Citrus Sinensis ID: 019253

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340----
MPVKAAQTSFRDRTFEFQSVAERLRKTVSSQNGPSSSSKADEQRSAVTLQSEFNRRASKIGLGIHHTSQKLAKLAKLAKRTSVFDDPTMEIQELTAVIKQDITALNSAVVDLQLVSNSRNDGISSDTTSHSTTVVDDLKNRLMSATKEFKEVLTMRTENLKVHESRRQLFSSTASKDSANPFVRQRPLATRSAAASTSSSPPPWANGSPSSSQLFPRKQDGESQPLLQQQQHHQQQQHHQQQQQQQMVPLQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRWLMIKIFFVLIFFLMIFLFFVA
cccccccccccccHHHHHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
cccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHc
mpvkaaqtsfrdrTFEFQSVAERLRKTvssqngpsssskadeQRSAVTLQSEFNRRAskiglgihHTSQKLAKLAKLAKrtsvfddptMEIQELTAVIKQDITALNSAVVDLQLVsnsrndgissdttshsttVVDDLKNRLMSATKEFKEVLTMRTENLKVHESRRQLfsstaskdsanpfvrqrplatrsaaastssspppwangspsssqlfprkqdgesqpllQQQQHHQQQQHHQQQQQQQMVPLQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRWLMIKIFFVLIFFLMIFLFFVA
mpvkaaqtsfrdrtfefqSVAERLrktvssqngpsssskadeqrSAVTLQSEFNRRaskiglgihhtsQKLAKLAKLAKRTSVFDDPTMEIQELTAVIKQDITALNSAVVDLQLVSNsrndgissdttshsttvvddLKNRLMSATKEFKEVLTMrtenlkvhesrrqlfsstaskdsanpfVRQRPLATRsaaastssspppwangSPSSSQLFPRKQDGESQPLLQQQQHHQQQQHHQQQQQQQMVPLQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRWLMIKIFFVLIFFLMIFLFFVA
MPVKAAQTSFRDRTFEFQSVAERLRKTVSSQNGPSSSSKADEQRSAVTLQSEFNRRASKIGLGIHHTSQklaklaklakRTSVFDDPTMEIQELTAVIKQDITALNSAVVDLQLVSNSRNDGIssdttshsttvvddLKNRLMSATKEFKEVLTMRTENLKVHESRRQLFSSTASKDSANPFVRQrplatrsaaastssspppWANGSPSSSQLFPRKQDGESQPLLqqqqhhqqqqhhqqqqqqqMVPLQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRWlmikiffvlifflmiflffvA
***********************************************************IGLGIHHTSQKLAKLAKLAKRTSVFDDPTMEIQELTAVIKQDITALNSAVVDLQLV******************************************************************************************************************************************************ESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRWLMIKIFFVLIFFLMIFLFFV*
**********RDRTFEFQS*************************************************************************ELTAVIKQDITALNSA*****************************LKNRLM*********************************************************************************************************************ALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRWLMIKIFFVLIFFLMIFLFFVA
**********RDRTFEFQSVAERLR***********************LQSEFNRRASKIGLGIHHTSQKLAKLAKLAKRTSVFDDPTMEIQELTAVIKQDITALNSAVVDLQLVSNSRNDGISSDTTSHSTTVVDDLKNRLMSATKEFKEVLTMRTENLKVHESRRQLFSSTASKDSANPFVRQ****************************************************************LQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRWLMIKIFFVLIFFLMIFLFFVA
************R*FEFQSVAERLRKT***********************SEFNRRASKIGLGIHHTSQKLAKLAKLAKRTSVFDDPTMEIQELTAVIKQDITALNSAVVDLQLVSNSR**********HSTTVVDDLKNRLMSATKEFKEVLTMRTENLKVHESRR***********************************************************************HQQQQQQQMVPLQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRWLMIKIFFVLIFFLMIFLFFVA
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MPVKAAQTSFRDRTFEFQSVAERLRKTVSSQNGPSSSSKADEQRSAVTLQSEFNRRASKIGLGIHHTSQKLAKLAKLAKRTSVFDDPTMEIQELTAVIKQDITALNSAVVDLQLVSNSRNDGISSDTTSHSTTVVDDLKNRLMSATKEFKEVLTMRTENLKVHESRRQLFSSTASKDSANPFVRQRPLATRSAAASTSSSPPPWANGSPSSSQLFPRKQDGESQPLLQQQQHHQQQQHHQQQQQQQMVPLQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRWLMIKIFFVLIFFLMIFLFFVA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query344 2.2.26 [Sep-21-2011]
Q9LK09347 Syntaxin-32 OS=Arabidopsi yes no 0.976 0.968 0.673 1e-116
Q9FFK1336 Syntaxin-31 OS=Arabidopsi no no 0.927 0.949 0.477 2e-77
Q08DB5355 Syntaxin-5 OS=Bos taurus yes no 0.819 0.794 0.390 8e-46
Q8K1E0355 Syntaxin-5 OS=Mus musculu yes no 0.825 0.8 0.383 1e-45
Q13190355 Syntaxin-5 OS=Homo sapien yes no 0.808 0.783 0.385 3e-45
Q08851355 Syntaxin-5 OS=Rattus norv no no 0.828 0.802 0.372 1e-44
O13644309 Integral membrane protein yes no 0.857 0.954 0.373 3e-44
Q24509467 Syntaxin-5 OS=Drosophila yes no 0.840 0.618 0.381 2e-41
Q20797413 Putative syntaxin-3 OS=Ca yes no 0.831 0.692 0.333 6e-36
Q01590340 Integral membrane protein yes no 0.773 0.782 0.323 5e-29
>sp|Q9LK09|SYP32_ARATH Syntaxin-32 OS=Arabidopsis thaliana GN=SYP32 PE=2 SV=1 Back     alignment and function desciption
 Score =  419 bits (1076), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 239/355 (67%), Positives = 281/355 (79%), Gaps = 19/355 (5%)

