Citrus Sinensis ID: 019265

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340---

MALSLLPVSSPTFPLHHPPSSLYHHHPHRTKLQALVFRKFSLGKERVRGGFMGKKGGGFLWVSPSSSSSSLSVCWASNGGGGDLGRDNYEEDDEAGDESEADDDGDEYDEEISGSASVLPERWDVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDGTTGTVIVLTTPDAQRAMLAYQGTSSTINYDPCLVNLISKTNIFIVEGYLFELPDTIRTITKACEVAHRSGALVAVTASDVTCIERHYDDFWYEYYMVLIVVLEFN

cccccccccccccccccccccccccccccccccHHHHHcccccEEEEEccccccccccEEEEEccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccEEEEEEEccHHHHHHcccccccEEEccHHHHHHHHHHHcccccEEEcccHHHHHHHHHHHHccccccccccEEEEEEEEcccHHHHHHHHHHHHcccccccccccccccEEEEEEEcccccEEEEcccccccccccccccHHHHccccEEEEEEEEcccccHHHHHHHHHHHHHHcccEEEEEcccHHHHHHcHHHHHHHHHHccEEEEEEc

ccccccccccccccccccccHHHHcccccccHHHHHHHHcccccHHHcccccccccccEEEEEccccccEEEEEEEcccccccccccccHHHHHcccccccccccccccccccccccccccccEEEEEcccEEEEEEEccHHHHHHcccccccEEEccHHHHHHHHHHHccccEEEccccHHHHHHHHHHHHHcccccccccEEEEEEEcccccHHHHHHHHHHHcccccccccccccccEEEEEEEcccHHHHHHHHHHHHHHcccccccHHHHHHccEEEEEEEccccccHHHHHHHHHHHHHHcccEEEEEcccHHHHHcccHHHHHHHHHcccEEEEEc

malsllpvssptfplhhppsslyhhhphrtkLQALVFRKFSLgkervrggfmgkkgggflwvspsssssslsvcwasnggggdlgrdnyeeddeagdeseadddgdeydeeisgsasvlperwdvLGLGQAmvdfsgmvdddFLERlglekgtrKLVNHEERGRVLRamdgcsykaaaggslSNSLVALARlggkpiggpalnvamtgsvgsdplggfyrAKLRRANvafcsepikdgttgTVIVLTTPDAQRAMLAYqgtsstinydpclvnlisktnifivegylfelpdtIRTITKACEVAHRSGALVAVTASDVTCIERHYDDFWYEYYMVLIVVLEFN

malsllpvsspTFPLHHPPSSLYHHHPHRTKLQALVFRKFSLGKERVRGGFMGKKGGGFLWVSPSSSSSSLSVCWASNGGGGDLGRDNYEEDDEAGDeseadddgdeyDEEISgsasvlpeRWDVLGLGQAMVDFSGMVDDDFLERLglekgtrklvnheergrVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANVAfcsepikdgttgTVIVLTTPDAQRAMLAYQGTSSTINYDPCLVNLISKTNIFIVEGYLFELPDTIRTITKACEVAHRSGalvavtasdvtCIERHYDDFWYEYYMVLIVVLEFN

MALSLLPVSSPTFplhhppsslyhhhphRTKLQALVFRKFSLGKERVRggfmgkkgggfLWVspsssssslsVCWASNGGGGDLGRDNyeeddeagdeseadddgdeydeeISGSASVLPERWDVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDGTTGTVIVLTTPDAQRAMLAYQGTSSTINYDPCLVNLISKTNIFIVEGYLFELPDTIRTITKACEVAHRSGALVAVTASDVTCIERHYDDFWYEYYMVLIVVLEFN

*************************HPHRTKLQALVFRKFSLGKERVRGGFMGKKGGGFLWV**********VCW******************************************VLPERWDVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDGTTGTVIVLTTPDAQRAMLAYQGTSSTINYDPCLVNLISKTNIFIVEGYLFELPDTIRTITKACEVAHRSGALVAVTASDVTCIERHYDDFWYEYYMVLIVVLE**

***SLLPVSSPTFPLHHPPSSLYHHHPHRTKLQALVFRKFSLGKERVRGGFMGKKGGGFLWVSPSSSSSSLSV*************************************************WDVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDGTTGTVIVLTTPDAQRAMLAYQGTSSTINYDPCLVNLISKTNIFIVEGYLFELPDTIRTITKACEVAHRSGALVAVTASDVTCIERHYDDFWYEYYMVLIVVLEFN

MALSLLPVSSPTFPLHHPPSSLYHHHPHRTKLQALVFRKFSLGKERVRGGFMGKKGGGFLWVS*********VCWASNGGGGDLGRDNY*************************SASVLPERWDVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDGTTGTVIVLTTPDAQRAMLAYQGTSSTINYDPCLVNLISKTNIFIVEGYLFELPDTIRTITKACEVAHRSGALVAVTASDVTCIERHYDDFWYEYYMVLIVVLEFN

*****LPVSSPTFPLHHPPSSLYHHHPHRTKLQALVFRKFSLGKERVRGGFMGKKGGGFLWVSPSSSSSSLSVCWASN****************************************LPERWDVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDGTTGTVIVLTTPDAQRAMLAYQGTSSTINYDPCLVNLISKTNIFIVEGYLFELPDTIRTITKACEVAHRSGALVAVTASDVTCIERHYDDFWYEYYMVLIVVLEFN

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		343	2.2.26 [Sep-21-2011]
Q55480		333	Uncharacterized sugar kin	N/A	no	0.548	0.564	0.297	2e-16
P55262		361	Adenosine kinase OS=Crice	yes	no	0.495	0.470	0.209	0.0006

>sp\|Q55480\|YZ37_SYNY3 Uncharacterized sugar kinase slr0537 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr0537 PE=3 SV=1	Back alignment and function desciption

 Score = 86.7 bits (213), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/198 (29%), Positives = 92/198 (46%), Gaps = 10/198 (5%)

Query: 122 RWDVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGS 181
           ++DV G+G A+VD    V  + L  LG++KG   LV       ++  +     K ++GGS
Sbjct: 4   KYDVYGMGNALVDMEFEVTPEQLASLGIDKGVMTLVEEARENELIAQLAQQRGKQSSGGS 63

Query: 182 LSNSLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANVAFC--SEPIKDGT 239
            +N+LV+LA+LGG               VG D  G FY   L    +      E   +G 
Sbjct: 64  AANTLVSLAQLGGTGF--------YACKVGKDEAGAFYLQDLNDCGLDTNPHHETAGEGI 115

Query: 240 TGTVIVLTTPDAQRAMLAYQGTSSTINYDPCLVNLISKTNIFIVEGYLFELPDTIRTITK 299
           TG  +V  TPDA R M A+ G S +++      + + ++    +EGYL   P       +
Sbjct: 116 TGKCLVFVTPDADRTMNAFLGISGSLSVTEMDWSALKQSQYLYLEGYLVTSPSAKAACIE 175

Query: 300 ACEVAHRSGALVAVTASD 317
           A  +A +SG    ++ SD
Sbjct: 176 AKAIAEQSGVKTCLSLSD 193

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)
EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: -

>sp\|P55262\|ADK_CRIGR Adenosine kinase OS=Cricetulus griseus GN=ADK PE=1 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		343
224126219		465	predicted protein [Populus trichocarpa]	0.827	0.610	0.642	1e-106
147866320		414	hypothetical protein VITISV_012090 [Viti	0.623	0.516	0.864	1e-106
225454708		461	PREDICTED: uncharacterized sugar kinase	0.623	0.464	0.859	1e-105
297737278		366	unnamed protein product [Vitis vinifera]	0.623	0.584	0.859	1e-105
255558089		483	Ribokinase, putative [Ricinus communis]	0.746	0.530	0.728	1e-104
449461231		471	PREDICTED: uncharacterized sugar kinase	0.667	0.486	0.793	1e-103
18417026		471	pfkB-like carbohydrate kinase family pro	0.819	0.596	0.674	1e-102
297799218		468	pfkB-type carbohydrate kinase family pro	0.723	0.529	0.726	1e-102
4469011		406	carbohydrate kinase-like protein [Arabid	0.743	0.628	0.727	1e-102
21595460		471	carbohydrate kinase-like protein [Arabid	0.819	0.596	0.667	1e-101

>gi\|224126219\|ref\|XP_002319785.1\| predicted protein [Populus trichocarpa] gi\|222858161\|gb\|EEE95708.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 210/327 (64%), Positives = 238/327 (72%), Gaps = 43/327 (13%)

Query: 9   SSPTFPLHHPPSSLYHHHPHRTKLQA----LVFRKFSLGKERVRGGFMGKKGGGFLWVSP 64
           SSP F L+  P SL+ H+   T L +    +   K     +  RG F             
Sbjct: 26  SSPIFSLYRNPLSLHAHNTTPTNLSSPYGPIQTSKLDTVAKTSRGSFR------------ 73

Query: 65  SSSSSSLSVCWASNGGGGDLGRDNYEEDDEAGDESEADDDGDEYDEEISGSA--SVLPER 122
               SSLS               N E +   G +       D+ +EEI G +  SVLP+R
Sbjct: 74  ---ISSLS---------------NIERELGTGSQ-------DDEEEEIEGVSPTSVLPDR 108

Query: 123 WDVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSL 182
           WDVLGLGQAMVDFSG VDD+FL+RLGLEKGTRK+VNHEERGRVLRAMDGCSYKAAAGGSL
Sbjct: 109 WDVLGLGQAMVDFSGTVDDEFLKRLGLEKGTRKVVNHEERGRVLRAMDGCSYKAAAGGSL 168

Query: 183 SNSLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDGTTGT 242
           SNSLVALARLG K +GGPALNVAM GSVGSDPLGGFYR+KL+RANV F SEP+KDGTTGT
Sbjct: 169 SNSLVALARLGCKSVGGPALNVAMAGSVGSDPLGGFYRSKLQRANVNFLSEPVKDGTTGT 228

Query: 243 VIVLTTPDAQRAMLAYQGTSSTINYDPCLVNLISKTNIFIVEGYLFELPDTIRTITKACE 302
           VIVLTTPDAQR MLA+QGTSST+NYDPCL ++ISKT I +VEGYLFEL DTI+TI+KACE
Sbjct: 229 VIVLTTPDAQRTMLAHQGTSSTVNYDPCLASIISKTKILVVEGYLFELHDTIKTISKACE 288

Query: 303 VAHRSGALVAVTASDVTCIERHYDDFW 329
            A RSGALVA+TASDV+CIERHYDDFW
Sbjct: 289 EARRSGALVAITASDVSCIERHYDDFW 315

