural genomics, NYSGXRC, target 9375A, divergent enolase, lyase, PSI-2; 1.60A {Oceanobacillus iheyensis HTE831} PDB: 2oqy_A 3es8_A 3es7_A 3fyy_A 3hpf_A* | Back alignment and structure |
|---|
Probab=83.69 E-value=9.9 Score=36.07 Aligned_cols=126 Identities=13% Similarity=0.030 Sum_probs=0.0
Q ss_pred HHHHcCCcc------------------c----cCCHHHHHHHHHHHHHcCCcEEEeccCCccccccHHHHHhhcCCCCcc
Q 019244 96 AASAAGTIM------------------V----YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFL 153 (344)
Q Consensus 96 aA~~~g~~~------------------~----~~d~~~~~~~i~~a~~ag~~~l~~tvd~~~~g~r~~~~~~~~~~~~g~ 153 (344)
.++.+|.|. . ..+++...+.++++.+.||+++-+.+.
T Consensus 108 ~gK~~g~Pl~~LLGg~~r~~v~~y~t~~~~~~~~~~e~~~~~a~~~~~~G~~~~KiKvG--------------------- 166 (391)
T 3gd6_A 108 CAKYLDISVSDFLGGRVKEKIKVCYPIFRHRFSEEVESNLDVVRQKLEQGFDVFRLYVG--------------------- 166 (391)
T ss_dssp HHHHHTSBHHHHTTCCSCSEEEBCEEECCCSSTTHHHHHHHHHHHHHHTTCCEEEEECS---------------------
T ss_pred HhcccCCcHHHHhCCCcCCeEEeeEEecccccCCCHHHHHHHHHHHHHcCCCEEEEeeC---------------------
Q ss_pred cccccccccccccccccchhhHHHHhhcCCCCCcHHHHHHHHHhc--CCcEE-EEee--cCHHH----HHHHHHcCC--c
Q 019244 154 TLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTIT--KLPIL-VKGV--LTAED----ARIAVQAGA--A 222 (344)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~--~~Pvi-vK~v--~~~~~----a~~~~~~G~--d 222 (344)
.+...+.+.++.+|+.+ +.++. +..- .++++ ++.+.+.|+ +
T Consensus 167 ----------------------------~~~~~d~~~v~avR~a~g~~~~l~~vDan~~~~~~~A~~~~~~l~~~~i~~~ 218 (391)
T 3gd6_A 167 ----------------------------KNLDADEEFLSRVKEEFGSRVRIKSYDFSHLLNWKDAHRAIKRLTKYDLGLE 218 (391)
T ss_dssp ----------------------------SCHHHHHHHHHHHHHHHGGGCEEEEEECTTCSCHHHHHHHHHHHTTCCSSCC
T ss_pred ----------------------------CCHHHHHHHHHHHHHHcCCCCcEEEecCCCCcCHHHHHHHHHHHHhcCCCcc
Q ss_pred EEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcC-CCEEEE
Q 019244 223 GIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFI 282 (344)
Q Consensus 223 ~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalG-Ad~V~i 282 (344)
+| .....+..++.+.++++.. .+|| +..+.+..|+.+++..| +|.|++
T Consensus 219 ~i--------EqP~~~~d~~~~~~l~~~~--~iPI--dE~~~~~~~~~~~~~~~~~d~v~~ 267 (391)
T 3gd6_A 219 MI--------ESPAPRNDFDGLYQLRLKT--DYPI--SEHVWSFKQQQEMIKKDAIDIFNI 267 (391)
T ss_dssp EE--------ECCSCTTCHHHHHHHHHHC--SSCE--EEECCCHHHHHHHHHHTCCSEEEE
T ss_pred ee--------cCCCChhhHHHHHHHHHHc--CCCc--CCCCCCHHHHHHHHHcCCCCEEEE
|
| >1o60_A 2-dehydro-3-deoxyphosphooctonate aldolase; structural genomics, transferase; 1.80A {Haemophilus influenzae} SCOP: c.1.10.4 PDB: 3e9a_A | Back alignment and structure |
|---|
Probab=83.68 E-value=3.6 Score=37.76 Aligned_cols=97 Identities=23% Similarity=0.325 Sum_probs=57.5
Q ss_pred cHHHHHHHHHhcCCcEEEEeec--CHHHH----HHHHHcCCcEEEEccCCCCCCCCch--hhHHHHHHHHHHccCCCcEE
Q 019244 187 SWKDVKWLQTITKLPILVKGVL--TAEDA----RIAVQAGAAGIIVSNHGARQLDYVP--ATIMALEEVVKATQGRIPVF 258 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v~--~~~~a----~~~~~~G~d~I~v~~~gG~~~~~g~--~~~~~l~~i~~~~~~~~~vi 258 (344)
+.+.++++. .+++||++|..+ ++++. ..+...|.+-+.+.-.|++ ..... ..+..++.+++.. ..+||+
T Consensus 121 n~~Ll~~~a-~~~kPV~lk~G~~~t~~ei~~Av~~i~~~Gn~~i~L~~rg~~-~~y~~~~~dl~~i~~lk~~~-~~~pV~ 197 (292)
T 1o60_A 121 QTDLVEAMA-KTGAVINVKKPQFLSPSQMGNIVEKIEECGNDKIILCDRGTN-FGYDNLIVDMLGFSVMKKAS-KGSPVI 197 (292)
T ss_dssp CHHHHHHHH-HTTCEEEEECCTTSCGGGHHHHHHHHHHTTCCCEEEEECCEE-CSTTCEECCTTHHHHHHHHT-TSCCEE
T ss_pred CHHHHHHHH-cCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCC-CCCCccccCHHHHHHHHhhC-CCCCEE
Confidence 456788877 469999999874 55553 4456788766666544432 11111 2344555555543 258999
Q ss_pred Eec-----------CCCCH-----HHHH-HHHHcCCCEEEEchHH
Q 019244 259 LDG-----------GVRRG-----TDVF-KALALGASGIFIGRPV 286 (344)
Q Consensus 259 a~G-----------GIr~g-----~dv~-kalalGAd~V~ig~~~ 286 (344)
.|. +-..+ ..+. .++++||++++|-+-+
T Consensus 198 ~D~sH~~q~p~~~~~~~~g~~~~~~~ia~aAva~Ga~Gl~IE~H~ 242 (292)
T 1o60_A 198 FDVTHSLQCRDPFGAASSGRRAQVTELARSGLAVGIAGLFLEAHP 242 (292)
T ss_dssp EEHHHHCC------------CTTHHHHHHHHHHHCCSEEEEEEES
T ss_pred EECCCcccccCccccCCCCChhHHHHHHHHHHHcCCCEEEEEecC
Confidence 942 22233 2343 6678999999999865
|
| >3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A* | Back alignment and structure |
|---|
Probab=83.51 E-value=4.7 Score=35.62 Aligned_cols=41 Identities=22% Similarity=0.191 Sum_probs=34.3
Q ss_pred cHHHHHHHHHhc-----CCcEEEEeecCHHHHHHHHHcCCcEEEEc
Q 019244 187 SWKDVKWLQTIT-----KLPILVKGVLTAEDARIAVQAGAAGIIVS 227 (344)
Q Consensus 187 ~~~~i~~i~~~~-----~~PvivK~v~~~~~a~~~~~~G~d~I~v~ 227 (344)
.++.|+++|+.. ++++.|-+..+++.+..+.++|||.++++
T Consensus 150 ~l~kI~~lr~~~~~~~~~~~I~VdGGI~~~~~~~~~~aGAd~~V~G 195 (231)
T 3ctl_A 150 MLDKLAELKAWREREGLEYEIEVDGSCNQATYEKLMAAGADVFIVG 195 (231)
T ss_dssp HHHHHHHHHHHHHHHTCCCEEEEESCCSTTTHHHHHHHTCCEEEEC
T ss_pred HHHHHHHHHHHHhccCCCceEEEECCcCHHHHHHHHHcCCCEEEEc
Confidence 466777777665 57888888889999999999999999985
|
| >3fa4_A 2,3-dimethylmalate lyase; alpha/beta barrel, helix swapping; 2.18A {Aspergillus niger} PDB: 3fa3_A | Back alignment and structure |
|---|
Probab=83.40 E-value=9.7 Score=35.07 Aligned_cols=95 Identities=21% Similarity=0.218 Sum_probs=60.3
Q ss_pred HHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCC-C---C-CCCCchhhHH-HHHHHHHHcc--CCCcEEEec
Q 019244 190 DVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHG-A---R-QLDYVPATIM-ALEEVVKATQ--GRIPVFLDG 261 (344)
Q Consensus 190 ~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~g-G---~-~~~~g~~~~~-~l~~i~~~~~--~~~~via~G 261 (344)
.++++...-+.|+++=++-+.-.|+.+.++|+++|.+|+.+ + . ..|.++-+++ .+..++...+ .++||++|.
T Consensus 8 ~Lr~ll~~~~~~i~~~~a~D~~sA~l~e~aGf~ai~vsG~~~a~~~~G~pD~~~vt~~em~~~~~~I~~~~~~~PviaD~ 87 (302)
T 3fa4_A 8 SLRRALENPDSFIVAPGVYDGLSARVALSAGFDALYMTGAGTAASVHGQADLGICTLNDMRANAEMISNISPSTPVIADA 87 (302)
T ss_dssp HHHHHHHSTTCCEEEEEECSHHHHHHHHTTTCSCEEECHHHHHHHHHSCCSSSCCCHHHHHHHHHHHHTTSTTSCEEEEC
T ss_pred HHHHHHhCCCCeEEEecCcCHHHHHHHHHcCCCEEEeCcHHHHHHHcCCCCCCcCCHHHHHHHHHHHHhhccCCCEEEEC
Confidence 34555443345777778889999999999999999997531 1 0 1344444443 3333332222 279999987
Q ss_pred --CCCCHHHHH----HHHHcCCCEEEEch
Q 019244 262 --GVRRGTDVF----KALALGASGIFIGR 284 (344)
Q Consensus 262 --GIr~g~dv~----kalalGAd~V~ig~ 284 (344)
|..+..++. +....||.+|-+--
T Consensus 88 d~Gyg~~~~v~~tv~~l~~aGaagv~iED 116 (302)
T 3fa4_A 88 DTGYGGPIMVARTTEQYSRSGVAAFHIED 116 (302)
T ss_dssp TTTTSSHHHHHHHHHHHHHTTCCEEEECS
T ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEEECC
Confidence 555555544 34458999997754
|
| >2gdq_A YITF; mandelate racemase/muconate lactonizing enzyme, TIM-barrel, octamer, structural genomics, PSI; 1.80A {Bacillus subtilis subsp} SCOP: c.1.11.2 d.54.1.1 PDB: 2gge_A | Back alignment and structure |
|---|
Probab=83.36 E-value=2.8 Score=39.72 Aligned_cols=87 Identities=10% Similarity=0.019 Sum_probs=63.4
Q ss_pred cHHHHHHHHHhc--CCcEEEEee--cCHHHH----HHHHHc-CCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcE
Q 019244 187 SWKDVKWLQTIT--KLPILVKGV--LTAEDA----RIAVQA-GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 257 (344)
Q Consensus 187 ~~~~i~~i~~~~--~~PvivK~v--~~~~~a----~~~~~~-G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~v 257 (344)
..+.++.+|+.+ ++++.+..- .+.+++ +.+.+. |+++|--- ..+..++.+.++++.. ++||
T Consensus 170 d~e~v~avR~a~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~~i~~iEqP--------~~~~d~~~~~~l~~~~--~iPI 239 (382)
T 2gdq_A 170 DVRHINALQHTAGSSITMILDANQSYDAAAAFKWERYFSEWTNIGWLEEP--------LPFDQPQDYAMLRSRL--SVPV 239 (382)
T ss_dssp HHHHHHHHHHHHCTTSEEEEECTTCCCHHHHHTTHHHHTTCSCEEEEECC--------SCSSCHHHHHHHHTTC--SSCE
T ss_pred HHHHHHHHHHhhCCCCEEEEECCCCCCHHHHHHHHHHHhhccCCeEEECC--------CCcccHHHHHHHHhhC--CCCE
Confidence 446789999887 588888753 466665 445566 77766411 1123567777777655 7999
Q ss_pred EEecCCCCHHHHHHHHHcC-CCEEEEc
Q 019244 258 FLDGGVRRGTDVFKALALG-ASGIFIG 283 (344)
Q Consensus 258 ia~GGIr~g~dv~kalalG-Ad~V~ig 283 (344)
++++.+.+..|+.+++..| +|.|++-
T Consensus 240 a~dE~~~~~~~~~~~i~~~~~d~v~ik 266 (382)
T 2gdq_A 240 AGGENMKGPAQYVPLLSQRCLDIIQPD 266 (382)
T ss_dssp EECTTCCSHHHHHHHHHTTCCSEECCC
T ss_pred EecCCcCCHHHHHHHHHcCCCCEEecC
Confidence 9999999999999999987 7988874
|
| >3lye_A Oxaloacetate acetyl hydrolase; (alpha/beta)8 barrel; 1.30A {Cryphonectria parasitica} PDB: 3m0j_A* 3m0k_A | Back alignment and structure |
|---|
Probab=83.35 E-value=8.5 Score=35.55 Aligned_cols=96 Identities=21% Similarity=0.229 Sum_probs=60.9
Q ss_pred HHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCC-C---C-CCCCchhhHHH-HHHHHHHcc--C-CCcEEE
Q 019244 189 KDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHG-A---R-QLDYVPATIMA-LEEVVKATQ--G-RIPVFL 259 (344)
Q Consensus 189 ~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~g-G---~-~~~~g~~~~~~-l~~i~~~~~--~-~~~via 259 (344)
..++++...-+.|+++=++.+.-.|+.+.++|+|+|.+|+.+ + . ..|.++-+++. +..++...+ . ++||++
T Consensus 14 ~~lr~ll~~~~~~i~~~~a~D~~sA~l~e~aGf~ai~vsG~~~a~s~~G~pD~~~vt~~em~~~~~~i~r~~~~~~Pvia 93 (307)
T 3lye_A 14 KKLRHLLENTDELIVCPGVYDGLSARTAMELGFKSLYMTGAGTTASRLGQPDLAIAQLHDMRDNADMIANLDPFGPPLIA 93 (307)
T ss_dssp HHHHHHHHHCCCCEEEEEECSHHHHHHHHHTTCSCEEECHHHHHHHHHCCCSSSCSCHHHHHHHHHHHHTSSTTSCCEEE
T ss_pred HHHHHHHhCCCCeEEEecCcCHHHHHHHHHcCCCEEEeccHHHHHHhcCCCCCCCCCHHHHHHHHHhhhccCCCCCcEEE
Confidence 345555444346787878889999999999999999997532 1 0 13445444433 333332222 2 499999
Q ss_pred ec--CCCCHHHHH----HHHHcCCCEEEEch
Q 019244 260 DG--GVRRGTDVF----KALALGASGIFIGR 284 (344)
Q Consensus 260 ~G--GIr~g~dv~----kalalGAd~V~ig~ 284 (344)
|. |..+..++. +....||.+|-+--
T Consensus 94 D~d~Gyg~~~~v~~~v~~l~~aGaagv~iED 124 (307)
T 3lye_A 94 DMDTGYGGPIMVARTVEHYIRSGVAGAHLED 124 (307)
T ss_dssp ECTTCSSSHHHHHHHHHHHHHTTCCEEEECC
T ss_pred ECCCCCCCHHHHHHHHHHHHHcCCeEEEEcC
Confidence 76 555555544 34558999997753
|
| >3v3w_A Starvation sensing protein RSPA; enolase, enzyme function initiative, EFI, lyase; HET: NHE; 1.40A {Cellvibrio japonicus} PDB: 3v4b_A* 4f4r_A 3qkf_A* 3qke_A* 3p93_A* 3ow1_A 3pk7_A* 3rgt_A* 3bsm_A | Back alignment and structure |
|---|
Probab=83.34 E-value=2.2 Score=41.17 Aligned_cols=88 Identities=9% Similarity=-0.099 Sum_probs=65.2
Q ss_pred cHHHHHHHHHhc--CCcEEEEee--cCHHHH----HHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEE
Q 019244 187 SWKDVKWLQTIT--KLPILVKGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 258 (344)
Q Consensus 187 ~~~~i~~i~~~~--~~PvivK~v--~~~~~a----~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~vi 258 (344)
..+.++.+|+.+ +.++.+..- .+.++| +.+.+.|+++|---- .+..++.+.++++.. .+||+
T Consensus 212 d~e~v~avR~avG~d~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iEqP~--------~~~d~~~~~~l~~~~--~iPIa 281 (424)
T 3v3w_A 212 IPDVFAAVRKEFGPDIHLLHDVHHRLTPIEAARLGKALEPYHLFWMEDAV--------PAENQESFKLIRQHT--TTPLA 281 (424)
T ss_dssp HHHHHHHHHHHHCSSSEEEEECTTCCCHHHHHHHHHHHGGGCCSEEECCS--------CCSSTTHHHHHHHHC--CSCEE
T ss_pred HHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCEEECCC--------ChHhHHHHHHHHhhC--CCCEE
Confidence 345689999987 578888753 466664 556678888885211 112455677777766 79999
Q ss_pred EecCCCCHHHHHHHHHcC-CCEEEEch
Q 019244 259 LDGGVRRGTDVFKALALG-ASGIFIGR 284 (344)
Q Consensus 259 a~GGIr~g~dv~kalalG-Ad~V~ig~ 284 (344)
+++.+.+..|+.+++..| +|.|++--
T Consensus 282 ~dE~~~~~~~~~~~i~~ga~d~v~~k~ 308 (424)
T 3v3w_A 282 VGEVFNSIHDCRELIQNQWIDYIRTTI 308 (424)
T ss_dssp ECTTCCSGGGTHHHHHTTCCSEECCCT
T ss_pred EccCcCCHHHHHHHHHcCCCCeEeecc
Confidence 999999999999999988 78888764
|
| >3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A* | Back alignment and structure |
|---|
Probab=83.29 E-value=7.4 Score=36.68 Aligned_cols=91 Identities=16% Similarity=0.190 Sum_probs=61.9
Q ss_pred HHHHHHhc-CCcEEEEee------cCHHHHHHHHHcCCcEEEEcc----CCCCCCC------------------------
Q 019244 191 VKWLQTIT-KLPILVKGV------LTAEDARIAVQAGAAGIIVSN----HGARQLD------------------------ 235 (344)
Q Consensus 191 i~~i~~~~-~~PvivK~v------~~~~~a~~~~~~G~d~I~v~~----~gG~~~~------------------------ 235 (344)
++++.+.. +.|.+..+- .+.+..+++.++|+++|++.- .|-|..|
T Consensus 112 ~e~v~~~~~~~~~wfQlY~~~d~~~~~~l~~ra~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~ 191 (352)
T 3sgz_A 112 LEDIVAAAPEGFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVLGNRRRDKRNQLNLEANILKAALRALKEEKP 191 (352)
T ss_dssp HHHHHHHSTTCEEEEECCCCSCHHHHHHHHHHHHHTTCCCEEEECSCSSCCCCHHHHHHHHHSCHHHHTTCC--------
T ss_pred HHHHHHhccCccceeccccCCCHHHHHHHHHHHHHcCCCEEEEEeCCCCCCcchhhhhcCCCCCcccchhhhcccccccc
Confidence 44444444 367788763 233557889999999998852 1222100
Q ss_pred ---------CchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEch
Q 019244 236 ---------YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 284 (344)
Q Consensus 236 ---------~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~ 284 (344)
....+++.+..+++.. ++||++-| +.+.+|+.++..+|||++.+..
T Consensus 192 ~~~~~~~~~d~~~~w~~i~~lr~~~--~~PvivK~-v~~~e~A~~a~~~GaD~I~vsn 246 (352)
T 3sgz_A 192 TQSVPVLFPKASFCWNDLSLLQSIT--RLPIILKG-ILTKEDAELAMKHNVQGIVVSN 246 (352)
T ss_dssp -------CCCTTCCHHHHHHHHHHC--CSCEEEEE-ECSHHHHHHHHHTTCSEEEECC
T ss_pred cchhhhhccCCCCCHHHHHHHHHhc--CCCEEEEe-cCcHHHHHHHHHcCCCEEEEeC
Confidence 0123567788888776 78998854 6889999999999999999853
|
| >1vkf_A Glycerol uptake operon antiterminator-related Pro; struc genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: CIT; 1.65A {Thermotoga maritima} SCOP: c.1.29.1 | Back alignment and structure |
|---|
Probab=83.29 E-value=0.72 Score=39.69 Aligned_cols=36 Identities=25% Similarity=0.298 Sum_probs=30.8
Q ss_pred HHHHHHHHhcCCcEEEEe-ecCHHHHHHHHHcCCcEEEEcc
Q 019244 189 KDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSN 228 (344)
Q Consensus 189 ~~i~~i~~~~~~PvivK~-v~~~~~a~~~~~~G~d~I~v~~ 228 (344)
+.++++ +++|+++.| +.+.|++.. .++||++|..|+
T Consensus 142 ~~I~~v---~~~PiIaGGlI~t~edv~~-l~aGA~aIsTs~ 178 (188)
T 1vkf_A 142 KVARKI---PGRTVIAAGLVETEEEARE-ILKHVSAISTSS 178 (188)
T ss_dssp HHHTTS---TTSEEEEESCCCSHHHHHH-HTTTSSEEEECC
T ss_pred HHHHHh---cCCCEEEECCcCCHHHHHH-HHCCCeEEEeCC
Confidence 456666 689999988 479999999 999999999876
|
| >2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A* | Back alignment and structure |
|---|
Probab=83.19 E-value=0.87 Score=39.54 Aligned_cols=44 Identities=23% Similarity=0.292 Sum_probs=38.1
Q ss_pred CCcHHHHHHHHHhcC-CcEEEEeecCHHHHHHHHHcCCcEEEEcc
Q 019244 185 SLSWKDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSN 228 (344)
Q Consensus 185 ~~~~~~i~~i~~~~~-~PvivK~v~~~~~a~~~~~~G~d~I~v~~ 228 (344)
.+.|+.++++++..+ +|+++-+..+++++..+.++|+++|.++.
T Consensus 157 ~~~~~~l~~~~~~~~~~pvia~GGI~~~nv~~~~~~Ga~gv~vgs 201 (227)
T 2tps_A 157 VQGVSLIEAVRRQGISIPIVGIGGITIDNAAPVIQAGADGVSMIS 201 (227)
T ss_dssp CCTTHHHHHHHHTTCCCCEEEESSCCTTTSHHHHHTTCSEEEESH
T ss_pred ccCHHHHHHHHHhCCCCCEEEEcCCCHHHHHHHHHcCCCEEEEhH
Confidence 357899999998887 99998887779999999999999999953
|
| >1n8f_A DAHP synthetase; (beta/alpha)8 barrel, metal binding protein; HET: PEP; 1.75A {Escherichia coli} SCOP: c.1.10.4 PDB: 1gg1_A 1kfl_A* 1qr7_A* | Back alignment and structure |
|---|
Probab=83.07 E-value=6.6 Score=36.92 Aligned_cols=119 Identities=19% Similarity=0.231 Sum_probs=69.4
Q ss_pred HHHHHHHhcCCcEEEEee--cCHHHHHHHHHc---CCcEEEEc-------------------cCCCCCCCCchhhHHHHH
Q 019244 190 DVKWLQTITKLPILVKGV--LTAEDARIAVQA---GAAGIIVS-------------------NHGARQLDYVPATIMALE 245 (344)
Q Consensus 190 ~i~~i~~~~~~PvivK~v--~~~~~a~~~~~~---G~d~I~v~-------------------~~gG~~~~~g~~~~~~l~ 245 (344)
...++...++.||.+|.. .+++++..++.+ .=.++-+. -.|++..+.-...+..+.
T Consensus 171 ~hr~~asg~~~PVg~Kngt~g~i~~~l~Ai~aa~~~h~fl~~~~~G~~~~v~t~GN~~~~lilRG~~~~ny~~~di~~~~ 250 (350)
T 1n8f_A 171 VHRELASGLSCPVGFKNGTDGTIKVAIDAINAAGAPHCFLSVTKWGHSAIVNTSGNGDCHIILRGGKEPNYSAKHVAEVK 250 (350)
T ss_dssp HHHHHHHTCSSCEEEECCTTCCSHHHHHHHHHHTSCCEEEEECTTSBEEEEEECCCSCEEEEECCSSSCCCSHHHHHHHH
T ss_pred HHHHHHhcCCCeEEEecCCCCCHHHHHHHHHHHhCCceeeeeCCCCcEEEEECCCCCCEEEEECCCCCCCCCHHHHHHHH
Confidence 566666778999999987 456776555322 21122111 124443223233455555
Q ss_pred HHHHHccCCCc--EEEec-----CCC------CHHHHHHHHHcCC---CEEEEchHH-------------HHHhh----h
Q 019244 246 EVVKATQGRIP--VFLDG-----GVR------RGTDVFKALALGA---SGIFIGRPV-------------VYSLA----A 292 (344)
Q Consensus 246 ~i~~~~~~~~~--via~G-----GIr------~g~dv~kalalGA---d~V~ig~~~-------------l~~~~----~ 292 (344)
++.+.. .+| |+.|- +=. -..+++.+++.|+ +++|+-+-+ -||.+ |
T Consensus 251 ~~l~~~--~lp~~VivD~SH~ns~k~~~~Q~~vv~~laa~ia~G~~~i~GlmiEshl~dG~Q~l~~~~~l~yG~SITD~C 328 (350)
T 1n8f_A 251 EGLNKA--GLPAQVMIDFSHANSSKQFKKQMDVCADVCQQIAGGEKAIIGVMVESHLVEGNQSLESGEPLAYGKSITDAC 328 (350)
T ss_dssp HHHHHT--TCCCCEEEECSGGGTTTCGGGHHHHHHHHHHHHHTTCCSEEEEEEEBCSSSBBCCSSSCSCCCTTCBSSSCB
T ss_pred HHHHHc--CCCCeEEEECCCcccCccccccHHHHHHHHHHHHcCCCcccEEEEEeccCCCCcCCCCCccccCCCcCcccc
Confidence 433333 578 99853 222 2345888899999 999997643 33332 5
Q ss_pred cChHHHHHHHHHHHHHHH
Q 019244 293 EGEKGVRRVLEMLREEFE 310 (344)
Q Consensus 293 ~G~~~v~~~l~~l~~el~ 310 (344)
-|.+.-+.+|+.+.+.++
T Consensus 329 i~w~~t~~ll~~la~~~~ 346 (350)
T 1n8f_A 329 IGWEDTDALLRQLANAVK 346 (350)
T ss_dssp BCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 577777777777766654
|
| >2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein, pyridoxal phosphate, structural genomi NPPSFA; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=83.03 E-value=5.9 Score=36.95 Aligned_cols=83 Identities=24% Similarity=0.322 Sum_probs=55.2
Q ss_pred HHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEcc--------CCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCC
Q 019244 194 LQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSN--------HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 265 (344)
Q Consensus 194 i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~--------~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~ 265 (344)
+.+..+.-+|+ -+.+++.|+.+.++|+++|.+-+ .||... ..+.+.+.++++++ ++||++==-|..
T Consensus 12 ~~~~~kgGvI~-d~~~~e~A~~ae~aGA~aI~~l~~v~~d~~~~~G~ar---m~~p~~i~~I~~av--~iPV~~K~rig~ 85 (330)
T 2yzr_A 12 FAKMVKHGVVM-DVTNVEQAQIAEEAGAVAVMALERVPADIRAAGGVAR---MSDPALIEEIMDAV--SIPVMAKCRIGH 85 (330)
T ss_dssp HHHTTTTSEEE-EESSHHHHHHHHHHTCSEEEECSSCHHHHC--CCCCC---CCCHHHHHHHHHHC--SSCEEEEEETTC
T ss_pred HHHHccCCcee-eCCHHHHHHHHHHcCCCEEEecCCccccccCCcchhh---cCCHHHHHHHHHhc--CCCeEEEEeecc
Confidence 34445667777 67889999999999999995532 233111 34567788888887 799997554433
Q ss_pred HHHHHHHHHcCCCEEEE
Q 019244 266 GTDVFKALALGASGIFI 282 (344)
Q Consensus 266 g~dv~kalalGAd~V~i 282 (344)
-.++--.-++|||++-.
T Consensus 86 ~~e~qilea~GaD~Id~ 102 (330)
T 2yzr_A 86 TTEALVLEAIGVDMIDE 102 (330)
T ss_dssp HHHHHHHHHTTCSEEEE
T ss_pred hHHHHHHHHcCCCEEeh
Confidence 33322233499999864
|
| >3dip_A Enolase; structural genomics, isomerase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, NYSGXRC, lyase; HET: SIC; 2.50A {Unidentified} | Back alignment and structure |
|---|
Probab=83.00 E-value=5.5 Score=38.16 Aligned_cols=88 Identities=10% Similarity=0.098 Sum_probs=65.1
Q ss_pred cHHHHHHHHHhc--CCcEEEEee--cCHHHHH----HHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEE
Q 019244 187 SWKDVKWLQTIT--KLPILVKGV--LTAEDAR----IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 258 (344)
Q Consensus 187 ~~~~i~~i~~~~--~~PvivK~v--~~~~~a~----~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~vi 258 (344)
+.+.++.+|+.+ +.++.+-.- .+.++|. .+.+.|+++|---- ..+..++.+.++++.. .+||+
T Consensus 199 d~e~v~avR~a~g~d~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iEqP~-------~~~~~~~~~~~l~~~~--~iPIa 269 (410)
T 3dip_A 199 GLEPFRKIRAAVGQRIEIMCELHSLWGTHAAARICNALADYGVLWVEDPI-------AKMDNIPAVADLRRQT--RAPIC 269 (410)
T ss_dssp HHHHHHHHHHHHTTSSEEEEECTTCBCHHHHHHHHHHGGGGTCSEEECCB-------SCTTCHHHHHHHHHHH--CCCEE
T ss_pred HHHHHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHHhcCCCEEECCC-------CCcccHHHHHHHHhhC--CCCEE
Confidence 356789999988 478887643 5677654 45567888886310 1123567777787766 79999
Q ss_pred EecCCCCHHHHHHHHHcC-CCEEEEc
Q 019244 259 LDGGVRRGTDVFKALALG-ASGIFIG 283 (344)
Q Consensus 259 a~GGIr~g~dv~kalalG-Ad~V~ig 283 (344)
++..+.+..|+.+++..| +|.|++-
T Consensus 270 ~dE~~~~~~~~~~~l~~~~~d~v~~k 295 (410)
T 3dip_A 270 GGENLAGTRRFHEMLCADAIDFVMLD 295 (410)
T ss_dssp ECTTCCSHHHHHHHHHTTCCSEEEEC
T ss_pred ecCCcCCHHHHHHHHHcCCCCeEeec
Confidence 999999999999999997 7999884
|
| >4e4u_A Mandalate racemase/muconate lactonizing enzyme; mandelate racemase, aldolase, structural genomics, biology; 1.35A {Unidentified} | Back alignment and structure |
|---|
Probab=82.91 E-value=3 Score=40.09 Aligned_cols=88 Identities=17% Similarity=0.117 Sum_probs=65.4
Q ss_pred cHHHHHHHHHhc--CCcEEEEee--cCHHHH----HHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEE
Q 019244 187 SWKDVKWLQTIT--KLPILVKGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 258 (344)
Q Consensus 187 ~~~~i~~i~~~~--~~PvivK~v--~~~~~a----~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~vi 258 (344)
+.+.++.+|+.+ ++++.+..- .+.++| +.+.+.|+++|--- ..+..++.+.++++.. .+||+
T Consensus 187 d~~~v~avR~a~G~d~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iEeP--------~~~~d~~~~~~l~~~~--~iPIa 256 (412)
T 4e4u_A 187 CELFCRRVREAVGSKADLLFGTHGQMVPSSAIRLAKRLEKYDPLWFEEP--------VPPGQEEAIAQVAKHT--SIPIA 256 (412)
T ss_dssp HHHHHHHHHHHHTTSSEEEECCCSCBCHHHHHHHHHHHGGGCCSEEECC--------SCSSCHHHHHHHHHTC--SSCEE
T ss_pred HHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHhhhcCCcEEECC--------CChhhHHHHHHHHhhC--CCCEE
Confidence 345788999987 478888653 466664 45667888888521 1123567778887765 79999
Q ss_pred EecCCCCHHHHHHHHHcC-CCEEEEch
Q 019244 259 LDGGVRRGTDVFKALALG-ASGIFIGR 284 (344)
Q Consensus 259 a~GGIr~g~dv~kalalG-Ad~V~ig~ 284 (344)
++..+.+..|+.+++..| +|.|++--
T Consensus 257 ~dE~~~~~~~~~~~i~~~a~d~v~~d~ 283 (412)
T 4e4u_A 257 TGERLTTKYEFHKLLQAGGASILQLNV 283 (412)
T ss_dssp ECTTCCHHHHHHHHHHTTCCSEECCCT
T ss_pred ecCccCCHHHHHHHHHcCCCCEEEeCc
Confidence 999999999999999988 78888753
|
| >3qw3_A Orotidine-5-phosphate decarboxylase/orotate phosphoribosyltransferase, putative (OMPDCASE-OPRTASE,...; orotidine monophosphate decarboxylase; 1.70A {Leishmania infantum} | Back alignment and structure |
|---|
Probab=82.90 E-value=2.7 Score=37.79 Aligned_cols=78 Identities=22% Similarity=0.280 Sum_probs=47.9
Q ss_pred HcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCC-HHHHHHHHHcCCC----E--EEEchHHHHHh
Q 019244 218 QAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR-GTDVFKALALGAS----G--IFIGRPVVYSL 290 (344)
Q Consensus 218 ~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~-g~dv~kalalGAd----~--V~ig~~~l~~~ 290 (344)
++|.++++++.+ ..+.+..+++.+++ .+++ +=||+- +.+..+++..|+| . +.+|||++.+
T Consensus 168 ~~g~~GvV~~at----------~~~e~~~ir~~~~~-~~~l-~PGIg~qg~tp~~a~~~G~d~~~~~~livvGR~I~~A- 234 (255)
T 3qw3_A 168 VNGNVGLVVGAT----------DPVALARVRARAPT-LWFL-VPGIGAQGGSLKASLDAGLRADGSGMLINVSRGLARA- 234 (255)
T ss_dssp GGSCEEEEECSS----------CHHHHHHHHHHCSS-CCEE-ECCC-----CHHHHHHHHCCTTSCCEEEEESHHHHTS-
T ss_pred hhCCeEEEECCC----------CHHHHHHHHHHCCC-CeEE-ECCcCCCCCCHHHHHHcCCCcccCeeEEEeChhhcCC-
Confidence 379999998532 12345666666653 4454 455653 3456677888999 3 8999999874
Q ss_pred hhcChHHHHHHHHHHHHHHHHHH
Q 019244 291 AAEGEKGVRRVLEMLREEFELAM 313 (344)
Q Consensus 291 ~~~G~~~v~~~l~~l~~el~~~m 313 (344)
.. .....+.+++|+....
T Consensus 235 --~d---p~~aa~~i~~~i~~~~ 252 (255)
T 3qw3_A 235 --AD---PRAAAKELCEEINAIR 252 (255)
T ss_dssp --SC---HHHHHHHHHHHHHHHH
T ss_pred --CC---HHHHHHHHHHHHHHHH
Confidence 11 2345566677776543
|
| >3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472} | Back alignment and structure |
|---|
Probab=82.86 E-value=7.4 Score=36.64 Aligned_cols=81 Identities=14% Similarity=0.110 Sum_probs=60.0
Q ss_pred HHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHH
Q 019244 190 DVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDV 269 (344)
Q Consensus 190 ~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv 269 (344)
.+.+.++..++|++. .+.+.+.+..+.+.|++.+.|... -...+..|..+.+ -..|||.+-|..|-+++
T Consensus 82 ~L~~~~~~~Gi~~~s-t~fD~~svd~l~~~~v~~~KI~S~-------~~~N~pLL~~va~---~gKPviLstGmstl~Ei 150 (350)
T 3g8r_A 82 KLVAEMKANGFKAIC-TPFDEESVDLIEAHGIEIIKIASC-------SFTDWPLLERIAR---SDKPVVASTAGARREDI 150 (350)
T ss_dssp HHHHHHHHTTCEEEE-EECSHHHHHHHHHTTCCEEEECSS-------STTCHHHHHHHHT---SCSCEEEECTTCCHHHH
T ss_pred HHHHHHHHcCCcEEe-ccCCHHHHHHHHHcCCCEEEECcc-------cccCHHHHHHHHh---hCCcEEEECCCCCHHHH
Confidence 455556666888763 568899999999999999999532 1345567776653 36899999999999999
Q ss_pred HHHHH----cCCCEEE
Q 019244 270 FKALA----LGASGIF 281 (344)
Q Consensus 270 ~kala----lGAd~V~ 281 (344)
..|+. .|-+.+.
T Consensus 151 ~~Ave~i~~~g~~viL 166 (350)
T 3g8r_A 151 DKVVSFMLHRGKDLTI 166 (350)
T ss_dssp HHHHHHHHTTTCCEEE
T ss_pred HHHHHHHHHcCCCEEE
Confidence 88765 3666444
|
| >3r4e_A Mandelate racemase/muconate lactonizing enzyme; enolase fold, mannonate dehydratase, D-mannonate, lyase; HET: CS2; 1.65A {Novosphingobium aromaticivorans} PDB: 2qjj_A 2qjn_A* 2qjm_A* | Back alignment and structure |
|---|
Probab=82.80 E-value=2 Score=41.49 Aligned_cols=87 Identities=14% Similarity=-0.055 Sum_probs=64.4
Q ss_pred HHHHHHHHHhc--CCcEEEEee--cCHHHH----HHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEE
Q 019244 188 WKDVKWLQTIT--KLPILVKGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 259 (344)
Q Consensus 188 ~~~i~~i~~~~--~~PvivK~v--~~~~~a----~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via 259 (344)
.+.++.+|+.+ ++++.+..- .+.+++ +.+.+.|+++|--- ..+..++.+.++++.. .+||++
T Consensus 207 ~~~v~avR~a~G~d~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iEqP--------~~~~d~~~~~~l~~~~--~iPIa~ 276 (418)
T 3r4e_A 207 PKLFEELRKTYGFDHHLLHDGHHRYTPQEAANLGKMLEPYQLFWLEDC--------TPAENQEAFRLVRQHT--VTPLAV 276 (418)
T ss_dssp HHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHGGGCCSEEESC--------SCCSSGGGGHHHHHHC--CSCEEE
T ss_pred HHHHHHHHHHcCCCCeEEEeCCCCCCHHHHHHHHHHHHhhCCCEEECC--------CCccCHHHHHHHHhcC--CCCEEE
Confidence 45689999987 578888753 466664 55667888888521 1112345566777766 799999
Q ss_pred ecCCCCHHHHHHHHHcC-CCEEEEch
Q 019244 260 DGGVRRGTDVFKALALG-ASGIFIGR 284 (344)
Q Consensus 260 ~GGIr~g~dv~kalalG-Ad~V~ig~ 284 (344)
++.+.+..|+.+++..| +|.|++--
T Consensus 277 dE~~~~~~~~~~~l~~~a~d~v~~k~ 302 (418)
T 3r4e_A 277 GEIFNTIWDAKDLIQNQLIDYIRATV 302 (418)
T ss_dssp CTTCCSGGGTHHHHHTTCCSEECCCT
T ss_pred cCCcCCHHHHHHHHHcCCCCeEecCc
Confidence 99999999999999987 79888764
|
| >3rr1_A GALD, putative D-galactonate dehydratase; enolase, magnesium binding site, lyase; 1.95A {Ralstonia pickettii} PDB: 3rra_A | Back alignment and structure |
|---|
Probab=82.76 E-value=2.7 Score=40.34 Aligned_cols=88 Identities=11% Similarity=-0.007 Sum_probs=64.3
Q ss_pred cHHHHHHHHHhc--CCcEEEEee--cCHHHH----HHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEE
Q 019244 187 SWKDVKWLQTIT--KLPILVKGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 258 (344)
Q Consensus 187 ~~~~i~~i~~~~--~~PvivK~v--~~~~~a----~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~vi 258 (344)
+.+.++.+|+.+ ++++.+..- .+.++| +.+.+.|+++|--- ..+..++.+.++++.. ++||+
T Consensus 164 d~e~v~avR~avG~d~~L~vDaN~~~~~~~A~~~~~~L~~~~i~~iEeP--------~~~~d~~~~~~l~~~~--~iPIa 233 (405)
T 3rr1_A 164 AVARVAEIRSAFGNTVEFGLDFHGRVSAPMAKVLIKELEPYRPLFIEEP--------VLAEQAETYARLAAHT--HLPIA 233 (405)
T ss_dssp HHHHHHHHHHTTGGGSEEEEECCSCBCHHHHHHHHHHHGGGCCSCEECS--------SCCSSTHHHHHHHTTC--SSCEE
T ss_pred HHHHHHHHHHHhCCCceEEEECCCCCCHHHHHHHHHHHHhcCCCEEECC--------CCcccHHHHHHHHhcC--CCCEE
Confidence 345788999887 578888753 466664 45667788887521 1122456677776655 79999
Q ss_pred EecCCCCHHHHHHHHHcC-CCEEEEch
Q 019244 259 LDGGVRRGTDVFKALALG-ASGIFIGR 284 (344)
Q Consensus 259 a~GGIr~g~dv~kalalG-Ad~V~ig~ 284 (344)
+++.+.+..|+.+++..| +|.|++--
T Consensus 234 ~dE~i~~~~~~~~~l~~~a~d~v~~d~ 260 (405)
T 3rr1_A 234 AGERMFSRFDFKRVLEAGGVSILQPDL 260 (405)
T ss_dssp ECTTCCSHHHHHHHHHHCCCSEECCBT
T ss_pred ecCCcCCHHHHHHHHHHhCCCeEEECh
Confidence 999999999999999987 78888753
|
| >2qkf_A 3-deoxy-D-manno-octulosonic acid 8- phosphate SYN; manno-octulosonate, synthase, lipopolysaccharide, KDOP, KDO8 KDO8PS; 1.75A {Neisseria meningitidis serogroup B} PDB: 3stf_A 3qpy_A 3ste_A 3qpz_A 3qq0_A 3fyo_A* 3qq1_A 3fyp_A* 3stc_A 3stg_A 1phw_A 1g7v_A* 1gg0_A 1phq_A* 1d9e_A 1pl9_A* 1q3n_A* 1x6u_A* 1x8f_A 1g7u_A* | Back alignment and structure |
|---|
Probab=82.60 E-value=5.3 Score=36.41 Aligned_cols=118 Identities=14% Similarity=0.157 Sum_probs=0.0
Q ss_pred cHHHHHHHHHhcCCcEEEEeec--CHHH----HHHHHHcCCcEEEEccCCCCCCCCch--hhHHHHHHHHHHccCCCcEE
Q 019244 187 SWKDVKWLQTITKLPILVKGVL--TAED----ARIAVQAGAAGIIVSNHGARQLDYVP--ATIMALEEVVKATQGRIPVF 258 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v~--~~~~----a~~~~~~G~d~I~v~~~gG~~~~~g~--~~~~~l~~i~~~~~~~~~vi 258 (344)
+.+.++++ ..+++||++|..+ ++++ +..+...|-+-+.+.-.|++. .... ..+..++.+++... .+||+
T Consensus 118 n~~ll~~~-a~~~kPV~lk~G~~~t~~e~~~A~~~i~~~Gn~~i~L~~rg~~~-~~~~~~~dl~~i~~lk~~~~-~~pV~ 194 (280)
T 2qkf_A 118 QTDLVVAM-AKTGNVVNIKKPQFLSPSQMKNIVEKFHEAGNGKLILCERGSSF-GYDNLVVDMLGFGVMKQTCG-NLPVI 194 (280)
T ss_dssp BHHHHHHH-HHTCCEEEEECCTTSCGGGHHHHHHHHHHTTCCCEEEEECCEEC-STTCEECCTTHHHHHHHHTT-TCCEE
T ss_pred CHHHHHHH-HcCCCcEEEECCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCC-CCCccccCHHHHHHHHHhCC-CCCEE
Q ss_pred E-----------ecCCCCH------HHHHHHHHcCCCEEEEchHHH------HHhhhcChHHHHHHHHHHHH
Q 019244 259 L-----------DGGVRRG------TDVFKALALGASGIFIGRPVV------YSLAAEGEKGVRRVLEMLRE 307 (344)
Q Consensus 259 a-----------~GGIr~g------~dv~kalalGAd~V~ig~~~l------~~~~~~G~~~v~~~l~~l~~ 307 (344)
. +||-..+ .=...++++||++++|-+.+- -+-..-..+.+.++++.++.
T Consensus 195 ~D~sH~~q~~~~~~~~s~g~~~~~~~~a~aava~Ga~G~~IE~H~~~d~al~D~~~sl~p~~l~~lv~~i~~ 266 (280)
T 2qkf_A 195 FDVTHSLQTRDAGSAASGGRRAQALDLALAGMATRLAGLFLESHPDPKLAKCDGPSALPLHLLEDFLIRIKA 266 (280)
T ss_dssp EEHHHHCC----------CHHHHHHHHHHHHHTTCCSEEEEEC----------------CCHHHHHHHHHHH
T ss_pred EECCCCccccCccccccCCchhhHHHHHHHHHHcCCCEEEEeecCCcccCCCccccCCCHHHHHHHHHHHHH
|
| >1tzz_A Hypothetical protein L1841; structural genomics, mandelate racemase like fold, nysgxrc target T1523, PSI, protein structure initiative; 1.86A {Bradyrhizobium japonicum} SCOP: c.1.11.2 d.54.1.1 PDB: 2dw7_A* 2dw6_A* | Back alignment and structure |
|---|
Probab=82.53 E-value=3.2 Score=39.46 Aligned_cols=87 Identities=8% Similarity=-0.051 Sum_probs=63.3
Q ss_pred cHHHHHHHHHhc--CCcEEEEee--cCHHHH----HHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEE
Q 019244 187 SWKDVKWLQTIT--KLPILVKGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 258 (344)
Q Consensus 187 ~~~~i~~i~~~~--~~PvivK~v--~~~~~a----~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~vi 258 (344)
..+.++.+|+.+ ++++.+..- .+.+++ +.+.+.|+++|-= ...+..++.+.++++.+ ++||+
T Consensus 196 ~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iEq--------P~~~~d~~~~~~l~~~~--~iPIa 265 (392)
T 1tzz_A 196 DRMRIEAVLEEIGKDAQLAVDANGRFNLETGIAYAKMLRDYPLFWYEE--------VGDPLDYALQAALAEFY--PGPMA 265 (392)
T ss_dssp HHHHHHHHHHHHTTTCEEEEECTTCCCHHHHHHHHHHHTTSCCSEEEC--------CSCTTCHHHHHHHTTTC--CSCEE
T ss_pred HHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHcCCCeecC--------CCChhhHHHHHHHHhhC--CCCEE
Confidence 445688898877 478887643 466654 4455678887741 01123566777776554 79999
Q ss_pred EecCCCCHHHHHHHHHcC-----CCEEEEc
Q 019244 259 LDGGVRRGTDVFKALALG-----ASGIFIG 283 (344)
Q Consensus 259 a~GGIr~g~dv~kalalG-----Ad~V~ig 283 (344)
+++.+.+..|+.+++..| +|.|++-
T Consensus 266 ~dE~~~~~~~~~~~i~~~~~~~~~d~v~ik 295 (392)
T 1tzz_A 266 TGENLFSHQDARNLLRYGGMRPDRDWLQFD 295 (392)
T ss_dssp ECTTCCSHHHHHHHHHHSCCCTTTCEECCC
T ss_pred ECCCCCCHHHHHHHHHcCCCccCCcEEEEC
Confidence 999999999999999998 8999885
|
| >2qq6_A Mandelate racemase/muconate lactonizing enzyme- like protein; enolase, Mg ION, PSI-2, NYSGXRC, structural genomics; 2.90A {Rubrobacter xylanophilus dsm 9941} | Back alignment and structure |
|---|
Probab=82.48 E-value=4.1 Score=38.92 Aligned_cols=87 Identities=15% Similarity=0.113 Sum_probs=64.1
Q ss_pred cHHHHHHHHHhc--CCcEEEEee--cCHHHH----HHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEE
Q 019244 187 SWKDVKWLQTIT--KLPILVKGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 258 (344)
Q Consensus 187 ~~~~i~~i~~~~--~~PvivK~v--~~~~~a----~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~vi 258 (344)
..+.++.+|+.+ ++++.+..- .+.+++ +.+.+.|+++|--- ..+..++.+.++++.+ ++||+
T Consensus 196 ~~e~v~avRea~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iEeP--------~~~~d~~~~~~l~~~~--~iPIa 265 (410)
T 2qq6_A 196 MVARVAAVREAVGPEVEVAIDMHGRFDIPSSIRFARAMEPFGLLWLEEP--------TPPENLDALAEVRRST--STPIC 265 (410)
T ss_dssp HHHHHHHHHHHHCSSSEEEEECTTCCCHHHHHHHHHHHGGGCCSEEECC--------SCTTCHHHHHHHHTTC--SSCEE
T ss_pred HHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhhcCCCeEECC--------CChhhHHHHHHHHhhC--CCCEE
Confidence 346788899887 478887743 466664 44667788877521 1123567777777655 79999
Q ss_pred EecCCCCHHHHHHHHHcC-CCEEEEc
Q 019244 259 LDGGVRRGTDVFKALALG-ASGIFIG 283 (344)
Q Consensus 259 a~GGIr~g~dv~kalalG-Ad~V~ig 283 (344)
+++.+.+..++.+++..| +|.|++-
T Consensus 266 ~dE~~~~~~~~~~~i~~~~~d~v~ik 291 (410)
T 2qq6_A 266 AGENVYTRFDFRELFAKRAVDYVMPD 291 (410)
T ss_dssp ECTTCCSHHHHHHHHHTTCCSEECCB
T ss_pred eCCCcCCHHHHHHHHHcCCCCEEecC
Confidence 999999999999999987 7998884
|
| >1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A | Back alignment and structure |
|---|
Probab=82.39 E-value=2.2 Score=37.38 Aligned_cols=90 Identities=10% Similarity=-0.017 Sum_probs=58.8
Q ss_pred cHHHHHHHHHhcCCcEEEEee-cCH-HHHHHHHHcCCcEEEEccCCCCCCCCchhh-HHHHHHHHHHccCCCcEEEecCC
Q 019244 187 SWKDVKWLQTITKLPILVKGV-LTA-EDARIAVQAGAAGIIVSNHGARQLDYVPAT-IMALEEVVKATQGRIPVFLDGGV 263 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v-~~~-~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~-~~~l~~i~~~~~~~~~via~GGI 263 (344)
..+.++.+++.++.|+.+... .++ +.++.+.++|+|+|++ |++.. ... ...+..+++. .+.++.+=.-
T Consensus 52 ~~~~~~~lr~~~~~~~~v~lmv~d~~~~i~~~~~agad~v~v--H~~~~----~~~~~~~~~~i~~~---g~~igv~~~p 122 (228)
T 1h1y_A 52 GAPVIQSLRKHTKAYLDCHLMVTNPSDYVEPLAKAGASGFTF--HIEVS----RDNWQELIQSIKAK---GMRPGVSLRP 122 (228)
T ss_dssp CHHHHHHHHTTCCSEEEEEEESSCGGGGHHHHHHHTCSEEEE--EGGGC----TTTHHHHHHHHHHT---TCEEEEEECT
T ss_pred CHHHHHHHHhhcCCcEEEEEEecCHHHHHHHHHHcCCCEEEE--CCCCc----ccHHHHHHHHHHHc---CCCEEEEEeC
Confidence 457889999888777775554 232 3478888999999999 43321 122 3344444332 4556665555
Q ss_pred CCHHHHHHHHHc---CCCEEEEchH
Q 019244 264 RRGTDVFKALAL---GASGIFIGRP 285 (344)
Q Consensus 264 r~g~dv~kalal---GAd~V~ig~~ 285 (344)
.+..+.++.+.- ++|.|.+++-
T Consensus 123 ~t~~e~~~~~~~~~~~~d~vl~~sv 147 (228)
T 1h1y_A 123 GTPVEEVFPLVEAENPVELVLVMTV 147 (228)
T ss_dssp TSCGGGGHHHHHSSSCCSEEEEESS
T ss_pred CCCHHHHHHHHhcCCCCCEEEEEee
Confidence 677777777766 9999999653
|
| >1rvg_A Fructose-1,6-bisphosphate aldolase; class II aldolase, metal-depdendent aldolase, lyase; 2.00A {Thermus aquaticus} SCOP: c.1.10.2 PDB: 1rv8_A 2fjk_A* | Back alignment and structure |
|---|
Probab=82.25 E-value=31 Score=31.76 Aligned_cols=109 Identities=26% Similarity=0.320 Sum_probs=74.2
Q ss_pred cCHHHHHHHH-HcCCcEEEEcc---CCCCCCCCchh--hHHHHHHHHHHccCCCcEEEecCC------------------
Q 019244 208 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPA--TIMALEEVVKATQGRIPVFLDGGV------------------ 263 (344)
Q Consensus 208 ~~~~~a~~~~-~~G~d~I~v~~---~gG~~~~~g~~--~~~~l~~i~~~~~~~~~via~GGI------------------ 263 (344)
.+|++|+... +.|+|.+-++- ||-+..+ +.| .++.|.+|.+.+ ++|+..=||=
T Consensus 153 T~Peea~~Fv~~TgvD~LAvaiGt~HG~Yk~~-g~p~L~~~~L~~I~~~~--~vpLVlHGgSsv~~~~~~~~~~~gg~~~ 229 (305)
T 1rvg_A 153 TNPEEARIFMERTGADYLAVAIGTSHGAYKGK-GRPFIDHARLERIARLV--PAPLVLHGASAVPPELVERFRASGGEIG 229 (305)
T ss_dssp CCHHHHHHHHHHHCCSEEEECSSCCSSSBCSS-SSCCCCHHHHHHHHHHC--CSCEEECSCCCCCHHHHHHHHHTTCCCC
T ss_pred CCHHHHHHHHHHHCCCEEEEecCccccccCCC-CCCccCHHHHHHHHHhc--CCCEEEeCCCCCcHHHHHHHHhhccccc
Confidence 5688887766 58999999873 5544221 333 467899999888 5999997754
Q ss_pred ---C-CHHHHHHHHHcCCCEEEEchHHHHHhhh-------cC-----h-HHHHHHHHHHHHHHHHHHHHhCCC
Q 019244 264 ---R-RGTDVFKALALGASGIFIGRPVVYSLAA-------EG-----E-KGVRRVLEMLREEFELAMALSGCR 319 (344)
Q Consensus 264 ---r-~g~dv~kalalGAd~V~ig~~~l~~~~~-------~G-----~-~~v~~~l~~l~~el~~~m~~~G~~ 319 (344)
. .-+++.|++.+|..=|-+++-+-++... .. + .-+....+.+++.++..|..+|+.
T Consensus 230 ~~~G~p~e~i~~ai~~GV~KiNi~Tdl~~A~~~~vr~~~~~~~~~~dpr~~l~~~~~a~~~~v~~~~~~~gs~ 302 (305)
T 1rvg_A 230 EAAGIHPEDIKKAISLGIAKINTDTDLRLAFTALIREALNKNPKEFDPRKYLGPAREAVKEVVKSRMELFGSV 302 (305)
T ss_dssp SCBCCCHHHHHHHHHTTEEEEEECHHHHHHHHHHHHHHHHHCTTCCCTHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred cCCCCCHHHHHHHHHCCCeEEEEChHHHHHHHHHHHHHHHhCccccChHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 2 3567889999999999999977554321 11 1 112333456777777788888764
|
| >2i1o_A Nicotinate phosphoribosyltransferase; ZIN ION, zinc finger M structural genomics, PSI, protein structure initiative; 2.40A {Thermoplasma acidophilum} PDB: 1ytd_A* 1yte_A* 1ytk_A | Back alignment and structure |
|---|
Probab=82.12 E-value=7.4 Score=37.30 Aligned_cols=94 Identities=18% Similarity=0.075 Sum_probs=60.6
Q ss_pred HHHHHHHHHhcC--CcEEEEeecCH----HHHHHHHHc--CCcEEEEccCCCCCCCCchhhHHHHHHHHHHc---c-CCC
Q 019244 188 WKDVKWLQTITK--LPILVKGVLTA----EDARIAVQA--GAAGIIVSNHGARQLDYVPATIMALEEVVKAT---Q-GRI 255 (344)
Q Consensus 188 ~~~i~~i~~~~~--~PvivK~v~~~----~~a~~~~~~--G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~---~-~~~ 255 (344)
.+.++..++.++ .++++ ++-|. +++..+.+. |+|+|-+++...+ .| ...+...++++.+ + .++
T Consensus 197 ~~A~~~~~~~~p~~~~~~v-lvDT~d~~~~~al~~a~~l~~~d~IrlDs~~~~---~g-d~~~~v~~v~~~ld~~G~~~~ 271 (398)
T 2i1o_A 197 EEAWKLTLENTKNGQKSVL-LIDTYMDEKFAAIKIAEMFDKVDYIRLDTPSSR---RG-NFEALIREVRWELALRGRSDI 271 (398)
T ss_dssp HHHHHHHHHTCCTTSCCEE-ECCSSSCHHHHHHHHHTTCSCCCEEEECCCGGG---CS-CHHHHHHHHHHHHHHTTCTTS
T ss_pred HHHHHHHHHhCCCCCCEEE-EEcCchHHHHHHHHHHHhhcCCcEEEeCCCCCC---cc-cHHHHHHHHHHHHHhCCCCce
Confidence 456777777775 34433 45443 444444444 9999999875311 01 1233444444332 2 268
Q ss_pred cEEEecCCCCHHHHHHHHHcCCCEEEEchHHH
Q 019244 256 PVFLDGGVRRGTDVFKALALGASGIFIGRPVV 287 (344)
Q Consensus 256 ~via~GGIr~g~dv~kalalGAd~V~ig~~~l 287 (344)
.|++||||. ...+.+..+.|+|.+++|+.+.
T Consensus 272 ~I~aSggl~-~~~i~~l~~~GvD~~gvGt~l~ 302 (398)
T 2i1o_A 272 KIMVSGGLD-ENTVKKLREAGAEAFGVGTSIS 302 (398)
T ss_dssp EEEEESSCC-HHHHHHHHHTTCCEEEECHHHH
T ss_pred EEEEeCCCC-HHHHHHHHHcCCCEEEeCcccC
Confidence 999999995 7888888889999999999765
|
| >3tji_A Mandelate racemase/muconate lactonizing enzyme, N domain protein; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.80A {Enterobacter SP} | Back alignment and structure |
|---|
Probab=81.83 E-value=3.2 Score=40.11 Aligned_cols=87 Identities=17% Similarity=0.006 Sum_probs=64.6
Q ss_pred HHHHHHHHHhc--CCcEEEEee--cCHHHH----HHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEE
Q 019244 188 WKDVKWLQTIT--KLPILVKGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 259 (344)
Q Consensus 188 ~~~i~~i~~~~--~~PvivK~v--~~~~~a----~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via 259 (344)
.+.++.+|+.+ ++++.+..- .++++| +.+.+.|+++|--- ..+..++.+.++++.. .+||++
T Consensus 209 ~e~v~avR~avG~d~~L~vDaN~~~~~~~A~~~~~~Le~~~i~~iEqP--------~~~~d~~~~~~l~~~~--~iPIa~ 278 (422)
T 3tji_A 209 VEMFHALREKYGWKLHILHDVHERLFPQQAVQLAKQLEPFQPYFIEDI--------LPPQQSAWLEQVRQQS--CVPLAL 278 (422)
T ss_dssp HHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHGGGCCSEEECC--------SCGGGGGGHHHHHHHC--CCCEEE
T ss_pred HHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHHhhCCCeEECC--------CChhhHHHHHHHHhhC--CCCEEE
Confidence 45689999987 578888753 466665 45567788888521 1123455677777766 799999
Q ss_pred ecCCCCHHHHHHHHHcC-CCEEEEch
Q 019244 260 DGGVRRGTDVFKALALG-ASGIFIGR 284 (344)
Q Consensus 260 ~GGIr~g~dv~kalalG-Ad~V~ig~ 284 (344)
++.+.+..|+.+++..| +|.|++--
T Consensus 279 dE~~~~~~~~~~ll~~ga~d~v~~k~ 304 (422)
T 3tji_A 279 GELFNNPAEWHDLIVNRRIDFIRCHV 304 (422)
T ss_dssp CTTCCSGGGTHHHHHTTCCSEECCCG
T ss_pred eCCcCCHHHHHHHHhcCCCCEEecCc
Confidence 99999999999999987 78888754
|
| >3ddm_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9284B, enolase family, PSI-2; 2.60A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=81.79 E-value=4.7 Score=38.40 Aligned_cols=87 Identities=10% Similarity=0.031 Sum_probs=64.2
Q ss_pred cHHHHHHHHHhc--CCcEEEEee--cCHHHH----HHHHHcCCcEEEEccCCCCCCCCchhh-HHHHHHHHHHccCCCcE
Q 019244 187 SWKDVKWLQTIT--KLPILVKGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPAT-IMALEEVVKATQGRIPV 257 (344)
Q Consensus 187 ~~~~i~~i~~~~--~~PvivK~v--~~~~~a----~~~~~~G~d~I~v~~~gG~~~~~g~~~-~~~l~~i~~~~~~~~~v 257 (344)
+.+.++.+|+.+ ++++.+..- .+.+++ +.+.+.|+++|-=- ..+.. ++.+.++++.. .+||
T Consensus 185 d~~~v~avR~a~g~~~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iEeP--------~~~~d~~~~~~~l~~~~--~iPI 254 (392)
T 3ddm_A 185 DVRNALHVRELLGAATPLMADANQGWDLPRARQMAQRLGPAQLDWLEEP--------LRADRPAAEWAELAQAA--PMPL 254 (392)
T ss_dssp HHHHHHHHHHHHCSSSCEEEECTTCCCHHHHHHHHHHHGGGCCSEEECC--------SCTTSCHHHHHHHHHHC--SSCE
T ss_pred HHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHHHhCCCEEECC--------CCccchHHHHHHHHHhc--CCCE
Confidence 345688999987 578888753 466664 45667788888521 11223 67778887766 7999
Q ss_pred EEecCCCCHHHHHHHHHcC-CCEEEEc
Q 019244 258 FLDGGVRRGTDVFKALALG-ASGIFIG 283 (344)
Q Consensus 258 ia~GGIr~g~dv~kalalG-Ad~V~ig 283 (344)
.+++.+.+..|+.+++..| +|.|++-
T Consensus 255 a~dE~~~~~~~~~~~i~~~a~d~v~~k 281 (392)
T 3ddm_A 255 AGGENIAGVAAFETALAARSLRVMQPD 281 (392)
T ss_dssp EECTTCCSHHHHHHHHHHTCEEEECCC
T ss_pred EeCCCCCCHHHHHHHHHcCCCCEEEeC
Confidence 9999999999999999987 6888774
|
| >2e1d_A Transaldolase; pentose phosphate pathway, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Mus musculus} SCOP: c.1.10.1 PDB: 2cwn_A 1f05_A | Back alignment and structure |
|---|
Probab=81.78 E-value=6.6 Score=36.71 Aligned_cols=100 Identities=15% Similarity=0.145 Sum_probs=67.7
Q ss_pred cHHH---HHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCC-----c--------hhhHHHHHHHHHH
Q 019244 187 SWKD---VKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDY-----V--------PATIMALEEVVKA 250 (344)
Q Consensus 187 ~~~~---i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~-----g--------~~~~~~l~~i~~~ 250 (344)
+|+- ++.+.+..++++-+=.+.|.+.+..+.++|+..|-.. -||-.|| | -|.+..+.++.+.
