Citrus Sinensis ID: 019261

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340---
Protein Sequence
MMETTQNSSNNSSSSATDPQQQQQQLSSWSSPHHHQFYHHHQQHQHHLWLDSYNNNNNNSHHNPTLSFNLNSQHDATEAQPMTNLNSNQEQELEKEPMFEKPLTPSDVGKLNRLVIPKQHAEKYFPLGGGGADLGSSSSDKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKEKRLDAGDVILFERHRTDSERLFIGWRRRGATAVAQVAQAGGAAAGGCGWPRGLYPNHPYPVDVAHGHGVSAPLYQHAGSGVQSQTTSVGNSRTLRLFGVNLECQVDDKSEGSESQAEAHGHQQFNYSVEAYDSNSTNRHNHVVGQFNCLCYRHGVIANKIMSN
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHHHHHHccccccccEEEEcccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccEEEEccccccccccccEEEEHHHHHHHccccccccccccccccccEEEEEEcccccEEEEEEEEEcccccEEEcccHHHHHHHcccccccEEEEEEEccccccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccHHHHHHcccccccHHHHHcHHHHcHcccHHHHHccccccccccEEEEEccccccccccccccccccccccccccccHccEEccccccccccccEEcHHHHHHHcccccccccccccccccEEEEEEEcccccEEEEEEEEcccccEEEEEcccHHHHHHcccccccEEEEEEccccccEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEcccccccccccccEEcccccccccccccccccccccccccEEccccEHEHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mmettqnssnnssssatdpqqqqqqlsswssphhhqfyhhhqqhQHHLWLdsynnnnnnshhnptlsfnlnsqhdateaqpmtnlnsnqeqelekepmfekpltpsdvgklnrlvipkqhaekyfplggggadlgssssdkglllsfedesgkcwrfrysywNSSQSYVLTKGWSRYVKEkrldagdvilferhrtdserlFIGWRRRGATAVAQVAQAggaaaggcgwprglypnhpypvdvahghgvsaplyqhagsgvqsqttsvgnsrtlrLFGVNlecqvddksegsesqaeahghqqfnysveaydsnstnrhnhVVGQFNCLCYRHGVIANKIMSN
Flexible Loop (DISEMBL)
mmettqnssnnssssatDPQQQQQQLSSWSSPHHHQFYHHHQQHQHHLWLDSYNNNNNNSHHNPTLSFNLNSQHDATEAQPMTNLNSNQEQELEKEPMFEKPLTPSDVGKLNRLVIPKQHAEKYFPLGGGGADLGSSSSDKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKEKRldagdvilferhrtdserlfiGWRRRGATAVAQVAQAGGAAAGGCGWPRGLYPNHPYPVDVAHGHGVSAPLYQHAGSGVQSQTTSVGNSRTLRLFGVNLECQVDDKSEGSESQAEAHGHQQFNYSVEAYDSNSTNRHNHVVGQFNCLCYRHGVIANKIMSN
Low Complexity Region (SEG)
MMETTQnssnnssssatdpqqqqqqlsswssPhhhqfyhhhqqhqhhLWLDSYnnnnnnshhnPTLSFNLNSQHDATEAQPMTNLNSNQEQELEKEPMFEKPLTPSDVGKLNRLVIPKQHAEKYFPlggggadlgssssdkglllsFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKEKRLDAGDVILFERHRTDSERLFIGWRRRgatavaqvaqaggaaaggCGWPRGLYPNHPYPVDVAHGHGVSAPLYQHAGSGVQSQTTSVGNSRTLRLFGVNLECQVDDKSEGSESQAEAHGHQQFNYSVEAYDSNSTNRHNHVVGQFNCLCYRHGVIANKIMSN
Disordered region (IsUnstruct)
***********************************************LW***************************************************************RLVIPKQHAEKYFPL***************LLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKEKRLDAGDVILFERHRTDSERLFIGWRRRGATAVAQVAQAGGAAAGGCGWPRGLYPNHPYPVDVAHGHGVSAPLYQHA**************RTLRLFGVNLECQ*********************************RHNHVVGQFNCLCYRHGVIANK****
Disordered Region (DISOPRED)
********************************HHHQFYHHHQQHQH**************************************************PMFEKPLTPSDVGKLNRLVIPKQHAEKYFPLG*************GLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKEKRLDAGDVILFERHRTDSERLFIGW**************************GLYPNHPYPV***********************************FGVNL*******************************************QFNCLCYRHGVIANKIM**
Disordered Region (DISEMBL)
***********************************************LWLDSYNNNNNNSHHNPTLSFNLNSQHDATEAQPMTNLN***********MFEKPLTPSDVGKLNRLVIPKQHAEKYFPLGGGGADLGSSSSDKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKEKRLDAGDVILFERHRTDSERLFIGWRRRGATAVAQVAQAGGAAAGGCGWPRGLYPNHPYPVDVAHGHGVSAPLYQHA***********GNSRTLRLFGVNLECQV***************HQQFNYSVEAYDSNSTNRHNHVVGQFNCLCYRHGVIANKIMSN
Disordered Region (DISPRO)
***************************SWSSPHHHQFYHHHQQHQHHLWLDSYNNNNNNSHHNPTLSFNLNSQ**********************EPMFEKPLTPSDVGKLNRLVIPKQHAEKYFPLGGGGA*L****SDKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKEKRLDAGDVILFERHRTDSERLFIGWRRRGA***********AAAGGCGWPRGLYPNHPYPVDVAHGHGVSAPLYQHAGSGVQSQTTSVGNSRTLRLFGVNLECQVDDK**GSESQAEAHGHQQFNYSVEAYDSNSTNRHNHVVGQFNCLCYRHGVIANKIMSN
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMETTQNSSNNSSSSATDPQQQQQQLSSWSSPHHHQFYHHHQQHQHHLWLDSYNNNNNNSHHNPTLSFNLNSQHDATEAQPMTNLNSNQEQELEKEPMFEKPLTPSDVGKLNRLVIPKQHAEKYFPLGGGGADLGSSSSDKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKEKRLDAGDVILFERHRTDSERLFIGWRRRGATAVAQVAQAGGAAAGGCGWPRGLYPNHPYPVDVAHGHGVSAPLYQHAGSGVQSQTTSVGNSRTLRLFGVNLECQVDDKSEGSESQAEAHGHQQFNYSVEAYDSNSTNRHNHVVGQFNCLCYRHGVIANKIMSN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	343	2.2.26 [Sep-21-2011]
Q9FNI3	282	B3 domain-containing prot	yes	no	0.583	0.709	0.567	1e-57
Q8RYD3	267	B3 domain-containing prot	no	no	0.603	0.775	0.526	2e-54
Q8GYJ2	244	B3 domain-containing prot	no	no	0.530	0.745	0.568	3e-54
Q53QI0	279	B3 domain-containing prot	yes	no	0.583	0.716	0.510	1e-49
O82799	310	B3 domain-containing tran	no	no	0.597	0.661	0.425	3e-44
Q9M268	299	B3 domain-containing tran	no	no	0.530	0.608	0.456	9e-44
Q7F9W2	316	B3 domain-containing prot	no	no	0.320	0.348	0.689	8e-42
Q8LMR9	311	B3 domain-containing prot	no	no	0.335	0.369	0.677	2e-41
Q6EU30	412	B3 domain-containing prot	no	no	0.338	0.281	0.642	2e-40
Q9MAN1	358	B3 domain-containing tran	no	no	0.344	0.329	0.632	9e-39

>sp|Q9FNI3|Y5625_ARATH B3 domain-containing protein At5g06250 OS=Arabidopsis thaliana GN=At5g06250 PE=2 SV=1

 Score =  223 bits (568), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 122/215 (56%), Positives = 147/215 (68%), Gaps = 15/215 (6%)

Query: 95  KEPMFEKPLTPSDVGKLNRLVIPKQHAEKYFPLGG---GGADLGSSSSDKGLLLSFEDES 151
           KE +FEK LTPSDVGKLNRLVIPKQHAEKYFPL       A   +SSS+KG+LLSFEDES
Sbjct: 42  KESLFEKSLTPSDVGKLNRLVIPKQHAEKYFPLNAVLVSSAAADTSSSEKGMLLSFEDES 101

Query: 152 GKCWRFRYSYWNSSQSYVLTKGWSRYVKEKRLDAGDVILFERHRTDSERLFIGWRRRGAT 211
           GK WRFRYSYWNSSQSYVLTKGWSR+VK+K+LD GDV+ F+RHR+DS RLFIGWRRRG  
Sbjct: 102 GKSWRFRYSYWNSSQSYVLTKGWSRFVKDKQLDPGDVVFFQRHRSDSRRLFIGWRRRGQG 161

Query: 212 AVAQVAQAGGAAAGGCGWPRGLYPNHPYPVDVAHGHGVSAPLYQHAGSGVQS-------- 263
           + + VA    A         G    H       + +  S   Y H G+ V +        
Sbjct: 162 SSSSVAATNSAVNTSS---MGALSYHQIHATSNYSNPPSHSEYSHYGAAVATAAETHSTP 218

Query: 264 QTTSVGNSRTLRLFGVNLECQVDDKSEGSESQAEA 298
            ++ VG+SRT+RLFGVNLECQ+D+ ++G +S A A
Sbjct: 219 SSSVVGSSRTVRLFGVNLECQMDE-NDGDDSVAVA 252

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RYD3|Y3158_ARATH B3 domain-containing protein At3g11580 OS=Arabidopsis thaliana GN=ARF32 PE=2 SV=1

 Score =  213 bits (542), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 128/243 (52%), Positives = 151/243 (62%), Gaps = 36/243 (14%)

Query: 59  NSHHNPTLSFNLNSQHDATEAQPMTNLNSNQEQELEKEPMFEKPLTPSDVGKLNRLVIPK 118
           N +HN TLS + + Q+D   AQ              +E +FEK LTPSDVGKLNRLVIPK
Sbjct: 4   NHYHN-TLSLHHHHQNDVAIAQ--------------RESLFEKSLTPSDVGKLNRLVIPK 48

Query: 119 QHAEKYFPL------GGGGADLGSSSSDKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTK 172
           QHAEKYFPL      GG G D+  ++++KG+LLSFEDESGKCW+FRYSYWNSSQSYVLTK
Sbjct: 49  QHAEKYFPLNNNNNNGGSGDDV--ATTEKGMLLSFEDESGKCWKFRYSYWNSSQSYVLTK 106

Query: 173 GWSRYVKEKRLDAGDVILFERHRTDSERLFIGWRRRGATAVAQVAQAGG--AAAGGCGWP 230
           GWSRYVK+K LDAGDV+ F+RHR D  RLFIGWRRRG  + +         A      + 
Sbjct: 107 GWSRYVKDKHLDAGDVVFFQRHRFDLHRLFIGWRRRGEASSSPAVSVVSQEALVNTTAYW 166

Query: 231 RGLYPNHPYPVDVAHGHGVSAPL---YQHAGSGV---QSQTTSV-GNSRTLRLFGVNLEC 283
            GL      P    H       +   Y H G+ V   QS    V G+SRT+RLFGVNLEC
Sbjct: 167 SGL----TTPYRQVHASTTYPNIHQEYSHYGAVVDHAQSIPPVVAGSSRTVRLFGVNLEC 222

Query: 284 QVD 286
             D
Sbjct: 223 HGD 225

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GYJ2|Y2608_ARATH B3 domain-containing protein At2g36080 OS=Arabidopsis thaliana GN=ARF31 PE=2 SV=1

 Score =  212 bits (540), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 124/218 (56%), Positives = 143/218 (65%), Gaps = 36/218 (16%)

Query: 94  EKEPMFEKPLTPSDVGKLNRLVIPKQHAEKYFPLGGGGADLGSSSSDKGLLLSFEDESGK 153
           EKE +FEKPLTPSDVGKLNRLVIPKQHAE+YFPL    A   + + +KGLLL FEDE GK
Sbjct: 33  EKEALFEKPLTPSDVGKLNRLVIPKQHAERYFPL----AAAAADAVEKGLLLCFEDEEGK 88

Query: 154 CWRFRYSYWNSSQSYVLTKGWSRYVKEKRLDAGDVILFERHRTDSERLFIGWRRRGATAV 213
            WRFRYSYWNSSQSYVLTKGWSRYVKEK LDAGDV+LF RHR+D  R FIGWRRRG ++ 
Sbjct: 89  PWRFRYSYWNSSQSYVLTKGWSRYVKEKHLDAGDVVLFHRHRSDGGRFFIGWRRRGDSSS 148

Query: 214 AQVAQAGGAAAGGCGWPRGLYPNHPYPVDVAHGHGVSAPLYQHAGS-GVQSQTTSVGNSR 272
           +  +             R +  N             S   Y HAG+  V+SQ    GNS+
Sbjct: 149 SSDSY------------RHVQSN------------ASLQYYPHAGAQAVESQR---GNSK 181