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|147866320\|emb\|CAN82032.1\| hypothetical protein VITISV_012090 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|225454708\|ref\|XP_002271653.1\| PREDICTED: uncharacterized sugar kinase slr0537-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|297737278\|emb\|CBI26479.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255558089\|ref\|XP_002520073.1\| Ribokinase, putative [Ricinus communis] gi\|223540837\|gb\|EEF42397.1\| Ribokinase, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|449461231\|ref\|XP_004148345.1\| PREDICTED: uncharacterized sugar kinase slr0537-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|18417026\|ref\|NP_567780.1\| pfkB-like carbohydrate kinase family protein [Arabidopsis thaliana] gi\|15450507\|gb\|AAK96546.1\| AT4g27600/T29A15_90 [Arabidopsis thaliana] gi\|16974333\|gb\|AAL31151.1\| AT4g27600/T29A15_90 [Arabidopsis thaliana] gi\|332659964\|gb\|AEE85364.1\| pfkB-like carbohydrate kinase family protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|297799218\|ref\|XP_002867493.1\| pfkB-type carbohydrate kinase family protein [Arabidopsis lyrata subsp. lyrata] gi\|297313329\|gb\|EFH43752.1\| pfkB-type carbohydrate kinase family protein [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|4469011\|emb\|CAB38272.1\| carbohydrate kinase-like protein [Arabidopsis thaliana] gi\|7269614\|emb\|CAB81410.1\| carbohydrate kinase-like protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|21595460\|gb\|AAM66103.1\| carbohydrate kinase-like protein [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		343
TAIR\|locus:2137782		471	NARA5 "GENES NECESSARY FOR THE	0.950	0.692	0.581	9e-93
TIGR_CMR\|SPO_3582		328	SPO_3582 "kinase, pfkB family"	0.571	0.597	0.299	2.1e-22
ZFIN\|ZDB-GENE-030131-948		345	adkb "adenosine kinase b" [Dan	0.492	0.489	0.258	1e-06
UNIPROTKB\|Q9KLE5		434	VC_A0801 "Inosine-guanosine ki	0.612	0.483	0.245	6.4e-05
TIGR_CMR\|VC_A0801		434	VC_A0801 "inosine-guanosine ki	0.612	0.483	0.245	6.4e-05
UNIPROTKB\|Q5ZMK9		359	ADK "Uncharacterized protein"	0.495	0.473	0.239	0.00022
UNIPROTKB\|Q9KSX7		434	VC_1129 "Inosine-guanosine kin	0.623	0.493	0.226	0.0003
TIGR_CMR\|VC_1129		434	VC_1129 "inosine-guanosine kin	0.623	0.493	0.226	0.0003
UNIPROTKB\|P0A9J6		309	rbsK "ribokinase" [Escherichia	0.384	0.427	0.236	0.00062
UNIPROTKB\|F1PJV5		362	ADK "Uncharacterized protein"	0.481	0.455	0.215	0.00083

TAIR\|locus:2137782 NARA5 "GENES NECESSARY FOR THE ACHIEVEMENT OF RUBISCO ACCUMULATION 5" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 924 (330.3 bits), Expect = 9.0e-93, P = 9.0e-93
 Identities = 192/330 (58%), Positives = 219/330 (66%)

Query:     1 MALSLL-PVSSPTFXXXXXXXXXXXXXXXRTKLQALVFRKFSLGKERVRXXXXXXXXXXX 59
             MA SLL P+ +                   + L  L       G  R R           
Sbjct:     1 MAFSLLSPIPTSASLFFTLSAITASNNASSSSLSRLYSLYHPKGTLRTRTATSFFGASGN 60

Query:    60 LWVXXXXXXXXXXVCWASNGGGGDLGRDNXXXXXXXXXXXXXXXXXXXXXXXISGSASVL 119
             L +          VC    G G +L  D+                        + S++  
Sbjct:    61 LRIVSMAENRQL-VCRIGGGAGAEL--DDMDEGEIQRIGNEDEDDDEFIQVHANNSSAAS 117

Query:   120 PERWDVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAG 179
             PERWDVLGLGQAMVDFSG+VDD+FL++LGLEKGTRKL+NHEERG++L+AMDGCSYKAAAG
Sbjct:   118 PERWDVLGLGQAMVDFSGVVDDEFLKKLGLEKGTRKLINHEERGKLLQAMDGCSYKAAAG 177

Query:   180 GSLSNSLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDGT 239
             GSLSN+LVALARLG + I    LNVAM GS+G DPLG FY  KLRRANV F S PIKDGT
Sbjct:   178 GSLSNTLVALARLGSQSICDRPLNVAMAGSIGGDPLGSFYGTKLRRANVNFLSAPIKDGT 237

Query:   240 TGTVIVLTTPDAQRAMLAYQGTSSTINYDPCLVNLISKTNIFIVEGYLFELPDTIRTITK 299
             TGTVIVLTTPDAQR MLAYQGTSS +NYD CL +LI+KTN+F+VEGYLFELPDTIRTITK
Sbjct:   238 TGTVIVLTTPDAQRTMLAYQGTSSVVNYDSCLASLIAKTNVFVVEGYLFELPDTIRTITK 297

Query:   300 ACEVAHRSGALVAVTASDVTCIERHYDDFW 329
             ACE AHR+GALVAVTASDV+CIERHYDDFW
Sbjct:   298 ACEEAHRNGALVAVTASDVSCIERHYDDFW 327

GO:0005739 "mitochondrion" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0015979 "photosynthesis" evidence=IMP

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

TIGR_CMR\|SPO_3582 SPO_3582 "kinase, pfkB family" [Ruegeria pomeroyi DSS-3 (taxid:246200)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-030131-948 adkb "adenosine kinase b" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9KLE5 VC_A0801 "Inosine-guanosine kinase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]	Back alignment and assigned GO terms

TIGR_CMR\|VC_A0801 VC_A0801 "inosine-guanosine kinase" [Vibrio cholerae O1 biovar El Tor (taxid:686)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5ZMK9 ADK "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9KSX7 VC_1129 "Inosine-guanosine kinase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]	Back alignment and assigned GO terms

TIGR_CMR\|VC_1129 VC_1129 "inosine-guanosine kinase" [Vibrio cholerae O1 biovar El Tor (taxid:686)]	Back alignment and assigned GO terms

UNIPROTKB\|P0A9J6 rbsK "ribokinase" [Escherichia coli K-12 (taxid:83333)]	Back alignment and assigned GO terms

UNIPROTKB\|F1PJV5 ADK "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		343
PLN02813		426	PLN02813, PLN02813, pfkB-type carbohydrate kinase	1e-144
cd01168		312	cd01168, adenosine_kinase, Adenosine kinase (AK) c	2e-58
COG0524		311	COG0524, RbsK, Sugar kinases, ribokinase family [C	1e-15
pfam00294		298	pfam00294, PfkB, pfkB family carbohydrate kinase	1e-12
cd01166		294	cd01166, KdgK, 2-keto-3-deoxygluconate kinase (Kdg	7e-10
cd01174		292	cd01174, ribokinase, Ribokinase catalyses the phos	7e-09
TIGR02152		293	TIGR02152, D_ribokin_bact, ribokinase	5e-08
cd01167		295	cd01167, bac_FRK, Fructokinases (FRKs) mainly from	2e-06
cd01942		279	cd01942, ribokinase_group_A, Ribokinase-like subgr	7e-06
PTZ00247		345	PTZ00247, PTZ00247, adenosine kinase; Provisional	9e-06
PLN02379		367	PLN02379, PLN02379, pfkB-type carbohydrate kinase	3e-04
cd01944		289	cd01944, YegV_kinase_like, YegV-like sugar kinase	5e-04
PRK09434		304	PRK09434, PRK09434, aminoimidazole riboside kinase	0.001
PRK15074		434	PRK15074, PRK15074, inosine/guanosine kinase; Prov	0.004

>gnl\|CDD\|215434 PLN02813, PLN02813, pfkB-type carbohydrate kinase family protein	Back alignment and domain information

 Score =  414 bits (1067), Expect = e-144
 Identities = 170/227 (74%), Positives = 194/227 (85%)

Query: 103 DDGDEYDEEISGSASVLPERWDVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEER 162
            D ++ +         +PERWDVLGLGQAMVDFSGMVDD+FLERLGLEKGTRK++NHEER
Sbjct: 50  QDEEQPEGFGPIPEKAVPERWDVLGLGQAMVDFSGMVDDEFLERLGLEKGTRKVINHEER 109

Query: 163 GRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAK 222
           G+VLRA+DGCSYKA+AGGSLSN+LVALARLG +   GPALNVAM GSVGSDPLG FYR K
Sbjct: 110 GKVLRALDGCSYKASAGGSLSNTLVALARLGSQSAAGPALNVAMAGSVGSDPLGDFYRTK 169

Query: 223 LRRANVAFCSEPIKDGTTGTVIVLTTPDAQRAMLAYQGTSSTINYDPCLVNLISKTNIFI 282
           LRRANV F S+P+KDGTTGTVIVLTTPDAQR ML+YQGTSST+NYD CL + ISK+ + +
Sbjct: 170 LRRANVHFLSQPVKDGTTGTVIVLTTPDAQRTMLSYQGTSSTVNYDSCLASAISKSRVLV 229

Query: 283 VEGYLFELPDTIRTITKACEVAHRSGALVAVTASDVTCIERHYDDFW 329
           VEGYL+ELP TI  I +ACE AHR+GALVAVTASDV+CIERH DDFW
Sbjct: 230 VEGYLWELPQTIEAIAQACEEAHRAGALVAVTASDVSCIERHRDDFW 276

Length = 426

>gnl\|CDD\|238573 cd01168, adenosine_kinase, Adenosine kinase (AK) catalyzes the phosphorylation of ribofuranosyl-containing nucleoside analogues at the 5'-hydroxyl using ATP or GTP as the phosphate donor	Back alignment and domain information

>gnl\|CDD\|223598 COG0524, RbsK, Sugar kinases, ribokinase family [Carbohydrate transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|215842 pfam00294, PfkB, pfkB family carbohydrate kinase	Back alignment and domain information

>gnl\|CDD\|238571 cd01166, KdgK, 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP)	Back alignment and domain information

>gnl\|CDD\|238579 cd01174, ribokinase, Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP	Back alignment and domain information

>gnl\|CDD\|233751 TIGR02152, D_ribokin_bact, ribokinase	Back alignment and domain information

>gnl\|CDD\|238572 cd01167, bac_FRK, Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate	Back alignment and domain information

>gnl\|CDD\|238917 cd01942, ribokinase_group_A, Ribokinase-like subgroup A	Back alignment and domain information

>gnl\|CDD\|240328 PTZ00247, PTZ00247, adenosine kinase; Provisional	Back alignment and domain information

>gnl\|CDD\|178005 PLN02379, PLN02379, pfkB-type carbohydrate kinase family protein	Back alignment and domain information

>gnl\|CDD\|238919 cd01944, YegV_kinase_like, YegV-like sugar kinase	Back alignment and domain information

>gnl\|CDD\|236514 PRK09434, PRK09434, aminoimidazole riboside kinase; Provisional	Back alignment and domain information