T Consensus 143 T~eGi~A~~~L~~e~GI~vNvTliFS~~Qa~aaa~AGa~~iSpF--VgRidd~~~~~~g~~~~~~~~d~gv~~v~~iy~~ 220 (331)
T 2e1d_A 143 TWEGIQAGKELEEQHGIHCNMTLLFSFAQAVACAEAGVTLISPF--VGRILDWHVANTDKKSYEPQGDPGVKSVTKIYNY 220 (331)
T ss_dssp SHHHHHHHHHHHHHHCCCEEEEEECSHHHHHHHHHHTCSEEEEB--SHHHHHHHHHHSSCCCCCGGGCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCceeEeeeCCHHHHHHHHHcCCcEEEec--ccHHHHHHHhhcCcccccccCCHHHHHHHHHHHH
Confidence 5664 4555443388888888999999999999999988663 3332221 1 2234444444443
Q ss_pred c---cCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhh
Q 019244 251 T---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 291 (344)
Q Consensus 251 ~---~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~ 291 (344)
. ..+..|+ .-.+|+..+|.. ..|+|.+-|.-.++..+.
T Consensus 221 y~~~~~~T~v~-~AS~r~~~~V~~--LaG~d~vTipp~~l~~l~ 261 (331)
T 2e1d_A 221 YKKFGYKTIVM-GASFRNTGEIKA--LAGCDFLTISPKLLGELL 261 (331)
T ss_dssp HHHTTCCCEEE-EBCCSSHHHHHT--TTTSSEEEECHHHHHHHH
T ss_pred HHHcCCCeEEe-ccCcCCHHHHHH--hhCCCEEECCHHHHHHHH
Confidence 3 2234444 466999999997 579999998888887765
|
| >3sbf_A Mandelate racemase / muconate lactonizing enzyme; enolase fold, acid sugar dehydratase, D-araninonate, isomera; HET: EPE D8T; 1.50A {Vibrionales bacterium swat-3} PDB: 3r25_A 3dfh_A 4gis_A 4gir_A 4ggh_A 3gy1_A | Back alignment and structure |
|---|
Probab=81.51 E-value=2.8 Score=40.10 Aligned_cols=89 Identities=15% Similarity=-0.029 Sum_probs=64.3
Q ss_pred cHHHHHHHHHhc--CCcEEEEee--cCHHHH----HHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEE
Q 019244 187 SWKDVKWLQTIT--KLPILVKGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 258 (344)
Q Consensus 187 ~~~~i~~i~~~~--~~PvivK~v--~~~~~a----~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~vi 258 (344)
..+.++.+|+.+ ++++.+..- .+.++| +.+.+.|+++|--- ..+..++.+.++++.. .+||+
T Consensus 187 d~~~v~avR~a~G~d~~l~vDan~~~~~~~A~~~~~~L~~~~i~~iEqP--------~~~~~~~~~~~l~~~~--~iPIa 256 (401)
T 3sbf_A 187 TLTMFKSLREKYGNQFHILHDVHERLFPNQAIQFAKEVEQYKPYFIEDI--------LPPNQTEWLDNIRSQS--SVSLG 256 (401)
T ss_dssp HHHHHHHHHHHHTTSSEEEEECTTCSCHHHHHHHHHHHGGGCCSCEECS--------SCTTCGGGHHHHHTTC--CCCEE
T ss_pred HHHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCCEEECC--------CChhHHHHHHHHHhhC--CCCEE
Confidence 345789999987 588888754 466665 45567788887521 1112345566666654 79999
Q ss_pred EecCCCCHHHHHHHHHcC-CCEEEEchH
Q 019244 259 LDGGVRRGTDVFKALALG-ASGIFIGRP 285 (344)
Q Consensus 259 a~GGIr~g~dv~kalalG-Ad~V~ig~~ 285 (344)
+++.+.+..|+.+++..| +|.|++--.
T Consensus 257 ~dE~~~~~~~~~~~i~~~~~d~v~~k~~ 284 (401)
T 3sbf_A 257 LGELFNNPEEWKSLIANRRIDFIRCHVS 284 (401)
T ss_dssp ECTTCCSHHHHHHHHHTTCCSEECCCGG
T ss_pred eCCccCCHHHHHHHHhcCCCCEEecCcc
Confidence 999999999999999987 788887643
|
| >2pcq_A Putative dihydrodipicolinate synthase; lyase, lysine biosynthesis, dihydrodipicoliante, S genomics, NPPSFA; 2.10A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=81.35 E-value=4 Score=37.11 Aligned_cols=88 Identities=19% Similarity=0.141 Sum_probs=52.6
Q ss_pred HHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHcCCCEEEEchHHHHH
Q 019244 214 RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVVYS 289 (344)
Q Consensus 214 ~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~k----alalGAd~V~ig~~~l~~ 289 (344)
+.+++. +++|.+.|+-|-.. .. +.+--.++.+.+..++|||+--|=.+-.++++ |-.+|||++++-.|+++.
T Consensus 26 ~~li~~-v~gl~v~GttGE~~--~L-s~~Er~~v~~~~~~rvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~ 101 (283)
T 2pcq_A 26 QALEPL-VDGLLVYGSNGEGV--HL-TPEERARGLRALRPRKPFLVGLMEETLPQAEGALLEAKAAGAMALLATPPRYYH 101 (283)
T ss_dssp HHHGGG-SSCCEETCTTTTGG--GS-CHHHHHHHHHTCCCSSCCEEEECCSSHHHHHHHHHHHHHHTCSEEEECCCCTTG
T ss_pred HHHHhh-CCEEEECCcCcCch--hc-CHHHHHHHHHHHHhCCcEEEeCCCCCHHHHHHHHHHHHhcCCCEEEecCCcCCC
Confidence 446678 99999876544211 11 12222233333323899987555444555543 344799999999999875
Q ss_pred hhhcChHHHHHHHHHHHH
Q 019244 290 LAAEGEKGVRRVLEMLRE 307 (344)
Q Consensus 290 ~~~~G~~~v~~~l~~l~~ 307 (344)
.. .++++.++++.+.+
T Consensus 102 ~~--~~~~l~~~f~~va~ 117 (283)
T 2pcq_A 102 GS--LGAGLLRYYEALAE 117 (283)
T ss_dssp GG--TTTHHHHHHHHHHH
T ss_pred CC--CHHHHHHHHHHHhc
Confidence 31 35677777766654
|
| >1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A | Back alignment and structure |
|---|
Probab=81.24 E-value=1.9 Score=38.05 Aligned_cols=41 Identities=17% Similarity=0.262 Sum_probs=34.9
Q ss_pred cHHHHHHHHHhcCCcEEEEeec-CHHHHHHHHHcCCcEEEEc
Q 019244 187 SWKDVKWLQTITKLPILVKGVL-TAEDARIAVQAGAAGIIVS 227 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v~-~~~~a~~~~~~G~d~I~v~ 227 (344)
.++.++++++.+++|+++-+.. +.+++..+.++|+|+++|+
T Consensus 179 ~~~~i~~l~~~~~~pi~~~GGI~~~e~i~~~~~~Gad~vivG 220 (248)
T 1geq_A 179 AYDLLRRAKRICRNKVAVGFGVSKREHVVSLLKEGANGVVVG 220 (248)
T ss_dssp HHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHhhcCCCEEEEeecCCHHHHHHHHHcCCCEEEEc
Confidence 3567899999889999987754 5599999999999999985
|
| >2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A* | Back alignment and structure |
|---|
Probab=81.10 E-value=6.9 Score=37.00 Aligned_cols=90 Identities=23% Similarity=0.309 Sum_probs=60.2
Q ss_pred HHHHHhc-CCcEEEEee------cCHHHHHHHHHcCCcEEEEccC----CCCC--------CC-----------------
Q 019244 192 KWLQTIT-KLPILVKGV------LTAEDARIAVQAGAAGIIVSNH----GARQ--------LD----------------- 235 (344)
Q Consensus 192 ~~i~~~~-~~PvivK~v------~~~~~a~~~~~~G~d~I~v~~~----gG~~--------~~----------------- 235 (344)
+++++.. +.|+++..- .+.+.++++.++|+++|++.-. |.|. +.
T Consensus 124 e~v~~~~~~~~~~~QLy~~~d~~~~~~~~~ra~~aG~~ai~it~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~g~ 203 (368)
T 2nli_A 124 EEISEGLNGGPRWFQIYMAKDDQQNRDILDEAKSDGATAIILTADSTVSGNRDRDVKNKFVYPFGMPIVQRYLRGTAEGM 203 (368)
T ss_dssp HHHHHHHTTCCEEEEECCBSSHHHHHHHHHHHHHTTCSCEEEESBCC---CBC--------CCSCCHHHHHHHTTSGGGC
T ss_pred HHHHHhCCCCCEEEEEeccCCHHHHHHHHHHHHHCCCCEEEEcCCCCcccchhHHHhhcccCcchhhhhhcccccCCCCc
Confidence 3444433 578888763 2345678899999999987531 1110 00
Q ss_pred ---------CchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEch
Q 019244 236 ---------YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 284 (344)
Q Consensus 236 ---------~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~ 284 (344)
....+++.+..+++.. ++||++= |+.+.+|+.++..+|||++.+..
T Consensus 204 ~l~~~~~~~d~~~~~~~i~~lr~~~--~~PvivK-~v~~~e~a~~a~~~Gad~I~vs~ 258 (368)
T 2nli_A 204 SLNNIYGASKQKISPRDIEEIAGHS--GLPVFVK-GIQHPEDADMAIKRGASGIWVSN 258 (368)
T ss_dssp -----CTTBCSBCCHHHHHHHHHHS--SSCEEEE-EECSHHHHHHHHHTTCSEEEECC
T ss_pred hHHhhhhccCchhhHHHHHHHHHHc--CCCEEEE-cCCCHHHHHHHHHcCCCEEEEcC
Confidence 0112456677777766 6899886 47899999999999999999953
|
| >3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=81.09 E-value=3.1 Score=37.22 Aligned_cols=41 Identities=7% Similarity=0.119 Sum_probs=33.8
Q ss_pred cHHHHHHHHHhc-----CCcEEEEeecCHHHHHHHHHcCCcEEEEc
Q 019244 187 SWKDVKWLQTIT-----KLPILVKGVLTAEDARIAVQAGAAGIIVS 227 (344)
Q Consensus 187 ~~~~i~~i~~~~-----~~PvivK~v~~~~~a~~~~~~G~d~I~v~ 227 (344)
.++.|+++|+.. ++++.|=+..+++.+..+.++|||.++++
T Consensus 178 ~l~KI~~lr~~~~~~~~~~~I~VDGGI~~~ti~~~~~aGAD~~V~G 223 (246)
T 3inp_A 178 MLDKAKEISKWISSTDRDILLEIDGGVNPYNIAEIAVCGVNAFVAG 223 (246)
T ss_dssp HHHHHHHHHHHHHHHTSCCEEEEESSCCTTTHHHHHTTTCCEEEES
T ss_pred HHHHHHHHHHHHHhcCCCeeEEEECCcCHHHHHHHHHcCCCEEEEe
Confidence 567777777653 47888888888999999999999999884
|
| >4gbu_A NADPH dehydrogenase 1; alpha/beta barrel, enenone reductase, alkene reductase, NADP oxidoreductase, carvone, enenatioselectivity; HET: 0WV 1PE FMN; 1.18A {Saccharomyces pastorianus} PDB: 4ge8_A* 1oya_A* 1oyb_A* 1oyc_A* 3tx9_A* 3rnd_A* 1k02_A* 1k03_A* 1bwk_A* 1bwl_A* | Back alignment and structure |
|---|
Probab=80.91 E-value=39 Score=32.07 Aligned_cols=63 Identities=21% Similarity=0.254 Sum_probs=42.0
Q ss_pred CCCcHHHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCC-------------CCCCchh-------hHHH
Q 019244 184 RSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR-------------QLDYVPA-------TIMA 243 (344)
Q Consensus 184 ~~~~~~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~-------------~~~~g~~-------~~~~ 243 (344)
...+.++|+++.+.+ .+-|++|.++|.|+|-+.+.-|+ ...+|.+ .++.
T Consensus 160 r~mt~~eI~~ii~~F-----------~~AA~rA~~AGFDgVEIH~AhGYLl~QFLSp~tN~RtDeYGGS~ENR~Rf~lEV 228 (400)
T 4gbu_A 160 HSLTKDEIKQYIKEY-----------VQAAKNSIAAGADGVEIHSANGYLLNQFLDPHSNTRTDEYGGSIENRARFTLEV 228 (400)
T ss_dssp EECCHHHHHHHHHHH-----------HHHHHHHHHTTCSEEEEECCTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHH
T ss_pred ccCCHHHHHHHHHHH-----------HHHHHHHHhcCcCeeeecccccchHHheecCcCCCCccccCCcHHHHHHHHHHH
Confidence 345788888888865 46789999999999999653332 1223322 4566
Q ss_pred HHHHHHHccCCCcEE
Q 019244 244 LEEVVKATQGRIPVF 258 (344)
Q Consensus 244 l~~i~~~~~~~~~vi 258 (344)
+..|++.++.+ +|.
T Consensus 229 i~aVr~~vg~d-~vg 242 (400)
T 4gbu_A 229 VDALVEAIGHE-KVG 242 (400)
T ss_dssp HHHHHHHHCGG-GEE
T ss_pred HHHHHHHcCCC-cEE
Confidence 77777777544 553
|
| >1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A* | Back alignment and structure |
|---|
Probab=80.69 E-value=1.9 Score=39.14 Aligned_cols=40 Identities=28% Similarity=0.217 Sum_probs=34.1
Q ss_pred cHHHHHHHHHhcCCcEEEEee-cCHHHHHHHHHcCCcEEEEcc
Q 019244 187 SWKDVKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSN 228 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v-~~~~~a~~~~~~G~d~I~v~~ 228 (344)
..+.++++++.+++||++.+- .++++++.+ .|+|+++|.+
T Consensus 190 ~~~~v~~vr~~~~~Pv~vGfGI~t~e~a~~~--~~ADgVIVGS 230 (271)
T 1ujp_A 190 VKDLVRRIKARTALPVAVGFGVSGKATAAQA--AVADGVVVGS 230 (271)
T ss_dssp CHHHHHHHHTTCCSCEEEESCCCSHHHHHHH--TTSSEEEECH
T ss_pred HHHHHHHHHhhcCCCEEEEcCCCCHHHHHHh--cCCCEEEECh
Confidence 356799999988999999876 569999997 9999999953
|
| >1chr_A Chloromuconate cycloisomerase; 3.00A {Ralstonia eutropha} PDB: 2chr_A | Back alignment and structure |
|---|
Probab=80.55 E-value=5.1 Score=37.73 Aligned_cols=88 Identities=10% Similarity=-0.020 Sum_probs=64.2
Q ss_pred cHHHHHHHHHhcC--CcEEEEee--cCHHH----HHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEE
Q 019244 187 SWKDVKWLQTITK--LPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 258 (344)
Q Consensus 187 ~~~~i~~i~~~~~--~PvivK~v--~~~~~----a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~vi 258 (344)
+.+.++.+|+.++ +++.+..- .+.++ ++.+.+.|+++|-= ...+..++.+.++++.. .+||.
T Consensus 174 d~~~v~avR~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iEq--------P~~~~~~~~~~~l~~~~--~iPia 243 (370)
T 1chr_A 174 DLIHMEALSNSLGSKAYLRVDVNQAWDEQVASVYIPELEALGVELIEQ--------PVGRENTQALRRLSDNN--RVAIM 243 (370)
T ss_dssp HHHHHHHHHHHSSTTCCEEEECTTCCCTTHHHHHTHHHHTTTEEEEEC--------CSCTTCHHHHHHHHHHS--CSEEE
T ss_pred HHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCCEEEC--------CCCcccHHHHHHHHhhC--CCCEE
Confidence 4456888999883 78888753 34444 45566778877741 11123466777887766 79999
Q ss_pred EecCCCCHHHHHHHHHcC-CCEEEEch
Q 019244 259 LDGGVRRGTDVFKALALG-ASGIFIGR 284 (344)
Q Consensus 259 a~GGIr~g~dv~kalalG-Ad~V~ig~ 284 (344)
++.-+.+..|+.+++..| +|.|++--
T Consensus 244 ~dE~~~~~~~~~~~~~~~~~d~v~~k~ 270 (370)
T 1chr_A 244 ADESLSTLASAFDLARDRSVDVFSLKL 270 (370)
T ss_dssp ESSSCCSHHHHHHHHTTTSCSEEEECT
T ss_pred eCCCcCCHHHHHHHHHcCCCCEEEECc
Confidence 999999999999999986 89998854
|
| >3qld_A Mandelate racemase/muconate lactonizing protein; structural genomics, PSI-2, isomerase; HET: MSE; 1.85A {Alicyclobacillus acidocaldarius LAA1} | Back alignment and structure |
|---|
Probab=80.49 E-value=21 Score=33.76 Aligned_cols=154 Identities=18% Similarity=0.254 Sum_probs=83.2
Q ss_pred CHHHHHHHHHHHHHcCCcEEEeccCCccccccHHHHHhhcCCCCccccccccc---ccccccccccchhhHHH---Hhhc
Q 019244 108 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQG---LDLGKMDEANDSGLAAY---VAGQ 181 (344)
Q Consensus 108 d~~~~~~~i~~a~~ag~~~l~~tvd~~~~g~r~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~~~~~---~~~~ 181 (344)
+++...+.+++..+.||+++-+.++...--.+-+.+|..+ |. ... .++. ..... +.. ...+.++ ...+
T Consensus 149 ~~e~~~~~~~~~~~~G~~~~K~Kv~~~~d~~~v~avR~~~--~~-~~l-~vDaN~~~~~~~-A~~-~~~l~~~~i~~iEe 222 (388)
T 3qld_A 149 SLDVLIQSVDAAVEQGFRRVKLKIAPGRDRAAIKAVRLRY--PD-LAI-AADANGSYRPED-APV-LRQLDAYDLQFIEQ 222 (388)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEECBTTBSHHHHHHHHHHC--TT-SEE-EEECTTCCCGGG-HHH-HHHGGGGCCSCEEC
T ss_pred CHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHC--CC-CeE-EEECCCCCChHH-HHH-HHHHhhCCCcEEEC
Confidence 3676666677777789999887765221112334445443 21 111 0110 00000 000 0001110 0012
Q ss_pred CCCCCcHHHHHHHHHhcCCcEEEEee-cCHHHHHHHHHcC-CcEEEEcc--CCCCCCCCchhhHHHHHHHHHHccCCCcE
Q 019244 182 IDRSLSWKDVKWLQTITKLPILVKGV-LTAEDARIAVQAG-AAGIIVSN--HGARQLDYVPATIMALEEVVKATQGRIPV 257 (344)
Q Consensus 182 ~~~~~~~~~i~~i~~~~~~PvivK~v-~~~~~a~~~~~~G-~d~I~v~~--~gG~~~~~g~~~~~~l~~i~~~~~~~~~v 257 (344)
+-+..+++..+++++.+++||..-+. .+..+.+.+++.| +|.|.+.- .|| ......+..+++.. .+++
T Consensus 223 P~~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~~~~~a~d~v~~k~~~~GG------it~~~~ia~~A~~~--gi~~ 294 (388)
T 3qld_A 223 PLPEDDWFDLAKLQASLRTPVCLDESVRSVRELKLTARLGAARVLNVKPGRLGG------FGATLRALDVAGEA--GMAA 294 (388)
T ss_dssp CSCTTCHHHHHHHHHHCSSCEEESTTCCSHHHHHHHHHHTCCSEEEECHHHHTS------HHHHHHHHHHHHHT--TCEE
T ss_pred CCCcccHHHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEEECchhhCC------HHHHHHHHHHHHHC--CCeE
Confidence 22333678899999999999998775 5788999888876 68777642 233 33333344444444 6888
Q ss_pred EEecCCCCHHHHHHHHHc
Q 019244 258 FLDGGVRRGTDVFKALAL 275 (344)
Q Consensus 258 ia~GGIr~g~dv~kalal 275 (344)
...+-+.++--.+-++.+
T Consensus 295 ~~~~~~es~i~~aa~~~l 312 (388)
T 3qld_A 295 WVGGMYETGVGRVHGLIA 312 (388)
T ss_dssp EECCCCCCHHHHHHHHHH
T ss_pred EecCccchHHHHHHHHHH
Confidence 776666666555544444
|
| >1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A* | Back alignment and structure |
|---|
Probab=80.39 E-value=15 Score=34.18 Aligned_cols=84 Identities=18% Similarity=0.167 Sum_probs=54.2
Q ss_pred cCCcEEEEee--cCHHHH-HHHHHcCCcEEEEccCCCCC-C-CCchh----hHHHHHHHHHHccCCCcEEEe--cCCCCH
Q 019244 198 TKLPILVKGV--LTAEDA-RIAVQAGAAGIIVSNHGARQ-L-DYVPA----TIMALEEVVKATQGRIPVFLD--GGVRRG 266 (344)
Q Consensus 198 ~~~PvivK~v--~~~~~a-~~~~~~G~d~I~v~~~gG~~-~-~~g~~----~~~~l~~i~~~~~~~~~via~--GGIr~g 266 (344)
.+.|+++..- .+++.. +.+..+|+|+|.+......+ . ..+.+ .++.+.++++.. ++||++- |...+.
T Consensus 115 ~~~pv~~~i~~~~~~~~~~~~~~~~gad~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~vr~~~--~~Pv~vK~~~~~~~~ 192 (349)
T 1p0k_A 115 PNGLIFANLGSEATAAQAKEAVEMIGANALQIHLNVIQEIVMPEGDRSFSGALKRIEQICSRV--SVPVIVKEVGFGMSK 192 (349)
T ss_dssp SSSCEEEEEETTCCHHHHHHHHHHTTCSEEEEEECTTTTC--------CTTHHHHHHHHHHHC--SSCEEEEEESSCCCH
T ss_pred CCceeEEeecCCCCHHHHHHHHHhcCCCeEEecccchhhhcCCCCCcchHHHHHHHHHHHHHc--CCCEEEEecCCCCCH
Confidence 3688887654 455554 44557899998775321110 0 01111 346677777766 6899885 444678
Q ss_pred HHHHHHHHcCCCEEEEc
Q 019244 267 TDVFKALALGASGIFIG 283 (344)
Q Consensus 267 ~dv~kalalGAd~V~ig 283 (344)
+++.++..+|||+|.+.
T Consensus 193 ~~a~~a~~~Gad~I~v~ 209 (349)
T 1p0k_A 193 ASAGKLYEAGAAAVDIG 209 (349)
T ss_dssp HHHHHHHHHTCSEEEEE
T ss_pred HHHHHHHHcCCCEEEEc
Confidence 99999999999999985
|
| >2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=80.02 E-value=34 Score=30.89 Aligned_cols=83 Identities=13% Similarity=0.210 Sum_probs=53.8
Q ss_pred HHHHHHHhcCCcEEEEee-------cCHHHHHHHHH-c-CCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEe
Q 019244 190 DVKWLQTITKLPILVKGV-------LTAEDARIAVQ-A-GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD 260 (344)
Q Consensus 190 ~i~~i~~~~~~PvivK~v-------~~~~~a~~~~~-~-G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~ 260 (344)
..+.|.+.+++||++=.+ ++++...++.+ . .+-+|+-+. | .+..+.++++..++++.|+ +
T Consensus 117 ~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La~~~pnIvgiK~s~--g--------d~~~~~~~~~~~~~~f~v~-~ 185 (292)
T 2vc6_A 117 HFKAIDAASTIPIIVYNIPGRSAIEIHVETLARIFEDCPNVKGVXDAT--G--------NLLRPSLERMACGEDFNLL-T 185 (292)
T ss_dssp HHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHHHCTTEEEEEECS--C--------CTHHHHHHHHHSCTTSEEE-E
T ss_pred HHHHHHHhCCCCEEEEeCccccCcCCCHHHHHHHHhhCCCEEEEecCC--C--------CHHHHHHHHHHcCCCEEEE-E
Confidence 456777778999998653 67888887776 3 355555432 1 2233445555555566664 5
Q ss_pred cCCCCHHHHHHHHHcCCCEEEEchHH
Q 019244 261 GGVRRGTDVFKALALGASGIFIGRPV 286 (344)
Q Consensus 261 GGIr~g~dv~kalalGAd~V~ig~~~ 286 (344)
| +...++.++++||+.+.-+..-
T Consensus 186 G---~d~~~~~~l~~G~~G~is~~~n 208 (292)
T 2vc6_A 186 G---EDGTALGYMAHGGHGCISVTAN 208 (292)
T ss_dssp S---CGGGHHHHHHTTCCEEEESGGG
T ss_pred C---chHHHHHHHHcCCCEEEecHHH
Confidence 5 2445778899999998887653
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 344 | ||||
| d1goxa_ | 359 | c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia | 1e-113 | |
| d1p4ca_ | 353 | c.1.4.1 (A:) Membrane-associated (S)-mandelate deh | 6e-98 | |
| d1tb3a1 | 349 | c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus | 2e-95 | |
| d1kbia1 | 414 | c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal | 2e-94 | |
| d1p0ka_ | 329 | c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomera | 1e-53 | |
| d1vcfa1 | 310 | c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-i | 2e-51 | |
| d1y0ea_ | 222 | c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosph | 1e-15 | |
| d1yxya1 | 230 | c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-p | 2e-15 | |
| d1ea0a2 | 771 | c.1.4.1 (A:423-1193) Alpha subunit of glutamate sy | 9e-09 | |
| d1ofda2 | 809 | c.1.4.1 (A:431-1239) Alpha subunit of glutamate sy | 2e-08 | |
| d1gtea2 | 312 | c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenas | 1e-04 | |
| d1tv5a1 | 409 | c.1.4.1 (A:158-566) Dihydroorotate dehydrogenase { | 3e-04 | |
| d1juba_ | 311 | c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactoco | 4e-04 | |
| d1d3ga_ | 367 | c.1.4.1 (A:) Dihydroorotate dehydrogenase {Human ( | 0.002 | |
| d1zfja1 | 365 | c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate d | 0.003 |
| >d1goxa_ c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 359 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Glycolate oxidase species: Spinach (Spinacia oleracea) [TaxId: 3562]
Score = 331 bits (849), Expect = e-113
Identities = 295/358 (82%), Positives = 317/358 (88%), Gaps = 26/358 (7%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITNV EYEAIAK+KLPKMV+DYYASGAEDQWTL ENRNAFSRILFRPRILIDV+ IDM
Sbjct: 2 EITNVNEYEAIAKQKLPKMVYDYYASGAEDQWTLAENRNAFSRILFRPRILIDVTNIDMT 61
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGT-------------------- 102
TT+LGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGT
Sbjct: 62 TTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 121
Query: 103 ------IMVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 156
+ VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRF LPPFLTLK
Sbjct: 122 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLK 181
Query: 157 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIA 216
NF+G+DLGKMD+ANDSGL++YVAGQIDRSLSWKDV WLQTIT LPILVKGV+TAEDAR+A
Sbjct: 182 NFEGIDLGKMDKANDSGLSSYVAGQIDRSLSWKDVAWLQTITSLPILVKGVITAEDARLA 241
Query: 217 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 276
VQ GAAGIIVSNHGARQLDYVPATIMALEEVVKA QGRIPVFLDGGVRRGTDVFKALALG
Sbjct: 242 VQHGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFLDGGVRRGTDVFKALALG 301
Query: 277 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 334
A+G+FIGRPVV+SLAAEGE GV++VL+M+R+EFEL MALSGCRSLKEI+R HI +WD
Sbjct: 302 AAGVFIGRPVVFSLAAEGEAGVKKVLQMMRDEFELTMALSGCRSLKEISRSHIAADWD 359
|
| >d1p4ca_ c.1.4.1 (A:) Membrane-associated (S)-mandelate dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Membrane-associated (S)-mandelate dehydrogenase species: Pseudomonas putida [TaxId: 303]
Score = 291 bits (746), Expect = 6e-98
Identities = 139/354 (39%), Positives = 209/354 (59%), Gaps = 27/354 (7%)
Query: 4 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNT 63
+ NV +Y +A+++LPKMV+DY GAED++ ++ NR+ F + F+P+ L+DVS+ +
Sbjct: 2 LFNVEDYRKLAQKRLPKMVYDYLEGGAEDEYGVKHNRDVFQQWRFKPKRLVDVSRRSLQA 61
Query: 64 TVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMV------------------ 105
VLG + SMP++I PT + P+G+ A ARAA+ AG V
Sbjct: 62 EVLGKRQSMPLLIGPTGLNGALWPKGDLALARAATKAGIPFVLSTASNMSIEDLARQCDG 121
Query: 106 -------YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNF 158
R + +V +A G+ + LT D G RE D+ NRF +PPFLTLKNF
Sbjct: 122 DLWFQLYVIHREIAQGMVLKALHTGYTTLVLTTDVAVNGYRERDLHNRFKIPPFLTLKNF 181
Query: 159 QGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQ 218
+G+DLGKMD+AN AA ++ Q+D S +W+ ++WL+ + +LVKG+L+AEDA +
Sbjct: 182 EGIDLGKMDKANLEMQAALMSRQMDASFNWEALRWLRDLWPHKLLVKGLLSAEDADRCIA 241
Query: 219 AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGAS 278
GA G+I+SNHG RQLD + + L + V + PV +D G RRG+D+ KALALGA
Sbjct: 242 EGADGVILSNHGGRQLDCAISPMEVLAQSVA--KTGKPVLIDSGFRRGSDIVKALALGAE 299
Query: 279 GIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTE 332
+ +GR +Y LAA GE GV VL +L+ + + +A GC + ++ D++ E
Sbjct: 300 AVLLGRATLYGLAARGETGVDEVLTLLKADIDRTLAQIGCPDITSLSPDYLQNE 353
|
| >d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 349 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Hydroxyacid oxidase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 285 bits (729), Expect = 2e-95
Identities = 150/353 (42%), Positives = 207/353 (58%), Gaps = 34/353 (9%)
Query: 4 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNT 63
+ + +++A A+++L K +D+ A+D T EN AF RI RPR L D+SK+D T
Sbjct: 2 LVCLADFKAHAQKQLSKTSWDFIEGEADDGITYSENIAAFKRIRLRPRYLRDMSKVDTRT 61
Query: 64 TVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMVY----------------- 106
T+ G +IS PI I+PTA +A P+GE +TARAA A V
Sbjct: 62 TIQGQEISAPICISPTAFHSIAWPDGEKSTARAAQEANICYVISSYASYSLEDIVAAAPE 121
Query: 107 ----------KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 156
D + Q+V+RAE GFKA+ +T+DTP LG R D +N+ L + LK
Sbjct: 122 GFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVLGNRRRDKRNQLNLEANILLK 181
Query: 157 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIA 216
+ + L K + S W D+ LQ+IT+LPI++KG+LT EDA +A
Sbjct: 182 DLRALKEEKP-------TQSVPVSFPKASFCWNDLSLLQSITRLPIILKGILTKEDAELA 234
Query: 217 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 276
++ GI+VSNHG RQLD V A+I AL EVV A +G+I V++DGGVR GTDV KALALG
Sbjct: 235 MKHNVQGIVVSNHGGRQLDEVSASIDALREVVAAVKGKIEVYMDGGVRTGTDVLKALALG 294
Query: 277 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHI 329
A IF+GRP+++ LA +GE GV+ VL++L E M LSGC+S+ EI+ D I
Sbjct: 295 ARCIFLGRPILWGLACKGEDGVKEVLDILTAELHRCMTLSGCQSVAEISPDLI 347
|
| >d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 414 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Flavocytochrome b2, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 285 bits (729), Expect = 2e-94
Identities = 135/379 (35%), Positives = 205/379 (54%), Gaps = 43/379 (11%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
+ I N+ ++E +A + L K + YY+SGA D+ T +EN NA+ RI F+P+IL+DV K+D
Sbjct: 22 LDNIINLYDFEYLASQTLTKQAWAYYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKVD 81
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHP-EGEYATARAASAAGTI---------------- 103
++T +LG + +P ++ TA+ K+ +P EGE AR T
Sbjct: 82 ISTDMLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEI 141
Query: 104 ---------------MVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFT 148
V DR + LV+ E+ G KA+ +TVD P LG+RE D+K +F+
Sbjct: 142 IEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFS 201
Query: 149 LPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVL 208
K + G + ++ ID SL+WKD++ L+ TKLPI++KGV
Sbjct: 202 NTKAGPKAMK------KTNVEESQGASRALSKFIDPSLTWKDIEELKKKTKLPIVIKGVQ 255
Query: 209 TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ-----GRIPVFLDGGV 263
ED A + G +G+++SNHG RQLD+ A I L E + + ++ VF+DGGV
Sbjct: 256 RTEDVIKAAEIGVSGVVLSNHGGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVFVDGGV 315
Query: 264 RRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKE 323
RRGTDV KAL LGA G+ +GRP +Y+ + G GV + +E+LR+E E++M L G S+ E
Sbjct: 316 RRGTDVLKALCLGAKGVGLGRPFLYANSCYGRNGVEKAIEILRDEIEMSMRLLGVTSIAE 375
Query: 324 ITRDHIVTEWDASLPRPVP 342
+ D + + VP
Sbjct: 376 LKPDLLDLSTLKARTVGVP 394
|
| >d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]} Length = 329 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Bacillus subtilis [TaxId: 1423]
Score = 177 bits (449), Expect = 1e-53
Identities = 61/327 (18%), Positives = 115/327 (35%), Gaps = 49/327 (14%)
Query: 41 NAFSRILFRPRIL--IDVSKIDMNTTVLGFKISMPIMIAP-TAMQKMAHPEGEYATARAA 97
I F L + + ++D++T + S PI I T E + ARAA
Sbjct: 3 TGLDDITFVHVSLPDLALEQVDISTKIGELSSSSPIFINAMTGGGGKLTYEINKSLARAA 62
Query: 98 SAAGTIMV----------YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRF 147
S AG + +R + + A + T + ++
Sbjct: 63 SQAGIPLAVGSQMSALKDPSERLSYEIVRKENPNGLIFANLGSEATAAQAKEAVEMIGAN 122
Query: 148 TLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGV 207
L L N G S + K ++ + + +P++VK V
Sbjct: 123 ALQIHL----------------NVIQEIVMPEGDRSFSGALKRIEQICSRVSVPVIVKEV 166
Query: 208 LT---AEDARIAVQAGAAGIIVSNHGARQLDYVPAT----------------IMALEEVV 248
A +AGAA + + +G + +L E+
Sbjct: 167 GFGMSKASAGKLYEAGAAAVDIGGYGGTNFSKIENLRRQRQISFFNSWGISTAASLAEIR 226
Query: 249 KATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREE 308
+ GG++ DV KA+ALGAS + + +L GE+G+ ++++ EE
Sbjct: 227 SEF-PASTMIASGGLQDALDVAKAIALGASCTGMAGHFLKALTDSGEEGLLEEIQLILEE 285
Query: 309 FELAMALSGCRSLKEITRDHIVTEWDA 335
+L M + G R++ ++ + +V + +
Sbjct: 286 LKLIMTVLGARTIADLQKAPLVIKGET 312
|
| >d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase {Thermus thermophilus [TaxId: 274]} Length = 310 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Thermus thermophilus [TaxId: 274]
Score = 170 bits (432), Expect = 2e-51
Identities = 59/309 (19%), Positives = 98/309 (31%), Gaps = 28/309 (9%)
Query: 38 ENRNAFSRILFRPRIL--IDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATAR 95
+ R + L + +S++D+ T LG + P +I + A A
Sbjct: 1 KTTTGLEGFRLRYQALAGLALSEVDLTTPFLGKTLKAPFLIGAMTGGEENGERINLALAE 60
Query: 96 AASAAGTIMVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTL 155
AA A G M+ + + + ++ + P+ + L
Sbjct: 61 AAEALGVGMM-----LGSGRILLERPEALRSFRVRKVAPKALLIANLGLAQLRRYGRDDL 115
Query: 156 KNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLT---AED 212
+ + + L V + P++VK V E
Sbjct: 116 LRLVEMLEADALAFHVNPLQEAVQRGDTDFRGLVERLAELLPLPFPVMVKEVGHGLSREA 175
Query: 213 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEV-----------------VKATQGRI 255
A A + V+ G V + E V+ +
Sbjct: 176 ALALRDLPLAAVDVAGAGGTSWARVEEWVRFGEVRHPELCEIGIPTARAILEVREVLPHL 235
Query: 256 PVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMAL 315
P+ GGV GTD KALALGA + + RP++ A EG + V + EE A+
Sbjct: 236 PLVASGGVYTGTDGAKALALGADLLAVARPLLR-PALEGAERVAAWIGDYLEELRTALFA 294
Query: 316 SGCRSLKEI 324
G R+ KE
Sbjct: 295 IGARNPKEA 303
|
| >d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Staphylococcus aureus [TaxId: 1280]
Score = 73.0 bits (178), Expect = 1e-15
Identities = 26/188 (13%), Positives = 57/188 (30%), Gaps = 8/188 (4%)
Query: 108 DRNVVAQLVRRAERAGFKAI-ALTVDTPRLGRREAD-----IKNRFTLPPFLTLKNFQGL 161
+++++ A G I A T + + D I R + +
Sbjct: 21 SSFIMSKMALAAYEGGAVGIRANTKEDILAIKETVDLPVIGIVKRDYDHSDVFITATSKE 80
Query: 162 DLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGA 221
++ + Q + + V +++T ++ + T E+A+ A + G
Sbjct: 81 VDELIESQCEVIALDATLQQRPKETLDELVSYIRTHAPNVEIMADIATVEEAKNAARLGF 140
Query: 222 AGIIVSNHGARQLDYVPATIMALEEVVK--ATQGRIPVFLDGGVRRGTDVFKALALGASG 279
I + HG + +K V +G V + + LG
Sbjct: 141 DYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVDAKVIAEGNVITPDMYKRVMDLGVHC 200
Query: 280 IFIGRPVV 287
+G +
Sbjct: 201 SVVGGAIT 208
|
| >d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Streptococcus pyogenes [TaxId: 1314]
Score = 72.2 bits (176), Expect = 2e-15
Identities = 26/192 (13%), Positives = 58/192 (30%), Gaps = 8/192 (4%)
Query: 100 AGTIMVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRRE-------ADIKNRFTLPPF 152
G + + ++ + + A+ AG I + IK +
Sbjct: 23 PGEPLYSETGGIMPLMAKAAQEAGAVGIRANSVRDIKEIQAITDLPIIGIIKKDYPPQEP 82
Query: 153 LTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED 212
+D + + D ++ ++ +L+ + T ++
Sbjct: 83 FITATMTEVDQLAALNIAVIAMDCTKRDRHDGLDIASFIRQVKEKYPNQLLMADISTFDE 142
Query: 213 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKA 272
+A QAG + + G A + + + I V +G + + K
Sbjct: 143 GLVAHQAGIDFVGTTLSGYTPYSRQEAGPD-VALIEALCKAGIAVIAEGKIHSPEEAKKI 201
Query: 273 LALGASGIFIGR 284
LG +GI +G
Sbjct: 202 NDLGVAGIVVGG 213
|
| >d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase, central and FMN domains {Azospirillum brasilense [TaxId: 192]} Length = 771 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Alpha subunit of glutamate synthase, central and FMN domains species: Azospirillum brasilense [TaxId: 192]
Score = 54.5 bits (131), Expect = 9e-09
Identities = 39/195 (20%), Positives = 63/195 (32%), Gaps = 47/195 (24%)
Query: 191 VKWLQTIT-KLPILVKGVLTAEDARIA---VQAGAAGIIVSNHGARQLDYVPATIM---- 242
+ L+ I + VK V + IA +A A I++S + P T +
Sbjct: 562 IYDLKQINPDAKVTVKLVSRSGIGTIAAGVAKANADIILISGNSG-GTGASPQTSIKFAG 620
Query: 243 -----ALEEVVKA-----TQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR-------- 284
L EV + + R+ + DGG++ G D+ A LGA IG
Sbjct: 621 LPWEMGLSEVHQVLTLNRLRHRVRLRTDGGLKTGRDIVIAAMLGAEEFGIGTASLIAMGC 680
Query: 285 -------------------PVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEIT 325
+ + V + L EE +A G RSL E+
Sbjct: 681 IMVRQCHSNTCPVGVCVQDDKLRQKFVGTPEKVVNLFTFLAEEVREILAGLGFRSLNEVI 740
Query: 326 -RDHIVTEWDASLPR 339
R ++ +
Sbjct: 741 GRTDLLHQVSRGAEH 755
|
| >d1ofda2 c.1.4.1 (A:431-1239) Alpha subunit of glutamate synthase, central and FMN domains {Synechocystis sp. [TaxId: 1143]} Length = 809 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Alpha subunit of glutamate synthase, central and FMN domains species: Synechocystis sp. [TaxId: 1143]
Score = 53.0 bits (127), Expect = 2e-08
Identities = 35/187 (18%), Positives = 58/187 (31%), Gaps = 47/187 (25%)
Query: 191 VKWLQTIT-KLPILVKGVLTAEDARIA---VQAGAAGIIVS-----NHGARQ--LDYV-- 237
+ L I + + VK V IA +A A I +S + + +
Sbjct: 589 IYDLHQINPEAQVSVKLVAEIGIGTIAAGVAKANADIIQISGHDGGTGASPLSSIKHAGS 648
Query: 238 PATIMALEEVVKA-----TQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR-------- 284
P + + EV + + R+ + DGG++ G DV A +GA G
Sbjct: 649 P-WELGVTEVHRVLMENQLRDRVLLRADGGLKTGWDVVMAALMGAEEYGFGSIAMIAEGC 707
Query: 285 -------------------PVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEIT 325
+ V + EE +A G RSL +I
Sbjct: 708 IMARVCHTNNCPVGVATQQERLRQRFKGVPGQVVNFFYFIAEEVRSLLAHLGYRSLDDII 767
Query: 326 -RDHIVT 331
R ++
Sbjct: 768 GRTDLLK 774
|
| >d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydropyrimidine dehydrogenase, domain 4 species: Pig (Sus scrofa) [TaxId: 9823]
Score = 40.7 bits (94), Expect = 1e-04
Identities = 13/73 (17%), Positives = 26/73 (35%), Gaps = 5/73 (6%)
Query: 238 PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKG 297
P + A+ + +A G P+ GG+ + L GAS + + V +
Sbjct: 240 PIALRAVTTIARALPG-FPILATGGIDSAESGLQFLHSGASVLQVCSAVQN----QDFTV 294
Query: 298 VRRVLEMLREEFE 310
++ L+
Sbjct: 295 IQDYCTGLKALLY 307
|
| >d1tv5a1 c.1.4.1 (A:158-566) Dihydroorotate dehydrogenase {Plasmodium falciparum [TaxId: 5833]} Length = 409 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Plasmodium falciparum [TaxId: 5833]
Score = 39.9 bits (92), Expect = 3e-04
Identities = 31/172 (18%), Positives = 55/172 (31%), Gaps = 30/172 (17%)
Query: 179 AGQIDRSLSWKDVKWLQTITKLPILVK------GVLTAEDARIAVQAGAAGIIVSN-HGA 231
+ + + + T K + VK E A + ++ G+I+SN
Sbjct: 246 NSHMMKDAKDNFLWFNTTKKKPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQ 305
Query: 232 RQLDYVPATIM--------------ALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGA 277
+ E+ T +IP+ GG+ G D + + GA
Sbjct: 306 INDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIPIIASGGIFSGLDALEKIEAGA 365
Query: 278 SGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEIT-RDH 328
S + +V+ G K ++ L + G +LKE R H
Sbjct: 366 SVCQLYSCLVF----NGMKSAVQIKRELNHL----LYQRGYYNLKEAIGRKH 409
|
| >d1juba_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme A [TaxId: 1358]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Lactococcus lactis, isozyme A [TaxId: 1358]
Score = 39.2 bits (90), Expect = 4e-04
Identities = 21/95 (22%), Positives = 36/95 (37%), Gaps = 8/95 (8%)
Query: 230 GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 289
G P + + + I + GG+ G D F+ L GA+ + IG +
Sbjct: 218 GIGGAYIKPTALANVRAFYTRLKPEIQIIGTGGIETGQDAFEHLLCGATMLQIGTALHK- 276
Query: 290 LAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEI 324
EG R+++ L E M G +S+ +
Sbjct: 277 ---EGPAIFDRIIKELEE----IMNQKGYQSIADF 304
|
| >d1d3ga_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 367 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.9 bits (84), Expect = 0.002
Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 9/84 (10%)
Query: 246 EVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEML 305
E+ TQGR+P+ GGV G D + + GAS + + + + G V +V L
Sbjct: 290 EMYALTQGRVPIIGVGGVSSGQDALEKIRAGASLVQLYTALTF----WGPPVVGKVKREL 345
Query: 306 REEFELAMALSGCRSLKEIT-RDH 328
+ G + + DH
Sbjct: 346 EAL----LKEQGFGGVTDAIGADH 365
|
| >d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]} Length = 365 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Streptococcus pyogenes [TaxId: 1314]
Score = 36.6 bits (84), Expect = 0.003
Identities = 53/269 (19%), Positives = 95/269 (35%), Gaps = 47/269 (17%)
Query: 43 FSRILFRP-RILIDVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAA 100
F +L P + +++D+ T + +++PI+ A M + A A + A
Sbjct: 14 FDDVLLIPAESHVLPNEVDLKTKLADNLTLNIPIITAA--MDTV----TGSKMAIAIARA 67
Query: 101 GTI------MVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT 154
G + M ++ + V+R+E A A+ V + R EA +
Sbjct: 68 GGLGVIHKNMSITEQAEEVRKVKRSEGRLLVAAAVGVTSDTFERAEALFEA--------- 118
Query: 155 LKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVL-TAEDA 213
G D +D A+ G L + ++ L+ G + TAE A
Sbjct: 119 -----GADAIVIDTAH---------GHSAGVLRK--IAEIRAHFPNRTLIAGNIATAEGA 162
Query: 214 RIAVQAGAAGIIVS------NHGARQLDYVPATIMALEEVVKATQGR-IPVFLDGGVRRG 266
R AG + V + A+ + + + DGG++
Sbjct: 163 RALYDAGVDVVKVGIGPGSICTTRVVAGVGVPQVTAIYDAAAVAREYGKTIIADGGIKYS 222
Query: 267 TDVFKALALGASGIFIGRPVVYSLAAEGE 295
D+ KALA G + + +G + A GE
Sbjct: 223 GDIVKALAAGGNAVMLGSMFAGTDEAPGE 251
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 344 | |||
| d1tb3a1 | 349 | Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxI | 100.0 | |
| d1goxa_ | 359 | Glycolate oxidase {Spinach (Spinacia oleracea) [Ta | 100.0 | |
| d1p4ca_ | 353 | Membrane-associated (S)-mandelate dehydrogenase {P | 100.0 | |
| d1kbia1 | 414 | Flavocytochrome b2, C-terminal domain {Baker's yea | 100.0 | |
| d1p0ka_ | 329 | Isopentenyl-diphosphate delta-isomerase {Bacillus | 100.0 | |
| d1vcfa1 | 310 | Isopentenyl-diphosphate delta-isomerase {Thermus t | 100.0 | |
| d1eepa_ | 388 | Inosine monophosphate dehydrogenase (IMPDH) {Lyme | 99.92 | |
| d1zfja1 | 365 | Inosine monophosphate dehydrogenase (IMPDH) {Strep | 99.9 | |
| d1jr1a1 | 378 | Inosine monophosphate dehydrogenase (IMPDH) {Chine | 99.9 | |
| d1vrda1 | 330 | Inosine monophosphate dehydrogenase (IMPDH) {Therm | 99.9 | |
| d1pvna1 | 362 | Inosine monophosphate dehydrogenase (IMPDH) {Tritr | 99.9 | |
| d1ea0a2 | 771 | Alpha subunit of glutamate synthase, central and F | 99.86 | |
| d2cu0a1 | 368 | Inosine monophosphate dehydrogenase (IMPDH) {Pyroc | 99.86 | |
| d1ofda2 | 809 | Alpha subunit of glutamate synthase, central and F | 99.84 | |
| d1gtea2 | 312 | Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su | 99.79 | |
| d1juba_ | 311 | Dihydroorotate dehydrogenase {Lactococcus lactis, | 99.77 | |
| d1d3ga_ | 367 | Dihydroorotate dehydrogenase {Human (Homo sapiens) | 99.74 | |
| d1ep3a_ | 311 | Dihydroorotate dehydrogenase {Lactococcus lactis, | 99.72 | |
| d1tv5a1 | 409 | Dihydroorotate dehydrogenase {Plasmodium falciparu | 99.64 | |
| d2b4ga1 | 312 | Dihydroorotate dehydrogenase {Trypanosoma brucei [ | 99.61 | |
| d1f76a_ | 336 | Dihydroorotate dehydrogenase {Escherichia coli [Ta | 99.42 | |
| d1yxya1 | 230 | Putative N-acetylmannosamine-6-phosphate 2-epimera | 99.36 | |
| d1y0ea_ | 222 | Putative N-acetylmannosamine-6-phosphate 2-epimera | 99.3 | |
| d1vhna_ | 305 | Putative flavin oxidoreducatase TM0096 {Thermotoga | 99.19 | |
| d1wa3a1 | 202 | KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | 98.75 | |
| d1mzha_ | 225 | Deoxyribose-phosphate aldolase DeoC {Aquifex aeoli | 98.7 | |
| d1o0ya_ | 251 | Deoxyribose-phosphate aldolase DeoC {Thermotoga ma | 98.66 | |
| d1ub3a_ | 211 | Deoxyribose-phosphate aldolase DeoC {Thermus therm | 98.64 | |
| d1n7ka_ | 234 | Deoxyribose-phosphate aldolase DeoC {Archaeon Aero | 98.61 | |
| d1z41a1 | 337 | NADPH dehydrogenase NamA {Bacillus subtilis [TaxId | 98.44 | |
| d1vhca_ | 212 | Hypothetical protein HI0047 {Haemophilus influenza | 98.33 | |
| d1vcva1 | 226 | Deoxyribose-phosphate aldolase DeoC {Archaeon Pyro | 98.3 | |
| d1wbha1 | 213 | KDPG aldolase {Escherichia coli [TaxId: 562]} | 98.24 | |
| d1xm3a_ | 251 | Thiazole biosynthesis protein ThiG {Bacillus subti | 98.22 | |
| d1ka9f_ | 251 | Cyclase subunit (or domain) of imidazoleglycerolph | 98.22 | |
| d1a53a_ | 247 | Indole-3-glycerophosphate synthase, IPGS {Archaeon | 98.22 | |
| d1qopa_ | 267 | Trp synthase alpha-subunit {Salmonella typhimurium | 98.18 | |
| d1thfd_ | 253 | Cyclase subunit (or domain) of imidazoleglycerolph | 98.17 | |
| d1djqa1 | 340 | Trimethylamine dehydrogenase, N-terminal domain {M | 98.17 | |
| d1h5ya_ | 252 | Cyclase subunit (or domain) of imidazoleglycerolph | 98.14 | |
| d1jvna1 | 323 | Cyclase subunit (or domain) of imidazoleglycerolph | 98.12 | |
| d1ps9a1 | 330 | 2,4-dienoyl-CoA reductase, N-terminal domain {Esch | 98.11 | |
| d1vc4a_ | 254 | Indole-3-glycerophosphate synthase, IPGS {Thermus | 98.1 | |
| d1wv2a_ | 243 | Thiazole biosynthesis protein ThiG {Pseudomonas ae | 98.03 | |
| d1rd5a_ | 261 | Trp synthase alpha-subunit {Maize (Zea mays) [TaxI | 98.01 | |
| d1vzwa1 | 239 | Phosphoribosylformimino-5-aminoimidazole carboxami | 98.01 | |
| d1i4na_ | 251 | Indole-3-glycerophosphate synthase, IPGS {Thermoto | 97.92 | |
| d1geqa_ | 248 | Trp synthase alpha-subunit {Archaeon Pyrococcus fu | 97.9 | |
| d1p1xa_ | 250 | Deoxyribose-phosphate aldolase DeoC {Escherichia c | 97.82 | |
| d1xi3a_ | 206 | Thiamin phosphate synthase {Archaeon (Pyrococcus f | 97.82 | |
| d1piia2 | 254 | Indole-3-glycerophosphate synthase, IPGS {Escheric | 97.8 | |
| d1mxsa_ | 216 | KDPG aldolase {Pseudomonas putida [TaxId: 303]} | 97.8 | |
| d1znna1 | 254 | Pyridoxal biosynthesis lyase PdxS {Bacillus stearo | 97.68 | |
| d1vyra_ | 363 | Pentaerythritol tetranirate reductase {Enterobacte | 97.62 | |
| d2tpsa_ | 226 | Thiamin phosphate synthase {Bacillus subtilis [Tax | 97.61 | |
| d1qo2a_ | 241 | Phosphoribosylformimino-5-aminoimidazole carboxami | 97.58 | |
| d1w0ma_ | 226 | Triosephosphate isomerase {Thermoproteus tenax [Ta | 97.47 | |
| d1hg3a_ | 224 | Triosephosphate isomerase {Archaeon Pyrococcus woe | 97.45 | |
| d1gwja_ | 374 | Morphinone reductase {Pseudomonas putida [TaxId: 3 | 97.41 | |
| d1qapa1 | 167 | Quinolinic acid phosphoribosyltransferase (Nicotin | 97.36 | |
| d1qpoa1 | 169 | Quinolinic acid phosphoribosyltransferase (Nicotin | 97.32 | |
| d1icpa_ | 364 | 12-oxophytodienoate reductase (OPR, OYE homolog) { | 97.15 | |
| d2flia1 | 217 | D-ribulose-5-phosphate 3-epimerase {Streptococcus | 97.11 | |
| d1l6wa_ | 220 | Decameric fructose-6-phosphate aldolase/transaldol | 97.08 | |
| d2a4aa1 | 256 | Fructose-1,6-bisphosphate aldolase {Plasmodium yoe | 97.03 | |
| d1q6oa_ | 213 | 3-keto-L-gulonate 6-phosphate decarboxylase {Esche | 97.03 | |
| d1vpxa_ | 218 | Decameric fructose-6-phosphate aldolase/transaldol | 97.01 | |
| d2czda1 | 206 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 96.89 | |
| d1q45a_ | 380 | 12-oxophytodienoate reductase (OPR, OYE homolog) { | 96.88 | |
| d1h5ya_ | 252 | Cyclase subunit (or domain) of imidazoleglycerolph | 96.85 | |
| d1o4ua1 | 170 | Quinolinic acid phosphoribosyltransferase (Nicotin | 96.85 | |
| d1thfd_ | 253 | Cyclase subunit (or domain) of imidazoleglycerolph | 96.84 | |
| d1ujpa_ | 271 | Trp synthase alpha-subunit {Thermus thermophilus [ | 96.8 | |
| d1ka9f_ | 251 | Cyclase subunit (or domain) of imidazoleglycerolph | 96.76 | |
| d1h1ya_ | 220 | D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sa | 96.7 | |
| d1wx0a1 | 211 | Decameric fructose-6-phosphate aldolase/transaldol | 96.63 | |
| d1wbha1 | 213 | KDPG aldolase {Escherichia coli [TaxId: 562]} | 96.49 | |
| d1vhca_ | 212 | Hypothetical protein HI0047 {Haemophilus influenza | 96.44 | |
| d1oyaa_ | 399 | Old yellow enzyme (OYE) {Lager yeast (Saccharomyce | 96.36 | |
| d1vzwa1 | 239 | Phosphoribosylformimino-5-aminoimidazole carboxami | 96.3 | |
| d1mxsa_ | 216 | KDPG aldolase {Pseudomonas putida [TaxId: 303]} | 96.28 | |
| d1tqxa_ | 221 | D-ribulose-5-phosphate 3-epimerase {Plasmodium fal | 96.11 | |
| d1rpxa_ | 230 | D-ribulose-5-phosphate 3-epimerase {Potato (Solanu | 95.87 | |
| d1km4a_ | 212 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 95.62 | |
| d1xxxa1 | 296 | Dihydrodipicolinate synthase {Mycobacterium tuberc | 95.53 | |
| d1xkya1 | 292 | Dihydrodipicolinate synthase {Bacillus anthracis [ | 95.5 | |
| d2a6na1 | 292 | Dihydrodipicolinate synthase {Escherichia coli [Ta | 95.5 | |
| d1jvna1 | 323 | Cyclase subunit (or domain) of imidazoleglycerolph | 95.41 | |
| d1ea0a2 | 771 | Alpha subunit of glutamate synthase, central and F | 95.38 | |
| d1qopa_ | 267 | Trp synthase alpha-subunit {Salmonella typhimurium | 95.33 | |
| d1tqja_ | 221 | D-ribulose-5-phosphate 3-epimerase {Synechocystis | 95.2 | |
| d1viza_ | 229 | PcrB protein homolog YerE {Bacillus subtilis [TaxI | 95.03 | |
| d1wa3a1 | 202 | KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | 94.98 | |
| d1eepa_ | 388 | Inosine monophosphate dehydrogenase (IMPDH) {Lyme | 94.97 | |
| d1geqa_ | 248 | Trp synthase alpha-subunit {Archaeon Pyrococcus fu | 94.87 | |
| d1eixa_ | 231 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 94.87 | |
| d1o5ka_ | 295 | Dihydrodipicolinate synthase {Thermotoga maritima | 94.78 | |
| d1ofda2 | 809 | Alpha subunit of glutamate synthase, central and F | 94.74 | |
| d1xm3a_ | 251 | Thiazole biosynthesis protein ThiG {Bacillus subti | 94.65 | |
| d1zfja1 | 365 | Inosine monophosphate dehydrogenase (IMPDH) {Strep | 94.55 | |
| d1qo2a_ | 241 | Phosphoribosylformimino-5-aminoimidazole carboxami | 94.4 | |
| d2f6ua1 | 231 | (S)-3-O-geranylgeranylglyceryl phosphate synthase | 94.04 | |
| d1vrda1 | 330 | Inosine monophosphate dehydrogenase (IMPDH) {Therm | 93.38 | |
| d1hl2a_ | 295 | N-acetylneuraminate lyase {Escherichia coli [TaxId | 93.13 | |
| d2p10a1 | 197 | Uncharacterized protein Mll9387 {Mesorhizobium lot | 93.05 | |
| d1pvna1 | 362 | Inosine monophosphate dehydrogenase (IMPDH) {Tritr | 92.53 | |
| d1f74a_ | 293 | N-acetylneuraminate lyase {Haemophilus influenzae | 92.05 | |
| d1ojxa_ | 251 | Archaeal fructose 1,6-bisphosphate aldolase {Archa | 91.9 | |
| d1onra_ | 316 | Transaldolase {Escherichia coli [TaxId: 562]} | 91.69 | |
| d1y0ea_ | 222 | Putative N-acetylmannosamine-6-phosphate 2-epimera | 91.16 | |
| d1ujpa_ | 271 | Trp synthase alpha-subunit {Thermus thermophilus [ | 90.88 | |
| d1vc4a_ | 254 | Indole-3-glycerophosphate synthase, IPGS {Thermus | 90.71 | |
| d1wv2a_ | 243 | Thiazole biosynthesis protein ThiG {Pseudomonas ae | 90.69 | |
| d1djqa1 | 340 | Trimethylamine dehydrogenase, N-terminal domain {M | 90.66 | |
| d1dbta_ | 237 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 90.58 | |
| d1s2wa_ | 275 | Phosphoenolpyruvate mutase {Blue mussel (Mytilus e | 90.5 | |
| d1twda_ | 247 | Copper homeostasis protein CutC {Shigella flexneri | 90.29 | |
| d1r0ma1 | 243 | N-acylamino acid racemase {Deinococcus radiodurans | 90.27 | |
| d1rd5a_ | 261 | Trp synthase alpha-subunit {Maize (Zea mays) [TaxI | 90.26 | |
| d1wufa1 | 244 | N-acylamino acid racemase {Listeria innocua [TaxId | 90.13 | |
| d1twda_ | 247 | Copper homeostasis protein CutC {Shigella flexneri | 89.93 | |
| d1muma_ | 289 | 2-methylisocitrate lyase {Escherichia coli [TaxId: | 89.92 | |
| d1gvfa_ | 284 | Tagatose-1,6-bisphosphate aldolase {Escherichia co | 89.6 | |
| d1jr1a1 | 378 | Inosine monophosphate dehydrogenase (IMPDH) {Chine | 89.48 | |
| d1yxya1 | 230 | Putative N-acetylmannosamine-6-phosphate 2-epimera | 89.39 | |
| d1to3a_ | 291 | Putative aldolase YihT {Salmonella typhimurium [Ta | 88.75 | |
| d2r25b1 | 128 | Response regulator Sin1 {Baker's yeast (Saccharomy | 88.6 | |
| d1ccwa_ | 137 | Glutamate mutase, small subunit {Clostridium cochl | 88.58 | |
| d1sjda1 | 242 | N-acylamino acid racemase {Amycolatopsis sp. [TaxI | 88.47 | |
| d1dxea_ | 253 | 2-dehydro-3-deoxy-galactarate aldolase {Escherichi | 87.83 | |
| d2cu0a1 | 368 | Inosine monophosphate dehydrogenase (IMPDH) {Pyroc | 87.16 | |
| d7reqa2 | 168 | Methylmalonyl-CoA mutase alpha subunit, C-terminal | 86.6 | |
| d1izca_ | 299 | Macrophomate synthase {Macrophoma commelinae [TaxI | 85.82 | |
| d1rvga_ | 305 | Fructose-bisphosphate aldolase (FBP aldolase) {The | 85.66 | |
| d1vr6a1 | 338 | 3-deoxy-D-arabino-heptulosonate-7-phosphate syntha | 85.41 | |
| d1wuea1 | 241 | N-acylamino acid racemase {Enterococcus faecalis [ | 85.12 | |
| d1rvga_ | 305 | Fructose-bisphosphate aldolase (FBP aldolase) {The | 84.88 | |
| d1i3ca_ | 144 | Response regulator for cyanobacterial phytochrome | 84.3 | |
| d1a53a_ | 247 | Indole-3-glycerophosphate synthase, IPGS {Archaeon | 84.29 | |
| d1piia2 | 254 | Indole-3-glycerophosphate synthase, IPGS {Escheric | 83.91 | |
| d1w3ia_ | 293 | 2-keto-3-deoxy gluconate aldolase Eda {Sulfolobus | 83.23 | |
| d1i4na_ | 251 | Indole-3-glycerophosphate synthase, IPGS {Thermoto | 81.63 | |
| d1f61a_ | 418 | Isocitrate lyase {Mycobacterium tuberculosis [TaxI | 81.57 | |
| d1xhfa1 | 121 | Aerobic respiration control protein ArcA, N-termin | 81.33 | |
| d1dz3a_ | 123 | Sporulation response regulator Spo0A {Bacillus ste | 80.43 | |
| d1jbea_ | 128 | CheY protein {Escherichia coli [TaxId: 562]} | 80.08 | |
| d1u0sy_ | 118 | CheY protein {Thermotoga maritima [TaxId: 2336]} | 80.04 |
| >d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Hydroxyacid oxidase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=2.3e-69 Score=519.89 Aligned_cols=320 Identities=47% Similarity=0.740 Sum_probs=287.9
Q ss_pred CCChHHHHHHHHHhCCccchhhhcCccccchHHHHhHhcccccceeecccCCCCCCCcceeecccccccceeeccccccc
Q 019244 4 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQK 83 (344)
Q Consensus 4 ~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~f~~i~l~pr~l~~~~~vd~st~l~g~~l~~Pi~iapm~~~~ 83 (344)
++|++|||+.||++||+.+|+|++||++||.|+++|+.+||+|+|+||+|++++++||+|+|||+++++||+|+||+++.