Query: 273 TLRLFGVNLECQVD-DKSEGSE---SQAEAHGHQQFNY 306
           TLRLFGVN+ECQ+D D SE S    S      H QF++
Sbjct: 182 TLRLFGVNMECQLDSDWSEPSTPDGSNTYTTNHDQFHF 219

Arabidopsis thaliana (taxid: 3702)

>sp|Q53QI0|Y1160_ORYSJ B3 domain-containing protein Os11g0156000 OS=Oryza sativa subsp. japonica GN=Os11g0156000 PE=2 SV=1

 Score =  197 bits (501), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 124/243 (51%), Positives = 147/243 (60%), Gaps = 43/243 (17%)

Query: 98  MFEKPLTPSDVGKLNRLVIPKQHAEKYFPLGGGGADLGSSSSDKGLLLSFEDESGKCWRF 157
           MFEKPLTPSDVGKLNRLVIPKQHAE+YFPLG G A      +DKGL+LSFEDE+G  WRF
Sbjct: 37  MFEKPLTPSDVGKLNRLVIPKQHAERYFPLGAGDA------ADKGLILSFEDEAGAPWRF 90

Query: 158 RYSYWNSSQSYVLTKGWSRYVKEKRLDAGDVILFERHRTD---SERLFIGWRRRG----- 209
           RYSYW SSQSYVLTKGWSRYVKEKRLDAGDV+ FER R      +RLFIG RRRG     
Sbjct: 91  RYSYWTSSQSYVLTKGWSRYVKEKRLDAGDVVHFERVRGSFGVGDRLFIGCRRRGDAAAA 150

Query: 210 -------ATAVAQVAQAGG----------AAAGGCGWPRGLYPNHPYPVDVAHGHGVSAP 252
                  A  VA  AQ  G          + +GG  +P     ++ Y     H HG    
Sbjct: 151 QTPAPPPAVRVAPAAQNAGEQQPWSPMCYSTSGGGSYPTSPANSYAYRRAADHDHGD--- 207

Query: 253 LYQHAGSG---VQSQTTSVGN--SRTLRLFGVNLECQVDDKSEGSESQAEAHG--HQQFN 305
              HA        S + S G+  SR LRLFGVNL+C  + +++ + + A  +G  HQQ +
Sbjct: 208 -MHHADESPRDTDSPSFSAGSAPSRRLRLFGVNLDCGPEPEAD-TTAAATMYGYMHQQSS 265

Query: 306 YSV 308
           Y+ 
Sbjct: 266 YAA 268

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O82799|NGA1_ARATH B3 domain-containing transcription factor NGA1 OS=Arabidopsis thaliana GN=NGA1 PE=1 SV=1

 Score =  179 bits (454), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 109/256 (42%), Positives = 139/256 (54%), Gaps = 51/256 (19%)

Query: 68  FNLNSQHDATEAQPMTNLNSNQEQELEKEPMFEKPLTPSDVGKLNRLVIPKQHAEKYFPL 127
            +L    D  EA+P+      +E   ++E MF+K +TPSDVGKLNRLVIPKQHAE++FPL
Sbjct: 5   LSLTRDEDEEEAKPLAEEEGAREVA-DREHMFDKVVTPSDVGKLNRLVIPKQHAERFFPL 63

Query: 128 GGGGADLGSSSSDKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKEKRLDAGD 187
                   SSS++KGLLL+FED +GK WRFRYSYWNSSQSYV+TKGWSR+VK+K+LDAGD
Sbjct: 64  D-------SSSNEKGLLLNFEDLTGKSWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGD 116

Query: 188 VILFERHRTDS---ERLFIGWRRRGATAVAQVAQAGGAAAGGCGWPR------------- 231
           ++ F+R   DS    RLFI WRRR          AG        +P              
Sbjct: 117 IVSFQRCVGDSGRDSRLFIDWRRRPKVPDHPHFAAGAMFPRFYSFPSTNYSLYNHQQQRH 176

Query: 232 ----GLYPNHPYPVDVAHGHGV--------------------SAPLYQHAGSGVQSQTTS 267
               G Y  H  P +  +G+ V                    S P+  H G   Q    +
Sbjct: 177 HHSGGGYNYHQIPREFGYGYFVRSVDQRNNPAAAVADPLVIESVPVMMH-GRANQELVGT 235

Query: 268 VGNSRTLRLFGVNLEC 283
            G  + LRLFGV++EC
Sbjct: 236 AG--KRLRLFGVDMEC 249

Regulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M268|NGA2_ARATH B3 domain-containing transcription factor NGA2 OS=Arabidopsis thaliana GN=NGA2 PE=2 SV=1

 Score =  177 bits (449), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 99/217 (45%), Positives = 131/217 (60%), Gaps = 35/217 (16%)

Query: 93  LEKEPMFEKPLTPSDVGKLNRLVIPKQHAEKYFPLGGGGADLGSSSSDKGLLLSFEDESG 152
           +E+E MF+K +TPSDVGKLNRLVIPKQHAE+YFPL        ++ S+KGLLL+FED SG
Sbjct: 17  MEREHMFDKVVTPSDVGKLNRLVIPKQHAERYFPLDNST----TNDSNKGLLLNFEDRSG 72

Query: 153 KCWRFRYSYWNSSQSYVLTKGWSRYVKEKRLDAGDVILFERHRTDSERLFIGWRRRGATA 212
             WRFRYSYWNSSQSYV+TKGWSR+VK+K+LDAGD++ F+R   + ++L+I WRRR    
Sbjct: 73  NSWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFQRDSCNKDKLYIDWRRRPKIP 132

Query: 213 VAQVAQAGGAAAGGCGWPRGLYPNHP-YPV--------------DVAHGHGVSAPLYQHA 257
                Q  GA      +PR     HP  P               D+  G+ V +    H 
Sbjct: 133 DHHHQQFAGAM-----FPRFYTFPHPQMPTNYETHNLYHRFHQRDLGIGYYVRSMERSHP 187

Query: 258 GSGVQS---------QTTSVGN--SRTLRLFGVNLEC 283
            + ++S         Q  S+ +   + LRLFGV++EC
Sbjct: 188 TAVIESVPVMMQRRAQVASMASRGEKRLRLFGVDMEC 224

Regulates lateral organ growth. Functionally redundant with NGA1, NGA3 and NGA4.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7F9W2|Y4814_ORYSJ B3 domain-containing protein Os04g0581400 OS=Oryza sativa subsp. japonica GN=Os04g0581400 PE=2 SV=2

 Score =  171 bits (433), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 82/119 (68%), Positives = 97/119 (81%), Gaps = 9/119 (7%)

Query: 93  LEKEPMFEKPLTPSDVGKLNRLVIPKQHAEKYFPLGGGGADLGSSSSDKGLLLSFEDESG 152
           +EKE MF+K +TPSDVGKLNRLVIPKQHAEKYFPL        S++++KGLLLSFED +G
Sbjct: 104 IEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLD-------SAANEKGLLLSFEDRTG 156

Query: 153 KCWRFRYSYWNSSQSYVLTKGWSRYVKEKRLDAGDVILFERHRTDS--ERLFIGWRRRG 209
           K WRFRYSYWNSSQSYV+TKGWSR+VKEKRLDAGD + F R   ++  +RLFI W+RR 
Sbjct: 157 KLWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFCRGAAEATRDRLFIDWKRRA 215

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8LMR9|Y3209_ORYSJ B3 domain-containing protein Os03g0120900 OS=Oryza sativa subsp. japonica GN=Os03g0120900 PE=2 SV=1

 Score =  170 bits (430), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 84/124 (67%), Positives = 97/124 (78%), Gaps = 9/124 (7%)

Query: 93  LEKEPMFEKPLTPSDVGKLNRLVIPKQHAEKYFPLGGGGADLGSSSSDKGLLLSFEDESG 152
           +EKE MF+K +TPSDVGKLNRLVIPKQHAEKYFPL        ++S++KGLLLSFED +G
Sbjct: 31  VEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLD-------AASNEKGLLLSFEDRTG 83

Query: 153 KCWRFRYSYWNSSQSYVLTKGWSRYVKEKRLDAGDVILFERHRTDSE--RLFIGWRRRGA 210
           K WRFRYSYWNSSQSYV+TKGWSR+VKEKRLDAGD + F R   ++   RLFI WRRR  
Sbjct: 84  KPWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFGRGVGEAARGRLFIDWRRRPD 143

Query: 211 TAVA 214
              A
Sbjct: 144 VVAA 147

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6EU30|Y2835_ORYSJ B3 domain-containing protein Os02g0683500 OS=Oryza sativa subsp. japonica GN=Os02g0683500 PE=2 SV=1

 Score =  166 bits (420), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 81/126 (64%), Positives = 98/126 (77%), Gaps = 10/126 (7%)

Query: 89  QEQELEKEPMFEKPLTPSDVGKLNRLVIPKQHAEKYFPLGGGGADLGSSSSDKGLLLSFE 148
           + + +EKE MF+K +TPSDVGKLNRLVIPKQ+AEKYFPL        +++++KGLLL+FE
Sbjct: 86  EAEVVEKEHMFDKVVTPSDVGKLNRLVIPKQYAEKYFPLD-------AAANEKGLLLNFE 138

Query: 149 DESGKCWRFRYSYWNSSQSYVLTKGWSRYVKEKRLDAGDVILFERHRTDSE---RLFIGW 205
           D +GK WRFRYSYWNSSQSYV+TKGWSR+VKEKRLDAGD + F R   D     RLFI W
Sbjct: 139 DRAGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFSRGIGDEAARHRLFIDW 198

Query: 206 RRRGAT 211
           +RR  T
Sbjct: 199 KRRADT 204

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9MAN1|NGA3_ARATH B3 domain-containing transcription factor NGA3 OS=Arabidopsis thaliana GN=NGA3 PE=2 SV=1

 Score =  160 bits (406), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 81/128 (63%), Positives = 98/128 (76%), Gaps = 10/128 (7%)

Query: 94  EKEPMFEKPLTPSDVGKLNRLVIPKQHAEKYFPLGGGGADLGSSSSDKGLLLSFEDESGK 153
           EKE MF+K +TPSDVGKLNRLVIPKQHAE+YFPL        SS++  G LL+F+D +GK
Sbjct: 51  EKEHMFDKVVTPSDVGKLNRLVIPKQHAERYFPLD-------SSNNQNGTLLNFQDRNGK 103

Query: 154 CWRFRYSYWNSSQSYVLTKGWSRYVKEKRLDAGDVILFERHRTD-SER--LFIGWRRRGA 210
            WRFRYSYWNSSQSYV+TKGWSR+VKEK+LDAGD++ F+R   D SER  L+I WR R  
Sbjct: 104 MWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGIGDESERSKLYIDWRHRPD 163

Query: 211 TAVAQVAQ 218
            ++ Q  Q
Sbjct: 164 MSLVQAHQ 171

Regulates lateral organ growth. Functionally redundant with NGA1, NGA2 and NGA4.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	343
359482026	346	PREDICTED: B3 domain-containing protein	0.615	0.609	0.600	2e-69
255579355	373	transcription factor, putative [Ricinus	0.758	0.697	0.514	2e-69
297740162	239	unnamed protein product [Vitis vinifera]	0.603	0.866	0.602	1e-66
356537126	337	PREDICTED: B3 domain-containing protein	0.580	0.590	0.602	5e-63
449437842	296	PREDICTED: B3 domain-containing protein	0.545	0.631	0.639	1e-61
449534056	281	PREDICTED: B3 domain-containing protein	0.545	0.665	0.639	1e-61
302398541	382	ABI3L domain class transcription factor	0.580	0.520	0.560	1e-60
356570873	299	PREDICTED: B3 domain-containing protein	0.740	0.849	0.507	6e-59
356498733	344	PREDICTED: B3 domain-containing protein	0.574	0.572	0.594	4e-58
388501264	302	unknown [Medicago truncatula]	0.495	0.562	0.631	8e-57

>gi|359482026|ref|XP_002275955.2| PREDICTED: B3 domain-containing protein At2g36080-like [Vitis vinifera]

 Score =  269 bits (687), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 143/238 (60%), Positives = 163/238 (68%), Gaps = 27/238 (11%)

Query: 94  EKEPMFEKPLTPSDVGKLNRLVIPKQHAEKYFPLGGGGADLGSSSSDKGLLLSFEDESGK 153
           E++PMFEKPLTPSDVGKLNRLVIPKQHAEKYFPLGG        S +KGLLLSFEDE GK
Sbjct: 104 ERQPMFEKPLTPSDVGKLNRLVIPKQHAEKYFPLGG-------DSGEKGLLLSFEDECGK 156

Query: 154 CWRFRYSYWNSSQSYVLTKGWSRYVKEKRLDAGDVILFERHRTDSERLFIGWRRRGATAV 213
           CWRFRYSYWNSSQSYVLTKGWSR+VKEKRLDAGDV+LF+R R+D++R FIGWRRR   A 
Sbjct: 157 CWRFRYSYWNSSQSYVLTKGWSRFVKEKRLDAGDVVLFQRDRSDADRFFIGWRRRAGPAQ 216