>gnl\|CDD\|185033 PRK15074, PRK15074, inosine/guanosine kinase; Provisional	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		343
PLN02813		426	pfkB-type carbohydrate kinase family protein	100.0
PRK15074		434	inosine/guanosine kinase; Provisional	99.98
PLN02379		367	pfkB-type carbohydrate kinase family protein	99.97
PTZ00247		345	adenosine kinase; Provisional	99.95
KOG2854		343	consensus Possible pfkB family carbohydrate kinase	99.95
cd01168		312	adenosine_kinase Adenosine kinase (AK) catalyzes t	99.95
PLN02967		581	kinase	99.93
PLN02543		496	pfkB-type carbohydrate kinase family protein	99.92
PLN02548		332	adenosine kinase	99.92
cd01944		289	YegV_kinase_like YegV-like sugar kinase. Found onl	99.91
PRK11142		306	ribokinase; Provisional	99.91
cd01174		292	ribokinase Ribokinase catalyses the phosphorylatio	99.9
PLN02323		330	probable fructokinase	99.9
PTZ00292		326	ribokinase; Provisional	99.9
cd01942		279	ribokinase_group_A Ribokinase-like subgroup A. Fou	99.9
COG0524		311	RbsK Sugar kinases, ribokinase family [Carbohydrat	99.9
cd01166		294	KdgK 2-keto-3-deoxygluconate kinase (KdgK) phospho	99.89
cd01939		290	Ketohexokinase Ketohexokinase (fructokinase, KHK)	99.89
cd01167		295	bac_FRK Fructokinases (FRKs) mainly from bacteria	99.88
PLN02341		470	pfkB-type carbohydrate kinase family protein	99.88
cd01945		284	ribokinase_group_B Ribokinase-like subgroup B. Fou	99.87
PRK09434		304	aminoimidazole riboside kinase; Provisional	99.86
cd01940		264	Fructoselysine_kinase_like Fructoselysine kinase-l	99.86
cd01947		265	Guanosine_kinase_like Guanosine kinase-like sugar	99.85
TIGR02152		293	D_ribokin_bact ribokinase. This model describes ri	99.84
PF00294		301	PfkB: pfkB family carbohydrate kinase; InterPro: I	99.84
PRK09813		260	fructoselysine 6-kinase; Provisional	99.84
PRK09850		313	pseudouridine kinase; Provisional	99.84
cd01941		288	YeiC_kinase_like YeiC-like sugar kinase. Found in	99.83
cd01943		328	MAK32 MAK32 kinase. MAK32 is a protein found prima	99.83
cd01172		304	RfaE_like RfaE encodes a bifunctional ADP-heptose	99.81
KOG2855		330	consensus Ribokinase [Carbohydrate transport and m	99.81
PRK09954		362	putative kinase; Provisional	99.8
TIGR03828		304	pfkB 1-phosphofructokinase. This enzyme acts in co	99.79
TIGR02198		315	rfaE_dom_I rfaE bifunctional protein, domain I. Rf	99.77
PRK13508		309	tagatose-6-phosphate kinase; Provisional	99.77
TIGR01231		309	lacC tagatose-6-phosphate kinase. This enzyme is p	99.76
PRK11316		473	bifunctional heptose 7-phosphate kinase/heptose 1-	99.76
cd01164		289	FruK_PfkB_like 1-phosphofructokinase (FruK), minor	99.75
TIGR03168		303	1-PFK hexose kinase, 1-phosphofructokinase family.	99.75
PRK09513		312	fruK 1-phosphofructokinase; Provisional	99.74
PRK10294		309	6-phosphofructokinase 2; Provisional	99.74
cd01937		254	ribokinase_group_D Ribokinase-like subgroup D. Fou	99.72
PLN02630		335	pfkB-type carbohydrate kinase family protein	99.69
cd01946		277	ribokinase_group_C Ribokinase-like subgroup C. Fou	99.65
COG2870		467	RfaE ADP-heptose synthase, bifunctional sugar kina	99.56
KOG2947		308	consensus Carbohydrate kinase [Carbohydrate transp	99.51
COG1105		310	FruK Fructose-1-phosphate kinase and related fruct	99.43
cd00287		196	ribokinase_pfkB_like ribokinase/pfkB superfamily:	99.37
KOG3009		614	consensus Predicted carbohydrate kinase, contains	98.21
PRK14039		453	ADP-dependent glucokinase; Provisional	94.76
PRK07105		284	pyridoxamine kinase; Validated	92.23
cd01938		445	ADPGK_ADPPFK ADP-dependent glucokinase (ADPGK) and	91.07
cd01173		254	pyridoxal_pyridoxamine_kinase Pyridoxal kinase pla	90.64
TIGR00687		286	pyridox_kin pyridoxal kinase. ThiD and related pro	90.34
PRK12412		268	pyridoxal kinase; Reviewed	89.81
TIGR02045		446	P_fruct_ADP ADP-specific phosphofructokinase. Phos	89.73
PF04587		444	ADP_PFK_GK: ADP-specific Phosphofructokinase/Gluco	89.61
PRK03979		463	ADP-specific phosphofructokinase; Provisional	88.62
PRK12413		253	phosphomethylpyrimidine kinase; Provisional	88.0
cd01170		242	THZ_kinase 4-methyl-5-beta-hydroxyethylthiazole (T	86.8
PRK08176		281	pdxK pyridoxal-pyridoxamine kinase/hydroxymethylpy	86.5
PF09026		101	CENP-B_dimeris: Centromere protein B dimerisation	84.74
cd01169		242	HMPP_kinase 4-amino-5-hydroxymethyl-2-methyl-pyrim	83.77
PTZ00344		296	pyridoxal kinase; Provisional	83.22
PRK06427		266	bifunctional hydroxy-methylpyrimidine kinase/ hydr	83.05
PF08543		246	Phos_pyr_kin: Phosphomethylpyrimidine kinase; Inte	81.88
PRK10076		213	pyruvate formate lyase II activase; Provisional	81.7
PF06524		314	NOA36: NOA36 protein; InterPro: IPR010531 This fam	81.28
KOG1832		1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	80.46

>PLN02813 pfkB-type carbohydrate kinase family protein	Back alignment and domain information

Probab=100.00  E-value=8.4e-34  Score=284.94  Aligned_cols=241  Identities=71%  Similarity=1.112  Sum_probs=209.2

Q ss_pred             CCCCCcchhhhccCCCCCCCCccEEEEcCceeeeEEecChhHHHhhccccCcceecccccccceeeecccCceEEecCCh
Q 019265          102 DDDGDEYDEEISGSASVLPERWDVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGS  181 (343)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~VlviG~~~vDii~~vd~~fl~~~~L~~g~~~lv~~p~~~~~~~~i~~~~~~~~~GGs  181 (343)
                      ++|++|+|+...+++...+++++|+++|++++|++..+++.|+++++++++++++++.++.+++++++.+..++.++||+
T Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~vl~iG~~~vDi~~~v~~~fl~~~~lp~~~~~~i~~~~~~~l~e~~~~~~~~~~~GG~  128 (426)
T PLN02813         49 QQDEEQPEGFGPIPEKAVPERWDVLGLGQAMVDFSGMVDDEFLERLGLEKGTRKVINHEERGKVLRALDGCSYKASAGGS  128 (426)
T ss_pred             cCCCCCccccCCCCcccCCCcceEEEeCCceeEEEEecCHHHHHHcCCCcCcccccCHHHHHHHHHHhhccCceEecCcH
Confidence            45556667888999999999999999999999999999999999999999999999988887777777777889999999


Q ss_pred             HHHHHHHHHHhCCCCCCCCCCceEEEEEcCCChHHHHHHHHHHhCCCCcceeeeCCCCceEEEEEECCCCCeEEEEecCC
Q 019265          182 LSNSLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDGTTGTVIVLTTPDAQRAMLAYQGT  261 (343)
Q Consensus       182 a~NvA~aLArLG~~~~~~~~~~v~lig~VG~D~~G~~I~~~L~~~GVd~~~v~~~~~~Tg~~iVlid~dGeRt~i~~~Ga  261 (343)
                      ++|+|++|+|||.+|+..++.+|.|+|.||+|.+|+++++.|++.||++..+.+.+.+|++++++++++|+|+++.++|+
T Consensus       129 ~~N~AvalarLG~~~~~~~~~~v~~ig~VG~D~~G~~i~~~L~~~GVd~~~~~~~~~~Tg~~~ilv~~~gertii~~~Ga  208 (426)
T PLN02813        129 LSNTLVALARLGSQSAAGPALNVAMAGSVGSDPLGDFYRTKLRRANVHFLSQPVKDGTTGTVIVLTTPDAQRTMLSYQGT  208 (426)
T ss_pred             HHHHHHHHHHhccccccCCCCcEEEEEEeCCChHHHHHHHHHHHcCCcccceecCCCCceEEEEEEcCCCCceeeeccCc
Confidence            99999999999954444555599999999999999999999999999998887666789999999999999999999999


Q ss_pred             CCCCCCchhhhhccCCceEEEEcCcCCCCCchHHHHHHHHHHHHhCCCEEEEECCCcchhhhcHHHHHH-hcccCcEEEe
Q 019265          262 SSTINYDPCLVNLISKTNIFIVEGYLFELPDTIRTITKACEVAHRSGALVAVTASDVTCIERHYDDFWY-EYYMVLIVVL  340 (343)
Q Consensus       262 ~~~l~~~di~~~~i~~adiv~isG~~l~~p~s~~~i~~ll~~Ak~~G~~V~fD~s~~~~~~~~~e~l~e-lL~~vDIlf~  340 (343)
                      +..++++++..+.+++++++|++||.+..|...+.+.++++.|++.|++|+||+++......+++.+++ +++++||+|+
T Consensus       209 ~~~l~~~~~~~~~i~~adiv~l~g~~~~~~~~~~~~~~~~~~ak~~g~~v~~d~s~~~~~~~~~~~l~~~ll~~vDil~~  288 (426)
T PLN02813        209 SSTVNYDSCLASAISKSRVLVVEGYLWELPQTIEAIAQACEEAHRAGALVAVTASDVSCIERHRDDFWDVMGNYADILFA  288 (426)
T ss_pred             hhhCCccccCHHHHhcCCEEEEEeeecCCCchHHHHHHHHHHHHHcCCEEEEECCCcchhhhhHHHHHHHHHhcCCEEEe
Confidence            888887777777789999999999876556456788999999999999999999876544445555544 4589999999


Q ss_pred             ec
Q 019265          341 EF  342 (343)
Q Consensus       341 ~~  342 (343)
                      |.
T Consensus       289 Ne  290 (426)
T PLN02813        289 NS  290 (426)
T ss_pred             CH
Confidence            84

>PRK15074 inosine/guanosine kinase; Provisional	Back alignment and domain information

>PLN02379 pfkB-type carbohydrate kinase family protein	Back alignment and domain information

>PTZ00247 adenosine kinase; Provisional	Back alignment and domain information

>KOG2854 consensus Possible pfkB family carbohydrate kinase [Carbohydrate transport and metabolism]	Back alignment and domain information

>cd01168 adenosine_kinase Adenosine kinase (AK) catalyzes the phosphorylation of ribofuranosyl-containing nucleoside analogues at the 5'-hydroxyl using ATP or GTP as the phosphate donor	Back alignment and domain information

>PLN02967 kinase	Back alignment and domain information

>PLN02543 pfkB-type carbohydrate kinase family protein	Back alignment and domain information

>PLN02548 adenosine kinase	Back alignment and domain information

>cd01944 YegV_kinase_like YegV-like sugar kinase	Back alignment and domain information

>PRK11142 ribokinase; Provisional	Back alignment and domain information

>cd01174 ribokinase Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP	Back alignment and domain information

>PLN02323 probable fructokinase	Back alignment and domain information

>PTZ00292 ribokinase; Provisional	Back alignment and domain information

>cd01942 ribokinase_group_A Ribokinase-like subgroup A	Back alignment and domain information

>COG0524 RbsK Sugar kinases, ribokinase family [Carbohydrate transport and metabolism]	Back alignment and domain information

>cd01166 KdgK 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP)	Back alignment and domain information

>cd01939 Ketohexokinase Ketohexokinase (fructokinase, KHK) catalyzes the phosphorylation of fructose to fructose-1-phosphate (F1P), the first step in the metabolism of dietary fructose	Back alignment and domain information

>cd01167 bac_FRK Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate	Back alignment and domain information

>PLN02341 pfkB-type carbohydrate kinase family protein	Back alignment and domain information

>cd01945 ribokinase_group_B Ribokinase-like subgroup B	Back alignment and domain information

>PRK09434 aminoimidazole riboside kinase; Provisional	Back alignment and domain information

>cd01940 Fructoselysine_kinase_like Fructoselysine kinase-like	Back alignment and domain information

>cd01947 Guanosine_kinase_like Guanosine kinase-like sugar kinases	Back alignment and domain information

>TIGR02152 D_ribokin_bact ribokinase	Back alignment and domain information

>PF00294 PfkB: pfkB family carbohydrate kinase; InterPro: IPR011611 This entry includes a variety of carbohydrate and pyrimidine kinases	Back alignment and domain information

>PRK09813 fructoselysine 6-kinase; Provisional	Back alignment and domain information

>PRK09850 pseudouridine kinase; Provisional	Back alignment and domain information

>cd01941 YeiC_kinase_like YeiC-like sugar kinase	Back alignment and domain information

>cd01943 MAK32 MAK32 kinase	Back alignment and domain information

>cd01172 RfaE_like RfaE encodes a bifunctional ADP-heptose synthase involved in the biosynthesis of the lipopolysaccharide (LPS) core precursor ADP-L-glycero-D-manno-heptose	Back alignment and domain information

>KOG2855 consensus Ribokinase [Carbohydrate transport and metabolism]	Back alignment and domain information

>PRK09954 putative kinase; Provisional	Back alignment and domain information

>TIGR03828 pfkB 1-phosphofructokinase	Back alignment and domain information

>TIGR02198 rfaE_dom_I rfaE bifunctional protein, domain I	Back alignment and domain information

>PRK13508 tagatose-6-phosphate kinase; Provisional	Back alignment and domain information

>TIGR01231 lacC tagatose-6-phosphate kinase	Back alignment and domain information