Query: 1   MPVKAAQTSFRDRTFEFQSVAERLRKTVS----SQNGPSSSSKAD-EQRSAVTLQSEFNR 55
           M  +  Q+S+RDR+ EF  + E LR++++    + N P  +++ D  +R  +  +SEFN+
Sbjct: 1   MSARHGQSSYRDRSDEFFKIVETLRRSIAPAPAANNVPYGNNRNDGARREDLINKSEFNK 60

Query: 56  RASKIGLGIHHTSQKLAKLAKLAKRTSVFDDPTMEIQELTAVIKQDITALNSAVVDLQLV 115
           RAS IGL I+ TSQKL+KLAKLAKRTSVFDDPT EIQELT VIKQ+I+ALNSA+VDLQL 
Sbjct: 61  RASHIGLAINQTSQKLSKLAKLAKRTSVFDDPTQEIQELTVVIKQEISALNSALVDLQLF 120

Query: 116 SNSRND-GISS---DTTSHSTTVVDDLKNRLMSATKEFKEVLTMRTENLKVHESRRQLFS 171
            +S+ND G +S   D ++HS TVVDDLK RLM  TKEFK+VLTMRTEN+KVHESRRQLFS
Sbjct: 121 RSSQNDEGNNSRDRDKSTHSATVVDDLKYRLMDTTKEFKDVLTMRTENMKVHESRRQLFS 180

Query: 172 STASKDSANPFVRQRPLATRSAAASTSSSPPPWANGSPSSS-QLFPRK-QDGESQPLLQQ 229
           S ASK+S NPFVRQRPLA ++AA  + S P PWANGS SSS QL P K  +GES PLLQQ
Sbjct: 181 SNASKESTNPFVRQRPLAAKAAA--SESVPLPWANGSSSSSSQLVPWKPGEGESSPLLQQ 238

Query: 230 QQHHQQQQHHQQQQQQQMVPLQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEI 289
            Q  QQQQ      QQQMVPLQD+YMQ RAEAL  VESTIHEL +IF QLAT+VSQQGEI
Sbjct: 239 SQQQQQQQ------QQQMVPLQDTYMQGRAEALHTVESTIHELSSIFTQLATMVSQQGEI 292

Query: 290 AIRIDENMDDTMANVEGAQGALLKYLNSISSNRWLMIKIFFVLIFFLMIFLFFVA 344
           AIRID+NM+DT+ANVEGAQ  L +YLNSISSNRWLM+KIFFVLI FLMIFLFFVA
Sbjct: 293 AIRIDQNMEDTLANVEGAQSQLARYLNSISSNRWLMMKIFFVLIAFLMIFLFFVA 347
Vesicle trafficking protein that functions in the secretory pathway.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9FFK1|SYP31_ARATH Syntaxin-31 OS=Arabidopsis thaliana GN=SYP31 PE=1 SV=1 Back     alignment and function description
>sp|Q08DB5|STX5_BOVIN Syntaxin-5 OS=Bos taurus GN=STX5 PE=2 SV=1 Back     alignment and function description
>sp|Q8K1E0|STX5_MOUSE Syntaxin-5 OS=Mus musculus GN=Stx5 PE=1 SV=3 Back     alignment and function description
>sp|Q13190|STX5_HUMAN Syntaxin-5 OS=Homo sapiens GN=STX5 PE=1 SV=2 Back     alignment and function description
>sp|Q08851|STX5_RAT Syntaxin-5 OS=Rattus norvegicus GN=Stx5 PE=1 SV=2 Back     alignment and function description
>sp|O13644|SED5_SCHPO Integral membrane protein sed5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sed5 PE=3 SV=1 Back     alignment and function description
>sp|Q24509|STX5_DROME Syntaxin-5 OS=Drosophila melanogaster GN=Syx5 PE=2 SV=2 Back     alignment and function description
>sp|Q20797|STX3_CAEEL Putative syntaxin-3 OS=Caenorhabditis elegans GN=syn-3 PE=3 SV=1 Back     alignment and function description
>sp|Q01590|SED5_YEAST Integral membrane protein SED5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SED5 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query344
225430105340 PREDICTED: syntaxin-32 [Vitis vinifera] 0.944 0.955 0.848 1e-137
356515506339 PREDICTED: syntaxin-32-like [Glycine max 0.933 0.946 0.788 1e-128
388499590345 unknown [Lotus japonicus] 0.936 0.933 0.758 1e-128
356507792339 PREDICTED: syntaxin-32-like [Glycine max 0.936 0.949 0.787 1e-123
255549032346 syntaxin, putative [Ricinus communis] gi 0.965 0.959 0.756 1e-123
225445330338 PREDICTED: syntaxin-32 [Vitis vinifera] 0.965 0.982 0.757 1e-122
356507790337 PREDICTED: syntaxin-32-like [Glycine max 0.936 0.955 0.777 1e-121
357136358347 PREDICTED: syntaxin-32-like [Brachypodiu 0.938 0.930 0.642 1e-119
212724026343 uncharacterized protein LOC100192511 [Ze 0.947 0.950 0.658 1e-118
326532188342 predicted protein [Hordeum vulgare subsp 0.953 0.959 0.633 1e-118
>gi|225430105|ref|XP_002284618.1| PREDICTED: syntaxin-32 [Vitis vinifera] gi|296081933|emb|CBI20938.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  493 bits (1270), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 286/337 (84%), Positives = 309/337 (91%), Gaps = 12/337 (3%)

Query: 1   MPVKAAQTSFRDRTFEFQSVAERLRKTVSS-QNGPSSSSKADEQRSAVTLQSEFNRRASK 59
           MPVK  Q+SFRDRT EF +VAERL+K+ SS QNG +S+SKA+EQR AV +QSEFN+RASK
Sbjct: 1   MPVKLQQSSFRDRTPEFLNVAERLKKSFSSTQNGANSASKAEEQRFAVAMQSEFNKRASK 60