Query: 214 AQVAQAGGAAA------GGCGWPRGLYPNHPYPVDVAHGHGVSAPLYQ----HAGSGVQS 263
              A A   A          GW R  Y  H YP   +H H    P YQ    HAGS  ++
Sbjct: 217 DNPAAAPPVAVHTNTGNTSVGWTRVFYSAHAYP---SHPHAPPLP-YQPDCLHAGSVAKN 272

Query: 264 QTTSVGNSRTLRLFGVNLECQVDD----KSEGSESQAEAHGHQQFNYSVEAYDSNSTN 317
           QTT VGNS+ LRLFGVNLECQ+D+      +GS   ++   H QF    +AY SN+ N
Sbjct: 273 QTTPVGNSKRLRLFGVNLECQMDESEPSTPDGSSLSSQGPVHHQF--YPQAYSSNAYN 328

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579355|ref|XP_002530522.1| transcription factor, putative [Ricinus communis] gi|223529926|gb|EEF31854.1| transcription factor, putative [Ricinus communis]

 Score =  268 bits (686), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 164/319 (51%), Positives = 191/319 (59%), Gaps = 59/319 (18%)

Query: 27  SSWSSPHHHQFYHHHQQHQHHLWLDSYNNNNN----NSHHNPTLSFNLNSQHDATEAQPM 82
           SSW S     FY HH  HQ + WL+ Y+N+      ++  NP+L+FNLN +    E  P+
Sbjct: 48  SSWPS----HFYQHHHHHQQNSWLNPYSNSQEPDQMSTAQNPSLTFNLNHEDIEEEQDPL 103

Query: 83  TNLNSNQEQEL-----------------------EKEPMFEKPLTPSDVGKLNRLVIPKQ 119
                 +EQE                        EKE MFEKPLTPSDVGKLNRLVIPKQ
Sbjct: 104 ------EEQEKHYRNNQEQHLHQQQHHQEREEQNEKEGMFEKPLTPSDVGKLNRLVIPKQ 157

Query: 120 HAEKYFPLGGGGADLGSSSSDKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVK 179
           HAEKYFPLGG        S DKGLLLSFEDE GKCWRFRYSYWNSSQSYVLTKGWSRYVK
Sbjct: 158 HAEKYFPLGG-------DSVDKGLLLSFEDELGKCWRFRYSYWNSSQSYVLTKGWSRYVK 210

Query: 180 EKRLDAGDVILFERHRTDSERLFIGWRRRG---ATAVAQVAQAGGAAAGGCG--WPRGLY 234
           +K+LDAGDV+LFERHR D ERLFIGWRRR        +  + +G    G  G  W R LY
Sbjct: 211 DKQLDAGDVVLFERHRLDGERLFIGWRRRDNNHTNTSSCSSSSGVMVQGSSGGVWSRVLY 270

Query: 235 PNHPY-PVDVAHGHGVSA-----PLYQHAGSGVQSQTTSVGNSRTLRLFGVNLECQVDDK 288
               + P  + HG  V+      P   HAGSG Q+QT  +GNS+  RLFGVNLECQ+DD 
Sbjct: 271 SQQQHQPYQLGHGANVTTRVPYQPDCLHAGSGGQNQTIPIGNSKRFRLFGVNLECQLDDS 330

Query: 289 S----EGSESQAEAHGHQQ 303
                +GS   ++    QQ
Sbjct: 331 EPSTPDGSSMSSQGPNQQQ 349

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297740162|emb|CBI30344.3| unnamed protein product [Vitis vinifera]

 Score =  259 bits (662), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 141/234 (60%), Positives = 159/234 (67%), Gaps = 27/234 (11%)

Query: 98  MFEKPLTPSDVGKLNRLVIPKQHAEKYFPLGGGGADLGSSSSDKGLLLSFEDESGKCWRF 157
           MFEKPLTPSDVGKLNRLVIPKQHAEKYFPLGG        S +KGLLLSFEDE GKCWRF
Sbjct: 1   MFEKPLTPSDVGKLNRLVIPKQHAEKYFPLGG-------DSGEKGLLLSFEDECGKCWRF 53

Query: 158 RYSYWNSSQSYVLTKGWSRYVKEKRLDAGDVILFERHRTDSERLFIGWRRRGATAVAQVA 217
           RYSYWNSSQSYVLTKGWSR+VKEKRLDAGDV+LF+R R+D++R FIGWRRR   A    A
Sbjct: 54  RYSYWNSSQSYVLTKGWSRFVKEKRLDAGDVVLFQRDRSDADRFFIGWRRRAGPAQDNPA 113

Query: 218 QAGGAAA------GGCGWPRGLYPNHPYPVDVAHGHGVSAPLYQ----HAGSGVQSQTTS 267
            A   A          GW R  Y  H YP   +H H    P YQ    HAGS  ++QTT 
Sbjct: 114 AAPPVAVHTNTGNTSVGWTRVFYSAHAYP---SHPHAPPLP-YQPDCLHAGSVAKNQTTP 169

Query: 268 VGNSRTLRLFGVNLECQVDD----KSEGSESQAEAHGHQQFNYSVEAYDSNSTN 317
           VGNS+ LRLFGVNLECQ+D+      +GS   ++   H QF    +AY SN+ N
Sbjct: 170 VGNSKRLRLFGVNLECQMDESEPSTPDGSSLSSQGPVHHQF--YPQAYSSNAYN 221

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356537126|ref|XP_003537081.1| PREDICTED: B3 domain-containing protein At5g06250-like [Glycine max]

 Score =  247 bits (631), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 141/234 (60%), Positives = 155/234 (66%), Gaps = 35/234 (14%)

Query: 90  EQEL--EKEPMFEKPLTPSDVGKLNRLVIPKQHAEKYFPLGGGGADLGSSSSDKGLLLSF 147
           EQE+  +KEPMFEKPLTPSDVGKLNRLVIPKQHAEKYFPL G   D G S   KGLLLSF
Sbjct: 62  EQEILDDKEPMFEKPLTPSDVGKLNRLVIPKQHAEKYFPLSG---DSGGSEC-KGLLLSF 117

Query: 148 EDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKEKRLDAGDVILFERHRTDSERLFIGWRR 207
           EDESGKCWRFRYSYWNSSQSYVLTKGWSRYVK+KRLDAGDV+LFERHR D++RLFIGWRR
Sbjct: 118 EDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVLFERHRVDAQRLFIGWRR 177

Query: 208 RG-ATAVAQVAQAGGAAAGGC--------GWPRGLY-PNHPYPVDVAHGHGVSAPLYQ-- 255
           R  + A    A      +GG         GW RG Y  +HPYP    H H  S   YQ  
Sbjct: 178 RRQSDAALPPAHVSSRKSGGGDGNSNKNEGWTRGFYSAHHPYPTHHLHHHQPSP--YQQQ 235

Query: 256 ----HAGSGVQSQ---TTSVGNS--------RTLRLFGVNLECQVDDKSEGSES 294
               HAG G Q Q      VGN+        R LRLFGV++ECQ +    G  +
Sbjct: 236 HDCLHAGRGSQGQNQRMRPVGNNSSSSSSSSRVLRLFGVDMECQPEHDDSGPST 289

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437842|ref|XP_004136699.1| PREDICTED: B3 domain-containing protein At2g36080-like [Cucumis sativus]

 Score =  243 bits (620), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 131/205 (63%), Positives = 150/205 (73%), Gaps = 18/205 (8%)

Query: 97  PMFEKPLTPSDVGKLNRLVIPKQHAEKYFPLGGGGADLGSS-------SSDKGLLLSFED 149
           PMFEKPLTPSDVGKLNRLVIPKQ+AEKYFPL    A   ++       S+DKGLLLSFED
Sbjct: 40  PMFEKPLTPSDVGKLNRLVIPKQYAEKYFPLSPSAAVATAAAAAAAGDSADKGLLLSFED 99

Query: 150 ESGKCWRFRYSYWNSSQSYVLTKGWSRYVKEKRLDAGDVILFERHRTDSERLFIGWRRRG 209
           ESGK WRFRYSYWNSSQSYVLTKGWSR+VKEKRLDAGDV++FERHR D +RLFIGW++R 
Sbjct: 100 ESGKIWRFRYSYWNSSQSYVLTKGWSRFVKEKRLDAGDVVVFERHRRDGDRLFIGWKKRS 159

Query: 210 ATAV--AQVAQAGGAAAGGCGWPRGLYPNHPYPVDVAHGHGVSAPLYQ------HAGSGV 261
           A +   + VA   G   GG GW R     + YP   +H H + +P YQ      HA S V
Sbjct: 160 APSPTDSAVATGSGGVGGGGGWTRMFCSANSYP--NSHRH-LPSPPYQSSSDTPHAESSV 216

Query: 262 QSQTTSVGNSRTLRLFGVNLECQVD 286
           QSQT S+GNS+ LRLFGV+LECQ D
Sbjct: 217 QSQTVSIGNSKILRLFGVDLECQTD 241

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449534056|ref|XP_004173985.1| PREDICTED: B3 domain-containing protein At5g06250-like, partial [Cucumis sativus]

 Score =  243 bits (619), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 131/205 (63%), Positives = 150/205 (73%), Gaps = 18/205 (8%)

Query: 97  PMFEKPLTPSDVGKLNRLVIPKQHAEKYFPLGGGGADLGSS-------SSDKGLLLSFED 149
           PMFEKPLTPSDVGKLNRLVIPKQ+AEKYFPL    A   ++       S+DKGLLLSFED
Sbjct: 40  PMFEKPLTPSDVGKLNRLVIPKQYAEKYFPLSPSAAVATAAAAAAAGDSADKGLLLSFED 99

Query: 150 ESGKCWRFRYSYWNSSQSYVLTKGWSRYVKEKRLDAGDVILFERHRTDSERLFIGWRRRG 209
           ESGK WRFRYSYWNSSQSYVLTKGWSR+VKEKRLDAGDV++FERHR D +RLFIGW++R 
Sbjct: 100 ESGKIWRFRYSYWNSSQSYVLTKGWSRFVKEKRLDAGDVVVFERHRRDGDRLFIGWKKRS 159

Query: 210 ATAV--AQVAQAGGAAAGGCGWPRGLYPNHPYPVDVAHGHGVSAPLYQ------HAGSGV 261
           A +   + VA   G   GG GW R     + YP   +H H + +P YQ      HA S V
Sbjct: 160 APSPTDSAVATGSGGVGGGGGWTRMFCSANSYP--NSHRH-LPSPPYQSSSDTPHAESSV 216

Query: 262 QSQTTSVGNSRTLRLFGVNLECQVD 286
           QSQT S+GNS+ LRLFGV+LECQ D
Sbjct: 217 QSQTVSIGNSKILRLFGVDLECQTD 241

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398541|gb|ADL36565.1| ABI3L domain class transcription factor [Malus x domestica]

 Score =  239 bits (611), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 144/257 (56%), Positives = 160/257 (62%), Gaps = 58/257 (22%)

Query: 65  TLSFNLNSQHDATEAQ---------PMTNLNSNQEQELEKEPMFEKPLTPSDVGKLNRLV 115
           TL+FNLN  HDA +           P   +NS+   + EKEPMFEKPLTPSDVGKLNRLV
Sbjct: 81  TLNFNLN-HHDAVDPNESGQLQSPPPHHRVNSDDSDD-EKEPMFEKPLTPSDVGKLNRLV 138

Query: 116 IPKQHAEKYFPLGGGGADLGSSSSDKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWS 175
           IPKQHAEKYFPLG G         D GLLLSFEDESGK WRFRYSYWNSSQSYVLTKGWS
Sbjct: 139 IPKQHAEKYFPLGSG---------DSGLLLSFEDESGKSWRFRYSYWNSSQSYVLTKGWS 189

Query: 176 RYVKEKRLDAGDVILFERHRTDSERLFIGWRRRGATAV----------AQVAQAGGAAAG 225
           RYVKEKRL+AGDV+LFER R +++RL IGWRRR A             +     G ++ G
Sbjct: 190 RYVKEKRLNAGDVVLFERRRANTDRLSIGWRRRNAVPAHDSGAGGVESSSGGVGGNSSGG 249

Query: 226 GCGWPRGLY--PNH--------------PYPVDVAHGHGVSAPLYQHAGSGVQSQ--TTS 267
           G GW R  Y  P+H              PYP D  H           AGS VQ+   T S
Sbjct: 250 GGGWTRMFYFAPHHGSSYPAHQYHHSVAPYPPDCLHA----------AGSRVQNMNPTAS 299

Query: 268 VGNSRTLRLFGVNLECQ 284
           VGNS+ LRLFGVNLECQ
Sbjct: 300 VGNSKILRLFGVNLECQ 316

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356570873|ref|XP_003553608.1| PREDICTED: B3 domain-containing protein At5g06250-like [Glycine max]

 Score =  234 bits (596), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 139/274 (50%), Positives = 172/274 (62%), Gaps = 20/274 (7%)