>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional	Back alignment and domain information

>cd01164 FruK_PfkB_like 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases	Back alignment and domain information

>TIGR03168 1-PFK hexose kinase, 1-phosphofructokinase family	Back alignment and domain information

>PRK09513 fruK 1-phosphofructokinase; Provisional	Back alignment and domain information

>PRK10294 6-phosphofructokinase 2; Provisional	Back alignment and domain information

>cd01937 ribokinase_group_D Ribokinase-like subgroup D	Back alignment and domain information

>PLN02630 pfkB-type carbohydrate kinase family protein	Back alignment and domain information

>cd01946 ribokinase_group_C Ribokinase-like subgroup C	Back alignment and domain information

>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>KOG2947 consensus Carbohydrate kinase [Carbohydrate transport and metabolism]	Back alignment and domain information

>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]	Back alignment and domain information

>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group	Back alignment and domain information

>KOG3009 consensus Predicted carbohydrate kinase, contains PfkB domain [General function prediction only]	Back alignment and domain information

>PRK14039 ADP-dependent glucokinase; Provisional	Back alignment and domain information

>PRK07105 pyridoxamine kinase; Validated	Back alignment and domain information

>cd01938 ADPGK_ADPPFK ADP-dependent glucokinase (ADPGK) and phosphofructokinase (ADPPFK)	Back alignment and domain information

>cd01173 pyridoxal_pyridoxamine_kinase Pyridoxal kinase plays a key role in the synthesis of the active coenzyme pyridoxal-5'-phosphate (PLP), by catalyzing the phosphorylation of the precursor vitamin B6 in the presence of Zn2+ and ATP	Back alignment and domain information

>TIGR00687 pyridox_kin pyridoxal kinase	Back alignment and domain information

>PRK12412 pyridoxal kinase; Reviewed	Back alignment and domain information

>TIGR02045 P_fruct_ADP ADP-specific phosphofructokinase	Back alignment and domain information

>PF04587 ADP_PFK_GK: ADP-specific Phosphofructokinase/Glucokinase conserved region; InterPro: IPR007666 Although ATP is the most common phosphoryl group donor for kinases, certain hyperthermophilic archaea, such as Thermococcus litoralis and Pyrococcus furiosus, utilise unusual ADP-dependent glucokinases (ADPGKs) and phosphofructokinases (ADPPKKs) in their glycolytic pathways [, , ]	Back alignment and domain information

>PRK03979 ADP-specific phosphofructokinase; Provisional	Back alignment and domain information

>PRK12413 phosphomethylpyrimidine kinase; Provisional	Back alignment and domain information

>cd01170 THZ_kinase 4-methyl-5-beta-hydroxyethylthiazole (Thz) kinase catalyzes the phosphorylation of the hydroxylgroup of Thz	Back alignment and domain information

>PRK08176 pdxK pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase; Reviewed	Back alignment and domain information

>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box	Back alignment and domain information

>cd01169 HMPP_kinase 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1	Back alignment and domain information

>PTZ00344 pyridoxal kinase; Provisional	Back alignment and domain information

>PRK06427 bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed	Back alignment and domain information

>PF08543 Phos_pyr_kin: Phosphomethylpyrimidine kinase; InterPro: IPR013749 This enzyme 2	Back alignment and domain information

>PRK10076 pyruvate formate lyase II activase; Provisional	Back alignment and domain information

>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues	Back alignment and domain information

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		343
3ubo_A		354	The Crystal Structure Of Adenosine Kinase From Sino		2e-20
4e3a_A		352	Crystal Structure Of Probable Sugar Kinase Protein		6e-16
1bx4_A		345	Structure Of Human Adenosine Kinase At 1.50 Angstro		1e-04
1rk2_A		309	E. Coli Ribokinase Complexed With Ribose And Adp, S		3e-04

>pdb|3UBO|A Chain A, The Crystal Structure Of Adenosine Kinase From Sinorhizobium Meliloti Length = 354

Back alignment and structure

Iteration: 1

Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 64/209 (30%), Positives = 103/209 (49%), Gaps = 13/209 (6%) Query: 122 RWDVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGS 181 ++DVL +G A+VD DD FLE G+ KG L+N +R +L + G + +A+ GGS Sbjct: 5 KYDVLTIGNAIVDIIARCDDSFLEENGIIKGAXNLIN-ADRAELLYSRXGPAVEAS-GGS 62 Query: 182 LSNSLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDGT-- 239 N+ +A LGG+ A G V D LG + +R V F ++P+ DG Sbjct: 63 AGNTAAGVASLGGR--------AAYFGKVADDQLGEIFTHDIRAQGVHFQTKPL-DGHPP 113 Query: 240 TGTVIVLTTPDAQRAMLAYQGTSSTINYDPCLVNLISKTNIFIVEGYLFELPDTIRTITK 299 T + T D +R+ Y G + + ++++++ + EGYL++ P I + Sbjct: 114 TARSXIFVTEDGERSXNTYLGACVELGPEDVEDDVVAQSKVTYFEGYLWDPPRAKDAIRE 173 Query: 300 ACEVAHRSGALVAVTASDVTCIERHYDDF 328 A +AH G A T SD C+ R+ +F Sbjct: 174 AARIAHAHGRETAXTLSDSFCVHRYRSEF 202

PyMOL of 3ubo

>pdb|4E3A|A Chain A, Crystal Structure Of Probable Sugar Kinase Protein From Rhizobium Etli Cfn 42 Length = 352

Back alignment and structure

>pdb|1BX4|A Chain A, Structure Of Human Adenosine Kinase At 1.50 Angstroms Length = 345

Back alignment and structure

>pdb|1RK2|A Chain A, E. Coli Ribokinase Complexed With Ribose And Adp, Solved In Space Group P212121 Length = 309

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		343
4e3a_A		352	Sugar kinase protein; structural genomics, protein	8e-73
3otx_A		347	Adenosine kinase, putative; AP5A, transferase-tran	6e-57
1bx4_A		345	Protein (adenosine kinase); human adenosine kinase	5e-51
3loo_A		365	Anopheles gambiae adenosine kinase; AP4A, P4-DI(ad	2e-48
2abs_A		383	Adenosine kinase, AK; ribokinase fold, alpha/beta,	5e-47
2hlz_A		312	Ketohexokinase; non-protein kinase, creatine kinas	4e-28
3h49_A		325	Ribokinase; transferase,PFKB family,sugar kinase Y	1e-13
2c4e_A		302	Sugar kinase MJ0406; transferase, nucleoside kinas	1e-11
2qcv_A		332	Putative 5-dehydro-2-deoxygluconokinase; structura	5e-11
2pkf_A		334	Adenosine kinase; transferase, S genomics, TB stru	1e-10
2rbc_A		343	Sugar kinase, AGR_C_4560P; ribokinase family, ATP-	1e-10
1tyy_A		339	Putative sugar kinase; ribokinase fold, alpha/beta	3e-10
3hj6_A		327	Fructokinase, FRK; fructose, transferase, carbohyd	8e-10
3pl2_A		319	Sugar kinase, ribokinase family; PFKB PFAM motif,	1e-09
2nwh_A		317	AGR_C_3442P, carbohydrate kinase; structural genom	3e-09
1v1a_A		309	2-keto-3-deoxygluconate kinase; ATP, structural ge	6e-09
3iq0_A		330	Putative ribokinase II; transferase,kinase,SAD,rib	1e-08
3ikh_A		299	Carbohydrate kinase; transferase,kinase,SAD,ribose	2e-08
2qhp_A		296	Fructokinase; NP_810670.1, PFKB family carbohydrat	3e-08
3ljs_A		338	Fructokinase; fructokianse, PSI2, NYSGXRC, structu	3e-08
4du5_A		336	PFKB; structural genomics, PSI-biology, NEW YORK s	6e-08
3ewm_A		313	Uncharacterized sugar kinase PH1459; carbohydrate	6e-08
1rkd_A		309	Ribokinase; carbohydrate kinase, ribose, nucleotid	1e-07
2fv7_A		331	Ribokinase; structural genomics, structural genomi	2e-07
3go6_A		310	Ribokinase RBSK; phosphofructokinase, carbohydrate	2e-07
2v78_A		313	Fructokinase; transferase, PFKB family carbohydrat	3e-07
2dcn_A		311	Hypothetical fructokinase; 2-keto-3-deoxygluconate	4e-07
3lhx_A		319	Ketodeoxygluconokinase; structural genomics, PSI-2	5e-07
3ry7_A		304	Ribokinase; transferase; 2.15A {Staphylococcus aur	5e-07
1vk4_A		298	PFKB carbohydrate kinase TM0415; structural genomi	2e-06
3kd6_A		313	Carbohydrate kinase, PFKB family; nucleoside kinas	2e-06
1vm7_A		311	Ribokinase; TM0960, structural genomics, JCSG, pro	2e-06
4e69_A		328	2-dehydro-3-deoxygluconokinase; putative sugar kin	7e-06
3kzh_A		328	Probable sugar kinase; NYSGXRC, PSI-II, protein st	1e-05
2afb_A		351	2-keto-3-deoxygluconate kinase; TM0067, 2-dehydro-	2e-05
3ktn_A		346	Carbohydrate kinase, PFKB family; PFKB family,ribo	3e-05
3bf5_A		306	Ribokinase related protein; 10640157, putative rib	6e-05
3b1n_A		326	Ribokinase, putative; rossmann fold, ATP binding,	2e-04

>4e3a_A Sugar kinase protein; structural genomics, protein structure initiative, nysgrc, S kinase, PSI-biology; HET: ADN; 1.63A {Rhizobium etli} PDB: 3ubo_A* Length = 352	Back alignment and structure

 Score =  228 bits (584), Expect = 8e-73
 Identities = 56/209 (26%), Positives = 96/209 (45%), Gaps = 11/209 (5%)

Query: 122 RWDVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGS 181
           R+DVL +G A+VD     +D FL    + K    L++ E    +   M       A+GGS
Sbjct: 25  RFDVLTVGNAIVDIISRCNDQFLIDNQITKAAMNLIDAERAELLYSRMG--PALEASGGS 82

Query: 182 LSNSLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDG-TT 240
             N+   +A LGGK         A  G+V +D LG  +   +R   V + ++P      T
Sbjct: 83  AGNTAAGVANLGGK--------AAYFGNVAADQLGDIFTHDIRAQGVHYQTKPKGAFPPT 134

Query: 241 GTVIVLTTPDAQRAMLAYQGTSSTINYDPCLVNLISKTNIFIVEGYLFELPDTIRTITKA 300
              ++  T D +R+M  Y G    +  +    ++++   +   EGYL++ P     I   
Sbjct: 135 ARSMIFVTEDGERSMNTYLGACVELGPEDVEADVVADAKVTYFEGYLWDPPRAKEAILDC 194

Query: 301 CEVAHRSGALVAVTASDVTCIERHYDDFW 329
             +AH+ G  +++T SD  C++R+  +F 
Sbjct: 195 ARIAHQHGREMSMTLSDSFCVDRYRGEFL 223

PyMOL of 4e3a

>3otx_A Adenosine kinase, putative; AP5A, transferase-transferase inhibitor CO; HET: AP5; 1.55A {Trypanosoma brucei} PDB: 2xtb_A* Length = 347	Back alignment and structure

>1bx4_A Protein (adenosine kinase); human adenosine kinase, transferase; HET: ADN; 1.50A {Homo sapiens} SCOP: c.72.1.1 PDB: 2i6a_A* 2i6b_A* Length = 345	Back alignment and structure

>3loo_A Anopheles gambiae adenosine kinase; AP4A, P4-DI(adenosi tetraphosphate, transferase; HET: B4P; 2.00A {Anopheles gambiae} Length = 365	Back alignment and structure

>2abs_A Adenosine kinase, AK; ribokinase fold, alpha/beta, intermediate conformation, signaling protein,transferase; HET: ACP; 1.10A {Toxoplasma gondii} SCOP: c.72.1.1 PDB: 2a9z_A* 2aa0_A* 2ab8_A* 2a9y_A* 1dgm_A* 1lio_A 1lii_A* 1lij_A* 1lik_A* Length = 383	Back alignment and structure