Query: 60  IGLGIHHTSQKLAKLAKLAKRTSVFDDPTMEIQELTAVIKQDITALNSAVVDLQLVSNSR 119
           IG GIH TSQKL+KLAKLAKRTSVFDDPTMEIQELTAVIKQDITALNSAVVDLQL+SNSR
Sbjct: 61  IGFGIHQTSQKLSKLAKLAKRTSVFDDPTMEIQELTAVIKQDITALNSAVVDLQLLSNSR 120

Query: 120 ND--GISSDTTSHSTTVVDDLKNRLMSATKEFKEVLTMRTENLKVHESRRQLFSSTASKD 177
           N+   ISSDTTSHSTTVVDDLKNRLMSATKEFKEVLTMRTENLKVHE+RRQLFS TASKD
Sbjct: 121 NESGNISSDTTSHSTTVVDDLKNRLMSATKEFKEVLTMRTENLKVHENRRQLFS-TASKD 179

Query: 178 SANPFVRQRPLATRSAAASTSSSPPPWANGSPSSSQLFPRKQ-DGESQPLLQQQQHHQQQ 236
           S NPFVRQRPLATRSAA++++S PP WANGSPSSSQLFPRKQ DGESQPL+QQQQ  QQQ
Sbjct: 180 STNPFVRQRPLATRSAASASASPPP-WANGSPSSSQLFPRKQIDGESQPLIQQQQQQQQQ 238

Query: 237 QHHQQQQQQQMVPLQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDEN 296
           Q      QQQ+VPLQDSYMQSRAEALQNVESTIHEL +IFNQLATLVSQQGE+AIRIDEN
Sbjct: 239 Q------QQQLVPLQDSYMQSRAEALQNVESTIHELSSIFNQLATLVSQQGELAIRIDEN 292

Query: 297 MDDTMANVEGAQGALLKYLNSISSNRWLMIKIFFVLI 333
           MDDT+ANVEGAQGALLKYL+SISSNRWLMIKIFFVLI
Sbjct: 293 MDDTLANVEGAQGALLKYLHSISSNRWLMIKIFFVLI 329

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356515506|ref|XP_003526441.1| PREDICTED: syntaxin-32-like [Glycine max] Back     alignment and taxonomy information
>gi|388499590|gb|AFK37861.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|356507792|ref|XP_003522648.1| PREDICTED: syntaxin-32-like [Glycine max] Back     alignment and taxonomy information
>gi|255549032|ref|XP_002515572.1| syntaxin, putative [Ricinus communis] gi|223545516|gb|EEF47021.1| syntaxin, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225445330|ref|XP_002284775.1| PREDICTED: syntaxin-32 [Vitis vinifera] gi|297738869|emb|CBI28114.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356507790|ref|XP_003522647.1| PREDICTED: syntaxin-32-like [Glycine max] Back     alignment and taxonomy information
>gi|357136358|ref|XP_003569772.1| PREDICTED: syntaxin-32-like [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|212724026|ref|NP_001131203.1| uncharacterized protein LOC100192511 [Zea mays] gi|194690858|gb|ACF79513.1| unknown [Zea mays] gi|194703094|gb|ACF85631.1| unknown [Zea mays] gi|219886571|gb|ACL53660.1| unknown [Zea mays] gi|414876036|tpg|DAA53167.1| TPA: Syntaxin 32 [Zea mays] Back     alignment and taxonomy information
>gi|326532188|dbj|BAK01470.1| predicted protein [Hordeum vulgare subsp. vulgare] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query344
TAIR|locus:2166419336 SYP31 "syntaxin of plants 31" 0.488 0.5 0.417 2.3e-52
ZFIN|ZDB-GENE-040718-18302 stx5a "syntaxin 5A" [Danio rer 0.485 0.552 0.371 8.5e-43
ZFIN|ZDB-GENE-030131-1825347 stx5al "syntaxin 5A, like" [Da 0.479 0.475 0.350 3.9e-39
UNIPROTKB|Q08DB5355 STX5 "Syntaxin-5" [Bos taurus 0.456 0.442 0.368 4.9e-39
MGI|MGI:1928483355 Stx5a "syntaxin 5A" [Mus muscu 0.456 0.442 0.368 9e-39
UNIPROTKB|I3LPE5355 STX5 "Uncharacterized protein" 0.456 0.442 0.368 1e-38
UNIPROTKB|E2R287355 STX5 "Uncharacterized protein" 0.456 0.442 0.361 1.2e-38
UNIPROTKB|Q13190355 STX5 "Syntaxin-5" [Homo sapien 0.456 0.442 0.361 1.2e-38
RGD|68426355 Stx5 "syntaxin 5" [Rattus norv 0.456 0.442 0.355 1.6e-37
UNIPROTKB|G5EGY8329 MGCH7_ch7g683 "Integral membra 0.517 0.541 0.313 4.1e-36
TAIR|locus:2166419 SYP31 "syntaxin of plants 31" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 308 (113.5 bits), Expect = 2.3e-52, Sum P(2) = 2.3e-52
 Identities = 73/175 (41%), Positives = 104/175 (59%)

Query:     8 TSFRDRTFEFQSVAERLRKTVSSQNGPSSSSKADEQRSAVTLQ--SEFNRRASKIGLGIH 65
             ++FRDRT E  S+++ L+K  +    PS     D+  S+      SEFN++AS+IGLGI 
Sbjct:     3 STFRDRTVELHSLSQTLKKIGAI---PSVHQDEDDPASSKRSSPGSEFNKKASRIGLGIK 59

Query:    66 HTSQXXXXXXXXXXRTSVFDDPTMEIQELTAVIKQDITALNSAVVDLQLVSNSR-NDG-I 123
              TSQ          ++++F+D T+EIQELT +I+ DIT LN A+ DLQ + N    DG  
Sbjct:    60 ETSQKITRLAKLAKQSTIFNDRTVEIQELTVLIRNDITGLNMALSDLQTLQNMELADGNY 119