Query: 58  NNSHHNPTLSFNLNSQHDATEAQPMTNLNSNQ-EQELEKEPMFEKPLTPSDVGKLNRLVI 116
           +NSH   T  FNLN   D  +   +++  +N   QE EKE MFEKPLTPSDVGKLNRLVI
Sbjct: 38  SNSH---TPRFNLNEDDDEEDDVVVSDKATNNLAQEQEKEAMFEKPLTPSDVGKLNRLVI 94

Query: 117 PKQHAEKYFPLGGGGADLGSSSSDKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSR 176
           PKQHAEKYFPL   G D   S++ KGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSR
Sbjct: 95  PKQHAEKYFPLDSSGGD---SAAAKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSR 151

Query: 177 YVKEKRLDAGDVILFERHRTDSERLFIGWRRR--GATAVAQVAQAGGAAAGGCGWPRGLY 234
           YVK+KRL AGDV+LF RHR   +R FI   R        A V+    + +    +P   +
Sbjct: 152 YVKDKRLHAGDVVLFHRHRAHPQRFFISCTRHQPNPNPPAHVSIRSSSYSALPAYPTHHH 211

Query: 235 PNHPYPVDVAHGHGVSAPLYQHAGSGVQSQTTSVGNS---RTLRLFGVNLECQVDDKSEG 291
            + P+P      H + AP     GS  Q++TT  GNS   R LRLFGVN+ECQ D+ ++ 
Sbjct: 212 HHLPFPYQ---PHSLHAPG---GGSQGQNETTPGGNSSSGRVLRLFGVNMECQPDNDNDS 265

Query: 292 SESQAEAHGHQQFNYSVEAYDSNSTNRHNHVVGQ 325
             S  E      +++   +Y   S+N H+H++ Q
Sbjct: 266 QNSTHECSYTHLYHHQTSSYP--SSNPHHHMLPQ 297

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356498733|ref|XP_003518204.1| PREDICTED: B3 domain-containing protein At5g06250-like [Glycine max]

 Score =  231 bits (588), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 135/227 (59%), Positives = 146/227 (64%), Gaps = 30/227 (13%)

Query: 95  KEPMFEKPLTPSDVGKLNRLVIPKQHAEKYFPLGGGGADLGSSSSDKGLLLSFEDESGKC 154
           KEPMFEKPLTPSDVGKLNRLVIPKQHAEKYFPL GG  D GSS   KGLLLSFEDESGKC
Sbjct: 71  KEPMFEKPLTPSDVGKLNRLVIPKQHAEKYFPLSGG--DSGSSEC-KGLLLSFEDESGKC 127

Query: 155 WRFRYSYWNSSQSYVLTKGWSRYVKEKRLDAGDVILFERHRTDSERLFIGWRRRG-ATAV 213
           WRFRYSYWNSSQSYVLTKGWSRYVK+KRLDAGDV+LF+RHR D++RLFIGWRRR  + A+
Sbjct: 128 WRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVLFQRHRADAQRLFIGWRRRRQSDAL 187

Query: 214 AQVAQAGGAAAG------------GCGWPRGLYPNHPYPVDVAHGHGVSAPLYQ---HAG 258
              A      +G            G GW RG YP H       H             HA 
Sbjct: 188 PPPAHVSSRKSGGDGNSSKNEGDVGVGWTRGFYPAHHPYPTHHHHPSPYHHQQDDSLHAV 247

Query: 259 SGVQSQ---TTSVGN--------SRTLRLFGVNLECQVDDKSEGSES 294
            G Q Q   T  VGN        SR LRLFGVN+ECQ +    G  +
Sbjct: 248 RGSQGQNQRTRPVGNSSSSSSSSSRVLRLFGVNMECQPEHDDSGPST 294

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388501264|gb|AFK38698.1| unknown [Medicago truncatula]

 Score =  227 bits (578), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 125/198 (63%), Positives = 139/198 (70%), Gaps = 28/198 (14%)

Query: 102 PLTPSDVGKLNRLVIPKQHAEKYFPLGGGGADLGSSSSDKGLLLSFEDESGKCWRFRYSY 161
           PLTPSDVGKLNRLVIPKQHAE+YFPL         S   KGLLLSFEDESGKCWRFRYSY
Sbjct: 64  PLTPSDVGKLNRLVIPKQHAERYFPL--------DSEEIKGLLLSFEDESGKCWRFRYSY 115

Query: 162 WNSSQSYVLTKGWSRYVKEKRLDAGDVILFERHRTDSERLFIGWRRR---GATAVAQVAQ 218
           WNSSQSYVLTKGWSRYVK+KRLDAGDV+LF+RHR   +RLFI  RRR    +T  A V++
Sbjct: 116 WNSSQSYVLTKGWSRYVKDKRLDAGDVVLFQRHRIHPQRLFISRRRRHGSNSTPPAHVSR 175

Query: 219 AGGAAAG----GCGWPRGLYPNHPYPVDVAHGHGVSAPLYQHAGSGVQSQTTSV--GN-- 270
           +  +++       GW R LYP HPYP    H H    PL  HAG G QSQ T+   GN  
Sbjct: 176 SISSSSTHGNVPMGWSRELYPAHPYP---THHH----PLSYHAGEGSQSQNTATPCGNSS 228

Query: 271 --SRTLRLFGVNLECQVD 286
             SR LRLFGVN+ECQ D
Sbjct: 229 STSRVLRLFGVNMECQPD 246

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	343
TAIR|locus:2039165	244	ABS2 "ABNORMAL SHOOT 2" [Arabi	0.367	0.516	0.656	7.7e-52
TAIR|locus:2164215	282	DPA4 "DEVELOPMENT-RELATED PcG	0.667	0.812	0.469	2.5e-49
TAIR|locus:2080782	267	AT3G11580 [Arabidopsis thalian	0.553	0.711	0.526	3.4e-45
TAIR|locus:2041404	310	NGA1 "NGATHA1" [Arabidopsis th	0.384	0.425	0.538	7.4e-40
TAIR|locus:2079537	299	NGA2 "NGATHA2" [Arabidopsis th	0.326	0.374	0.594	4e-39
TAIR|locus:2200950	358	NGA3 "NGATHA3" [Arabidopsis th	0.396	0.379	0.527	1.2e-37
TAIR|locus:2205319	344	RAV1 "related to ABI3/VP1 1" [	0.311	0.311	0.601	6e-32
TAIR|locus:2031185	361	TEM1 "TEMPRANILLO 1" [Arabidop	0.332	0.315	0.591	6e-32
TAIR|locus:2117007	333	NGA4 "NGATHA4" [Arabidopsis th	0.379	0.390	0.483	6.9e-32
TAIR|locus:2012438	352	RAV2 "related to ABI3/VP1 2" [	0.376	0.366	0.537	7.7e-32

TAIR|locus:2039165 ABS2 "ABNORMAL SHOOT 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 437 (158.9 bits), Expect = 7.7e-52, Sum P(2) = 7.7e-52
 Identities = 86/131 (65%), Positives = 92/131 (70%)

Query:    78 EAQPMTNLNSNQEQELEKEPMFEKPLTPSDVGKLNRLVIPKQHAEKYFPXXXXXXXXXXX 137
             + Q     + N   E EKE +FEKPLTPSDVGKLNRLVIPKQHAE+YFP           
Sbjct:    18 QQQQQQQQHQNDVVE-EKEALFEKPLTPSDVGKLNRLVIPKQHAERYFPLAAAAADAVEK 76

Query:   138 XXXXXXXXXFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKEKRLDAGDVILFERHRTD 197
                      FEDE GK WRFRYSYWNSSQSYVLTKGWSRYVKEK LDAGDV+LF RHR+D
Sbjct:    77 GLLLC----FEDEEGKPWRFRYSYWNSSQSYVLTKGWSRYVKEKHLDAGDVVLFHRHRSD 132

Query:   198 SERLFIGWRRR 208
               R FIGWRRR
Sbjct:   133 GGRFFIGWRRR 143

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0080167 "response to karrikin" evidence=IEP

GO:0009062 "fatty acid catabolic process" evidence=RCA

TAIR|locus:2164215 DPA4 "DEVELOPMENT-RELATED PcG TARGET IN THE APEX 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
 Identities = 115/245 (46%), Positives = 138/245 (56%)

Query:    65 TLSFNLNSQHDATEAQPMTNLNSNQEQELEKEPMFEKPLTPSDVGKLNRLVIPKQHAEKY 124
             TL +        T+    T   +    +L KE +FEK LTPSDVGKLNRLVIPKQHAEKY
Sbjct:    13 TLLWQQQQHRHTTDTSETTTTATWLHDDL-KESLFEKSLTPSDVGKLNRLVIPKQHAEKY 71

Query:   125 FPXXXXXXXXXXXXXXXXXXX---XFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKEK 181
             FP                       FEDESGK WRFRYSYWNSSQSYVLTKGWSR+VK+K
Sbjct:    72 FPLNAVLVSSAAADTSSSEKGMLLSFEDESGKSWRFRYSYWNSSQSYVLTKGWSRFVKDK 131

Query:   182 RLDAGDVILFERHRTDSERLFIGWRRRXXXXXXXXXXXXXXXXXXCGWPRGLYPNHPYPV 241
             +LD GDV+ F+RHR+DS RLFIGWRRR                       G    H    
Sbjct:   132 QLDPGDVVFFQRHRSDSRRLFIGWRRRGQGSSSSVAATNSAVNTSS---MGALSYHQIHA 188

Query:   242 DVAHGHGVSAPLYQHAGSGVQS--QTTS------VGNSRTLRLFGVNLECQVDDKSEGSE 293
                + +  S   Y H G+ V +  +T S      VG+SRT+RLFGVNLECQ+D+ ++G +
Sbjct:   189 TSNYSNPPSHSEYSHYGAAVATAAETHSTPSSSVVGSSRTVRLFGVNLECQMDE-NDGDD 247

Query:   294 SQAEA 298
             S A A
Sbjct:   248 SVAVA 252

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009062 "fatty acid catabolic process" evidence=RCA

GO:0010073 "meristem maintenance" evidence=IMP

GO:0010358 "leaf shaping" evidence=IGI

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

GO:0048366 "leaf development" evidence=IGI

TAIR|locus:2080782 AT3G11580 [Arabidopsis thaliana (taxid:3702)]

 Score = 475 (172.3 bits), Expect = 3.4e-45, P = 3.4e-45
 Identities = 108/205 (52%), Positives = 120/205 (58%)

Query:    94 EKEPMFEKPLTPSDVGKLNRLVIPKQHAEKYFPXXXXXXXXXXXXXXXXXXX----XFED 149
             ++E +FEK LTPSDVGKLNRLVIPKQHAEKYFP                        FED
Sbjct:    24 QRESLFEKSLTPSDVGKLNRLVIPKQHAEKYFPLNNNNNNGGSGDDVATTEKGMLLSFED 83

Query:   150 ESGKCWRFRYSYWNSSQSYVLTKGWSRYVKEKRLDAGDVILFERHRTDSERLFIGWRRRX 209
             ESGKCW+FRYSYWNSSQSYVLTKGWSRYVK+K LDAGDV+ F+RHR D  RLFIGWRRR 
Sbjct:    84 ESGKCWKFRYSYWNSSQSYVLTKGWSRYVKDKHLDAGDVVFFQRHRFDLHRLFIGWRRRG 143

Query:   210 XXXXXXXXXXXXXXX---XXCGWPRGLYPNHPY-PVDVAHGHGVSAPLYQHAGSGV---Q 262
                                   W  GL    PY  V  +  +      Y H G+ V   Q
Sbjct:   144 EASSSPAVSVVSQEALVNTTAYWS-GL--TTPYRQVHASTTYPNIHQEYSHYGAVVDHAQ 200

Query:   263 SQTTSV-GNSRTLRLFGVNLECQVD 286
             S    V G+SRT+RLFGVNLEC  D
Sbjct:   201 SIPPVVAGSSRTVRLFGVNLECHGD 225

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009062 "fatty acid catabolic process" evidence=RCA

TAIR|locus:2041404 NGA1 "NGATHA1" [Arabidopsis thaliana (taxid:3702)]

 Score = 375 (137.1 bits), Expect = 7.4e-40, Sum P(2) = 7.4e-40
 Identities = 77/143 (53%), Positives = 95/143 (66%)

Query:    69 NLNSQHDATEAQPMTNLNSNQEQELEKEPMFEKPLTPSDVGKLNRLVIPKQHAEKYFPXX 128
             +L    D  EA+P+      +E   ++E MF+K +TPSDVGKLNRLVIPKQHAE++FP  
Sbjct:     6 SLTRDEDEEEAKPLAEEEGAREVA-DREHMFDKVVTPSDVGKLNRLVIPKQHAERFFPLD 64

Query:   129 XXXXXXXXXXXXXXXXXXFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKEKRLDAGDV 188
                               FED +GK WRFRYSYWNSSQSYV+TKGWSR+VK+K+LDAGD+
Sbjct:    65 SSSNEKGLLLN-------FEDLTGKSWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDI 117