>2hlz_A Ketohexokinase; non-protein kinase, creatine kinase, fructokinase, isoform A, structural genomics, structural genomics consortium, SGC transferase; 1.85A {Homo sapiens} PDB: 2hqq_A 2hw1_A* 3nbv_A* 3nbw_A* 3nc2_A* 3nc9_A* 3nca_A* 3q92_A* 3qa2_A* 3qai_A* 3ro4_A* 3b3l_A Length = 312	Back alignment and structure

>3h49_A Ribokinase; transferase,PFKB family,sugar kinase YDJH, NYSGXRC,11206A,PSI2,, structural genomics, protein structure initiative; 1.80A {Escherichia coli k-12} PDB: 3in1_A* Length = 325	Back alignment and structure

>2c4e_A Sugar kinase MJ0406; transferase, nucleoside kinase, hyperthermophIle, ribokinase ribokinase fold; 1.70A {Methanococcus jannaschii} PDB: 2c49_A Length = 302	Back alignment and structure

>2qcv_A Putative 5-dehydro-2-deoxygluconokinase; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.90A {Bacillus halodurans c-125} Length = 332	Back alignment and structure

>2pkf_A Adenosine kinase; transferase, S genomics, TB structural genomics consortium, TBSGC; 1.50A {Mycobacterium tuberculosis} PDB: 2pkk_A* 2pkm_A* 2pkn_A* Length = 334	Back alignment and structure

>2rbc_A Sugar kinase, AGR_C_4560P; ribokinase family, ATP-binding site, structura genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Agrobacterium tumefaciens str} Length = 343	Back alignment and structure

>1tyy_A Putative sugar kinase; ribokinase fold, alpha/beta, transferase; 2.60A {Salmonella typhimurium LT2} SCOP: c.72.1.1 PDB: 1tz3_A* 1tz6_A* Length = 339	Back alignment and structure

>3hj6_A Fructokinase, FRK; fructose, transferase, carbohydrate ME; 2.80A {Halothermothrix orenii} Length = 327	Back alignment and structure

>3pl2_A Sugar kinase, ribokinase family; PFKB PFAM motif, inositol phosphate metabolism, ribokinase-L structural genomics; HET: MSE CIT; 1.89A {Corynebacterium glutamicum} Length = 319	Back alignment and structure

>2nwh_A AGR_C_3442P, carbohydrate kinase; structural genomics, APC6199, PSI-2, PR structure initiative 2; 1.86A {Agrobacterium tumefaciens str} Length = 317	Back alignment and structure

>1v1a_A 2-keto-3-deoxygluconate kinase; ATP, structural genomics, transferase, riken structural genomics/proteomics initiative, RSGI; HET: KDG ADP; 2.1A {Thermus thermophilus} SCOP: c.72.1.1 PDB: 1v19_A* 1v1b_A* 1v1s_A Length = 309	Back alignment and structure

>3iq0_A Putative ribokinase II; transferase,kinase,SAD,ribose, D-ribose metabolic process, PFKB family,11206G, PSI-II, NYSGXRC, structural genomics; HET: ATP; 1.79A {Escherichia coli O6} PDB: 3k9e_A Length = 330	Back alignment and structure

>3ikh_A Carbohydrate kinase; transferase,kinase,SAD,ribose,D-ribose metabolic process,ATP ribokinase, PFKB family,11206L1,PSI-II,nysgxrc; HET: ATP; 1.88A {Klebsiella pneumoniae subsp} PDB: 3i3y_A* Length = 299	Back alignment and structure

>2qhp_A Fructokinase; NP_810670.1, PFKB family carbohydrate kinase, structural genomics, joint center for structural genomics; HET: MSE; 1.80A {Bacteroides thetaiotaomicron vpi-5482} Length = 296	Back alignment and structure

>3ljs_A Fructokinase; fructokianse, PSI2, NYSGXRC, structural genomics, protein structure initiative; 1.97A {Xylella fastidiosa TEMECULA1} PDB: 3lki_A* Length = 338	Back alignment and structure

>4du5_A PFKB; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.70A {Polaromonas SP} Length = 336	Back alignment and structure

>3ewm_A Uncharacterized sugar kinase PH1459; carbohydrate kinase, PFKB family, PSI-II, NYSGXRC, structural genomics, protein structure initiative; 1.90A {Pyrococcus horikoshii} PDB: 3ih0_A* 3gbu_A* Length = 313	Back alignment and structure

>1rkd_A Ribokinase; carbohydrate kinase, ribose, nucleotide binding, transferase; HET: RIB ADP; 1.84A {Escherichia coli} SCOP: c.72.1.1 PDB: 1gqt_A* 1rka_A 1rk2_A* 1rks_A* Length = 309	Back alignment and structure

>2fv7_A Ribokinase; structural genomics, structural genomics consort transferase; HET: ADP; 2.10A {Homo sapiens} SCOP: c.72.1.1 Length = 331	Back alignment and structure

>3go6_A Ribokinase RBSK; phosphofructokinase, carbohydrate kinase, transferase; HET: RIB ADP; 1.98A {Mycobacterium tuberculosis} PDB: 3go7_A* Length = 310	Back alignment and structure

>2v78_A Fructokinase; transferase, PFKB family carbohydrate kinase, 2- keto-3-deoxygluconate kinase; 2.00A {Sulfolobus solfataricus} PDB: 2var_A* Length = 313	Back alignment and structure

>2dcn_A Hypothetical fructokinase; 2-keto-3-deoxygluconate kinase, 2-keto- gluconate, transferase; HET: CKP ADP; 2.25A {Sulfolobus tokodaii} SCOP: c.72.1.1 PDB: 1wye_A* Length = 311	Back alignment and structure

>3lhx_A Ketodeoxygluconokinase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.87A {Shigella flexneri} Length = 319	Back alignment and structure

>3ry7_A Ribokinase; transferase; 2.15A {Staphylococcus aureus} Length = 304	Back alignment and structure

>1vk4_A PFKB carbohydrate kinase TM0415; structural genomics, JCSG, protein structure initiative, joint center for structural G transferase; 1.91A {Thermotoga maritima} SCOP: c.72.1.1 Length = 298	Back alignment and structure

>3kd6_A Carbohydrate kinase, PFKB family; nucleoside kinase, AMP, PSI-II, NYSGXRC, struc genomics, protein structure initiative; HET: AMP; 1.88A {Chlorobaculum tepidum} Length = 313	Back alignment and structure

>1vm7_A Ribokinase; TM0960, structural genomics, JCSG, protein struc initiative, PSI, joint center for structural genomics, TRAN; 2.15A {Thermotoga maritima} SCOP: c.72.1.1 Length = 311	Back alignment and structure

>4e69_A 2-dehydro-3-deoxygluconokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Oceanicola granulosus} PDB: 4ebu_A* 4eum_A* Length = 328	Back alignment and structure

>3kzh_A Probable sugar kinase; NYSGXRC, PSI-II, protein structure initiative, modified lysin, structural genomics; HET: BGC; 2.45A {Clostridium perfringens} Length = 328	Back alignment and structure

>2afb_A 2-keto-3-deoxygluconate kinase; TM0067, 2-dehydro-3- deoxygluconokinase, PFKB family carbohy kinase, structural genomics; 2.05A {Thermotoga maritima} SCOP: c.72.1.1 Length = 351	Back alignment and structure

>3ktn_A Carbohydrate kinase, PFKB family; PFKB family,ribokianse,2-keto-3-deoxygluconate kinase,PSI-II, NYSGXRC,, structural genomics; 2.26A {Enterococcus faecalis} Length = 346	Back alignment and structure

>3bf5_A Ribokinase related protein; 10640157, putative ribokinase, structural genomics, joint CE structural genomics, JCSG; HET: MSE; 1.91A {Thermoplasma acidophilum dsm 1728} Length = 306	Back alignment and structure

>3b1n_A Ribokinase, putative; rossmann fold, ATP binding, Mg binding, nucleoside B transferase; HET: MZR ADP; 1.55A {Burkholderia thailandensis} PDB: 3b1o_A 3b1p_A* 3b1q_A* 3b1r_A* Length = 326	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		343
3uq6_A		372	Adenosine kinase, putative; ribokinase, transferas	99.97
4e3a_A		352	Sugar kinase protein; structural genomics, protein	99.97
3otx_A		347	Adenosine kinase, putative; AP5A, transferase-tran	99.97
3vas_A		370	Putative adenosine kinase; ribokinase, enzyme, tra	99.97
3loo_A		365	Anopheles gambiae adenosine kinase; AP4A, P4-DI(ad	99.97
1bx4_A		345	Protein (adenosine kinase); human adenosine kinase	99.95
2abs_A		383	Adenosine kinase, AK; ribokinase fold, alpha/beta,	99.95
3go6_A		310	Ribokinase RBSK; phosphofructokinase, carbohydrate	99.94
3ljs_A		338	Fructokinase; fructokianse, PSI2, NYSGXRC, structu	99.93
3ikh_A		299	Carbohydrate kinase; transferase,kinase,SAD,ribose	99.93
2rbc_A		343	Sugar kinase, AGR_C_4560P; ribokinase family, ATP-	99.93
3ktn_A		346	Carbohydrate kinase, PFKB family; PFKB family,ribo	99.92
1v1a_A		309	2-keto-3-deoxygluconate kinase; ATP, structural ge	99.92
2hlz_A		312	Ketohexokinase; non-protein kinase, creatine kinas	99.92
3iq0_A		330	Putative ribokinase II; transferase,kinase,SAD,rib	99.92
3hj6_A		327	Fructokinase, FRK; fructose, transferase, carbohyd	99.92
2c4e_A		302	Sugar kinase MJ0406; transferase, nucleoside kinas	99.92
3ry7_A		304	Ribokinase; transferase; 2.15A {Staphylococcus aur	99.92
3ewm_A		313	Uncharacterized sugar kinase PH1459; carbohydrate	99.92
4du5_A		336	PFKB; structural genomics, PSI-biology, NEW YORK s	99.91
3h49_A		325	Ribokinase; transferase,PFKB family,sugar kinase Y	99.91
1rkd_A		309	Ribokinase; carbohydrate kinase, ribose, nucleotid	99.91
2fv7_A		331	Ribokinase; structural genomics, structural genomi	99.91
4e69_A		328	2-dehydro-3-deoxygluconokinase; putative sugar kin	99.91
2qcv_A		332	Putative 5-dehydro-2-deoxygluconokinase; structura	99.91
3lhx_A		319	Ketodeoxygluconokinase; structural genomics, PSI-2	99.91
3pl2_A		319	Sugar kinase, ribokinase family; PFKB PFAM motif,	99.91
2pkf_A		334	Adenosine kinase; transferase, S genomics, TB stru	99.9
1tyy_A		339	Putative sugar kinase; ribokinase fold, alpha/beta	99.9
4gm6_A		351	PFKB family carbohydrate kinase; enzyme function i	99.9
3b1n_A		326	Ribokinase, putative; rossmann fold, ATP binding,	99.9
3kzh_A		328	Probable sugar kinase; NYSGXRC, PSI-II, protein st	99.89
1vm7_A		311	Ribokinase; TM0960, structural genomics, JCSG, pro	99.89
2nwh_A		317	AGR_C_3442P, carbohydrate kinase; structural genom	99.89
2dcn_A		311	Hypothetical fructokinase; 2-keto-3-deoxygluconate	99.88
2v78_A		313	Fructokinase; transferase, PFKB family carbohydrat	99.88
3bf5_A		306	Ribokinase related protein; 10640157, putative rib	99.88
3ie7_A		320	LIN2199 protein; phosphofructokinases, transferase	99.87
2ajr_A		331	Sugar kinase, PFKB family; TM0828, possible 1-phos	99.87
2qhp_A		296	Fructokinase; NP_810670.1, PFKB family carbohydrat	99.86
2afb_A		351	2-keto-3-deoxygluconate kinase; TM0067, 2-dehydro-	99.86
2f02_A		323	Tagatose-6-phosphate kinase; LACC, structural geno	99.85
3cqd_A		309	6-phosphofructokinase isozyme 2; phosphofructokina	99.85
3umo_A		309	6-phosphofructokinase isozyme 2; glycolysis, trans	99.85
2jg1_A		330	Tagatose-6-phosphate kinase; phosphoryl transfer,	99.84
4e84_A		352	D-beta-D-heptose 7-phosphate kinase; LPS-heptose b	99.83
2abq_A		306	Fructose 1-phosphate kinase; dimer, structural gen	99.82
2jg5_A		306	Fructose 1-phosphate kinase; 1-phosphofructokinase	99.81
3kd6_A		313	Carbohydrate kinase, PFKB family; nucleoside kinas	99.78
1vk4_A		298	PFKB carbohydrate kinase TM0415; structural genomi	99.73
2yxt_A		312	Pyridoxal kinase; beta sheet with alpha helix, met	98.04
2ddm_A		283	Pyridoxine kinase; pyridoxal kinase, ribokinase, p	97.54
3drw_A		474	ADP-specific phosphofructokinase; AMP, GLYC kinase	96.35
1jxh_A		288	Phosphomethylpyrimidine kinase; THID, ribokinase f	96.2
1gc5_A		467	ADP-dependent glucokinase; ALFA/beta sandwichs, in	94.83
1ua4_A		455	Glucokinase, ADP-dependent glucokinase; transferas	93.59
1l2l_A		457	ADP-dependent glucokinase; ADP glucokinase APO, tr	92.89
3mbh_A		291	Putative phosphomethylpyrimidine kinase; structura	92.69
3zs7_A		300	Pyridoxal kinase; transferase, sleeping sickness;	90.72
1ub0_A		258	THID, phosphomethylpyrimidine kinase; thiamin bios	89.59
1ekq_A		272	Hydroxyethylthiazole kinase; alpha-beta, transfera	89.31
2i5b_A		271	Phosphomethylpyrimidine kinase; ADP complex, PDXK,	88.36
3pzs_A		289	PM kinase, pyridoxamine kinase; structural genomic	87.7
3h74_A		282	Pyridoxal kinase; PSI-II, structural genomics, pro	86.74