Query:   124 XXXXXXXXXXXXXXLKNRLMSATKEFKEVLTMRTENLKVHESRRQLFSSTASKDS 178
                           LK RLM ATK+ ++VLT R+EN+K HE+R+QLFS+  + DS
Sbjct:   120 SQDQVGHYTAVCDDLKTRLMGATKQLQDVLTTRSENMKAHENRKQLFSTKNAVDS 174
GO:0005484 "SNAP receptor activity" evidence=IEA;TAS
GO:0005794 "Golgi apparatus" evidence=ISM
GO:0006886 "intracellular protein transport" evidence=IEA;TAS
GO:0016192 "vesicle-mediated transport" evidence=IEA
GO:0006944 "cellular membrane fusion" evidence=RCA;TAS
GO:0009504 "cell plate" evidence=IDA
GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA
ZFIN|ZDB-GENE-040718-18 stx5a "syntaxin 5A" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-1825 stx5al "syntaxin 5A, like" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q08DB5 STX5 "Syntaxin-5" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:1928483 Stx5a "syntaxin 5A" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|I3LPE5 STX5 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E2R287 STX5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q13190 STX5 "Syntaxin-5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|68426 Stx5 "syntaxin 5" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|G5EGY8 MGCH7_ch7g683 "Integral membrane protein sed5" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O13644SED5_SCHPONo assigned EC number0.37310.85750.9546yesno
Q9LK09SYP32_ARATHNo assigned EC number0.67320.97670.9682yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query344
pfam0573962 pfam05739, SNARE, SNARE domain 6e-12
cd0019360 cd00193, t_SNARE, Soluble NSF (N-ethylmaleimide-se 3e-10
smart0039766 smart00397, t_SNARE, Helical region found in SNARE 4e-10
pfam00804103 pfam00804, Syntaxin, Syntaxin 6e-10
COG5325283 COG5325, COG5325, t-SNARE complex subunit, syntaxi 7e-09
COG5074280 COG5074, COG5074, t-SNARE complex subunit, syntaxi 2e-07
pfam13779820 pfam13779, DUF4175, Domain of unknown function (DU 4e-04
>gnl|CDD|203323 pfam05739, SNARE, SNARE domain Back     alignment and domain information 
 Score = 59.8 bits (146), Expect = 6e-12
 Identities = 25/62 (40%), Positives = 36/62 (58%)

Query: 258 RAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNS 317
           R EAL+ +ES+I EL  +F  +   V +QGE+  RID+N+D+T + VE A   L K    
Sbjct: 1   RDEALEELESSIGELKQLFLDMGEEVEEQGELLDRIDDNVDNTQSRVERANKRLKKAARY 60

Query: 318 IS 319
             
Sbjct: 61  QK 62

Most if not all vesicular membrane fusion events in eukaryotic cells are believed to be mediated by a conserved fusion machinery, the SNARE [soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptors] machinery. The SNARE domain is thought to act as a protein-protein interaction module in the assembly of a SNARE protein complex. Length = 62
>gnl|CDD|238115 cd00193, t_SNARE, Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent Back     alignment and domain information
>gnl|CDD|197699 smart00397, t_SNARE, Helical region found in SNAREs Back     alignment and domain information
>gnl|CDD|201451 pfam00804, Syntaxin, Syntaxin Back     alignment and domain information
>gnl|CDD|227635 COG5325, COG5325, t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|227406 COG5074, COG5074, t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 344
KOG0812311 consensus SNARE protein SED5/Syntaxin 5 [Intracell 100.0
KOG0809305 consensus SNARE protein TLG2/Syntaxin 16 [Intracel 100.0
KOG0810297 consensus SNARE protein Syntaxin 1 and related pro 100.0
KOG0811269 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Synt 99.93
COG5325283 t-SNARE complex subunit, syntaxin [Intracellular t 99.91
COG5074280 t-SNARE complex subunit, syntaxin [Intracellular t 99.91
KOG3894316 consensus SNARE protein Syntaxin 18/UFE1 [Intracel 99.67
PF0573963 SNARE: SNARE domain; InterPro: IPR000727 The proce 99.48
cd0019360 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fu 99.3
cd00179151 SynN Syntaxin N-terminus domain; syntaxins are ner 99.22
KOG3202235 consensus SNARE protein TLG1/Syntaxin 6 [Intracell 99.21
smart0039766 t_SNARE Helical region found in SNAREs. All alpha- 99.2
smart00503117 SynN Syntaxin N-terminal domain. Three-helix domai 99.03
PF00804103 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins 99.01
KOG3385118 consensus V-SNARE [Intracellular trafficking, secr 98.19
KOG0810297 consensus SNARE protein Syntaxin 1 and related pro 97.83
PF0095789 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 97.65
PF14523102 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A. 97.53
KOG1666220 consensus V-SNARE [Intracellular trafficking, secr 97.44
KOG0860116 consensus Synaptobrevin/VAMP-like protein [Intrace 97.29
PF1141629 Sed5p: Integral membrane protein Sed5p; InterPro: 97.21
PF1049687 Syntaxin-18_N: SNARE-complex protein Syntaxin-18 N 97.19
KOG0811269 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Synt 97.07
PF09753251 Use1: Membrane fusion protein Use1; InterPro: IPR0 97.07
COG5074280 t-SNARE complex subunit, syntaxin [Intracellular t 96.57
COG5325283 t-SNARE complex subunit, syntaxin [Intracellular t 96.37
KOG3251213 consensus Golgi SNAP receptor complex member [Intr 95.96
KOG3065273 consensus SNAP-25 (synaptosome-associated protein) 95.5
PF0390892 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membr 94.83
KOG2678244 consensus Predicted membrane protein [Function unk 92.92
KOG3208231 consensus SNARE protein GS28 [Intracellular traffi 92.57
KOG0809305 consensus SNARE protein TLG2/Syntaxin 16 [Intracel 92.38
PF0917797 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IP 91.11
PF1235266 V-SNARE_C: Snare region anchored in the vesicle me 87.86
PF03904230 DUF334: Domain of unknown function (DUF334); Inter 87.75
PF1077971 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemoly 87.69
PF05478 806 Prominin: Prominin; InterPro: IPR008795 The promin 87.26
PF0095789 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 87.26
PF0988959 DUF2116: Uncharacterized protein containing a Zn-r 86.86
PF0988959 DUF2116: Uncharacterized protein containing a Zn-r 85.73
KOG0860116 consensus Synaptobrevin/VAMP-like protein [Intrace 85.7
KOG0812311 consensus SNARE protein SED5/Syntaxin 5 [Intracell 84.95
PF09753251 Use1: Membrane fusion protein Use1; InterPro: IPR0 81.78
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=9.8e-52  Score=367.44  Aligned_cols=306  Identities=45%  Similarity=0.660  Sum_probs=247.5