Query:   189 ILFERHRTDS---ERLFIGWRRR 208
             + F+R   DS    RLFI WRRR
Sbjct:   118 VSFQRCVGDSGRDSRLFIDWRRR 140

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009908 "flower development" evidence=IMP

GO:0048366 "leaf development" evidence=IMP

TAIR|locus:2079537 NGA2 "NGATHA2" [Arabidopsis thaliana (taxid:3702)]

 Score = 378 (138.1 bits), Expect = 4.0e-39, Sum P(2) = 4.0e-39
 Identities = 69/116 (59%), Positives = 85/116 (73%)

Query:    93 LEKEPMFEKPLTPSDVGKLNRLVIPKQHAEKYFPXXXXXXXXXXXXXXXXXXXXFEDESG 152
             +E+E MF+K +TPSDVGKLNRLVIPKQHAE+YFP                    FED SG
Sbjct:    17 MEREHMFDKVVTPSDVGKLNRLVIPKQHAERYFPLDNSTTNDSNKGLLLN----FEDRSG 72

Query:   153 KCWRFRYSYWNSSQSYVLTKGWSRYVKEKRLDAGDVILFERHRTDSERLFIGWRRR 208
               WRFRYSYWNSSQSYV+TKGWSR+VK+K+LDAGD++ F+R   + ++L+I WRRR
Sbjct:    73 NSWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFQRDSCNKDKLYIDWRRR 128

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009908 "flower development" evidence=IMP

GO:0048366 "leaf development" evidence=IMP

TAIR|locus:2200950 NGA3 "NGATHA3" [Arabidopsis thaliana (taxid:3702)]

 Score = 364 (133.2 bits), Expect = 1.2e-37, Sum P(2) = 1.2e-37
 Identities = 77/146 (52%), Positives = 94/146 (64%)

Query:    66 LSFNLNSQHDATEAQPMTNLNSNQEQELEKEPMFEKPLTPSDVGKLNRLVIPKQHAEKYF 125
             L+ N+ +   +  +    NL        EKE MF+K +TPSDVGKLNRLVIPKQHAE+YF
Sbjct:    23 LTSNIGASSSSGPSGNNNNLPMMMIPPPEKEHMFDKVVTPSDVGKLNRLVIPKQHAERYF 82

Query:   126 PXXXXXXXXXXXXXXXXXXXXFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKEKRLDA 185
             P                    F+D +GK WRFRYSYWNSSQSYV+TKGWSR+VKEK+LDA
Sbjct:    83 PLDSSNNQNGTLLN-------FQDRNGKMWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDA 135

Query:   186 GDVILFERHRTD-SER--LFIGWRRR 208
             GD++ F+R   D SER  L+I WR R
Sbjct:   136 GDIVSFQRGIGDESERSKLYIDWRHR 161

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009908 "flower development" evidence=IMP

GO:0048366 "leaf development" evidence=IMP

TAIR|locus:2205319 RAV1 "related to ABI3/VP1 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
 Identities = 68/113 (60%), Positives = 78/113 (69%)

Query:    96 EPMFEKPLTPSDVGKLNRLVIPKQHAEKYFPXXXXXXXXXXXXXXXXXXXXFEDESGKCW 155
             E +FEK +TPSDVGKLNRLVIPK HAEK+FP                    FED +GK W
Sbjct:   185 EALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLN------FEDVNGKVW 238

Query:   156 RFRYSYWNSSQSYVLTKGWSRYVKEKRLDAGDVILFERHRTDSERLFIGWRRR 208
             RFRYSYWNSSQSYVLTKGWSR+VKEK L AGDV+ F R     ++L+IGW+ R
Sbjct:   239 RFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSR 291

GO:0003677 "DNA binding" evidence=IEA;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009741 "response to brassinosteroid stimulus" evidence=IEP

GO:0009910 "negative regulation of flower development" evidence=IMP

GO:0048366 "leaf development" evidence=IMP

GO:0048527 "lateral root development" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

TAIR|locus:2031185 TEM1 "TEMPRANILLO 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
 Identities = 68/115 (59%), Positives = 78/115 (67%)

Query:    95 KEPMFEKPLTPSDVGKLNRLVIPKQHAEKYFPXXXXXXXXXXXXX-XXXXXXXFEDESGK 153
             +E +FEK +TPSDVGKLNRLVIPKQHAEK+FP                      ED +GK
Sbjct:   191 REVLFEKTVTPSDVGKLNRLVIPKQHAEKHFPLPAMTTAMGMNPSPTKGVLINLEDRTGK 250

Query:   154 CWRFRYSYWNSSQSYVLTKGWSRYVKEKRLDAGDVILFERHRTDSERLFIGWRRR 208
              WRFRYSYWNSSQSYVLTKGWSR+VKEK L AGDV+ FER      +L+I W+ R
Sbjct:   251 VWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVCFERSTGPDRQLYIHWKVR 305

GO:0003677 "DNA binding" evidence=IEA;NAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0009873 "ethylene mediated signaling pathway" evidence=NAS

GO:0048573 "photoperiodism, flowering" evidence=IMP

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

TAIR|locus:2117007 NGA4 "NGATHA4" [Arabidopsis thaliana (taxid:3702)]

 Score = 320 (117.7 bits), Expect = 6.9e-32, Sum P(2) = 6.9e-32
 Identities = 72/149 (48%), Positives = 90/149 (60%)

Query:    70 LNSQHDATEAQPMTNLNSNQEQELEK-EPMFEKPLTPSDVGKLNRLVIPKQHAEKYFPXX 128
             +N   +  E +  ++ ++N     E+ E MF+K LTPSDVGKLNRLVIPKQHAE +FP  
Sbjct:     6 MNLDQELAEIRASSSDHTNYFYSSERREHMFDKVLTPSDVGKLNRLVIPKQHAENFFPLE 65

Query:   129 XXXXXXXXXXXXXXXXXXFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKEKRLDAGDV 188
                               F+D++GK WRFRYSYWNSSQSYV+TKGWSR+VKEK+L AGD 
Sbjct:    66 DNQNGTVLD---------FQDKNGKMWRFRYSYWNSSQSYVMTKGWSRFVKEKKLFAGDT 116

Query:   189 ILFER-----HRTDSER----LFIGWRRR 208
             + F R          ER    +FI WR R
Sbjct:   117 VSFYRGYIPDDNAQPERRRKIMFIDWRPR 145

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009908 "flower development" evidence=IMP

GO:0048366 "leaf development" evidence=IMP

TAIR|locus:2012438 RAV2 "related to ABI3/VP1 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
 Identities = 72/134 (53%), Positives = 86/134 (64%)

Query:    75 DATEAQPMTNLNSNQEQELEKEPMFEKPLTPSDVGKLNRLVIPKQHAEKYFPXXXXXXXX 134
             DA   +  ++   N +    +E +FEK +TPSDVGKLNRLVIPKQHAEK+FP        
Sbjct:   164 DANGKRNGSSTTQNDKVLKTREVLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLPSPSPAV 223

Query:   135 XXXXXXXXXXXXFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKEKRLDAGDVILFERH 194
                         FED +GK WRFRYSYWNSSQSYVLTKGWSR+VKEK L AGDV+ FER 
Sbjct:   224 TKGVLIN-----FEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVTFERS 278

Query:   195 RTDSERLFIGWRRR 208
                  +L+I W+ R
Sbjct:   279 TGLERQLYIDWKVR 292

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0010167 "response to nitrate" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	343
pfam02362	97	pfam02362, B3, B3 DNA binding domain	4e-31
cd10017	98	cd10017, B3_DNA, Plant-specific B3-DNA binding dom	2e-29
smart01019	96	smart01019, B3, B3 DNA binding domain	3e-27
cd10015	109	cd10015, BfiI_C_EcoRII_N_B3, DNA binding domains o	2e-09

>gnl|CDD|216995 pfam02362, B3, B3 DNA binding domain

 Score =  112 bits (283), Expect = 4e-31
 Identities = 38/110 (34%), Positives = 54/110 (49%), Gaps = 14/110 (12%)

Query: 99  FEKPLTPSDVGKLNRLVIPKQHAEKYFPLGGGGADLGSSSSDKGLLLSFEDESGKCWRFR 158
           F K LTPSDV K  RLV+PK+ AE+               + KG  ++  D  GK W  +
Sbjct: 1   FVKVLTPSDVSKDGRLVLPKKFAEENGL------------NKKGQEITLLDPDGKSWTVK 48

Query: 159 YSYWNSSQSYVLTKGWSRYVKEKRLDAGDVILFERHRTDSERLFIGWRRR 208
             Y  S + Y+LT GW  +VK   L AGD ++F+       +  +G  R+
Sbjct: 49  LRYRKSGRRYLLTSGWKEFVKANGLKAGDSLVFKLD--GGGKFVVGIFRK 96

This is a family of plant transcription factors with various roles in development, the aligned region corresponds the B3 DNA binding domain as described in this domain is found in VP1/AB13 transcription factors. Some proteins also have a second AP2 DNA binding domain pfam00847 such as RAV1. DNA binding activity was demonstrated by. Length = 97

>gnl|CDD|197383 cd10017, B3_DNA, Plant-specific B3-DNA binding domain

 Score =  108 bits (271), Expect = 2e-29
 Identities = 35/103 (33%), Positives = 51/103 (49%), Gaps = 12/103 (11%)

Query: 97  PMFEKPLTPSDVGKLNRLVIPKQHAEKYFPLGGGGADLGSSSSDKGLLLSFEDESGKCWR 156
           P+F K LTPSDV  L RLV+PK+ A+ + P   G              ++ ED  GK W 
Sbjct: 1   PLFFKVLTPSDVSSLGRLVLPKKFAKAHLPPKEGVE------------VTLEDPDGKKWT 48

Query: 157 FRYSYWNSSQSYVLTKGWSRYVKEKRLDAGDVILFERHRTDSE 199
            +     +S   VL+ GW  +V+   L  GD ++FE    +S+
Sbjct: 49  VKLKKRKNSGRMVLSGGWKEFVRANGLKEGDFLVFELDGRNSK 91

The plant-specific B3 DNA binding domain superfamily includes the well-characterized auxin response factor (ARF) and the LAV (Leafy cotyledon2 [LEC2]-Abscisic acid insensitive3 [ABI3]-VAL) families, as well as the RAV (Related to ABI3 and VP1) and REM (REproductive Meristem) families. LEC2 and ABI3 have been shown to be involved in seed development, while other members of the LAV family seem to have a more general role, being expressed in many organs during plant development. Members of the ARF family bind to the auxin response element and depending on presence of an activation or repression domain, they activate or repress transcription. RAV and REM families are less studied B3 protein famillies. Length = 98

>gnl|CDD|214977 smart01019, B3, B3 DNA binding domain

 Score =  102 bits (256), Expect = 3e-27
 Identities = 37/110 (33%), Positives = 49/110 (44%), Gaps = 14/110 (12%)

Query: 99  FEKPLTPSDVGKLNRLVIPKQHAEKYFPLGGGGADLGSSSSDKGLLLSFEDESGKCWRFR 158
           F K LT SDV K  RLV+PKQ AE   P                  ++  D  GK W+ +
Sbjct: 1   FFKTLTTSDVSKHGRLVLPKQFAESNGPPLKPKE------------ITLLDPDGKSWKVK 48

Query: 159 YSYWNSSQSYVLTKGWSRYVKEKRLDAGDVILFERHRTDSERLFIGWRRR 208
             Y  SS  ++LT GW  +VK   L AGD + FE     +    +   R+
Sbjct: 49  LKYRGSSGMFLLTGGWKEFVKANGLKAGDSLTFELDG--NGEFVVSIFRK 96

Two DNA binding proteins, RAV1 and RAV2 from Arabidopsis thaliana contain two distinct amino acid sequence domains found only in higher plant species. The N-terminal regions of RAV1 and RAV2 are homologous to the AP2 DNA-binding domain (see ) present in a family of transcription factors, while the C-terminal region exhibits homology to the highly conserved C-terminal domain, designated B3, of VP1/ABI3 transcription factors. The AP2 and B3-like domains of RAV1 bind autonomously to the CAACA and CACCTG motifs, respectively, and together achieve a high affinity and specificity of binding. It has been suggested that the AP2 and B3-like domains of RAV1 are connected by a highly flexible structure enabling the two domains to bind to the CAACA and CACCTG motifs in various spacings and orientations. Length = 96

>gnl|CDD|197381 cd10015, BfiI_C_EcoRII_N_B3, DNA binding domains of BfiI, EcoRII and plant B3 proteins

 Score = 54.6 bits (131), Expect = 2e-09
 Identities = 30/112 (26%), Positives = 46/112 (41%), Gaps = 12/112 (10%)

Query: 99  FEKPLTPSDVGK----LNRLVIPKQHAEKYFPLGGGGADLGSSSSDKGLLLSFEDES-GK 153
             K L+ +D G        L IPK   EK+ P      +   S       L+  D S  +
Sbjct: 3   LIKRLSANDTGATGGHQVGLYIPKGIVEKFPPSINHTREANPSIF-----LTMHDISDCR 57