>3uq6_A Adenosine kinase, putative; ribokinase, transferase; HET: ADN AMP; 2.30A {Schistosoma mansoni} PDB: 3uq9_A*	Back alignment and structure

Probab=99.97  E-value=1.8e-31  Score=260.67  Aligned_cols=214  Identities=16%  Similarity=0.219  Sum_probs=182.7

Q ss_pred             CCCccEEEEcCceeeeEEecChhHHHhhccccCcceecccccccceeeec-ccCceEEecCChHHHHHHHHHHhCCCCCC
Q 019265          120 PERWDVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAM-DGCSYKAAAGGSLSNSLVALARLGGKPIG  198 (343)
Q Consensus       120 ~~~~~VlviG~~~vDii~~vd~~fl~~~~L~~g~~~lv~~p~~~~~~~~i-~~~~~~~~~GGsa~NvA~aLArLG~~~~~  198 (343)
                      .....|++||+++||+++.+++.|+++++|++|.+++++..+.. .+..+ .....+..+||+++|+|+++++||.+   
T Consensus        24 ~~~~~v~giGnalvDi~~~v~d~~l~~~~l~kg~m~l~~~~~~~-~~~~~~~~~~~~~~~GGsa~N~a~~la~LG~~---   99 (372)
T 3uq6_A           24 LSEGYVFGMGNPLLDIIVDADDFMYRKYNLKKDNIVLAEEKHMT-IYDEIQKKKKLNYIAGGATLNTVKMIQWIIQK---   99 (372)
T ss_dssp             CCTTCEEEEECCEEEEEEECCTHHHHHTTCCTTEEEECCGGGTT-HHHHHHTSSSCEEEECCHHHHHHHHHHHHHCS---
T ss_pred             CCCCeEEEECCceeeEEEEeCHHHHHHcCCCCCceEEcCHHHHH-HHHHHhccCCeEEeCCcHHHHHHHHHHHcCCC---
Confidence            33445999999999999999999999999999999999854432 22222 34467789999999999999999972   


Q ss_pred             CCCCceEEEEEcCCChHHHHHHHHHHhCCCCcceeeeC-CCCceEEEEEECCCCCeEEEEecCCCCCCCCchhh----hh
Q 019265          199 GPALNVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIK-DGTTGTVIVLTTPDAQRAMLAYQGTSSTINYDPCL----VN  273 (343)
Q Consensus       199 ~~~~~v~lig~VG~D~~G~~I~~~L~~~GVd~~~v~~~-~~~Tg~~iVlid~dGeRt~i~~~Ga~~~l~~~di~----~~  273 (343)
                        ...|.|+|+||+|.+|+++++.|++.||+++++... +.+|+.|+++++ +|+|++++++|++..++++++.    +.
T Consensus       100 --~~~~~fiG~VG~D~~G~~l~~~L~~~GV~~~~~~~~~~~~T~~~~v~~~-dgert~~~~~ga~~~l~~~~i~~~~~~~  176 (372)
T 3uq6_A          100 --PFVCSYVGCIGADIQGKYIKNDCSALDLVTEFQIAEEPLMTGKVAVLVS-EKLRSMVTYLGAACDLSLAHIEQPHVWS  176 (372)
T ss_dssp             --TTSEEEEEEECSSHHHHHHHHHHHHTTCEECCEECCTTCCEEEEEEEEC-SSCEEEEEEEEGGGGCCHHHHTSHHHHH
T ss_pred             --CCcEEEEeeecCCHHHHHHHHHHHHcCCCceeeeecCCCCceEEEEEcC-CCceEEEEeccchhhcchhhhhhhhHHH
Confidence              225999999999999999999999999999988754 468999998886 8999999999999999887764    35


Q ss_pred             ccCCceEEEEcCcCCCCCchHHHHHHHHHHHHhCCCEEEEECCCcchhhhcHHHHHHhcccCcEEEeec
Q 019265          274 LISKTNIFIVEGYLFELPDTIRTITKACEVAHRSGALVAVTASDVTCIERHYDDFWYEYYMVLIVVLEF  342 (343)
Q Consensus       274 ~i~~adiv~isG~~l~~p~s~~~i~~ll~~Ak~~G~~V~fD~s~~~~~~~~~e~l~elL~~vDIlf~~~  342 (343)
                      .+++++|+|++||.+.  ...+.+.++++.|+++|++++||++.+++.+.+++.+.++++++||+|+|-
T Consensus       177 ~i~~a~~~~~~g~~~~--~~~~~~~~~~~~a~~~g~~v~ldls~~~~~~~~~~~l~~ll~~~Dil~~Ne  243 (372)
T 3uq6_A          177 LVEKAQVYYIAGFVIN--TCYEGMLKIAKHSLENEKLFCFNLSAPFLSQFNTKEVDEMISYSNIVFGNE  243 (372)
T ss_dssp             HHHHCSEEEEEGGGHH--HHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHCHHHHHHHHTTCSEEEEEH
T ss_pred             HhhcccEEEEeccccc--ccHHHHHHHHHHHHHcCCeEeeccccchhhhhhHHHHHHHhhcCCcccCCH
Confidence            6789999999999753  246788999999999999999999988777888999999999999999983

PyMOL of 3uq6

>4e3a_A Sugar kinase protein; structural genomics, protein structure initiative, nysgrc, S kinase, PSI-biology; HET: ADN; 1.63A {Rhizobium etli} PDB: 3ubo_A*	Back alignment and structure

>3otx_A Adenosine kinase, putative; AP5A, transferase-transferase inhibitor CO; HET: AP5; 1.55A {Trypanosoma brucei} PDB: 2xtb_A*	Back alignment and structure

>3vas_A Putative adenosine kinase; ribokinase, enzyme, transferase; HET: ADN; 2.26A {Schistosoma mansoni} PDB: 4dc3_A* 3vaq_A* 3uq6_A* 3uq9_A*	Back alignment and structure

>3loo_A Anopheles gambiae adenosine kinase; AP4A, P4-DI(adenosi tetraphosphate, transferase; HET: B4P; 2.00A {Anopheles gambiae}	Back alignment and structure

>1bx4_A Protein (adenosine kinase); human adenosine kinase, transferase; HET: ADN; 1.50A {Homo sapiens} SCOP: c.72.1.1 PDB: 2i6a_A* 2i6b_A*	Back alignment and structure

>2abs_A Adenosine kinase, AK; ribokinase fold, alpha/beta, intermediate conformation, signaling protein,transferase; HET: ACP; 1.10A {Toxoplasma gondii} SCOP: c.72.1.1 PDB: 2a9z_A* 2aa0_A* 2ab8_A* 2a9y_A* 1dgm_A* 1lio_A 1lii_A* 1lij_A* 1lik_A*	Back alignment and structure

>3go6_A Ribokinase RBSK; phosphofructokinase, carbohydrate kinase, transferase; HET: RIB ADP; 1.98A {Mycobacterium tuberculosis} PDB: 3go7_A*	Back alignment and structure

>3ljs_A Fructokinase; fructokianse, PSI2, NYSGXRC, structural genomics, protein structure initiative; 1.97A {Xylella fastidiosa TEMECULA1} SCOP: c.72.1.0 PDB: 3lki_A*	Back alignment and structure

>3ikh_A Carbohydrate kinase; transferase,kinase,SAD,ribose,D-ribose metabolic process,ATP ribokinase, PFKB family,11206L1,PSI-II,nysgxrc; HET: ATP; 1.88A {Klebsiella pneumoniae subsp} PDB: 3i3y_A*	Back alignment and structure

>2rbc_A Sugar kinase, AGR_C_4560P; ribokinase family, ATP-binding site, structura genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Agrobacterium tumefaciens str}	Back alignment and structure

>3ktn_A Carbohydrate kinase, PFKB family; PFKB family,ribokianse,2-keto-3-deoxygluconate kinase,PSI-II, NYSGXRC,, structural genomics; 2.26A {Enterococcus faecalis}	Back alignment and structure

>1v1a_A 2-keto-3-deoxygluconate kinase; ATP, structural genomics, transferase, riken structural genomics/proteomics initiative, RSGI; HET: KDG ADP; 2.1A {Thermus thermophilus} SCOP: c.72.1.1 PDB: 1v19_A* 1v1b_A* 1v1s_A	Back alignment and structure

>2hlz_A Ketohexokinase; non-protein kinase, creatine kinase, fructokinase, isoform A, structural genomics, structural genomics consortium, SGC transferase; 1.85A {Homo sapiens} PDB: 2hqq_A 2hw1_A* 3nbv_A* 3nbw_A* 3nc2_A* 3nc9_A* 3nca_A* 3q92_A* 3qa2_A* 3qai_A* 3ro4_A* 3b3l_A	Back alignment and structure

>3iq0_A Putative ribokinase II; transferase,kinase,SAD,ribose, D-ribose metabolic process, PFKB family,11206G, PSI-II, NYSGXRC, structural genomics; HET: ATP; 1.79A {Escherichia coli O6} SCOP: c.72.1.0 PDB: 3k9e_A	Back alignment and structure

>3hj6_A Fructokinase, FRK; fructose, transferase, carbohydrate ME; 2.80A {Halothermothrix orenii}	Back alignment and structure

>2c4e_A Sugar kinase MJ0406; transferase, nucleoside kinase, hyperthermophIle, ribokinase ribokinase fold; 1.70A {Methanococcus jannaschii} PDB: 2c49_A	Back alignment and structure

>3ry7_A Ribokinase; transferase; 2.15A {Staphylococcus aureus}	Back alignment and structure

>3ewm_A Uncharacterized sugar kinase PH1459; carbohydrate kinase, PFKB family, PSI-II, NYSGXRC, structural genomics, protein structure initiative; 1.90A {Pyrococcus horikoshii} PDB: 3ih0_A* 3gbu_A*	Back alignment and structure