Q ss_pred             CCcccchHHHHHHHHHHhhhcCCCCCCCCCCccch-hhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 019253            8 TSFRDRTFEFQSVAERLRKTVSSQNGPSSSSKADE-QRSAVTLQSEFNRRASKIGLGIHHTSQKLAKLAKLAKRTSVFDD   86 (344)
Q Consensus         8 ~~~~DRT~eF~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~F~~~a~~I~~~i~~i~~~l~~L~~l~~~~~~f~d   86 (344)
                      |++||||.||++++.++++++...+..    .+.+ +.....+.++|...|..|.++|..+.++|++|..|.|++++|+|
T Consensus         1 m~~rDRT~Ef~~~~~s~~~r~~~~~~~----~~~p~~~~~~~~~seF~~~A~~Ig~~is~T~~kl~kLa~lAKrks~f~D   76 (311)
T KOG0812|consen    1 MSFRDRTSEFQAAVKSLKKRNATRGVN----QADPGADKTVSQGSEFNKKASRIGKEISQTGAKLEKLAQLAKRKSLFDD   76 (311)
T ss_pred             CCcchhhHHHHHHHHHHHHHhhccccc----cCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccC
Confidence            799999999999999999987543322    1122 44667777899999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 019253           87 PTMEIQELTAVIKQDITALNSAVVDLQLVSNSRNDGISSDTTSHSTTVVDDLKNRLMSATKEFKEVLTMRTENLKVHESR  166 (344)
Q Consensus        87 ~~~eI~~lt~~Ik~~~~~~~~~I~~L~~~~~~~~~~~~~~~~~~~~nvv~~L~~~l~~ls~~F~~~q~~y~~~~k~~~~R  166 (344)
                      ++.||.+||..||+++..++..|.+|+.+.+..+...+.+...|.+|||..|..+|.+++.+|+++++.|++.+|+.+.|
T Consensus        77 r~VeI~eLT~iikqdi~sln~~i~~Lqei~~~~gn~s~~~~~~Hs~~vV~~Lqs~la~is~~fk~VLE~Rtenmka~k~R  156 (311)
T KOG0812|consen   77 RPVEIQELTFIIKQDITSLNSQIAQLQEIVKANGNLSNKQLVQHSKNVVVSLQSKLANISKDFKDVLEIRTENMKAVKNR  156 (311)
T ss_pred             cchhhHHHHHHHhcchHHHHHHHHHHHHHHHHhccccchHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhH
Confidence            99999999999999999999999999998744332123455899999999999999999999999999999999999999


Q ss_pred             hhhccccCCCCCCCcccccCCccccccccCCCCCCCCCCCC----CCCCCcCCCCCcCCCCCchhhhhhhhhhhhhhhHH
Q 019253          167 RQLFSSTASKDSANPFVRQRPLATRSAAASTSSSPPPWANG----SPSSSQLFPRKQDGESQPLLQQQQHHQQQQHHQQQ  242 (344)
Q Consensus       167 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~~~~~----~~~~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~  242 (344)
                      +.+|....+.....|..+            ..+.+.+|..-    ......+.....+|.+.              . ++
T Consensus       157 ~dkfs~~~a~~~a~p~~n------------~~a~~~~~~~l~~~~~~~sq~~~~ln~gd~~~--------------~-qq  209 (311)
T KOG0812|consen  157 RDKFSASYASLNANPVSN------------SAARLHPLKLLVDPKDEASQDVESLNMGDSSN--------------P-QQ  209 (311)
T ss_pred             HHHhccccCCCCCcccCc------------ccccCCchhhhcCchhhcccccccccccCCCC--------------C-HH
Confidence            999976533322123210            00111111100    00001110000111110              1 35


Q ss_pred             HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccCc
Q 019253          243 QQQQMVPLQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNR  322 (344)
Q Consensus       243 ~Q~~l~~~~~~~~~~r~~~i~~ie~~i~eL~~lf~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~ka~~~~~~~r  322 (344)
                      +|++++++.++|+++|..++++||.+|.||++||.+||+||.+|||++.|||+||+++..||+.|+.+|.|++++.++||
T Consensus       210 qQm~ll~es~~Y~Q~R~~~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA~~ellKy~e~vSSNR  289 (311)
T KOG0812|consen  210 QQMALLDESDEYVQERAKTMQNIESTISELGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIEGAHSELLKYFERVSSNR  289 (311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHhccch
Confidence            67777888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhC
Q 019253          323 WLMIKIFFVLIFFLMIFLFFVA  344 (344)
Q Consensus       323 ~~~~~i~~vl~~~~l~~~~~~~  344 (344)
                      |+++.||+|||||+|+|+||++
T Consensus       290 wLmvkiF~i~ivFflvfvlf~~  311 (311)
T KOG0812|consen  290 WLMVKIFGILIVFFLVFVLFLA  311 (311)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999985