Query: 154 CWRFRYSYWNSSQSYV-LTKGWSRYVKEKRLDAGDVILFERHRTDSERLFIG 204
            W  R  ++NS+++   LT+G   +VK+  L+ GD+ L      D E     
Sbjct: 58  DWEARAIFYNSNRNEKRLTRGGRGFVKQNPLNTGDLTLIAFDL-DKEYNIRI 108

This family contains the N-terminal DNA binding domain of type IIE restriction endonuclease EcoRII-like proteins, the C-terminal DNA binding domain of type IIS restriction endonuclease BfiI-like proteins and plant-specific B3 proteins. Type II restriction endonucleases are components of restriction modification (RM) systems that protect bacteria and archaea against invading foreign DNA. They usually function as homodimers or homotetramers that cleave DNA at defined sites of 4 to 8 bp in length, and they require Mg2+, not ATP or GTP, for catalysis. EcoRII is specific for the 5'-CCWGG sequence (W stands for A or T). EcoRII consists of 2 domains, the C-terminal catalytic/dimerization domain (EcoRII-C), and the N-terminal effector DNA binding domain (EcoRII-N). BfiI is unique in cleaving DNA at fixed positions downstream of an asymmetric sequence in the absence of Mg2+. BfiI consists of two discrete domains with distinct functions: an N-terminal catalytic domain with non-specific nuclease activity and dimerization function that is more closely related to Nuc, an EDTA-resistant nuclease from the phospholipase D (PLD) superfamily; and a C-terminal domain that specifically recognizes its target sequences, 5'-ACTGGG-3'. B3 proteins are a family of plant-specific transcription factors, involved in a great variety of processes, including seed development and auxin response. Length = 109

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	343
PF02362	100	B3: B3 DNA binding domain; InterPro: IPR003340 Two	99.85
PF03754	114	DUF313: Domain of unknown function (DUF313) ; Inte	98.65
PF09217	156	EcoRII-N: Restriction endonuclease EcoRII, N-termi	98.07
PF06507	83	Auxin_resp: Auxin response factor; InterPro: IPR01	93.81

>PF02362 B3: B3 DNA binding domain; InterPro: IPR003340 Two DNA binding proteins, RAV1 and RAV2 from Arabidopsis thaliana contain two distinct amino acid sequence domains found only in higher plant species

Probab=99.85  E-value=6.7e-21  Score=151.82  Aligned_cols=99  Identities=34%  Similarity=0.564  Sum_probs=75.6

Q ss_pred             EEEecccCCCCCCCcEEeehhhHhhcCCCCCCCCCCCCCCCCCceEEEEEcCCCCeEEEEEEEecCCCceEEccChHHHH
Q 019261           99 FEKPLTPSDVGKLNRLVIPKQHAEKYFPLGGGGADLGSSSSDKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYV  178 (343)
Q Consensus        99 F~K~LT~SDVs~~gRLvIPK~~AE~~fP~l~~s~d~~~~~~~~gi~L~v~D~~Gk~W~FR~sywnssrryvLT~GWs~FV  178 (343)
                      |.|+|+++|+...++|.||+++++++...           +..++.+.++|..|++|.+++++++.+.+++|++||.+||
T Consensus         1 F~K~l~~s~~~~~~~l~iP~~f~~~~~~~-----------~~~~~~v~l~~~~g~~W~v~~~~~~~~~~~~l~~GW~~Fv   69 (100)
T PF02362_consen    1 FFKVLKPSDVSSSCRLIIPKEFAKKHGGN-----------KRKSREVTLKDPDGRSWPVKLKYRKNSGRYYLTGGWKKFV   69 (100)
T ss_dssp             EEEE--TTCCCCTT-EEE-HHHHTTTS-------------SS--CEEEEEETTTEEEEEEEEEECCTTEEEEETTHHHHH
T ss_pred             CEEEEEccCcCCCCEEEeCHHHHHHhCCC-----------cCCCeEEEEEeCCCCEEEEEEEEEccCCeEEECCCHHHHH
Confidence            89999999999889999999999998211           1235678999999999999999998888899999999999


Q ss_pred             hhcCCCCCCEEEEEEeeCCCCcEEEEEEEc
Q 019261          179 KEKRLDAGDVILFERHRTDSERLFIGWRRR  208 (343)
Q Consensus       179 kdK~LkaGD~VvF~r~~~~~g~L~IgIRR~  208 (343)
                      ++|+|++||+|+|++..+...++.|.|.|+
T Consensus        70 ~~n~L~~GD~~~F~~~~~~~~~~~v~i~~~   99 (100)
T PF02362_consen   70 RDNGLKEGDVCVFELIGNSNFTLKVHIFRK   99 (100)
T ss_dssp             HHCT--TT-EEEEEE-SSSCE-EEEEEE--
T ss_pred             HHcCCCCCCEEEEEEecCCCceEEEEEEEC
Confidence            999999999999999864455679999986

The N-terminal regions of RAV1 and RAV2 are homologous to the AP2 DNA-binding domain (see IPR001471 from INTERPRO) present in a family of transcription factors, while the C-terminal region exhibits homology to the highly conserved C-terminal domain, designated B3, of VP1/ABI3 transcription factors []. The AP2 and B3-like domains of RAV1 bind autonomously to the CAACA and CACCTG motifs, respectively, and together achieve a high affinity and specificity of binding. It has been suggested that the AP2 and B3-like domains of RAV1 are connected by a highly flexible structure enabling the two domains to bind to the CAACA and CACCTG motifs in various spacings and orientations [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1WID_A 1YEL_A.

>PF03754 DUF313: Domain of unknown function (DUF313) ; InterPro: IPR005508 This is a family of proteins from Arabidopsis thaliana (Mouse-ear cress) with uncharacterised function

Probab=98.65  E-value=3.6e-08  Score=84.14  Aligned_cols=87  Identities=25%  Similarity=0.497  Sum_probs=66.1

Q ss_pred             cCccceEEEecccCCCC-CCCcEEeehhhHhh--cCCCCCCCCCC----CCCCCCCceEEEEEcCCCCeEEEEEEEecC-
Q 019261           93 LEKEPMFEKPLTPSDVG-KLNRLVIPKQHAEK--YFPLGGGGADL----GSSSSDKGLLLSFEDESGKCWRFRYSYWNS-  164 (343)
Q Consensus        93 ~~k~~lF~K~LT~SDVs-~~gRLvIPK~~AE~--~fP~l~~s~d~----~~~~~~~gi~L~v~D~~Gk~W~FR~sywns-  164 (343)
                      .+...+++|+|+.|||. .++||+||......  +|-..+. +.+    .......|+.+.+.|..++.|..+++.|.. 
T Consensus        18 ~d~kli~~K~L~~tDv~~~qsRLsmP~~qi~~~dFLt~eE~-~~i~~~~~~~~~~~Gv~V~lvdp~~~~~~m~lkkW~mg   96 (114)
T PF03754_consen   18 EDPKLIIEKTLFKTDVDPHQSRLSMPFNQIIDNDFLTEEEK-RIIKEEKKNNDKKKGVEVILVDPSLRKWTMRLKKWNMG   96 (114)
T ss_pred             CCCeEEEeeeecccCCCCCCceeeccHHHhcccccCCHHHH-HHHHHhhccCcccCCceEEEECCcCcEEEEEEEEeccc
Confidence            34578999999999998 67899999988744  2322111 001    012346789999999999999999999965 


Q ss_pred             --CCceEEccChHHHHhh
Q 019261          165 --SQSYVLTKGWSRYVKE  180 (343)
Q Consensus       165 --srryvLT~GWs~FVkd  180 (343)
                        ...|+|.+||.++|++
T Consensus        97 ~~~~~YvL~~gWn~VV~~  114 (114)
T PF03754_consen   97 NGTSNYVLNSGWNKVVED  114 (114)
T ss_pred             CCceEEEEEcChHhhccC
Confidence              4689999999999874

>PF09217 EcoRII-N: Restriction endonuclease EcoRII, N-terminal; InterPro: IPR023372 There are four classes of restriction endonucleases: types I, II,III and IV

Probab=98.07  E-value=1.5e-05  Score=71.48  Aligned_cols=94  Identities=21%  Similarity=0.351  Sum_probs=58.5

Q ss_pred             CccceEEEecccCCCCCC----CcEEeehhhHhhcCCCCCCCCCCCCCCCCCceEEEEEcCCC--CeEEEEEEEecC---
Q 019261           94 EKEPMFEKPLTPSDVGKL----NRLVIPKQHAEKYFPLGGGGADLGSSSSDKGLLLSFEDESG--KCWRFRYSYWNS---  164 (343)
Q Consensus        94 ~k~~lF~K~LT~SDVs~~----gRLvIPK~~AE~~fP~l~~s~d~~~~~~~~gi~L~v~D~~G--k~W~FR~sywns---  164 (343)
                      ....+|+|.|++.|++..    .++.|||..++.+||.+....     ..++.+.|.+++..+  ..|+||++|.|+   
T Consensus         5 ~~~~~~~K~LSaNDtGaTGgHQaGiyIpk~~~~~lFp~~~~~~-----~~Np~~~~~~~~~s~~~~~~~~r~iYYnn~~~   79 (156)
T PF09217_consen    5 DSWAIYCKRLSANDTGATGGHQAGIYIPKSAAELLFPSINHTK-----EENPDIWLKARWQSHFVTDSQVRFIYYNNRLF   79 (156)
T ss_dssp             SSEEEEEEE--CCCCTTTSSS--EEEE-HHHHHHH-GGG-SSS-----SSS-EEEEEEEETTTT---EEEEEEEE-CCCT
T ss_pred             cceEEEEEEccCCCCCCcCcccceeEecccHHHHhCCCCCccc-----ccCCceeEEEEECCCCccceeEEEEEEccccc
Confidence            345689999999999843    479999999999998866531     134578888888877  679999999987   


Q ss_pred             ---CCceEEccChHHHHhhcC-CCCCCEEEEEE
Q 019261          165 ---SQSYVLTKGWSRYVKEKR-LDAGDVILFER  193 (343)
Q Consensus       165 ---srryvLT~GWs~FVkdK~-LkaGD~VvF~r  193 (343)
                         ...|.||. |.....--+ =.+||.++|.-
T Consensus        80 ~gTRNE~RIT~-~G~~~~~~~~~~tGaL~vlaf  111 (156)
T PF09217_consen   80 GGTRNEYRITR-FGRGFPLQNPENTGALLVLAF  111 (156)
T ss_dssp             TSS--EEEEE----TTSGGG-GGGTT-EEEEEE
T ss_pred             CCCcCceEEee-ecCCCccCCccccccEEEEEE
Confidence               35589964 775444222 25799888873

All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry represents the N-terminal effector-binding domain of the type II restriction endonuclease EcoRII, which has a DNA recognition fold, allowing for binding to 5'-CCWGG sequences. It assumes a structure composed of an eight-stranded beta-sheet with the strands in the order of b2, b5, b4, b3, b7, b6, b1 and b8. They are mostly antiparallel to each other except that b3 is parallel to b7. Alternatively, it may also be viewed as consisting of two mini beta-sheets of four antiparallel beta-strands, sheet I from beta-strands b2, b5, b4, b3 and sheet II from strands b7, b6, b1, b8, folded into an open mixed beta-barrel with a novel topology. Sheet I has a simple Greek key motif while sheet II does not []. The domain represented by this entry is only found in bacterial proteins.; PDB: 3HQF_A 1NA6_A.