T Consensus 2 ~~~i~d~~~~A~~~lp~~~~~y~~~ga~de~t~~~N~~aFd~i~l~pr~L~d~~~idlst~~lG~~l~~P~~Iapmtgg~ 81 (349)
T d1tb3a1 2 LVCLADFKAHAQKQLSKTSWDFIEGEADDGITYSENIAAFKRIRLRPRYLRDMSKVDTRTTIQGQEISAPICISPTAFHS 81 (349)
T ss_dssp CCSHHHHHHHHHHTSCHHHHHHHHCCCTTCHHHHHHHHHHHHCCBCCCCSSCCSSCBCCEEETTEEESSSEEECCCSCGG
T ss_pred cccHHHHHHHHHHHCCHHHHHHHhccccccHHHHHHHHHHHhccEEcccccCCCCCCCceeECCcCccceEEEcchhccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCChhhHHHHHHHHHcCCcc---------------------------ccCCHHHHHHHHHHHHHcCCcEEEeccCCccc
Q 019244 84 MAHPEGEYATARAASAAGTIM---------------------------VYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 136 (344)
Q Consensus 84 ~~~~~~~~~lA~aA~~~g~~~---------------------------~~~d~~~~~~~i~~a~~ag~~~l~~tvd~~~~ 136 (344)
..++++|..+|++|+++|++| .+++++...+++++++++|++++++|+|.|..
T Consensus 82 ~~~~~~~~~lA~aA~~~g~~~~~~s~s~~~~e~v~~~~~~~~~~~ql~~~~~~~~~~~~i~~~~~~g~~a~~~tvd~~~~ 161 (349)
T d1tb3a1 82 IAWPDGEKSTARAAQEANICYVISSYASYSLEDIVAAAPEGFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVL 161 (349)
T ss_dssp GTCTTTHHHHHHHHHHHTCCEEECTTCSSCHHHHHHHSTTCCEEEECCCCSCTTHHHHHHHHHHHHTCCCEEEECSCSSC
T ss_pred ccccchhhHHHHhhhhcccceeecccccccchhhhhhccCCCeeeeeecccCHHHHHHHHHHHHhcCCcccccccCchhh
Confidence 999999999999999999999 35688888999999999999999999999999
Q ss_pred cccHHHHHhhcCCCCcccccccccccccccccccchhhHHHHhhcCCCCCcHHHHHHHHHhcCCcEEEEeecCHHHHHHH
Q 019244 137 GRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIA 216 (344)
Q Consensus 137 g~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~PvivK~v~~~~~a~~~ 216 (344)
++|+++.+++|.+|......++..+..... .........++.++|++++|+++.+++|+++|++.+++++..+
T Consensus 162 ~~~~~d~r~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~Kgi~~~~da~~a 234 (349)
T d1tb3a1 162 GNRRRDKRNQLNLEANILLKDLRALKEEKP-------TQSVPVSFPKASFCWNDLSLLQSITRLPIILKGILTKEDAELA 234 (349)
T ss_dssp CCCHHHHHTTCCCCC----CCSCCCCC--------------------CCCCHHHHHHHHTTCCSCEEEEEECSHHHHHHH
T ss_pred cchhhhhhccccCCcccchhhhhhhhhccc-------cccccccccCCCCCHHHHHHHHHhcCCCcccchhhhhHHHHHH
Confidence 999999999988776544443332211100 0001112234677999999999999999999999999999999
Q ss_pred HHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcChH
Q 019244 217 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEK 296 (344)
Q Consensus 217 ~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~ 296 (344)
.++|+|+|+||||||+++++++++++.|+++++.+++++|||+|||||+|.||+|||+|||++|++|||++|++++.|++
T Consensus 235 ~~~G~d~i~vsnhggr~~d~~~~~~~~l~~i~~~~~~~~~iiadGGIR~G~Dv~KALALGA~~V~igrp~L~~la~~G~~ 314 (349)
T d1tb3a1 235 MKHNVQGIVVSNHGGRQLDEVSASIDALREVVAAVKGKIEVYMDGGVRTGTDVLKALALGARCIFLGRPILWGLACKGED 314 (349)
T ss_dssp HHTTCSEEEECCGGGTSSCSBCCHHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCSCEEESHHHHHHHHHHHHH
T ss_pred HHhhccceeeeccccccccccccchhhcceeeeccCCCeeEEeccCcCcHHHHHHHHHcCCCEEEEChHHHHHHHhccHH
Confidence 99999999999999999999999999999999999889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHhhhccccee
Q 019244 297 GVRRVLEMLREEFELAMALSGCRSLKEITRDHIV 330 (344)
Q Consensus 297 ~v~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l~ 330 (344)
||.++++.|++||+.+|.++|+++++||+++.+.
T Consensus 315 gv~~~l~~l~~EL~~~M~l~G~~~i~eL~~~~i~ 348 (349)
T d1tb3a1 315 GVKEVLDILTAELHRCMTLSGCQSVAEISPDLIQ 348 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSBGGGCCGGGBC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHcCHhhee
Confidence 9999999999999999999999999999988764
|
| >d1goxa_ c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Glycolate oxidase species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=100.00 E-value=1.9e-67 Score=508.16 Aligned_cols=330 Identities=89% Similarity=1.346 Sum_probs=300.2
Q ss_pred CCChHHHHHHHHHhCCccchhhhcCccccchHHHHhHhcccccceeecccCCCCCCCcceeecccccccceeeccccccc
Q 019244 4 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQK 83 (344)
Q Consensus 4 ~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~f~~i~l~pr~l~~~~~vd~st~l~g~~l~~Pi~iapm~~~~ 83 (344)
++|++|||+.||++||+++|+|+.||++||.|+++|+++||+|+|+||+|++++++||||+|||+++++||+|||||+++
T Consensus 3 ~~~i~d~~~~A~~~lp~~~~~y~~gga~~~~t~~~N~~~Fd~i~l~pr~L~d~~~iDlst~~lG~~~~~P~~IspMtgg~ 82 (359)
T d1goxa_ 3 ITNVNEYEAIAKQKLPKMVYDYYASGAEDQWTLAENRNAFSRILFRPRILIDVTNIDMTTTILGFKISMPIMIAPTAMQK 82 (359)
T ss_dssp CCSTTHHHHHHHHHSCHHHHHHHHCCSTTCHHHHHHHHGGGGEEECCCCSCCCSCCBCCEEETTEEESSSEEECCCSCGG
T ss_pred ccCHHHHHHHHHHhCCHHHHHHHhccCCccHHHHHHHHHHHhcceecccccCCCCCCCceeECCcccCCceeeccccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCChhhHHHHHHHHHcCCcc--------------------------ccCCHHHHHHHHHHHHHcCCcEEEeccCCcccc
Q 019244 84 MAHPEGEYATARAASAAGTIM--------------------------VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLG 137 (344)
Q Consensus 84 ~~~~~~~~~lA~aA~~~g~~~--------------------------~~~d~~~~~~~i~~a~~ag~~~l~~tvd~~~~g 137 (344)
..++++|..+|++|+++|++| ..++......++++++.++++++++|+|.+..+
T Consensus 83 ~~~~~~e~~lA~aA~~~gi~~~~~s~s~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~~~vd~~~~~ 162 (359)
T d1goxa_ 83 MAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLG 162 (359)
T ss_dssp GTCTTHHHHHHHHHHHTTCCEEECTTCSSCHHHHHTTCCCCEEEEECCBSSHHHHHHHHHHHHHTTCCEEEEECSCSSCC
T ss_pred cCCCchHHHhhhhHHhhCCcccccccccccchhhHHhcCCCcccccccchhHHHHHHHHHHHHHhhcccccccccchhhh
Confidence 999999999999999999999 356888888999999999999999999999999
Q ss_pred ccHHHHHhhcCCCCcccccccccccccccccccchhhHHHHhhcCCCCCcHHHHHHHHHhcCCcEEEEeecCHHHHHHHH
Q 019244 138 RREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAV 217 (344)
Q Consensus 138 ~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~PvivK~v~~~~~a~~~~ 217 (344)
.++.+.++++..|......+...............+....+..+.++.++|++++++++.++.|+++|++.+.+++..+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~kg~~~~~da~~a~ 242 (359)
T d1goxa_ 163 RREADIKNRFVLPPFLTLKNFEGIDLGKMDKANDSGLSSYVAGQIDRSLSWKDVAWLQTITSLPILVKGVITAEDARLAV 242 (359)
T ss_dssp CCHHHHHTTCCCCTTCCCGGGSSSCCC---------HHHHHHHTBCTTCCHHHHHHHHHHCCSCEEEECCCSHHHHHHHH
T ss_pred hhhhhccccccCCcccchhhhhhhccccCcccccccHHHHHHhhcCCCCCHHHHHHHHhhcccceeeecccchHHHHHHH
Confidence 99999999988777666555443322211111222334455566778899999999999999999999999999999999
Q ss_pred HcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcChHH
Q 019244 218 QAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKG 297 (344)
Q Consensus 218 ~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~~ 297 (344)
+.|++++.++||||+++++++++.+.|+++++.+++++|||+|||||+|.||+|||+||||+|++|||+||+++..|++|
T Consensus 243 ~~g~~~~~vsnhggr~ld~~~~~~~~l~~i~~~~~~~~~iiadGGIR~G~Di~KALaLGAd~vgigrp~L~~la~~g~~g 322 (359)
T d1goxa_ 243 QHGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFLDGGVRRGTDVFKALALGAAGVFIGRPVVFSLAAEGEAG 322 (359)
T ss_dssp HTTCSEEEECCGGGTSSTTCCCHHHHHHHHHHHTTTSSCEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHH
T ss_pred HccccceecccccccccccccchhhhchhhhhccCCccceeeccCcCcHHHHHHHHHcCCCEEEEcHHHHHHHHhccHHH
Confidence 99999999999999999999999999999999988899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCHhhhcccceeecc
Q 019244 298 VRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEW 333 (344)
Q Consensus 298 v~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l~~~~ 333 (344)
|+++|+.|++||+.+|.++|++|++||++.+|+...
T Consensus 323 v~~~i~~l~~EL~~~M~l~G~~~i~~L~~~~l~~~~ 358 (359)
T d1goxa_ 323 VKKVLQMMRDEFELTMALSGCRSLKEISRSHIAADW 358 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSBTTTCCGGGEEETT
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHcCHhhccCCC
Confidence 999999999999999999999999999999987543
|
| >d1p4ca_ c.1.4.1 (A:) Membrane-associated (S)-mandelate dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Membrane-associated (S)-mandelate dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=100.00 E-value=5.5e-64 Score=482.21 Aligned_cols=327 Identities=42% Similarity=0.757 Sum_probs=292.5
Q ss_pred CCCChHHHHHHHHHhCCccchhhhcCccccchHHHHhHhcccccceeecccCCCCCCCcceeecccccccceeecccccc
Q 019244 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQ 82 (344)
Q Consensus 3 ~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~f~~i~l~pr~l~~~~~vd~st~l~g~~l~~Pi~iapm~~~ 82 (344)
.++|+.|||+.||++||++.|+|++||++||.|+++|+.+||+|+|+||+|+|+++|||+|+|||+++++||+|+||+++
T Consensus 1 ~~~~~~d~~~~a~~~~p~~~~~y~~~ga~~~~t~~~N~~aFd~i~l~pr~L~d~~~idlst~~lGk~ls~Pi~Iapmtgg 80 (353)
T d1p4ca_ 1 NLFNVEDYRKLAQKRLPKMVYDYLEGGAEDEYGVKHNRDVFQQWRFKPKRLVDVSRRSLQAEVLGKRQSMPLLIGPTGLN 80 (353)
T ss_dssp CCSSHHHHHHHHHHHSCHHHHHHHHCCSTTCHHHHHHHHGGGGEEECCCCSCCCSSCBCCEEETTEEESSSEEECCCSCG
T ss_pred CCCCHHHHHHHHHHhCCHHHHHHHhccccchHHHHHHHHHHHhCcEEcccccCCCCCCCceEECCcCccCceeecccccc
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCChhhHHHHHHHHHcCCcc-------------------------ccCCHHHHHHHHHHHHHcCCcEEEeccCCcccc
Q 019244 83 KMAHPEGEYATARAASAAGTIM-------------------------VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLG 137 (344)
Q Consensus 83 ~~~~~~~~~~lA~aA~~~g~~~-------------------------~~~d~~~~~~~i~~a~~ag~~~l~~tvd~~~~g 137 (344)
+..++.+|..+|++|+++|++| ...++.....++++++.+|++.+++++|.|..+
T Consensus 81 ~~~~~~~n~~lA~aA~~~~i~~~~gs~s~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~~~vd~~~~g 160 (353)
T d1p4ca_ 81 GALWPKGDLALARAATKAGIPFVLSTASNMSIEDLARQCDGDLWFQLYVIHREIAQGMVLKALHTGYTTLVLTTDVAVNG 160 (353)
T ss_dssp GGTSTTHHHHHHHHHHHHTCCEEECTTCSSCHHHHHHHCCSCEEEEECCSSHHHHHHHHHHHHHTTCCEEEEECSCSSCC
T ss_pred ccccchhhHHHHHHHHHhhccccccccccccchhHHHhcCCceeeeeccccHHHHHHhHHHHHHcCCcceeeeccccccC
Confidence 9999999999999999999999 235677778899999999999999999999999
Q ss_pred ccHHHHHhhcCCCCcccccccccccccccccccchhhHHHHhhcCCCCCcHHHHHHHHHhcCCcEEEEeecCHHHHHHHH
Q 019244 138 RREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAV 217 (344)
Q Consensus 138 ~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~PvivK~v~~~~~a~~~~ 217 (344)
.++.+.++++..|..........................++..+.++.++|+.++++++.++.|+++|++.+.+++..+.
T Consensus 161 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~i~~kgv~~~~~~~~a~ 240 (353)
T d1p4ca_ 161 YRERDLHNRFKIPPFLTLKNFEGIDLGKMDKANLEMQAALMSRQMDASFNWEALRWLRDLWPHKLLVKGLLSAEDADRCI 240 (353)
T ss_dssp CCHHHHHHTCCCCTTCCCGGGTTCCCSCCSSTTTTTHHHHTSSCCCTTCCHHHHHHHHHHCCSEEEEEEECCHHHHHHHH
T ss_pred cchhhhhhhhcccchhhhhhhhhhccccccccccchhHHHHHhccCCCCCHHHHHHHHhccccchhhhcchhhhhHHHHH
Confidence 99999999887766544433322211111111111223455566777889999999999999999999999999999999
Q ss_pred HcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcChHH
Q 019244 218 QAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKG 297 (344)
Q Consensus 218 ~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~~ 297 (344)
+.|++++.+++|||+++++.+++...+++++... ++|||+|||||+|.||+|||+||||+|++||||+|+++..|+++
T Consensus 241 ~~g~~~~~~s~~gg~~~~~~~~~~~~l~~i~~~~--~~~viasGGIR~G~Dv~KALaLGAd~vgigrp~L~~l~~~G~eg 318 (353)
T d1p4ca_ 241 AEGADGVILSNHGGRQLDCAISPMEVLAQSVAKT--GKPVLIDSGFRRGSDIVKALALGAEAVLLGRATLYGLAARGETG 318 (353)
T ss_dssp HTTCSEEEECCGGGTSCTTCCCGGGTHHHHHHHH--CSCEEECSSCCSHHHHHHHHHTTCSCEEESHHHHHHHHHHHHHH
T ss_pred hcCCchhhhcccccccccccccchhcccchhccc--ccceeecCCcCchHHHHHHHHcCCCEEEEcHHHHHHHHhccHHH
Confidence 9999999999999999999999999999988765 78999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCHhhhcccceee
Q 019244 298 VRRVLEMLREEFELAMALSGCRSLKEITRDHIVT 331 (344)
Q Consensus 298 v~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l~~ 331 (344)
|+++++.|++||+.+|.++|+++++||++..|..
T Consensus 319 v~~~l~~l~~El~~~M~l~G~~~i~eL~~~~l~~ 352 (353)
T d1p4ca_ 319 VDEVLTLLKADIDRTLAQIGCPDITSLSPDYLQN 352 (353)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCBGGGCCGGGEEE
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHcCHHhccC
Confidence 9999999999999999999999999999988764
|
| >d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Flavocytochrome b2, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.3e-63 Score=489.76 Aligned_cols=328 Identities=39% Similarity=0.673 Sum_probs=280.3
Q ss_pred CCCCCChHHHHHHHHHhCCccchhhhcCccccchHHHHhHhcccccceeecccCCCCCCCcceeecccccccceeecccc
Q 019244 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTA 80 (344)
Q Consensus 1 ~~~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~f~~i~l~pr~l~~~~~vd~st~l~g~~l~~Pi~iapm~ 80 (344)
|++++|++|||+.||++||+++|+|++||++||.|+++|+++||+|+|+||+|+|+++|||||+|||+++++||+|||||
T Consensus 22 ~~~~~~~~d~~~~A~~~lp~~~~~y~~~ga~~e~t~~~N~~aFd~i~l~Pr~L~dvs~iDlst~~lG~~l~~P~~Isp~g 101 (414)
T d1kbia1 22 LDNIINLYDFEYLASQTLTKQAWAYYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKVDISTDMLGSHVDVPFYVSATA 101 (414)
T ss_dssp GGGCCSHHHHHHHHHHHSCHHHHHHHHCCSTTCHHHHHHHHGGGGCEECCCCSCCCSSCBCCEEETTEEESSSEEECCCS
T ss_pred hhhcCCHHHHHHHHHHhCCHHHHHHHhccccchHHHHHHHHHHHhceeeccccCCCcCCCCceeECCccCCCCEEEChhh
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCh-hhHH--HHHHHHHcCCcc-----------------------------ccCCHHHHHHHHHHHHHcCCcEEE
Q 019244 81 MQKMAHPE-GEYA--TARAASAAGTIM-----------------------------VYKDRNVVAQLVRRAERAGFKAIA 128 (344)
Q Consensus 81 ~~~~~~~~-~~~~--lA~aA~~~g~~~-----------------------------~~~d~~~~~~~i~~a~~ag~~~l~ 128 (344)
++++.|+. .+.+ +|+++...|+++ ...++.....++++++++|+++++
T Consensus 102 ~~~~~~~~~~~~~~A~a~aa~~~~~~~~ls~~~~~~~~~~~~~a~~~~~~~~~q~y~~~~~~~~~~l~~ra~~ag~~al~ 181 (414)
T d1kbia1 102 LCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEIIEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALF 181 (414)
T ss_dssp CGGGTCTTTTHHHHHHHHHSSSSCCCEEECTTCSSCHHHHHHTCCCSSCCEEEEECCCSSHHHHHHHHHHHHHHTCSCEE
T ss_pred hhcccCcchhHHHHHhhHHHhhhccccccccccccchHHHHHHhcCCccchhhcccccccHHHHHHHHHHHHHcCCcccc
Confidence 99998873 3444 444445567776 246888899999999999999999
Q ss_pred eccCCccccccHHHHHhhcCCCCcccccccccccccccccccchhhHHHHhhcCCCCCcHHHHHHHHHhcCCcEEEEeec
Q 019244 129 LTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVL 208 (344)
Q Consensus 129 ~tvd~~~~g~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~PvivK~v~ 208 (344)
+|+|.|.+++|++|.+..+..+...... ... .... ...+....+....+..++|++++|++..++.|+++|++.
T Consensus 182 ~tvD~~~~g~re~d~~~~~~~~~~~~~~-~~~---~~~~--~~~~~~~~i~~~~~~~l~~~~i~~i~~~~~~~~i~kgi~ 255 (414)
T d1kbia1 182 VTVDAPSLGQREKDMKLKFSNTKAGPKA-MKK---TNVE--ESQGASRALSKFIDPSLTWKDIEELKKKTKLPIVIKGVQ 255 (414)
T ss_dssp EECSCSSCCCCHHHHHHHHTTCC--------C---CCCS--SCCCGGGGCBTTBCTTCCHHHHHHHHHHCSSCEEEEEEC
T ss_pred cccccccccccHHHHHhcccccccchhh-hhc---cccc--ccccHHHHHHHhcccCCCHHHHHHHhccCCceEEeeccc
Confidence 9999999999999998876433211110 000 0000 001111223334556789999999999999999999999
Q ss_pred CHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHc-----cCCCcEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 019244 209 TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT-----QGRIPVFLDGGVRRGTDVFKALALGASGIFIG 283 (344)
Q Consensus 209 ~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~-----~~~~~via~GGIr~g~dv~kalalGAd~V~ig 283 (344)
+.+++..+.++|+++++++||||+++++.+++...++++.+.+ .+++|||+|||||+|.||+|||+||||+|+||
T Consensus 256 ~~~da~~~~~~G~~~i~vsnhggr~~d~~~~~~~~l~~i~~~~~~~~v~~~~~viadGGIR~G~DVaKALALGAdaVgig 335 (414)
T d1kbia1 256 RTEDVIKAAEIGVSGVVLSNHGGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLG 335 (414)
T ss_dssp SHHHHHHHHHTTCSEEEECCTTTTSSTTCCCHHHHHHHHHHHHHTTTCBTTBEEEEESSCCSHHHHHHHHHHTCSEEEEC
T ss_pred hhHHHHHHHhcCCcceeeccccccccccccccccchhhhhhhhhhhccCCceeEEecCCcCcHHHHHHHHHcCCCEEEEc
Confidence 9999999999999999999999999999999998888887653 45799999999999999999999999999999
Q ss_pred hHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHhhhcccceeeccC
Q 019244 284 RPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 334 (344)
Q Consensus 284 ~~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l~~~~~ 334 (344)
|||||++++.|+++|.++++.|++||+.+|.++|++|++||+++.|.....
T Consensus 336 rp~L~~la~~G~egv~~~l~~l~~EL~~~M~l~G~~si~eL~~~~l~~~~~ 386 (414)
T d1kbia1 336 RPFLYANSCYGRNGVEKAIEILRDEIEMSMRLLGVTSIAELKPDLLDLSTL 386 (414)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCBGGGCCGGGEECTTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhCCCCHHHcCHHHcccccc
Confidence 999999999999999999999999999999999999999999998876543
|
| >d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=1.4e-44 Score=343.52 Aligned_cols=275 Identities=23% Similarity=0.299 Sum_probs=196.5
Q ss_pred hcccccceeeccc--CCCCCCCcceeecccccccceeeccccc-ccccCChhhHHHHHHHHHcCCccc-------cCCHH
Q 019244 41 NAFSRILFRPRIL--IDVSKIDMNTTVLGFKISMPIMIAPTAM-QKMAHPEGEYATARAASAAGTIMV-------YKDRN 110 (344)
Q Consensus 41 ~~f~~i~l~pr~l--~~~~~vd~st~l~g~~l~~Pi~iapm~~-~~~~~~~~~~~lA~aA~~~g~~~~-------~~d~~ 110 (344)
.+||+|+|+|++| .|+++|||+|+|+|+++++||++|||++ ....++.++.++|++|++.|+++. ..++.
T Consensus 3 tgfddi~lvP~~l~~~d~~~vdlst~i~G~~l~~Pi~is~Ms~g~~~~~~~~~~alA~aA~~~g~~~~~~~~~~~~~~~~ 82 (329)
T d1p0ka_ 3 TGLDDITFVHVSLPDLALEQVDISTKIGELSSSSPIFINAMTGGGGKLTYEINKSLARAASQAGIPLAVGSQMSALKDPS 82 (329)
T ss_dssp CSGGGEEECCCSCCCCCGGGCBCCEEETTEEESCSEEEECCCCSCHHHHHHHHHHHHHHHHHHTCCEECCCCTTTTTCHH
T ss_pred CCcceEEEECCCCCCCChhhCCCCEEECCEEcCCceEECCHHHhhhhccHHHHHHHHHHHHHcCCCeecccccccchhHH
Confidence 3699999999999 4788999999999999999999999954 444567789999999999999992 22232
Q ss_pred HHHHH--HHHHHHcCCcEEEeccCCccccccHHHHHhhcCCCCcccccccccccccccccccchhhHHHHhhcCC--CCC
Q 019244 111 VVAQL--VRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQID--RSL 186 (344)
Q Consensus 111 ~~~~~--i~~a~~ag~~~l~~tvd~~~~g~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 186 (344)
....+ .+......+.......+.... .........+. +. +..+ ....++......+ ...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~---------~a-----i~~~-~~~~~~~~~~~~~~~~~~ 145 (329)
T d1p0ka_ 83 ERLSYEIVRKENPNGLIFANLGSEATAA--QAKEAVEMIGA---------NA-----LQIH-LNVIQEIVMPEGDRSFSG 145 (329)
T ss_dssp HHHHHHHHHHHCSSSCEEEEEETTCCHH--HHHHHHHHTTC---------SE-----EEEE-ECTTTTC--------CTT
T ss_pred HHhhhhhHhhhCCcceEEEeeccchhHH--HHHHHHHHcCC---------CE-----EEec-ccccchhhhccccccccc
Confidence 22221 111111112222222221111 11111111000 00 0000 0000111111122 233
Q ss_pred cHHHHHHHHHhcCCcEEEEee---cCHHHHHHHHHcCCcEEEEccCCCCCCC----------------CchhhHHHHHHH
Q 019244 187 SWKDVKWLQTITKLPILVKGV---LTAEDARIAVQAGAAGIIVSNHGARQLD----------------YVPATIMALEEV 247 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v---~~~~~a~~~~~~G~d~I~v~~~gG~~~~----------------~g~~~~~~l~~i 247 (344)
.|+.++++++.++.|+++|++ .++++++.+.++|+|+|+|+||||++++ ++++.+..+.++
T Consensus 146 ~~~~i~~i~~~~~~~vivk~v~~~~~~~~a~~~~~~GaD~i~v~~~gG~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~ 225 (329)
T d1p0ka_ 146 ALKRIEQICSRVSVPVIVKEVGFGMSKASAGKLYEAGAAAVDIGGYGGTNFSKIENLRRQRQISFFNSWGISTAASLAEI 225 (329)
T ss_dssp HHHHHHHHHHHCSSCEEEEEESSCCCHHHHHHHHHHTCSEEEEEC---------------CCGGGGTTCSCCHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCcEEEecCCcchHHHHHHHHhcCCCEEEEcCCCCCCccccchhhcccCccchhHhHHHHHHHHHHH
Confidence 688999999999999999998 6899999999999999999999997643 356778888888
Q ss_pred HHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHhhhccc
Q 019244 248 VKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRD 327 (344)
Q Consensus 248 ~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~~~i~~l~~~ 327 (344)
.... +++|||+|||||+|.|++|||+||||+|++||+++|++++.|++||.++++.|++||+..|.++|++|++||++.
T Consensus 226 ~~~~-~~v~viadGGIr~g~Dv~KAlalGAdaV~iGr~~l~al~~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~el~~~ 304 (329)
T d1p0ka_ 226 RSEF-PASTMIASGGLQDALDVAKAIALGASCTGMAGHFLKALTDSGEEGLLEEIQLILEELKLIMTVLGARTIADLQKA 304 (329)
T ss_dssp HHHC-TTSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCBHHHHTTC
T ss_pred Hhhc-CCceEEEcCCcccHHHHHHHHHcCCCchhccHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhCcC
Confidence 7765 479999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeecc
Q 019244 328 HIVTEW 333 (344)
Q Consensus 328 ~l~~~~ 333 (344)
+++..+
T Consensus 305 ~lv~~~ 310 (329)
T d1p0ka_ 305 PLVIKG 310 (329)
T ss_dssp CEEECH
T ss_pred CEEecc
Confidence 887654
|
| >d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=4.7e-42 Score=322.38 Aligned_cols=274 Identities=24% Similarity=0.254 Sum_probs=195.5
Q ss_pred HhHhcccccceeecccC--CCCCCCcceeecccccccceeecccccccccCChhhHHHHHHHHHcCCccccC-------C
Q 019244 38 ENRNAFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMVYK-------D 108 (344)
Q Consensus 38 ~n~~~f~~i~l~pr~l~--~~~~vd~st~l~g~~l~~Pi~iapm~~~~~~~~~~~~~lA~aA~~~g~~~~~~-------d 108 (344)
+|+.+|++|+|+||+|+ ++++|||||+|+|+++++||++|||+++...++.++.++|++|++.|++++.. +
T Consensus 1 ~n~~~f~~~~~~p~~L~~~d~~~vDlst~~~G~~l~~Pi~iapm~~~~~~~~~~~~~lA~aA~~~g~~~~~~~~~~~~~~ 80 (310)
T d1vcfa1 1 KTTTGLEGFRLRYQALAGLALSEVDLTTPFLGKTLKAPFLIGAMTGGEENGERINLALAEAAEALGVGMMLGSGRILLER 80 (310)
T ss_dssp CCCCSGGGEEECCCTTCCCCGGGCCCCEEETTEEESSSEEECCCC---CCHHHHHHHHHHHHHHHTCEEEEEECHHHHHC
T ss_pred CCcccccceEEEcccCCCCCcccCcCCeEECCEEcCCCEEEcChhhhhhhhhHHHHHHHHHHHHcCCCeEeccchhcchh
Confidence 58999999999999996 78899999999999999999999999887777778899999999999999322 1
Q ss_pred HHHHHHH-HHHHHHcCCcEEEeccCCccccccHHHHHhhcCCCCcccccccccccccccccccchhhHHHHhhcCCCCC-
Q 019244 109 RNVVAQL-VRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL- 186 (344)
Q Consensus 109 ~~~~~~~-i~~a~~ag~~~l~~tvd~~~~g~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 186 (344)
+.....+ ++...........+....+.-. ........ .+......+.. .....++.... .+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----------~~~~~~~a~~~-~~~~~~~~~~~-~~~~~~ 146 (310)
T d1vcfa1 81 PEALRSFRVRKVAPKALLIANLGLAQLRRY-GRDDLLRL-----------VEMLEADALAF-HVNPLQEAVQR-GDTDFR 146 (310)
T ss_dssp TTTHHHHCCTTTCSSSCEEEEEEGGGGGTC-CHHHHHHH-----------HHHHTCSEEEE-ECCHHHHHHTT-SCCCCT
T ss_pred hhhhcccchHHhcCCcceeeeecccchhhh-hHHHHHHH-----------HHhcCCCeecc-ccccchhhhcc-cccccc
Confidence 1111111 1000000111111111111000 00000000 00000011110 11122333332 33333
Q ss_pred cHHHHHHHHHhcCCcEEEEee---cCHHHHHHHHHcCCcEEEEccCCCCCC------------------CCchhhHHHHH
Q 019244 187 SWKDVKWLQTITKLPILVKGV---LTAEDARIAVQAGAAGIIVSNHGARQL------------------DYVPATIMALE 245 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v---~~~~~a~~~~~~G~d~I~v~~~gG~~~------------------~~g~~~~~~l~ 245 (344)
.|.+..+....++.|+++|++ .++++++.+.++|+|+|+|+||||++. +.|.+++++|.
T Consensus 147 ~~~~~~~~~~~~~~p~~~k~v~~~~~~e~a~~~~~aGvd~i~vsn~gg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~al~ 226 (310)
T d1vcfa1 147 GLVERLAELLPLPFPVMVKEVGHGLSREAALALRDLPLAAVDVAGAGGTSWARVEEWVRFGEVRHPELCEIGIPTARAIL 226 (310)
T ss_dssp THHHHHHHHCSCSSCEEEECSSSCCCHHHHHHHTTSCCSEEECCCBTSCCHHHHHHTC--------CCTTCSCBHHHHHH
T ss_pred cHHHHHHHHhhccCCceeeeecCcccHHHHHHHHHcCCCEEEeccccccchhhcccccccCchhhhhhhhcchHHHHHHH
Confidence 566677777778999999998 689999999999999999999999642 34678889999
Q ss_pred HHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHhhhc
Q 019244 246 EVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEIT 325 (344)
Q Consensus 246 ~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~~~i~~l~ 325 (344)
++++.. .++|||+|||||+|.||+|||+||||+|++|||++|++. .|.++|.++++.|++||+.+|.++|++|++||+
T Consensus 227 ~~~~~~-~~i~Ii~dGGIr~g~Dv~KALalGAdaV~iGr~~l~~~~-~G~~gv~~~l~~l~~El~~~m~~~G~~~i~el~ 304 (310)
T d1vcfa1 227 EVREVL-PHLPLVASGGVYTGTDGAKALALGADLLAVARPLLRPAL-EGAERVAAWIGDYLEELRTALFAIGARNPKEAR 304 (310)
T ss_dssp HHHHHC-SSSCEEEESSCCSHHHHHHHHHHTCSEEEECGGGHHHHT-TCHHHHHHHHHHHHHHHHHHHHHHTCSSGGGGT
T ss_pred HHHhhc-CCCeEEeCCCCCchHHHHHHHHhCCCEeeEhHHHHHHhc-cCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHh
Confidence 887765 589999999999999999999999999999999999854 689999999999999999999999999999998
Q ss_pred cc
Q 019244 326 RD 327 (344)
Q Consensus 326 ~~ 327 (344)
+.
T Consensus 305 g~ 306 (310)
T d1vcfa1 305 GR 306 (310)
T ss_dssp TC
T ss_pred hh
Confidence 54
|
| >d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]
Probab=99.92 E-value=1.2e-24 Score=209.52 Aligned_cols=277 Identities=19% Similarity=0.255 Sum_probs=178.6
Q ss_pred cccccceeeccc-CCCCCCCcceee-cccccccceeecccccccccCChhhHHHHHHHHHcCCcc-ccC--CHHHHHHHH
Q 019244 42 AFSRILFRPRIL-IDVSKIDMNTTV-LGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM-VYK--DRNVVAQLV 116 (344)
Q Consensus 42 ~f~~i~l~pr~l-~~~~~vd~st~l-~g~~l~~Pi~iapm~~~~~~~~~~~~~lA~aA~~~g~~~-~~~--d~~~~~~~i 116 (344)
.||+|.|+|..- .+.++|||+++| .+.++..||+-|||.. -.+..+|.+-++.|... +++ +.+...+.+
T Consensus 9 tfDDVlLvP~~st~~~~~vdl~~~~t~~~~l~iPIisA~MDt------Vt~~~mAi~ma~~GGlgVihr~~~ie~q~~~v 82 (388)
T d1eepa_ 9 TFDDVSLIPRKSSVLPSEVSLKTQLTKNISLNIPFLSSAMDT------VTESQMAIAIAKEGGIGIIHKNMSIEAQRKEI 82 (388)
T ss_dssp CGGGEEECCCCCCSCGGGCCCCEESSSSCEESSSEEECCCTT------TCSHHHHHHHHHHTSEEEECSSSCHHHHHHHH
T ss_pred CcccEEEeCCCCCCCHHHceeeEEeeCCEecCCCEEecCCCC------CCCHHHHHHHHHCCCEEEEeCCCCHHHHHHHH
Confidence 599999999643 244689999999 4689999999999953 13557999999998877 343 566666667
Q ss_pred HHHHHcCCcEEEec-cCCc-----ccccc--------HHHH--Hhh--cCCC---Cccc-ccccccccccccccccchhh
Q 019244 117 RRAERAGFKAIALT-VDTP-----RLGRR--------EADI--KNR--FTLP---PFLT-LKNFQGLDLGKMDEANDSGL 174 (344)
Q Consensus 117 ~~a~~ag~~~l~~t-vd~~-----~~g~r--------~~~~--~~~--~~~~---~g~~-~~~~~~~~~~~~~~~~~~~~ 174 (344)
++++...+.....+ -|.. .+..+ ..+. +.. .... ..+. ...+. ...+... ....+
T Consensus 83 ~~Vk~~~~~~~~~~~~d~~~~~~~~~t~~~~~~~~~a~~d~~~~~~~p~~~~d~~~~l~vgaAvg-~~~~~~~--ra~~L 159 (388)
T d1eepa_ 83 EKVKTYKFQKTINTNGDTNEQKPEIFTAKQHLEKSDAYKNAEHKEDFPNACKDLNNKLRVGAAVS-IDIDTIE--RVEEL 159 (388)
T ss_dssp HHHHTCC--------------------------------------CCTTCCBCTTSCBCCEEEEC-SCTTHHH--HHHHH
T ss_pred HHhhhccccccccccCccccccchhhhhhhhhhhhHHHHhHHHHhhhhHHHhhhhccchhhhccC-CCHHHHH--HHHHH
Confidence 77766554322111 0000 00000 0000 000 0000 0000 00000 0000000 00000
Q ss_pred H----HH--Hh-hcCCCCCcHHHHHHHHHhc-CCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCC------CCCchhh
Q 019244 175 A----AY--VA-GQIDRSLSWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ------LDYVPAT 240 (344)
Q Consensus 175 ~----~~--~~-~~~~~~~~~~~i~~i~~~~-~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~------~~~g~~~ 240 (344)
. .+ +. ..++.....+.++++++.+ ++|||+..+.|.+.++.++++|||+|.|...+|.. ...|.|+
T Consensus 160 ~~aG~D~ivID~AhG~s~~~~~~i~~ik~~~~~v~vIaGNV~T~e~a~~L~~~GaD~VkVGiGpGs~CtTr~~~GvG~pq 239 (388)
T d1eepa_ 160 VKAHVDILVIDSAHGHSTRIIELIKKIKTKYPNLDLIAGNIVTKEAALDLISVGADCLKVGIGPGSICTTRIVAGVGVPQ 239 (388)
T ss_dssp HHTTCSEEEECCSCCSSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHTTTCSEEEECSSCSTTSHHHHHHCCCCCH
T ss_pred HhhccceeeeeccccchHHHHHHHHHHHHHCCCCceeeccccCHHHHHHHHhcCCCeeeeccccccccccccccccCcch
Confidence 0 00 00 1122223456799999887 69999999999999999999999999998766642 3457899
Q ss_pred HHHHHHHHHHccC-CCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHH--------------------HHhhh-------
Q 019244 241 IMALEEVVKATQG-RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV--------------------YSLAA------- 292 (344)
Q Consensus 241 ~~~l~~i~~~~~~-~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l--------------------~~~~~------- 292 (344)
+.++.++.+...+ .+|||+||||+++.|++|||++|||+||+|++|- |+++.
T Consensus 240 ~sai~~~~~~~~~~~vpiIADGGi~~~Gdi~KAla~GAd~VMlG~~lAg~~Espg~~~~~~g~~~k~~~gm~S~~a~~~g 319 (388)
T d1eepa_ 240 ITAICDVYEACNNTNICIIADGGIRFSGDVVKAIAAGADSVMIGNLFAGTKESPSEEIIYNGKKFKSYVGMGSISAMKRG 319 (388)
T ss_dssp HHHHHHHHHHHTTSSCEEEEESCCCSHHHHHHHHHHTCSEEEECHHHHTBTTSSSCEEEETTEEEEC-------------
T ss_pred HHHHHHHHHHhccCCceEEeccccCcCCceeeeEEeccceeecchhhhcccCCCceEEEeCCcEeecccccccHHHHhcc
Confidence 9999999887654 7999999999999999999999999999999982 22221
Q ss_pred ------------------cChH-------HHHHHHHHHHHHHHHHHHHhCCCCHhhhccc
Q 019244 293 ------------------EGEK-------GVRRVLEMLREEFELAMALSGCRSLKEITRD 327 (344)
Q Consensus 293 ------------------~G~~-------~v~~~l~~l~~el~~~m~~~G~~~i~~l~~~ 327 (344)
+|.+ .+.+.+.+|...|+..|.++|+++++||++.
T Consensus 320 ~~~~~~~~~~~~~~~~~~EG~~~~v~~~G~~~~~~~~l~gglrs~m~y~Ga~~l~e~~~~ 379 (388)
T d1eepa_ 320 SKSRYFQLENNEPKKLVPEGIEGMVPYSGKLKDILTQLKGGLMSGMGYLGAATISDLKIN 379 (388)
T ss_dssp -----------------------CEECCBCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHS
T ss_pred ccccccccccccccccccCceEEEeCCCCCHHHHHHHHHHHHHHHhhccCcccHHHHhhC
Confidence 1111 2778899999999999999999999999854
|
| >d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.90 E-value=3.1e-23 Score=197.51 Aligned_cols=256 Identities=17% Similarity=0.231 Sum_probs=174.9
Q ss_pred cccccceeeccc-CCCCCCCcceeec-ccccccceeecccccccccCChhhHHHHHHHHHcCCccc-c--CCHHHHHHHH
Q 019244 42 AFSRILFRPRIL-IDVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMV-Y--KDRNVVAQLV 116 (344)
Q Consensus 42 ~f~~i~l~pr~l-~~~~~vd~st~l~-g~~l~~Pi~iapm~~~~~~~~~~~~~lA~aA~~~g~~~~-~--~d~~~~~~~i 116 (344)
.||+|.|+|..- .+.++||+++.|- ...+..||+-|||.. . .+..+|.+.+++|...+ + .+.+...+.+
T Consensus 13 ~fdDVllvP~~st~~s~~vdl~~~it~~~~~~iPIIsA~MDt--V----~~~~mA~~ls~~Gglgvlhr~~~~~e~~~~~ 86 (365)
T d1zfja1 13 TFDDVLLIPAESHVLPNEVDLKTKLADNLTLNIPIITAAMDT--V----TGSKMAIAIARAGGLGVIHKNMSITEQAEEV 86 (365)
T ss_dssp CGGGEEECCCCCCSCGGGCCCCEEEETTEEESSSEEECCCTT--T----CSHHHHHHHHHTTCEEEECCSSCHHHHHHHH
T ss_pred CcceEEEeCCCCCcCHhHceeeEEeeCCcccCCCEEECCCCC--c----CCHHHHHHHHHCCCceEEcCccCHHHHHHHh
Confidence 699999999643 3446899999995 579999999999952 2 34569999999998773 3 3444444444
Q ss_pred HHHHHcC-CcEEEeccCCcccc-ccHHHHHhhcCCCCcccccccccccccccccccchhhHHHHhhcCCCCCcHHHHHHH
Q 019244 117 RRAERAG-FKAIALTVDTPRLG-RREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWL 194 (344)
Q Consensus 117 ~~a~~ag-~~~l~~tvd~~~~g-~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i 194 (344)
+..++.- ...+...+.++.-. .|-..+.+. .+ +.+..... .++.....+.++++
T Consensus 87 ~~~~~~~~~~~v~aavGv~~~~~er~~~l~~a----------gv-----d~ivID~A---------~G~s~~~~~~i~~i 142 (365)
T d1zfja1 87 RKVKRSEGRLLVAAAVGVTSDTFERAEALFEA----------GA-----DAIVIDTA---------HGHSAGVLRKIAEI 142 (365)
T ss_dssp HHHHHHTSCBCCEEEECSSTTHHHHHHHHHHH----------TC-----SEEEECCS---------CTTCHHHHHHHHHH
T ss_pred hhhhhccCceEEEEEeccCchHHHHHHHHHHc----------CC-----CEEEEECC---------cccccchhHHHHHH
Confidence 4444322 11112222211100 000000000 00 00000001 12222234578899
Q ss_pred HHhc-CCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCC------CCCchhhHHHHHHHHHHcc-CCCcEEEecCCCCH
Q 019244 195 QTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ------LDYVPATIMALEEVVKATQ-GRIPVFLDGGVRRG 266 (344)
Q Consensus 195 ~~~~-~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~------~~~g~~~~~~l~~i~~~~~-~~~~via~GGIr~g 266 (344)
++.. ++||++..+.|++.++.+.++|||+|.|...+|.. .-.|.|++.++.+++++.. ..+|||+||||+++
T Consensus 143 k~~~~~~~iIaGNV~T~e~a~~L~~aGaD~VkVGiG~Gs~CTTr~~tGvGvPq~sai~~~~~~~~~~~~~iIADGGi~~~ 222 (365)
T d1zfja1 143 RAHFPNRTLIAGNIATAEGARALYDAGVDVVKVGIGPGSICTTRVVAGVGVPQVTAIYDAAAVAREYGKTIIADGGIKYS 222 (365)
T ss_dssp HHHCSSSCEEEEEECSHHHHHHHHHTTCSEEEECSSCCTTBCHHHHTCCCCCHHHHHHHHHHHHHHTTCEEEEESCCCSH
T ss_pred HhhCCCcceeecccccHHHHHHHHhcCCceEEeeecccccccCcceeeeeccchhHHHHHHHHHHhCCceEEecCCcCcc
Confidence 8887 68999999999999999999999999998666642 3357789999988876553 36999999999999
Q ss_pred HHHHHHHHcCCCEEEEchHHH--------------------HHhhh-------------------------cCh------
Q 019244 267 TDVFKALALGASGIFIGRPVV--------------------YSLAA-------------------------EGE------ 295 (344)
Q Consensus 267 ~dv~kalalGAd~V~ig~~~l--------------------~~~~~-------------------------~G~------ 295 (344)
.|++|||++|||+||+|++|- ++++. +|.
T Consensus 223 GDi~KAla~GAd~VMlG~~lAg~~EsPG~~~~~~g~~~k~~~Gm~s~~a~~~~~~~r~~~~~~~~~~~~~~eG~~~~v~~ 302 (365)
T d1zfja1 223 GDIVKALAAGGNAVMLGSMFAGTDEAPGETEIYQGRKYKTYRGMGSIAAMKKGSSDRYFQGSVNEANKLVPEGIEGRVAY 302 (365)
T ss_dssp HHHHHHHHTTCSEEEESTTTTTBSSCCCCEEEETTEEEEEEECTTSHHHHCC--------------CCCCCSBCEEEEEC
T ss_pred hhhhhhhhccCCEEEecchhccccCCCCcEEEECCeEeeecCCcccHhhhhcccccccccccccccccccccCceEEecc
Confidence 999999999999999999882 11110 010
Q ss_pred -HHHHHHHHHHHHHHHHHHHHhCCCCHhhhccc
Q 019244 296 -KGVRRVLEMLREEFELAMALSGCRSLKEITRD 327 (344)
Q Consensus 296 -~~v~~~l~~l~~el~~~m~~~G~~~i~~l~~~ 327 (344)
-.+.+.+.+|...|+..|.++|+++|+||++.
T Consensus 303 ~G~~~~~~~~l~gglrs~m~y~G~~~l~e~~~~ 335 (365)
T d1zfja1 303 KGAASDIVFQMLGGIRSGMGYVGAGDIQELHEN 335 (365)
T ss_dssp CBCHHHHHHHHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhhcCCCcHHHHhhC
Confidence 02678999999999999999999999999865
|
| >d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.90 E-value=3.3e-23 Score=198.42 Aligned_cols=262 Identities=18% Similarity=0.247 Sum_probs=175.4
Q ss_pred cccccceeeccc-CCCCCCCcceee-cccccccceeecccccccccCChhhHHHHHHHHHcCCccc---cCCHHHHHHHH
Q 019244 42 AFSRILFRPRIL-IDVSKIDMNTTV-LGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMV---YKDRNVVAQLV 116 (344)
Q Consensus 42 ~f~~i~l~pr~l-~~~~~vd~st~l-~g~~l~~Pi~iapm~~~~~~~~~~~~~lA~aA~~~g~~~~---~~d~~~~~~~i 116 (344)
.||||.|+|..- .+..+||++|+| ....+..||+-|||.. . .+..+|.+-+++|...+ +.+++...+.+
T Consensus 15 tfdDVllvP~~st~~sr~V~l~t~lt~~~~l~iPIIsApMdt--V----t~~~mA~als~~GGLGvLhr~~~~e~~~~ev 88 (378)
T d1jr1a1 15 TYNDFLILPGYIDFTADQVDLTSALTKKITLKTPLVSSPMDT--V----TEAGMAIAMALTGGIGFIHHNCTPEFQANEV 88 (378)
T ss_dssp CGGGEEECCCCCCSCGGGCBCCEESSSSCEESSCEEECCCTT--T----CSHHHHHHHHHHTCEEEECCSSCHHHHHHHH
T ss_pred CcccEEEeCCCCCCcHHHceeeeEEECCccCCCCEEECCCCC--c----CCHHHHHHHHHCCCeeEEcCCCCHHHHHHHH
Confidence 499999999853 244589999999 5578999999999953 2 34469999999998773 34666666666
Q ss_pred HHHHHcCCcEEEeccCCccccccHHHHHhhcCCCCcccccccccccccccccc--cchhhHHHHh---hcCCCCCcHHHH
Q 019244 117 RRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEA--NDSGLAAYVA---GQIDRSLSWKDV 191 (344)
Q Consensus 117 ~~a~~ag~~~l~~tvd~~~~g~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~---~~~~~~~~~~~i 191 (344)
+++++.... |..... .... +..+. .+.. ..+..... .......++. ..++.....+.+
T Consensus 89 ~~v~~~~~~--------p~~~~~---~~~~--l~v~a---avg~-~~~~~~~~~~l~~agv~vi~id~a~g~~~~~~~~i 151 (378)
T d1jr1a1 89 RKVKKYEQY--------PLASKD---AKKQ--LLCGA---AIGT-HEDDKYRLDLLALAGVDVVVLDSSQGNSIFQINMI 151 (378)
T ss_dssp HHHHTSCCC--------TTCCBC---TTSC--BCCEE---EECS-STHHHHHHHHHHHHTCCEEEECCSSCCSHHHHHHH
T ss_pred heehhhhhC--------cccccc---cccC--EEEEE---Eecc-CHHHHHHHHHHHhhccceEeeeccCccchhhHHHH
Confidence 666543211 111000 0000 00000 0000 00000000 0000000000 011122234578
Q ss_pred HHHHHhc-CCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCC------CCchhhHHHHHHHHHHccC-CCcEEEecCC
Q 019244 192 KWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQL------DYVPATIMALEEVVKATQG-RIPVFLDGGV 263 (344)
Q Consensus 192 ~~i~~~~-~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~------~~g~~~~~~l~~i~~~~~~-~~~via~GGI 263 (344)
+++++.. ++|+++..+.|++.++.+.++|||+|.|...+|... ..|.|++.++.++.+.... ++|||+||||
T Consensus 152 ~~ik~~~~~~~iIaGnVaT~e~a~~L~~aGAD~VkVGiG~Gs~ctTr~~tGvG~pq~sai~~~~~~a~~~~vpIIADGGi 231 (378)
T d1jr1a1 152 KYMKEKYPNLQVIGGNVVTAAQAKNLIDAGVDALRVGMGCGSICITQEVLACGRPQATAVYKVSEYARRFGVPVIADGGI 231 (378)
T ss_dssp HHHHHHSTTCEEEEEEECSHHHHHHHHHHTCSEEEECSSCSTTBCHHHHHCCCCCHHHHHHHHHHHHGGGTCCEEEESCC
T ss_pred HHHHHHCCCCceeecccccHHHHHHHHHhCCCEEeeccccccccccccccccCcccchhhhHHHHhhcccCCceeccccc
Confidence 8898887 799999999999999999999999999987655421 2367888888888776543 7999999999
Q ss_pred CCHHHHHHHHHcCCCEEEEchHHH--------------------HHhhh------------------------cCh----
Q 019244 264 RRGTDVFKALALGASGIFIGRPVV--------------------YSLAA------------------------EGE---- 295 (344)
Q Consensus 264 r~g~dv~kalalGAd~V~ig~~~l--------------------~~~~~------------------------~G~---- 295 (344)
+++.|++|||++|||+||||++|. |+++. +|.
T Consensus 232 ~~~gdiakAla~GAd~VMmGs~fAgt~EspG~~~~~~g~~~k~~~gm~S~~a~~~~~~~~~~~~~~~~~~~~~eG~~~~v 311 (378)
T d1jr1a1 232 QNVGHIAKALALGASTVMMGSLLAATTEAPGEYFFSDGIRLKKYRGMGSLDAMDKHLSSQNRYFSEADKIKVAQGVSGAV 311 (378)
T ss_dssp CSHHHHHHHHHTTCSEEEESTTTTTBTTSSSCCEESSSCEEEEEECTTSTTTC----------------CCCCCBCEEEE
T ss_pred ccCCceeeEEEeecceeeecceeeeeecccCccceecCceeeeccccchhhhhhcccchhhhhccccccccCCCccEEee
Confidence 999999999999999999999883 22221 111
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHhCCCCHhhhcc
Q 019244 296 ---KGVRRVLEMLREEFELAMALSGCRSLKEITR 326 (344)
Q Consensus 296 ---~~v~~~l~~l~~el~~~m~~~G~~~i~~l~~ 326 (344)
-.+.+++.+|...|+..|.++|+++|.||++
T Consensus 312 ~~~G~v~~~~~~l~gglrs~m~y~G~~~l~e~~~ 345 (378)
T d1jr1a1 312 QDKGSIHKFVPYLIAGIQHSCQDIGAKSLTQVRA 345 (378)
T ss_dssp ECCBCHHHHHHHHHHHHHHHHHHTTCSBHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHhhhccCcCcHHHHHh
Confidence 1278999999999999999999999999975
|
| >d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Thermotoga maritima [TaxId: 2336]
Probab=99.90 E-value=2.3e-22 Score=189.42 Aligned_cols=256 Identities=20% Similarity=0.290 Sum_probs=175.0
Q ss_pred cccccceeecccC-CCCCCCcceeec-ccccccceeecccccccccCChhhHHHHHHHHHcCCcc-c--cCCHHHHHHHH
Q 019244 42 AFSRILFRPRILI-DVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM-V--YKDRNVVAQLV 116 (344)
Q Consensus 42 ~f~~i~l~pr~l~-~~~~vd~st~l~-g~~l~~Pi~iapm~~~~~~~~~~~~~lA~aA~~~g~~~-~--~~d~~~~~~~i 116 (344)
.|||+.|+|.... +..++|++|+|- ...+.+||+-|||.. . .+..+|.+.+++|... + ..+++...+.+
T Consensus 6 tfdDVllvP~~s~~~sr~vdl~t~lt~~l~~~iPIIaa~Mdt--V----~~~~mA~als~~GGlGvi~r~~~~e~~~~~i 79 (330)
T d1vrda1 6 TFDDVLLVPQYSEVLPKDVKIDTRLTRQIRINIPLVSAAMDT--V----TEAALAKALAREGGIGIIHKNLTPDEQARQV 79 (330)
T ss_dssp CGGGEEECCCCCCCCGGGSCCCEESSSSCEESSSEEECCCTT--T----CSHHHHHHHHTTTCEEEECSSSCHHHHHHHH
T ss_pred ccccEEEeCCCCCcccccceEEEEEecCcccCCCEEeCCCCC--c----CCHHHHHHHHHCCCeEEeecccchhhhHHHH
Confidence 5999999998642 334799999985 468889999999964 2 3456999999998876 3 33566666666
Q ss_pred HHHHHcCCc-EEEeccCCccccccHHHHHhhcCCCCcccccccccccccccccccchhhHHHHhhcCCCCCcHHHHHHHH
Q 019244 117 RRAERAGFK-AIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQ 195 (344)
Q Consensus 117 ~~a~~ag~~-~l~~tvd~~~~g~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~ 195 (344)
+..++.... ...+.++.... .+-..+.+ .+ + +.+..... .++.....+.+++++
T Consensus 80 ~~vk~~~~~v~~~vgv~~~~~-e~~~~li~-----ag-----v-----d~ivId~A---------~G~~~~~~~~ik~ik 134 (330)
T d1vrda1 80 SIVKKTRLLVGAAVGTSPETM-ERVEKLVK-----AG-----V-----DVIVIDTA---------HGHSRRVIETLEMIK 134 (330)
T ss_dssp HHHHTCCBCCEEEECSSTTHH-HHHHHHHH-----TT-----C-----SEEEECCS---------CCSSHHHHHHHHHHH
T ss_pred HHHhhhccEEEEEEecCHHHH-HHHHHHHH-----CC-----C-----CEEEEecC---------CCCchhHHHHHHHHH
Confidence 666654421 11222211100 00000000 00 0 00000000 122222345688888
Q ss_pred Hhc-CCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCC------CCCchhhHHHHHHHHHHccC-CCcEEEecCCCCHH
Q 019244 196 TIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ------LDYVPATIMALEEVVKATQG-RIPVFLDGGVRRGT 267 (344)
Q Consensus 196 ~~~-~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~------~~~g~~~~~~l~~i~~~~~~-~~~via~GGIr~g~ 267 (344)
+.. ++||++..+.+.+.++.+.++|||+|.|...+|.. .-.|.|++.++.++.+.... ++|||++|||+++.
T Consensus 135 ~~~~~~~viaGnV~t~~~a~~l~~~GaD~v~VGig~Gs~ctt~~~~G~g~p~~sai~~~~~~~~~~~vpvIAdGGi~~~g 214 (330)
T d1vrda1 135 ADYPDLPVVAGNVATPEGTEALIKAGADAVKVGVGPGSICTTRVVAGVGVPQLTAVMECSEVARKYDVPIIADGGIRYSG 214 (330)
T ss_dssp HHCTTSCEEEEEECSHHHHHHHHHTTCSEEEECSSCSTTCHHHHHHCCCCCHHHHHHHHHHHHHTTTCCEEEESCCCSHH
T ss_pred HhCCCCCEEeechhHHHHHHHHHHcCCCEEeeccccCccccccceeccccccchhHHHHHHHHHhcCceEEecCCcccCC
Confidence 877 69999999999999999999999999996554532 12456788877777665433 79999999999999
Q ss_pred HHHHHHHcCCCEEEEchHHHHHhhhc-------------------------------C--------hH----------HH
Q 019244 268 DVFKALALGASGIFIGRPVVYSLAAE-------------------------------G--------EK----------GV 298 (344)
Q Consensus 268 dv~kalalGAd~V~ig~~~l~~~~~~-------------------------------G--------~~----------~v 298 (344)
|++|||++|||+||+|+.|.-.-.+. + ++ .+
T Consensus 215 diakAla~GAd~Vm~Gs~fa~~~E~pg~~~~~~g~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~~~eG~~~~v~~~g~~ 294 (330)
T d1vrda1 215 DIVKALAAGAESVMVGSIFAGTEEAPGETILYQGRKYKAYRGMGSLGAMRSGSADRYGQEGENKFVPEGIEGMVPYKGTV 294 (330)
T ss_dssp HHHHHHHTTCSEEEESHHHHTBTTSSSEEEEETTEEEEECBCCC-------------------------CBCCEECCBCH
T ss_pred chheeeeccCceeeecchheeecccCccEEEECCceeeeccccccccccccCchhhccccccccccCCCcEEecCCCCCH
Confidence 99999999999999999984211000 0 12 27
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCHhhhcccc
Q 019244 299 RRVLEMLREEFELAMALSGCRSLKEITRDH 328 (344)
Q Consensus 299 ~~~l~~l~~el~~~m~~~G~~~i~~l~~~~ 328 (344)
.+.+++|...|++.|.++|+++|+||++.-
T Consensus 295 ~~~~~~l~gglrs~~~y~G~~~l~~~~~~~ 324 (330)
T d1vrda1 295 KDVVHQLVGGLRSGMGYIGARTIKELQEKA 324 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhhcCcchHHHHhcCC
Confidence 889999999999999999999999998754
|
| >d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId: 5724]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Tritrichomonas foetus [TaxId: 5724]
Probab=99.90 E-value=7.4e-23 Score=195.26 Aligned_cols=255 Identities=18% Similarity=0.207 Sum_probs=176.1
Q ss_pred cccccceeeccc--CC-CCCCCcceeec--------ccccccceeecccccccccCChhhHHHHHHHHHcCCcc-cc--C
Q 019244 42 AFSRILFRPRIL--ID-VSKIDMNTTVL--------GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM-VY--K 107 (344)
Q Consensus 42 ~f~~i~l~pr~l--~~-~~~vd~st~l~--------g~~l~~Pi~iapm~~~~~~~~~~~~~lA~aA~~~g~~~-~~--~ 107 (344)
.|||+.|+|... .. .++|||+++|. +..+..||+-|||.. -.+..+|.+-++.|... ++ .
T Consensus 10 tFdDVlLvP~~Sti~s~r~dVdl~~~l~~~~~~~~~~i~l~iPIIsAnMDT------Vt~~~mA~~la~~GglgvihR~~ 83 (362)
T d1pvna1 10 TFNEYLLIPGLSTVDCIPSNVNLSTPLVKFQKGQQSEINLKIPLVSAIMQS------VSGEKMAIALAREGGISFIFGSQ 83 (362)
T ss_dssp CGGGEEECCCCBCTTCCGGGCBCCEECSCEETTSCCSCEESSSEEECSCTT------TCSHHHHHHHHHTTCEEEECCSS
T ss_pred CccceEEeCCCCcCCCCccceeeeeEEEeeccccccccccCCcEEecCCCC------cCCHHHHHHHHHCCCEEEEeecC
Confidence 599999999864 33 68999999983 456899999999952 14567999999998776 33 3
Q ss_pred CHHHHHHHHHHHHHcCCcEEEeccCCccccccHHHHHhhcCCCCcccccccccccccccccccchhhHHHHhhcCCCCCc
Q 019244 108 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS 187 (344)
Q Consensus 108 d~~~~~~~i~~a~~ag~~~l~~tvd~~~~g~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (344)
+.+.....+...+...+............ .+-..+... . .+.+.....+ ++....