>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ] Back     alignment and domain information
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent Back     alignment and domain information
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain Back     alignment and domain information
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>smart00397 t_SNARE Helical region found in SNAREs Back     alignment and domain information
>smart00503 SynN Syntaxin N-terminal domain Back     alignment and domain information
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane Back     alignment and domain information
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis Back     alignment and domain information
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A Back     alignment and domain information
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF11416 Sed5p: Integral membrane protein Sed5p; InterPro: IPR021538 Sed5p interacts with Sly1p , a positive regulator of intracellular membrane fusion, allowing SM proteins to stay associated with the assembling fusion machinery Back     alignment and domain information
>PF10496 Syntaxin-18_N: SNARE-complex protein Syntaxin-18 N-terminus ; InterPro: IPR019529 This is the conserved N-terminal of Syntaxin-18 Back     alignment and domain information
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport Back     alignment and domain information
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway Back     alignment and domain information
>KOG2678 consensus Predicted membrane protein [Function unknown] Back     alignment and domain information
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle Back     alignment and domain information
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C Back     alignment and domain information
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function Back     alignment and domain information
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [] Back     alignment and domain information
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology Back     alignment and domain information
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis Back     alignment and domain information
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown Back     alignment and domain information
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown Back     alignment and domain information
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query344
3hd7_B109 Syntaxin-1A; membrane protein, coiled-coil, 4-heli 1e-20
1gl2_B65 Syntaxin 7; membrane protein, membrane fusion prot 3e-17
1dn1_B267 Syntaxin 1A, syntaxin binding protein 1; protein-p 1e-16
2xhe_B279 Syntaxin1; exocytosis, exocytosis complex, snare, 3e-15
2nps_B71 Syntaxin 13, vesicle-associated membrane protein 4 4e-14
3b5n_B69 Protein SSO1; snare complex, syntaxin, synaptobrev 5e-14
1sfc_B83 Protein (syntaxin 1A), protein (synaptobrevin 2); 5e-13
1n7s_B68 Syntaxin 1A; neuronal snare protein complex, four 6e-13
1jth_B77 Syntaxin 1A; coiled-coil, polar layer, endocytosis 1e-12
1fio_A196 SSO1 protein; four helix bundle, alpha helix, memb 1e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B Length = 109 Back     alignment and structure
 Score = 84.4 bits (209), Expect = 1e-20
 Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 4/107 (3%)

Query: 237 QHHQQQQQQQMVPLQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDEN 296
            H      +Q +    S +++R   +  +E++I EL ++F  +A LV  QGE+  RI+ N
Sbjct: 2   SHMDSSISKQAL----SEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYN 57

Query: 297 MDDTMANVEGAQGALLKYLNSISSNRWLMIKIFFVLIFFLMIFLFFV 343
           ++  +  VE A     K +   S  R   I I    +   +I    +
Sbjct: 58  VEHAVDYVERAVSDTKKAVKYQSKARRKKIMIIICCVILGIIIASTI 104
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1 Length = 65 Back     alignment and structure
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 3c98_B Length = 267 Back     alignment and structure
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis} Length = 279 Back     alignment and structure
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus} Length = 71 Back     alignment and structure
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Length = 69 Back     alignment and structure
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B Length = 83 Back     alignment and structure
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B Length = 68 Back     alignment and structure
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B Length = 77 Back     alignment and structure
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1 Length = 196 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query344
2xhe_B279 Syntaxin1; exocytosis, exocytosis complex, snare, 99.97
1dn1_B267 Syntaxin 1A, syntaxin binding protein 1; protein-p 99.97
3hd7_B109 Syntaxin-1A; membrane protein, coiled-coil, 4-heli 99.9
1jth_B77 Syntaxin 1A; coiled-coil, polar layer, endocytosis 99.86
3c98_B279 Syntaxin-1A; protein complex, alternative splicing 99.85
2nps_B71 Syntaxin 13, vesicle-associated membrane protein 4 99.84
1fio_A196 SSO1 protein; four helix bundle, alpha helix, memb 99.83
1sfc_B83 Protein (syntaxin 1A), protein (synaptobrevin 2); 99.81
3b5n_B69 Protein SSO1; snare complex, syntaxin, synaptobrev 99.81
1n7s_B68 Syntaxin 1A; neuronal snare protein complex, four 99.76
1gl2_B65 Syntaxin 7; membrane protein, membrane fusion prot 99.76
1s94_A180 S-syntaxin; three helix bundle, structural plastic 99.45
1ez3_A127 Syntaxin-1A; three helix bundle, endocytosis/exocy 99.33
2nps_D82 Syntaxin-6; vesicle fusion, snare complex, early e 98.14
2dnx_A130 Syntaxin-12; snare, HABC domain, UP and DOWN three 98.1
1gl2_D65 Syntaxin 8, vesicle transport V-snare protein VTI1 97.79
1n7s_D66 SNAP-25A; neuronal snare protein complex, four hel 97.79
3hd7_B109 Syntaxin-1A; membrane protein, coiled-coil, 4-heli 97.77
1sfc_D87 Protein (SNAP-25B), protein (synaptobrevin 2); mem 97.73
1l4a_D87 S-SNAP25 fusion protein; snare, snare complex, mem 97.46
3b5n_D64 Protein transport protein SEC9; snare complex, syn 97.35
3hd7_A91 Vesicle-associated membrane protein 2; membrane pr 97.24
1mqs_B50 SED5P, integral membrane protein SED5; SM-protein, 96.73
1nhl_A54 Synaptosomal-associated protein 23; snare, coiled- 96.14
1n7s_C79 SNAP-25A; neuronal snare protein complex, four hel 95.61
2kog_A119 Vesicle-associated membrane protein 2; synaptobrev 94.75
3b5n_C70 Protein transport protein SEC9; snare complex, syn 94.64
1l4a_C83 S-SNAP25 fusion protein; snare, snare complex, mem 92.78
1hs7_A97 Syntaxin VAM3; UP-and-DOWN three-helix bundle inse 91.66
1gl2_C65 VTI1B, vesicle transport V-snare protein VTI1-like 90.61
2nps_C81 Vesicle transport through interaction with T- snar 86.6
2c5k_T95 Syntaxin TLG1, T-snare affecting A late golgi comp 85.38
4dnd_A130 Syntaxin-10, SYN10; structural genomics, protein s 84.53
1jth_B77 Syntaxin 1A; coiled-coil, polar layer, endocytosis 84.36
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis} Back     alignment and structure
Probab=99.97  E-value=2.4e-32  Score=253.52  Aligned_cols=230  Identities=15%  Similarity=0.220  Sum_probs=156.5