>PF06507 Auxin_resp: Auxin response factor; InterPro: IPR010525 This pattern represents a conserved region of auxin-responsive transcription factors

Probab=93.81  E-value=0.015  Score=47.41  Aligned_cols=35  Identities=29%  Similarity=0.352  Sum_probs=29.0

Q ss_pred             ccccccCCCCCCCcccCCCCCCCCCCCCCCCCc-cccccccc
Q 019261          219 AGGAAAGGCGWPRGLYPNHPYPVDVAHGHGVSA-PLYQHAGS  259 (343)
Q Consensus       219 ~~~~~~~~~~f~~v~y~~~~~ps~~~~~~~~~~-~~~~~Ag~  259 (343)
                      |+++++++++| .|+|+||+.+++|     |.+ .+|..|..
T Consensus         1 A~~aa~~~~~F-~V~Y~PRa~~sEF-----VV~~~k~~~al~   36 (83)
T PF06507_consen    1 AAHAAATGSPF-EVFYYPRASPSEF-----VVPASKYDKALN   36 (83)
T ss_pred             ChhHhhcCCeE-EEEECCCCCCcce-----EEEHHHHHHHhc
Confidence            56889999999 7999999999999     555 67777744

The plant hormone auxin (indole-3-acetic acid) can regulate the gene expression of several families, including Aux/IAA, GH3 and SAUR families. Two related families of proteins, Aux/IAA proteins (IPR003311 from INTERPRO) and the auxin response factors (ARF), are key regulators of auxin-modulated gene expression []. There are multiple ARF proteins, some of which activate, while others repress transcription. ARF proteins bind to auxin-responsive cis-acting promoter elements (AuxREs) using an N-terminal DNA-binding domain. It is thought that Aux/IAA proteins activate transcription by modifying ARF activity through the C-terminal protein-protein interaction domains (IPR011525 from INTERPRO) found in both Aux/IAA and ARF proteins. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0009725 response to hormone stimulus, 0005634 nucleus

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	343
1wid_A	130	Solution Structure Of The B3 Dna-Binding Domain Of		2e-33

>pdb|1WID|A Chain A, Solution Structure Of The B3 Dna-Binding Domain Of Rav1 Length = 130

Iteration: 1
 Score =  139 bits (351), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 68/113 (60%), Positives = 78/113 (69%), Gaps = 6/113 (5%)
Query: 96  EPMFEKPLTPSDVGKLNRLVIPKQHAEKYFPXXXXXXXXXXXXXXXXXXXXFEDESGKCW 155
           E +FEK +TPSDVGKLNRLVIPK HAEK+FP                    FED +GK W
Sbjct: 11  EALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLN------FEDVNGKVW 64
Query: 156 RFRYSYWNSSQSYVLTKGWSRYVKEKRLDAGDVILFERHRTDSERLFIGWRRR 208
           RFRYSYWNSSQSYVLTKGWSR+VKEK L AGDV+ F R     ++L+IGW+ R
Sbjct: 65  RFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSR 117

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	343
1wid_A	130	DNA-binding protein RAV1; DNA-binding domain, stru	2e-38
1yel_A	104	AT1G16640; CESG, protein structure initiative, str	8e-10

>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2 Length = 130

 Score =  132 bits (333), Expect = 2e-38
 Identities = 76/128 (59%), Positives = 92/128 (71%), Gaps = 6/128 (4%)

Query: 94  EKEPMFEKPLTPSDVGKLNRLVIPKQHAEKYFPLGGGGADLGSSSSDKGLLLSFEDESGK 153
             E +FEK +TPSDVGKLNRLVIPK HAEK+FPL        S+ S KG+LL+FED +GK
Sbjct: 9   SAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPL------PSSNVSVKGVLLNFEDVNGK 62

Query: 154 CWRFRYSYWNSSQSYVLTKGWSRYVKEKRLDAGDVILFERHRTDSERLFIGWRRRGATAV 213
            WRFRYSYWNSSQSYVLTKGWSR+VKEK L AGDV+ F R     ++L+IGW+ R  + +
Sbjct: 63  VWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSDL 122

Query: 214 AQVAQAGG 221
                + G
Sbjct: 123 DASGPSSG 130

>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2 Length = 104

 Score = 54.4 bits (131), Expect = 8e-10
 Identities = 26/104 (25%), Positives = 34/104 (32%), Gaps = 18/104 (17%)

Query: 95  KEPMFEKPLTPSDVGKLNRLVIPKQHAEKYFPLGGGGADLGSSSSDKGLLLSFEDESGKC 154
            E  F KP       K   L IP    E +        DL              D SG+ 
Sbjct: 7   GEVQFMKPFISEKSSK--SLEIPLGFNEYFPAPFPITVDL-------------LDYSGRS 51

Query: 155 WRFRYSYWNSSQSYVLTKGWSRYVKEKRLDAGDVILFERHRTDS 198
           W  R       +   LT GW  +VK+  L+ G  + F  +  D 
Sbjct: 52  WTVRMKK--RGEKVFLTVGWENFVKDNNLEDGKYLQF-IYDRDR 92

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	343
1wid_A	130	DNA-binding protein RAV1; DNA-binding domain, stru	99.98
4i1k_A	146	B3 domain-containing transcription factor VRN1; B3	99.85
1yel_A	104	AT1G16640; CESG, protein structure initiative, str	99.74
1na6_A	404	Ecorii, restriction endonuclease ecorii; site-spec	94.36

>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2

Probab=99.98  E-value=6.1e-32  Score=229.70  Aligned_cols=115  Identities=64%  Similarity=1.113  Sum_probs=104.4

Q ss_pred             ccCccceEEEecccCCCCCCCcEEeehhhHhhcCCCCCCCCCCCCCCCCCceEEEEEcCCCCeEEEEEEEecCCCceEEc
Q 019261           92 ELEKEPMFEKPLTPSDVGKLNRLVIPKQHAEKYFPLGGGGADLGSSSSDKGLLLSFEDESGKCWRFRYSYWNSSQSYVLT  171 (343)
Q Consensus        92 ~~~k~~lF~K~LT~SDVs~~gRLvIPK~~AE~~fP~l~~s~d~~~~~~~~gi~L~v~D~~Gk~W~FR~sywnssrryvLT  171 (343)
                      ...+.++|+|+||+|||++++||+||+++|++|||.++..+      ..+++.|.++|.+|++|+|+|+||+++++|+|+
T Consensus         7 ~~~~~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~lP~~~~~~------~~~~~~l~l~D~~Gk~W~fr~~~~~~~~~~~Lt   80 (130)
T 1wid_A            7 GRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNV------SVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLT   80 (130)
T ss_dssp             -CCCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCC------SSCCEEEEEEETTTEEEEEEEEEETTTTEEEEE
T ss_pred             CCCCcceEEEEEehHHcCCCCEEEeCHHHHHhhCCcccccc------CCCcEEEEEEeCCCCEEEEEEEEECCCCceEEc
Confidence            45678899999999999999999999999999999987531      245789999999999999999999999999999


Q ss_pred             cChHHHHhhcCCCCCCEEEEEEeeCCCCcEEEEEEEcCCCC
Q 019261          172 KGWSRYVKEKRLDAGDVILFERHRTDSERLFIGWRRRGATA  212 (343)
Q Consensus       172 ~GWs~FVkdK~LkaGD~VvF~r~~~~~g~L~IgIRR~~~~~  212 (343)
                      +||+.||++|+|++||+|+|++.++++.+|+|+|||+.+..
T Consensus        81 ~GW~~FV~~~~L~~GD~~~F~~~~~~~~~l~I~~rr~~~~~  121 (130)
T 1wid_A           81 KGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSD  121 (130)
T ss_dssp             SSHHHHHHHTTCCTTCEEEEEECCSSSCCEEEEEECCCSCS
T ss_pred             CChHHHHHHcCCCCCCEEEEEEecCCCcEEEEEEEECCCCC
Confidence            99999999999999999999999866679999999999764

>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}

Probab=99.85  E-value=6.2e-21  Score=165.42  Aligned_cols=102  Identities=27%  Similarity=0.390  Sum_probs=88.0

Q ss_pred             cCccceEEEecccCCCCCCCcEEeehhhHhhcCCCCCCCCCCCCCCCCCceEEEEEcCCCCeEEEEEEEecCCCceEEcc
Q 019261           93 LEKEPMFEKPLTPSDVGKLNRLVIPKQHAEKYFPLGGGGADLGSSSSDKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTK  172 (343)
Q Consensus        93 ~~k~~lF~K~LT~SDVs~~gRLvIPK~~AE~~fP~l~~s~d~~~~~~~~gi~L~v~D~~Gk~W~FR~sywnssrryvLT~  172 (343)
                      ....|+|+|+||+|||.+.++|.||+++++++||..+.             .+.+.|. |+.|.|+++|+++  ++.|++
T Consensus        43 ~s~~P~Fvk~l~~S~v~~~~~L~IP~~Fa~~~lp~~~~-------------~i~L~~~-gk~W~v~~~~~~~--~~~ls~  106 (146)
T 4i1k_A           43 EPTNPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGISG-------------FIKVQLA-EKQWPVRCLYKAG--RAKFSQ  106 (146)
T ss_dssp             CCSSCEEEEECCGGGSSTTCCEECCHHHHHHHCTTCCS-------------EEEEEET-TEEEEEEEEEETT--EEEECT
T ss_pred             CCCCCEEEEEECchhcCCCcEEEeCHHHHHHhCCCCCe-------------EEEEEEC-CcEEEEEEEEeCC--cEEECC
Confidence            34678999999999999878999999999999998642             3566777 6999999999864  789999


Q ss_pred             ChHHHHhhcCCCCCCEEEEEEeeCCCCcEEEEEEEcCC
Q 019261          173 GWSRYVKEKRLDAGDVILFERHRTDSERLFIGWRRRGA  210 (343)
Q Consensus       173 GWs~FVkdK~LkaGD~VvF~r~~~~~g~L~IgIRR~~~  210 (343)
                      ||..||++|+|++||+|+|...+..+-.|.|.|.|+.+
T Consensus       107 GW~~Fv~dn~L~~GD~cvFeli~~~~~~f~V~IfR~~e  144 (146)
T 4i1k_A          107 GWYEFTLENNLGEGDVCVFELLRTRDFVLKVTAFRVNE  144 (146)
T ss_dssp             THHHHHHHTTCCTTCEEEEEECSSSSCEEEEEEECCC-
T ss_pred             chHHHHHHcCCCCCCEEEEEEecCCceEEEEEEEeccC
Confidence            99999999999999999999997533479999999875

>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2

Probab=99.74  E-value=1.4e-17  Score=135.49  Aligned_cols=96  Identities=24%  Similarity=0.386  Sum_probs=81.5

Q ss_pred             ccceEEEecccCCCCCCCcEEeehhhHhhcCCCCCCCCCCCCCCCCCceEEEEEcCCCCeEEEEEEEecCCCceEEccCh
Q 019261           95 KEPMFEKPLTPSDVGKLNRLVIPKQHAEKYFPLGGGGADLGSSSSDKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGW  174 (343)
Q Consensus        95 k~~lF~K~LT~SDVs~~gRLvIPK~~AE~~fP~l~~s~d~~~~~~~~gi~L~v~D~~Gk~W~FR~sywnssrryvLT~GW  174 (343)
                      ..|.|.|+|+++|.  ..+|.||+++++.+.+.+..             .+.++|..|+.|+++++++.  .+++|++||
T Consensus         7 ~~p~F~K~l~~~~~--~~~L~IP~~F~~~~~~~~~~-------------~v~L~~~~G~~W~v~~~~~~--~~~~l~~GW   69 (104)
T 1yel_A            7 GEVQFMKPFISEKS--SKSLEIPLGFNEYFPAPFPI-------------TVDLLDYSGRSWTVRMKKRG--EKVFLTVGW   69 (104)
T ss_dssp             CCEEEEEECCHHHH--TTCEECCHHHHTTCCCCCCS-------------EEEEEETTSCEEEEEEEEET--TEEEECTTH
T ss_pred             CCCCEEEEECCCCc--cceEECCHHHHHhcCccCCC-------------EEEEECCCCCEEEEEEEEEC--CcEEEccCh
Confidence            56799999999993  45999999999887654422             47788999999999999874  478999999


Q ss_pred             HHHHhhcCCCCCCEEEEEEeeCCCCcEEEEEEEcC
Q 019261          175 SRYVKEKRLDAGDVILFERHRTDSERLFIGWRRRG  209 (343)
Q Consensus       175 s~FVkdK~LkaGD~VvF~r~~~~~g~L~IgIRR~~  209 (343)
                      .+||++|+|++||+|+|....  +.+|.|.|-|..
T Consensus        70 ~~Fv~~~~L~~GD~lvF~~~~--~~~f~V~If~~s  102 (104)
T 1yel_A           70 ENFVKDNNLEDGKYLQFIYDR--DRTFYVIIYGHN  102 (104)
T ss_dssp             HHHHHHHTCCTTCEEEEEECS--SSEEEEEEECSS
T ss_pred             HHHHHHcCCCCCCEEEEEEcC--CCeEEEEEECCC
Confidence            999999999999999999875  467999988754

>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A

Probab=94.36  E-value=0.039  Score=55.01  Aligned_cols=96  Identities=21%  Similarity=0.286  Sum_probs=66.4

Q ss_pred             cCccceEEEecccCCCCC----CCcEEeehhhHhhcCCCCCCCCCCCCCCCCCceEEEE--EcCCCCeEEEEEEEec---
Q 019261           93 LEKEPMFEKPLTPSDVGK----LNRLVIPKQHAEKYFPLGGGGADLGSSSSDKGLLLSF--EDESGKCWRFRYSYWN---  163 (343)
Q Consensus        93 ~~k~~lF~K~LT~SDVs~----~gRLvIPK~~AE~~fP~l~~s~d~~~~~~~~gi~L~v--~D~~Gk~W~FR~sywn---  163 (343)
                      ......|+|.|++.|++.    ..++.||+..+..+||.++...+     .+....+.+  -|...-.+.++++|.+   
T Consensus        15 ~~~~~v~~K~LSAnDtgatgshQ~gi~ipk~~l~~lfp~lg~~~e-----~~~~~~~~~~l~d~d~p~td~~~twYn~R~   89 (404)
T 1na6_A           15 CENYFVYIKRLSANDTGATGGHQVGLYIPSGIVEKLFPSINHTRE-----LNPSVFLTAHVSSHDCPDSEARAIYYNSAH   89 (404)
T ss_dssp             HSSEEEEEEECCHHHHTCC---CCCCCCCHHHHHHHCGGGCCCSS-----SSCEEEEEEEESSSCCCCEEEEEEEECGGG
T ss_pred             cccchheeEEcccccCCCCCCcccccCCchHHHHHhcccCCCccc-----cCCcceeEEEeccCCCceEEEEEEEecccc
Confidence            345679999999999983    34799999889999998874322     122333333  3444455599999986   