T Consensus 84 ~ie~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~~a----------g-----~d~i~IDvAh---------G~~~~v 138 (362)
T d1pvna1 84 SIESQAAMVHAVKNFRYLVGAGINTRDFR-ERVPALVEA----------G-----ADVLCIDSSD---------GFSEWQ 138 (362)
T ss_dssp CHHHHHHHHHHHHTCCCCCEEEECSSSHH-HHHHHHHHH----------T-----CSEEEECCSC---------CCBHHH
T ss_pred CHHHHHHHhhhhhhcccccccccchhhhH-HHHHHHhhc----------C-----ceEEeechhc---------cchhHH
Confidence 56655555555554433321111110000 000000000 0 0000001111 111112
Q ss_pred HHHHHHHHHhc--CCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCC------CCCchhhHHHHHHHHHHcc-------
Q 019244 188 WKDVKWLQTIT--KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ------LDYVPATIMALEEVVKATQ------- 252 (344)
Q Consensus 188 ~~~i~~i~~~~--~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~------~~~g~~~~~~l~~i~~~~~------- 252 (344)
.+.++++++.. ++||+++.+.|++.++.+.++|+|+|.|.-.+|.. ...|.|+++++.+++++..
T Consensus 139 ~~~i~~ir~~~~~~~~IiAGNVaT~e~~~~L~~aGaD~vkVGIG~Gs~CTTr~~tGvG~Pq~sAv~e~a~~~~~~~~~~~ 218 (362)
T d1pvna1 139 KITIGWIREKYGDKVKVGAGNIVDGEGFRYLADAGADFIKIGIGGGSICITREQKGIGRGQATAVIDVVAERNKYFEETG 218 (362)
T ss_dssp HHHHHHHHHHHGGGSCEEEEEECSHHHHHHHHHHTCSEEEECSSCSTTBCHHHHTCBCCCHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhhccceeeecccccCHHHHHHHHHhCCcEEEecccccccccchhhhccCCchHHHHHHHHHHHHHhhhhcc
Confidence 35688887655 48999999999999999999999999998766642 3357899999998876532
Q ss_pred CCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHH--------------------HHHhhh--------------------
Q 019244 253 GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV--------------------VYSLAA-------------------- 292 (344)
Q Consensus 253 ~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~--------------------l~~~~~-------------------- 292 (344)
..+|||+||||+++.|++|||++|||+||+|+.| +|+++.
T Consensus 219 ~~v~iiaDGGi~~~gdi~KAla~GAd~VM~G~~lAg~~Espg~~~~~~g~~~k~~~Gm~S~~a~~~~~~~~~~~~~~~~~ 298 (362)
T d1pvna1 219 IYIPVCSDGGIVYDYHMTLALAMGADFIMLGRYFARFEESPTRKVTINGSVMKEYWGEGSSRARNWQRYDLGGKQKLSFE 298 (362)
T ss_dssp EECCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTBTTSSSCEEEETTEEEEEEECTTSTTTCCGGGGCSSSCSSCSSC
T ss_pred cCCceeeccccCcccceeEEEEEeccceeehhhhhcccccCCcceeeccceeeeeeccccccccccccccccccccccCC
Confidence 2599999999999999999999999999999988 233321
Q ss_pred cCh-------HHHHHHHHHHHHHHHHHHHHhCCCCHhhhccc
Q 019244 293 EGE-------KGVRRVLEMLREEFELAMALSGCRSLKEITRD 327 (344)
Q Consensus 293 ~G~-------~~v~~~l~~l~~el~~~m~~~G~~~i~~l~~~ 327 (344)
+|. -.+++++.+|...|+..|.++|+++|.||++.
T Consensus 299 eG~~~~v~~~g~~~~~~~~l~gglrs~~~y~G~~~l~~~~~~ 340 (362)
T d1pvna1 299 EGVDSYVPYAGKLKDNVEASLNKVKSTMCNCGALTIPQLQSK 340 (362)
T ss_dssp CBCEEEEECCBCHHHHHHHHHHHHHHHHHHTTCSBHHHHHHH
T ss_pred CCcEEEeccCCCHHHHHHHHHHHHHHHHhhcCcCcHHHHHhC
Confidence 111 13889999999999999999999999999853
|
| >d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase, central and FMN domains {Azospirillum brasilense [TaxId: 192]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Alpha subunit of glutamate synthase, central and FMN domains species: Azospirillum brasilense [TaxId: 192]
Probab=99.86 E-value=2.3e-21 Score=196.99 Aligned_cols=256 Identities=21% Similarity=0.199 Sum_probs=184.4
Q ss_pred ccccceeecccccccccCChhhHHHHHHHHHcCCcc----ccCCHHHHHHHHHHHHHcC--CcEEEeccCCccccccHHH
Q 019244 69 KISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM----VYKDRNVVAQLVRRAERAG--FKAIALTVDTPRLGRREAD 142 (344)
Q Consensus 69 ~l~~Pi~iapm~~~~~~~~~~~~~lA~aA~~~g~~~----~~~d~~~~~~~i~~a~~ag--~~~l~~tvd~~~~g~r~~~ 142 (344)
.+-.||.+++|++|.++ +++..+||++|++.|+.. -..+++.... ...+ .......+-...+|+....
T Consensus 426 ~I~k~f~isaMSfGALS-~~A~~aLa~ga~~~g~~~ntGEGG~~~~~~~~-----~~~~~~~~~~i~q~asgrfG~~~~~ 499 (771)
T d1ea0a2 426 AIRKRFITPGMSMGALS-PEAHGTLNVAMNRIGAKSDSGEGGEDPARFRP-----DKNGDNWNSAIKQVASGRFGVTAEY 499 (771)
T ss_dssp HHHTTEEEEECCBTTBC-HHHHHHHHHHHHHTTCEEECCTTCCCGGGSSB-----CTTSCBCCCSEEEECSSCTTCCHHH
T ss_pred hhheeeccccccccccC-HHHHHHHHHHHHhcCCeeecCCCCCChhhccc-----cCCCcccccccceecCCcCCcCHHH
Confidence 45679999999999987 568999999999999987 1223322100 0000 0112344556667776554
Q ss_pred HHhh----cCCCCccccccccccccccccc-----ccchhhHHHHhhcCCCCC-cHH----HHHHHHHhc-CCcEEEEee
Q 019244 143 IKNR----FTLPPFLTLKNFQGLDLGKMDE-----ANDSGLAAYVAGQIDRSL-SWK----DVKWLQTIT-KLPILVKGV 207 (344)
Q Consensus 143 ~~~~----~~~~~g~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~----~i~~i~~~~-~~PvivK~v 207 (344)
+... ..+.+|..+...+.++...+.. +...+...+++|.+++++ +.+ .|+++|+.. +.||.||.+
T Consensus 500 l~~~~~ieIK~~QGAKpG~GG~Lpg~KVt~~IA~~R~~~~G~~~iSP~~h~di~siedL~~~I~~Lr~~~~~~pv~vKl~ 579 (771)
T d1ea0a2 500 LNQCRELEIKVAQGAKPGEGGQLPGFKVTEMIARLRHSTPGVMLISPPPHHDIYSIEDLAQLIYDLKQINPDAKVTVKLV 579 (771)
T ss_dssp HTSCSEEEEECCCTTSTTTCCEECGGGCCHHHHHHHTCCTTCCEECCSSCTTCSSHHHHHHHHHHHHHHCTTCEEEEEEE
T ss_pred hcccceeEEeeecccccccccccccccCCHHHHHhcCCCCCCCccCCCCCCCCCCHHHHHHHHHHHHhcCCCCCEEEEEC
Confidence 4432 2245555555555555443321 122233456677667766 443 488888877 799999998
Q ss_pred cC--H-HHHHHHHHcCCcEEEEccC-CCCC-------CCCchhhHHHHHHHHHHc-----cCCCcEEEecCCCCHHHHHH
Q 019244 208 LT--A-EDARIAVQAGAAGIIVSNH-GARQ-------LDYVPATIMALEEVVKAT-----QGRIPVFLDGGVRRGTDVFK 271 (344)
Q Consensus 208 ~~--~-~~a~~~~~~G~d~I~v~~~-gG~~-------~~~g~~~~~~l~~i~~~~-----~~~~~via~GGIr~g~dv~k 271 (344)
.. . ..+..+.++|+|+|+|+|+ ||+. .+.|.|....|.++.+++ ++++.|+++||++++.|++|
T Consensus 580 ~~~~~~~i~~~v~ka~~D~I~IdG~eGGTGAap~~~~d~~GlP~~~~l~~~~~~L~~~glr~~V~l~a~Ggl~t~~Dv~k 659 (771)
T d1ea0a2 580 SRSGIGTIAAGVAKANADIILISGNSGGTGASPQTSIKFAGLPWEMGLSEVHQVLTLNRLRHRVRLRTDGGLKTGRDIVI 659 (771)
T ss_dssp CCTTHHHHHHHHHHTTCSEEEEECTTCCCSSEETTHHHHSCCCHHHHHHHHHHHHHTTTCTTTSEEEEESSCCSHHHHHH
T ss_pred CcCcHHHHHHHHHhcCCCEEEEecCCCccccccHHHhhcCCcCHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCHHHHHH
Confidence 43 3 4466677999999999997 4553 135888889999988775 56899999999999999999
Q ss_pred HHHcCCCEEEEchHHHHHhhhc---------------------------ChHHHHHHHHHHHHHHHHHHHHhCCCCHhhh
Q 019244 272 ALALGASGIFIGRPVVYSLAAE---------------------------GEKGVRRVLEMLREEFELAMALSGCRSLKEI 324 (344)
Q Consensus 272 alalGAd~V~ig~~~l~~~~~~---------------------------G~~~v~~~l~~l~~el~~~m~~~G~~~i~~l 324 (344)
+++||||+|.+||.+|++++|. ..+.|.+++..+.+|++..|..+|.++++||
T Consensus 660 a~aLGAD~v~~gt~~m~alGCi~~r~Ch~~~CP~GIaTqd~~lr~~~~~~~~~v~n~~~~~~~e~~~~~~~~G~~s~~~l 739 (771)
T d1ea0a2 660 AAMLGAEEFGIGTASLIAMGCIMVRQCHSNTCPVGVCVQDDKLRQKFVGTPEKVVNLFTFLAEEVREILAGLGFRSLNEV 739 (771)
T ss_dssp HHHTTCSEEECCHHHHHHHTCCCCCCTTTTCCTTSSSCCCTTGGGSCCCCHHHHHHHHHHHHHHHHHHHHHHTCSCSGGG
T ss_pred HHHhCCCchHHhHHHHHHhhCHHhhhccCCCCCCeeecCCHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHcCCCHHHh
Confidence 9999999999999999998862 2467999999999999999999999999998
Q ss_pred -ccccee
Q 019244 325 -TRDHIV 330 (344)
Q Consensus 325 -~~~~l~ 330 (344)
.+.++.
T Consensus 740 vG~~dll 746 (771)
T d1ea0a2 740 IGRTDLL 746 (771)
T ss_dssp TTCGGGE
T ss_pred ccchhhh
Confidence 455554
|
| >d2cu0a1 c.1.5.1 (A:3-96,A:207-480) Inosine monophosphate dehydrogenase (IMPDH) {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.86 E-value=6.6e-21 Score=181.80 Aligned_cols=262 Identities=20% Similarity=0.300 Sum_probs=171.4
Q ss_pred cccccceeeccc-CCCCCCCcceeec-ccccccceeecccccccccCChhhHHHHHHHHHcCCcc-ccC--CHHHHHHHH
Q 019244 42 AFSRILFRPRIL-IDVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM-VYK--DRNVVAQLV 116 (344)
Q Consensus 42 ~f~~i~l~pr~l-~~~~~vd~st~l~-g~~l~~Pi~iapm~~~~~~~~~~~~~lA~aA~~~g~~~-~~~--d~~~~~~~i 116 (344)
.||+|.|+|..- .+..+|||+++|- ..++..||+-|||.. -++..+|.+-+++|... +++ +.+...+.+
T Consensus 14 tfdDVlLvP~~sti~srdVdls~~~~~~~~l~iPIiss~MDt------V~~~~mA~~la~~Gglgvlhr~~~~e~~~~~v 87 (368)
T d2cu0a1 14 TFDDVLLIPQATEVEPKDVDVSTRITPNVKLNIPILSAAMDT------VTEWEMAVAMAREGGLGVIHRNMGIEEQVEQV 87 (368)
T ss_dssp CGGGEEECCCCCSSCSTTCBCCEEEETTEEESSSEEECCCTT------TCSHHHHHHHHHTTCEEEECSSSCHHHHHHHH
T ss_pred CcccEEEeCCCCcCchhhceeeEEeeCCcccCCCEEeCCCCC------cCCHHHHHHHHHCCCeeEecccCCHHHHHHHH
Confidence 699999999754 2345899999996 579999999999953 13556999999999877 343 555555555
Q ss_pred HHHHHcCCcEEEeccCCccccccHHHHHhhcCCCCcccccccccccccccccccchhhHHH-Hh-hcCCCCCcHHHHHHH
Q 019244 117 RRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAY-VA-GQIDRSLSWKDVKWL 194 (344)
Q Consensus 117 ~~a~~ag~~~l~~tvd~~~~g~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~i~~i 194 (344)
+..+..-.. +.. .+... ..+....+..+..+... ..+.. .+..-+ +. ..++.....+.++++
T Consensus 88 ~~v~~~e~~--------~~~-~~d~~--~~~~v~~~~~~~~~~r~--~~l~~---aGvd~ivID~A~Gh~~~~i~~lK~i 151 (368)
T d2cu0a1 88 KRVKRAEKY--------KNA-VRDEN--GELLVAAAVSPFDIKRA--IELDK---AGVDVIVVDTAHAHNLKAIKSMKEM 151 (368)
T ss_dssp HHHHTCCCC--------TTC-CBCTT--SCBCCEEEECTTCHHHH--HHHHH---TTCSEEEEECSCCCCHHHHHHHHHH
T ss_pred Hhhhhhhhc--------ccc-ccccC--ccEEEEeccChHHHHHH--HHHHH---cCCCEEEecCcccchhhhhhhhhhh
Confidence 555432110 000 00000 00000000000000000 00000 000000 00 012222234579999
Q ss_pred HHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCC------CCCchhhHHHHHHHHHHccC-CCcEEEecCCCCHH
Q 019244 195 QTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ------LDYVPATIMALEEVVKATQG-RIPVFLDGGVRRGT 267 (344)
Q Consensus 195 ~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~------~~~g~~~~~~l~~i~~~~~~-~~~via~GGIr~g~ 267 (344)
++.+++|+++..+.|++.+..+ .|+|+|.|.-.+|.. .-.|.|+++++.++.+.... .+|||+||||+++.
T Consensus 152 r~~~~~~vIaGNVaT~e~~~~l--~gaD~VkVGIG~Gs~CTTr~~tGvG~Pq~sAi~e~~~~~~~~~~~iiADGGi~~~G 229 (368)
T d2cu0a1 152 RQKVDADFIVGNIANPKAVDDL--TFADAVKVGIGPGSICTTRIVAGVGVPQITAVAMVADRAQEYGLYVIADGGIRYSG 229 (368)
T ss_dssp HHTCCSEEEEEEECCHHHHTTC--TTSSEEEECSSCSTTBCHHHHTCCCCCHHHHHHHHHHHHHHHTCEEEEESCCCSHH
T ss_pred hhhcccceeeccccCHHHHHhh--hcCcceeecccCcccccchhhcccccchHHHHHHHHHHHhccCCeeEecCCCCcCC
Confidence 9999999999999999988654 699999998766642 33578999999988866532 69999999999999
Q ss_pred HHHHHHHcCCCEEEEchHHH--------------------HHhhh-------------------------cCh-------
Q 019244 268 DVFKALALGASGIFIGRPVV--------------------YSLAA-------------------------EGE------- 295 (344)
Q Consensus 268 dv~kalalGAd~V~ig~~~l--------------------~~~~~-------------------------~G~------- 295 (344)
|++|||++|||+||+|++|- ++++. +|.
T Consensus 230 di~KAla~GAd~VMlG~~lAg~~Espg~~~~~~g~~~k~~~Gm~S~~a~~~~~~~~~~~~~~~~~~~~~~EG~~~~v~~~ 309 (368)
T d2cu0a1 230 DIVKAIAAGADAVMLGNLLAGTKEAPGKEVIINGRKYKQYRGMGSLGAMMKGGAERYYQGGYMKTRKFVPEGVEGVVPYR 309 (368)
T ss_dssp HHHHHHHTTCSEEEESTTTTTBTTCCSCEEEETTEEEEEEECTTSHHHHTC----------CCCCSCSSCCBCEEEEECC
T ss_pred hhheeeeeccceeeccchhccccccCCceEeeCCeEcccccCcccccccccCCcccccccccccccccCCCceEEeeCCC
Confidence 99999999999999999872 11111 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCHhhhccc
Q 019244 296 KGVRRVLEMLREEFELAMALSGCRSLKEITRD 327 (344)
Q Consensus 296 ~~v~~~l~~l~~el~~~m~~~G~~~i~~l~~~ 327 (344)
-.+++++.+|...|++.|.++|+++|+||++.
T Consensus 310 G~~~~~l~~l~gglrs~m~y~G~~~l~e~~~~ 341 (368)
T d2cu0a1 310 GTVSEVLYQLVGGLKAGMGYVGARNIRELKEK 341 (368)
T ss_dssp BCHHHHHHHHHHHHHHHHHHTTCSBHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCcccHHHHhhC
Confidence 13789999999999999999999999999753
|
| >d1ofda2 c.1.4.1 (A:431-1239) Alpha subunit of glutamate synthase, central and FMN domains {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Alpha subunit of glutamate synthase, central and FMN domains species: Synechocystis sp. [TaxId: 1143]
Probab=99.84 E-value=2.8e-20 Score=189.42 Aligned_cols=261 Identities=18% Similarity=0.136 Sum_probs=179.8
Q ss_pred ccccceeecccccccccCChhhHHHHHHHHHcCCcc----ccCCHHHHHH---HHHH-----------HHHc-CCcEEEe
Q 019244 69 KISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM----VYKDRNVVAQ---LVRR-----------AERA-GFKAIAL 129 (344)
Q Consensus 69 ~l~~Pi~iapm~~~~~~~~~~~~~lA~aA~~~g~~~----~~~d~~~~~~---~i~~-----------a~~a-g~~~l~~ 129 (344)
.+-.||.+++|++|.++ +++..+||+||.+.|... -..+++.... ++.+ .+.. +....+.
T Consensus 435 ~I~k~f~~~aMS~GslS-~~a~~ala~aa~~~G~~~ntGEGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~s~i~ 513 (809)
T d1ofda2 435 SIVKRFCTGGMSLGALS-REAHETLAIAMNRLGAKSNSGEGGEDVVRYLTLDDVDSEGNSPTLPHLHGLQNGDTANSAIK 513 (809)
T ss_dssp HHHTTEECCCBCTTTSC-HHHHHHHHHHHHHHTCBCEECTTCCCGGGGSCCCCCCTTSCCTTSTTCCSCCTTCCCCCSEE
T ss_pred hhhhhhccccccccccc-HHHHHHHHHHHHHhCceecCCCCCCCceeeeccCccccccCcccccccccccCCCCCcchhH
Confidence 55789999999999987 568899999999999987 2233432210 0000 0000 0111123
Q ss_pred ccCCccccccHHHHHhh----cCCCCccccccccccccccccc-----ccchhhHHHHhhcCCCCC-cHH----HHHHHH
Q 019244 130 TVDTPRLGRREADIKNR----FTLPPFLTLKNFQGLDLGKMDE-----ANDSGLAAYVAGQIDRSL-SWK----DVKWLQ 195 (344)
Q Consensus 130 tvd~~~~g~r~~~~~~~----~~~~~g~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~----~i~~i~ 195 (344)
.+....+|....-+.+. ..+.+|..+...+.++...+.. +...+...+++|.+++++ +.+ .|.++|
T Consensus 514 q~asgrfGv~~~~l~~~~~ieIK~~QGAKPG~GG~Lpg~KVt~~IA~~R~~~~G~~liSP~~h~diysiedL~q~I~~Lr 593 (809)
T d1ofda2 514 QIASGRFGVTPEYLMSGKQLEIKMAQGAKPGEGGQLPGKKVSEYIAMLRRSKPGVTLISPPPHHDIYSIEDLAQLIYDLH 593 (809)
T ss_dssp EECTTCTTCCHHHHHHCSEEEEECCCTTSTTSCCEECGGGCCHHHHHHHTSCTTCCEECCSSCTTCSSHHHHHHHHHHHH
T ss_pred hhhhcccCCChhhhcccceEEEEEecccccccccccchhhcCHHHHhhcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 33444455444333321 2244555555555555443321 122233445677667766 444 478888
Q ss_pred Hhc-CCcEEEEeecC--H-HHHHHHHHcCCcEEEEccC-CCCCC-------CCchhhHHHHHHHHHHc-----cCCCcEE
Q 019244 196 TIT-KLPILVKGVLT--A-EDARIAVQAGAAGIIVSNH-GARQL-------DYVPATIMALEEVVKAT-----QGRIPVF 258 (344)
Q Consensus 196 ~~~-~~PvivK~v~~--~-~~a~~~~~~G~d~I~v~~~-gG~~~-------~~g~~~~~~l~~i~~~~-----~~~~~vi 258 (344)
+.. +.||.||.+.. . ..+.-..++|+|+|+|+|+ ||+.. +.|.|....|.++.+++ ++++.|+
T Consensus 594 ~~~~~~pv~vKl~~~~g~~~ia~~vaka~aD~I~IdG~eGGTGAap~~~~~~~GlP~~~gl~~a~~~L~~~glR~~V~Li 673 (809)
T d1ofda2 594 QINPEAQVSVKLVAEIGIGTIAAGVAKANADIIQISGHDGGTGASPLSSIKHAGSPWELGVTEVHRVLMENQLRDRVLLR 673 (809)
T ss_dssp HHCTTSEEEEEEECSTTHHHHHHHHHHTTCSEEEEECTTCCCSSEEHHHHHHBCCCHHHHHHHHHHHHHHTTCGGGCEEE
T ss_pred HhCCCCceEEEEeeecChHHHHHHHhhcCCCEEEEeCCCCccccccHHHHhcCCccHHHHHHHHHHHHHHcCCCCceEEE
Confidence 876 68999999843 2 4455567899999999997 55532 35788888888887765 4689999
Q ss_pred EecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhc---------------------------ChHHHHHHHHHHHHHHHH
Q 019244 259 LDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAE---------------------------GEKGVRRVLEMLREEFEL 311 (344)
Q Consensus 259 a~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~---------------------------G~~~v~~~l~~l~~el~~ 311 (344)
++||++|+.|++||++||||+|.+||.+|++++|. .++.|.+++..+.+|++.
T Consensus 674 a~Ggl~t~~Dv~ka~aLGAD~v~~gt~~l~alGCi~~r~Ch~n~CP~GIaTqd~~l~~~~~~~~~~v~n~~~~~~~e~~~ 753 (809)
T d1ofda2 674 ADGGLKTGWDVVMAALMGAEEYGFGSIAMIAEGCIMARVCHTNNCPVGVATQQERLRQRFKGVPGQVVNFFYFIAEEVRS 753 (809)
T ss_dssp EESSCCSHHHHHHHHHTTCSEEECSHHHHHHTTCCCCCCGGGTCCTTSSSCCCHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHhCCCchhHhHHHHHHHHCHHhHhhCCCCCCCcccCCCHHHHhhCcCcHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998762 245699999999999999
Q ss_pred HHHHhCCCCHhhhc-cccee
Q 019244 312 AMALSGCRSLKEIT-RDHIV 330 (344)
Q Consensus 312 ~m~~~G~~~i~~l~-~~~l~ 330 (344)
+|..+|.++++||. +.++.
T Consensus 754 ~~a~~G~~s~~elvGr~dll 773 (809)
T d1ofda2 754 LLAHLGYRSLDDIIGRTDLL 773 (809)
T ss_dssp HHHHHTCSCGGGTTTCGGGE
T ss_pred HHHHHcCCCHHHhcChHhhh
Confidence 99999999999983 44443
|
| >d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydropyrimidine dehydrogenase, domain 4 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.79 E-value=3e-18 Score=159.99 Aligned_cols=122 Identities=18% Similarity=0.261 Sum_probs=97.0
Q ss_pred HHHHHHHHhcCCcEEEEeec---C-HHHHHHHHHcCCcEEEEccCC-CCC------------------CC---Cch----
Q 019244 189 KDVKWLQTITKLPILVKGVL---T-AEDARIAVQAGAAGIIVSNHG-ARQ------------------LD---YVP---- 238 (344)
Q Consensus 189 ~~i~~i~~~~~~PvivK~v~---~-~~~a~~~~~~G~d~I~v~~~g-G~~------------------~~---~g~---- 238 (344)
+.++++++.+++||++|... + .+.++.+.++|+|+|++.|+- ++. .. .|+
T Consensus 161 ~i~~~v~~~~~~pv~vKl~~~~~~~~~i~~~~~~~g~~gi~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~gg~sG~~i~~ 240 (312)
T d1gtea2 161 NICRWVRQAVQIPFFAKLTPNVTDIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTAIRP 240 (312)
T ss_dssp HHHHHHHHHCSSCEEEEECSCSSCHHHHHHHHHHHTCSEEEECCCEEECCCBCTTSCBSSCBTTTTBBCCEEEESGGGHH
T ss_pred HHHHHHhhccCCceeecccccchhHHHHHHHHHHhcccceEEEeecccccccccccccccccccccccccccccCcCcch
Confidence 46888999999999999763 2 344778889999999998752 210 00 122
Q ss_pred hhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCC
Q 019244 239 ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGC 318 (344)
Q Consensus 239 ~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~ 318 (344)
.+++.+.++++..+ ++|||++|||+++.|++|+|++|||+|+++|++++ +|.. +++.+.++|+.+|...|+
T Consensus 241 ~al~~v~~~~~~~~-~ipIi~~GGI~~~~d~~~~l~aGA~~Vqv~ta~~~----~G~~----~i~~i~~~L~~~m~~~g~ 311 (312)
T d1gtea2 241 IALRAVTTIARALP-GFPILATGGIDSAESGLQFLHSGASVLQVCSAVQN----QDFT----VIQDYCTGLKALLYLKSI 311 (312)
T ss_dssp HHHHHHHHHHHHST-TCCEEEESSCCSHHHHHHHHHTTCSEEEESHHHHT----SCTT----HHHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHcC-CCcEEEEcCCCCHHHHHHHHHcCCCeeEECHhhhc----cChH----HHHHHHHHHHHHHHHcCC
Confidence 24567777777764 69999999999999999999999999999999986 4663 788999999999999987
Q ss_pred C
Q 019244 319 R 319 (344)
Q Consensus 319 ~ 319 (344)
+
T Consensus 312 ~ 312 (312)
T d1gtea2 312 E 312 (312)
T ss_dssp G
T ss_pred C
Confidence 3
|
| >d1juba_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme A [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Lactococcus lactis, isozyme A [TaxId: 1358]
Probab=99.77 E-value=9.2e-18 Score=156.38 Aligned_cols=131 Identities=22% Similarity=0.232 Sum_probs=102.1
Q ss_pred HHHHHHHHhcCCcEEEEeec--CHH----HHHHHHHcCCcEEEEccCCCCC-----------C---C--C---ch----h
Q 019244 189 KDVKWLQTITKLPILVKGVL--TAE----DARIAVQAGAAGIIVSNHGARQ-----------L---D--Y---VP----A 239 (344)
Q Consensus 189 ~~i~~i~~~~~~PvivK~v~--~~~----~a~~~~~~G~d~I~v~~~gG~~-----------~---~--~---g~----~ 239 (344)
+.++++++..++|+++|... +.. .++.+.+.|++++...|.-+.. . + + |+ .
T Consensus 148 ~~~~~v~~~~~~pv~vKl~p~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~sg~~l~~~ 227 (311)
T d1juba_ 148 KLLKEVFTFFTKPLGVKLPPYFDLVHFDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAYIKPT 227 (311)
T ss_dssp HHHHHHTTTCCSCEEEEECCCCSHHHHHHHHHHHTTSCCCEEEECCCEEEEECEETTTTEESCSGGGGEEEEESGGGHHH
T ss_pred HHHHHhhcccccceeecccccchhhHHHHHHHHHHhhccceEeccccccccccccccccccccccccccCCccccccCch
Confidence 45888998889999999974 222 2556778889998876642210 0 0 1 12 2
Q ss_pred hHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCC
Q 019244 240 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCR 319 (344)
Q Consensus 240 ~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~~ 319 (344)
++..+.++++..+.++|||++|||+|+.|+++++++||++|++++.+++ +|.. +++.+.+||+.+|...|++
T Consensus 228 al~~i~~i~~~~~~~~~Iig~GGI~s~~Da~~~i~aGA~~Vql~tal~~----~Gp~----~i~~i~~~L~~~m~~~G~~ 299 (311)
T d1juba_ 228 ALANVRAFYTRLKPEIQIIGTGGIETGQDAFEHLLCGATMLQIGTALHK----EGPA----IFDRIIKELEEIMNQKGYQ 299 (311)
T ss_dssp HHHHHHHHHTTSCTTSEEEEESSCCSHHHHHHHHHHTCSEEEECHHHHH----HCTH----HHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhcCCCeeEEecCCcCCHHHHHHHHHcCCCceeeeHhhHh----cChH----HHHHHHHHHHHHHHHcCCC
Confidence 3455666666666689999999999999999999999999999999987 3663 7889999999999999999
Q ss_pred CHhhhccc
Q 019244 320 SLKEITRD 327 (344)
Q Consensus 320 ~i~~l~~~ 327 (344)
|++|+++.
T Consensus 300 si~e~~G~ 307 (311)
T d1juba_ 300 SIADFHGK 307 (311)
T ss_dssp SGGGTTTC
T ss_pred CHHHhcCc
Confidence 99999874
|
| >d1d3ga_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=3.3e-17 Score=156.30 Aligned_cols=124 Identities=24% Similarity=0.363 Sum_probs=99.1
Q ss_pred HhcCCcEEEEeec--CHH----HHHHHHHcCCcEEEEccCC-CCC--------C-CC---c----hhhHHHHHHHHHHcc
Q 019244 196 TITKLPILVKGVL--TAE----DARIAVQAGAAGIIVSNHG-ARQ--------L-DY---V----PATIMALEEVVKATQ 252 (344)
Q Consensus 196 ~~~~~PvivK~v~--~~~----~a~~~~~~G~d~I~v~~~g-G~~--------~-~~---g----~~~~~~l~~i~~~~~ 252 (344)
...++|+++|... +.. .++.+.++|+++|++.|.- +.. . .+ | +.....+..+++..+
T Consensus 217 ~~~~~Pv~vKlsP~~~~~~i~~~a~~~~~~g~~gi~~~nt~~~~~~~~~~~~~~~~gg~sG~~~~~i~l~~v~~v~~~~~ 296 (367)
T d1d3ga_ 217 RVHRPAVLVKIAPDLTSQDKEDIASVVKELGIDGLIVTNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTIREMYALTQ 296 (367)
T ss_dssp GGGCCEEEEEECSCCCHHHHHHHHHHHHHHTCCEEEECCCBSCCCTTCCCTTTTSSSEEEEGGGHHHHHHHHHHHHHHTT
T ss_pred cccCCccccccCcccchhhhhhhHHHHHhhhhheeecccccccccccccccccccccccccccchhhhHHHHHHHHHHhC
Confidence 3447899999973 332 3778899999999998752 110 0 01 2 224566777777776
Q ss_pred CCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHhhhccc
Q 019244 253 GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRD 327 (344)
Q Consensus 253 ~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~~~i~~l~~~ 327 (344)
.++|||++|||.|+.|+++.|.+||++|++++.+++. |. .+++.+.+||+.+|...|+++++|+++.
T Consensus 297 ~~ipIig~GGI~s~~Da~e~i~aGAs~VQi~Ta~~~~----Gp----~ii~~I~~~L~~~l~~~G~~si~dl~G~ 363 (367)
T d1d3ga_ 297 GRVPIIGVGGVSSGQDALEKIRAGASLVQLYTALTFW----GP----PVVGKVKRELEALLKEQGFGGVTDAIGA 363 (367)
T ss_dssp TCSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHHH----CT----HHHHHHHHHHHHHHHHTTCSSHHHHTTG
T ss_pred CCccEEEECCCCCHHHHHHHHHcCCCHHHhhHHHHhc----Cc----HHHHHHHHHHHHHHHHcCCCCHHHhcCh
Confidence 6899999999999999999999999999999998763 66 4788999999999999999999999875
|
| >d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme B [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Lactococcus lactis, isozyme B [TaxId: 1358]
Probab=99.72 E-value=5e-17 Score=151.04 Aligned_cols=128 Identities=23% Similarity=0.276 Sum_probs=101.6
Q ss_pred HHHHHHHHhcCCcEEEEeec----CHHHHHHHHHcCCcEEEEccCCCCC-----------C--C---Cch----hhHHHH
Q 019244 189 KDVKWLQTITKLPILVKGVL----TAEDARIAVQAGAAGIIVSNHGARQ-----------L--D---YVP----ATIMAL 244 (344)
Q Consensus 189 ~~i~~i~~~~~~PvivK~v~----~~~~a~~~~~~G~d~I~v~~~gG~~-----------~--~---~g~----~~~~~l 244 (344)
+.++++++..++|+++|... ..+.++.+.++|++++++.|..+.. . . .|+ .+++.+
T Consensus 154 ~~~~~v~~~~~~p~~vkl~~~~~~~~~~a~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~sG~~i~~~~l~~i 233 (311)
T d1ep3a_ 154 ALVKACKAVSKVPLYVKLSPNVTDIVPIAKAVEAAGADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVALKLI 233 (311)
T ss_dssp HHHHHHHHHCSSCEEEEECSCSSCSHHHHHHHHHTTCSEEEECCCEEECCBCTTTCSBSSTTSCEEEESGGGHHHHHHHH
T ss_pred HHHHHHHhccCCCeeeeecccccchHHHHHHHHHhhhheeEEEeeccccccccccccccccccCCCCCCCcccchhHHHH
Confidence 45777888889999999862 4577888999999999998753210 0 0 122 235566
Q ss_pred HHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHhhh
Q 019244 245 EEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEI 324 (344)
Q Consensus 245 ~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~~~i~~l 324 (344)
.++++.+ ++|||++|||+|+.|+.+++.+|||+||+||.++. ++ .++..+.+||..+|...|+++++|+
T Consensus 234 ~~i~~~~--~ipIig~GGI~s~~Da~~~i~~GAd~V~ig~~~~~-----~P----~i~~~I~~~L~~~m~~~g~~si~e~ 302 (311)
T d1ep3a_ 234 HQVAQDV--DIPIIGMGGVANAQDVLEMYMAGASAVAVGTANFA-----DP----FVCPKIIDKLPELMDQYRIESLESL 302 (311)
T ss_dssp HHHHTTC--SSCEEECSSCCSHHHHHHHHHHTCSEEEECTHHHH-----CT----THHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHhhhc--ceeEEEeCCcCCHHHHHHHHHcCCCEEEecHHHHc-----CC----hHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 6766654 79999999999999999999999999999999875 22 2678899999999999999999999
Q ss_pred ccc
Q 019244 325 TRD 327 (344)
Q Consensus 325 ~~~ 327 (344)
.+.
T Consensus 303 ~g~ 305 (311)
T d1ep3a_ 303 IQE 305 (311)
T ss_dssp HHH
T ss_pred HHH
Confidence 763
|
| >d1tv5a1 c.1.4.1 (A:158-566) Dihydroorotate dehydrogenase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Plasmodium falciparum [TaxId: 5833]
Probab=99.64 E-value=3.2e-15 Score=144.27 Aligned_cols=121 Identities=23% Similarity=0.281 Sum_probs=98.4
Q ss_pred CCcEEEEeec--CH----HHHHHHHHcCCcEEEEccCC-CCC-------CCC---ch----hhHHHHHHHHHHccCCCcE
Q 019244 199 KLPILVKGVL--TA----EDARIAVQAGAAGIIVSNHG-ARQ-------LDY---VP----ATIMALEEVVKATQGRIPV 257 (344)
Q Consensus 199 ~~PvivK~v~--~~----~~a~~~~~~G~d~I~v~~~g-G~~-------~~~---g~----~~~~~l~~i~~~~~~~~~v 257 (344)
..||++|... +. +.+..+.+.|+|+|++.|.- ++. ..+ |+ .+...+.++++.+++++||
T Consensus 266 ~ppi~vKlsPd~~~~~i~~i~~~~~~~g~dgii~~Nt~~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~v~~~~~~~ipI 345 (409)
T d1tv5a1 266 KPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIPI 345 (409)
T ss_dssp CCEEEEEECSCCCHHHHHHHHHHHHHTTCSEEEECCCBSCCCCCGGGTTCCSEEEEHHHHHHHHHHHHHHHHHTTTCSCE
T ss_pred CCceEEEeCCCCCchhhHHHHHHHHhccccceecccccccccccccccccCCcccchhHHHHHHHHHHHHHHHcCCCceE
Confidence 4589999974 33 44678899999999999852 221 112 22 2456788888888778999
Q ss_pred EEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHhhhccc
Q 019244 258 FLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRD 327 (344)
Q Consensus 258 ia~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~~~i~~l~~~ 327 (344)
|++|||.|+.|+++.+.+||++|+|+|.+++. |.. +++.+.+||..+|...|+++++|+.+.
T Consensus 346 IGvGGI~s~~Da~e~i~AGAs~VQv~T~li~~----Gp~----~v~~I~~~L~~~l~~~g~~~i~e~iG~ 407 (409)
T d1tv5a1 346 IASGGIFSGLDALEKIEAGASVCQLYSCLVFN----GMK----SAVQIKRELNHLLYQRGYYNLKEAIGR 407 (409)
T ss_dssp EEESSCCSHHHHHHHHHTTEEEEEESHHHHHH----GGG----HHHHHHHHHHHHHHHHTCSSSGGGTTT
T ss_pred EEECCCCCHHHHHHHHHcCCCHHhhhhHHHhc----ChH----HHHHHHHHHHHHHHHcCCCCHHHhcCC
Confidence 99999999999999999999999999999873 553 788999999999999999999999864
|
| >d2b4ga1 c.1.4.1 (A:2-313) Dihydroorotate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=99.61 E-value=1.1e-14 Score=135.47 Aligned_cols=130 Identities=19% Similarity=0.174 Sum_probs=94.7
Q ss_pred HHHHHHHHhcCCcEEEEeec--CHHH----HHHHHHc-CCcEEEEccCCCC---------C--C-----C---Cchh---
Q 019244 189 KDVKWLQTITKLPILVKGVL--TAED----ARIAVQA-GAAGIIVSNHGAR---------Q--L-----D---YVPA--- 239 (344)
Q Consensus 189 ~~i~~i~~~~~~PvivK~v~--~~~~----a~~~~~~-G~d~I~v~~~gG~---------~--~-----~---~g~~--- 239 (344)
+.++++++.+++|+++|... +... +..+.+. +++++...|.-+. + . . .|++
T Consensus 148 ~i~~~v~~~~~~pi~vKl~p~~~~~~~~~~~~~~~~~~~~~~i~~~nt~~~~~~~~~~~~~~~~~~~~~~GGlSG~~l~~ 227 (312)
T d2b4ga1 148 TYLQKVSEAYGLPFGVKMPPYFDIAHFDMAAAVLNDFPLVKFITCVNSIGNGLVIDPANETVVIKPKQGFGGLGGKYVLP 227 (312)
T ss_dssp HHHHHHHHHHCSCEEEEECCCCCHHHHHHHHHHHTTCTTEEEEEECCCEEEEECEETTTTEESCCGGGGEEEEEEGGGHH
T ss_pred HHHHHhhccccccceeccccccchhHHHHHHHHHHhhhhhhhhhhcccccccccccccCCCccccccccccCcccccccc
Confidence 46888888889999999974 3222 2223333 3444544332111 0 0 0 1222
Q ss_pred -hHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCC
Q 019244 240 -TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGC 318 (344)
Q Consensus 240 -~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~ 318 (344)
+...+.++++..+ ..+||+.|||.|+.|+++.+.+||++|++++.+++. |+ .+++.+.+||..+|...|+
T Consensus 228 ~al~~v~~~~~~~~-~~~Iig~GGI~s~~Da~e~i~aGAs~Vqv~Tal~~~----Gp----~~i~~i~~~L~~~l~~~G~ 298 (312)
T d2b4ga1 228 TALANVNAFFRRCP-DKLVFGCGGVYSGEEAFLHILAGASMVQVGTALHDE----GP----IIFARLNKELQEIMTNKGY 298 (312)
T ss_dssp HHHHHHHHHHHHCT-TSEEEEESSCCSHHHHHHHHHHTEEEEEESHHHHHH----CT----THHHHHHHHHHHHHHHHTC
T ss_pred hhhHHHHHHHHHcC-CCceeecCCcCCHHHHHHHHHcCCChheeehhhHhc----Cc----HHHHHHHHHHHHHHHHcCC
Confidence 4556666666664 567999999999999999999999999999999873 66 3788999999999999999
Q ss_pred CCHhhhccc
Q 019244 319 RSLKEITRD 327 (344)
Q Consensus 319 ~~i~~l~~~ 327 (344)
+|++|+++.
T Consensus 299 ~si~e~~G~ 307 (312)
T d2b4ga1 299 KTLDEFRGR 307 (312)
T ss_dssp CSGGGTTTC
T ss_pred CCHHHHcCe
Confidence 999999874
|
| >d1f76a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=99.42 E-value=3.8e-12 Score=119.21 Aligned_cols=108 Identities=19% Similarity=0.239 Sum_probs=78.9
Q ss_pred HHHhcCCcEEEEeec--CH----HHHHHHHHcCCcEEEEccCC-CCC------C---CC---ch----hhHHHHHHHHHH
Q 019244 194 LQTITKLPILVKGVL--TA----EDARIAVQAGAAGIIVSNHG-ARQ------L---DY---VP----ATIMALEEVVKA 250 (344)
Q Consensus 194 i~~~~~~PvivK~v~--~~----~~a~~~~~~G~d~I~v~~~g-G~~------~---~~---g~----~~~~~l~~i~~~ 250 (344)
.+...++||++|... +. +.+..+.+.|++++...|.- ++. . .+ |+ .++..+.++++.
T Consensus 206 ~~~~~~~Pv~vKlsp~~~~~~i~~~a~~~~~~g~~gv~~int~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~v~~v~~~ 285 (336)
T d1f76a_ 206 AMHHKYVPIAVKIAPDLSEEELIQVADSLVRHNIDGVIATNTTLDRSLVQGMKNCDQTGGLSGRPLQLKSTEIIRRLSLE 285 (336)
T ss_dssp HHHTSCCCEEEECCSCCCHHHHHHHHHHHHHTTCSEEEECCCBCCCTTSTTSTTTTCSSEEEEGGGHHHHHHHHHHHHHH
T ss_pred hhccCcCCcccccchhhhhhhhhhhHHHHHhcCccchhhhhhhhcccccccccccccccccccchhHHHHHHHHHHHHHH
Confidence 334457999999974 32 34667888999999998742 211 0 11 22 245667777777
Q ss_pred ccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcChHHHHHHHHHHHHHH
Q 019244 251 TQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEF 309 (344)
Q Consensus 251 ~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~el 309 (344)
++.++|||++|||.|++|+.+.+.+||++|++++.++| +|+. +++.+.+||
T Consensus 286 ~~~~ipIIG~GGI~s~~Da~e~i~aGAsaVQv~Tal~~----~Gp~----ii~~I~~eL 336 (336)
T d1f76a_ 286 LNGRLPIIGVGGIDSVIAAREKIAAGASLVQIYSGFIF----KGPP----LIKEIVTHI 336 (336)
T ss_dssp HTTSSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHH----HCHH----HHHHHHHHC
T ss_pred cCCCCeEEEECCCCCHHHHHHHHHcCCcHHHHHHHHHh----cChH----HHHHHHhhC
Confidence 76789999999999999999999999999999999876 3664 455555553
|
| >d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.36 E-value=2e-12 Score=114.08 Aligned_cols=100 Identities=20% Similarity=0.208 Sum_probs=81.8
Q ss_pred cHHHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhh-HHHHHHHHHHccCCCcEEEecCCCC
Q 019244 187 SWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPAT-IMALEEVVKATQGRIPVFLDGGVRR 265 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~-~~~l~~i~~~~~~~~~via~GGIr~ 265 (344)
.|+.+++++..+..+++.+.+.|.++++.+.++|+|+|.++++++++.+..... ...+.++.... ++||+++|||+|
T Consensus 117 ~~~~~~~~~~~~~~~~v~~~v~t~~~a~~a~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ipvia~GGI~t 194 (230)
T d1yxya1 117 IASFIRQVKEKYPNQLLMADISTFDEGLVAHQAGIDFVGTTLSGYTPYSRQEAGPDVALIEALCKA--GIAVIAEGKIHS 194 (230)
T ss_dssp HHHHHHHHHHHCTTCEEEEECSSHHHHHHHHHTTCSEEECTTTTSSTTSCCSSSCCHHHHHHHHHT--TCCEEEESCCCS
T ss_pred HHHHHHHHHhcCCCceEecCCCCHHHHHHHHhcCCCEEEeecccccccccccchHHHHHHHHHhcC--CCeEEEeCCCCC
Confidence 477899999988888999999999999999999999999988876655443222 22244444433 799999999999
Q ss_pred HHHHHHHHHcCCCEEEEchHHHH
Q 019244 266 GTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 266 g~dv~kalalGAd~V~ig~~~l~ 288 (344)
++|+.+++++|||+|++|+++..
T Consensus 195 ~~d~~~al~~GAd~V~vGsAi~~ 217 (230)
T d1yxya1 195 PEEAKKINDLGVAGIVVGGAITR 217 (230)
T ss_dssp HHHHHHHHTTCCSEEEECHHHHC
T ss_pred HHHHHHHHHcCCCEEEEChhhcC
Confidence 99999999999999999998753
|
| >d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Staphylococcus aureus [TaxId: 1280]
Probab=99.30 E-value=1.4e-11 Score=107.69 Aligned_cols=100 Identities=18% Similarity=0.203 Sum_probs=84.2
Q ss_pred cHHHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCC----CchhhHHHHHHHHHHccCCCcEEEecC
Q 019244 187 SWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLD----YVPATIMALEEVVKATQGRIPVFLDGG 262 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~----~g~~~~~~l~~i~~~~~~~~~via~GG 262 (344)
.++.++++++....+++...+.+.++++++.+.|+|+|.+.+++++... ...+.++.+.++++.+ ++||+++||
T Consensus 106 ~~~~~~~~~~~~~~~~v~~~~~t~~~a~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~iPVia~GG 183 (222)
T d1y0ea_ 106 LDELVSYIRTHAPNVEIMADIATVEEAKNAARLGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSV--DAKVIAEGN 183 (222)
T ss_dssp HHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTCSEEECTTTTSSTTSTTCCTTHHHHHHHHHHHHHC--CSEEEEESS
T ss_pred HHHHHHHHHHhCCceEEeecCCCHHHHHHHHHcCCCeEEEeccCCcccccCccchhhHHHHHHHHHhcC--CCcEEEeCC
Confidence 4567888888888888888899999999999999999998887654322 2234567788877766 899999999
Q ss_pred CCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 263 VRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 263 Ir~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
|+|++|+.+++++|||+|++||++..
T Consensus 184 I~t~~d~~~~~~~GAdgV~iGsAi~r 209 (222)
T d1y0ea_ 184 VITPDMYKRVMDLGVHCSVVGGAITR 209 (222)
T ss_dssp CCSHHHHHHHHHTTCSEEEECHHHHC
T ss_pred CCCHHHHHHHHHcCCCEEEEchhhcC
Confidence 99999999999999999999998853
|
| >d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Putative flavin oxidoreducatase TM0096 species: Thermotoga maritima [TaxId: 2336]
Probab=99.19 E-value=3.6e-10 Score=104.26 Aligned_cols=138 Identities=24% Similarity=0.311 Sum_probs=98.4
Q ss_pred CcHHHHHHHHHhcCCcEEEEeec------CHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEE
Q 019244 186 LSWKDVKWLQTITKLPILVKGVL------TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 259 (344)
Q Consensus 186 ~~~~~i~~i~~~~~~PvivK~v~------~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via 259 (344)
...+.++.+++.+++||.+|... +.+.++.+.++|++.|+|.+.-..+...+++.++.++++ ..++|||+
T Consensus 109 ~~~~iv~~~~~~~~~pvsvK~RlG~d~~~~~~~~~~l~~~G~~~itvH~Rt~~q~~~~~a~~~~i~~~----~~~ipvi~ 184 (305)
T d1vhna_ 109 HFRYIVRELRKSVSGKFSVKTRLGWEKNEVEEIYRILVEEGVDEVFIHTRTVVQSFTGRAEWKALSVL----EKRIPTFV 184 (305)
T ss_dssp HHHHHHHHHHHHCSSEEEEEEESCSSSCCHHHHHHHHHHTTCCEEEEESSCTTTTTSSCCCGGGGGGS----CCSSCEEE
T ss_pred HHHHHhhhhhhhcccccccccccCcccchhhHHHHHHHHhCCcEEEechhhhhhccccchhhhHHHhh----hhhhhhhc
Confidence 34567899999999999999862 346689999999999999543333445567777776544 34799999
Q ss_pred ecCCCCHHHHHHHHH-cCCCEEEEch-----HHHHHhhh----cCh---HHHHHHHHHHHHHHHHHHHHhCCC-CHhhhc
Q 019244 260 DGGVRRGTDVFKALA-LGASGIFIGR-----PVVYSLAA----EGE---KGVRRVLEMLREEFELAMALSGCR-SLKEIT 325 (344)
Q Consensus 260 ~GGIr~g~dv~kala-lGAd~V~ig~-----~~l~~~~~----~G~---~~v~~~l~~l~~el~~~m~~~G~~-~i~~l~ 325 (344)
+|||.|..|+.+++. .|+|+||+|| |+++.-.. .+. ....+.++.+.+.++......|.. .+..++
T Consensus 185 NGdI~s~~d~~~~l~~tg~dgVMiGRgal~nP~if~~i~~~l~~~~~~~~~~~e~~~~~~~~~~~~~~~~g~~~~l~~~r 264 (305)
T d1vhna_ 185 SGDIFTPEDAKRALEESGCDGLLVARGAIGRPWIFKQIKDFLRSGKYSEPSREEILRTFERHLELLIKTKGERKAVVEMR 264 (305)
T ss_dssp ESSCCSHHHHHHHHHHHCCSEEEESGGGTTCTTHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred ccccccHHHHHHHHHhcCCCeEehhHHHHHhhhHhhhhhhhhcCCCcccchhHHHHHhHHHHHHHHHHhcCcchHHHHHH
Confidence 999999999999997 6999999999 45554211 111 123455666777777776666643 455555
Q ss_pred cc
Q 019244 326 RD 327 (344)
Q Consensus 326 ~~ 327 (344)
+.
T Consensus 265 kh 266 (305)
T d1vhna_ 265 KF 266 (305)
T ss_dssp TT
T ss_pred HH
Confidence 44
|
| >d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=98.75 E-value=4.2e-08 Score=84.70 Aligned_cols=165 Identities=13% Similarity=0.120 Sum_probs=102.9
Q ss_pred cCCHHHHHHHHHHHHHcCCcEEEeccCCccccccHHHHHhhcCCCC-cccccccccccccccccccchhhHHHHhhcCCC
Q 019244 106 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP-FLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDR 184 (344)
Q Consensus 106 ~~d~~~~~~~i~~a~~ag~~~l~~tvd~~~~g~r~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (344)
..+.+....+++.+.++|++.+.+|..+|..-...++++..+. |. -++...+- ..+.+......+.+..+ .+
T Consensus 17 ~~~~~~a~~~~~al~~~Gi~~iEitlr~p~a~~~i~~l~~~~~-~~~~vGaGTV~--~~~~~~~a~~aGa~fiv----sP 89 (202)
T d1wa3a1 17 ANSVEEAKEKALAVFEGGVHLIEITFTVPDADTVIKELSFLKE-KGAIIGAGTVT--SVEQCRKAVESGAEFIV----SP 89 (202)
T ss_dssp CSSHHHHHHHHHHHHHTTCCEEEEETTSTTHHHHHHHTHHHHH-TTCEEEEESCC--SHHHHHHHHHHTCSEEE----CS
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHHhcC-CCcEEEecccc--cHHHHHHHHhhcccEEe----CC
Confidence 3567777788888889999999999988864332233332211 10 01111111 00000000111111122 23
Q ss_pred CCcHHHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCC
Q 019244 185 SLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 264 (344)
Q Consensus 185 ~~~~~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr 264 (344)
.++-+.++..++ .++|++ -++.|+.++..+.++|++.+.+.-.. ..|+ ..++.+...+ .+++++.+|||
T Consensus 90 ~~~~~v~~~~~~-~~i~~i-PGv~TpsEi~~A~~~G~~~lK~fPa~----~~G~---~~lk~l~~p~-p~i~~iptGGI- 158 (202)
T d1wa3a1 90 HLDEEISQFCKE-KGVFYM-PGVMTPTELVKAMKLGHTILKLFPGE----VVGP---QFVKAMKGPF-PNVKFVPTGGV- 158 (202)
T ss_dssp SCCHHHHHHHHH-HTCEEE-CEECSHHHHHHHHHTTCCEEEETTHH----HHHH---HHHHHHHTTC-TTCEEEEBSSC-
T ss_pred CCcHHHHHHHHh-cCCcee-CCcCcHHHHHHHHHCCCCEEEecchh----hcCH---HHHHHHhCcc-cCCcEEeeCCC-
Confidence 445555666655 477766 46899999999999999999996321 0122 3455554444 37999999999
Q ss_pred CHHHHHHHHHcCCCEEEEchHHHH
Q 019244 265 RGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 265 ~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
+.+++..++.+||.+|++|+.++.
T Consensus 159 ~~~n~~~~l~aga~avg~Gs~l~~ 182 (202)
T d1wa3a1 159 NLDNVCEWFKAGVLAVGVGSALVK 182 (202)
T ss_dssp CTTTHHHHHHHTCSCEEECHHHHC
T ss_pred CHHHHHHHHHCCCeEEEEchhhcC
Confidence 789999999999999999998763
|
| >d1mzha_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Aquifex aeolicus [TaxId: 63363]
Probab=98.70 E-value=2.3e-08 Score=87.64 Aligned_cols=93 Identities=25% Similarity=0.266 Sum_probs=69.7
Q ss_pred HHHHHHHHhcCCcEEEEee-----cCHHH----HHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEE
Q 019244 189 KDVKWLQTITKLPILVKGV-----LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 259 (344)
Q Consensus 189 ~~i~~i~~~~~~PvivK~v-----~~~~~----a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via 259 (344)
++++.+++..+.+ ++|.+ ++.++ ++.+.++|+|+|..|+.-+ .+..+++.+..+++.+++++.|-+
T Consensus 106 ~ei~~v~~~~~~~-~lKVIlEt~~L~~~ei~~a~~~a~~aGadfiKTSTG~~----~~gat~e~v~~m~~~~~~~~~iKa 180 (225)
T d1mzha_ 106 EELKEIFRETPSA-VHKVIVETPYLNEEEIKKAVEICIEAGADFIKTSTGFA----PRGTTLEEVRLIKSSAKGRIKVKA 180 (225)
T ss_dssp HHHHHHHHTCTTS-EEEEECCGGGCCHHHHHHHHHHHHHHTCSEEECCCSCS----SSCCCHHHHHHHHHHHTTSSEEEE
T ss_pred HHHHHHHHhccCc-eeehhhhhccCCHHHHHHHHHHHHHcccceEeecCCCC----CCCCCHHHHHHHHHHhCCCceEEC
Confidence 4577777766433 45776 45544 4678899999999986422 123456667667777777899999
Q ss_pred ecCCCCHHHHHHHHHcCCCEEEEchHH
Q 019244 260 DGGVRRGTDVFKALALGASGIFIGRPV 286 (344)
Q Consensus 260 ~GGIr~g~dv~kalalGAd~V~ig~~~ 286 (344)
+||||+..|+.+.+.+||+-++.++.+
T Consensus 181 sGGIrt~~~a~~~i~~Ga~RiGtSs~~ 207 (225)
T d1mzha_ 181 SGGIRDLETAISMIEAGADRIGTSSGI 207 (225)
T ss_dssp ESSCCSHHHHHHHHHTTCSEEEESCHH
T ss_pred cCCCCCHHHHHHHHHhchhheecCcHH
Confidence 999999999999999999998776643
|
| >d1o0ya_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Thermotoga maritima [TaxId: 2336]
Probab=98.66 E-value=1.1e-07 Score=84.39 Aligned_cols=92 Identities=24% Similarity=0.179 Sum_probs=69.3
Q ss_pred HHHHHHHHhcCCcEEEEee-----cCHHH----HHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEE
Q 019244 189 KDVKWLQTITKLPILVKGV-----LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 259 (344)
Q Consensus 189 ~~i~~i~~~~~~PvivK~v-----~~~~~----a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via 259 (344)
++|+.+++..+ +.++|.+ ++.++ ++.+.++|+|+|..|+.-+ .+..+.+.+..+++.+++++.|-+
T Consensus 139 ~ei~~v~~~~~-~~~lKVIlEt~~L~~~e~~~a~~ia~~aGadfvKTSTGf~----~~gat~e~V~~m~~~~~~~~giKa 213 (251)
T d1o0ya_ 139 EDIRSVVESVK-GKVVKVIIETCYLDTEEKIAACVISKLAGAHFVKTSTGFG----TGGATAEDVHLMKWIVGDEMGVKA 213 (251)
T ss_dssp HHHHHHHHHTT-TSEEEEECCGGGCCHHHHHHHHHHHHHTTCSEEECCCSSS----SCCCCHHHHHHHHHHHCTTSEEEE
T ss_pred HHHHHHHHHhc-ccceeeeecccccCcHHHHHHHHHHHHhCcceeeccCCCC----CCCcCHHHHHHHHHHhCCCceEec
Confidence 46888888764 4567887 44444 4668899999999986322 123456666666666777899999
Q ss_pred ecCCCCHHHHHHHHHcCCCEEEEchH
Q 019244 260 DGGVRRGTDVFKALALGASGIFIGRP 285 (344)
Q Consensus 260 ~GGIr~g~dv~kalalGAd~V~ig~~ 285 (344)
+|||||..|+.+.+.+||+.++..+.
T Consensus 214 sGGIrt~~~a~~~i~aGa~riGtSs~ 239 (251)
T d1o0ya_ 214 SGGIRTFEDAVKMIMYGADRIGTSSG 239 (251)
T ss_dssp ESSCCSHHHHHHHHHTTCSEEEESCH
T ss_pred cCCcCCHHHHHHHHHHhhHHhCCCcH
Confidence 99999999999999999999876553
|
| >d1ub3a_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Thermus thermophilus [TaxId: 274]
Probab=98.64 E-value=5e-08 Score=84.62 Aligned_cols=93 Identities=24% Similarity=0.300 Sum_probs=70.5
Q ss_pred HHHHHHHHhcCCcEEEEee-----cCHHH----HHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEE
Q 019244 189 KDVKWLQTITKLPILVKGV-----LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 259 (344)
Q Consensus 189 ~~i~~i~~~~~~PvivK~v-----~~~~~----a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via 259 (344)
++++.+++..+. ..+|.+ ++.++ ++.+.++|+|+|..|+.-+ .+..+.+.+..+++.+++++.|-+
T Consensus 106 ~ei~~v~~~~~~-~~lKVIlEt~~L~~~ei~~a~~~a~~aGadfiKTSTG~~----~~gat~e~v~~m~~~~~~~~~iKa 180 (211)
T d1ub3a_ 106 AEVRAVREAVPQ-AVLKVILETGYFSPEEIARLAEAAIRGGADFLKTSTGFG----PRGASLEDVALLVRVAQGRAQVKA 180 (211)
T ss_dssp HHHHHHHHHSTT-SEEEEECCGGGSCHHHHHHHHHHHHHHTCSEEECCCSSS----SCCCCHHHHHHHHHHHTTSSEEEE
T ss_pred HHHHHHHHhccC-CceEEEeccccCCHHHHHHHHHHHHHhccceEEecCCCC----CCCCCHHHHHHHHHHhCCCceEEC
Confidence 468888887753 456877 45554 4668899999999986321 122456666666677777899999
Q ss_pred ecCCCCHHHHHHHHHcCCCEEEEchHH
Q 019244 260 DGGVRRGTDVFKALALGASGIFIGRPV 286 (344)
Q Consensus 260 ~GGIr~g~dv~kalalGAd~V~ig~~~ 286 (344)
+|||||..|+.+.+.+||+-++..+..
T Consensus 181 sGGIrt~~~a~~~l~aGa~riGtSs~~ 207 (211)
T d1ub3a_ 181 AGGIRDRETALRMLKAGASRLGTSSGV 207 (211)
T ss_dssp ESSCCSHHHHHHHHHTTCSEEEETTHH
T ss_pred cCCCCCHHHHHHHHHHhhhHhccCcHH
Confidence 999999999999999999998876653
|
| >d1n7ka_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=98.61 E-value=9.7e-08 Score=84.11 Aligned_cols=96 Identities=22% Similarity=0.231 Sum_probs=61.0
Q ss_pred cHHHHHHHHHhc-CCcEEEEee-----cCHHH----HHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCc
Q 019244 187 SWKDVKWLQTIT-KLPILVKGV-----LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIP 256 (344)
Q Consensus 187 ~~~~i~~i~~~~-~~PvivK~v-----~~~~~----a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~ 256 (344)
.|+.+.++.+.. ..+..+|.+ ++.++ ++.+.++|+|+|..|+.-+. ....+.....+.+. ..+.++.