>4du5_A PFKB; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.70A {Polaromonas SP}	Back alignment and structure

>3h49_A Ribokinase; transferase,PFKB family,sugar kinase YDJH, NYSGXRC,11206A,PSI2,, structural genomics, protein structure initiative; 1.80A {Escherichia coli k-12} PDB: 3in1_A*	Back alignment and structure

>1rkd_A Ribokinase; carbohydrate kinase, ribose, nucleotide binding, transferase; HET: RIB ADP; 1.84A {Escherichia coli} SCOP: c.72.1.1 PDB: 1gqt_A* 1rka_A 1rk2_A* 1rks_A*	Back alignment and structure

>2fv7_A Ribokinase; structural genomics, structural genomics consort transferase; HET: ADP; 2.10A {Homo sapiens} SCOP: c.72.1.1	Back alignment and structure

>4e69_A 2-dehydro-3-deoxygluconokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Oceanicola granulosus} PDB: 4ebu_A* 4eum_A*	Back alignment and structure

>2qcv_A Putative 5-dehydro-2-deoxygluconokinase; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.90A {Bacillus halodurans c-125}	Back alignment and structure

>3lhx_A Ketodeoxygluconokinase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.87A {Shigella flexneri}	Back alignment and structure

>3pl2_A Sugar kinase, ribokinase family; PFKB PFAM motif, inositol phosphate metabolism, ribokinase-L structural genomics; HET: MSE CIT; 1.89A {Corynebacterium glutamicum} SCOP: c.72.1.0	Back alignment and structure

>2pkf_A Adenosine kinase; transferase, S genomics, TB structural genomics consortium, TBSGC; 1.50A {Mycobacterium tuberculosis} PDB: 2pkk_A* 2pkm_A* 2pkn_A*	Back alignment and structure

>1tyy_A Putative sugar kinase; ribokinase fold, alpha/beta, transferase; 2.60A {Salmonella typhimurium LT2} SCOP: c.72.1.1 PDB: 1tz3_A* 1tz6_A*	Back alignment and structure

>4gm6_A PFKB family carbohydrate kinase; enzyme function initiative, transferase; 2.00A {Listeria grayi dsm 20601}	Back alignment and structure

>3b1n_A Ribokinase, putative; rossmann fold, ATP binding, Mg binding, nucleoside B transferase; HET: MZR ADP; 1.55A {Burkholderia thailandensis} PDB: 3b1o_A 3b1p_A* 3b1q_A* 3b1r_A*	Back alignment and structure

>3kzh_A Probable sugar kinase; NYSGXRC, PSI-II, protein structure initiative, modified lysin, structural genomics; HET: BGC; 2.45A {Clostridium perfringens}	Back alignment and structure

>1vm7_A Ribokinase; TM0960, structural genomics, JCSG, protein struc initiative, PSI, joint center for structural genomics, TRAN; 2.15A {Thermotoga maritima} SCOP: c.72.1.1	Back alignment and structure

>2nwh_A AGR_C_3442P, carbohydrate kinase; structural genomics, APC6199, PSI-2, PR structure initiative 2; 1.86A {Agrobacterium tumefaciens str}	Back alignment and structure

>2dcn_A Hypothetical fructokinase; 2-keto-3-deoxygluconate kinase, 2-keto- gluconate, transferase; HET: CKP ADP; 2.25A {Sulfolobus tokodaii} SCOP: c.72.1.1 PDB: 1wye_A*	Back alignment and structure

>2v78_A Fructokinase; transferase, PFKB family carbohydrate kinase, 2- keto-3-deoxygluconate kinase; 2.00A {Sulfolobus solfataricus} PDB: 2var_A*	Back alignment and structure

>3bf5_A Ribokinase related protein; 10640157, putative ribokinase, structural genomics, joint CE structural genomics, JCSG; HET: MSE; 1.91A {Thermoplasma acidophilum dsm 1728}	Back alignment and structure

>3ie7_A LIN2199 protein; phosphofructokinases, transferase, glycero ION, PSI-II, NYSGXRC, kinase, structural genomics, structure initiative; HET: ATP; 1.60A {Listeria innocua} PDB: 3hic_A* 3jul_A* 3q1y_A	Back alignment and structure

>2ajr_A Sugar kinase, PFKB family; TM0828, possible 1-phosphofructokinase (EC 2.7.1.56), struct genomics, joint center for structural genomics, JCSG; HET: MSE; 2.46A {Thermotoga maritima} SCOP: c.72.1.1	Back alignment and structure

>2qhp_A Fructokinase; NP_810670.1, PFKB family carbohydrate kinase, structural genomics, joint center for structural genomics; HET: MSE; 1.80A {Bacteroides thetaiotaomicron vpi-5482}	Back alignment and structure

>2afb_A 2-keto-3-deoxygluconate kinase; TM0067, 2-dehydro-3- deoxygluconokinase, PFKB family carbohy kinase, structural genomics; 2.05A {Thermotoga maritima} SCOP: c.72.1.1	Back alignment and structure

>2f02_A Tagatose-6-phosphate kinase; LACC, structural genomics, PSI, protein structure initiative YORK SGX research center for structural genomics; HET: ATP; 1.90A {Enterococcus faecalis} SCOP: c.72.1.1 PDB: 2awd_A*	Back alignment and structure

>3cqd_A 6-phosphofructokinase isozyme 2; phosphofructokinases, PFK-2, glycolysis, transferase; HET: ATP; 1.98A {Escherichia coli} PDB: 3n1c_A*	Back alignment and structure

>3umo_A 6-phosphofructokinase isozyme 2; glycolysis, transferase, PFK, enzyme; HET: ATP; 1.70A {Escherichia coli} PDB: 3n1c_A* 3cqd_A* 3ump_A* 3uqd_A* 3uqe_A*	Back alignment and structure

>2jg1_A Tagatose-6-phosphate kinase; phosphoryl transfer, conformational changes, transferase, lactose metabolism; HET: MSE ANP TA6; 2.00A {Staphylococcus aureus} PDB: 2jgv_A* 2q5r_A*	Back alignment and structure

>4e84_A D-beta-D-heptose 7-phosphate kinase; LPS-heptose biosynthesis, beta-clAsp dimerization region, PF carbohydrate kinase, phosphorylation; HET: MSE ANP M7B GMZ; 2.60A {Burkholderia cenocepacia} PDB: 4e8w_A* 4e8y_A* 4e8z_A*	Back alignment and structure

>2abq_A Fructose 1-phosphate kinase; dimer, structural genomics, PSI, protein structure initiative; 2.10A {Bacillus halodurans} SCOP: c.72.1.1	Back alignment and structure

>2jg5_A Fructose 1-phosphate kinase; 1-phosphofructokinase, transferase; 2.3A {Staphylococcus aureus}	Back alignment and structure

>3kd6_A Carbohydrate kinase, PFKB family; nucleoside kinase, AMP, PSI-II, NYSGXRC, struc genomics, protein structure initiative; HET: AMP; 1.88A {Chlorobaculum tepidum}	Back alignment and structure

>1vk4_A PFKB carbohydrate kinase TM0415; structural genomics, JCSG, protein structure initiative, joint center for structural G transferase; 1.91A {Thermotoga maritima} SCOP: c.72.1.1	Back alignment and structure

>2yxt_A Pyridoxal kinase; beta sheet with alpha helix, metal ION, transferase; 2.00A {Homo sapiens} PDB: 2yxu_A* 3kbi_A* 3keu_A* 4en4_A* 4eoh_A* 2f7k_A 3fhy_A* 3fhx_A* 2ajp_A* 1lhp_A 1lhr_A* 1rft_A* 1rfu_A* 1rfv_A* 1ygj_A* 1ygk_A* 1yhj_A*	Back alignment and structure

>2ddm_A Pyridoxine kinase; pyridoxal kinase, ribokinase, pyridoxal 5'-phosphate, vitamin B6, phosphorylation, transferase; 2.10A {Escherichia coli} PDB: 2ddo_A* 2ddw_A*	Back alignment and structure

>3drw_A ADP-specific phosphofructokinase; AMP, GLYC kinase, magnesium, metal-binding, transferase, structural G PSI-2, protein structure initiative; HET: AMP; 1.90A {Pyrococcus horikoshii} PDB: 1u2x_A	Back alignment and structure

>1jxh_A Phosphomethylpyrimidine kinase; THID, ribokinase family, phophorylation, transferase; 2.30A {Salmonella typhimurium} SCOP: c.72.1.2 PDB: 1jxi_A*	Back alignment and structure

>1gc5_A ADP-dependent glucokinase; ALFA/beta sandwichs, induced-fitting, transferase; HET: ADP; 2.30A {Thermococcus litoralis} SCOP: c.72.1.3	Back alignment and structure

>1ua4_A Glucokinase, ADP-dependent glucokinase; transferase; HET: GLC BGC AMP; 1.90A {Pyrococcus furiosus} SCOP: c.72.1.3	Back alignment and structure

>1l2l_A ADP-dependent glucokinase; ADP glucokinase APO, transferase; 2.00A {Pyrococcus horikoshii} SCOP: c.72.1.3	Back alignment and structure

>3mbh_A Putative phosphomethylpyrimidine kinase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE PXL; 2.00A {Bacteroides thetaiotaomicron} PDB: 3mbj_A*	Back alignment and structure

>3zs7_A Pyridoxal kinase; transferase, sleeping sickness; HET: ATP; 2.00A {Trypanosoma brucei}	Back alignment and structure

>1ub0_A THID, phosphomethylpyrimidine kinase; thiamin biosynthesis, ribokinase family, phosphorylati structural genomics; 2.05A {Thermus thermophilus} SCOP: c.72.1.2	Back alignment and structure

>1ekq_A Hydroxyethylthiazole kinase; alpha-beta, transferase; 1.50A {Bacillus subtilis} SCOP: c.72.1.2 PDB: 1ekk_A 1c3q_A 1esj_A 1esq_A*	Back alignment and structure

>2i5b_A Phosphomethylpyrimidine kinase; ADP complex, PDXK, THID, ribokinase superfamily, transferase; HET: ADP; 2.80A {Bacillus subtilis}	Back alignment and structure

>3pzs_A PM kinase, pyridoxamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; HET: MSE; 1.89A {Yersinia pestis} SCOP: c.72.1.5 PDB: 1td2_A* 1vi9_A*	Back alignment and structure

>3h74_A Pyridoxal kinase; PSI-II, structural genomics, prote structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 1.30A {Lactobacillus plantarum} PDB: 3hyo_A* 3ibq_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		343
d1bx4a_		342	c.72.1.1 (A:) Adenosine kinase {Human (Homo sapien	2e-22
d2absa1		350	c.72.1.1 (A:10-359) Adenosine kinase {Toxoplasma g	6e-19
d1tyya_		304	c.72.1.1 (A:) Aminoimidazole riboside kinase {Salm	7e-09
d2afba1		333	c.72.1.1 (A:-2-330) 2-keto-3-deoxygluconate kinase	2e-08
d2ajra1		319	c.72.1.1 (A:1-319) Putative sugar kinase TM0828 {T	2e-08
d2abqa1		306	c.72.1.1 (A:1-306) Fructose 1-phosphate kinase Fru	4e-07
d1v19a_		302	c.72.1.1 (A:) 2-keto-3-deoxygluconate kinase {Ther	8e-07
d1vk4a_		288	c.72.1.1 (A:) Hypothetical protein TM0415 {Thermot	4e-06
d2fv7a1		308	c.72.1.1 (A:15-322) Ribokinase {Human (Homo sapien	9e-06
d2dcna1		308	c.72.1.1 (A:2-309) Hypothetical fructokinase ST247	2e-05
d2f02a1		313	c.72.1.1 (A:1-313) Tagatose-6-phosphate kinase Lac	1e-04
d1vm7a_		299	c.72.1.1 (A:) Ribokinase {Thermotoga maritima [Tax	5e-04
d1rkda_		306	c.72.1.1 (A:) Ribokinase {Escherichia coli [TaxId:	0.002