Q ss_pred             ---CCCceEEccChH-HHHhhcCCCCCCEEEEEEe
Q 019261          164 ---SSQSYVLTKGWS-RYVKEKRLDAGDVILFERH  194 (343)
Q Consensus       164 ---ssrryvLT~GWs-~FVkdK~LkaGD~VvF~r~  194 (343)
                         ....|.||. |. .+.--+...+||.++|-+.
T Consensus        90 ~~~tRnEyRLt~-~~~~~~~~~~a~~GDLlvia~~  123 (404)
T 1na6_A           90 FGKTRNEKRITR-WGRGSPLQDPENTGALTLLAFK  123 (404)
T ss_dssp             TTSCCCEEEEEC-CCTTSGGGCGGGTTCEEEEEEE
T ss_pred             cCCCCCceEEee-cCCCCcccccCCCCCEEEEEEe
Confidence               224589975 44 3444467789999999876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	343
d1wida_	117	b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cre	2e-40
d1na6a1	175	b.142.1.1 (A:4-178) Restriction endonuclease EcoRI	1e-28
d1yela1	102	b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabid	5e-21

>d1wida_ b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 117

class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: B3 DNA binding domain
domain: DNA-binding protein RAV1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  136 bits (343), Expect = 2e-40
 Identities = 75/120 (62%), Positives = 90/120 (75%), Gaps = 6/120 (5%)

Query: 94  EKEPMFEKPLTPSDVGKLNRLVIPKQHAEKYFPLGGGGADLGSSSSDKGLLLSFEDESGK 153
             E +FEK +TPSDVGKLNRLVIPK HAEK+FPL        S+ S KG+LL+FED +GK
Sbjct: 2   SAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPL------PSSNVSVKGVLLNFEDVNGK 55

Query: 154 CWRFRYSYWNSSQSYVLTKGWSRYVKEKRLDAGDVILFERHRTDSERLFIGWRRRGATAV 213
            WRFRYSYWNSSQSYVLTKGWSR+VKEK L AGDV+ F R     ++L+IGW+ R  + +
Sbjct: 56  VWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSDL 115

>d1na6a1 b.142.1.1 (A:4-178) Restriction endonuclease EcoRII, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 175

class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: Type II restriction endonuclease effector domain
domain: Restriction endonuclease EcoRII, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score =  106 bits (267), Expect = 1e-28
 Identities = 22/120 (18%), Positives = 35/120 (29%), Gaps = 13/120 (10%)

Query: 86  NSNQEQELEKEPMFEKPLTPSDVGKLNR----LVIPKQHAEKYFPLGGGGADLGSSSSDK 141
           N   E   E   ++ K L+ +D G        L IP    EK FP      +    +   
Sbjct: 5   NWLLEIACENYFVYIKRLSANDTGATGGHQVGLYIPSGIVEKLFPSINHTRE---LNPSV 61

Query: 142 GLLLSFEDESGKCWRFRYSYWNSS------QSYVLTKGWSRYVKEKRLDAGDVILFERHR 195
            L              R  Y+NS+          +T+       +   + G + L     
Sbjct: 62  FLTAHVSSHDCPDSEARAIYYNSAHFGKTRNEKRITRWGRGSPLQDPENTGALTLLAFKL 121

>d1yela1 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 102

class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: B3 DNA binding domain
domain: At1g16640
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 84.2 bits (208), Expect = 5e-21
 Identities = 26/101 (25%), Positives = 33/101 (32%), Gaps = 17/101 (16%)

Query: 95  KEPMFEKPLTPSDVGKLNRLVIPKQHAEKYFPLGGGGADLGSSSSDKGLLLSFEDESGKC 154
            E  F KP       K   L IP    E +        DL              D SG+ 
Sbjct: 5   GEVQFMKPFISEKSSK--SLEIPLGFNEYFPAPFPITVDL-------------LDYSGRS 49

Query: 155 WRFRYSYWNSSQSYVLTKGWSRYVKEKRLDAGDVILFERHR 195
           W  R       +   LT GW  +VK+  L+ G  + F   R
Sbjct: 50  WTVRM--KKRGEKVFLTVGWENFVKDNNLEDGKYLQFIYDR 88

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	343
d1wida_	117	DNA-binding protein RAV1 {Thale cress (Arabidopsis	99.97
d1na6a1	175	Restriction endonuclease EcoRII, N-terminal domain	99.8
d1yela1	102	At1g16640 {Thale cress (Arabidopsis thaliana) [Tax	99.66

>d1wida_ b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: B3 DNA binding domain
domain: DNA-binding protein RAV1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.97  E-value=5.1e-30  Score=210.28  Aligned_cols=111  Identities=67%  Similarity=1.162  Sum_probs=102.4

Q ss_pred             ccceEEEecccCCCCCCCcEEeehhhHhhcCCCCCCCCCCCCCCCCCceEEEEEcCCCCeEEEEEEEecCCCceEEccCh
Q 019261           95 KEPMFEKPLTPSDVGKLNRLVIPKQHAEKYFPLGGGGADLGSSSSDKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGW  174 (343)
Q Consensus        95 k~~lF~K~LT~SDVs~~gRLvIPK~~AE~~fP~l~~s~d~~~~~~~~gi~L~v~D~~Gk~W~FR~sywnssrryvLT~GW  174 (343)
                      ..+||+|+||+|||++++||+||++++++|||+++...      +.+++.|.++|.+|++|.|+|++|+++++|+|++||
T Consensus         3 ~~~iF~K~Lt~sDv~~~~rL~iP~~~~~~~lp~~~~~~------~~~~~~~~~~d~~g~~W~~~~~~~~~~~~~~l~~GW   76 (117)
T d1wida_           3 AEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNV------SVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGW   76 (117)
T ss_dssp             CEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCC------SSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSH
T ss_pred             CceEEEEEecchhcCCCCEEEECHHHHHHhCCcccccc------CCCcEEEEEEeCCCCEEEEEEEEECCCCceEEecCH
Confidence            46899999999999998999999999999999987642      356899999999999999999999989999999999


Q ss_pred             HHHHhhcCCCCCCEEEEEEeeCCCCcEEEEEEEcCCC
Q 019261          175 SRYVKEKRLDAGDVILFERHRTDSERLFIGWRRRGAT  211 (343)
Q Consensus       175 s~FVkdK~LkaGD~VvF~r~~~~~g~L~IgIRR~~~~  211 (343)
                      ..||++|+|++||+|+|++...++++|+|++||+...
T Consensus        77 ~~Fv~~~~Lk~GD~~~F~~~~~~~~~~~i~~r~~~~~  113 (117)
T d1wida_          77 SRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGS  113 (117)
T ss_dssp             HHHHHHTTCCTTCEEEEEECCSSSCCEEEEEECCCSC
T ss_pred             HHHHHHcCCCCCCEEEEEEEeCCCCEEEEEEEECCCC
Confidence            9999999999999999999987778999999998865

>d1na6a1 b.142.1.1 (A:4-178) Restriction endonuclease EcoRII, N-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: Type II restriction endonuclease effector domain
domain: Restriction endonuclease EcoRII, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=1.8e-20  Score=165.07  Aligned_cols=118  Identities=18%  Similarity=0.126  Sum_probs=95.1

Q ss_pred             ccCccceEEEecccCCCCCCCc----EEeehhhHhhcCCCCCCCCCCCCCCCCCceEEEEEcCCCCeEEEEEEEecCC--
Q 019261           92 ELEKEPMFEKPLTPSDVGKLNR----LVIPKQHAEKYFPLGGGGADLGSSSSDKGLLLSFEDESGKCWRFRYSYWNSS--  165 (343)
Q Consensus        92 ~~~k~~lF~K~LT~SDVs~~gR----LvIPK~~AE~~fP~l~~s~d~~~~~~~~gi~L~v~D~~Gk~W~FR~sywnss--  165 (343)
                      ..+...+|+|+||+|||+++|+    |+|||++|+++||+++..++   .++.+++.+.+.|.+|+.|+|||+|||+.  
T Consensus        11 ~~~~~~~F~K~LtasD~g~tg~HQaG~~IPK~~ae~~FP~l~~~~e---~nP~~~l~~~i~d~~g~~w~fR~iYyn~~~~   87 (175)
T d1na6a1          11 ACENYFVYIKRLSANDTGATGGHQVGLYIPSGIVEKLFPSINHTRE---LNPSVFLTAHVSSHDCPDSEARAIYYNSAHF   87 (175)
T ss_dssp             HHSSEEEEEEECCHHHHTCC---CCCCCCCHHHHHHHCGGGCCCSS---SSCEEEEEEEESSSCCCCEEEEEEEECGGGT
T ss_pred             CCCceEEEEEEcccccccccCCccceeeecHHHHHHhCCCCCcccc---cCCCceEEEEEecCCCCeeEEEEEEECCccC
Confidence            3457889999999999999886    99999999999999987532   12333445556699999999999999874  


Q ss_pred             ----CceEEccChHHHHhhcCCCCCCEEEEEEeeC--CCCcEEEEEEEcCCCC
Q 019261          166 ----QSYVLTKGWSRYVKEKRLDAGDVILFERHRT--DSERLFIGWRRRGATA  212 (343)
Q Consensus       166 ----rryvLT~GWs~FVkdK~LkaGD~VvF~r~~~--~~g~L~IgIRR~~~~~  212 (343)
                          ..|+||++|+.|+..+.+.+||.++|.+...  ..+..+|.|-.-....
T Consensus        88 ggTRneyRiT~~g~~~~~~~~~n~G~l~i~af~~~~~~~~~~~~~vwvc~~~~  140 (175)
T d1na6a1          88 GKTRNEKRITRWGRGSPLQDPENTGALTLLAFKLDEQGGDCKEVNIWVCASTD  140 (175)
T ss_dssp             TSCCCEEEEECCCTTSGGGCGGGTTCEEEEEEECCTTSCCCCEEEEEECCSHH
T ss_pred             CCccccEEEEeccccccccCccccccEEEEEeecCCCCCceeEEEEEEecCcc
Confidence                7799999999999999999999999998633  3446778877766653

>d1yela1 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: B3 DNA binding domain
domain: At1g16640
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.66  E-value=2.9e-16  Score=126.24  Aligned_cols=96  Identities=25%  Similarity=0.401  Sum_probs=80.1

Q ss_pred             CccceEEEecccCCCCCCCcEEeehhhHhhcCCCCCCCCCCCCCCCCCceEEEEEcCCCCeEEEEEEEecCCCceEEccC
Q 019261           94 EKEPMFEKPLTPSDVGKLNRLVIPKQHAEKYFPLGGGGADLGSSSSDKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKG  173 (343)
Q Consensus        94 ~k~~lF~K~LT~SDVs~~gRLvIPK~~AE~~fP~l~~s~d~~~~~~~~gi~L~v~D~~Gk~W~FR~sywnssrryvLT~G  173 (343)
                      .+.+-|.|+|.++++..  +|.||+.++..+.+....             .+.++|..|+.|.+++..+  +....|++|
T Consensus         4 ~~~~~Ffkv~~~~~~~~--~L~IP~~F~~~~~~~~~~-------------~i~L~d~~G~~W~v~~~~~--~~~~~~~~G   66 (102)
T d1yela1           4 TGEVQFMKPFISEKSSK--SLEIPLGFNEYFPAPFPI-------------TVDLLDYSGRSWTVRMKKR--GEKVFLTVG   66 (102)
T ss_dssp             CCCEEEEEECCHHHHTT--CEECCHHHHTTCCCCCCS-------------EEEEEETTSCEEEEEEEEE--TTEEEECTT
T ss_pred             CCCCeEEEEEcCcccCC--CEECCHHHHHhCCCCCCC-------------EEEEEcCCCCEEEEEEEEe--CCeEEEccC
Confidence            35567999999998765  899999999988665532             4678899999999998765  456788999


Q ss_pred             hHHHHhhcCCCCCCEEEEEEeeCCCCcEEEEEEEc
Q 019261          174 WSRYVKEKRLDAGDVILFERHRTDSERLFIGWRRR  208 (343)
Q Consensus       174 Ws~FVkdK~LkaGD~VvF~r~~~~~g~L~IgIRR~  208 (343)
                      |.+||++|+|++||+|+|....  +..|.|.|-+.
T Consensus        67 W~~Fv~~n~L~~GD~~vF~~~~--~~~f~V~If~~   99 (102)
T d1yela1          67 WENFVKDNNLEDGKYLQFIYDR--DRTFYVIIYGH   99 (102)
T ss_dssp             HHHHHHHHTCCTTCEEEEEECS--SSEEEEEEECS
T ss_pred             HHHHHHHcCCCcCCEEEEEEcC--CcEEEEEEeCC
Confidence            9999999999999999999884  56788888754