T Consensus 118 ~~~ev~~~~~~~~~~g~~lKVIlEt~~L~~~~i~~a~~~a~~aGadFVKTSTG~~~-~gat~~~~~~l~~~--~~~~~vg 194 (234)
T d1n7ka_ 118 VYREVSGIVKLAKSYGAVVKVILEAPLWDDKTLSLLVDSSRRAGADIVKTSTGVYT-KGGDPVTVFRLASL--AKPLGMG 194 (234)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECCGGGSCHHHHHHHHHHHHHTTCSEEESCCSSSC-CCCSHHHHHHHHHH--HGGGTCE
T ss_pred hHHHHHHHHHHHhccCceEEEEEeccccchHHHHHHHHHHHHhhhhheeecccccC-CCCCHHHHHHHHHH--hcCCCCc
Confidence 455555555433 234567876 45544 45577999999998753111 11112222223222 2234799
Q ss_pred EEEecCCCCHHHHHHHHHcCCCEEEEchH
Q 019244 257 VFLDGGVRRGTDVFKALALGASGIFIGRP 285 (344)
Q Consensus 257 via~GGIr~g~dv~kalalGAd~V~ig~~ 285 (344)
|-++|||||..|+.+++.+||+-++..+.
T Consensus 195 IKasGGIrt~~~a~~~i~aGa~rIGtSs~ 223 (234)
T d1n7ka_ 195 VKASGGIRSGIDAVLAVGAGADIIGTSSA 223 (234)
T ss_dssp EEEESSCCSHHHHHHHHHTTCSEEEETTH
T ss_pred EEeeCCcCCHHHHHHHHHccCceeecchH
Confidence 99999999999999999999998776553
|
| >d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: NADPH dehydrogenase NamA species: Bacillus subtilis [TaxId: 1423]
Probab=98.44 E-value=9e-07 Score=82.05 Aligned_cols=99 Identities=20% Similarity=0.200 Sum_probs=75.8
Q ss_pred HHHHHHHHHhcCCcEEEEee--------cCH----HHHHHHHHcCCcEEEEccCCCCCCC--Cch-hhHHHHHHHHHHcc
Q 019244 188 WKDVKWLQTITKLPILVKGV--------LTA----EDARIAVQAGAAGIIVSNHGARQLD--YVP-ATIMALEEVVKATQ 252 (344)
Q Consensus 188 ~~~i~~i~~~~~~PvivK~v--------~~~----~~a~~~~~~G~d~I~v~~~gG~~~~--~g~-~~~~~l~~i~~~~~ 252 (344)
.+.++.||+.++.|++++.. .+. +.++.+.++|+|.+.++.......+ ..+ ........+++.+
T Consensus 197 ~Eiv~air~~~~~~~~vr~~~~~~~~~g~~~~~~~~~~~~l~~~g~d~~~~s~g~~~~~~~~~~~~~~~~~~~~ik~~~- 275 (337)
T d1z41a1 197 REIIDEVKQVWDGPLFVRVSASDYTDKGLDIADHIGFAKWMKEQGVDLIDCSSGALVHADINVFPGYQVSFAEKIREQA- 275 (337)
T ss_dssp HHHHHHHHHHCCSCEEEEEECCCCSTTSCCHHHHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHH-
T ss_pred HHHHHHHhhhhcccceEEecccccccCccchhhhHHHHHHHHHcCCcccccccccccccccccCCcccHHHHHHHHHhc-
Confidence 45799999999999999976 233 3467889999999999754322111 111 2334455666666
Q ss_pred CCCcEEEecCCCCHHHHHHHHHcC-CCEEEEchHHHH
Q 019244 253 GRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 288 (344)
Q Consensus 253 ~~~~via~GGIr~g~dv~kalalG-Ad~V~ig~~~l~ 288 (344)
++||++.|+|.+++++.++|+-| ||+|++||+++-
T Consensus 276 -~~pvi~~G~i~~~~~ae~~l~~g~~D~V~~gR~~ia 311 (337)
T d1z41a1 276 -DMATGAVGMITDGSMAEEILQNGRADLIFIGRELLR 311 (337)
T ss_dssp -CCEEEECSSCCSHHHHHHHHHTTSCSEEEECHHHHH
T ss_pred -CceEEEeCCcCCHHHHHHHHHCCCcceehhhHHHHh
Confidence 79999999999999999999999 999999999985
|
| >d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Hypothetical protein HI0047 species: Haemophilus influenzae [TaxId: 727]
Probab=98.33 E-value=2.6e-06 Score=73.63 Aligned_cols=177 Identities=16% Similarity=0.156 Sum_probs=108.5
Q ss_pred HHHHHHHcCCcc--ccCCHHHHHHHHHHHHHcCCcEEEeccCCccccccHHHHHhhcCCCC-cccccccccccccccccc
Q 019244 93 TARAASAAGTIM--VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP-FLTLKNFQGLDLGKMDEA 169 (344)
Q Consensus 93 lA~aA~~~g~~~--~~~d~~~~~~~i~~a~~ag~~~l~~tvd~~~~g~r~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~ 169 (344)
+.+.-.+.++.- -..|.+....+++.+.++|++.+.+|..+|..-.-...++..+ |. -++...+ +..+.....
T Consensus 7 ~~~~l~~~~iipvlr~~~~~~~~~~~~al~~~Gi~~iEitl~~~~a~~~I~~l~~~~--p~~~vGaGTV--~~~~~~~~a 82 (212)
T d1vhca_ 7 IIEKLRELKIVPVIALDNADDILPLADTLAKNGLSVAEITFRSEAAADAIRLLRANR--PDFLIAAGTV--LTAEQVVLA 82 (212)
T ss_dssp HHHHHHHHCEEEEECCSSGGGHHHHHHHHHHTTCCEEEEETTSTTHHHHHHHHHHHC--TTCEEEEESC--CSHHHHHHH
T ss_pred HHHHHHHCCEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHhcC--CCceEeeeec--ccHHHHHHH
Confidence 333444455433 2346666777888888899999999999875433233333333 21 1111111 111010000
Q ss_pred cchhhHHHHhhcCCCCCcHHHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHH
Q 019244 170 NDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVK 249 (344)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~ 249 (344)
...+.+..++ |.++-+.++..++ .++|++ -+++|+.++..+.++|++.+.++-.+. -+|+ ..++.+..
T Consensus 83 ~~aGa~FivS----P~~~~~v~~~a~~-~~i~~i-PGv~TpsEi~~A~~~G~~~vK~FPA~~---~gG~---~~lkal~~ 150 (212)
T d1vhca_ 83 KSSGADFVVT----PGLNPKIVKLCQD-LNFPIT-PGVNNPMAIEIALEMGISAVKFFPAEA---SGGV---KMIKALLG 150 (212)
T ss_dssp HHHTCSEEEC----SSCCHHHHHHHHH-TTCCEE-CEECSHHHHHHHHHTTCCEEEETTTTT---TTHH---HHHHHHHT
T ss_pred HhhCCcEEEC----CCCCHHHHHHHHh-cCCCcc-CCcCCHHHHHHHHHCCCCEEEEccccc---cchH---HHHHHHhc
Confidence 1111122222 3344555665555 488876 568999999999999999999975321 1233 33444443
Q ss_pred HccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHH
Q 019244 250 ATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 287 (344)
Q Consensus 250 ~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l 287 (344)
.+ .+++++.+|||. .+++-++|++|+.++++|+.++
T Consensus 151 p~-p~~~~~ptGGV~-~~N~~~yl~~g~v~~~~Gs~l~ 186 (212)
T d1vhca_ 151 PY-AQLQIMPTGGIG-LHNIRDYLAIPNIVACGGSWFV 186 (212)
T ss_dssp TT-TTCEEEEBSSCC-TTTHHHHHTSTTBCCEEECGGG
T ss_pred cc-cCCeEEecCCCC-HHHHHHHHhCCCEEEEEChhhC
Confidence 44 379999999996 6899999999999999999876
|
| >d1vcva1 c.1.10.1 (A:1-226) Deoxyribose-phosphate aldolase DeoC {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=98.30 E-value=1.2e-06 Score=76.50 Aligned_cols=171 Identities=18% Similarity=0.124 Sum_probs=97.6
Q ss_pred CHHHHHHHHHHHHHcCCcEEEeccCCccccccH-HHHHh--hcCCCCccccccccccc-------ccccccccchhhHHH
Q 019244 108 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRRE-ADIKN--RFTLPPFLTLKNFQGLD-------LGKMDEANDSGLAAY 177 (344)
Q Consensus 108 d~~~~~~~i~~a~~ag~~~l~~tvd~~~~g~r~-~~~~~--~~~~~~g~~~~~~~~~~-------~~~~~~~~~~~~~~~ 177 (344)
+++.++.+++++.+.++.++++.+....+.++. .+.+. -.+||.|.........+ ++++.. ..| ...+
T Consensus 15 t~~~i~~~~~~A~~~~~aavcV~P~~v~~a~~~l~~~~v~tVigFP~G~~~~~~k~~e~~a~~~GAdEID~-Vin-~~~~ 92 (226)
T d1vcva1 15 TVDEAVAGARKAEELGVAAYCVNPIYAPVVRPLLRKVKLCVVADFPFGALPTASRIALVSRLAEVADEIDV-VAP-IGLV 92 (226)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEECGGGHHHHGGGCSSSEEEEEESTTTCCSCHHHHHHHHHHHTTTCSEEEE-ECC-HHHH
T ss_pred CHHHHHHHHHHHHHhCCeEEEECHHHHHHHHHhccCCceEEEEecCcccCcHHHHHHHHHHHHcCCCeeEE-Eec-HHHH
Confidence 566677888888888888888776533222211 01110 12356665432211100 011110 000 0111
Q ss_pred HhhcCCCCC--cHHHHHHHHHhcCCcEEEEee-----cCHHH----HHHHHHcCCcEEEEccC-CCC--------CCCCc
Q 019244 178 VAGQIDRSL--SWKDVKWLQTITKLPILVKGV-----LTAED----ARIAVQAGAAGIIVSNH-GAR--------QLDYV 237 (344)
Q Consensus 178 ~~~~~~~~~--~~~~i~~i~~~~~~PvivK~v-----~~~~~----a~~~~~~G~d~I~v~~~-gG~--------~~~~g 237 (344)
.++++ ..++|..+++..+ +.++|.+ ++.++ ++.+.++|+|+|..|+. ++. .....
T Consensus 93 ----~~g~~~~v~~ei~~v~~~~~-~~~lKVIlEt~~L~~~ei~~~~~~~~~aGadFIKTSTGf~~~g~~~~~~~~~~at 167 (226)
T d1vcva1 93 ----KSRRWAEVRRDLISVVGAAG-GRVVKVITEEPYLRDEERYTLYDIIAEAGAHFIKSSTGFAEEAYAARQGNPVHST 167 (226)
T ss_dssp ----HTTCHHHHHHHHHHHHHHTT-TSEEEEECCGGGCCHHHHHHHHHHHHHHTCSEEECCCSCCCHHHHHHTTCCSSCC
T ss_pred ----hCCCHHHHHHHHHHHHhccC-CCeEEEEecccccCHHHHHHHHHHHHHcCcceeeecccccCCcccccccCcccCc
Confidence 11222 1235777777664 5567887 44443 45677999999999863 211 11122
Q ss_pred hhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHc-------CCCEEEEchH
Q 019244 238 PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL-------GASGIFIGRP 285 (344)
Q Consensus 238 ~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalal-------GAd~V~ig~~ 285 (344)
+.....+.++.+..++++.|-++|||||.+++.+.+.+ ||.-++..+.
T Consensus 168 ~~~~~~~~~~~~~~g~~vgiKasGGIrt~~~A~~~i~a~~~~~~~ga~RiGtSs~ 222 (226)
T d1vcva1 168 PERAAAIARYIKEKGYRLGVKMAGGIRTREQAKAIVDAIGWGEDPARVRLGTSTP 222 (226)
T ss_dssp HHHHHHHHHHHHHHTCCCEEEEESSCCSHHHHHHHHHHHCSCSCTTTEEEEESCG
T ss_pred HHHHHHHHHHHHHhCCceeEECcCCCCCHHHHHHHHHhhhcCCCCCCEEEecCCh
Confidence 34455666666666678999999999999999999987 8877776654
|
| >d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Escherichia coli [TaxId: 562]
Probab=98.24 E-value=4.2e-06 Score=72.26 Aligned_cols=165 Identities=15% Similarity=0.177 Sum_probs=104.7
Q ss_pred cCCHHHHHHHHHHHHHcCCcEEEeccCCccccccHHHHHhhcCCCC-cccccccccccccccccccchhhHHHHhhcCCC
Q 019244 106 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP-FLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDR 184 (344)
Q Consensus 106 ~~d~~~~~~~i~~a~~ag~~~l~~tvd~~~~g~r~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (344)
..|.+....+++...++|++.+.+|..+|..-.....++..| |. -++...+ +..+........+.+..++ +
T Consensus 23 ~~~~~~a~~~~~al~~~Gi~~iEitl~tp~a~~~I~~l~~~~--p~~~vGaGTV--~~~~~~~~a~~aGa~FivS----P 94 (213)
T d1wbha1 23 VKKLEHAVPMAKALVAGGVRVLNVTLRTECAVDAIRAIAKEV--PEAIVGAGTV--LNPQQLAEVTEAGAQFAIS----P 94 (213)
T ss_dssp CSSGGGHHHHHHHHHHTTCCEEEEESCSTTHHHHHHHHHHHC--TTSEEEEESC--CSHHHHHHHHHHTCSCEEE----S
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHHC--CCCeeecccc--ccHHHHHHHHHCCCcEEEC----C
Confidence 456777778888888999999999998886433334444443 32 1111111 1100000001111112222 3
Q ss_pred CCcHHHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCC
Q 019244 185 SLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 264 (344)
Q Consensus 185 ~~~~~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr 264 (344)
.++-+.++..++ .++|++ -++.|+.++..+.++|++.++++-..- .| ....+..+...+ .+++++.+|||.
T Consensus 95 ~~~~~v~~~a~~-~~i~~i-PGv~TpsEi~~A~~~G~~~vKlFPA~~----~G--g~~~lkal~~p~-p~~~~~ptGGV~ 165 (213)
T d1wbha1 95 GLTEPLLKAATE-GTIPLI-PGISTVSELMLGMDYGLKEFKFFPAEA----NG--GVKALQAIAGPF-SQVRFCPTGGIS 165 (213)
T ss_dssp SCCHHHHHHHHH-SSSCEE-EEESSHHHHHHHHHTTCCEEEETTTTT----TT--HHHHHHHHHTTC-TTCEEEEBSSCC
T ss_pred CCCHHHHHHHHh-cCCCcc-CCcCCHHHHHHHHHCCCCEEEeccchh----cC--hHHHHHHhcCcc-cCCceeeeCCCC
Confidence 345555666555 478876 578999999999999999999974321 11 233444444444 479999999998
Q ss_pred CHHHHHHHHHcCCCEEEEchHHHH
Q 019244 265 RGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 265 ~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
..++.+++.+|+.++++|+.++.
T Consensus 166 -~~n~~~yl~~g~v~~~~Gs~l~~ 188 (213)
T d1wbha1 166 -PANYRDYLALKSVLCIGGSWLVP 188 (213)
T ss_dssp -TTTHHHHHTSTTBSCEEEGGGSC
T ss_pred -HHHHHHHHhCCCEEEEEChhhCC
Confidence 68999999999999999987753
|
| >d1xm3a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: ThiG-like family: ThiG-like domain: Thiazole biosynthesis protein ThiG species: Bacillus subtilis [TaxId: 1423]
Probab=98.22 E-value=3.3e-06 Score=73.31 Aligned_cols=86 Identities=20% Similarity=0.257 Sum_probs=68.0
Q ss_pred CCcEEEEeecCHHHHHHHHHcCCcEEEEccCC-CCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCC
Q 019244 199 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHG-ARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGA 277 (344)
Q Consensus 199 ~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~g-G~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGA 277 (344)
+.-|..=...++..++++.++|+..|---+.. |+ ..|..+.+.|..+++.. ++|||+|.||.++.|+.+++.+||
T Consensus 125 GF~VlpY~~~D~v~ak~Le~~Gc~avMPlgsPIGS--g~Gl~n~~~l~~i~~~~--~vPvIvDAGIG~pSdAa~AMElG~ 200 (251)
T d1xm3a_ 125 GFIVLPYTSDDVVLARKLEELGVHAIMPGASPIGS--GQGILNPLNLSFIIEQA--KVPVIVDAGIGSPKDAAYAMELGA 200 (251)
T ss_dssp TCCEEEEECSCHHHHHHHHHHTCSCBEECSSSTTC--CCCCSCHHHHHHHHHHC--SSCBEEESCCCSHHHHHHHHHTTC
T ss_pred CcEEEEecCCCHHHHHHHHHcCChhHHHhhhhhhc--CCCcCChHHHHHHHhcC--CccEEEecCCCCHHHHHHHHHccC
Confidence 44455444578899999999999998764421 21 13566778888888765 899999999999999999999999
Q ss_pred CEEEEchHHHH
Q 019244 278 SGIFIGRPVVY 288 (344)
Q Consensus 278 d~V~ig~~~l~ 288 (344)
|+|.+-+++-.
T Consensus 201 daVLvNTAIA~ 211 (251)
T d1xm3a_ 201 DGVLLNTAVSG 211 (251)
T ss_dssp SEEEESHHHHT
T ss_pred CEEEechhhhc
Confidence 99999998743
|
| >d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermus thermophilus [TaxId: 274]
Probab=98.22 E-value=6.8e-06 Score=72.75 Aligned_cols=101 Identities=25% Similarity=0.311 Sum_probs=78.9
Q ss_pred cHHHHHHHHHhcCCcEEEEe-ecCHHHHHHHHHcCCcEEEEccC------------------------------------
Q 019244 187 SWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSNH------------------------------------ 229 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~-v~~~~~a~~~~~~G~d~I~v~~~------------------------------------ 229 (344)
.++.++.+.+.+.+|+.+.+ +.+.++++.+.++|++.|+++..
T Consensus 62 ~~~~i~~i~~~~~~pi~vgGGIrs~e~~~~ll~~Ga~kVii~s~~~~n~~~i~~~~~~~G~q~iv~~id~~~~~~~~~~~ 141 (251)
T d1ka9f_ 62 LLDVVARVAERVFIPLTVGGGVRSLEDARKLLLSGADKVSVNSAAVRRPELIRELADHFGAQAVVLAIDARWRGDFPEVH 141 (251)
T ss_dssp HHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHCTHHHHHHHHHHCGGGEEEEEEEEEETTEEEEE
T ss_pred HHHHHHHHHhccCcchheeccccCHHHHHHHHHcCCCEEEECchhhhCHHHHHHHHHhhcccccccccchhhcccceEEE
Confidence 34568888888899998876 47899999999999999988521
Q ss_pred --CCCC---------------------------CCC--chhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCC
Q 019244 230 --GARQ---------------------------LDY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGAS 278 (344)
Q Consensus 230 --gG~~---------------------------~~~--g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd 278 (344)
|++. .|+ ..+.++.+.++.+.. ++|+|++||+++..|+.+++..|++
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~g~~eii~tdi~~dG~~~G~d~~l~~~i~~~~--~~pii~~GGv~~~~dl~~l~~~g~~ 219 (251)
T d1ka9f_ 142 VAGGRVPTGLHAVEWAVKGVELGAGEILLTSMDRDGTKEGYDLRLTRMVAEAV--GVPVIASGGAGRMEHFLEAFQAGAE 219 (251)
T ss_dssp ETTTTEEEEEEHHHHHHHHHHHTCCEEEEEETTTTTTCSCCCHHHHHHHHHHC--SSCEEEESCCCSHHHHHHHHHTTCS
T ss_pred eccceecCCccHHHHHHHHHhcCCCEEEEEeecccCccCCcchhHHHHHHhhc--ceeEEEecCCCCHHHHHHHHHCCCC
Confidence 1110 011 124567777777665 7999999999999999999999999
Q ss_pred EEEEchHHHHH
Q 019244 279 GIFIGRPVVYS 289 (344)
Q Consensus 279 ~V~ig~~~l~~ 289 (344)
+|.+|+.|+++
T Consensus 220 gviig~al~~g 230 (251)
T d1ka9f_ 220 AALAASVFHFG 230 (251)
T ss_dssp EEEESHHHHTT
T ss_pred EEEEhHHHHcC
Confidence 99999998763
|
| >d1a53a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=98.22 E-value=7e-06 Score=72.28 Aligned_cols=103 Identities=15% Similarity=0.307 Sum_probs=72.9
Q ss_pred cHHHHHHHHHhcCCcEEEEee-cCHHHHHHHHHcCCcEEEEccC--C--------------C------------------
Q 019244 187 SWKDVKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSNH--G--------------A------------------ 231 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v-~~~~~a~~~~~~G~d~I~v~~~--g--------------G------------------ 231 (344)
+++++..+++.+++||+.|.- .++.+...+..+|||+|.+.-. . |
T Consensus 91 s~~dl~~v~~~~~~PiLrKDFIid~~QI~ea~~~GADaiLLI~~~L~~~~l~~l~~~a~~lgl~~LvEvh~~~El~~a~~ 170 (247)
T d1a53a_ 91 SYETLRKIASSVSIPILMKDFIVKESQIDDAYNLGADTVLLIVKILTERELESLLEYARSYGMEPLIEINDENDLDIALR 170 (247)
T ss_dssp CHHHHHHHHHHCCSCEEEESCCCSHHHHHHHHHHTCSEEEEEGGGSCHHHHHHHHHHHHTTTCCCEEEECSHHHHHHHHH
T ss_pred chHHHHHHHhccccceeecccccChHHHHHHHHhhcchhhhhhhhccHHHHHHHHHHHHHHhhhHHhhcCCHHHHHHHHh
Confidence 567777777777777777763 5667777777777777766311 0 0
Q ss_pred ----------CCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHH
Q 019244 232 ----------RQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 289 (344)
Q Consensus 232 ----------~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~ 289 (344)
|.+..-....+...++...++.+..+|+.|||.+..|+.+...+|||+|.||+.+|..
T Consensus 171 ~~a~iIGINnRnL~t~~vd~~~~~~L~~~ip~~~~~IaESGI~t~~dv~~l~~~G~davLIGeaLmk~ 238 (247)
T d1a53a_ 171 IGARFIGINSRDLETLEINKENQRKLISMIPSNVVKVAESGISERNEIEELRKLGVNAFLIGSSLMRN 238 (247)
T ss_dssp TTCSEEEEESBCTTTCCBCHHHHHHHHHHSCTTSEEEEESCCCCHHHHHHHHHTTCCEEEECHHHHHC
T ss_pred CCCCeEeeeccChhhhhhhhhHHHHHHhhCCCCCeEEEecCCCCHHHHHHHHHCCCCEEEECHHHcCC
Confidence 0111111233444455666777899999999999999999999999999999999973
|
| >d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Salmonella typhimurium [TaxId: 90371]
Probab=98.18 E-value=6.2e-05 Score=66.98 Aligned_cols=123 Identities=14% Similarity=0.130 Sum_probs=80.2
Q ss_pred cHHHHHHHHHhc-CCcEEEEeecC-------HHHHHHHHHcCCcEEEEccCCCC------------------------C-
Q 019244 187 SWKDVKWLQTIT-KLPILVKGVLT-------AEDARIAVQAGAAGIIVSNHGAR------------------------Q- 233 (344)
Q Consensus 187 ~~~~i~~i~~~~-~~PvivK~v~~-------~~~a~~~~~~G~d~I~v~~~gG~------------------------~- 233 (344)
.++.++.+|+.. ..|+++=+-.+ .+-++.+.++|+|++++-.-... .
T Consensus 81 ~~~~~~~~r~~~~~~pivlm~Y~N~i~~~G~~~f~~~~~~~Gv~GliipDlP~ee~~~~~~~~~~~~l~~I~lvaPtt~~ 160 (267)
T d1qopa_ 81 CFEMLAIIREKHPTIPIGLLMYANLVFNNGIDAFYARCEQVGVDSVLVADVPVEESAPFRQAALRHNIAPIFICPPNADD 160 (267)
T ss_dssp HHHHHHHHHHHCSSSCEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEETTCCGGGCHHHHHHHHHTTCEEECEECTTCCH
T ss_pred hhhhhhhhcccccccceEEEeeccchhhcCchHHHHHHHhcCCCceeccchhhhhhHHHHHhhhccCceEEEEecccccH
Confidence 456788888875 68887654211 23378888999999988421100 0
Q ss_pred ------------------CC--Cc------hhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHH
Q 019244 234 ------------------LD--YV------PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 287 (344)
Q Consensus 234 ------------------~~--~g------~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l 287 (344)
.. .| ....+.+..+++.. ++||++--||++++|+.+++..|||+|.+|++++
T Consensus 161 ~Ri~~i~~~a~gFiY~vs~~GvTG~~~~~~~~~~~~i~~ik~~t--~~Pv~vGFGI~~~e~v~~~~~~~ADGvIVGSAiv 238 (267)
T d1qopa_ 161 DLLRQVASYGRGYTYLLSRSGVTGAENRGALPLHHLIEKLKEYH--AAPALQGFGISSPEQVSAAVRAGAAGAISGSAIV 238 (267)
T ss_dssp HHHHHHHHHCCSCEEEESSSSCCCSSSCC--CCHHHHHHHHHTT--CCCEEEESSCCSHHHHHHHHHTTCSEEEECHHHH
T ss_pred HHHHHHHhhCchhhhhhcccccCCcccccchhHHHHHHHHhhhc--cCCceeecccCCHHHHHHHHhcCCCEEEECHHHH
Confidence 00 11 11234566666544 8999999999999999999999999999999999
Q ss_pred HHhhhcC--hHHHHHHHHHHHHHHHH
Q 019244 288 YSLAAEG--EKGVRRVLEMLREEFEL 311 (344)
Q Consensus 288 ~~~~~~G--~~~v~~~l~~l~~el~~ 311 (344)
.-+.... .+...+.+..+.++|+.
T Consensus 239 k~i~~~~~~~~~~~~~i~~~v~~lk~ 264 (267)
T d1qopa_ 239 KIIEKNLASPKQMLAELRSFVSAMKA 264 (267)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccCHHHHHHHHHHHHHHHHH
Confidence 8664321 12223344455555543
|
| >d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermotoga maritima [TaxId: 2336]
Probab=98.17 E-value=6.7e-06 Score=72.88 Aligned_cols=101 Identities=18% Similarity=0.229 Sum_probs=76.2
Q ss_pred cHHHHHHHHHhcCCcEEEEee-cCHHHHHHHHHcCCcEEEEccC---------------CC-------------------
Q 019244 187 SWKDVKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSNH---------------GA------------------- 231 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v-~~~~~a~~~~~~G~d~I~v~~~---------------gG------------------- 231 (344)
.++.++.+.+.+++|+.+.+. .+.++++.+.++|++.|+++.. |.
T Consensus 62 ~~~~i~~i~~~~~~pi~vgGGIr~~e~i~~~l~~Ga~kviigs~~~~n~~~l~~~~~~~G~~~iv~~id~~~~~~~~~~~ 141 (253)
T d1thfd_ 62 MLELVEKVAEQIDIPFTVGGGIHDFETASELILRGADKVSINTAAVENPSLITQIAQTFGSQAVVVAIDAKRVDGEFMVF 141 (253)
T ss_dssp HHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHTTCSEEEESHHHHHCTHHHHHHHHHHCGGGEEEEEEEEEETTEEEEE
T ss_pred HHHHHHHHHhccCccceeecccccchhhhhHHhcCCCEEEEChHHhhChHHHHHHHHHcCCeeEEEeeeecccCCceeee
Confidence 345788888888899988774 7889999999999998888521 11
Q ss_pred ----CC---------------------------CCC--chhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCC
Q 019244 232 ----RQ---------------------------LDY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGAS 278 (344)
Q Consensus 232 ----~~---------------------------~~~--g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd 278 (344)
+. .|+ ..+..+.+.++.+.. ++|++++||+++..|+.+++.+|++
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~g~~eii~tdI~~dGt~~G~d~~ll~~i~~~~--~~pvi~~GGv~s~~di~~l~~~g~~ 219 (253)
T d1thfd_ 142 TYSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLT--TLPIIASGGAGKMEHFLEAFLAGAD 219 (253)
T ss_dssp ETTTTEEEEEEHHHHHHHHHHTTCSEEEEEETTTTTSCSCCCHHHHHHHGGGC--CSCEEEESCCCSHHHHHHHHHTTCS
T ss_pred eeecccccchhHHHHHHHHHhccCCEEEEEEecccCccCCccccccccccccc--cceEEEecCCCCHHHHHHHHHCCCC
Confidence 00 011 123556666665443 7999999999999999999999999
Q ss_pred EEEEchHHHHH
Q 019244 279 GIFIGRPVVYS 289 (344)
Q Consensus 279 ~V~ig~~~l~~ 289 (344)
+|.+|+.|+++
T Consensus 220 gvivgsal~~~ 230 (253)
T d1thfd_ 220 AALAASVFHFR 230 (253)
T ss_dssp EEEESHHHHTT
T ss_pred EEEEchHHHcC
Confidence 99999998763
|
| >d1djqa1 c.1.4.1 (A:1-340) Trimethylamine dehydrogenase, N-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Trimethylamine dehydrogenase, N-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=98.17 E-value=3.7e-06 Score=77.85 Aligned_cols=99 Identities=12% Similarity=0.039 Sum_probs=71.3
Q ss_pred HHHHHHHHHhc--CCcEEEEeec---------C----HHHHHHHHHcCCcEEEEccCCCCC----CC-----CchhhHHH
Q 019244 188 WKDVKWLQTIT--KLPILVKGVL---------T----AEDARIAVQAGAAGIIVSNHGARQ----LD-----YVPATIMA 243 (344)
Q Consensus 188 ~~~i~~i~~~~--~~PvivK~v~---------~----~~~a~~~~~~G~d~I~v~~~gG~~----~~-----~g~~~~~~ 243 (344)
.+.++.||+.+ +.||.+|... . ...+..+.+.|+|.+.++...-.+ .. .....+..
T Consensus 203 ~EIi~aIr~~vg~~~~i~~R~s~~~~~~~~~~~~e~~~~~~~~l~~~~vd~~~vs~g~~~~~~~~~~~~~~~~~~~~~~~ 282 (340)
T d1djqa1 203 LETLEKVKHAVGSDCAIATRFGVDTVYGPGQIEAEVDGQKFVEMADSLVDMWDITIGDIAEWGEDAGPSRFYQQGHTIPW 282 (340)
T ss_dssp HHHHHHHHHHHTTTSEEEEEEEEECSSCTTSCCTTTHHHHHHHHHTTTCSEEEEEESCSTTGGGTSCCTTTCCTTTTHHH
T ss_pred HHHHHHHHHHHhhhhhceeeccccccccCCCCchhhhHHHHHHHHhhccceeeeeecccccccccccccccCCccccHHH
Confidence 45789999998 4789999641 1 123567889999999997531110 00 01123344
Q ss_pred HHHHHHHccCCCcEEEecCCCCHHHHHHHHHcC-CCEEEEchHHHH
Q 019244 244 LEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 288 (344)
Q Consensus 244 l~~i~~~~~~~~~via~GGIr~g~dv~kalalG-Ad~V~ig~~~l~ 288 (344)
...+++.. ++|||+.|||++++++.++|+.| ||+|++||+++-
T Consensus 283 ~~~ik~~~--~~pVi~~G~i~~~~~a~~~l~~G~aDlV~~gR~~ia 326 (340)
T d1djqa1 283 VKLVKQVS--KKPVLGVGRYTDPEKMIEIVTKGYADIIGCARPSIA 326 (340)
T ss_dssp HHHHHTTC--SSCEEECSCCCCHHHHHHHHHTTSCSBEEESHHHHH
T ss_pred HHHHHHHc--CCeEEEECCCCCHHHHHHHHHCCCccchhhHHHHHH
Confidence 45555544 79999999999999999999999 999999999974
|
| >d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=98.14 E-value=1.2e-05 Score=71.27 Aligned_cols=101 Identities=28% Similarity=0.421 Sum_probs=77.8
Q ss_pred cHHHHHHHHHhcCCcEEEEee-cCHHHHHHHHHcCCcEEEEcc-------------------------------------
Q 019244 187 SWKDVKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSN------------------------------------- 228 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v-~~~~~a~~~~~~G~d~I~v~~------------------------------------- 228 (344)
.++.++.+.+...+|+.+.+. .+.++++.+.++|++.|++..
T Consensus 64 ~~~~i~~i~~~~~~pi~~gGGIr~~e~~~~ll~~G~~kVii~s~~~~~~~~~~~~~~~~G~q~iv~slD~~~~~~~~~v~ 143 (252)
T d1h5ya_ 64 FIDSVKRVAEAVSIPVLVGGGVRSLEDATTLFRAGADKVSVNTAAVRNPQLVALLAREFGSQSTVVAIDAKWNGEYYEVY 143 (252)
T ss_dssp HHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHHCTHHHHHHHHHHCGGGEEEEEEEEECSSSEEEE
T ss_pred HHHHHHHHHhhcCCcceeecccchhhhhhhHhhcCCcEEEecccccCCcchHHHHHHhcCCCcEEEEEEEEEcCCcEEEE
Confidence 356688888888899988774 688999999999999888841
Q ss_pred -CCCCC---------------------------CCC--chhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCC
Q 019244 229 -HGARQ---------------------------LDY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGAS 278 (344)
Q Consensus 229 -~gG~~---------------------------~~~--g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd 278 (344)
+|++. .|+ .-+.++.+.++.+.. ++|++++||+++.+|+.++..+|++
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~g~~eii~tdI~~dG~~~G~d~~~~~~i~~~~--~~pii~~GGv~~~~di~~l~~~g~~ 221 (252)
T d1h5ya_ 144 VKGGREATGLDAVKWAKEVEELGAGEILLTSIDRDGTGLGYDVELIRRVADSV--RIPVIASGGAGRVEHFYEAAAAGAD 221 (252)
T ss_dssp ETTTTEEEEEEHHHHHHHHHHHTCSEEEEEETTTTTTCSCCCHHHHHHHHHHC--SSCEEEESCCCSHHHHHHHHHTTCS
T ss_pred EeCCeEcCCCCHHHHHHHHHhcCCCEEEEEeecccCccCCcCHHHHHHHHHhc--CCCEEEecCCCCHHHHHHHHHCCCC
Confidence 11110 011 114567777777665 7999999999999999999999999
Q ss_pred EEEEchHHHHH
Q 019244 279 GIFIGRPVVYS 289 (344)
Q Consensus 279 ~V~ig~~~l~~ 289 (344)
+|.+|+.|+++
T Consensus 222 gv~~gs~l~~~ 232 (252)
T d1h5ya_ 222 AVLAASLFHFR 232 (252)
T ss_dssp EEEESHHHHTT
T ss_pred EEEEhhHHHcC
Confidence 99999999874
|
| >d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]
Probab=98.12 E-value=9e-06 Score=74.48 Aligned_cols=49 Identities=18% Similarity=0.148 Sum_probs=42.9
Q ss_pred hhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHH-cCCCEEEEchHHHHH
Q 019244 239 ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA-LGASGIFIGRPVVYS 289 (344)
Q Consensus 239 ~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kala-lGAd~V~ig~~~l~~ 289 (344)
+.++.+.++.+.+ ++|||++||+.+..|+.+++. .|+++|.+|+.|.+.
T Consensus 251 ~D~el~~~i~~~~--~iPiIasGGi~s~~di~~ll~~~~v~gv~~gs~~~~~ 300 (323)
T d1jvna1 251 YDLELIEHVKDAV--KIPVIASSGAGVPEHFEEAFLKTRADACLGAGMFHRG 300 (323)
T ss_dssp CCHHHHHHHHHHC--SSCEEECSCCCSHHHHHHHHHHSCCSEEEESHHHHTT
T ss_pred cchhHHHHHHHhC--CCCEEEECCCCCHHHHHHHHHhCCCeEEEEhhHHHcC
Confidence 5677888887776 799999999999999999987 479999999999873
|
| >d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 2,4-dienoyl-CoA reductase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.11 E-value=6.6e-06 Score=75.82 Aligned_cols=99 Identities=16% Similarity=0.092 Sum_probs=70.7
Q ss_pred HHHHHHHHHhcC--CcEEEEee--------cCHHH----HHHHHHcCCcEEEEccCCCC--CCCCc---h--hhHHHHHH
Q 019244 188 WKDVKWLQTITK--LPILVKGV--------LTAED----ARIAVQAGAAGIIVSNHGAR--QLDYV---P--ATIMALEE 246 (344)
Q Consensus 188 ~~~i~~i~~~~~--~PvivK~v--------~~~~~----a~~~~~~G~d~I~v~~~gG~--~~~~g---~--~~~~~l~~ 246 (344)
.+.|+.||+.++ .||.+|.. .+.++ ++.+.++|+|.+.++..+.. ..... + ........
T Consensus 195 ~Eii~air~~vg~d~~v~~R~s~~d~~~~g~~~~~~~~~~~~l~~~g~d~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 274 (330)
T d1ps9a1 195 VEVVRAVRERVGNDFIIIYRLSMLDLVEDGGTFAETVELAQAIEAAGATIINTGIGWHEARIPTIATPVPRGAFSWVTRK 274 (330)
T ss_dssp HHHHHHHHHHHCSSSEEEEEEEEECCSTTCCCHHHHHHHHHHHHHHTCSEEEEEECBTTCSSCSSSTTSCTTTTHHHHHH
T ss_pred HHHHHHHHHHcCCCceeEecccccccccCCCCHHHHHHHHHHHHHhhhhhhhcccccccccccccCCCCcchhHHHHHHH
Confidence 457899999884 77888875 23433 67788899999998753221 11111 0 11223344
Q ss_pred HHHHccCCCcEEEecCCCCHHHHHHHHHcC-CCEEEEchHHHH
Q 019244 247 VVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 288 (344)
Q Consensus 247 i~~~~~~~~~via~GGIr~g~dv~kalalG-Ad~V~ig~~~l~ 288 (344)
+++.+ ++||++.|+|.+++++.++|+-| ||+|++||+++-
T Consensus 275 ik~~~--~~pvi~~G~i~~~~~ae~~l~~g~~D~V~~gR~~ia 315 (330)
T d1ps9a1 275 LKGHV--SLPLVTTNRINDPQVADDILSRGDADMVSMARPFLA 315 (330)
T ss_dssp HTTSC--SSCEEECSSCCSHHHHHHHHHTTSCSEEEESTHHHH
T ss_pred HHhhC--CceEEEeCCCCCHHHHHHHHHCCCcchhHhhHHHHh
Confidence 44444 79999999999999999999999 999999999974
|
| >d1vc4a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Thermus thermophilus [TaxId: 274]
Probab=98.10 E-value=4.9e-05 Score=66.95 Aligned_cols=160 Identities=21% Similarity=0.179 Sum_probs=96.2
Q ss_pred HHHHHHHcCCcEEEeccCCccccccHHHHHh---hcCCCCcccccccccccccccccccchhhHHHHhhcCCCC--C-cH
Q 019244 115 LVRRAERAGFKAIALTVDTPRLGRREADIKN---RFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS--L-SW 188 (344)
Q Consensus 115 ~i~~a~~ag~~~l~~tvd~~~~g~r~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~ 188 (344)
+.+..+++|+.++.+-.|...|+-...+++. ...+|. +..+. .....|-+.......+ + -.
T Consensus 70 ~A~~y~~~GA~aiSVLTe~~~F~Gs~~dl~~v~~~~~iPv---------LrKDF----Iid~~QI~ea~~~GADaVLLIa 136 (254)
T d1vc4a_ 70 AALAYARGGARAVSVLTEPHRFGGSLLDLKRVREAVDLPL---------LRKDF----VVDPFMLEEARAFGASAALLIV 136 (254)
T ss_dssp HHHHHHHTTCSEEEEECCCSSSCCCHHHHHHHHHHCCSCE---------EEESC----CCSHHHHHHHHHTTCSEEEEEH
T ss_pred HHHHHHhcCCceEEEEcCcccccccHHHHHHHHHHcCCCc---------ccCCc----cccHHHHHHHHhccchHHHHHH
Confidence 4456677899998888887777766555542 222221 00011 1112222111111122 2 11
Q ss_pred -------HHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEec
Q 019244 189 -------KDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 261 (344)
Q Consensus 189 -------~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~G 261 (344)
..+-.....+++-++|- +-+.+++.++.++|++.|-|-|.-=+.+.....+...|.++....+.++.+|+.+
T Consensus 137 all~~~l~~l~~~A~~lgl~~LVE-vh~~~El~~a~~~~a~iIGINnRdL~t~~vd~~~~~~l~~~i~~~~~~~i~IsES 215 (254)
T d1vc4a_ 137 ALLGELTGAYLEEARRLGLEALVE-VHTERELEIALEAGAEVLGINNRDLATLHINLETAPRLGRLARKRGFGGVLVAES 215 (254)
T ss_dssp HHHGGGHHHHHHHHHHHTCEEEEE-ECSHHHHHHHHHHTCSEEEEESBCTTTCCBCTTHHHHHHHHHHHTTCCSEEEEES
T ss_pred HHHHHHHHHHHHHHHHhCCceEEE-eccHHHHhhhhcCCCCEEEEeccchhhhhcchHHHHHhhhcccccCCCCEEEEcc
Confidence 12223334457776664 6788999999999999888876433333333444444555444444467899999
Q ss_pred CCCCHHHHHHHHHcCCCEEEEchHHHHH
Q 019244 262 GVRRGTDVFKALALGASGIFIGRPVVYS 289 (344)
Q Consensus 262 GIr~g~dv~kalalGAd~V~ig~~~l~~ 289 (344)
||.+..|+ +.+..|+|+|.||..+|.+
T Consensus 216 GI~~~~dv-~~l~~g~davLIGesLm~~ 242 (254)
T d1vc4a_ 216 GYSRKEEL-KALEGLFDAVLIGTSLMRA 242 (254)
T ss_dssp CCCSHHHH-HTTTTTCSEEEECHHHHTS
T ss_pred CCCCHHHH-HHHHcCCCEEEEChhhcCC
Confidence 99999997 5567899999999999963
|
| >d1wv2a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: ThiG-like family: ThiG-like domain: Thiazole biosynthesis protein ThiG species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.03 E-value=1.4e-05 Score=69.91 Aligned_cols=78 Identities=17% Similarity=0.259 Sum_probs=62.2
Q ss_pred ecCHHHHHHHHHcCCcEEEEccCC-CCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchH
Q 019244 207 VLTAEDARIAVQAGAAGIIVSNHG-ARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 285 (344)
Q Consensus 207 v~~~~~a~~~~~~G~d~I~v~~~g-G~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~ 285 (344)
..++..++++.+.|+..+.--+.. |+ ..|..+.+.+..+.+.. ++|||+++||.+++|+.+++.||||+|.+.+.
T Consensus 135 ~~D~v~ak~le~~Gc~~vMplgsPIGs--g~Gi~n~~~l~~i~~~~--~vpvivdAGIg~psdaa~AMElG~dgVLvnsa 210 (243)
T d1wv2a_ 135 SDDPIIARQLAEIGCIAVMPLAGLIGS--GLGICNPYNLRIILEEA--KVPVLVDAGVGTASDAAIAMELGCEAVLMNTA 210 (243)
T ss_dssp CSCHHHHHHHHHSCCSEEEECSSSTTC--CCCCSCHHHHHHHHHHC--SSCBEEESCCCSHHHHHHHHHHTCSEEEESHH
T ss_pred CCCHHHHhHHHHcCceeeeeccccccc--ccccccHHHHHhccccC--CcceEeecccCCHHHHHHHHHccCCEEEechH
Confidence 467788999999999998765532 22 12445556666666654 89999999999999999999999999999998
Q ss_pred HHH
Q 019244 286 VVY 288 (344)
Q Consensus 286 ~l~ 288 (344)
+..
T Consensus 211 Ia~ 213 (243)
T d1wv2a_ 211 IAH 213 (243)
T ss_dssp HHT
T ss_pred hhc
Confidence 865
|
| >d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Maize (Zea mays) [TaxId: 4577]
Probab=98.01 E-value=0.00027 Score=62.55 Aligned_cols=71 Identities=28% Similarity=0.336 Sum_probs=52.8
Q ss_pred HHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcC-hHHHHHHHHHHHHHHHHHH
Q 019244 241 IMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEG-EKGVRRVLEMLREEFELAM 313 (344)
Q Consensus 241 ~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G-~~~v~~~l~~l~~el~~~m 313 (344)
.+.+..+++.. ++||++--||++++|+.+....|||+|.+|++++.-+.... .+...+.++.+.++|+..+
T Consensus 189 ~~~i~~ik~~t--~~Pi~vGFGI~~~e~v~~~~~~gaDGvIVGSaiv~~i~~~~~~~~~~~~~~~~~~~lk~al 260 (261)
T d1rd5a_ 189 ESLIQEVKKVT--NKPVAVGFGISKPEHVKQIAQWGADGVIIGSAMVRQLGEAASPKQGLRRLEEYARGMKNAL 260 (261)
T ss_dssp HHHHHHHHHHC--SSCEEEESCCCSHHHHHHHHHTTCSEEEECHHHHHHHHSSSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhcc--CCCeEEEcCCCCHHHHHHHHhcCCCEEEECHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh
Confidence 45677777664 79999999999999999999999999999999998664322 1222344566666666554
|
| >d1vzwa1 c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Streptomyces coelicolor [TaxId: 1902]
Probab=98.01 E-value=2.5e-05 Score=68.41 Aligned_cols=101 Identities=18% Similarity=0.242 Sum_probs=78.1
Q ss_pred cHHHHHHHHHhcCCcEEEEee-cCHHHHHHHHHcCCcEEEEccC--------------CCCC------------------
Q 019244 187 SWKDVKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSNH--------------GARQ------------------ 233 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v-~~~~~a~~~~~~G~d~I~v~~~--------------gG~~------------------ 233 (344)
.++.++.+.+.+.+|+.+.+. .+.++++.+.+.|++.|++... .|.+
T Consensus 62 ~~~~i~~i~~~~~~pi~vGGGIrs~~~~~~ll~~Ga~kVvi~s~~~~~~~~~~~~~~~~g~~~vv~~d~~~~~~~~~g~~ 141 (239)
T d1vzwa1 62 NRALIAEVAQAMDIKVELSGGIRDDDTLAAALATGCTRVNLGTAALETPEWVAKVIAEHGDKIAVGLDVRGTTLRGRGWT 141 (239)
T ss_dssp CHHHHHHHHHHCSSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHHCHHHHHHHHHHHGGGEEEEEEEETTEECCSSSC
T ss_pred hHHHHHHHHhhcCcceEeecccccchhhhhhhccccccchhhHHhhhccccchhhhccCCceeeeeeccceeeecCccce
Confidence 567899999999999999875 7899999999999999998521 0000
Q ss_pred ---------------------------CCC--chhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHc---CCCEEE
Q 019244 234 ---------------------------LDY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL---GASGIF 281 (344)
Q Consensus 234 ---------------------------~~~--g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalal---GAd~V~ 281 (344)
.++ .-+.++.+..+.+.. ++|++++|||++..|+.+.-.+ |+++|.
T Consensus 142 ~~~~~~~~~~~~~~~~g~~eii~tdi~~dGt~~G~d~~l~~~i~~~~--~~pvi~sGGv~s~~Di~~l~~l~~~g~~gvi 219 (239)
T d1vzwa1 142 RDGGDLYETLDRLNKEGCARYVVTDIAKDGTLQGPNLELLKNVCAAT--DRPVVASGGVSSLDDLRAIAGLVPAGVEGAI 219 (239)
T ss_dssp CCCCBHHHHHHHHHHTTCCCEEEEEC-------CCCHHHHHHHHHTC--SSCEEEESCCCSHHHHHHHHTTGGGTEEEEE
T ss_pred eeccccchhhhhhhhccccEEEEEeecccceecCCcchhhhhhhhcc--CceEEEECCCCCHHHHHHHHhhhhCCccEee
Confidence 011 124556777776654 7999999999999999887665 999999
Q ss_pred EchHHHHH
Q 019244 282 IGRPVVYS 289 (344)
Q Consensus 282 ig~~~l~~ 289 (344)
+|++|+++
T Consensus 220 vg~al~~g 227 (239)
T d1vzwa1 220 VGKALYAK 227 (239)
T ss_dssp ECHHHHTT
T ss_pred EhHHHHCC
Confidence 99998764
|
| >d1i4na_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Thermotoga maritima [TaxId: 2336]
Probab=97.92 E-value=1.8e-05 Score=69.71 Aligned_cols=44 Identities=11% Similarity=0.252 Sum_probs=36.3
Q ss_pred HHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHH
Q 019244 245 EEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 289 (344)
Q Consensus 245 ~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~ 289 (344)
.++...++.+..+|+.+||++.+|+. .+..|+|+|.||+.+|.+
T Consensus 193 ~~L~~~ip~~~~~IaESGI~~~~d~~-~l~~G~davLIG~sLm~~ 236 (251)
T d1i4na_ 193 WELLPLVPDDTVVVAESGIKDPRELK-DLRGKVNAVLVGTSIMKA 236 (251)
T ss_dssp HHHGGGSCTTSEEEEESCCCCGGGHH-HHTTTCSEEEECHHHHHC
T ss_pred HHHHhhCCCCCEEEEcCCCCCHHHHH-HHHhCCCEEEEChHHhCC
Confidence 34445566688999999999999985 567899999999999974
|
| >d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=97.90 E-value=8.6e-05 Score=65.28 Aligned_cols=107 Identities=21% Similarity=0.251 Sum_probs=74.2
Q ss_pred cHHHHHHHHHhcCCcEEEEeecC------H-HHHHHHHHcCCcEEEEccCCC------------------------CC--
Q 019244 187 SWKDVKWLQTITKLPILVKGVLT------A-EDARIAVQAGAAGIIVSNHGA------------------------RQ-- 233 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v~~------~-~~a~~~~~~G~d~I~v~~~gG------------------------~~-- 233 (344)
.++.++++|+..++|+++=.=.+ . +-++.+.++|+|++++-.-.. +.
T Consensus 68 ~~~~~~~~r~~~~~pivlm~Y~N~i~~~G~~~f~~~~~~~Gv~GliipDLP~eE~~~~~~~~~~~gl~~I~lvaPtt~~~ 147 (248)
T d1geqa_ 68 AFWIVKEFRRHSSTPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVFHAKEFTEIAREEGIKTVFLAAPNTPDE 147 (248)
T ss_dssp HHHHHHHHHTTCCCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTCCGGGHHHHHHHHHHHTCEEEEEECTTCCHH
T ss_pred HHHHHHHHhhcCCCcEEEEeccccccccCHHHHhhhhcccCeeEEeccCCcHHHHHHHHhhccccCcceEEEecccchhH
Confidence 46678888887788887644222 1 336788888999888832110 00
Q ss_pred -----------------CC--Cc------hhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 234 -----------------LD--YV------PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 234 -----------------~~--~g------~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
.. .| ....+.+.++++.. ++||++--||++++|+.+++..|||+|.+|++++.
T Consensus 148 ri~~i~~~s~gFiY~vs~~GvTG~~~~~~~~~~~~v~~vk~~t--~~Pv~vGFGI~~~e~v~~~~~~~ADGvIVGSaiv~ 225 (248)
T d1geqa_ 148 RLKVIDDMTTGFVYLVSLYGTTGAREEIPKTAYDLLRRAKRIC--RNKVAVGFGVSKREHVVSLLKEGANGVVVGSALVK 225 (248)
T ss_dssp HHHHHHHHCSSEEEEECCC-------CCCHHHHHHHHHHHHHC--SSCEEEESCCCSHHHHHHHHHTTCSEEEECHHHHH
T ss_pred HHHHHHhcCCCeEEEEecccccccchhhhhhHHHHHHHHhhhc--ccceeeecccCCHHHHHHHHhcCCCEEEECHHHHH
Confidence 00 01 11235567777664 79999988999999999999999999999999998
Q ss_pred HhhhcCh
Q 019244 289 SLAAEGE 295 (344)
Q Consensus 289 ~~~~~G~ 295 (344)
-+...+.
T Consensus 226 ~i~~~~~ 232 (248)
T d1geqa_ 226 IIGEKGR 232 (248)
T ss_dssp HHHHHGG
T ss_pred HHHHhCc
Confidence 7654343
|
| >d1p1xa_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Escherichia coli [TaxId: 562]
Probab=97.82 E-value=4.1e-06 Score=74.11 Aligned_cols=91 Identities=25% Similarity=0.278 Sum_probs=59.9
Q ss_pred HHHHHHHHhc-CCcEEEEee-----cC-HHH---H-HHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHH--ccCCC
Q 019244 189 KDVKWLQTIT-KLPILVKGV-----LT-AED---A-RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKA--TQGRI 255 (344)
Q Consensus 189 ~~i~~i~~~~-~~PvivK~v-----~~-~~~---a-~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~--~~~~~ 255 (344)
++++.+++.. ..++.+|.+ ++ .+. + +.+.++|+|+|..|+.-+. ....+..+..+.++... .+.++
T Consensus 120 ~ei~~v~~~~~~~~~~lKVIlEt~~Ltd~e~i~~a~~ia~~aGadFvKTSTG~~~-~gat~~~v~~m~~~i~~~~~~~~v 198 (250)
T d1p1xa_ 120 DLVKACKEACAAANVLLKVIIETGELKDEALIRKASEISIKAGADFIKTSTGKVA-VNATPESARIMMEVIRDMGVEKTV 198 (250)
T ss_dssp HHHHHHHHHHHHTTCEEEEECCHHHHCSHHHHHHHHHHHHHTTCSEEECCCSCSS-CCCCHHHHHHHHHHHHHHTCTTTC
T ss_pred HHHHHHHHhhccCCceEEEEEeccccCcHHHHHHHHHHHHHcCcCeEEecCCcCC-CCCCHHHHHHHHHHhhhhccCcce
Confidence 4577777654 356778887 33 332 2 4568999999999863211 01123334444443322 23479
Q ss_pred cEEEecCCCCHHHHHHHHHcCCCEE
Q 019244 256 PVFLDGGVRRGTDVFKALALGASGI 280 (344)
Q Consensus 256 ~via~GGIr~g~dv~kalalGAd~V 280 (344)
.|-++|||||..|+.+.+.+||+.+
T Consensus 199 gIKasGGIrt~~~a~~~i~~ga~~i 223 (250)
T d1p1xa_ 199 GFKPAGGVRTAEDAQKYLAIADELF 223 (250)
T ss_dssp EEECBSSCCSHHHHHHHHHHHHHHH
T ss_pred eeEecCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999854
|
| >d1xi3a_ c.1.3.1 (A:) Thiamin phosphate synthase {Archaeon (Pyrococcus furiosus) [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Thiamin phosphate synthase family: Thiamin phosphate synthase domain: Thiamin phosphate synthase species: Archaeon (Pyrococcus furiosus) [TaxId: 2261]
Probab=97.82 E-value=0.00013 Score=62.18 Aligned_cols=79 Identities=24% Similarity=0.271 Sum_probs=62.2
Q ss_pred ecCHHHHHHHHHcCCcEEEEccCCCC--CCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEch
Q 019244 207 VLTAEDARIAVQAGAAGIIVSNHGAR--QLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 284 (344)
Q Consensus 207 v~~~~~a~~~~~~G~d~I~v~~~gG~--~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~ 284 (344)
+-+.+++..+.+.|+|++.++--.-+ ..+..+..++.+.++.+.. ++||++-||| +..++.+++.+||+.|.+.+
T Consensus 106 ~h~~~e~~~a~~~g~DYi~~gpvf~T~tk~~~~~~g~~~l~~~~~~~--~~Pv~AiGGI-~~~ni~~~~~~Ga~gvAvis 182 (206)
T d1xi3a_ 106 VYSLEEALEAEKKGADYLGAGSVFPTKTKEDARVIGLEGLRKIVESV--KIPVVAIGGI-NKDNAREVLKTGVDGIAVIS 182 (206)
T ss_dssp ESSHHHHHHHHHHTCSEEEEECSSCC----CCCCCHHHHHHHHHHHC--SSCEEEESSC-CTTTHHHHHTTTCSEEEESH
T ss_pred cCCHHHHHHHHhcCCCEEEeccccccccccccccccHHHHHHHHHhc--CCCEEEECCC-CHHHHHHHHHhCCCEEEEhH
Confidence 46889999999999999999753211 1122234567788887765 7999999999 67899999999999999999
Q ss_pred HHHH
Q 019244 285 PVVY 288 (344)
Q Consensus 285 ~~l~ 288 (344)
.++.
T Consensus 183 ~I~~ 186 (206)
T d1xi3a_ 183 AVMG 186 (206)
T ss_dssp HHHT
T ss_pred HHHC
Confidence 9874
|
| >d1piia2 c.1.2.4 (A:1-254) Indole-3-glycerophosphate synthase, IPGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Escherichia coli [TaxId: 562]
Probab=97.80 E-value=4.3e-05 Score=67.25 Aligned_cols=102 Identities=19% Similarity=0.223 Sum_probs=64.6
Q ss_pred cHHHHHHHHHhcCCcEEEEee-cCHHHHHHHHHcCCcEEEEccCC-C---------------------------------
Q 019244 187 SWKDVKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSNHG-A--------------------------------- 231 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v-~~~~~a~~~~~~G~d~I~v~~~g-G--------------------------------- 231 (344)
++++++.+++.+++||.-|.- .++.+...+..+|||+|-+--.- .
T Consensus 96 s~~~l~~v~~~~~~PiLrKDFIid~~QI~ear~~GADavLLI~~~L~~~~l~~l~~~a~~lgl~~LVEvh~~~El~~a~~ 175 (254)
T d1piia2 96 SFNFLPIVSQIAPQPILCKDFIIDPYQIYLARYYQADACLLMLSVLDDDQYRQLAAVAHSLEMGVLTEVSNEEEQERAIA 175 (254)
T ss_dssp CTTHHHHHHHHCCSCEEEESCCCSHHHHHHHHHTTCSEEEEETTTCCHHHHHHHHHHHHHTTCEEEEEECSHHHHHHHHH
T ss_pred CHHHHHHHHhccccccchhcccCcHHHHHHHHhhccchhhhhHhhhcccHHHHHHHHHHHHhhhHHHhhccHHHHHHHHh
Confidence 345666666666667666653 56666666666666666553110 0
Q ss_pred ----------CCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHH
Q 019244 232 ----------RQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 289 (344)
Q Consensus 232 ----------~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~ 289 (344)
|.+..-...+....++...++.+..+++.+||++..|+.. +..|+|+|.||+.+|.+
T Consensus 176 ~~a~iIGINnRnL~tf~vd~~~t~~L~~~ip~~~~~VsESGI~~~~d~~~-l~~g~davLiGeslm~~ 242 (254)
T d1piia2 176 LGAKVVGINNRDLRDLSIDLNRTRELAPKLGHNVTVISESGINTYAQVRE-LSHFANGFLIGSALMAH 242 (254)
T ss_dssp TTCSEEEEESEETTTTEECTHHHHHHHHHHCTTSEEEEESCCCCHHHHHH-HTTTCSEEEECHHHHTC
T ss_pred hcccccCccccchhhhhhhhHHHHHHHHhCCCCCEEEEcCCCCCHHHHHH-HHcCCCEEEEChHHhCC
Confidence 0111101122333344455566788999999999999855 67899999999999863
|
| >d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Pseudomonas putida [TaxId: 303]
Probab=97.80 E-value=6.4e-05 Score=64.75 Aligned_cols=164 Identities=13% Similarity=0.134 Sum_probs=102.3
Q ss_pred cCCHHHHHHHHHHHHHcCCcEEEeccCCccccccHHHHHhhcCCCC-cccccccccccccccccccchhhHHHHhhcCCC
Q 019244 106 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP-FLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDR 184 (344)
Q Consensus 106 ~~d~~~~~~~i~~a~~ag~~~l~~tvd~~~~g~r~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (344)
..+++....+.+.+.++|++.+.+|..+|..-.....++..| |. -++...+ +..+.+......+.+..++ +
T Consensus 25 ~~~~~~a~~~~~al~~~Gi~~iEitl~~p~a~~~i~~l~~~~--p~~~vGaGTV--~~~~~~~~a~~aGa~Fivs----P 96 (216)
T d1mxsa_ 25 IAREEDILPLADALAAGGIRTLEVTLRSQHGLKAIQVLREQR--PELCVGAGTV--LDRSMFAAVEAAGAQFVVT----P 96 (216)
T ss_dssp CSCGGGHHHHHHHHHHTTCCEEEEESSSTHHHHHHHHHHHHC--TTSEEEEECC--CSHHHHHHHHHHTCSSEEC----S
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHhC--CCcceeeeee--ecHHHHHHHHhCCCCEEEC----C
Confidence 457777788888888999999999998885433334444443 31 1111111 1100000001111112222 3
Q ss_pred CCcHHHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCC
Q 019244 185 SLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 264 (344)
Q Consensus 185 ~~~~~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr 264 (344)
.++.+.+++-++ .++|++ -++.|+.++..+.++|++.++++-.+- ..| ...+..+...+ .+++++.+|||.