>d1bx4a_ c.72.1.1 (A:) Adenosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 342	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: Ribokinase-like
family: Ribokinase-like
domain: Adenosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.4 bits (233), Expect = 2e-22
 Identities = 38/219 (17%), Positives = 75/219 (34%), Gaps = 10/219 (4%)

Query: 125 VLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSN 184
           + G+G  ++D S +VD DFL++  L+   + L   + +      +     +  AGGS  N
Sbjct: 6   LFGMGNPLLDISAVVDKDFLDKYSLKPNDQILAEDKHKELFDELVKKFKVEYHAGGSTQN 65

Query: 185 SLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDGTTGTVI 244
           S+     +  +P           G +G D  G   + K   A+V        +  TGT  
Sbjct: 66  SIKVAQWMIQQPHK----AATFFGCIGIDKFGEILKRKAAEAHVDAHYYEQNEQPTGTCA 121

Query: 245 VLTTPDAQRAMLAYQGTSSTINYD----PCLVNLISKTNIFIVEGYLFELPDTIRTITKA 300
              T D +  +      +               L+ K  +  + G+      +  ++ K 
Sbjct: 122 ACITGDNRSLIANLAAANCYKKEKHLDLEKNWMLVEKARVCYIAGFFL--TVSPESVLKV 179

Query: 301 CEVAHRSGALVAVTASDVTCIERHYDDFWYEYYMVLIVV 339
              A  +  +  +  S     + + +        V I+ 
Sbjct: 180 AHHASENNRIFTLNLSAPFISQFYKESLMKVMPYVDILF 218

PyMOL of d1bx4a_

>d2absa1 c.72.1.1 (A:10-359) Adenosine kinase {Toxoplasma gondii [TaxId: 5811]} Length = 350	Back information, alignment and structure

>d1tyya_ c.72.1.1 (A:) Aminoimidazole riboside kinase {Salmonella typhimurium [TaxId: 90371]} Length = 304	Back information, alignment and structure

>d2afba1 c.72.1.1 (A:-2-330) 2-keto-3-deoxygluconate kinase {Thermotoga maritima, TM0067 [TaxId: 2336]} Length = 333	Back information, alignment and structure

>d2ajra1 c.72.1.1 (A:1-319) Putative sugar kinase TM0828 {Thermotoga maritima [TaxId: 2336]} Length = 319	Back information, alignment and structure

>d2abqa1 c.72.1.1 (A:1-306) Fructose 1-phosphate kinase FruB {Bacillus halodurans [TaxId: 86665]} Length = 306	Back information, alignment and structure

>d1v19a_ c.72.1.1 (A:) 2-keto-3-deoxygluconate kinase {Thermus thermophilus [TaxId: 274]} Length = 302	Back information, alignment and structure

>d1vk4a_ c.72.1.1 (A:) Hypothetical protein TM0415 {Thermotoga maritima [TaxId: 2336]} Length = 288	Back information, alignment and structure

>d2fv7a1 c.72.1.1 (A:15-322) Ribokinase {Human (Homo sapiens) [TaxId: 9606]} Length = 308	Back information, alignment and structure

>d2dcna1 c.72.1.1 (A:2-309) Hypothetical fructokinase ST2478 {Sulfolobus tokodaii [TaxId: 111955]} Length = 308	Back information, alignment and structure

>d2f02a1 c.72.1.1 (A:1-313) Tagatose-6-phosphate kinase LacC {Enterococcus faecalis [TaxId: 1351]} Length = 313	Back information, alignment and structure

>d1vm7a_ c.72.1.1 (A:) Ribokinase {Thermotoga maritima [TaxId: 2336]} Length = 299	Back information, alignment and structure

>d1rkda_ c.72.1.1 (A:) Ribokinase {Escherichia coli [TaxId: 562]} Length = 306	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		343
d2absa1		350	Adenosine kinase {Toxoplasma gondii [TaxId: 5811]}	99.94
d1bx4a_		342	Adenosine kinase {Human (Homo sapiens) [TaxId: 960	99.92
d2afba1		333	2-keto-3-deoxygluconate kinase {Thermotoga maritim	99.86
d1v19a_		302	2-keto-3-deoxygluconate kinase {Thermus thermophil	99.84
d1vm7a_		299	Ribokinase {Thermotoga maritima [TaxId: 2336]}	99.81
d1tyya_		304	Aminoimidazole riboside kinase {Salmonella typhimu	99.78
d2fv7a1		308	Ribokinase {Human (Homo sapiens) [TaxId: 9606]}	99.76
d2ajra1		319	Putative sugar kinase TM0828 {Thermotoga maritima	99.71
d2f02a1		313	Tagatose-6-phosphate kinase LacC {Enterococcus fae	99.7
d1rkda_		306	Ribokinase {Escherichia coli [TaxId: 562]}	99.69
d2dcna1		308	Hypothetical fructokinase ST2478 {Sulfolobus tokod	99.69
d2abqa1		306	Fructose 1-phosphate kinase FruB {Bacillus halodur	99.65
d1vk4a_		288	Hypothetical protein TM0415 {Thermotoga maritima [	99.5
d1u2xa_		450	ADP-specific phosphofructokinase {Pyrococcus horik	95.56
d1ua4a_		454	ADP-dependent glucokinase {Archaeon Pyrococcus fur	87.42
d1l2la_		451	ADP-dependent glucokinase {Archaeon Thermococcus l	86.88
d1gc5a_		467	ADP-dependent glucokinase {Archaeon Thermococcus l	85.32

>d2absa1 c.72.1.1 (A:10-359) Adenosine kinase {Toxoplasma gondii [TaxId: 5811]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: Ribokinase-like
family: Ribokinase-like
domain: Adenosine kinase
species: Toxoplasma gondii [TaxId: 5811]

Probab=99.94  E-value=4.1e-26  Score=214.83  Aligned_cols=214  Identities=20%  Similarity=0.261  Sum_probs=177.4

Q ss_pred             CCccEEEEcCceeeeEEecChhHHHhhccccCcceecccccccceeeecccCceEEecCChHHHHHHHHHHhCCCCCCCC
Q 019265          121 ERWDVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGGP  200 (343)
Q Consensus       121 ~~~~VlviG~~~vDii~~vd~~fl~~~~L~~g~~~lv~~p~~~~~~~~i~~~~~~~~~GGsa~NvA~aLArLG~~~~~~~  200 (343)
                      .+|+|+|||+++||+++.+++.|++++++++|++++++.++ .+.+..+.....+..+||+++|+|++|++||..     
T Consensus         2 ~p~kil~iG~~~vD~~~~v~~~~l~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~GG~~~N~a~~la~L~~~-----   75 (350)
T d2absa1           2 GPMRVFAIGNPILDLVAEVPSSFLDEFFLKRGDATLATPEQ-MRIYSTLDQFNPTSLPGGSALNSVRVVQKLLRK-----   75 (350)
T ss_dssp             CCCCEEEECCCEEEEEEECCHHHHHHTTCCTTCEEECCGGG-GGGGGTGGGGCCEEEEESHHHHHHHHHHHHHCS-----
T ss_pred             CCcEEEEECCceEEEEEEeCHHHHHHcCCCCCcceecCHHH-HHHHHhhhccCceEecCcHHHHHHHHHHHhccC-----
Confidence            46899999999999999999999999999999998886543 233334444567788999999999999999431     


Q ss_pred             CCceEEEEEcCCChHHHHHHHHHHhCCCCcceeeeCCCCceEEEEEECCCCCeEEEEecCCCCCCCCchhhhhccCCceE
Q 019265          201 ALNVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDGTTGTVIVLTTPDAQRAMLAYQGTSSTINYDPCLVNLISKTNI  280 (343)
Q Consensus       201 ~~~v~lig~VG~D~~G~~I~~~L~~~GVd~~~v~~~~~~Tg~~iVlid~dGeRt~i~~~Ga~~~l~~~di~~~~i~~adi  280 (343)
                      ..+|.|+|+||+|.+|+.+++.|++.||++.++..++.+|+.++++++ +++|+++++.+++..+...+.....+...++
T Consensus        76 g~~~~~ig~vG~D~~G~~i~~~l~~~gv~~~~~~~~~~~t~~~~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (350)
T d2absa1          76 PGSAGYMGAIGDDPRGQVLKELCDKEGLATRFMVAPGQSTGVCAVLIN-EKERTLCTHLGACGSFRLPEDWTTFASGALI  154 (350)
T ss_dssp             TTSEEEEEEECSSHHHHHHHHHHHHHTCEEEEEECTTCCCEEEEEEEE-TTEEEEEEECGGGGGCCCCTTHHHHTTTCCE
T ss_pred             CccEEEEecCCCChhhHhHHHHHHhcCCcccccccccccceEEEEEee-ccCcceEeeeccccccccccccccccccccc
Confidence            117999999999999999999999999999988777788999999987 6789999998877777777777777889999


Q ss_pred             EEEcCcCCCCCchHHHHHHHHHHHHhCCCEEEEECCCcchhhhcHHHHHHhcccCcEEEeec
Q 019265          281 FIVEGYLFELPDTIRTITKACEVAHRSGALVAVTASDVTCIERHYDDFWYEYYMVLIVVLEF  342 (343)
Q Consensus       281 v~isG~~l~~p~s~~~i~~ll~~Ak~~G~~V~fD~s~~~~~~~~~e~l~elL~~vDIlf~~~  342 (343)
                      +++.++.+... .......+...++..+..+++|++.+.+.+.+.+.+..+++++||+|+|.
T Consensus       155 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~~N~  215 (350)
T d2absa1         155 FYATAYTLTAT-PKNALEVAGYAHGIPNAIFTLNLSAPFCVELYKDAMQSLLLHTNILFGNE  215 (350)
T ss_dssp             EEEEGGGGTTC-HHHHHHHHHHHHTSTTCEEEEECCCHHHHHHCHHHHHHHHHTCSEEEEEH
T ss_pred             ccceeeeeccc-cchhHHHHHHhhhhccceEEEecchhhhhhhhhcchhhhcccCCEEEecH
Confidence            99998865432 34455556666777899999999987777777888899999999999984

PyMOL of d2absa1

>d1bx4a_ c.72.1.1 (A:) Adenosine kinase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1v19a_ c.72.1.1 (A:) 2-keto-3-deoxygluconate kinase {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1vm7a_ c.72.1.1 (A:) Ribokinase {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1tyya_ c.72.1.1 (A:) Aminoimidazole riboside kinase {Salmonella typhimurium [TaxId: 90371]}	Back information, alignment and structure

>d2fv7a1 c.72.1.1 (A:15-322) Ribokinase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ajra1 c.72.1.1 (A:1-319) Putative sugar kinase TM0828 {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d2f02a1 c.72.1.1 (A:1-313) Tagatose-6-phosphate kinase LacC {Enterococcus faecalis [TaxId: 1351]}	Back information, alignment and structure

>d1rkda_ c.72.1.1 (A:) Ribokinase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2dcna1 c.72.1.1 (A:2-309) Hypothetical fructokinase ST2478 {Sulfolobus tokodaii [TaxId: 111955]}	Back information, alignment and structure

>d2abqa1 c.72.1.1 (A:1-306) Fructose 1-phosphate kinase FruB {Bacillus halodurans [TaxId: 86665]}	Back information, alignment and structure

>d1vk4a_ c.72.1.1 (A:) Hypothetical protein TM0415 {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1u2xa_ c.72.1.3 (A:) ADP-specific phosphofructokinase {Pyrococcus horikoshii [TaxId: 53953]}	Back information, alignment and structure

>d1ua4a_ c.72.1.3 (A:) ADP-dependent glucokinase {Archaeon Pyrococcus furiosus [TaxId: 2261]}	Back information, alignment and structure

>d1l2la_ c.72.1.3 (A:) ADP-dependent glucokinase {Archaeon Thermococcus litoralis [TaxId: 2265]}	Back information, alignment and structure

>d1gc5a_ c.72.1.3 (A:) ADP-dependent glucokinase {Archaeon Thermococcus litoralis [TaxId: 2265]}	Back information, alignment and structure