Q ss_pred             hhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---CCCCC---ChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 019253           45 SAVTLQSEFNRRASKIGLGIHHTSQKLAKLAKLAKRT---SVFDD---PTMEIQELTAVIKQDITALNSAVVDLQLVSNS  118 (344)
Q Consensus        45 ~~~~~~~~F~~~a~~I~~~i~~i~~~l~~L~~l~~~~---~~f~d---~~~eI~~lt~~Ik~~~~~~~~~I~~L~~~~~~  118 (344)
                      .....+++|+..+++|...|..|..+|.+|.++|++.   +.|++   ...+|+.++..|++.++.|+..|+.|+...+.
T Consensus        38 ~~~~~~~~F~~~~~~I~~~I~~i~~~l~~L~~l~~~~l~t~~~~~~~~~~~~ie~l~~~i~~~~~~i~~~lk~l~~~~~~  117 (279)
T 2xhe_B           38 QPEPFMADFFNRVKRIRDNIEDIEQAIEQVAQLHTESLVAVSKEDRDRLNEKLQDTMARISALGNKIRADLKQIEKENKR  117 (279)
T ss_dssp             --CCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556788999999999999999999999999999874   33554   23699999999999999999999999976543


Q ss_pred             cC-----CCCCCc-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccCCCCCCCcccccCCccccc
Q 019253          119 RN-----DGISSD-TTSHSTTVVDDLKNRLMSATKEFKEVLTMRTENLKVHESRRQLFSSTASKDSANPFVRQRPLATRS  192 (344)
Q Consensus       119 ~~-----~~~~~~-~~~~~~nvv~~L~~~l~~ls~~F~~~q~~y~~~~k~~~~R~~~~~~~~~~~~~~p~~~~~~~~~~~  192 (344)
                      ..     +..++. +.+++++++..|..+|++++..|+++|..|.+++|.+..|...+.++..++.  .      +.   
T Consensus       118 ~~~~~~~~~~~~~~e~r~~k~~~~~L~~~f~~~~~~Fq~~Q~~y~e~~k~~~~R~~~i~~~~~~~e--e------~~---  186 (279)
T 2xhe_B          118 AQQEGTFEDGTVSTDLRIRQSQHSSLSRKFVKVMTRYNDVQAENKRRYGENVARQCRVVEPSLSDD--A------IQ---  186 (279)
T ss_dssp             THHHHCCSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCCSSCCCCSST--T------HH---
T ss_pred             hhhcccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHH--H------HH---
Confidence            21     112233 5699999999999999999999999999999999988776543332211100  0      00   


Q ss_pred             cccCCCCCCCCCCCCCCCCCcCCCCCcCCCCCchhhhhhhhhhhhhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 019253          193 AAASTSSSPPPWANGSPSSSQLFPRKQDGESQPLLQQQQHHQQQQHHQQQQQQQMVPLQDSYMQSRAEALQNVESTIHEL  272 (344)
Q Consensus       193 ~~~~~~~~p~~~~~~~~~~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~Q~~l~~~~~~~~~~r~~~i~~ie~~i~eL  272 (344)
                                          .+++.  ++..              .+ ++.+.+.......++++|+++|.+|+++|.||
T Consensus       187 --------------------~~~e~--g~~~--------------~f-~q~~~~~~~~~~~~i~eR~~eI~~Ie~~i~el  229 (279)
T 2xhe_B          187 --------------------KVIEH--GTEG--------------IF-SGMRLEGAEAKLNEIRDRHKDIQQLERSLLEL  229 (279)
T ss_dssp             --------------------HHHHH--C--------------------------------CTTTHHHHHHHHHHHHHHHH
T ss_pred             --------------------HHHhC--CchH--------------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                00000  0000              00 00111112234457999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccCc
Q 019253          273 GNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNR  322 (344)
Q Consensus       273 ~~lf~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~ka~~~~~~~r  322 (344)
                      ++||.+|+.||.+||++||+||+||+.|..||+.|+.+|.+|.+|++++|
T Consensus       230 ~~if~dla~lV~~Qg~~id~Ie~nv~~~~~~v~~~~~~l~kA~~~qk~~R  279 (279)
T 2xhe_B          230 HEMFTDMSTLVASQGEMIDRIEFSVEQSHNYVKKATEQVVQARHYQESAR  279 (279)
T ss_dssp             HHHHHHHHTTTTTSCSSTTCHHHHHHTCCCCC------------------
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHccC
Confidence            99999999999999999999999999999999999999999999999876
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B Back     alignment and structure
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B Back     alignment and structure
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B Back     alignment and structure
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus} Back     alignment and structure
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus} Back     alignment and structure
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1 Back     alignment and structure
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B Back     alignment and structure
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Back     alignment and structure
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B Back     alignment and structure
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1 Back     alignment and structure
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1 Back     alignment and structure
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A* Back     alignment and structure
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens} Back     alignment and structure
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1 Back     alignment and structure
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B Back     alignment and structure
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B Back     alignment and structure
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 Back     alignment and structure
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1 Back     alignment and structure
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A Back     alignment and structure
>1mqs_B SED5P, integral membrane protein SED5; SM-protein, snare, syntaxin, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} Back     alignment and structure
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1 Back     alignment and structure
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A Back     alignment and structure
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus} Back     alignment and structure
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Back     alignment and structure
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1 Back     alignment and structure
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1 Back     alignment and structure
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1 Back     alignment and structure
>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus} Back     alignment and structure
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T Back     alignment and structure
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A Back     alignment and structure
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 344
d1fioa_196 a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces c 4e-14
>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 196 Back     information, alignment and structure

class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Sso1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.9 bits (165), Expect = 4e-14
 Identities = 28/238 (11%), Positives = 69/238 (28%), Gaps = 49/238 (20%)