T Consensus 97 ~~~~~v~~~a~~-~~i~~i-PGv~TpsEi~~A~~~G~~~vKlFPA~~---~~g---~~~ikal~~p~-p~~~fiptGGV~ 167 (216)
T d1mxsa_ 97 GITEDILEAGVD-SEIPLL-PGISTPSEIMMGYALGYRRFKLFPAEI---SGG---VAAIKAFGGPF-GDIRFCPTGGVN 167 (216)
T ss_dssp SCCHHHHHHHHH-CSSCEE-CEECSHHHHHHHHTTTCCEEEETTHHH---HTH---HHHHHHHHTTT-TTCEEEEBSSCC
T ss_pred CCcHHHHHHHHh-cCCCcc-CCcCCHHHHHHHHHCCCCEEEeccccc---ccc---HHHHHHHhccc-ccCceeccCCCC
Confidence 445556665555 588866 568999999999999999999964210 012 23444444444 379999999998
Q ss_pred CHHHHHHHHHcCCCEEEEchHHH
Q 019244 265 RGTDVFKALALGASGIFIGRPVV 287 (344)
Q Consensus 265 ~g~dv~kalalGAd~V~ig~~~l 287 (344)
..++..+|++|+-+++.|+.++
T Consensus 168 -~~n~~~yl~~~~v~avggs~l~ 189 (216)
T d1mxsa_ 168 -PANVRNYMALPNVMCVGTTWML 189 (216)
T ss_dssp -TTTHHHHHHSTTBCCEEECTTS
T ss_pred -HHHHHHHHhcCCeEEEEccccC
Confidence 5799999999988888787665
|
| >d1znna1 c.1.2.6 (A:18-271) Pyridoxal biosynthesis lyase PdxS {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: PdxS-like domain: Pyridoxal biosynthesis lyase PdxS species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.68 E-value=0.00022 Score=61.41 Aligned_cols=47 Identities=30% Similarity=0.490 Sum_probs=38.3
Q ss_pred HHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHH
Q 019244 243 ALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 289 (344)
Q Consensus 243 ~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~ 289 (344)
.+.++.+.-+-.+|++++|||.++.|+..++.||+|+|++++.++.+
T Consensus 178 l~~~v~~~g~l~v~~~~~~Gi~tpadaa~~MelG~dgV~v~s~I~~s 224 (254)
T d1znna1 178 VLREIKRLGRLPVVNFAAGGVTTPADAALMMHLGADGVFVGSGIFKS 224 (254)
T ss_dssp HHHHHHHHTSCSSEEEEESSCCSHHHHHHHHHTTCSEEEECGGGGGS
T ss_pred HHHHHHHhCCCCceEEecCCCCChhhHHHHHHcCCCEEEEcchhhcC
Confidence 34444443234799999999999999999999999999999988753
|
| >d1vyra_ c.1.4.1 (A:) Pentaerythritol tetranirate reductase {Enterobacter cloacae [TaxId: 550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Pentaerythritol tetranirate reductase species: Enterobacter cloacae [TaxId: 550]
Probab=97.62 E-value=0.00091 Score=61.78 Aligned_cols=97 Identities=13% Similarity=0.025 Sum_probs=67.4
Q ss_pred CcHHHHHHHHHhcC-CcEEEEeec------------CHHH----HHHHHHcCCcEEEEccCCCCCCCCchh-hHHHHHHH
Q 019244 186 LSWKDVKWLQTITK-LPILVKGVL------------TAED----ARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEV 247 (344)
Q Consensus 186 ~~~~~i~~i~~~~~-~PvivK~v~------------~~~~----a~~~~~~G~d~I~v~~~gG~~~~~g~~-~~~~l~~i 247 (344)
|..+.++.||+.++ -+|.++... +.++ ++.+.+.|+|++.++... +..+++ ....-..+
T Consensus 212 f~~Eii~aIr~~~g~d~i~~r~s~~~~~~~~~~gg~~~~e~~~~~~~l~~~gvd~i~vs~~~---~~~~~~~~~~~~~~~ 288 (363)
T d1vyra_ 212 LVLEVVDAVCNEWSADRIGIRVSPIGTFQNVDNGPNEEADALYLIEELAKRGIAYLHMSETD---LAGGKPYSEAFRQKV 288 (363)
T ss_dssp HHHHHHHHHHHHSCGGGEEEEECCSSCBTTBCCCTTHHHHHHHHHHHHHHTTCSEEEEECCB---TTBCCCCCHHHHHHH
T ss_pred hHHHHHhhhhhhcCCCCcceeecccccccchhhcccchHHHHHHHHHHHhcCCeeeecccCC---ccCCccccHHHHHHH
Confidence 45678999999984 357677641 2233 567889999999998532 112222 22333445
Q ss_pred HHHccCCCcEEEecCCCCHHHHHHHHHcC-CCEEEEchHHHH
Q 019244 248 VKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 288 (344)
Q Consensus 248 ~~~~~~~~~via~GGIr~g~dv~kalalG-Ad~V~ig~~~l~ 288 (344)
++.+ ++||++.| +.|+.++.++|+-| ||.|++||+++.
T Consensus 289 ~~~~--~~~vi~~G-~~t~~~ae~~l~~G~~DlV~~gR~lia 327 (363)
T d1vyra_ 289 RERF--HGVIIGAG-AYTAEKAEDLIGKGLIDAVAFGRDYIA 327 (363)
T ss_dssp HHHC--CSEEEEES-SCCHHHHHHHHHTTSCSEEEESHHHHH
T ss_pred HHhc--CceEEecC-CCCHHHHHHHHHCCCcceehhhHHHHH
Confidence 5555 57777755 66999999999999 899999999985
|
| >d2tpsa_ c.1.3.1 (A:) Thiamin phosphate synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Thiamin phosphate synthase family: Thiamin phosphate synthase domain: Thiamin phosphate synthase species: Bacillus subtilis [TaxId: 1423]
Probab=97.61 E-value=0.00023 Score=61.58 Aligned_cols=95 Identities=18% Similarity=0.142 Sum_probs=64.8
Q ss_pred HHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCC--CCCch-hhHHHHHHHHHHccCCCcEEEecCCCCHHH
Q 019244 192 KWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ--LDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTD 268 (344)
Q Consensus 192 ~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~--~~~g~-~~~~~l~~i~~~~~~~~~via~GGIr~g~d 268 (344)
..+|+..+-.++.--+-+.++++.+.+.|+|+|.++.-..+. .+..+ ...+.+..+.+. .-++||++-||| +.++
T Consensus 107 ~~~r~~~~~~iig~S~h~~~e~~~a~~~g~DYi~~gpvf~T~sK~~~~~~~~~~~~~~~~~~-~~~~Pv~AiGGI-~~~n 184 (226)
T d2tpsa_ 107 KEVRAAIGDMILGVSAHTMSEVKQAEEDGADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQ-GISIPIVGIGGI-TIDN 184 (226)
T ss_dssp HHHHHHHTTSEEEEEECSHHHHHHHHHHTCSEEEECCSSCCCSSSSCCCCCTTHHHHHHHHT-TCCCCEEEESSC-CTTT
T ss_pred hhhhhcccceeeeeeccchHHHHHHHhCcCCeEEEecccccccccccccccccchhHHHHHh-cCCCCEEEecCC-CHHH
Confidence 333444442333333468999999999999999997532221 11112 233445554432 137999999999 7899
Q ss_pred HHHHHHcCCCEEEEchHHHH
Q 019244 269 VFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 269 v~kalalGAd~V~ig~~~l~ 288 (344)
+.+++.+||+.|.+.+.++.
T Consensus 185 i~~l~~~Ga~giAvis~I~~ 204 (226)
T d2tpsa_ 185 AAPVIQAGADGVSMISAISQ 204 (226)
T ss_dssp SHHHHHTTCSEEEESHHHHT
T ss_pred HHHHHHhCCCEEEEhHHhhc
Confidence 99999999999999999874
|
| >d1qo2a_ c.1.2.1 (A:) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Thermotoga maritima [TaxId: 2336]
Probab=97.58 E-value=0.00018 Score=62.78 Aligned_cols=98 Identities=16% Similarity=0.227 Sum_probs=72.1
Q ss_pred HHHHHHHHhcCCcEEEEe-ecCHHHHHHHHHcCCcEEEEcc--------------------------------CCCCC--
Q 019244 189 KDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSN--------------------------------HGARQ-- 233 (344)
Q Consensus 189 ~~i~~i~~~~~~PvivK~-v~~~~~a~~~~~~G~d~I~v~~--------------------------------~gG~~-- 233 (344)
..++.+++ ...|+.+.+ +.+.++++.+.+.|++.|++.. +|++.
T Consensus 64 ~~~~~~~~-~~~pl~~gGGI~s~~~~~~~~~~Ga~kVvi~s~~~~~~~~~~~~~~~~~~~~v~iD~~~~~~~~~g~~~~~ 142 (241)
T d1qo2a_ 64 PVLEKLSE-FAEHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVLEDPSFLKSLREIDVEPVFSLDTRGGRVAFKGWLAEE 142 (241)
T ss_dssp HHHHHGGG-GGGGEEEESSCCSHHHHHHHHHTTCCEEEECHHHHHCTTHHHHHHTTTCEEEEEEEEETTEECCTTCSSCS
T ss_pred hheehhcc-cccchhhhhhhhhhhhhhhccccccceEecCcccccCchhhhhhcccccceeeecccccccccccCcccce
Confidence 34555555 457998877 5789999999999999998742 11110
Q ss_pred -C----------------------C----CchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcC------CCEE
Q 019244 234 -L----------------------D----YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG------ASGI 280 (344)
Q Consensus 234 -~----------------------~----~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalG------Ad~V 280 (344)
. + ...+.++.+..+.+.. ++|++++||+++..|+.++..+| +++|
T Consensus 143 ~~~~~~~~~~~~~~g~~eii~~dId~dGt~~G~d~~l~~~i~~~~--~~pvi~~GGv~s~~di~~l~~ig~~~~~~~~gv 220 (241)
T d1qo2a_ 143 EIDPVSLLKRLKEYGLEEIVHTEIEKDGTLQEHDFSLTKKIAIEA--EVKVLAAGGISSENSLKTAQKVHTETNGLLKGV 220 (241)
T ss_dssp CCCHHHHHHHHHTTTCCEEEEEETTHHHHTCCCCHHHHHHHHHHH--TCEEEEESSCCSHHHHHHHHHHHHHTTTSEEEE
T ss_pred eeehhHHHHHhhccccceEEEeehhhhhhccccchhhhhhhhccC--CceEEEECCCCCHHHHHHHHHccccccCCEeeE
Confidence 0 0 0124567777776655 79999999999999999998876 7899
Q ss_pred EEchHHHHH
Q 019244 281 FIGRPVVYS 289 (344)
Q Consensus 281 ~ig~~~l~~ 289 (344)
.+|++|+++
T Consensus 221 ivG~al~~g 229 (241)
T d1qo2a_ 221 IVGRAFLEG 229 (241)
T ss_dssp EECHHHHTT
T ss_pred EEHHHHHCC
Confidence 999999764
|
| >d1w0ma_ c.1.1.1 (A:) Triosephosphate isomerase {Thermoproteus tenax [TaxId: 2271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Thermoproteus tenax [TaxId: 2271]
Probab=97.47 E-value=0.0011 Score=57.02 Aligned_cols=102 Identities=21% Similarity=0.249 Sum_probs=67.4
Q ss_pred CcHHHHHHHHHhc---CCcEEEEeecCHHHHHHHHHcCCcEEEEccC--CCCCCCCchhhHHHH----HHHHHHccCCCc
Q 019244 186 LSWKDVKWLQTIT---KLPILVKGVLTAEDARIAVQAGAAGIIVSNH--GARQLDYVPATIMAL----EEVVKATQGRIP 256 (344)
Q Consensus 186 ~~~~~i~~i~~~~---~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~--gG~~~~~g~~~~~~l----~~i~~~~~~~~~ 256 (344)
..++.+.+..+.. ++-+++ -+.+.++++.+.+.+.+.|-.-.. .|+.....+...+.+ ..+.+ ...++|
T Consensus 98 ~~~~e~~~~~~~~~~~gl~~iv-cvge~~~~~~~~~~~~~iIayep~waIGtg~~~~~~~~~~i~~~i~~~~~-~~~~i~ 175 (226)
T d1w0ma_ 98 LKLNDLARLVAKAKSLGLDVVV-CAPDPRTSLAAAALGPHAVAVEPPELIGTGRAVSRYKPEAIVETVGLVSR-HFPEVS 175 (226)
T ss_dssp CBHHHHHHHHHHHHHTTCEEEE-EESSHHHHHHHHHTCCSEEEECCGGGTTTSCCHHHHCHHHHHHHHHHHHH-HCTTSE
T ss_pred hhccchHHHHHHHHHcCCEEEE-ecCchHHhhhhhccccceeeecchhhccCCCCCChhhhhHhhhhhhhhhc-cCCCce
Confidence 3454444433322 555444 357788899999999998877542 232221222222222 22222 235899
Q ss_pred EEEecCCCCHHHHHHHHHcCCCEEEEchHHHHH
Q 019244 257 VFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 289 (344)
Q Consensus 257 via~GGIr~g~dv~kalalGAd~V~ig~~~l~~ 289 (344)
|+..|||.++.|+..++.+|+|+|.+|++++.+
T Consensus 176 vlygGgV~~~n~~~~~~~~g~dGvLVGsA~l~a 208 (226)
T d1w0ma_ 176 VITGAGIESGDDVAAALRLGTRGVLLASAAVKA 208 (226)
T ss_dssp EEEESSCCSHHHHHHHHHTTCSEEEECHHHHTC
T ss_pred EEEecCcCChHHHHHHhcCCCCEEEechheecC
Confidence 999999999999999999999999999999863
|
| >d1hg3a_ c.1.1.1 (A:) Triosephosphate isomerase {Archaeon Pyrococcus woesei [TaxId: 2262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Archaeon Pyrococcus woesei [TaxId: 2262]
Probab=97.45 E-value=0.00075 Score=58.02 Aligned_cols=90 Identities=22% Similarity=0.280 Sum_probs=61.3
Q ss_pred CCcEEEEeecCHHHHHHHHHcCCcEEEEcc-----CCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHH
Q 019244 199 KLPILVKGVLTAEDARIAVQAGAAGIIVSN-----HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKAL 273 (344)
Q Consensus 199 ~~PvivK~v~~~~~a~~~~~~G~d~I~v~~-----~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kal 273 (344)
++.+++. +....+++.+.+.+.+.|-.-. +|.+....-+..+..+.+..+....++||+..|||.++.|+.+++
T Consensus 116 gl~~i~c-v~~~~~~~~~~~~~~~iiAyEpvwaIGtg~~~~~~~~~~i~~~i~~i~~~~~~v~vlygGsV~~~n~~~~~~ 194 (224)
T d1hg3a_ 116 GLMTMVC-SNNPAVSAAVAALNPDYVAVEPPELIGTGIPVSKAKPEVITNTVELVKKVNPEVKVLCGAGISTGEDVKKAI 194 (224)
T ss_dssp TCEEEEE-ESSHHHHHHHHTTCCSEEEECCTTTTTTSCCTTTSCTHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHH
T ss_pred CCceeec-hhhHHHHHhhhhcccceEEecchHhhccccCCCchhhhhhhhhhhhhhhhccccceEEeCCcCCHHHHHHHH
Confidence 5555443 4567788888889988776643 221111111222332223333345689999999999999999999
Q ss_pred HcCCCEEEEchHHHHH
Q 019244 274 ALGASGIFIGRPVVYS 289 (344)
Q Consensus 274 alGAd~V~ig~~~l~~ 289 (344)
.+|+|+|.+|++++.+
T Consensus 195 ~~g~dGvLVGsAsl~a 210 (224)
T d1hg3a_ 195 ELGTVGVLLASGVTKA 210 (224)
T ss_dssp HTTCSEEEESHHHHTC
T ss_pred hCCCCEEEEcceeecC
Confidence 9999999999999863
|
| >d1gwja_ c.1.4.1 (A:) Morphinone reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Morphinone reductase species: Pseudomonas putida [TaxId: 303]
Probab=97.41 E-value=0.0019 Score=59.75 Aligned_cols=99 Identities=13% Similarity=-0.005 Sum_probs=67.6
Q ss_pred CcHHHHHHHHHhcC-CcEEEEeec-------C---H-----HHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHH
Q 019244 186 LSWKDVKWLQTITK-LPILVKGVL-------T---A-----EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVK 249 (344)
Q Consensus 186 ~~~~~i~~i~~~~~-~PvivK~v~-------~---~-----~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~ 249 (344)
|..+.|+.||+.++ ..|+++... + . ..+..+...|++.+.++...-...+...+ ......+++
T Consensus 215 f~~EIi~aIR~~vg~~~v~~r~~~~~~~~g~~~~~~~~~~~~~~~~ld~~~i~~~~~~~~~~~~~~~~~~-~~~~~~i~~ 293 (374)
T d1gwja_ 215 FPLEVVDAVAEVFGPERVGIRLTPFLELFGLTDDEPEAMAFYLAGELDRRGLAYLHFNEPDWIGGDITYP-EGFREQMRQ 293 (374)
T ss_dssp HHHHHHHHHHHHHCGGGEEEEECTTCCCTTCCCSCHHHHHHHHHHHHHHHTCSEEEEECSCBTTBCCCCC-TTHHHHHHH
T ss_pred hHHHHHHHHHHHcCCcceeeeeeeeccccCCcccchHHHHHHhhccccccCceEEEeccCcccCCCcchh-HHHHHHHHH
Confidence 45678999999884 556666641 1 1 22455678899999987532111111111 112344566
Q ss_pred HccCCCcEEEecCCCCHHHHHHHHHcC-CCEEEEchHHHH
Q 019244 250 ATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 288 (344)
Q Consensus 250 ~~~~~~~via~GGIr~g~dv~kalalG-Ad~V~ig~~~l~ 288 (344)
.+ ++||++.|+| +...+.++|+-| ||+|++||+++.
T Consensus 294 ~~--~~pvi~~G~i-~~~~ae~~l~~g~aDlV~~gR~~ia 330 (374)
T d1gwja_ 294 RF--KGGLIYCGNY-DAGRAQARLDDNTADAVAFGRPFIA 330 (374)
T ss_dssp HC--CSEEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHH
T ss_pred Hc--CCCEEEECCc-CHHHHHHHHHcCCCcEehhhHHHHH
Confidence 66 7999999999 789999999988 999999999985
|
| >d1qapa1 c.1.17.1 (A:130-296) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like family: NadC C-terminal domain-like domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=97.36 E-value=0.0011 Score=54.52 Aligned_cols=88 Identities=19% Similarity=0.162 Sum_probs=67.6
Q ss_pred HHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHH
Q 019244 189 KDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 268 (344)
Q Consensus 189 ~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~d 268 (344)
+.++.+++..+-..+.-++.+.++++.+.++|+|.|-++|.. | +.+.++.+.+++++.+-+||||. .+.
T Consensus 68 ~~~~~~~~~~~~~~IeVEv~~~~~~~~a~~~g~diImLDN~~-------p---e~~~~av~~i~~~~~lEaSGgI~-~~n 136 (167)
T d1qapa1 68 QAVEKAFWLHPDVPVEVEVENLDELDDALKAGADIIMLDNFN-------T---DQMREAVKRVNGQARLEVSGNVT-AET 136 (167)
T ss_dssp HHHHHHHHHSTTSCEEEEESSHHHHHHHHHTTCSEEEESSCC-------H---HHHHHHHHTTCTTCCEEECCCSC-HHH
T ss_pred hhhHHHhhcCCCceEEEecCcHHHHHHHHhcCCcEEEecCCC-------H---HHHHHHHHhcCCceEEEEeCCCC-HHH
Confidence 356666665532334457899999999999999999998742 3 44455555666689999999997 888
Q ss_pred HHHHHHcCCCEEEEchHHH
Q 019244 269 VFKALALGASGIFIGRPVV 287 (344)
Q Consensus 269 v~kalalGAd~V~ig~~~l 287 (344)
+.++...|+|.+-+|.+..
T Consensus 137 i~~ya~~GVD~IS~galt~ 155 (167)
T d1qapa1 137 LREFAETGVDFISVGALTK 155 (167)
T ss_dssp HHHHHHTTCSEEECSHHHH
T ss_pred HHHHHHcCCCEEECCcccC
Confidence 9999999999999998754
|
| >d1qpoa1 c.1.17.1 (A:117-285) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like family: NadC C-terminal domain-like domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.32 E-value=0.00069 Score=55.87 Aligned_cols=89 Identities=9% Similarity=-0.002 Sum_probs=66.8
Q ss_pred HHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHH
Q 019244 190 DVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDV 269 (344)
Q Consensus 190 ~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv 269 (344)
.++.+++..+-..+.-++.+.++++.+.++|+|.|-++|. .|..+....+..+.....+.+-+|||| +...+
T Consensus 69 ~i~~~k~~~~~~~I~VEv~s~~q~~~a~~~~~diImLDN~-------sp~~~k~~v~~~~~~~~~i~lEaSGgI-~~~ni 140 (169)
T d1qpoa1 69 ALRAVRNAAPDLPCEVEVDSLEQLDAVLPEKPELILLDNF-------AVWQTQTAVQRRDSRAPTVMLESSGGL-SLQTA 140 (169)
T ss_dssp HHHHHHHHCTTSCEEEEESSHHHHHHHGGGCCSEEEEETC-------CHHHHHHHHHHHHHHCTTCEEEEESSC-CTTTH
T ss_pred hhhhhhhhcCCCceEEEeccHHHhhhhhhcCCcEEEecCc-------ChHhHHHHHHHhhccCCeeEEEEeCCC-CHHHH
Confidence 4777777664434445689999999999999999999874 344443332333333457889999999 58889
Q ss_pred HHHHHcCCCEEEEchHH
Q 019244 270 FKALALGASGIFIGRPV 286 (344)
Q Consensus 270 ~kalalGAd~V~ig~~~ 286 (344)
.++...|+|.+.+|.+.
T Consensus 141 ~~ya~~GvD~IS~galt 157 (169)
T d1qpoa1 141 ATYAETGVDYLAVGALT 157 (169)
T ss_dssp HHHHHTTCSEEECGGGT
T ss_pred HHHHHcCCCEEECCccc
Confidence 99999999999999764
|
| >d1icpa_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 12-oxophytodienoate reductase (OPR, OYE homolog) species: Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]
Probab=97.15 E-value=0.002 Score=59.36 Aligned_cols=100 Identities=15% Similarity=-0.005 Sum_probs=61.8
Q ss_pred CcHHHHHHHHHhcC-CcEEEEeec---------CHHH------HHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHH
Q 019244 186 LSWKDVKWLQTITK-LPILVKGVL---------TAED------ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVK 249 (344)
Q Consensus 186 ~~~~~i~~i~~~~~-~PvivK~v~---------~~~~------a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~ 249 (344)
|..+.|+.||+.++ -+++++... +.++ ++.+...+++.+.++...-...............+++
T Consensus 210 f~~Eii~aIr~~~g~~~i~~r~s~~~~~~~~g~~~~~~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 289 (364)
T d1icpa_ 210 FALEIVEAVANEIGSDRVGIRISPFAHYNEAGDTNPTALGLYMVESLNKYDLAYCHVVEPRMKTAWEKIECTESLVPMRK 289 (364)
T ss_dssp HHHHHHHHHHHHHCGGGEEEEECTTCCTTTCCCSCHHHHHHHHHHHHGGGCCSEEEEECCSCCC------CCCCSHHHHH
T ss_pred HHHHHhhhhhcccCCcceeEEecccccccCCcCcchHHHHHHHHHHhhccceeeeeeecCcccccccccccHHHHHHHHH
Confidence 35678999999984 467777641 2222 2334455666666543211110011111222344555
Q ss_pred HccCCCcEEEecCCCCHHHHHHHHHcC-CCEEEEchHHHH
Q 019244 250 ATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 288 (344)
Q Consensus 250 ~~~~~~~via~GGIr~g~dv~kalalG-Ad~V~ig~~~l~ 288 (344)
.+ +.|+++.||+ +..++.++|+-| ||+|++||+++.
T Consensus 290 ~~--~~~vi~~g~~-~~~~ae~~l~~g~aD~V~~gR~~ia 326 (364)
T d1icpa_ 290 AY--KGTFIVAGGY-DREDGNRALIEDRADLVAYGRLFIS 326 (364)
T ss_dssp HC--CSCEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHH
T ss_pred hc--CCCEEEECCC-CHHHHHHHHHcCCCceehhHHHHHH
Confidence 55 6899998886 789999999986 999999999985
|
| >d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.11 E-value=0.0036 Score=53.43 Aligned_cols=50 Identities=20% Similarity=0.256 Sum_probs=37.4
Q ss_pred hhhHHHHHHHHHHc---cCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 238 PATIMALEEVVKAT---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 238 ~~~~~~l~~i~~~~---~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
+..++-+.++++.. ..+++|.+||||+ .+.+.+...+|||.+.+|+.++.
T Consensus 149 ~~~~~ki~~l~~~~~~~~~~~~I~vDGGIn-~~~i~~l~~aGad~~V~Gsaif~ 201 (217)
T d2flia1 149 PECLEKVATVAKWRDEKGLSFDIEVDGGVD-NKTIRACYEAGANVFVAGSYLFK 201 (217)
T ss_dssp GGGHHHHHHHHHHHHHTTCCCEEEEESSCC-TTTHHHHHHHTCCEEEESHHHHT
T ss_pred hhhHHHHHHHHHHHHhcCCCeEEEEeCCCC-HHHHHHHHHCCCCEEEEchHHhC
Confidence 34555566665543 2368999999997 56788888999999999987653
|
| >d1l6wa_ c.1.10.1 (A:) Decameric fructose-6-phosphate aldolase/transaldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Decameric fructose-6-phosphate aldolase/transaldolase species: Escherichia coli [TaxId: 562]
Probab=97.08 E-value=0.0028 Score=54.32 Aligned_cols=98 Identities=16% Similarity=0.162 Sum_probs=74.8
Q ss_pred HHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHc---cCCCcEEEecCCCCH
Q 019244 190 DVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRRG 266 (344)
Q Consensus 190 ~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~---~~~~~via~GGIr~g 266 (344)
.++.+.+. ++++-+=.+.+...+..+.++|+++|.. .-||-.++|....+.+.++.+.. +.+..|++ +.+|+.
T Consensus 95 ai~~L~~~-Gi~vn~Tavfs~~Qa~~Aa~aga~yvsp--y~gR~~d~g~dg~~~i~~~~~~~~~~~~~tkIl~-AS~R~~ 170 (220)
T d1l6wa_ 95 AIKMLKAE-GIPTLGTAVYGAAQGLLSALAGAEYVAP--YVNRIDAQGGSGIQTVTDLHQLLKMHAPQAKVLA-ASFKTP 170 (220)
T ss_dssp HHHHHHHH-TCCEEEEEECSHHHHHHHHHHTCSEEEE--BHHHHHHTTSCHHHHHHHHHHHHHHHCTTCEEEE-BCCSSH
T ss_pred hhhhhhhc-ccchhhhhcccHHHHHHhhhcCCcEEee--eeeehhhcccCChHHHHHHHHHHHhcCCCceEee-hhcCCH
Confidence 45555443 8999888899999999999999999866 34554455555566666655433 33566665 779999
Q ss_pred HHHHHHHHcCCCEEEEchHHHHHhh
Q 019244 267 TDVFKALALGASGIFIGRPVVYSLA 291 (344)
Q Consensus 267 ~dv~kalalGAd~V~ig~~~l~~~~ 291 (344)
.++.++..+|||.+-+.-.++..+.
T Consensus 171 ~~v~~~~~~G~d~iTip~~v~~~l~ 195 (220)
T d1l6wa_ 171 RQALDCLLAGCESITLPLDVAQQMI 195 (220)
T ss_dssp HHHHHHHHTTCSEEEECHHHHHHTT
T ss_pred HHHHHHHHcCCCEEEcCHHHHHHHh
Confidence 9999999999999999999988764
|
| >d2a4aa1 c.1.10.1 (A:3-258) Fructose-1,6-bisphosphate aldolase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Fructose-1,6-bisphosphate aldolase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=97.03 E-value=0.0009 Score=58.82 Aligned_cols=79 Identities=15% Similarity=0.206 Sum_probs=51.1
Q ss_pred cEEEEee-----c-CHHH---HH-HHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHH-H------ccCCCcEEEecCC
Q 019244 201 PILVKGV-----L-TAED---AR-IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVK-A------TQGRIPVFLDGGV 263 (344)
Q Consensus 201 PvivK~v-----~-~~~~---a~-~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~-~------~~~~~~via~GGI 263 (344)
+.++|.+ + +.+. +. .+.++|+|+|..|+.-+. ....+.....+.++.+ . .++++.|-++|||
T Consensus 135 ~~~lKVIlEt~~L~~~e~i~~~~~~~~~aGadFVKTSTG~~~-~gat~~~v~~m~~~v~e~~~~~~~~g~~~gVKASGGI 213 (256)
T d2a4aa1 135 NKILKVIIEVGELKTEDLIIKTTLAVLNGNADFIKTSTGKVQ-INATPSSVEYIIKAIKEYIKNNPEKNNKIGLKVSGGI 213 (256)
T ss_dssp TSEEEEECCHHHHCSHHHHHHHHHHHHTTTCSEEECCCSCSS-CCCCHHHHHHHHHHHHHHHHHCGGGTTCCEEEEESSC
T ss_pred CCeeEeeehhhhcCcHHHHHHHHHHHHhcccHHHHhccCCCC-CCCCHHHHHHHHHHHHHHHhhccccCCceeEEecCCC
Confidence 4567877 2 2332 22 346899999999863111 0112344444433322 1 1468999999999
Q ss_pred CCHHHHHHHHHcCCCEE
Q 019244 264 RRGTDVFKALALGASGI 280 (344)
Q Consensus 264 r~g~dv~kalalGAd~V 280 (344)
|+..++.+.+.+||+.+
T Consensus 214 rt~~~a~~~i~~g~~~l 230 (256)
T d2a4aa1 214 SDLNTASHYILLARRFL 230 (256)
T ss_dssp CSHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 99999999999999854
|
| >d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: 3-keto-L-gulonate 6-phosphate decarboxylase species: Escherichia coli [TaxId: 562]
Probab=97.03 E-value=0.00095 Score=55.83 Aligned_cols=97 Identities=13% Similarity=0.086 Sum_probs=62.7
Q ss_pred cCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHH
Q 019244 208 LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 287 (344)
Q Consensus 208 ~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l 287 (344)
.+.+....+.+.+++.+.+......+..........+..+++..+..+++..+||++ ..++-+++..|||.+.+||+++
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~i~~~~~~~~~i~~~gGi~-~~~~~~~~~~Gad~iVVGr~I~ 193 (213)
T d1q6oa_ 115 WTWEQAQQWRDAGIGQVVYHRSRDAQAAGVAWGEADITAIKRLSDMGFKVTVTGGLA-LEDLPLFKGIPIHVFIAGRSIR 193 (213)
T ss_dssp CCHHHHHHHHHTTCCEEEEECCHHHHHTTCCCCHHHHHHHHHHHHTTCEEEEESSCC-GGGGGGGTTSCCSEEEESHHHH
T ss_pred CCHHHHHHHHHhHHHHHHHHHhcccCcCCeeCCHHHHHHHHHhhccCceEecCCCcC-cCCHHHHHHcCCCEEEEChhhc
Confidence 467888899999999887642100001111122234444444444578999999986 7899999999999999999987
Q ss_pred HHhhhcChHHHHHHHHHHHHHHHH
Q 019244 288 YSLAAEGEKGVRRVLEMLREEFEL 311 (344)
Q Consensus 288 ~~~~~~G~~~v~~~l~~l~~el~~ 311 (344)
.+ +...+.++.++++++.
T Consensus 194 ~a------~dp~~a~~~~~~~i~~ 211 (213)
T d1q6oa_ 194 DA------ASPVEAARQFKRSIAE 211 (213)
T ss_dssp TS------SCHHHHHHHHHHHHHH
T ss_pred CC------CCHHHHHHHHHHHHHH
Confidence 53 2223445556665543
|
| >d1vpxa_ c.1.10.1 (A:) Decameric fructose-6-phosphate aldolase/transaldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Decameric fructose-6-phosphate aldolase/transaldolase species: Thermotoga maritima [TaxId: 2336]
Probab=97.01 E-value=0.0036 Score=53.56 Aligned_cols=113 Identities=21% Similarity=0.209 Sum_probs=80.0
Q ss_pred HHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHc---cCCCcEEEecCCCCH
Q 019244 190 DVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRRG 266 (344)
Q Consensus 190 ~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~---~~~~~via~GGIr~g 266 (344)
.++.+.+. ++++-+=.+.|.+++..+.++|+++|-. .-||-.+.|......+.++.+.. +.+..|++ +.+|+.
T Consensus 95 ai~~L~~~-Gi~~n~Tavfs~~Qa~~Aa~aga~yisp--y~gR~~d~g~d~~~~i~~~~~~~~~~~~~tkil~-AS~r~~ 170 (218)
T d1vpxa_ 95 AVKTLSAE-GIKTNVTLVFSPAQAILAAKAGATYVSP--FVGRMDDLSNDGMRMLGEIVEIYNNYGFETEIIA-ASIRHP 170 (218)
T ss_dssp HHHHHHHT-TCCEEEEEECSHHHHHHHHHHTCSEEEE--BHHHHHHTTSCHHHHHHHHHHHHHHHTCSCEEEE-BSCCSH
T ss_pred HHHHHHHc-CCceeeEEecCHHHHHHHHhcCCCEEEe--eecchhhhcccchhhHHHHHHHHhhhcccceeee-eccCCH
Confidence 45555553 8999988889999999999999998865 33443344444555555554433 34677777 669999
Q ss_pred HHHHHHHHcCCCEEEEchHHHHHhhhcC--hHHHHHHHHHHH
Q 019244 267 TDVFKALALGASGIFIGRPVVYSLAAEG--EKGVRRVLEMLR 306 (344)
Q Consensus 267 ~dv~kalalGAd~V~ig~~~l~~~~~~G--~~~v~~~l~~l~ 306 (344)
.++.+++..|||.+-+.-.++..+..+- .++++.+.+.++
T Consensus 171 ~~v~~a~~~G~d~iTip~~v~~~l~~~~~t~~~v~~F~~D~~ 212 (218)
T d1vpxa_ 171 MHVVEAALMGVDIVTMPFAVLEKLFKHPMTDLGIERFMEDWK 212 (218)
T ss_dssp HHHHHHHHHTCSEEEECHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEcCHHHHHHHHCCCccHHHHHHHHHHHH
Confidence 9999999999999999999988765321 234444444443
|
| >d2czda1 c.1.2.3 (A:1-206) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.89 E-value=0.0017 Score=54.86 Aligned_cols=115 Identities=22% Similarity=0.236 Sum_probs=71.0
Q ss_pred HHHHHHHHhcCCcEEE--Eeec---CH-HHHHHHHHcCCcEEEEccCCCCC----------------CC-----------
Q 019244 189 KDVKWLQTITKLPILV--KGVL---TA-EDARIAVQAGAAGIIVSNHGARQ----------------LD----------- 235 (344)
Q Consensus 189 ~~i~~i~~~~~~Pviv--K~v~---~~-~~a~~~~~~G~d~I~v~~~gG~~----------------~~----------- 235 (344)
+.++++++..+.||+. |..- |. ..++.+.++|+|.++|...+|.. ++
T Consensus 41 ~~i~~l~~~~~~~if~DlK~~Di~~t~~~~~~~~~~~gad~~Tvh~~~g~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~ 120 (206)
T d2czda1 41 DIIRRLKEETGVEIIADLKLADIPNTNRLIARKVFGAGADYVIVHTFVGRDSVMAVKELGEIIMVVEMSHPGALEFINPL 120 (206)
T ss_dssp THHHHHHHHHCCEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEESTTCHHHHHHHHTTSEEEEECCCCSGGGGTTTGGG
T ss_pred HHHHHHHHhcCCeEEEEeeeeeecccchheehhhccccccEEEeeecccHHHHHHhhhcccceEEEeccCCcccccccHH
Confidence 4688888777888765 5542 22 33677789999999997766531 00
Q ss_pred -----------------CchhhHHHHHHHHHHccCCCcEEEecCCCC-HHHHHHHHHcCCCEEEEchHHHHHhhhcChHH
Q 019244 236 -----------------YVPATIMALEEVVKATQGRIPVFLDGGVRR-GTDVFKALALGASGIFIGRPVVYSLAAEGEKG 297 (344)
Q Consensus 236 -----------------~g~~~~~~l~~i~~~~~~~~~via~GGIr~-g~dv~kalalGAd~V~ig~~~l~~~~~~G~~~ 297 (344)
.+....+.+..+++..+....+ ...||+. +.+..+++..|||.+.+||++..+ +.
T Consensus 121 ~~~~~~~a~~~~~~g~~~~~~~~~~~~~~r~~~~~~~~i-~~pGI~~~~~~~~~ai~~Gad~iVvGR~I~~a------~d 193 (206)
T d2czda1 121 TDRFIEVANEIEPFGVIAPGTRPERIGYIRDRLKEGIKI-LAPGIGAQGGKAKDAVKAGADYIIVGRAIYNA------PN 193 (206)
T ss_dssp HHHHHHHHHHHCCSEEECCCSSTHHHHHHHHHSCTTCEE-EECCCCSSTTHHHHHHHHTCSEEEECHHHHTS------SS
T ss_pred HHHHHHHHHhcccccccccccCchhhhhhhhhhcccceE-ECCCccccCCCHHHHHHhCCCEEEEChhhccC------CC
Confidence 0011122334444444444544 4455553 557788999999999999999753 22
Q ss_pred HHHHHHHHHHHHH
Q 019244 298 VRRVLEMLREEFE 310 (344)
Q Consensus 298 v~~~l~~l~~el~ 310 (344)
..+.++.+++||+
T Consensus 194 P~~aa~~i~~~ik 206 (206)
T d2czda1 194 PREAAKAIYDEIR 206 (206)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhC
Confidence 2345666666653
|
| >d1q45a_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 12-oxophytodienoate reductase (OPR, OYE homolog) species: Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]
Probab=96.88 E-value=0.0082 Score=55.36 Aligned_cols=100 Identities=12% Similarity=-0.000 Sum_probs=61.5
Q ss_pred CcHHHHHHHHHhcC-CcEEEEeec---------C-H-H----HH------HHHHHcCCcEEEEccCCCCCCC------Cc
Q 019244 186 LSWKDVKWLQTITK-LPILVKGVL---------T-A-E----DA------RIAVQAGAAGIIVSNHGARQLD------YV 237 (344)
Q Consensus 186 ~~~~~i~~i~~~~~-~PvivK~v~---------~-~-~----~a------~~~~~~G~d~I~v~~~gG~~~~------~g 237 (344)
|..+.|+.||+.++ -+++++... + . + .+ ..+...+++++.++........ .+
T Consensus 211 f~lEii~aIr~~vg~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 290 (380)
T d1q45a_ 211 FLKQVVEGVVSAIGASKVGVRVSPAIDHLDATDSDPLSLGLAVVGMLNKLQGVNGSKLAYLHVTQPRYHAYGQTESGRQG 290 (380)
T ss_dssp HHHHHHHHHHHHHCGGGEEEEECTTCCGGGCCCSCHHHHHHHHHHHHHHHHHTTSSCCSEEEEECCC-------------
T ss_pred hHHHHHHHHHHHccccCceEEEeecccccccccccchhhhhhhhhhhhHhhhhccccceeEEeccCcccccccccccccC
Confidence 35678999999884 344444321 1 1 1 11 1222467888888753221110 01
Q ss_pred hh--hHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcC-CCEEEEchHHHH
Q 019244 238 PA--TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 288 (344)
Q Consensus 238 ~~--~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalG-Ad~V~ig~~~l~ 288 (344)
+. .......+++.+ ++||+++||+ +..++.++|+.| ||+|++||+++.
T Consensus 291 ~~~~~~~~~~~ik~~~--~~pv~~~Gg~-~~~~ae~~l~~G~~DlV~~gR~lia 341 (380)
T d1q45a_ 291 SDEEEAKLMKSLRMAY--NGTFMSSGGF-NKELGMQAVQQGDADLVSYGRLFIA 341 (380)
T ss_dssp --CHHHHHHHHHHHHS--CSCEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHH
T ss_pred chhhhHHHHHHHhhcc--CCcEEeCCCC-CHHHHHHHHHcCCccchhhhHHHHH
Confidence 11 223344555555 7899999998 689999999998 999999999985
|
| >d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=96.85 E-value=0.0024 Score=55.79 Aligned_cols=76 Identities=26% Similarity=0.290 Sum_probs=60.1
Q ss_pred HHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 210 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
.+.|+...+.|+|.+.+-.-.+. .....+....+.++.+.. .+|+.+.||||+-+|+.+++.+||+-|.+++..+.
T Consensus 35 ~~~a~~~~~~gadei~ivDl~~~-~~~~~~~~~~i~~i~~~~--~~pi~~gGGIr~~e~~~~ll~~G~~kVii~s~~~~ 110 (252)
T d1h5ya_ 35 VEMAVRYEEEGADEIAILDITAA-PEGRATFIDSVKRVAEAV--SIPVLVGGGVRSLEDATTLFRAGADKVSVNTAAVR 110 (252)
T ss_dssp HHHHHHHHHTTCSCEEEEECCCC-TTTHHHHHHHHHHHHHHC--SSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHH
T ss_pred HHHHHHHHHCCCCEEEEEecccc-ccccccHHHHHHHHHhhc--CCcceeecccchhhhhhhHhhcCCcEEEecccccC
Confidence 36788889999999877542221 122345667788887766 79999999999999999999999999999987654
|
| >d1o4ua1 c.1.17.1 (A:104-273) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like family: NadC C-terminal domain-like domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.85 E-value=0.0015 Score=53.78 Aligned_cols=89 Identities=25% Similarity=0.225 Sum_probs=66.0
Q ss_pred HHHHHHHhcC--CcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHH
Q 019244 190 DVKWLQTITK--LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 267 (344)
Q Consensus 190 ~i~~i~~~~~--~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~ 267 (344)
.++.+++..+ .++.| ++.+.+++..+.++|+|.|-++|. .|..+..+.+..+...+++.+-+||||. .+
T Consensus 67 ~~~~~~~~~~~~~~I~V-Ev~~~~e~~~a~~~g~d~i~LDn~-------~pe~~k~~~~~lk~~~~~i~lEaSGGI~-~~ 137 (170)
T d1o4ua1 67 AVQEVRKIIPFTTKIEV-EVENLEDALRAVEAGADIVMLDNL-------SPEEVKDISRRIKDINPNVIVEVSGGIT-EE 137 (170)
T ss_dssp HHHHHHTTSCTTSCEEE-EESSHHHHHHHHHTTCSEEEEESC-------CHHHHHHHHHHHHHHCTTSEEEEEECCC-TT
T ss_pred HHHHHHhhCCCCceEEE-EeCcHHHHHHHHhcCccEEEEcCc-------ChhhHhHHHHHHHhhCCcEEEEEECCCC-HH
Confidence 4777776553 44554 678999999999999999999874 3444443333333445689999999997 67
Q ss_pred HHHHHHHcCCCEEEEchHHH
Q 019244 268 DVFKALALGASGIFIGRPVV 287 (344)
Q Consensus 268 dv~kalalGAd~V~ig~~~l 287 (344)
.+.++...|+|.+.+|.+..
T Consensus 138 ni~~~a~~GVD~Is~g~lt~ 157 (170)
T d1o4ua1 138 NVSLYDFETVDVISSSRLTL 157 (170)
T ss_dssp TGGGGCCTTCCEEEEGGGTS
T ss_pred HHHHHHHcCCCEEEcCcccc
Confidence 78777779999999997653
|
| >d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermotoga maritima [TaxId: 2336]
Probab=96.84 E-value=0.0038 Score=54.40 Aligned_cols=75 Identities=17% Similarity=0.243 Sum_probs=58.8
Q ss_pred HHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 211 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 211 ~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
+.|+...+.|+|.+.+-.--+. ........+.+.++.+.. .+|+...||||+-+|+.+.+.+||+-|.+|+..+.
T Consensus 34 ~~a~~~~~~g~dei~ivDld~~-~~~~~~~~~~i~~i~~~~--~~pi~vgGGIr~~e~i~~~l~~Ga~kviigs~~~~ 108 (253)
T d1thfd_ 34 ELGKFYSEIGIDELVFLDITAS-VEKRKTMLELVEKVAEQI--DIPFTVGGGIHDFETASELILRGADKVSINTAAVE 108 (253)
T ss_dssp HHHHHHHHTTCCEEEEEESSCS-SSHHHHHHHHHHHHHTTC--CSCEEEESSCCSHHHHHHHHHTTCSEEEESHHHHH
T ss_pred HHHHHHHHcCCCEEEEEeeccc-ccCcccHHHHHHHHHhcc--CccceeecccccchhhhhHHhcCCCEEEEChHHhh
Confidence 5688899999999988542221 112234566777776654 79999999999999999999999999999998764
|
| >d1ujpa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Thermus thermophilus [TaxId: 274]
Probab=96.80 E-value=0.0034 Score=55.42 Aligned_cols=102 Identities=22% Similarity=0.278 Sum_probs=68.0
Q ss_pred cHHHHHHHHHhcCCcEEEEeecC------HH-HHHHHHHcCCcEEEEccCCCC------------------------C--
Q 019244 187 SWKDVKWLQTITKLPILVKGVLT------AE-DARIAVQAGAAGIIVSNHGAR------------------------Q-- 233 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v~~------~~-~a~~~~~~G~d~I~v~~~gG~------------------------~-- 233 (344)
.++.++++|+..+.|+++=+-.+ .+ -++.+.++|+|++++-.-... .
T Consensus 79 ~~~~~~~~r~~~~~pivlm~Y~N~i~~~G~~~F~~~~~~aGvdGliipDLP~ee~~~~~~~~~~~gl~~I~lvsPtT~~e 158 (271)
T d1ujpa_ 79 ALELVREVRALTEKPLFLMTYLNPVLAWGPERFFGLFKQAGATGVILPDLPPDEDPGLVRLAQEIGLETVFLLAPTSTDA 158 (271)
T ss_dssp HHHHHHHHHHHCCSCEEEECCHHHHHHHCHHHHHHHHHHHTCCEEECTTCCGGGCHHHHHHHHHHTCEEECEECTTCCHH
T ss_pred HHHHHHHHhcccCCcEEEEeechhhhhCCchhHhHHHhhcCceeEeccchhhhhHHHHHHHhhccccceeeccCCCcchH
Confidence 46678889888889988644322 23 378899999999988421100 0
Q ss_pred -----------------CC--Cch------hhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 234 -----------------LD--YVP------ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 234 -----------------~~--~g~------~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
.. .|. ...+.+..+++.. ++||++-=||++.+|+.++ .|||+|.+|++++.
T Consensus 159 Ri~~i~~~s~GFIY~Vs~~GvTG~~~~~~~~~~~~i~~ik~~t--~~Pv~vGFGIs~~e~v~~~--~~ADGvIVGSAiV~ 234 (271)
T d1ujpa_ 159 RIATVVRHATGFVYAVSVTGVTGMRERLPEEVKDLVRRIKART--ALPVAVGFGVSGKATAAQA--AVADGVVVGSALVR 234 (271)
T ss_dssp HHHHHHTTCCSCEEEECC------------CCHHHHHHHHTTC--CSCEEEESCCCSHHHHHHH--TTSSEEEECHHHHH
T ss_pred HHHHHHHhCcchhhhhcccCccCccccchHHHHHHHHhhhccc--cCCeEEeCCCCCHHHHHHh--CCCCEEEEcHHHHH
Confidence 00 011 1223455555433 7999887799999998653 59999999999998
Q ss_pred Hhhh
Q 019244 289 SLAA 292 (344)
Q Consensus 289 ~~~~ 292 (344)
.+..
T Consensus 235 ~i~e 238 (271)
T d1ujpa_ 235 ALEE 238 (271)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 7643
|
| >d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermus thermophilus [TaxId: 274]
Probab=96.76 E-value=0.0044 Score=53.91 Aligned_cols=75 Identities=27% Similarity=0.305 Sum_probs=58.1
Q ss_pred HHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 211 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 211 ~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
+.|+...+.|+|.+.+-.-.+. ........+.+.++.+.+ .+|+...||||+-+|+.+++.+||+-|.+++..+.
T Consensus 34 ~~a~~~~~~g~dei~iiDl~~~-~~~~~~~~~~i~~i~~~~--~~pi~vgGGIrs~e~~~~ll~~Ga~kVii~s~~~~ 108 (251)
T d1ka9f_ 34 EAARAYDEAGADELVFLDISAT-HEERAILLDVVARVAERV--FIPLTVGGGVRSLEDARKLLLSGADKVSVNSAAVR 108 (251)
T ss_dssp HHHHHHHHHTCSCEEEEECCSS-TTCHHHHHHHHHHHHTTC--CSCEEEESSCCSHHHHHHHHHHTCSEEEECHHHHH
T ss_pred HHHHHHHHcCCCEEEEEecccc-cccchhHHHHHHHHHhcc--CcchheeccccCHHHHHHHHHcCCCEEEECchhhh
Confidence 5678888999999988643221 112234556777776655 79999999999999999999999999999997754
|
| >d1h1ya_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=96.70 E-value=0.012 Score=50.26 Aligned_cols=77 Identities=19% Similarity=0.295 Sum_probs=51.4
Q ss_pred CHHHHHHHHHc--CCcEEEEcc-C-CCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEch
Q 019244 209 TAEDARIAVQA--GAAGIIVSN-H-GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 284 (344)
Q Consensus 209 ~~~~a~~~~~~--G~d~I~v~~-~-gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~ 284 (344)
+.+........ -+|.|.+-+ . |......-+.+++-+.++++.. .+++|.+||||+. +.+.+...+|||.+.+|+
T Consensus 120 ~~~~~~~~l~~~~~~d~vlim~v~PG~~GQ~f~~~~l~kI~~l~~~~-~~~~I~VDGGIn~-~~i~~l~~aGad~~V~GS 197 (220)
T d1h1ya_ 120 PVEEVFPLVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKY-PSLDIEVDGGLGP-STIDVAASAGANCIVAGS 197 (220)
T ss_dssp CGGGGHHHHHSSSCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHC-TTSEEEEESSCST-TTHHHHHHHTCCEEEESH
T ss_pred chhHHHHHHhcccccceEEEEecCCCCcccccchhhhHHHHHHHhcC-CCceEEEEecCCH-HHHHHHHHCCCCEEEECH
Confidence 34555555442 367776543 1 2111223355677777776653 4799999999995 578888899999999999
Q ss_pred HHH
Q 019244 285 PVV 287 (344)
Q Consensus 285 ~~l 287 (344)
.++
T Consensus 198 ~if 200 (220)
T d1h1ya_ 198 SIF 200 (220)
T ss_dssp HHH
T ss_pred HHH
Confidence 865
|
| >d1wx0a1 c.1.10.1 (A:1-211) Decameric fructose-6-phosphate aldolase/transaldolase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Decameric fructose-6-phosphate aldolase/transaldolase species: Thermus thermophilus [TaxId: 274]
Probab=96.63 E-value=0.0066 Score=51.50 Aligned_cols=98 Identities=22% Similarity=0.172 Sum_probs=74.3
Q ss_pred HHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHc---cCCCcEEEecCCCCH
Q 019244 190 DVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRRG 266 (344)
Q Consensus 190 ~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~---~~~~~via~GGIr~g 266 (344)
.++.+++. ++++-+=.+.|..++..+.++|+++|.. .-||-.|+|......+.++++.. ..+..|++ ..+|+.
T Consensus 102 a~~~L~~~-Gi~vn~T~vfs~~Qa~~Aa~aga~yisp--yvgR~~d~g~d~~~~~~~~~~~~~~~~~~tkil~-AS~R~~ 177 (211)
T d1wx0a1 102 ACKRLSAE-GIKVNMTLIFSANQALLAARAGASYVSP--FLGRVDDISWDGGELLREIVEMIQVQDLPVKVIA-ASIRHP 177 (211)
T ss_dssp HHHHHHHT-TCCEEEEEECSHHHHHHHHHTTCSEEEE--BHHHHHHTTSCHHHHHHHHHHHHHHTTCSCEEEE-BCCCSH
T ss_pred HHHHHhhc-CCceeEEEecCHHHHHHHHHcCCCEEEE--eeecchhccccchhHHHHHHHHHHhccccceeEe-eecCCH
Confidence 45555553 8999998899999999999999999866 34554455555566666665543 23667777 559999
Q ss_pred HHHHHHHHcCCCEEEEchHHHHHhh
Q 019244 267 TDVFKALALGASGIFIGRPVVYSLA 291 (344)
Q Consensus 267 ~dv~kalalGAd~V~ig~~~l~~~~ 291 (344)
.++.+++.+|+|.+-+.-.++..+.
T Consensus 178 ~~~~~~~~~G~d~vTi~~~v~~~l~ 202 (211)
T d1wx0a1 178 RHVTEAALLGADIATMPHAVFKQLL 202 (211)
T ss_dssp HHHHHHHHTTCSEEEECHHHHHHHT
T ss_pred HHHHHHHHcCCCEEEeCHHHHHHHh
Confidence 9999999999999999988876543
|
| >d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Escherichia coli [TaxId: 562]
Probab=96.49 E-value=0.0052 Score=52.28 Aligned_cols=82 Identities=16% Similarity=0.181 Sum_probs=62.2
Q ss_pred cHHHHHHHHHhc-CCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCC
Q 019244 187 SWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 265 (344)
Q Consensus 187 ~~~~i~~i~~~~-~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~ 265 (344)
..+.|+.+++++ ++-+.+..|++.++++++.++|+++++--+. +.+.+..+.+ .++|++- |+.|
T Consensus 53 a~~~I~~l~~~~p~~~vGaGTV~~~~~~~~a~~aGa~FivSP~~----------~~~v~~~a~~---~~i~~iP--Gv~T 117 (213)
T d1wbha1 53 AVDAIRAIAKEVPEAIVGAGTVLNPQQLAEVTEAGAQFAISPGL----------TEPLLKAATE---GTIPLIP--GIST 117 (213)
T ss_dssp HHHHHHHHHHHCTTSEEEEESCCSHHHHHHHHHHTCSCEEESSC----------CHHHHHHHHH---SSSCEEE--EESS
T ss_pred HHHHHHHHHHHCCCCeeeccccccHHHHHHHHHCCCcEEECCCC----------CHHHHHHHHh---cCCCccC--CcCC
Confidence 456799999887 5778888889999999999999999965221 2233433322 2566664 7999
Q ss_pred HHHHHHHHHcCCCEEEEc
Q 019244 266 GTDVFKALALGASGIFIG 283 (344)
Q Consensus 266 g~dv~kalalGAd~V~ig 283 (344)
+.++..|+.+||+.|=+-
T Consensus 118 psEi~~A~~~G~~~vKlF 135 (213)
T d1wbha1 118 VSELMLGMDYGLKEFKFF 135 (213)
T ss_dssp HHHHHHHHHTTCCEEEET
T ss_pred HHHHHHHHHCCCCEEEec
Confidence 999999999999998653
|
| >d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Hypothetical protein HI0047 species: Haemophilus influenzae [TaxId: 727]
Probab=96.44 E-value=0.0048 Score=52.43 Aligned_cols=82 Identities=21% Similarity=0.217 Sum_probs=61.8
Q ss_pred cHHHHHHHHHhc-CCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCC
Q 019244 187 SWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 265 (344)
Q Consensus 187 ~~~~i~~i~~~~-~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~ 265 (344)
.++.|+.+++.. ++-|.+..|++.++++.+.++|+++++--+ -..+.+..+.+ .++|.+ =|+.|
T Consensus 52 a~~~I~~l~~~~p~~~vGaGTV~~~~~~~~a~~aGa~FivSP~----------~~~~v~~~a~~---~~i~~i--PGv~T 116 (212)
T d1vhca_ 52 AADAIRLLRANRPDFLIAAGTVLTAEQVVLAKSSGADFVVTPG----------LNPKIVKLCQD---LNFPIT--PGVNN 116 (212)
T ss_dssp HHHHHHHHHHHCTTCEEEEESCCSHHHHHHHHHHTCSEEECSS----------CCHHHHHHHHH---TTCCEE--CEECS
T ss_pred HHHHHHHHHhcCCCceEeeeecccHHHHHHHHhhCCcEEECCC----------CCHHHHHHHHh---cCCCcc--CCcCC
Confidence 457799998877 677888888999999999999999996421 12234433332 245554 58999
Q ss_pred HHHHHHHHHcCCCEEEEc
Q 019244 266 GTDVFKALALGASGIFIG 283 (344)
Q Consensus 266 g~dv~kalalGAd~V~ig 283 (344)
+.++.+|+.+||+.|=+-
T Consensus 117 psEi~~A~~~G~~~vK~F 134 (212)
T d1vhca_ 117 PMAIEIALEMGISAVKFF 134 (212)
T ss_dssp HHHHHHHHHTTCCEEEET
T ss_pred HHHHHHHHHCCCCEEEEc
Confidence 999999999999998653
|
| >d1oyaa_ c.1.4.1 (A:) Old yellow enzyme (OYE) {Lager yeast (Saccharomyces pastorianus) [TaxId: 27292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Old yellow enzyme (OYE) species: Lager yeast (Saccharomyces pastorianus) [TaxId: 27292]
Probab=96.36 E-value=0.011 Score=55.00 Aligned_cols=40 Identities=20% Similarity=0.129 Sum_probs=34.1
Q ss_pred HHHHccCCCcEEEecCCCCHHHHHHHHHc-CCCEEEEchHHHH
Q 019244 247 VVKATQGRIPVFLDGGVRRGTDVFKALAL-GASGIFIGRPVVY 288 (344)
Q Consensus 247 i~~~~~~~~~via~GGIr~g~dv~kalal-GAd~V~ig~~~l~ 288 (344)
+++.+ ++|||+.|||.+..++.+.+.. |||+|++||+++.
T Consensus 312 ik~~~--~~PVi~~G~i~~~~~~~~~i~~~~aDlV~~gR~lia 352 (399)
T d1oyaa_ 312 VYSIW--KGPVIRAGNFALHPEVVREEVKDKRTLIGYGRFFIS 352 (399)
T ss_dssp HHHHC--CSCEEEESSCTTCHHHHHHHTTSTTEEEECCHHHHH
T ss_pred HHHHh--CCCEEEECCCCChHHHHHHHHcCCCeEhHHHHHHHH
Confidence 44455 7999999999999998888876 5999999999985
|
| >d1vzwa1 c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Streptomyces coelicolor [TaxId: 1902]
Probab=96.30 E-value=0.0042 Score=53.57 Aligned_cols=75 Identities=25% Similarity=0.265 Sum_probs=57.8
Q ss_pred HHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 210 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
.+.|+...+.|+|.+.+..-.+.. ........+..+.+.+ .+|+...||||+-+|+.+++.+||+-|.+++..+.
T Consensus 34 ~~~a~~~~~~ga~~l~i~DLd~~~--~~~~~~~~i~~i~~~~--~~pi~vGGGIrs~~~~~~ll~~Ga~kVvi~s~~~~ 108 (239)
T d1vzwa1 34 LEAALAWQRSGAEWLHLVDLDAAF--GTGDNRALIAEVAQAM--DIKVELSGGIRDDDTLAAALATGCTRVNLGTAALE 108 (239)
T ss_dssp HHHHHHHHHTTCSEEEEEEHHHHH--TSCCCHHHHHHHHHHC--SSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHH
T ss_pred HHHHHHHHHcCCCEEEEEeecccc--cccchHHHHHHHHhhc--CcceEeecccccchhhhhhhccccccchhhHHhhh
Confidence 366788889999999986421110 1123456777777766 69999999999999999999999999999997653
|
| >d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Pseudomonas putida [TaxId: 303]
Probab=96.28 E-value=0.0043 Score=52.88 Aligned_cols=83 Identities=22% Similarity=0.225 Sum_probs=62.8
Q ss_pred cHHHHHHHHHhc-CCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCC
Q 019244 187 SWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 265 (344)
Q Consensus 187 ~~~~i~~i~~~~-~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~ 265 (344)
.++.|+.+++.+ ++-|.+..|++.++++.+.++|+++++--+ ...+.+..+.+ .++|.+ =|+.|
T Consensus 55 a~~~i~~l~~~~p~~~vGaGTV~~~~~~~~a~~aGa~FivsP~----------~~~~v~~~a~~---~~i~~i--PGv~T 119 (216)
T d1mxsa_ 55 GLKAIQVLREQRPELCVGAGTVLDRSMFAAVEAAGAQFVVTPG----------ITEDILEAGVD---SEIPLL--PGIST 119 (216)
T ss_dssp HHHHHHHHHHHCTTSEEEEECCCSHHHHHHHHHHTCSSEECSS----------CCHHHHHHHHH---CSSCEE--CEECS
T ss_pred HHHHHHHHHHhCCCcceeeeeeecHHHHHHHHhCCCCEEECCC----------CcHHHHHHHHh---cCCCcc--CCcCC
Confidence 456799999987 677888889999999999999999996421 12233433322 256555 47999
Q ss_pred HHHHHHHHHcCCCEEEEch
Q 019244 266 GTDVFKALALGASGIFIGR 284 (344)
Q Consensus 266 g~dv~kalalGAd~V~ig~ 284 (344)
+.++.+|+.+||+.|=+--
T Consensus 120 psEi~~A~~~G~~~vKlFP 138 (216)
T d1mxsa_ 120 PSEIMMGYALGYRRFKLFP 138 (216)
T ss_dssp HHHHHHHHTTTCCEEEETT
T ss_pred HHHHHHHHHCCCCEEEecc
Confidence 9999999999999997653
|
| >d1tqxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Plasmodium falciparum [TaxId: 5833]
Probab=96.11 E-value=0.045 Score=46.40 Aligned_cols=111 Identities=13% Similarity=0.124 Sum_probs=70.5
Q ss_pred HHHHHHhcCCcEEEEee--cCHHHHHHHHH-cCCcEEEEcc-C-CCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCC
Q 019244 191 VKWLQTITKLPILVKGV--LTAEDARIAVQ-AGAAGIIVSN-H-GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 265 (344)
Q Consensus 191 i~~i~~~~~~PvivK~v--~~~~~a~~~~~-~G~d~I~v~~-~-gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~ 265 (344)
++++++. ++-+.+-.. .+.+.....+. ..+|.|.+-+ . |.......+.+++-+.++++.. .++.|.+||||.
T Consensus 104 i~~i~~~-g~~~Gial~p~t~~~~~~~~l~~~~~d~vlim~V~pG~~GQ~f~~~~l~KI~~lr~~~-~~~~I~VDGGIn- 180 (221)
T d1tqxa_ 104 AKEIRDN-NLWCGISIKPKTDVQKLVPILDTNLINTVLVMTVEPGFGGQSFMHDMMGKVSFLRKKY-KNLNIQVDGGLN- 180 (221)
T ss_dssp HHHHHTT-TCEEEEEECTTSCGGGGHHHHTTTCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHC-TTCEEEEESSCC-
T ss_pred HHHHHhc-CCeEEEeeccccccccchhhcccccccEEEEEeecccccccccCcchhHHHHHHHHhc-CCcceEEEcccC-
Confidence 4555553 444433332 34455666664 4689886643 2 3222344566777777776654 478999999997
Q ss_pred HHHHHHHHHcCCCEEEEchHHHHHhhhcChHHHHHHHHHHHHHHH
Q 019244 266 GTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFE 310 (344)
Q Consensus 266 g~dv~kalalGAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~el~ 310 (344)
.+.+.+...+|||.+.+|+.++.+ +.....++.|++.++
T Consensus 181 ~~~i~~l~~aGad~iV~GS~if~~------~d~~~~i~~Lr~~i~ 219 (221)
T d1tqxa_ 181 IETTEISASHGANIIVAGTSIFNA------EDPKYVIDTMRVSVQ 219 (221)
T ss_dssp HHHHHHHHHHTCCEEEESHHHHTC------SSHHHHHHHHHHHHH
T ss_pred HHhHHHHHHcCCCEEEEChHHHCC------CCHHHHHHHHHHHHh
Confidence 467888889999999999976532 223445666666554
|
| >d1rpxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=95.87 E-value=0.086 Score=44.90 Aligned_cols=50 Identities=20% Similarity=0.322 Sum_probs=36.6
Q ss_pred hhhHHHHHHHHHHc---cCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 238 PATIMALEEVVKAT---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 238 ~~~~~~l~~i~~~~---~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
+.+++-+.++++.. ..++.|.+||||.. ..+.+...+|||.+.+|+.++.
T Consensus 160 ~~~~~kI~~~~~~~~~~~~~~~I~vDGGIn~-~~i~~l~~~Gad~~V~GS~if~ 212 (230)
T d1rpxa_ 160 ESQVKKISDLRKICAERGLNPWIEVDGGVGP-KNAYKVIEAGANALVAGSAVFG 212 (230)
T ss_dssp TTHHHHHHHHHHHHHHHTCCCEEEEESSCCT-TTHHHHHHHTCCEEEESHHHHT
T ss_pred hhhHHHHHHHHHHHHhcCCceEEEEECCcCH-HHHHHHHHcCCCEEEEChHHHC
Confidence 34555555554433 23688999999984 5788888999999999987653
|
| >d1km4a_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=95.62 E-value=0.013 Score=49.47 Aligned_cols=99 Identities=17% Similarity=0.139 Sum_probs=63.3
Q ss_pred HHHHHHHHHhcCCcEE--EEeecCH----HHHHHHHHcCCcEEEEccCCCCC---------------------CC-----
Q 019244 188 WKDVKWLQTITKLPIL--VKGVLTA----EDARIAVQAGAAGIIVSNHGARQ---------------------LD----- 235 (344)
Q Consensus 188 ~~~i~~i~~~~~~Pvi--vK~v~~~----~~a~~~~~~G~d~I~v~~~gG~~---------------------~~----- 235 (344)
.+.|+++++.++.||+ .|..--+ ..++.+.++|+|.++|...+|.. +.
T Consensus 43 ~~~v~~l~~~~~~~i~~D~K~~DIg~t~~~~~~~~~~~gad~~TVh~~~g~~~i~~~~~~a~~~~~~~~~l~~~s~~~~~ 122 (212)
T d1km4a_ 43 MDIIAEFRKRFGCRIIADFAVADIPETNEKICRATFKAGADAIIVHGFPGADSVRACLNVAEEMGREVFLLTEMSHPGAE 122 (212)
T ss_dssp THHHHHHHHHHCCEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEESTTCHHHHHHHHHHHHHHTCEEEEECSCSSGGGG
T ss_pred HHHHHHHHHhcccceehhhhhhccccHHHHhHhhhccccccEEEEeccCChHHHHHHHHHHHhcCCccccchhhcchhhh
Confidence 3568888888888887 4665322 33667789999999998766631 00
Q ss_pred -----------------------CchhhHHHHHHHHHHccCCCcEEEecCCCCH-HHHHHHHHcCCCEEEEchHHHH
Q 019244 236 -----------------------YVPATIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 236 -----------------------~g~~~~~~l~~i~~~~~~~~~via~GGIr~g-~dv~kalalGAd~V~ig~~~l~ 288 (344)
.+....+.+..+++..+ +-.++.++||+.- .+..+++ -|||.+.+||+++.
T Consensus 123 ~~~~~~~~~~~~~~~~~g~~g~v~~~~~~~~i~~ir~~~~-~~~~~vtpGI~~~g~~~~d~~-~~ad~iIvGR~I~~ 197 (212)
T d1km4a_ 123 MFIQGAADEIARMGVDLGVKNYVGPSTRPERLSRLREIIG-QDSFLISPGVGAQGGDPGETL-RFADAIIVGRSIYL 197 (212)
T ss_dssp TTHHHHHHHHHHHHHHHTCCEEECCTTCHHHHHHHHHHHC-SSSEEEECCBSTTSBCHHHHT-TTCSEEEECHHHHT
T ss_pred hhhhhHHHHHHHHHHHhCCccccccccCHHHHhhhhhccC-CceeEEcCccccCCCCHHHHH-hhCCEEEECchhcc
Confidence 01112233444454443 4457789999843 3333333 58999999999875
|
| >d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.53 E-value=0.033 Score=49.07 Aligned_cols=91 Identities=20% Similarity=0.315 Sum_probs=60.9
Q ss_pred HHHHHcCCcEEEEccCCCCCCCCchh-hHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHcCCCEEEEchHHHH
Q 019244 214 RIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVVY 288 (344)
Q Consensus 214 ~~~~~~G~d~I~v~~~gG~~~~~g~~-~~~~l~~i~~~~~~~~~via~GGIr~g~dv~k----alalGAd~V~ig~~~l~ 288 (344)
+.+.+.|+++|.+.++.|-...-... -.+.+..+.+.+++++|+++.-|=.+..++++ |..+|||++++..|+++
T Consensus 35 ~~li~~Gv~Gi~v~G~tGE~~~Ls~eEr~~l~~~~~~~~~~~~~vi~g~~~~s~~~~i~~a~~a~~~Gad~v~i~~P~~~ 114 (296)
T d1xxxa1 35 NHLVDQGCDGLVVSGTTGESPTTTDGEKIELLRAVLEAVGDRARVIAGAGTYDTAHSIRLAKACAAEGAHGLLVVTPYYS 114 (296)
T ss_dssp HHHHHTTCSEEEESSTTTTTTTSCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSS
T ss_pred HHHHHcCCCEEEECeeccchhhCCHHHHHHHHHHHHHHhccccceEeccccchhHHHHHHHHHHHHhcCCeEEEEeccCC
Confidence 45788999999997765532221221 23445555666677899998777777777664 34579999999999876
Q ss_pred HhhhcChHHHHHHHHHHHH
Q 019244 289 SLAAEGEKGVRRVLEMLRE 307 (344)
Q Consensus 289 ~~~~~G~~~v~~~l~~l~~ 307 (344)
. .+.+++.++++.+.+
T Consensus 115 ~---~~~~~l~~~~~~v~~ 130 (296)
T d1xxxa1 115 K---PPQRGLQAHFTAVAD 130 (296)
T ss_dssp C---CCHHHHHHHHHHHHT
T ss_pred C---CCHHHHHHHHHHHHH
Confidence 4 245566665555443
|
| >d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Bacillus anthracis [TaxId: 1392]
Probab=95.50 E-value=0.036 Score=48.58 Aligned_cols=90 Identities=14% Similarity=0.304 Sum_probs=59.3
Q ss_pred HHHHHHcCCcEEEEccCCCCCCCCch-hhHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHcCCCEEEEchHHH
Q 019244 213 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 287 (344)
Q Consensus 213 a~~~~~~G~d~I~v~~~gG~~~~~g~-~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~k----alalGAd~V~ig~~~l 287 (344)
++.+.+.|++++.+.++-|-...-.. .-.+.+..+.+..++++||++.-|=.+..++++ |..+|||++++..|++
T Consensus 30 i~~l~~~Gv~gl~~~G~tGE~~~Ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~Gad~ilv~pP~~ 109 (292)
T d1xkya1 30 VNYLIDNGTTAIVVGGTTGESPTLTSEEKVALYRHVVSVVDKRVPVIAGTGSNNTHASIDLTKKATEVGVDAVMLVAPYY 109 (292)
T ss_dssp HHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCS
T ss_pred HHHHHHCCCCEEEECeEccchhhCCHHHHHHHHHHHHHHhCCCceEEEecCcccHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 34567899999999765543211111 123445566666677899999877777777654 4458999999999987
Q ss_pred HHhhhcChHHHHHHHHHH
Q 019244 288 YSLAAEGEKGVRRVLEML 305 (344)
Q Consensus 288 ~~~~~~G~~~v~~~l~~l 305 (344)
+.. .++++.++++.+
T Consensus 110 ~~~---s~~~i~~~~~~v 124 (292)
T d1xkya1 110 NKP---SQEGMYQHFKAI 124 (292)
T ss_dssp SCC---CHHHHHHHHHHH
T ss_pred CCC---CHHHHHHHHHHH
Confidence 642 345555555443
|
| >d2a6na1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Escherichia coli [TaxId: 562]
Probab=95.50 E-value=0.033 Score=48.95 Aligned_cols=93 Identities=15% Similarity=0.235 Sum_probs=64.4
Q ss_pred HHHHHHcCCcEEEEccCCCCCCCCchh-hHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHH----cCCCEEEEchHHH
Q 019244 213 ARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA----LGASGIFIGRPVV 287 (344)
Q Consensus 213 a~~~~~~G~d~I~v~~~gG~~~~~g~~-~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kala----lGAd~V~ig~~~l 287 (344)
++.+.+.|++++.+.|+-|-...-... -.+.+..+.+...+++||++..|=.+..++++... +|||++++..|++
T Consensus 28 i~~l~~~Gv~Gl~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~g~~~~s~~~~i~~~~~a~~~Gad~~~~~pP~~ 107 (292)
T d2a6na1 28 IDYHVASGTSAIVSVGTTGESATLNHDEHADVVMMTLDLADGRIPVIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYY 107 (292)
T ss_dssp HHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHTTTTSSCCEEEEECCCS
T ss_pred HHHHHHcCCCEEEECeeccchhhCCHHHHHHHhhhhhhhccccceeEeecccchHHHHHHHhccHHhcCCcceeccCCCC
Confidence 455778999999998765532111111 23455566667777899999988888888886654 6999999999987
Q ss_pred HHhhhcChHHHHHHHHHHHHH
Q 019244 288 YSLAAEGEKGVRRVLEMLREE 308 (344)
Q Consensus 288 ~~~~~~G~~~v~~~l~~l~~e 308 (344)
+.. ..+++.++++.+.+.
T Consensus 108 ~~~---~~~~i~~~f~~v~~~ 125 (292)
T d2a6na1 108 NRP---SQEGLYQHFKAIAEH 125 (292)
T ss_dssp SCC---CHHHHHHHHHHHHHT
T ss_pred CCC---CHHHHHHHHHHHhhc
Confidence 642 456666666655443
|
| >d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]
Probab=95.41 E-value=0.012 Score=53.08 Aligned_cols=77 Identities=22% Similarity=0.250 Sum_probs=55.6
Q ss_pred HHHHHHHHHcCCcEEEEccCCCCC--CCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHH-----------HHHHHHcC
Q 019244 210 AEDARIAVQAGAAGIIVSNHGARQ--LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD-----------VFKALALG 276 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~~gG~~--~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~d-----------v~kalalG 276 (344)
.+.|+...+.|||.|.+-.--+.. ...-.+.++.+.++.+.+ .+||-+.|||||-+| +.+.+.+|
T Consensus 51 ~~~a~~~~~~gaDeL~ivDidas~~~~~~~~~~~~~I~~i~~~~--~vPi~vGGGIrsi~di~~~~~~~~e~A~~ll~~G 128 (323)
T d1jvna1 51 VQLAQKYYQQGADEVTFLNITSFRDCPLKDTPMLEVLKQAAKTV--FVPLTVGGGIKDIVDVDGTKIPALEVASLYFRSG 128 (323)
T ss_dssp HHHHHHHHHTTCSEEEEEEEC---CCCGGGCHHHHHHHHHTTTC--CSCEEEESSCSCEECTTCCEECHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCCEEEEEECcCCCCCcCCCchHHHHHHhhcccc--ceeEEEecCcccHHHhhhccchhhHHHHHHHHcC
Confidence 467888999999999874311110 000123456677766544 799999999999776 47889999
Q ss_pred CCEEEEchHHHH
Q 019244 277 ASGIFIGRPVVY 288 (344)
Q Consensus 277 Ad~V~ig~~~l~ 288 (344)
||-|.+++.++.
T Consensus 129 adKVvI~T~ai~ 140 (323)
T d1jvna1 129 ADKVSIGTDAVY 140 (323)
T ss_dssp CSEEEECHHHHH
T ss_pred CCeEEechHHhh
Confidence 999999998875
|
| >d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase, central and FMN domains {Azospirillum brasilense [TaxId: 192]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Alpha subunit of glutamate synthase, central and FMN domains species: Azospirillum brasilense [TaxId: 192]
Probab=95.38 E-value=0.064 Score=53.23 Aligned_cols=117 Identities=13% Similarity=0.101 Sum_probs=84.9
Q ss_pred HHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHc-----cCCCcEEE-ecCCCCHHHHHHHHHcCCCEEEEch
Q 019244 211 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT-----QGRIPVFL-DGGVRRGTDVFKALALGASGIFIGR 284 (344)
Q Consensus 211 ~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~-----~~~~~via-~GGIr~g~dv~kalalGAd~V~ig~ 284 (344)
++|..+++.|+..|++|..+-..-....|.+-++..+..++ +.++.||+ +|-+|+.-|++-.+-.||++|.
T Consensus 169 ~eA~~AV~~G~~ilILSDr~~~~~~~~IP~LLAv~aVHh~Lir~gLR~~~sIIveSGeare~Hh~A~LiGyGA~AV~--- 245 (771)
T d1ea0a2 169 QETEDAVRGGATHVILTDEAMGPARAAIPAILATGAVHTHLIRSNLRTFTSLNVRTAEGLDTHYFAVLIGVGATTVN--- 245 (771)
T ss_dssp HHHHHHHHHTCCEEEEECTTCBTTEEECCHHHHHHHHHHHHHTTTCGGGCEEEEECSSCCSHHHHHHHHTTTCSEEE---
T ss_pred HHHHHHHhCCCcEEEEeccccccchhhhHHHHHHHHHHHHHHHcCCCccceeEEeehhhhhhhhhhheeeccccccC---
Confidence 44778899999999999754221112345555555554443 34677777 7889999999999999999996
Q ss_pred HHHH-----Hhhhc-------ChHHHHHHHHHHHHHHHHHHHHhCCCCHhhhccccee
Q 019244 285 PVVY-----SLAAE-------GEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIV 330 (344)
Q Consensus 285 ~~l~-----~~~~~-------G~~~v~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l~ 330 (344)
|++- .+... -++.+.++.+.+.++|...|..+|..+++.-++..+.
T Consensus 246 PYLa~e~i~~~~~~~~~~~~~~~~a~~ny~kAi~kGLlKIMSKMGIStl~SY~GaqiF 303 (771)
T d1ea0a2 246 AYLAQEAIAERHRRGLFGSMPLEKGMANYKKAIDDGLLKIMSKMGISVISSYRGGGNF 303 (771)
T ss_dssp CHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCHHHHTTSCCE
T ss_pred hHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHhhhh
Confidence 4431 11111 1457889999999999999999999999998877554
|
| >d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Salmonella typhimurium [TaxId: 90371]
Probab=95.33 E-value=0.039 Score=48.24 Aligned_cols=41 Identities=29% Similarity=0.327 Sum_probs=36.2
Q ss_pred HHHHHHHHHhcCCcEEEEe-ecCHHHHHHHHHcCCcEEEEcc
Q 019244 188 WKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSN 228 (344)
Q Consensus 188 ~~~i~~i~~~~~~PvivK~-v~~~~~a~~~~~~G~d~I~v~~ 228 (344)
-+.++++|+.+++||+|.. +.+++++.++.+.|+|+++|+.
T Consensus 194 ~~~i~~ik~~t~~Pv~vGFGI~~~e~v~~~~~~~ADGvIVGS 235 (267)
T d1qopa_ 194 HHLIEKLKEYHAAPALQGFGISSPEQVSAAVRAGAAGAISGS 235 (267)
T ss_dssp HHHHHHHHHTTCCCEEEESSCCSHHHHHHHHHTTCSEEEECH
T ss_pred HHHHHHHhhhccCCceeecccCCHHHHHHHHhcCCCEEEECH
Confidence 4569999999999999986 5789999999999999999953
|
| >d1tqja_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=95.20 E-value=0.094 Score=44.33 Aligned_cols=50 Identities=20% Similarity=0.357 Sum_probs=36.5
Q ss_pred hhhHHHHHHHHHHc---cCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 238 PATIMALEEVVKAT---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 238 ~~~~~~l~~i~~~~---~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
+.+++-+.++++.. ..++.|.+||||.. +.+-+...+|||.+.+|+.++.
T Consensus 152 ~~~~~ki~~l~~~~~~~~~~~~I~VDGGIn~-~~i~~l~~~Gad~~V~GS~if~ 204 (221)
T d1tqja_ 152 PEVLPKIRALRQMCDERGLDPWIEVDGGLKP-NNTWQVLEAGANAIVAGSAVFN 204 (221)
T ss_dssp GGGHHHHHHHHHHHHHHTCCCEEEEESSCCT-TTTHHHHHHTCCEEEESHHHHT
T ss_pred hhhHHHHHHHHhhhhccccceEEEEECCcCH-HHHHHHHHcCCCEEEEChHHhC
Confidence 44555555555443 33688999999984 4677788899999999987653
|
| >d1viza_ c.1.4.1 (A:) PcrB protein homolog YerE {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: PcrB protein homolog YerE species: Bacillus subtilis [TaxId: 1423]
Probab=95.03 E-value=0.057 Score=45.94 Aligned_cols=45 Identities=20% Similarity=0.273 Sum_probs=35.4
Q ss_pred HHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 242 MALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 242 ~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
+.+..+.+.. .++||+.-+||++++++.+ ++.|||+|.+|+++..
T Consensus 170 ~~~~~v~~~~-~~~Pl~VGFGIst~e~a~~-v~~~ADgVVVGSAiv~ 214 (229)
T d1viza_ 170 EAVKKTKAVL-ETSTLFYGGGIKDAETAKQ-YAEHADVIVVGNAVYE 214 (229)
T ss_dssp HHHHHHHHTC-SSSEEEEESSCCSHHHHHH-HHTTCSEEEECTHHHH
T ss_pred hhHHHHHhhc-cCcceEEEcccCCHHHHHH-HHcCCCEEEECHHHHh
Confidence 4444454443 4799999999999999966 5579999999999865
|
| >d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=94.98 E-value=0.057 Score=45.17 Aligned_cols=82 Identities=22% Similarity=0.123 Sum_probs=58.7
Q ss_pred cHHHHHHHHHhc--CCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCC
Q 019244 187 SWKDVKWLQTIT--KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 264 (344)
Q Consensus 187 ~~~~i~~i~~~~--~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr 264 (344)
.++.|+.+++.. ++-|.+..+.+.++++.+.++|+++++- .|. +.+.+..+.+. .+|++ =|+.
T Consensus 47 a~~~i~~l~~~~~~~~~vGaGTV~~~~~~~~a~~aGa~fivs---P~~-------~~~v~~~~~~~---~i~~i--PGv~ 111 (202)
T d1wa3a1 47 ADTVIKELSFLKEKGAIIGAGTVTSVEQCRKAVESGAEFIVS---PHL-------DEEISQFCKEK---GVFYM--PGVM 111 (202)
T ss_dssp HHHHHHHTHHHHHTTCEEEEESCCSHHHHHHHHHHTCSEEEC---SSC-------CHHHHHHHHHH---TCEEE--CEEC
T ss_pred HHHHHHHHHHhcCCCcEEEecccccHHHHHHHHhhcccEEeC---CCC-------cHHHHHHHHhc---CCcee--CCcC
Confidence 356688877543 4556777789999999999999999952 111 22344433322 45444 5899
Q ss_pred CHHHHHHHHHcCCCEEEEc
Q 019244 265 RGTDVFKALALGASGIFIG 283 (344)
Q Consensus 265 ~g~dv~kalalGAd~V~ig 283 (344)
|+.++.+|+.+|++.+-+-
T Consensus 112 TpsEi~~A~~~G~~~lK~f 130 (202)
T d1wa3a1 112 TPTELVKAMKLGHTILKLF 130 (202)
T ss_dssp SHHHHHHHHHTTCCEEEET
T ss_pred cHHHHHHHHHCCCCEEEec
Confidence 9999999999999999764
|
| >d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]
Probab=94.97 E-value=0.035 Score=51.23 Aligned_cols=69 Identities=12% Similarity=0.209 Sum_probs=53.3
Q ss_pred HHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEch
Q 019244 210 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 284 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~ 284 (344)
.+-+..+.++|+|.|+++..-|+ .....+.+..+++.. .++|||+ |++-|.+-+...+..|||+|-+|-
T Consensus 153 ~~ra~~L~~aG~D~ivID~AhG~----s~~~~~~i~~ik~~~-~~v~vIa-GNV~T~e~a~~L~~~GaD~VkVGi 221 (388)
T d1eepa_ 153 IERVEELVKAHVDILVIDSAHGH----STRIIELIKKIKTKY-PNLDLIA-GNIVTKEAALDLISVGADCLKVGI 221 (388)
T ss_dssp HHHHHHHHHTTCSEEEECCSCCS----SHHHHHHHHHHHHHC-TTCEEEE-EEECSHHHHHHHHTTTCSEEEECS
T ss_pred HHHHHHHHhhccceeeeeccccc----hHHHHHHHHHHHHHC-CCCceee-ccccCHHHHHHHHhcCCCeeeecc
Confidence 46688899999999999874343 123456677776654 4788766 889999999999999999998773
|
| >d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.87 E-value=0.048 Score=47.09 Aligned_cols=39 Identities=21% Similarity=0.255 Sum_probs=35.2
Q ss_pred HHHHHHHHhcCCcEEEEe-ecCHHHHHHHHHcCCcEEEEc
Q 019244 189 KDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVS 227 (344)
Q Consensus 189 ~~i~~i~~~~~~PvivK~-v~~~~~a~~~~~~G~d~I~v~ 227 (344)
+.++++|+.+++|+.|.. +.++|+++.+.+.|+|+++|.
T Consensus 181 ~~v~~vk~~t~~Pv~vGFGI~~~e~v~~~~~~~ADGvIVG 220 (248)
T d1geqa_ 181 DLLRRAKRICRNKVAVGFGVSKREHVVSLLKEGANGVVVG 220 (248)
T ss_dssp HHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHhhhcccceeeecccCCHHHHHHHHhcCCCEEEEC
Confidence 469999999999999986 478999999999999999994
|
| >d1eixa_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Escherichia coli [TaxId: 562]
Probab=94.87 E-value=0.041 Score=46.77 Aligned_cols=43 Identities=21% Similarity=0.085 Sum_probs=30.2
Q ss_pred HHHHHHHHHhcCCcEEE--EeecCH----HHHHHHHHcCCcEEEEccCCC
Q 019244 188 WKDVKWLQTITKLPILV--KGVLTA----EDARIAVQAGAAGIIVSNHGA 231 (344)
Q Consensus 188 ~~~i~~i~~~~~~Pviv--K~v~~~----~~a~~~~~~G~d~I~v~~~gG 231 (344)
.+.|+++++ .+.+++. |..-.+ ..++.+.+.|+|.++|.+.+|
T Consensus 44 ~~~i~~l~~-~~~~if~D~K~~DI~nt~~~~~~~~~~~~~~~~tvh~~~g 92 (231)
T d1eixa_ 44 PQFVRELQQ-RGFDIFLDLKFHDIPNTAAHAVAAAADLGVWMVNVHASGG 92 (231)
T ss_dssp HHHHHHHHH-TTCCEEEEEEECSCHHHHHHHHHHHHHHTCSEEEEBGGGC
T ss_pred HHHHHHHHh-cCchhhHhhHhhcCcHHHHHHHHhhhcccceEEEEeccCc
Confidence 356888877 4667654 554322 356788899999999987666
|
| >d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Thermotoga maritima [TaxId: 2336]
Probab=94.78 E-value=0.051 Score=47.58 Aligned_cols=90 Identities=18% Similarity=0.306 Sum_probs=57.7
Q ss_pred HHHHHHHcCCcEEEEccCCCCCCCCchh-hHHHHHHHHHHccCCCcEEEecCCCCHHHHHHH----HHcCCCEEEEchHH
Q 019244 212 DARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKA----LALGASGIFIGRPV 286 (344)
Q Consensus 212 ~a~~~~~~G~d~I~v~~~gG~~~~~g~~-~~~~l~~i~~~~~~~~~via~GGIr~g~dv~ka----lalGAd~V~ig~~~ 286 (344)
.++.+.+.|+++|.+.|+.|-...-... -.+.+..+.+...+++|||+.-|=.+-.++++. -.+|||++++..|+
T Consensus 27 ~i~~l~~~Gv~Gi~v~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~st~~ai~~a~~A~~~Gad~v~v~pP~ 106 (295)
T d1o5ka_ 27 LVRYQLENGVNALIVLGTTGESPTVNEDEREKLVSRTLEIVDGKIPVIVGAGTNSTEKTLKLVKQAEKLGANGVLVVTPY 106 (295)
T ss_dssp HHHHHHHTTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred HHHHHHHcCCCEEEECeeccchhhCCHHHHHHHhhhhccccccCCceEeecccccHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 3456788999999997654421111111 223455555566678999998887777776643 34799999999997
Q ss_pred HHHhhhcChHHHHHHHHH
Q 019244 287 VYSLAAEGEKGVRRVLEM 304 (344)
Q Consensus 287 l~~~~~~G~~~v~~~l~~ 304 (344)
++.. ..+++.++++.
T Consensus 107 y~~~---s~~~i~~~~~~ 121 (295)
T d1o5ka_ 107 YNKP---TQEGLYQHYKY 121 (295)
T ss_dssp SSCC---CHHHHHHHHHH
T ss_pred CCCC---CHHHHHHHHHH
Confidence 6531 34444444444
|
| >d1ofda2 c.1.4.1 (A:431-1239) Alpha subunit of glutamate synthase, central and FMN domains {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Alpha subunit of glutamate synthase, central and FMN domains species: Synechocystis sp. [TaxId: 1143]
Probab=94.74 E-value=0.12 Score=51.40 Aligned_cols=117 Identities=15% Similarity=0.152 Sum_probs=84.4
Q ss_pred HHHHHHHHcCCcEEEEccCC-CCCCCC---chhhHHHHHHHHHH-----ccCCCcEEE-ecCCCCHHHHHHHHHcCCCEE
Q 019244 211 EDARIAVQAGAAGIIVSNHG-ARQLDY---VPATIMALEEVVKA-----TQGRIPVFL-DGGVRRGTDVFKALALGASGI 280 (344)
Q Consensus 211 ~~a~~~~~~G~d~I~v~~~g-G~~~~~---g~~~~~~l~~i~~~-----~~~~~~via-~GGIr~g~dv~kalalGAd~V 280 (344)
++|..+++.|+..|++|..+ |...+. ..|.+-++..+..+ ++.++.|++ +|-+|+.-|++-.+-.||++|
T Consensus 155 ~ea~~AV~~G~~ilILSDR~~~~~i~~~~~~IP~lLAv~AVH~~Lir~gLR~~~sLVveSGe~revHh~A~LiGyGA~AV 234 (809)
T d1ofda2 155 KTAIATVQAGAEILVLTDRPNGAILTENQSFIPPLLAVGAVHHHLIRAGLRLKASLIVDTAQCWSTHHFACLVGYGASAI 234 (809)
T ss_dssp HHHHHHHHTTCSEEEEESSGGGCCCCTTEEECCHHHHHHHHHHHHHHTTCGGGCEEEEECSSCCSHHHHHHHHHTTCSEE
T ss_pred HHHHHHHHCCCcEEEEeccccccccCCCccchhHHHHHHHHHHHHHHcCCCceeeeeeehHHHHHHHHhHHHHhccHHHH
Confidence 44778899999999999865 221221 23555555444433 344677777 889999999999999999999
Q ss_pred EEchHHHH-H----h---------hhc-------ChHHHHHHHHHHHHHHHHHHHHhCCCCHhhhccccee
Q 019244 281 FIGRPVVY-S----L---------AAE-------GEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIV 330 (344)
Q Consensus 281 ~ig~~~l~-~----~---------~~~-------G~~~v~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l~ 330 (344)
. |+|- . + ... -++.+.++.+.+.++|...|..+|..+++.-++..+.
T Consensus 235 n---PYLA~eti~~~~~~~~~~~~~~~~~~~~~~~~~a~~Ny~kAi~kGLLKIMSKMGISTl~SYrGaqiF 302 (809)
T d1ofda2 235 C---PYLALESVRQWWLDEKTQKLMENGRLDRIDLPTALKNYRQSVEAGLFKILSKMGISLLASYHGAQIF 302 (809)
T ss_dssp E---CHHHHHHHHHHHSCHHHHHHHTTSSCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCCBHHHHHTCCCE
T ss_pred h---HHHHHHHHHHHhhhhhhhhhhhccCcccCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccchh
Confidence 7 4431 1 1 011 1356889999999999999999999999988876554
|
| >d1xm3a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: ThiG-like family: ThiG-like domain: Thiazole biosynthesis protein ThiG species: Bacillus subtilis [TaxId: 1423]
Probab=94.65 E-value=0.16 Score=43.27 Aligned_cols=113 Identities=21% Similarity=0.304 Sum_probs=72.6
Q ss_pred HHHHHHHHHcCC-cc-----------ccCCHHHHHHHHHHHHHcCCcEEEeccCCccccccHHHHHhhcCCCCccccccc
Q 019244 91 YATARAASAAGT-IM-----------VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNF 158 (344)
Q Consensus 91 ~~lA~aA~~~g~-~~-----------~~~d~~~~~~~i~~a~~ag~~~l~~tvd~~~~g~r~~~~~~~~~~~~g~~~~~~ 158 (344)
..+|+-|++.+- -. ++-|+..+-+--+...+-||.++..+-|.|.+..|-.+.--..-+|.|-...
T Consensus 81 vr~A~lARE~~~t~~IKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~VlpY~~~D~v~ak~Le~~Gc~avMPlgsPIG-- 158 (251)
T d1xm3a_ 81 VRIARLAKASGLCDMIKVEVIGCSRSLLPDPVETLKASEQLLEEGFIVLPYTSDDVVLARKLEELGVHAIMPGASPIG-- 158 (251)
T ss_dssp HHHHHHHHHTTCCSSEEECCBCCTTTCCBCHHHHHHHHHHHHHTTCCEEEEECSCHHHHHHHHHHTCSCBEECSSSTT--
T ss_pred HHHHHHHHHhcCCceEEEEEecCCCCcCCCHHHHHHHHHHHHhCCcEEEEecCCCHHHHHHHHHcCChhHHHhhhhhh--
Confidence 457777777643 22 2345544444445555789999988888888776654431000012111000
Q ss_pred ccccccccccccchhhHHHHhhcCCCCCcHHHHHHHHHhcCCcEEEEe-ecCHHHHHHHHHcCCcEEEEc
Q 019244 159 QGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVS 227 (344)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~PvivK~-v~~~~~a~~~~~~G~d~I~v~ 227 (344)
.+.+-.+...|+.|++..++||||-. +-++.+|.++.+.|+|+|-+-
T Consensus 159 ----------------------Sg~Gl~n~~~l~~i~~~~~vPvIvDAGIG~pSdAa~AMElG~daVLvN 206 (251)
T d1xm3a_ 159 ----------------------SGQGILNPLNLSFIIEQAKVPVIVDAGIGSPKDAAYAMELGADGVLLN 206 (251)
T ss_dssp ----------------------CCCCCSCHHHHHHHHHHCSSCBEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred ----------------------cCCCcCChHHHHHHHhcCCccEEEecCCCCHHHHHHHHHccCCEEEec
Confidence 01122356789999999999999864 579999999999999999874
|
| >d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=94.55 E-value=0.093 Score=47.80 Aligned_cols=68 Identities=15% Similarity=0.226 Sum_probs=52.6
Q ss_pred HHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 019244 210 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 283 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig 283 (344)
.+.+..+.++|+|.|+++...|+ .......+.++++.. .+++|| .|.|-|.+.+.+.+..|||+|-+|
T Consensus 109 ~er~~~l~~agvd~ivID~A~G~----s~~~~~~i~~ik~~~-~~~~iI-aGNV~T~e~a~~L~~aGaD~VkVG 176 (365)
T d1zfja1 109 FERAEALFEAGADAIVIDTAHGH----SAGVLRKIAEIRAHF-PNRTLI-AGNIATAEGARALYDAGVDVVKVG 176 (365)
T ss_dssp HHHHHHHHHHTCSEEEECCSCTT----CHHHHHHHHHHHHHC-SSSCEE-EEEECSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHcCCCEEEEECCccc----ccchhHHHHHHHhhC-CCccee-ecccccHHHHHHHHhcCCceEEee
Confidence 36688899999999999864442 123345667776655 467887 499999999999999999998877
|
| >d1qo2a_ c.1.2.1 (A:) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Thermotoga maritima [TaxId: 2336]
Probab=94.40 E-value=0.035 Score=47.54 Aligned_cols=75 Identities=17% Similarity=0.166 Sum_probs=52.2
Q ss_pred HHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 210 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
.+.|+...+.|+|.+.+-.--+. ....+.....+..+.+ . .+|+-..|||+|.+|+.+.+..||+-|.+++.++.
T Consensus 33 ~~~a~~~~~~g~~~l~ivDLda~-~~~~~~~~~~~~~~~~-~--~~pl~~gGGI~s~~~~~~~~~~Ga~kVvi~s~~~~ 107 (241)
T d1qo2a_ 33 VELVEKLIEEGFTLIHVVDLSNA-IENSGENLPVLEKLSE-F--AEHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVLE 107 (241)
T ss_dssp HHHHHHHHHTTCCCEEEEEHHHH-HHCCCTTHHHHHHGGG-G--GGGEEEESSCCSHHHHHHHHHTTCCEEEECHHHHH
T ss_pred HHHHHHHHHCCCCEEEEEecccc-cccCCcchhheehhcc-c--ccchhhhhhhhhhhhhhhccccccceEecCccccc
Confidence 36788888999999977531000 0011222233333322 2 47999999999999999999999999999997654
|
| >d2f6ua1 c.1.4.1 (A:1001-1231) (S)-3-O-geranylgeranylglyceryl phosphate synthase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: (S)-3-O-geranylgeranylglyceryl phosphate synthase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=94.04 E-value=0.04 Score=46.91 Aligned_cols=46 Identities=22% Similarity=0.277 Sum_probs=36.5
Q ss_pred HHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 241 IMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 241 ~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
.+.+..+++.+ .++||+.-+||+|++++.++. -+||+|.+|+.+..
T Consensus 175 ~~~~~~~~k~~-~~~Pv~VGFGI~s~e~a~~~~-~~ADgvIVGSaive 220 (231)
T d2f6ua1 175 PELVAEVKKVL-DKARLFYGGGIDSREKAREML-RYADTIIVGNVIYE 220 (231)
T ss_dssp HHHHHHHHHHC-SSSEEEEESCCCSHHHHHHHH-HHSSEEEECHHHHH
T ss_pred hhHHHHHHHhc-CCCCEEEEeCcCCHHHHHHHH-hcCCEEEEChHHhc
Confidence 34455555554 479999999999999997765 48999999999864
|
| >d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Thermotoga maritima [TaxId: 2336]
Probab=93.38 E-value=0.15 Score=45.70 Aligned_cols=68 Identities=22% Similarity=0.290 Sum_probs=50.9
Q ss_pred HHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 019244 210 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 283 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig 283 (344)
.+.+..+.++|+|.++++...|+ .....+.+..+++.. .+++||+ |.+.+...+.+.+..|||+|-+|
T Consensus 100 ~e~~~~li~agvd~ivId~A~G~----~~~~~~~ik~ik~~~-~~~~via-GnV~t~~~a~~l~~~GaD~v~VG 167 (330)
T d1vrda1 100 MERVEKLVKAGVDVIVIDTAHGH----SRRVIETLEMIKADY-PDLPVVA-GNVATPEGTEALIKAGADAVKVG 167 (330)
T ss_dssp HHHHHHHHHTTCSEEEECCSCCS----SHHHHHHHHHHHHHC-TTSCEEE-EEECSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHCCCCEEEEecCCCC----chhHHHHHHHHHHhC-CCCCEEe-echhHHHHHHHHHHcCCCEEeec
Confidence 46678899999999999864443 123445677776654 3677666 88999999988889999999775
|
| >d1hl2a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: N-acetylneuraminate lyase species: Escherichia coli [TaxId: 562]
Probab=93.13 E-value=0.2 Score=43.59 Aligned_cols=92 Identities=15% Similarity=0.204 Sum_probs=57.8
Q ss_pred HHHHHHcCCcEEEEccCCCCCCCCchh-hHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHcCCCEEEEchHHH
Q 019244 213 ARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 287 (344)
Q Consensus 213 a~~~~~~G~d~I~v~~~gG~~~~~g~~-~~~~l~~i~~~~~~~~~via~GGIr~g~dv~k----alalGAd~V~ig~~~l 287 (344)
++.+.+.|+++|.+.++.|-...-... -.+.+..+++.+.+++|+++.-|=.+-.++.+ +-.+|||++++..|++
T Consensus 29 i~~l~~~Gv~gi~~~G~tGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~~s~~~~i~~a~~a~~~Gad~~~v~~p~~ 108 (295)
T d1hl2a_ 29 VQFNIQQGIDGLYVGGSTGEAFVQSLSEREQVLEIVAEEAKGKIKLIAHVGCVSTAESQQLAASAKRYGFDAVSAVTPFY 108 (295)
T ss_dssp HHHHHHHTCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECCCS
T ss_pred HHHHHHcCCCEEEECeEccchhhCCHHHHHHHHhhhHHhhccccceeeccccchhhHHHHHHHHHHhcCCceeeeeeccc
Confidence 345678899999997765532211111 23445555666677899998666566666654 3347999999999987
Q ss_pred HHhhhcChHHHHHHHHHHHH
Q 019244 288 YSLAAEGEKGVRRVLEMLRE 307 (344)
Q Consensus 288 ~~~~~~G~~~v~~~l~~l~~ 307 (344)
+.. ..+++.+++..+.+
T Consensus 109 ~~~---~~~~~~~~~~~~~~ 125 (295)
T d1hl2a_ 109 YPF---SFEEHCDHYRAIID 125 (295)
T ss_dssp SCC---CHHHHHHHHHHHHH
T ss_pred cCC---ChHHHHHHHHHHhc
Confidence 632 34555555544443
|
| >d2p10a1 c.1.12.9 (A:8-204) Uncharacterized protein Mll9387 {Mesorhizobium loti [TaxId: 381]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Mll9387-like domain: Uncharacterized protein Mll9387 species: Mesorhizobium loti [TaxId: 381]
Probab=93.05 E-value=0.15 Score=42.26 Aligned_cols=93 Identities=16% Similarity=0.115 Sum_probs=57.6
Q ss_pred HHHHHHHhc--CCcEEEEeecCHHHHHHHHHcCCcEEEEccCC-----CCCCCCchh-----hHHHHHHHHHHcc--CCC
Q 019244 190 DVKWLQTIT--KLPILVKGVLTAEDARIAVQAGAAGIIVSNHG-----ARQLDYVPA-----TIMALEEVVKATQ--GRI 255 (344)
Q Consensus 190 ~i~~i~~~~--~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~g-----G~~~~~g~~-----~~~~l~~i~~~~~--~~~ 255 (344)
..+.+|+.. +-||++-++.+.-.|+.+.++|+|+|.+++.| |...+.+.+ ....+....+.+. .++
T Consensus 8 ~~~~lr~~l~~~~~l~~~g~~d~lsAklae~aGfdai~~~~~g~~~s~g~~~~~g~l~~~d~~~~~~~~a~~i~~~v~~i 87 (197)
T d2p10a1 8 LVDRFQKKIRAGEPIIGGGAGTGLSAKSEEAGDIDLIVIYNSGRYRMAGRGSLAGLLAYGNANQIVVDMAREVLPVVRHT 87 (197)
T ss_dssp HHHHHHHHHHTTCCEEEEEESSHHHHHHHHHTTCSEEEECHHHHHHHTTCCGGGGGBTEEEHHHHHHHHHHHHGGGCSSS
T ss_pred HHHHHHHHHhCCCCEEEcccccHHHHHHHHHcCCCEEEEecHHHHHHcCCcccccccChhHHHHHHHHHHHHHHHhcccC
Confidence 355555544 68999999999999999999999999998743 111111211 1122222222221 269
Q ss_pred cEEEecC----CCCHHHHHH-HHHcCCCEEEE
Q 019244 256 PVFLDGG----VRRGTDVFK-ALALGASGIFI 282 (344)
Q Consensus 256 ~via~GG----Ir~g~dv~k-alalGAd~V~i 282 (344)
|||++.. ..+-...++ ..++|+.+|++
T Consensus 88 PviaD~dG~g~~~nv~rtv~~~~~aG~agI~~ 119 (197)
T d2p10a1 88 PVLAGVNGTDPFMVMSTFLRELKEIGFAGVQN 119 (197)
T ss_dssp CEEEEECTTCTTCCHHHHHHHHHHHTCCEEEE
T ss_pred ceEEecCCCCcchhHHHHHHHHHHcCCeEEec
Confidence 9999753 333334344 44589999986
|
| >d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId: 5724]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Tritrichomonas foetus [TaxId: 5724]
Probab=92.53 E-value=0.26 Score=44.57 Aligned_cols=69 Identities=19% Similarity=0.157 Sum_probs=52.5
Q ss_pred HHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 019244 210 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 283 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig 283 (344)
.+.++.+.++|+|.|+++.+.|+ .....+.+..+++.....+||++ |.|-|++.+...+..|||+|-+|
T Consensus 112 ~~~~~~L~~ag~d~i~IDvAhG~----~~~v~~~i~~ir~~~~~~~~IiA-GNVaT~e~~~~L~~aGaD~vkVG 180 (362)
T d1pvna1 112 RERVPALVEAGADVLCIDSSDGF----SEWQKITIGWIREKYGDKVKVGA-GNIVDGEGFRYLADAGADFIKIG 180 (362)
T ss_dssp HHHHHHHHHHTCSEEEECCSCCC----BHHHHHHHHHHHHHHGGGSCEEE-EEECSHHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHhhcCceEEeechhccc----hhHHHHHHHHHHHhhccceeeec-ccccCHHHHHHHHHhCCcEEEec
Confidence 45688899999999999875543 12234556666555544677765 89999999999999999999888
|
| >d1f74a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: N-acetylneuraminate lyase species: Haemophilus influenzae [TaxId: 727]
Probab=92.05 E-value=0.33 Score=42.13 Aligned_cols=88 Identities=10% Similarity=0.158 Sum_probs=54.3
Q ss_pred HHHHc-CCcEEEEccCCCCCCCCch-hhHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHcCCCEEEEchHHHH
Q 019244 215 IAVQA-GAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVVY 288 (344)
Q Consensus 215 ~~~~~-G~d~I~v~~~gG~~~~~g~-~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~k----alalGAd~V~ig~~~l~ 288 (344)
.+++. |+++|.+.|+-|-...-.. .-.+.+..+++..++++||++.-|=.+..|+++ +-.+|||++++..|+++
T Consensus 32 ~li~~~Gv~gi~v~GttGE~~~Ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~s~~~~iela~~a~~~Gad~i~~~pP~~~ 111 (293)
T d1f74a_ 32 HNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGYDCLSAVTPFYY 111 (293)
T ss_dssp HHHHTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSCHHHHHHHHHHHHHHTCSEEECCCCCSS
T ss_pred HHHHhCCCCEEEECccCcchhhCCHHHHhhhhheeeccccCccccccccccccHHHHHHHHHHHHHcCCCEeeccCcccc
Confidence 35554 9999999765442111111 123445555666677899998666667777664 33479999999999876
Q ss_pred HhhhcChHHHHHHHHHH
Q 019244 289 SLAAEGEKGVRRVLEML 305 (344)
Q Consensus 289 ~~~~~G~~~v~~~l~~l 305 (344)
.. ..+++.++++.+
T Consensus 112 ~~---s~~~~~~~~~~v 125 (293)
T d1f74a_ 112 KF---SFPEIKHYYDTI 125 (293)
T ss_dssp CC---CHHHHHHHHHHH
T ss_pred cc---chHHHHHHHhcc
Confidence 32 344444444443
|
| >d1ojxa_ c.1.10.1 (A:) Archaeal fructose 1,6-bisphosphate aldolase {Archaeon Thermoproteus tenax [TaxId: 2271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Archaeal fructose 1,6-bisphosphate aldolase species: Archaeon Thermoproteus tenax [TaxId: 2271]
Probab=91.90 E-value=1.2 Score=37.85 Aligned_cols=83 Identities=33% Similarity=0.494 Sum_probs=54.9
Q ss_pred HhcCCcEEEEee---------cCHHH----HHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecC
Q 019244 196 TITKLPILVKGV---------LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 262 (344)
Q Consensus 196 ~~~~~PvivK~v---------~~~~~----a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GG 262 (344)
..+++|+++=.. .+++. ++.+.+.|+|.|++--. ...+...++.... ..+||+..||
T Consensus 133 ~~~glP~v~e~~p~g~~~~~~~~~~~v~~aaria~ElGaDivK~~~p---------~~~~~~~~~v~~a-~~~pv~~~gG 202 (251)
T d1ojxa_ 133 VKFDLPLVVWSYPRGGKVVNETAPEIVAYAARIALELGADAMKIKYT---------GDPKTFSWAVKVA-GKVPVLMSGG 202 (251)
T ss_dssp HHHTCCEEEEECCCSTTCCCTTCHHHHHHHHHHHHHHTCSEEEECCC---------SSHHHHHHHHHHT-TTSCEEEECC
T ss_pred HHcCCeEEEEEeecCCccccCCCHHHHHHHHHHHHHhCCCEEEecCC---------CcHHHHHHHHHhc-CCCceEEeCC
Confidence 345899876432 23332 67789999999999422 2234444444332 3688888888
Q ss_pred CC--CHHHHHH----HHHcCCCEEEEchHHHH
Q 019244 263 VR--RGTDVFK----ALALGASGIFIGRPVVY 288 (344)
Q Consensus 263 Ir--~g~dv~k----alalGAd~V~ig~~~l~ 288 (344)
-. +..++++ ++..||..+.+||.++.
T Consensus 203 ~~~~~~~~~l~~~~~a~~~Ga~G~~~GRni~q 234 (251)
T d1ojxa_ 203 PKTKTEEDFLKQVEGVLEAGALGIAVGRNVWQ 234 (251)
T ss_dssp SCCSSHHHHHHHHHHHHHTTCCEEEESHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHCCCcEEeechhhhC
Confidence 65 4556654 56679999999999863
|
| >d1onra_ c.1.10.1 (A:) Transaldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Transaldolase species: Escherichia coli [TaxId: 562]
Probab=91.69 E-value=0.47 Score=42.03 Aligned_cols=100 Identities=16% Similarity=0.217 Sum_probs=68.6
Q ss_pred cHHHHHHHHHhc--CCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCC-------------CchhhHHHHHHHHHH-
Q 019244 187 SWKDVKWLQTIT--KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLD-------------YVPATIMALEEVVKA- 250 (344)
Q Consensus 187 ~~~~i~~i~~~~--~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~-------------~g~~~~~~l~~i~~~- 250 (344)
+|+-|+.++... ++++-+=.+.|.+.|..+.++|+.+|-.. -||-.| .+.+-+..+.++.+.
T Consensus 135 T~eGi~A~~~L~~~GI~vN~TlvFS~~Qa~~aa~Aga~~iSpf--VgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~ 212 (316)
T d1onra_ 135 TWQGIRAAEQLEKEGINCNLTLLFSFAQARACAEAGVFLISPF--VGRILDWYKANTDKKEYAPAEDPGVVSVSEIYQYY 212 (316)
T ss_dssp SHHHHHHHHHHHHTTCCEEEEEECSHHHHHHHHHTTCSEEEEB--SHHHHHHHHHSSSCCCCCGGGCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCcccceeeecHHHHHHHHHcCCeEEeee--ecchhhhhhcccccccccccCCchHHHHHHHHHHH
Confidence 677665555433 89999988999999999999999988653 344211 122334444444443
Q ss_pred --ccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhh
Q 019244 251 --TQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 291 (344)
Q Consensus 251 --~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~ 291 (344)
.+.+..|++ ..+|+..++... +|+|.+-+.-.++..+.
T Consensus 213 k~~g~~t~v~~-AS~r~~~~v~~l--aG~D~~Ti~p~~l~~l~ 252 (316)
T d1onra_ 213 KEHGYETVVMG-ASFRNIGEILEL--AGCDRLTIAPALLKELA 252 (316)
T ss_dssp HHTTCCCEEEE-BCCSSHHHHHHT--TTSSEEEECHHHHHHHH
T ss_pred HHcCCCceeeh-hhccchhhHHHH--hcCCceecCHHHHHHHh
Confidence 333555555 569999998763 69999999888877654
|
| >d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Staphylococcus aureus [TaxId: 1280]
Probab=91.16 E-value=0.14 Score=42.22 Aligned_cols=41 Identities=15% Similarity=0.238 Sum_probs=36.0
Q ss_pred cHHHHHHHHHhcCCcEEEEe-ecCHHHHHHHHHcCCcEEEEc
Q 019244 187 SWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVS 227 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~-v~~~~~a~~~~~~G~d~I~v~ 227 (344)
.|+.+.++++..++||++-+ +.|++++.++.++|||++.+.
T Consensus 163 ~~~~i~~~~~~~~iPVia~GGI~t~~d~~~~~~~GAdgV~iG 204 (222)
T d1y0ea_ 163 DFQFLKDVLQSVDAKVIAEGNVITPDMYKRVMDLGVHCSVVG 204 (222)
T ss_dssp HHHHHHHHHHHCCSEEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHhcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEc
Confidence 46778999999999998865 569999999999999999994
|
| >d1ujpa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Thermus thermophilus [TaxId: 274]
Probab=90.88 E-value=0.29 Score=42.54 Aligned_cols=39 Identities=31% Similarity=0.288 Sum_probs=32.8
Q ss_pred HHHHHHHHHhcCCcEEEEe-ecCHHHHHHHHHcCCcEEEEcc
Q 019244 188 WKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSN 228 (344)
Q Consensus 188 ~~~i~~i~~~~~~PvivK~-v~~~~~a~~~~~~G~d~I~v~~ 228 (344)
-+.++++|+.+++|+.+.- +.++++++.+ .++|+++|..
T Consensus 191 ~~~i~~ik~~t~~Pv~vGFGIs~~e~v~~~--~~ADGvIVGS 230 (271)
T d1ujpa_ 191 KDLVRRIKARTALPVAVGFGVSGKATAAQA--AVADGVVVGS 230 (271)
T ss_dssp HHHHHHHHTTCCSCEEEESCCCSHHHHHHH--TTSSEEEECH
T ss_pred HHHHHhhhccccCCeEEeCCCCCHHHHHHh--CCCCEEEEcH
Confidence 4579999999999999985 5789999875 5999999953
|
| >d1vc4a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Thermus thermophilus [TaxId: 274]
Probab=90.71 E-value=0.73 Score=39.40 Aligned_cols=71 Identities=21% Similarity=0.207 Sum_probs=56.1
Q ss_pred HHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHH
Q 019244 210 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 286 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~ 286 (344)
.+.|+...+.||++|-|-.-.- +-...++.|..+++.+ ++||+.--=|.+..++.++.++|||+|.+--.+
T Consensus 68 ~~~A~~y~~~GA~aiSVLTe~~----~F~Gs~~dl~~v~~~~--~iPvLrKDFIid~~QI~ea~~~GADaVLLIaal 138 (254)
T d1vc4a_ 68 VEAALAYARGGARAVSVLTEPH----RFGGSLLDLKRVREAV--DLPLLRKDFVVDPFMLEEARAFGASAALLIVAL 138 (254)
T ss_dssp HHHHHHHHHTTCSEEEEECCCS----SSCCCHHHHHHHHHHC--CSCEEEESCCCSHHHHHHHHHTTCSEEEEEHHH
T ss_pred HHHHHHHHhcCCceEEEEcCcc----cccccHHHHHHHHHHc--CCCcccCCccccHHHHHHHHhccchHHHHHHHH
Confidence 4668888999999998864210 1112456677777777 799999999999999999999999999987654
|
| >d1wv2a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: ThiG-like family: ThiG-like domain: Thiazole biosynthesis protein ThiG species: Pseudomonas aeruginosa [TaxId: 287]
Probab=90.69 E-value=0.83 Score=38.72 Aligned_cols=129 Identities=20% Similarity=0.210 Sum_probs=75.6
Q ss_pred ceeecccccccccCChhhHHHHHHHHHcCC--cc-----------ccCCHHHHHHHHHHHHHcCCcEEEeccCCcccccc
Q 019244 73 PIMIAPTAMQKMAHPEGEYATARAASAAGT--IM-----------VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRR 139 (344)
Q Consensus 73 Pi~iapm~~~~~~~~~~~~~lA~aA~~~g~--~~-----------~~~d~~~~~~~i~~a~~ag~~~l~~tvd~~~~g~r 139 (344)
+.++-.++|+.. .+--..+|+-|.+.+- -. .+.|+-.+-+-.+...+.||.++..+-|.|....+
T Consensus 66 ~~~LPNTAGc~t--aeeAv~~A~larE~~~~~~~iKLEVi~d~~~L~Pd~~etl~Aa~~Lv~egF~Vlpy~~~D~v~ak~ 143 (243)
T d1wv2a_ 66 YTILPNTAGCYD--AVEAVRTCRLARELLDGHNLVKLEVLADQKTLFPNVVETLKAAEQLVKDGFDVMVYTSDDPIIARQ 143 (243)
T ss_dssp SEEEEECTTCCS--HHHHHHHHHHHHTTTTSCCEEEECCBSCTTTCCBCHHHHHHHHHHHHTTTCEEEEEECSCHHHHHH
T ss_pred eeeccccccccc--HHHHHHHHHHHHHHhCCCceEEEeeeccccccCCcHHHHHHHHHHhhcCceEEEeccCCCHHHHhH
Confidence 445555655432 2223467777777642 22 23455444444445556799998888777776555
Q ss_pred HHHHHhhcCCCCcccccccccccccccccccchhhHHHHhhcCCCCCcHHHHHHHHHhcCCcEEEEe-ecCHHHHHHHHH
Q 019244 140 EADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKG-VLTAEDARIAVQ 218 (344)
Q Consensus 140 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~PvivK~-v~~~~~a~~~~~ 218 (344)
..++--...+|.+-. + . .+.+-.+...++.+++..++||++-. +-++.||..+.+
T Consensus 144 le~~Gc~~vMplgsP-----------I------------G-sg~Gi~n~~~l~~i~~~~~vpvivdAGIg~psdaa~AME 199 (243)
T d1wv2a_ 144 LAEIGCIAVMPLAGL-----------I------------G-SGLGICNPYNLRIILEEAKVPVLVDAGVGTASDAAIAME 199 (243)
T ss_dssp HHHSCCSEEEECSSS-----------T------------T-CCCCCSCHHHHHHHHHHCSSCBEEESCCCSHHHHHHHHH
T ss_pred HHHcCceeeeecccc-----------c------------c-cccccccHHHHHhccccCCcceEeecccCCHHHHHHHHH
Confidence 433210000111000 0 0 01112245568888888899999865 579999999999
Q ss_pred cCCcEEEEc
Q 019244 219 AGAAGIIVS 227 (344)
Q Consensus 219 ~G~d~I~v~ 227 (344)
.|+|+|-+.
T Consensus 200 lG~dgVLvn 208 (243)
T d1wv2a_ 200 LGCEAVLMN 208 (243)
T ss_dssp HTCSEEEES
T ss_pred ccCCEEEec
Confidence 999999874
|
| >d1djqa1 c.1.4.1 (A:1-340) Trimethylamine dehydrogenase, N-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Trimethylamine dehydrogenase, N-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=90.66 E-value=5 Score=35.11 Aligned_cols=89 Identities=18% Similarity=0.082 Sum_probs=56.5
Q ss_pred CCcHHHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCC-------------CCCCch-------hhHHHH
Q 019244 185 SLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR-------------QLDYVP-------ATIMAL 244 (344)
Q Consensus 185 ~~~~~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~-------------~~~~g~-------~~~~~l 244 (344)
..+.++|+++.+.+ .+-|+.+.++|.|+|.+.+..|+ ...+|. -.++.+
T Consensus 138 ~mt~~eI~~ii~~f-----------~~aA~~a~~aGfDgVEih~ahGyLl~qFls~~~N~R~D~yGGs~enR~Rf~~EIi 206 (340)
T d1djqa1 138 EMDLSDIAQVQQFY-----------VDAAKRSRDAGFDIVYVYGAHSYLPLQFLNPYYNKRTDKYGGSLENRARFWLETL 206 (340)
T ss_dssp ECCHHHHHHHHHHH-----------HHHHHHHHHHTCSEEEEEECTTCHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH-----------HHHHHHHHHhccceeeeeccccchhhhhhhhccccccccccccHHhhhHHHHHHH
Confidence 44677888888765 46789999999999999764332 122342 245667
Q ss_pred HHHHHHccCCCcEEE----e-----cCCCCHHHHHHH---HHcCCCEEEEch
Q 019244 245 EEVVKATQGRIPVFL----D-----GGVRRGTDVFKA---LALGASGIFIGR 284 (344)
Q Consensus 245 ~~i~~~~~~~~~via----~-----GGIr~g~dv~ka---lalGAd~V~ig~ 284 (344)
..|++.++.+.+|.. + |+.....+..++ ...|.|.+-+..
T Consensus 207 ~aIr~~vg~~~~i~~R~s~~~~~~~~~~~~e~~~~~~~~l~~~~vd~~~vs~ 258 (340)
T d1djqa1 207 EKVKHAVGSDCAIATRFGVDTVYGPGQIEAEVDGQKFVEMADSLVDMWDITI 258 (340)
T ss_dssp HHHHHHHTTTSEEEEEEEEECSSCTTSCCTTTHHHHHHHHHTTTCSEEEEEE
T ss_pred HHHHHHHhhhhhceeeccccccccCCCCchhhhHHHHHHHHhhccceeeeee
Confidence 777777766666653 1 344444444333 336899887643
|
| >d1dbta_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Bacillus subtilis [TaxId: 1423]
Probab=90.58 E-value=0.22 Score=42.20 Aligned_cols=79 Identities=23% Similarity=0.348 Sum_probs=51.0
Q ss_pred HHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHH----------HHHHHHcCCCEEE
Q 019244 212 DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD----------VFKALALGASGIF 281 (344)
Q Consensus 212 ~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~d----------v~kalalGAd~V~ 281 (344)
.+..+.+.|+++++.+.+ .+..+++.. ++-.++.+.||+-..+ ..+|+..|||.+.
T Consensus 147 ~~~~~~~~g~~g~v~s~~-------------~~~~~r~~~-~~~~~ivtPGI~~~~~~~~dq~r~~tp~~a~~~GaD~iI 212 (237)
T d1dbta_ 147 YSKQAEESGLDGVVCSVH-------------EAKAIYQAV-SPSFLTVTPGIRMSEDAANDQVRVATPAIAREKGSSAIV 212 (237)
T ss_dssp HHHHHHHTTCSEEECCGG-------------GHHHHTTTS-CTTCEEEECCBCCTTSCCTTCSSCBCHHHHHHTTCSEEE
T ss_pred HHHhhhhcCcceeecchh-------------hhhhhcccc-ccceeEeccccccCCCCCCCceeeCCHHHHHHcCCCEEE
Confidence 345677889999877532 122333332 2445788899876432 5678889999999
Q ss_pred EchHHHHHhhhcChHHHHHHHHHHHHHHH
Q 019244 282 IGRPVVYSLAAEGEKGVRRVLEMLREEFE 310 (344)
Q Consensus 282 ig~~~l~~~~~~G~~~v~~~l~~l~~el~ 310 (344)
+||+++.+ +...+..+.+++|++
T Consensus 213 VGR~I~~s------~dP~~aa~~i~~~ie 235 (237)
T d1dbta_ 213 VGRSITKA------EDPVKAYKAVRLEWE 235 (237)
T ss_dssp ECHHHHTS------SCHHHHHHHHHHHHH
T ss_pred ECCcccCC------CCHHHHHHHHHHHHc
Confidence 99999853 122345566666654
|
| >d1s2wa_ c.1.12.7 (A:) Phosphoenolpyruvate mutase {Blue mussel (Mytilus edulis) [TaxId: 6550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: Phosphoenolpyruvate mutase species: Blue mussel (Mytilus edulis) [TaxId: 6550]
Probab=90.50 E-value=0.51 Score=40.89 Aligned_cols=84 Identities=25% Similarity=0.254 Sum_probs=57.1
Q ss_pred CCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCC----CCCCchhh----HHHHHHHHHHccCCCcEEEec--CCCCHHH
Q 019244 199 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----QLDYVPAT----IMALEEVVKATQGRIPVFLDG--GVRRGTD 268 (344)
Q Consensus 199 ~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~----~~~~g~~~----~~~l~~i~~~~~~~~~via~G--GIr~g~d 268 (344)
+-|+++-++-+.-.|+.+.++|.+++.+++++=. ..|.+.-+ ++.+..|...+ ++||++|. |..++.+
T Consensus 15 ~~~~~~p~~~Da~SAr~~e~aGf~a~~~ss~~~aas~G~pD~~~lt~~e~~~~~~~I~~~~--~lPv~~D~d~GyG~~~~ 92 (275)
T d1s2wa_ 15 KDLEFIMEAHNGLSARIVQEAGFKGIWGSGLSVSAQLGVRDSNEASWTQVVEVLEFMSDAS--DVPILLDADTGYGNFNN 92 (275)
T ss_dssp SSCEEEEEECSHHHHHHHHHHTCSCEEECCHHHHHTC---------CHHHHHHHHHHHHTC--SSCEEEECCSSCSSHHH
T ss_pred CCCEEeecCcCHHHHHHHHHcCCCEEEhhHHHHHHHcCCCCCCccchhhHHHHHHhhhccc--CCceeEecccccccchH
Confidence 5688888899999999999999999999875310 12323222 23445555544 79999965 7777776
Q ss_pred HH----HHHHcCCCEEEEch
Q 019244 269 VF----KALALGASGIFIGR 284 (344)
Q Consensus 269 v~----kalalGAd~V~ig~ 284 (344)
+. ++...||.++.|=-
T Consensus 93 v~~tv~~~~~aGaagi~iED 112 (275)
T d1s2wa_ 93 ARRLVRKLEDRGVAGACLED 112 (275)
T ss_dssp HHHHHHHHHHTTCCEEEEEC
T ss_pred HHHHHHHHHHhccceeEeec
Confidence 65 44557999998754
|
| >d1twda_ c.1.30.1 (A:) Copper homeostasis protein CutC {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: CutC-like family: CutC-like domain: Copper homeostasis protein CutC species: Shigella flexneri [TaxId: 623]
Probab=90.29 E-value=3.1 Score=35.14 Aligned_cols=93 Identities=11% Similarity=0.166 Sum_probs=56.3
Q ss_pred CCcHHHHHHHHHhc-CCcEEEEee----cCH-HHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEE
Q 019244 185 SLSWKDVKWLQTIT-KLPILVKGV----LTA-EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 258 (344)
Q Consensus 185 ~~~~~~i~~i~~~~-~~PvivK~v----~~~-~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~vi 258 (344)
..+.+.++++.+.. ++|+.+--. .++ +..+.+.+.|++.|-.||...+. ..-++.|.++.+... ..-|+
T Consensus 99 ~iD~~~~~~L~~~a~~l~vTFHRAfD~~~d~~~al~~Li~lG~~rILTSGg~~~a----~~G~~~L~~L~~~a~-~~iIm 173 (247)
T d1twda_ 99 NVDMPRMEKIMAAAGPLAVTFHRAFDMCANPLYTLNNLAELGIARVLTSGQKSDA----LQGLSKIMELIAHRD-APIIM 173 (247)
T ss_dssp SBCHHHHHHHHHHHTTSEEEECGGGGGCSCHHHHHHHHHHHTCCEEEECTTSSST----TTTHHHHHHHHTSSS-CCEEE
T ss_pred CccHHHHHHHHHHhcccCeeeehhhhhhCCHHHHHHHHHhcCCCeEeccCCCCch----hHHHHHHHHHHHhcC-CcEEE
Confidence 34555666666655 466554332 233 44678999999999887643221 223445555554433 33488
Q ss_pred EecCCCCHHHHHHHHHcCCCEEEEc
Q 019244 259 LDGGVRRGTDVFKALALGASGIFIG 283 (344)
Q Consensus 259 a~GGIr~g~dv~kalalGAd~V~ig 283 (344)
+.|||+. ..+.+.+..|++.+=.+
T Consensus 174 ~GgGI~~-~Ni~~l~~~g~~e~H~s 197 (247)
T d1twda_ 174 AGAGVRA-ENLHHFLDAGVLEVHSS 197 (247)
T ss_dssp EESSCCT-TTHHHHHHHTCSEEEEC
T ss_pred ecCCCCH-HHHHHHHHcCCCEEEEC
Confidence 8899874 56777777898876543
|
| >d1r0ma1 c.1.11.2 (A:133-375) N-acylamino acid racemase {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Deinococcus radiodurans [TaxId: 1299]
Probab=90.27 E-value=3.3 Score=34.23 Aligned_cols=86 Identities=20% Similarity=0.166 Sum_probs=58.4
Q ss_pred CcHHHHHHHHHhcCCcEEEEee-cCHHHHHHHHHcC-CcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCC
Q 019244 186 LSWKDVKWLQTITKLPILVKGV-LTAEDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 263 (344)
Q Consensus 186 ~~~~~i~~i~~~~~~PvivK~v-~~~~~a~~~~~~G-~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGI 263 (344)
.+|+..+++++.+++|+...+. .+..+.+.+++.+ +|.+.+.-. .-+|.....-+..+++.. .++++..+..
T Consensus 94 ~d~~~~~~l~~~~~ipia~gE~~~~~~~~~~~i~~~~~d~v~~d~~----~~GGit~~~~i~~~A~~~--gi~v~~h~~~ 167 (243)
T d1r0ma1 94 DDLVDHAELARRIRTPLCLDESVASASDARKALALGAGGVINLKVA----RVGGHAESRRVHDVAQSF--GAPVWCGGML 167 (243)
T ss_dssp TCSHHHHHHHHHCSSCEEESTTCCSHHHHHHHHHHTSCSEEEECTT----TTTSHHHHHHHHHHHHHT--TCCEEECCCC
T ss_pred cchHHHHHHhhcCCcccccccchhhhhhhhhhhhcccccceecccc----eeccHHHHHHHHHHHHHC--CCceeccccc
Confidence 3678899999999999998775 5788888877766 788877531 112344444444454444 7899988777
Q ss_pred CCHHHHHHHHHcCC
Q 019244 264 RRGTDVFKALALGA 277 (344)
Q Consensus 264 r~g~dv~kalalGA 277 (344)
.++.-..-.+.+.|
T Consensus 168 ~~~i~~~a~~h~~a 181 (243)
T d1r0ma1 168 ESGIGRAHNIHLST 181 (243)
T ss_dssp CCHHHHHHHHHHTT
T ss_pred ccchhhhHHHHHHh
Confidence 77766665555543
|
| >d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Maize (Zea mays) [TaxId: 4577]
Probab=90.26 E-value=0.18 Score=43.59 Aligned_cols=40 Identities=23% Similarity=0.353 Sum_probs=35.9
Q ss_pred HHHHHHHHhcCCcEEEEe-ecCHHHHHHHHHcCCcEEEEcc
Q 019244 189 KDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSN 228 (344)
Q Consensus 189 ~~i~~i~~~~~~PvivK~-v~~~~~a~~~~~~G~d~I~v~~ 228 (344)
+.++++|+.+++|+.+.. +.++++++.+.+.|+|+++|..
T Consensus 190 ~~i~~ik~~t~~Pi~vGFGI~~~e~v~~~~~~gaDGvIVGS 230 (261)
T d1rd5a_ 190 SLIQEVKKVTNKPVAVGFGISKPEHVKQIAQWGADGVIIGS 230 (261)
T ss_dssp HHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEECH
T ss_pred HHHHHhhhccCCCeEEEcCCCCHHHHHHHHhcCCCEEEECH
Confidence 469999999999999986 4799999999999999999954
|
| >d1wufa1 c.1.11.2 (A:1127-1370) N-acylamino acid racemase {Listeria innocua [TaxId: 1642]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Listeria innocua [TaxId: 1642]
Probab=90.13 E-value=2.1 Score=35.59 Aligned_cols=83 Identities=22% Similarity=0.282 Sum_probs=56.3
Q ss_pred CcHHHHHHHHHhcCCcEEEEee-cCHHHHHHHHHcC-CcEEEEcc--CCCCCCCCchhhHHHHHHHHHHccCCCcEEEec
Q 019244 186 LSWKDVKWLQTITKLPILVKGV-LTAEDARIAVQAG-AAGIIVSN--HGARQLDYVPATIMALEEVVKATQGRIPVFLDG 261 (344)
Q Consensus 186 ~~~~~i~~i~~~~~~PvivK~v-~~~~~a~~~~~~G-~d~I~v~~--~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~G 261 (344)
.+++..+++++.+++|+..-+. .++.+...+++.| +|.+.+.- .|| .....-+..+++.. .+++...+
T Consensus 94 ~d~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~~a~d~v~~d~~~~GG------it~~~ki~~~a~~~--gi~v~~h~ 165 (244)
T d1wufa1 94 KDFVDHAWLQKQLKTRICLDENIRSVKDVEQAHSIGSCRAINLKLARVGG------MSSALKIAEYCALN--EILVWCGG 165 (244)
T ss_dssp SCSHHHHHHHTTCSSEEEECTTCCSHHHHHHHHHHTCCSEEEECTGGGTS------HHHHHHHHHHHHHT--TCEEEECC
T ss_pred cchhhhhccccccccccccCccccchhhhhhhccccccceeecccccccc------hhhHHHHHHHHHHc--CCEEecCC
Confidence 3678899999999999988776 6788999998888 58887753 233 33333333444433 68888766
Q ss_pred CCCCHHHHHHHHHcC
Q 019244 262 GVRRGTDVFKALALG 276 (344)
Q Consensus 262 GIr~g~dv~kalalG 276 (344)
-..++.-.+-++.+.
T Consensus 166 ~~~~~i~~~~~~~~~ 180 (244)
T d1wufa1 166 MLEAGVGRAHNIALA 180 (244)
T ss_dssp CCCCHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHH
Confidence 566666655555443
|
| >d1twda_ c.1.30.1 (A:) Copper homeostasis protein CutC {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: CutC-like family: CutC-like domain: Copper homeostasis protein CutC species: Shigella flexneri [TaxId: 623]
Probab=89.93 E-value=0.77 Score=39.10 Aligned_cols=71 Identities=27% Similarity=0.307 Sum_probs=53.2
Q ss_pred ecCHHHHHHHHHcCCcEEEEccC---CCCCCCCchhhHHHHHHHHHHccCCCcEEEe-----cCCC-CH-------HHHH
Q 019244 207 VLTAEDARIAVQAGAAGIIVSNH---GARQLDYVPATIMALEEVVKATQGRIPVFLD-----GGVR-RG-------TDVF 270 (344)
Q Consensus 207 v~~~~~a~~~~~~G~d~I~v~~~---gG~~~~~g~~~~~~l~~i~~~~~~~~~via~-----GGIr-~g-------~dv~ 270 (344)
+.+.+++..+.+.|||-|-+... ||. -|+...+..+++.+ ++||.+. |.+. |. .|+.
T Consensus 7 v~s~~~a~~A~~~GAdRIELc~~l~~GGl-----TPS~g~i~~~~~~~--~iPv~vMIRPR~GdF~Ys~~E~~~M~~di~ 79 (247)
T d1twda_ 7 CYSMECALTAQQNGADRVELCAAPKEGGL-----TPSLGVLKSVRQRV--TIPVHPIIRPRGGDFCYSDGEFAAILEDVR 79 (247)
T ss_dssp ESSHHHHHHHHHTTCSEEEECBCGGGTCB-----CCCHHHHHHHHHHC--CSCEEEBCCSSSSCSCCCHHHHHHHHHHHH
T ss_pred eCCHHHHHHHHHcCCCEEEEcCCcccCCC-----CCCHHHHHHHHHhc--CCCeEEEEecCCCCCCCCHHHHHHHHHHHH
Confidence 37899999999999999999642 443 35667777777766 7888874 4433 22 4666
Q ss_pred HHHHcCCCEEEEch
Q 019244 271 KALALGASGIFIGR 284 (344)
Q Consensus 271 kalalGAd~V~ig~ 284 (344)
.+..+||+.|.+|-
T Consensus 80 ~~k~~G~dGvV~G~ 93 (247)
T d1twda_ 80 TVRELGFPGLVTGV 93 (247)
T ss_dssp HHHHTTCSEEEECC
T ss_pred HHHHcCCCeEEEEE
Confidence 77789999999994
|
| >d1muma_ c.1.12.7 (A:) 2-methylisocitrate lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: 2-methylisocitrate lyase species: Escherichia coli [TaxId: 562]
Probab=89.92 E-value=0.66 Score=40.45 Aligned_cols=91 Identities=23% Similarity=0.365 Sum_probs=61.8
Q ss_pred HHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCC----C-CCCCchhh----HHHHHHHHHHccCCCcEEEec
Q 019244 191 VKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGA----R-QLDYVPAT----IMALEEVVKATQGRIPVFLDG 261 (344)
Q Consensus 191 i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG----~-~~~~g~~~----~~~l~~i~~~~~~~~~via~G 261 (344)
++++-+. +-|+.+-++-++-.|+.+.++|.+++.+|+.+= . ..|.+.-+ .+.+..|.+.+ ++||++|+
T Consensus 8 lr~ll~~-~~~~~~~~~~D~~sA~~~e~~Gf~a~~~sg~~~sa~~~G~pD~~~~~~~e~~~~~~~i~~a~--~~Pvi~D~ 84 (289)
T d1muma_ 8 FRAALTK-ENPLQIVGTINANHALLAQRAGYQAIYLSGGGVAAGSLGLPDLGISTLDDVLTDIRRITDVC--SLPLLVDA 84 (289)
T ss_dssp HHHHHHH-CSSEEEEECSSHHHHHHHHHTTCSCEEECHHHHHHTTSCCCSSSCCCHHHHHHHHHHHHHHC--CSCEEEEC
T ss_pred HHHHHhC-CCCEEeecCCCHHHHHHHHHcCCCEEEhhHHHHHHHccCCCCCCCCChHHHHHHHHHHhccc--CCCeeecc
Confidence 4444443 679999999999999999999999999986421 1 13444322 34456666665 89999986
Q ss_pred --CCCC-HHHH----HHHHHcCCCEEEEch
Q 019244 262 --GVRR-GTDV----FKALALGASGIFIGR 284 (344)
Q Consensus 262 --GIr~-g~dv----~kalalGAd~V~ig~ 284 (344)
|..+ +..+ -++...||.+|.|=-
T Consensus 85 d~GyG~~~~~v~~~v~~~~~aGvagi~iED 114 (289)
T d1muma_ 85 DIGFGSSAFNVARTVKSMIKAGAAGLHIED 114 (289)
T ss_dssp TTCSSSSHHHHHHHHHHHHHHTCSEEEEEC
T ss_pred cccccccchHHHHHHHHHHHCCCCEEEecC
Confidence 4443 4444 345568999998753
|
| >d1gvfa_ c.1.10.2 (A:) Tagatose-1,6-bisphosphate aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class II FBP aldolase domain: Tagatose-1,6-bisphosphate aldolase species: Escherichia coli [TaxId: 562]
Probab=89.60 E-value=1.5 Score=37.94 Aligned_cols=44 Identities=14% Similarity=0.407 Sum_probs=38.2
Q ss_pred CCCcHHHHHHHHHhcCCcEEEEee--cCHHHHHHHHHcCCcEEEEc
Q 019244 184 RSLSWKDVKWLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVS 227 (344)
Q Consensus 184 ~~~~~~~i~~i~~~~~~PvivK~v--~~~~~a~~~~~~G~d~I~v~ 227 (344)
+.++++.+++|++.+++|+++-+. .+.++.+++.+.|+.-|-++
T Consensus 186 p~l~~~~L~~i~~~~~vPLVlHGgSG~~~e~i~~ai~~Gi~KiNi~ 231 (284)
T d1gvfa_ 186 PKIDFQRLAEIREVVDVPLVLHGASDVPDEFVRRTIELGVTKVNVA 231 (284)
T ss_dssp CCCCHHHHHHHHHHCCSCEEECCCTTCCHHHHHHHHHTTEEEEEEC
T ss_pred CccccchhhhhhccccCCeEeeCCCCCCHHHHHHHHHcCeEEEEec
Confidence 456788999999999999999886 56788999999999999874
|
| >d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=89.48 E-value=0.58 Score=42.44 Aligned_cols=68 Identities=12% Similarity=0.171 Sum_probs=49.7
Q ss_pred HHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEch
Q 019244 211 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 284 (344)
Q Consensus 211 ~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~ 284 (344)
+.+..+.++|+|.++++..-|+ .....+.+..+++.. .+++|| .|.+.|.+.+.+.+..|||+|-+|-
T Consensus 122 ~~~~~l~~agv~vi~id~a~g~----~~~~~~~i~~ik~~~-~~~~iI-aGnVaT~e~a~~L~~aGAD~VkVGi 189 (378)
T d1jr1a1 122 YRLDLLALAGVDVVVLDSSQGN----SIFQINMIKYMKEKY-PNLQVI-GGNVVTAAQAKNLIDAGVDALRVGM 189 (378)
T ss_dssp HHHHHHHHHTCCEEEECCSSCC----SHHHHHHHHHHHHHS-TTCEEE-EEEECSHHHHHHHHHHTCSEEEECS
T ss_pred HHHHHHHhhccceEeeeccCcc----chhhHHHHHHHHHHC-CCCcee-ecccccHHHHHHHHHhCCCEEeecc
Confidence 3467788999999999864332 123344555665544 367776 5999999999999999999997773
|
| >d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Streptococcus pyogenes [TaxId: 1314]
Probab=89.39 E-value=1.6 Score=35.66 Aligned_cols=94 Identities=18% Similarity=0.060 Sum_probs=65.3
Q ss_pred cHHHHHHHHHhcCCcEEEEee-----------cCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCC
Q 019244 187 SWKDVKWLQTITKLPILVKGV-----------LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRI 255 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v-----------~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~ 255 (344)
..+.++++|+..+.|+....- ...+....+..+|+|.+.+...-+...+ .....+.+..+.... .
T Consensus 54 ~~~~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gad~i~~~~~~~~~~~-~~~~~~~~~~~~~~~---~ 129 (230)
T d1yxya1 54 SVRDIKEIQAITDLPIIGIIKKDYPPQEPFITATMTEVDQLAALNIAVIAMDCTKRDRHD-GLDIASFIRQVKEKY---P 129 (230)
T ss_dssp SHHHHHHHHTTCCSCEEEECBCCCTTSCCCBSCSHHHHHHHHTTTCSEEEEECCSSCCTT-CCCHHHHHHHHHHHC---T
T ss_pred ChhhHHHHHhhhhcchhhhhcccCCcceeeechhHHHHHHHHhcCCCEEEEecccccccc-hhhHHHHHHHHHhcC---C
Confidence 457889999999888765431 2457888999999999988753222111 223445555554433 2
Q ss_pred cEEEecCCCCHHHHHHHHHcCCCEEEEch
Q 019244 256 PVFLDGGVRRGTDVFKALALGASGIFIGR 284 (344)
Q Consensus 256 ~via~GGIr~g~dv~kalalGAd~V~ig~ 284 (344)
-++..+++.|..++.++..+|||.+.+..
T Consensus 130 ~~~v~~~v~t~~~a~~a~~~Gad~i~~~~ 158 (230)
T d1yxya1 130 NQLLMADISTFDEGLVAHQAGIDFVGTTL 158 (230)
T ss_dssp TCEEEEECSSHHHHHHHHHTTCSEEECTT
T ss_pred CceEecCCCCHHHHHHHHhcCCCEEEeec
Confidence 24555689999999999999999998765
|
| >d1to3a_ c.1.10.1 (A:) Putative aldolase YihT {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Putative aldolase YihT species: Salmonella typhimurium [TaxId: 90371]
Probab=88.75 E-value=1.9 Score=37.16 Aligned_cols=91 Identities=23% Similarity=0.210 Sum_probs=54.6
Q ss_pred HHhcCCcEEEEeec---------C-H----HHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCc-EEE
Q 019244 195 QTITKLPILVKGVL---------T-A----EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIP-VFL 259 (344)
Q Consensus 195 ~~~~~~PvivK~v~---------~-~----~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~-via 259 (344)
+..+++|+++=... + + .-++.+.+.|+|.+++--.|-. ....-.......++.... .+| |+.
T Consensus 149 c~~~glp~llE~l~~~~~~~~~~~~~~~i~~a~r~~~e~GaDi~K~~~p~~~-~~~~~~~~~~~~~~~~~~--~~p~vvL 225 (291)
T d1to3a_ 149 CHSNGLLSIIEPVVRPPRCGDKFDREQAIIDAAKELGDSGADLYKVEMPLYG-KGARSDLLTASQRLNGHI--NMPWVIL 225 (291)
T ss_dssp HHTTTCEEEEEEEECCCSSCSCCCHHHHHHHHHHHHTTSSCSEEEECCGGGG-CSCHHHHHHHHHHHHHTC--CSCEEEC
T ss_pred HHHcCCcceEEEEecCCCcccccchHHHHHHHHHHHHhcCCcEEEEecCCCc-hhhhHHHHHHHHHHhhcC--CCcEEEE
Confidence 34568998775431 1 2 2256778999999998432210 001112233344444433 678 667
Q ss_pred ecCCCCHHHHHH----HHHcCCCEEEEchHHHHH
Q 019244 260 DGGVRRGTDVFK----ALALGASGIFIGRPVVYS 289 (344)
Q Consensus 260 ~GGIr~g~dv~k----alalGAd~V~ig~~~l~~ 289 (344)
+||. +.+++.+ |+..||..+.+||.+.+.
T Consensus 226 s~G~-~~~~f~~~l~~A~~aGa~G~~~GR~iw~~ 258 (291)
T d1to3a_ 226 SSGV-DEKLFPRAVRVAMEAGASGFLAGRAVWSS 258 (291)
T ss_dssp CTTS-CTTTHHHHHHHHHHTTCCEEEESHHHHGG
T ss_pred eCCC-CHHHHHHHHHHHHHCCCeEEEeChhhhhC
Confidence 7886 4566665 444799999999988753
|
| >d2r25b1 c.23.1.1 (B:1087-1214) Response regulator Sin1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator Sin1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.60 E-value=3.2 Score=30.91 Aligned_cols=91 Identities=10% Similarity=0.162 Sum_probs=61.7
Q ss_pred HHHHHHHHhcCCcEEEEeecCHHHHHHHHH------cCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecC
Q 019244 189 KDVKWLQTITKLPILVKGVLTAEDARIAVQ------AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 262 (344)
Q Consensus 189 ~~i~~i~~~~~~PvivK~v~~~~~a~~~~~------~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GG 262 (344)
+.++.+-+.++... |....+.++|..+.+ ...|.|.++-.-. +..-++.+.++++....++|||+-.+
T Consensus 15 ~~l~~~L~~~g~~~-v~~a~~g~eAl~~l~~~~~~~~~~dlillD~~mP-----~~dG~el~~~ir~~~~~~~piI~lT~ 88 (128)
T d2r25b1 15 EVIKRMLNLEGIEN-IELACDGQEAFDKVKELTSKGENYNMIFMDVQMP-----KVDGLLSTKMIRRDLGYTSPIVALTA 88 (128)
T ss_dssp HHHHHHHHHTTCCC-EEEESSHHHHHHHHHHHHHHTCCCSEEEECSCCS-----SSCHHHHHHHHHHHSCCCSCEEEEES
T ss_pred HHHHHHHHHcCCeE-EEEEcChHHHHHHHHhhhhccCCCCEEEEEeCCC-----CCCHHHHHHHHHHccCCCCeEEEEEC
Confidence 34555556666542 345567777755443 3578888764311 12345677777765545799999889
Q ss_pred CCCHHHHHHHHHcCCCEEEEchHH
Q 019244 263 VRRGTDVFKALALGASGIFIGRPV 286 (344)
Q Consensus 263 Ir~g~dv~kalalGAd~V~ig~~~ 286 (344)
-.+..+..+++.+||+.. +..|+
T Consensus 89 ~~~~~~~~~~~~~G~~~~-l~KP~ 111 (128)
T d2r25b1 89 FADDSNIKECLESGMNGF-LSKPI 111 (128)
T ss_dssp CCSHHHHHHHHHTTCSEE-EESSC
T ss_pred CCCHHHHHHHHHcCCCEE-EECCC
Confidence 999999999999999977 56676
|
| >d1ccwa_ c.23.6.1 (A:) Glutamate mutase, small subunit {Clostridium cochlearium [TaxId: 1494]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Cobalamin (vitamin B12)-binding domain family: Cobalamin (vitamin B12)-binding domain domain: Glutamate mutase, small subunit species: Clostridium cochlearium [TaxId: 1494]
Probab=88.58 E-value=1.8 Score=33.10 Aligned_cols=89 Identities=17% Similarity=0.148 Sum_probs=55.1
Q ss_pred HHHHHHHHhcCCcEEEEee-cCHHH-HHHHHHcCCcEEEEccCCCCCCCCchhhH-HHHHHHHHHccCCCcEEEecCCCC
Q 019244 189 KDVKWLQTITKLPILVKGV-LTAED-ARIAVQAGAAGIIVSNHGARQLDYVPATI-MALEEVVKATQGRIPVFLDGGVRR 265 (344)
Q Consensus 189 ~~i~~i~~~~~~PvivK~v-~~~~~-a~~~~~~G~d~I~v~~~gG~~~~~g~~~~-~~l~~i~~~~~~~~~via~GGIr~ 265 (344)
..+..+-+..+.-|+-=+. .++++ +..+.+.++|.|.+|..-++. .+.+ +.+..+++....++||++-|++-+
T Consensus 21 ~mva~~l~~~G~~V~~LG~~~p~e~iv~a~~~~~~d~v~lS~~~~~~----~~~~~~~~~~l~~~~~~~i~iivGG~~~~ 96 (137)
T d1ccwa_ 21 KILDHAFTNAGFNVVNIGVLSPQELFIKAAIETKADAILVSSLYGQG----EIDCKGLRQKCDEAGLEGILLYVGGNIVV 96 (137)
T ss_dssp HHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHTCSEEEEEECSSTH----HHHHTTHHHHHHHTTCTTCEEEEEESCSS
T ss_pred HHHHHHHHHCCCeEEecccccCHHHHHHHHHhcCCCEEEEeeccccc----hHHHHHHHHHHHHhccCCCEEEEeCCcCC
Confidence 4566665555777665454 45554 677889999999999754321 1222 223333333224799998888764
Q ss_pred ----HHH-HHHHHHcCCCEEE
Q 019244 266 ----GTD-VFKALALGASGIF 281 (344)
Q Consensus 266 ----g~d-v~kalalGAd~V~ 281 (344)
..+ ..+.-++|.+.|.
T Consensus 97 ~~~~~~~~~~~l~~~Gv~~if 117 (137)
T d1ccwa_ 97 GKQHWPDVEKRFKDMGYDRVY 117 (137)
T ss_dssp SSCCHHHHHHHHHHTTCSEEC
T ss_pred CccccHHHHHHHHHcCCCEEE
Confidence 344 4455579999885
|
| >d1sjda1 c.1.11.2 (A:126-367) N-acylamino acid racemase {Amycolatopsis sp. [TaxId: 37632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Amycolatopsis sp. [TaxId: 37632]
Probab=88.47 E-value=5.2 Score=32.86 Aligned_cols=84 Identities=19% Similarity=0.129 Sum_probs=58.2
Q ss_pred CcHHHHHHHHHhcCCcEEEEee-cCHHHHHHHHHcC-CcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCC
Q 019244 186 LSWKDVKWLQTITKLPILVKGV-LTAEDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 263 (344)
Q Consensus 186 ~~~~~i~~i~~~~~~PvivK~v-~~~~~a~~~~~~G-~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGI 263 (344)
-+++.++++++.+++|+...+. .+..+...+.+.| +|.+.+.-. ..+|......+..+++.. .+++...+..
T Consensus 95 ~d~~~~~~l~~~~~~pia~gE~~~~~~~~~~~~~~~~~d~~~~d~~----~~GGit~~~~i~~~A~~~--~i~~~~h~~~ 168 (242)
T d1sjda1 95 EDVLGHAELARRIQTPICLDESIVSARAAADAIKLGAVQIVNIKPG----RVGGYLEARRVHDVCAAH--GIPVWCGGMI 168 (242)
T ss_dssp TCHHHHHHHHTTCSSCEEESTTCCSHHHHHHHHHTTCCSEEEECTT----TTTSHHHHHHHHHHHHHT--TCCEEECCCC
T ss_pred hhHHHHHHHHhccCcccccccccccchhhhhhhhcCccCEEEeccc----cCccchhhhHHHHHHHHC--CCEEeecccc
Confidence 3677899999999999988776 6889999999998 888877531 113355544455555544 6888887666
Q ss_pred CCHHHHHHHHHc
Q 019244 264 RRGTDVFKALAL 275 (344)
Q Consensus 264 r~g~dv~kalal 275 (344)
.++...+-++.+
T Consensus 169 ~~~i~~~a~~~~ 180 (242)
T d1sjda1 169 ETGLGRAANVAL 180 (242)
T ss_dssp CCHHHHHHHHHH
T ss_pred cchhHHHHHHHH
Confidence 666555544443
|
| >d1dxea_ c.1.12.5 (A:) 2-dehydro-3-deoxy-galactarate aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: HpcH/HpaI aldolase domain: 2-dehydro-3-deoxy-galactarate aldolase species: Escherichia coli [TaxId: 562]
Probab=87.83 E-value=2.3 Score=36.03 Aligned_cols=69 Identities=13% Similarity=0.093 Sum_probs=48.0
Q ss_pred cCHHHHHHHHHcCCcEEEEcc-CCCCCCCCchhhHHHHHHHHHHcc-CCCc-EEEecCCCCHHHHHHHHHcCCCEEEEch
Q 019244 208 LTAEDARIAVQAGAAGIIVSN-HGARQLDYVPATIMALEEVVKATQ-GRIP-VFLDGGVRRGTDVFKALALGASGIFIGR 284 (344)
Q Consensus 208 ~~~~~a~~~~~~G~d~I~v~~-~gG~~~~~g~~~~~~l~~i~~~~~-~~~~-via~GGIr~g~dv~kalalGAd~V~ig~ 284 (344)
.++..++.+..+|.|+|.++. ||. -+.+.+..+..+.. ..++ ++=.- -.+...+.++|-+||+.|++-.
T Consensus 25 ~~p~~~ei~a~~G~Dfv~iD~EHg~-------~~~~~~~~~i~a~~~~g~~~~VRvp-~~~~~~i~~~LD~Ga~GIivP~ 96 (253)
T d1dxea_ 25 SNPISTEVLGLAGFDWLVLDGEHAP-------NDISTFIPQLMALKGSASAPVVRVP-TNEPVIIKRLLDIGFYNFLIPF 96 (253)
T ss_dssp CSHHHHHHHTTSCCSEEEEESSSSS-------CCHHHHHHHHHHTTTCSSEEEEECS-SSCHHHHHHHHHTTCCEEEESC
T ss_pred CCHHHHHHHHcCCCCEEEEecccCC-------CChhHHHHHHHHHhccCCCceecCC-CCCHHHHHHHHhcCccEEEecc
Confidence 678999999999999999986 553 23333333333332 2344 43333 3688999999999999998864
|
| >d2cu0a1 c.1.5.1 (A:3-96,A:207-480) Inosine monophosphate dehydrogenase (IMPDH) {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Pyrococcus horikoshii [TaxId: 53953]
Probab=87.16 E-value=0.5 Score=42.77 Aligned_cols=66 Identities=20% Similarity=0.196 Sum_probs=48.8
Q ss_pred CHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 019244 209 TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 283 (344)
Q Consensus 209 ~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig 283 (344)
..+.+..+.++|+|.|+++..-|+ .....+.++++++.. ++|||+ |++.|.+-+. .+ .|||+|-+|
T Consensus 117 ~~~r~~~l~~aGvd~ivID~A~Gh----~~~~i~~lK~ir~~~--~~~vIa-GNVaT~e~~~-~l-~gaD~VkVG 182 (368)
T d2cu0a1 117 DIKRAIELDKAGVDVIVVDTAHAH----NLKAIKSMKEMRQKV--DADFIV-GNIANPKAVD-DL-TFADAVKVG 182 (368)
T ss_dssp CHHHHHHHHHTTCSEEEEECSCCC----CHHHHHHHHHHHHTC--CSEEEE-EEECCHHHHT-TC-TTSSEEEEC
T ss_pred HHHHHHHHHHcCCCEEEecCcccc----hhhhhhhhhhhhhhc--ccceee-ccccCHHHHH-hh-hcCcceeec
Confidence 346788899999999999875443 123456677777655 688887 9999987653 33 599999887
|
| >d7reqa2 c.23.6.1 (A:561-728) Methylmalonyl-CoA mutase alpha subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Cobalamin (vitamin B12)-binding domain family: Cobalamin (vitamin B12)-binding domain domain: Methylmalonyl-CoA mutase alpha subunit, C-terminal domain species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]
Probab=86.60 E-value=3.2 Score=32.88 Aligned_cols=87 Identities=25% Similarity=0.159 Sum_probs=54.0
Q ss_pred HHHHHHHhcCCcEEEEee-cCHHH-HHHHHHcCCcEEEEccCCCCCCCCchhhHHHH-HHHHHHccCCCcEEEecCCCCH
Q 019244 190 DVKWLQTITKLPILVKGV-LTAED-ARIAVQAGAAGIIVSNHGARQLDYVPATIMAL-EEVVKATQGRIPVFLDGGVRRG 266 (344)
Q Consensus 190 ~i~~i~~~~~~PvivK~v-~~~~~-a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l-~~i~~~~~~~~~via~GGIr~g 266 (344)
.+...-+..+.-|+.=+. .++++ +..+.+.++|.|.+|..-+. ..+.+..+ ..+++.-..+++|+ .||+--.
T Consensus 56 ~va~~l~~~G~eVi~lg~~~~~e~iv~aa~~~~advI~iSs~~~~----~~~~~~~l~~~L~~~g~~~v~Vi-vGG~ip~ 130 (168)
T d7reqa2 56 VIATAYADLGFDVDVGPLFQTPEETARQAVEADVHVVGVSSLAGG----HLTLVPALRKELDKLGRPDILIT-VGGVIPE 130 (168)
T ss_dssp HHHHHHHHTTCEEEECCTTBCHHHHHHHHHHHTCSEEEEEECSSC----HHHHHHHHHHHHHHTTCTTSEEE-EEESCCG
T ss_pred HHHHHHHhCCcceecCCCcCcHHHHHHHHHccCCCEEEEecCccc----chHHHHHHHHHHHhcCCCCeEEE-EeCCCCH
Confidence 344444445666665444 46655 67889999999999975432 12222222 22322212356666 5777778
Q ss_pred HHHHHHHHcCCCEEE
Q 019244 267 TDVFKALALGASGIF 281 (344)
Q Consensus 267 ~dv~kalalGAd~V~ 281 (344)
.|..+...+|.+.|.
T Consensus 131 ~d~~~l~~~Gv~~iF 145 (168)
T d7reqa2 131 QDFDELRKDGAVEIY 145 (168)
T ss_dssp GGHHHHHHHTEEEEE
T ss_pred HHHHHHHhCCCCEEE
Confidence 999888899998865
|
| >d1izca_ c.1.12.5 (A:) Macrophomate synthase {Macrophoma commelinae [TaxId: 108330]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: HpcH/HpaI aldolase domain: Macrophomate synthase species: Macrophoma commelinae [TaxId: 108330]
Probab=85.82 E-value=3.6 Score=35.66 Aligned_cols=71 Identities=15% Similarity=0.173 Sum_probs=47.1
Q ss_pred cCHHHHHHHHHcCCcEEEEcc-CCCCCCCCchhhHHHHHHHHHHcc-CCC-cEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 019244 208 LTAEDARIAVQAGAAGIIVSN-HGARQLDYVPATIMALEEVVKATQ-GRI-PVFLDGGVRRGTDVFKALALGASGIFIG 283 (344)
Q Consensus 208 ~~~~~a~~~~~~G~d~I~v~~-~gG~~~~~g~~~~~~l~~i~~~~~-~~~-~via~GGIr~g~dv~kalalGAd~V~ig 283 (344)
.++..++.+..+|.|+|+++. ||. ....++..+....+... ... |++-..+ .+...+.++|-+||+.|++-
T Consensus 50 ~s~~~~e~~a~~g~D~v~iD~EHg~----~~~~~~~~~i~a~~~~~~~~~~~iVRvp~-~~~~~I~~~LD~Ga~GIivP 123 (299)
T d1izca_ 50 PSTFVTKVLAATKPDFVWIDVEHGM----FNRLELHDAIHAAQHHSEGRSLVIVRVPK-HDEVSLSTALDAGAAGIVIP 123 (299)
T ss_dssp CCHHHHHHHHHTCCSEEEEETTTSC----CCHHHHHHHHHHHHHHTTTCSEEEEECCT-TCHHHHHHHHHHTCSEEEET
T ss_pred CCHHHHHHHHcCCCCEEEEcCCCCC----CCHHHHHHHHHHHHHhCCCCCCeEEeCCC-CChHHHHHHHHhCcCeeecc
Confidence 688999999999999999987 543 22233333222222222 233 4444443 46788999999999999984
|
| >d1rvga_ c.1.10.2 (A:) Fructose-bisphosphate aldolase (FBP aldolase) {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class II FBP aldolase domain: Fructose-bisphosphate aldolase (FBP aldolase) species: Thermus aquaticus [TaxId: 271]
Probab=85.66 E-value=10 Score=32.78 Aligned_cols=110 Identities=26% Similarity=0.321 Sum_probs=73.6
Q ss_pred cCHHHHHH-HHHcCCcEEEEcc---CCCCCCCCch-hhHHHHHHHHHHccCCCcEEEecCC-------------------
Q 019244 208 LTAEDARI-AVQAGAAGIIVSN---HGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGV------------------- 263 (344)
Q Consensus 208 ~~~~~a~~-~~~~G~d~I~v~~---~gG~~~~~g~-~~~~~l~~i~~~~~~~~~via~GGI------------------- 263 (344)
.+|++|+. ..+.|+|.+-++. ||-+.....+ -.++.|.+|.+.+ ++|+..=||=
T Consensus 153 T~peea~~Fv~~TgvD~LAvaiGn~HG~Yk~~~~~~l~~~~l~~I~~~~--~~PLVlHGgS~vp~~~~~~~~~~g~~lhg 230 (305)
T d1rvga_ 153 TNPEEARIFMERTGADYLAVAIGTSHGAYKGKGRPFIDHARLERIARLV--PAPLVLHGASAVPPELVERFRASGGEIGE 230 (305)
T ss_dssp CCHHHHHHHHHHHCCSEEEECSSCCSSSBCSSSSCCCCHHHHHHHHHHC--CSCEEECSCCCCCHHHHHHHHHTTCCCCS
T ss_pred CCHHHHHHHHHHhCccHhhhhhhhhhcccCCCCcccchHHHHHHHHhcc--CCCeeccCCccccHHHHhhhcccCcccCC
Confidence 46888877 5578999999874 4432111111 3567899998887 7999987752
Q ss_pred ---CCHHHHHHHHHcCCCEEEEchHHHHHhhh-------cCh------HHHHHHHHHHHHHHHHHHHHhCCC
Q 019244 264 ---RRGTDVFKALALGASGIFIGRPVVYSLAA-------EGE------KGVRRVLEMLREEFELAMALSGCR 319 (344)
Q Consensus 264 ---r~g~dv~kalalGAd~V~ig~~~l~~~~~-------~G~------~~v~~~l~~l~~el~~~m~~~G~~ 319 (344)
-+-+|+.+++..|..=|-+++-+..+... +.. .-.....+.+++-++..|..+|+.
T Consensus 231 ~sG~~~e~i~~ai~~GV~KiNi~T~l~~a~~~~~~~~l~~~~~~~d~~~~~~~~~~a~~~~v~~~i~~fgS~ 302 (305)
T d1rvga_ 231 AAGIHPEDIKKAISLGIAKINTDTDLRLAFTALIREALNKNPKEFDPRKYLGPAREAVKEVVKSRMELFGSV 302 (305)
T ss_dssp CBCCCHHHHHHHHHTTEEEEEECHHHHHHHHHHHHHHHHHCTTCCCTHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred CCCCCHHHHHHHHHcCeEEEEeChHHHHHHHHHHHHHHHhCcCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 23688999999999999999977554221 110 113334456677777778887764
|
| >d1vr6a1 c.1.10.4 (A:1-338) 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I DAHP synthetase domain: 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) species: Thermotoga maritima [TaxId: 2336]
Probab=85.41 E-value=2.4 Score=37.58 Aligned_cols=129 Identities=22% Similarity=0.322 Sum_probs=79.2
Q ss_pred cHHHHHHHHHhcCCcEEEEee--cCHHH----HHHHHHcCCcEEEEccCCCCCCC-Cc--hhhHHHHHHHHHHccCCCcE
Q 019244 187 SWKDVKWLQTITKLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLD-YV--PATIMALEEVVKATQGRIPV 257 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v--~~~~~----a~~~~~~G~d~I~v~~~gG~~~~-~g--~~~~~~l~~i~~~~~~~~~v 257 (344)
..+.++++-+ ++.||.+|-. .++++ ++.+...|-+-|.+.-.|=+... .. ...+..++.+.+.. ..||
T Consensus 190 n~~LL~~~g~-t~kpV~lKkG~~~s~~e~l~aae~i~~~Gn~~vilcERG~~t~~~~~~~~lD~~~i~~~k~~~--~lPV 266 (338)
T d1vr6a1 190 NFRLLSKAGS-YNKPVLLKRGFMNTIEEFLLSAEYIANSGNTKIILCERGIRTFEKATRNTLDISAVPIIRKES--HLPI 266 (338)
T ss_dssp CHHHHHHHHT-TCSCEEEECCTTCCHHHHHHHHHHHHHTTCCCEEEEECCBCCSCCSSSSBCCTTHHHHHHHHB--SSCE
T ss_pred CHHHHHHhhc-cCCcEEecCccccchhhhhhhHHHHHhcCCccceeeeccccccccccccchhhcccceeeccc--cCce
Confidence 4566777766 5899999976 57766 56677899999988755532211 11 12334566555443 6899
Q ss_pred EEe----cCCCCHHH--HHHHHHcCCCEEEEchHHHHHh-hhcChHH-HHHHHHHHHHHHHHHHHHhCC
Q 019244 258 FLD----GGVRRGTD--VFKALALGASGIFIGRPVVYSL-AAEGEKG-VRRVLEMLREEFELAMALSGC 318 (344)
Q Consensus 258 ia~----GGIr~g~d--v~kalalGAd~V~ig~~~l~~~-~~~G~~~-v~~~l~~l~~el~~~m~~~G~ 318 (344)
|.| ||-|...- +..|+++|||++++-...=-.- -++|... --+-++.|.++++..-...|.
T Consensus 267 i~DpsHs~G~r~~v~~larAAvA~GadGl~iE~Hp~P~~AlsDg~q~l~~~~~~~ll~~l~~i~~~vg~ 335 (338)
T d1vr6a1 267 LVDPSHSGGRRDLVIPLSRAAIAVGAHGIIVEVHPEPEKALSDGKQSLDFELFKELVQEMKKLADALGV 335 (338)
T ss_dssp EECHHHHHCSGGGHHHHHHHHHHHTCSEEEEEBCSCGGGCSSCGGGCBCHHHHHHHHHHHHHHHHHHTC
T ss_pred eeCCCCCCCchhHHHHHHHHHHHhCCCEEEEEeCCCcccCCCCccccCCHHHHHHHHHHHHHHHHHhcc
Confidence 984 67666543 2367889999999986321100 1233321 113466777777777776664
|
| >d1wuea1 c.1.11.2 (A:1127-1367) N-acylamino acid racemase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Enterococcus faecalis [TaxId: 1351]
Probab=85.12 E-value=5.6 Score=32.58 Aligned_cols=81 Identities=19% Similarity=0.226 Sum_probs=55.7
Q ss_pred cHHHHHHHHHhcCCcEEEEee-cCHHHHHHHHHcC-CcEEEEcc--CCCCCCCCchhhHHHHHHHHHHccCCCcEEEecC
Q 019244 187 SWKDVKWLQTITKLPILVKGV-LTAEDARIAVQAG-AAGIIVSN--HGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 262 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v-~~~~~a~~~~~~G-~d~I~v~~--~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GG 262 (344)
+++.++++++.+++||..-+. .+.++...+.+.| +|.+.+.- .|| ......+..+++.. .+++...+.
T Consensus 95 ~~~~~~~l~~~~~~pIa~gE~~~~~~~~~~~i~~~~~d~i~~d~~~~GG------it~~~~i~~~a~~~--~i~v~~~~~ 166 (241)
T d1wuea1 95 DFLDHAQLQRELKTRICLDENIRSLKDCQVALALGSCRSINLKIPRVGG------IHEALKIAAFCQEN--DLLVWLGGM 166 (241)
T ss_dssp CSHHHHHHHTTCSSCEEECTTCCSHHHHHHHHHHTCCSEEEECHHHHTS------HHHHHHHHHHHHHT--TCEEEECCC
T ss_pred chhhhhhhhcccccccccCcccccchhhhhhhhhhhhhhhccccccccC------cHHHHHHHHHHHHc--CCEEEeccc
Confidence 577899999999999988775 5788888888887 78887752 233 44333444444443 688888776
Q ss_pred CCCHHHHHHHHHc
Q 019244 263 VRRGTDVFKALAL 275 (344)
Q Consensus 263 Ir~g~dv~kalal 275 (344)
..++....-.+.+
T Consensus 167 ~~~~i~~~a~~~~ 179 (241)
T d1wuea1 167 FESGVGRALNLQF 179 (241)
T ss_dssp CCCHHHHHHHHHH
T ss_pred ccccccccchhhh
Confidence 6666655544443
|
| >d1rvga_ c.1.10.2 (A:) Fructose-bisphosphate aldolase (FBP aldolase) {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class II FBP aldolase domain: Fructose-bisphosphate aldolase (FBP aldolase) species: Thermus aquaticus [TaxId: 271]
Probab=84.88 E-value=3.7 Score=35.73 Aligned_cols=44 Identities=18% Similarity=0.331 Sum_probs=35.6
Q ss_pred CCCcHHHHHHHHHhcCCcEEEEeec-----------------------CHHHHHHHHHcCCcEEEEc
Q 019244 184 RSLSWKDVKWLQTITKLPILVKGVL-----------------------TAEDARIAVQAGAAGIIVS 227 (344)
Q Consensus 184 ~~~~~~~i~~i~~~~~~PvivK~v~-----------------------~~~~a~~~~~~G~d~I~v~ 227 (344)
+.++++.+++|++.+++|+++-+.. +.++.+++++.|+.-|-++
T Consensus 187 ~~l~~~~l~~I~~~~~~PLVlHGgS~vp~~~~~~~~~~g~~lhg~sG~~~e~i~~ai~~GV~KiNi~ 253 (305)
T d1rvga_ 187 PFIDHARLERIARLVPAPLVLHGASAVPPELVERFRASGGEIGEAAGIHPEDIKKAISLGIAKINTD 253 (305)
T ss_dssp CCCCHHHHHHHHHHCCSCEEECSCCCCCHHHHHHHHHTTCCCCSCBCCCHHHHHHHHHTTEEEEEEC
T ss_pred ccchHHHHHHHHhccCCCeeccCCccccHHHHhhhcccCcccCCCCCCCHHHHHHHHHcCeEEEEeC
Confidence 4568889999999999999987742 4678888888888888774
|
| >d1i3ca_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Synechocystis sp. PCC 6803, RCP1 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator for cyanobacterial phytochrome species: Synechocystis sp. PCC 6803, RCP1 [TaxId: 1148]
Probab=84.30 E-value=6.5 Score=29.62 Aligned_cols=92 Identities=14% Similarity=0.071 Sum_probs=60.0
Q ss_pred HHHHHHHHhcCCcEEEEeecCHHHHHHHHHc--------CCcEEEEccCCCCCCCCchhhHHHHHHHHHHcc-CCCcEEE
Q 019244 189 KDVKWLQTITKLPILVKGVLTAEDARIAVQA--------GAAGIIVSNHGARQLDYVPATIMALEEVVKATQ-GRIPVFL 259 (344)
Q Consensus 189 ~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~--------G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~-~~~~via 259 (344)
+.++.+-+..+...-+-.+.+.++|...++. -.|.|.++-.-. +..-++.+.++++.-. .++|||.
T Consensus 17 ~~l~~~L~~~g~~~~v~~a~~g~~Al~~l~~~~~~~~~~~pdlIllD~~mP-----~~~G~el~~~ir~~~~~~~iPvi~ 91 (144)
T d1i3ca_ 17 RLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLNLP-----KKDGREVLAEIKQNPDLKRIPVVV 91 (144)
T ss_dssp HHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSCCS-----SSCHHHHHHHHHHCTTTTTSCEEE
T ss_pred HHHHHHHHHcCCCeEEEEECCHHHHHHHHHhchhhhccCCCCEEEEECccc-----cccchHHHHHHHhCcccCCCeEEE
Confidence 3455555544544444445677777766543 267777753210 1234567777765322 3699999
Q ss_pred ecCCCCHHHHHHHHHcCCCEEEEchHH
Q 019244 260 DGGVRRGTDVFKALALGASGIFIGRPV 286 (344)
Q Consensus 260 ~GGIr~g~dv~kalalGAd~V~ig~~~ 286 (344)
-.+-.+..+..+++.+||+... -.|+
T Consensus 92 lT~~~~~~~~~~a~~~Ga~~yl-~KP~ 117 (144)
T d1i3ca_ 92 LTTSHNEDDVIASYELHVNCYL-TKSR 117 (144)
T ss_dssp EESCCCHHHHHHHHHTTCSEEE-ECCS
T ss_pred EECCCCHHHHHHHHHCCCCEEE-ECCC
Confidence 9999999999999999999875 4565
|
| >d1a53a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=84.29 E-value=2.2 Score=36.14 Aligned_cols=73 Identities=14% Similarity=0.276 Sum_probs=54.4
Q ss_pred CHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHH
Q 019244 209 TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 287 (344)
Q Consensus 209 ~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l 287 (344)
++.+..+..+.||++|-|-+-. .+=..+++.|..+++.+ ++||+.-==|-+..++.++.++|||+|.+=-.++
T Consensus 64 d~~~~a~~~~~gA~aiSVLTd~----~~F~Gs~~dl~~v~~~~--~~PiLrKDFIid~~QI~ea~~~GADaiLLI~~~L 136 (247)
T d1a53a_ 64 DPIEYSKFMERYAVGLSILTEE----KYFNGSYETLRKIASSV--SIPILMKDFIVKESQIDDAYNLGADTVLLIVKIL 136 (247)
T ss_dssp CHHHHHHHHTTTCSEEEEECCC----TTTCCCHHHHHHHHHHC--CSCEEEESCCCSHHHHHHHHHHTCSEEEEEGGGS
T ss_pred CHHHHHHHHHhCCCeEEEecCc----cccccchHHHHHHHhcc--ccceeecccccChHHHHHHHHhhcchhhhhhhhc
Confidence 4555556778999999885310 00011467787888777 7999998889999999999999999998765554
|
| >d1piia2 c.1.2.4 (A:1-254) Indole-3-glycerophosphate synthase, IPGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Escherichia coli [TaxId: 562]
Probab=83.91 E-value=1.7 Score=36.95 Aligned_cols=74 Identities=12% Similarity=0.081 Sum_probs=54.9
Q ss_pred cCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHH
Q 019244 208 LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 287 (344)
Q Consensus 208 ~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l 287 (344)
.++.++.+..+.||++|-|-+-... +. ..++.|..+++.+ ++||+.-==|-+..++.++..+|||+|.+=-.+|
T Consensus 68 ~~p~~~a~~~~~gA~aiSVLTe~~~-F~---Gs~~~l~~v~~~~--~~PiLrKDFIid~~QI~ear~~GADavLLI~~~L 141 (254)
T d1piia2 68 FDPARIAAIYKHYASAISVLTDEKY-FQ---GSFNFLPIVSQIA--PQPILCKDFIIDPYQIYLARYYQADACLLMLSVL 141 (254)
T ss_dssp CCHHHHHHHHTTTCSEEEEECCSTT-TC---CCTTHHHHHHHHC--CSCEEEESCCCSHHHHHHHHHTTCSEEEEETTTC
T ss_pred chhHHHHHHHHhccCceEEeccccc-CC---CCHHHHHHHHhcc--ccccchhcccCcHHHHHHHHhhccchhhhhHhhh
Confidence 4566677788999999988652110 11 1345567777776 7999998889999999999999999998765443
|
| >d1w3ia_ c.1.10.1 (A:) 2-keto-3-deoxy gluconate aldolase Eda {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: 2-keto-3-deoxy gluconate aldolase Eda species: Sulfolobus solfataricus [TaxId: 2287]
Probab=83.23 E-value=0.56 Score=40.57 Aligned_cols=89 Identities=19% Similarity=0.264 Sum_probs=47.4
Q ss_pred HHHHHHcCCcEEEEccCCCCCCCCchh-hHHHHHHHHHHccCCCcEEE-ecCCCCHHHHHHHH----HcCCCEEEEchHH
Q 019244 213 ARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFL-DGGVRRGTDVFKAL----ALGASGIFIGRPV 286 (344)
Q Consensus 213 a~~~~~~G~d~I~v~~~gG~~~~~g~~-~~~~l~~i~~~~~~~~~via-~GGIr~g~dv~kal----alGAd~V~ig~~~ 286 (344)
++.+.+.|+++|.+.|+.|-...-... -.+.+..+.+. ..++++ .|+. +-.|+.+.. .+||+++++-.|+
T Consensus 26 i~~l~~~Gv~gi~~~GttGE~~~Ls~~Er~~~~~~~~~~---~~~~i~gv~~~-st~~~i~~a~~a~~~Ga~~~~~~~P~ 101 (293)
T d1w3ia_ 26 AENLIRKGIDKLFVNGTTGLGPSLSPEEKLENLKAVYDV---TNKIIFQVGGL-NLDDAIRLAKLSKDFDIVGIASYAPY 101 (293)
T ss_dssp HHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHTT---CSCEEEECCCS-CHHHHHHHHHHGGGSCCSEEEEECCC
T ss_pred HHHHHHcCCCEEEECeechhhhhCCHHHHHHHHHHHHhh---ccccccccccc-hhhhhhhhhhhhhhhccccccccccc
Confidence 445778999999997754421111111 12333333332 334333 4444 445544333 3799999998887
Q ss_pred HHHhhhcChHHHHHHHHHHHH
Q 019244 287 VYSLAAEGEKGVRRVLEMLRE 307 (344)
Q Consensus 287 l~~~~~~G~~~v~~~l~~l~~ 307 (344)
++. ....+++.++++.+.+
T Consensus 102 ~~~--~~~~~~i~~~f~~Ia~ 120 (293)
T d1w3ia_ 102 YYP--RMSEKHLVKYFKTLCE 120 (293)
T ss_dssp SCS--SCCHHHHHHHHHHHHH
T ss_pred hhc--cchHHHHHHHHHHHHH
Confidence 552 1134555555555433
|
| >d1i4na_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Thermotoga maritima [TaxId: 2336]
Probab=81.63 E-value=1.7 Score=36.87 Aligned_cols=73 Identities=16% Similarity=0.091 Sum_probs=53.0
Q ss_pred CHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHH
Q 019244 209 TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 287 (344)
Q Consensus 209 ~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l 287 (344)
++.+..+..+.||++|-|-.-..+ + ..+++.|..+++.+ ++||+.-==|-+..++..+..+|||+|.+=-.++
T Consensus 62 d~~~~a~~ye~GA~aiSVLTd~~~---F-~Gs~~~l~~vr~~~--~~PiLrKDFIid~~QI~ea~~~GADaiLLI~~~L 134 (251)
T d1i4na_ 62 SLEDFIRMYDELADAISILTEKHY---F-KGDPAFVRAARNLT--CRPILAKDFYIDTVQVKLASSVGADAILIIARIL 134 (251)
T ss_dssp CHHHHHHHHHHHCSEEEEECCCSS---S-CCCTHHHHHHHTTC--CSCEEEECCCCSTHHHHHHHHTTCSEEEEEGGGS
T ss_pred cHHHHHHHHhcCCcceEEecccCC---C-CCCHHHHHHHhhcc--cCchhhhhhhhCHHHHHHHHhhccceEEeecccc
Confidence 455555566789999988642100 0 01345677777655 7999998889999999999999999998766554
|
| >d1f61a_ c.1.12.7 (A:) Isocitrate lyase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: Isocitrate lyase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=81.57 E-value=4.6 Score=36.64 Aligned_cols=87 Identities=22% Similarity=0.223 Sum_probs=56.2
Q ss_pred CCcEEEEeecCHHHHHHHHHcCCcEEEEccCC--------CC-CCCCchhhH----HHHHHHHHHc--------------
Q 019244 199 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHG--------AR-QLDYVPATI----MALEEVVKAT-------------- 251 (344)
Q Consensus 199 ~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~g--------G~-~~~~g~~~~----~~l~~i~~~~-------------- 251 (344)
+-++..=++.++-.|..+.++|.++|.+||.+ +. ..|.+.-+. +.+..|...+
T Consensus 63 ~~~v~~~Ga~d~~~A~~~~kaGf~aiY~SG~~vaa~~s~s~~g~PD~gl~~~~ev~~~v~~I~~~~~~~d~~~~~~~~~~ 142 (418)
T d1f61a_ 63 LEWVNALGALTGNMAVQQVRAGLKAIYLSGWQVAGDANLSGHTYPDQSLYPANSVPQVVRRINNALQRADQIAKIEGDTS 142 (418)
T ss_dssp SSCEEEEBCCSHHHHHHHHHTTCSCEEECHHHHHHHCCTTCCCCCSSSCSCTTHHHHHHHHHHHHHHHHHHHHHHHTCCS
T ss_pred CCCEEecccCCHHHHHHHHHhCCCEEEechHhhhcccccccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 45777778899999999999999999999732 00 123332111 2233332221
Q ss_pred --cCCCcEEEec--CCCCHHHHHH----HHHcCCCEEEEchH
Q 019244 252 --QGRIPVFLDG--GVRRGTDVFK----ALALGASGIFIGRP 285 (344)
Q Consensus 252 --~~~~~via~G--GIr~g~dv~k----alalGAd~V~ig~~ 285 (344)
.-.+|||+|+ |..+...+.+ +..+||.+|.+---
T Consensus 143 ~~~~~~PIIaDaDtGfG~~~nv~rtvk~~i~AGaAgihiEDQ 184 (418)
T d1f61a_ 143 VENWLAPIVADGEAGFGGALNVYELQKALIAAGVAGSHWEDQ 184 (418)
T ss_dssp CSCSSCCEEEECTTCSSSHHHHHHHHHHHHHHTCSEEEEESB
T ss_pred cccccCCeEEecccccccHHHHHHHHHHHHHhCCcEEEEecc
Confidence 1148999986 6666666663 33479999988754
|
| >d1xhfa1 c.23.1.1 (A:2-122) Aerobic respiration control protein ArcA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Aerobic respiration control protein ArcA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=81.33 E-value=7.9 Score=28.14 Aligned_cols=87 Identities=14% Similarity=0.167 Sum_probs=59.6
Q ss_pred HHHHHHHhcCCcEEEEeecCHHHH-HHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHH
Q 019244 190 DVKWLQTITKLPILVKGVLTAEDA-RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 268 (344)
Q Consensus 190 ~i~~i~~~~~~PvivK~v~~~~~a-~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~d 268 (344)
.+...-+.++.- +....+.+++ ..+.+.-.|.|.++-.-. +....+.+..+++. .++|||+-.|-.+..+
T Consensus 17 ~l~~~L~~~g~~--v~~a~~~~~al~~l~~~~~dlii~D~~mp-----~~~G~~~~~~~r~~--~~~pii~lt~~~~~~~ 87 (121)
T d1xhfa1 17 TLKSIFEAEGYD--VFEATDGAEMHQILSEYDINLVIMDINLP-----GKNGLLLARELREQ--ANVALMFLTGRDNEVD 87 (121)
T ss_dssp HHHHHHHTTTCE--EEEESSHHHHHHHHHHSCCSEEEECSSCS-----SSCHHHHHHHHHHH--CCCEEEEEESCCSHHH
T ss_pred HHHHHHHHCCCE--EEEECChHHHHHHHHhcCCCEEEeecccC-----CccCcHHHHHHHhc--CCCcEEEEECCCCHHH
Confidence 444444545543 4456777776 455677788888864311 11234666666654 3799999999999999
Q ss_pred HHHHHHcCCCEEEEchHH
Q 019244 269 VFKALALGASGIFIGRPV 286 (344)
Q Consensus 269 v~kalalGAd~V~ig~~~ 286 (344)
..+++.+||+.. +..||
T Consensus 88 ~~~a~~~Ga~dy-l~KP~ 104 (121)
T d1xhfa1 88 KILGLEIGADDY-ITKPF 104 (121)
T ss_dssp HHHHHHHTCSEE-EESSC
T ss_pred HHHHHHcCCCEE-EeCCC
Confidence 999999999986 56676
|
| >d1dz3a_ c.23.1.1 (A:) Sporulation response regulator Spo0A {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Sporulation response regulator Spo0A species: Bacillus stearothermophilus [TaxId: 1422]
Probab=80.43 E-value=8.4 Score=28.04 Aligned_cols=91 Identities=13% Similarity=0.034 Sum_probs=59.0
Q ss_pred HHHHHHHhcCCcEEEEeecCHHHHHH-HHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHH
Q 019244 190 DVKWLQTITKLPILVKGVLTAEDARI-AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 268 (344)
Q Consensus 190 ~i~~i~~~~~~PvivK~v~~~~~a~~-~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~d 268 (344)
.++.+-+..+.--+|....+.++|.. +.+...|.|.++-.-. +..-++.+.++++......||+...+-.+..+
T Consensus 16 ~l~~~L~~~~~~~~v~~a~~g~~al~~~~~~~~dlillD~~mP-----~~dG~e~~~~ir~~~~~~~~ii~~t~~~~~~~ 90 (123)
T d1dz3a_ 16 LLDEYISSQPDMEVIGTAYNGQDCLQMLEEKRPDILLLDIIMP-----HLDGLAVLERIRAGFEHQPNVIMLTAFGQEDV 90 (123)
T ss_dssp HHHHHHHTSTTEEEEEEESSHHHHHHHHHHHCCSEEEEESCCS-----SSCHHHHHHHHHHHCSSCCEEEEEEETTCHHH
T ss_pred HHHHHHHhCCCcEEEEEECCHHHHHHHHHhcCCCEEEEcCCCC-----CCCHHHHHHHHHhcCCCCCeEEEEECcCCHHH
Confidence 34443333332234455567777655 4556689888865311 12345777777765544567888888889999
Q ss_pred HHHHHHcCCCEEEEchHH
Q 019244 269 VFKALALGASGIFIGRPV 286 (344)
Q Consensus 269 v~kalalGAd~V~ig~~~ 286 (344)
..+++.+||+.. +..|+
T Consensus 91 ~~~a~~~Ga~~~-l~KP~ 107 (123)
T d1dz3a_ 91 TKKAVELGASYF-ILKPF 107 (123)
T ss_dssp HHHHHHTTCEEE-EECSS
T ss_pred HHHHHHCCCCEE-EECCC
Confidence 999999999986 45676
|
| >d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: CheY protein species: Thermotoga maritima [TaxId: 2336]
Probab=80.04 E-value=8.6 Score=27.78 Aligned_cols=90 Identities=14% Similarity=0.117 Sum_probs=61.3
Q ss_pred HHHHHHHhcCCcEEEEeecCHHHH-HHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHH
Q 019244 190 DVKWLQTITKLPILVKGVLTAEDA-RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 268 (344)
Q Consensus 190 ~i~~i~~~~~~PvivK~v~~~~~a-~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~d 268 (344)
.++.+-+.++.-++ ....+.++| ..+.+.-.|.|.++-.-. +..-++.+.++++.. .++||+.-.+-.+...
T Consensus 16 ~l~~~L~~~g~~v~-~~a~~~~~al~~~~~~~~dliilD~~mp-----~~~G~e~~~~ir~~~-~~~pvi~ls~~~~~~~ 88 (118)
T d1u0sy_ 16 MLKDIITKAGYEVA-GEATNGREAVEKYKELKPDIVTMDITMP-----EMNGIDAIKEIMKID-PNAKIIVCSAMGQQAM 88 (118)
T ss_dssp HHHHHHHHTTCEEE-EEESSHHHHHHHHHHHCCSEEEEECSCG-----GGCHHHHHHHHHHHC-TTCCEEEEECTTCHHH
T ss_pred HHHHHHHHcCCceE-EEECCHHHHHHHHHhccCCEEEEecCCC-----CCCHHHHHHHHHHhC-CCCcEEEEEccCCHHH
Confidence 45555555665543 234566665 456677789988864310 123457777776553 4799999999999999
Q ss_pred HHHHHHcCCCEEEEchHHH
Q 019244 269 VFKALALGASGIFIGRPVV 287 (344)
Q Consensus 269 v~kalalGAd~V~ig~~~l 287 (344)
+.+++.+||+.. +-.|+-
T Consensus 89 ~~~a~~~Ga~~y-l~KP~~ 106 (118)
T d1u0sy_ 89 VIEAIKAGAKDF-IVKPFQ 106 (118)
T ss_dssp HHHHHHTTCCEE-EESSCC
T ss_pred HHHHHHcCCCEE-EECCCC
Confidence 999999999976 457763
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