Query: 51  SEFNRRASKIGLGIHHTSQKLAKLAKLAKR--TSVFDDPTMEIQELTAVIKQDITALNSA 108
             F  + S+I   +      + ++  L KR  T V ++    ++          T L   
Sbjct: 5   VGFMNKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFK 64

Query: 109 VVDLQLVSNSRNDGISSDTTSHSTTVVDDLKNRLMSATKEFKEVLTMRTENLKVHESRRQ 168
           + +    +            ++     ++ + R +   ++++ V +   E  K    R+ 
Sbjct: 65  LKNEIKSAQR-----DGIHDTNKQAQAENSRQRFLKLIQDYRIVDSNYKEENKEQAKRQY 119

Query: 169 LFSSTASKDSANPFVRQRPLATRSAAASTSSSPPPWANGSPSSSQLFPRKQDGESQPLLQ 228
           +     + +                                          D     +  
Sbjct: 120 MIIQPEATE------------------------------------------DEVEAAISD 137

Query: 229 QQQHHQQQQHHQQQQQQQMVPLQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQ 286
                   Q      ++       + +Q+R + L  +E ++ EL  +FN +  LV +Q
Sbjct: 138 VGGQQIFSQALLNANRRGEAKTALAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQ 195

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query344
d1fioa_196 Sso1 {Baker's yeast (Saccharomyces cerevisiae) [Ta 99.72
d1ez3a_124 Syntaxin 1A N-terminal domain {Rat (Rattus norvegi 99.18
d1lvfa_106 Syntaxin 6, SNAP-25 homolog {Rat (Rattus norvegicu 85.32
>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Sso1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.72  E-value=3.4e-17  Score=140.69  Aligned_cols=187  Identities=16%  Similarity=0.185  Sum_probs=131.6

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCh------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCC
Q 019253           50 QSEFNRRASKIGLGIHHTSQKLAKLAKLAKRTSVFDDPT------MEIQELTAVIKQDITALNSAVVDLQLVSNSRNDGI  123 (344)
Q Consensus        50 ~~~F~~~a~~I~~~i~~i~~~l~~L~~l~~~~~~f~d~~------~eI~~lt~~Ik~~~~~~~~~I~~L~~~~~~~~~~~  123 (344)
                      ..+|++.+++|...|..|+..+..|..+|++.+...+..      .+|+.++..++..+..|...+..++..        
T Consensus         4 ~~~f~~~v~~I~~~i~~i~~~i~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~k~~~~~~~~~--------   75 (196)
T d1fioa_           4 FVGFMNKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQRD--------   75 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--------
Confidence            468999999999999999999999999999854332221      367777777777777777777766542        


Q ss_pred             CCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccCCCCCCCcccccCCccccccccCCCCCCCC
Q 019253          124 SSDTTSHSTTVVDDLKNRLMSATKEFKEVLTMRTENLKVHESRRQLFSSTASKDSANPFVRQRPLATRSAAASTSSSPPP  203 (344)
Q Consensus       124 ~~~~~~~~~nvv~~L~~~l~~ls~~F~~~q~~y~~~~k~~~~R~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~  203 (344)
                       ....+++++++..|..+|.+++..|+.++..|.+.+|++..|+..+..+...+.  .         ...          
T Consensus        76 -~~~~~~~~~~~~~l~~~l~~~~~~f~~~q~~~~~~~k~~~~r~~~~~~~~~~~~--~---------~~~----------  133 (196)
T d1fioa_          76 -GIHDTNKQAQAENSRQRFLKLIQDYRIVDSNYKEENKEQAKRQYMIIQPEATED--E---------VEA----------  133 (196)
T ss_dssp             -TTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCHH--H---------HHH----------
T ss_pred             -ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCccch--h---------hhH----------
Confidence             234578899999999999999999999999999999999888877654422110  0         000          


Q ss_pred             CCCCCCCCCcCCCCCcCCCCCchhhhhhhhhhhhhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019253          204 WANGSPSSSQLFPRKQDGESQPLLQQQQHHQQQQHHQQQQQQQMVPLQDSYMQSRAEALQNVESTIHELGNIFNQLATLV  283 (344)
Q Consensus       204 ~~~~~~~~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~Q~~l~~~~~~~~~~r~~~i~~ie~~i~eL~~lf~~l~~lV  283 (344)
                                       .... +...+  .. .....+..+.........++++|+++|.+|+++|.||++||.+||+||
T Consensus       134 -----------------~~~~-~~~~~--~~-~~~~~~~~~~~~~~~~~~~i~eR~~eI~~Ie~sI~eL~~iF~dLa~LV  192 (196)
T d1fioa_         134 -----------------AISD-VGGQQ--IF-SQALLNANRRGEAKTALAEVQARHQELLKLEKSMAELTQLFNDMEELV  192 (196)
T ss_dssp             -----------------HTSH-HHHHH--HH-HHHTC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             -----------------hhcc-ccchH--HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence                             0000 00000  00 000000111111234567899999999999999999999999999999


Q ss_pred             HHhh
Q 019253          284 SQQG  287 (344)
Q Consensus       284 ~~Qg  287 (344)
                      .+|.
T Consensus       193 ~eQ~  196 (196)
T d1fioa_         193 IEQQ  196 (196)
T ss_dssp             CCCC
T ss_pred             HccC
Confidence            9884
>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1lvfa_ a.47.2.1 (A:) Syntaxin 6, SNAP-25 homolog {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure