Citrus Sinensis ID: 019269

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340---
Protein Sequence
MVLHSVLGDWGLTNKVGFIEEETDGCMPFLFFSFSPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLRVTVVSRGPDTELLVANPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLMGWE
Secondary Structure (PSIPRED)
cccccccccccHHHHHHccccccccccccEEEccccccccEEEEEEEEcccccHHHHHHHHHHHcccEEEEEEEEEccccEEEEEEEEEccccccccHHHHHHHHHHHHHHHHccccccccccccccEEccccccccccHHHHHHHccccccccccccccccccEEEEccccccccEEEEEEEccccHHHHHHHHHHHHccEEEEEEEEEEcccccEEEEEEEEEccccccccHHHHHHHHHHHHHHHccccEEEEEcccccccccccccEEEEcccccccHHHHHHHHHHccEEEEEEEEEEEEcccEEEEEEEEEEcccccccccHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cEEEEEEccccHHHHHHHHcccccccccccccccccccccEEEEEEEccccccHHHHHHHHHHHcccEEEEEEEEEccccEEEEEEEEEccccccccHHHHHHHHHHHHHHHccccccccEccccccHcHHcccccccHHHHHHHHccccccccccccccccccEEEEEcccccccEEEEEEEcccccHHHHHHHHHHHccEEEEEEEEEEcccccEEEEEEEEEccccEcccHHHHHHHHHHHHHHHHcccEEEEEEcccccEEEEEccEEEcccccccHHHHHHHHHHHcccEEEEEEEEEEEccccEEEEEEEEEcccccccccHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
mvlhsvlgdwgltnkvgfieeetdgcmpflffsfspkpsdvfLLKLscydrkgllYDVTAVLCELELTIEKVKisttpdgkvmdLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMISCDVEMVGTEITacsqassflpSAIIDMLhldmpvelpsgsltcsnvsvtidnslspghtLVQIVCQDHKGLLYDIMRTLKDYNIqvsygrfsrrqrgnceidlfimqadgkkivdpskqnglssRLWMELLQPLRVTvvsrgpdtellvanpvelsgkgrplvFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDegdglsvprnkIEEGVWKLLMGWE
Flexible Loop (DISEMBL)
mvlhsvlgdwgltnKVGFIEEETDGCMPFLFFSFSPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEkvkisttpdgkvmdlFFVTDTrellhtrkrkedtyeHLKTILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSygrfsrrqrgnCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLRVTVVSRGPDTELLVAnpvelsgkgrpLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLdegdglsvprnkieegVWKLLMGWE
Low Complexity Region (SEG)
MVLHSVLGDWGLTNKVGFIEEETDGCMpflffsfspkpsDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLRVTVVSRGPDTELLVANPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLMGWE
Disordered region (IsUnstruct)
**LHSVLGDWGLTNKVGFIEEETDGCMPFLFFSFSPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVD****NGLSSRLWMELLQPLRVTVVSRGPDTELLVANPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLMGW*
Disordered Region (DISOPRED)
****SVLGDWGLTNKVGFIEEETDGCMPFLFFSFSPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMISCD***************************************TCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLRV**********LLVANPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDG******KIEEGVWKLLMGW*
Disordered Region (DISEMBL)
MVLHSVLGDWGLTNKVGFIEEETDGCMPFLFFSFSPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLRVTVVSRGPDTELLVANPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLMGWE
Disordered Region (DISPRO)
MVLHSVLGDWGLTNKVGFIEEETDGCMPFLFFSFSPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLD************SNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLRVTVVSRGPDTELLVANPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLMGWE
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVLHSVLGDWGLTNKVGFIEEETDGCMPFLFFSFSPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLRVTVVSRGPDTELLVANPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLMGWE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	343	2.2.26 [Sep-21-2011]
Q5FPT6	949	[Protein-PII] uridylyltra	yes	no	0.521	0.188	0.225	3e-05
Q2RNG2	936	[Protein-PII] uridylyltra	yes	no	0.472	0.173	0.260	6e-05
Q8RQD1	933	[Protein-PII] uridylyltra	yes	no	0.244	0.090	0.333	7e-05
Q9AC53	940	[Protein-PII] uridylyltra	yes	no	0.460	0.168	0.246	0.0004
B8GWX0	940	[Protein-PII] uridylyltra	yes	no	0.460	0.168	0.246	0.0004
Q9RAE4	944	[Protein-PII] uridylyltra	N/A	no	0.137	0.049	0.458	0.0006
B4RC79	938	[Protein-PII] uridylyltra	yes	no	0.469	0.171	0.229	0.0008
Q8UIF1	942	[Protein-PII] uridylyltra	yes	no	0.137	0.049	0.458	0.0008

>sp|Q5FPT6|GLND_GLUOX [Protein-PII] uridylyltransferase OS=Gluconobacter oxydans (strain 621H) GN=glnD PE=3 SV=1

 Score = 49.7 bits (117), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 78/208 (37%), Gaps = 29/208 (13%)

Query: 44  LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKED 103
           L + C D  GL   +   L     +I   +I T  DG  +D F+V D          +  
Sbjct: 758 LTVLCADHPGLFSQIAGALAVSGASIVDARIHTLSDGMALDTFWVQDGEGCSFEEPHQLG 817

Query: 104 TYEHL--KTILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTC 161
              HL  + + G   I   +E      T+    +  +P  ++                  
Sbjct: 818 RLNHLVEQALSGRLDIRKGIEDASHHSTSRRMRAIHVPPRVV------------------ 859

Query: 162 SNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDL 221
                 IDN+ S  HT++++  +D  GLL+D+   L   ++Q+S    +    G   +D+
Sbjct: 860 ------IDNTASDRHTVIEVNGRDRPGLLHDVTSALSSASLQISSAHIT--TYGMRAVDV 911

Query: 222 F-IMQADGKKIVDPSKQNGLSSRLWMEL 248
           F +    G KI DP +   L   L   L
Sbjct: 912 FYVRDLLGMKITDPVRLARLRETLLASL 939

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.
Gluconobacter oxydans (strain 621H) (taxid: 290633)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 5EC: 9

>sp|Q2RNG2|GLND_RHORT [Protein-PII] uridylyltransferase OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=glnD PE=3 SV=1

 Score = 48.9 bits (115), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 78/188 (41%), Gaps = 26/188 (13%)

Query: 50  DRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLK 109
           D  GL   +   +    + I   KI+T  DG  +D+F V       H  +++E      K
Sbjct: 735 DHPGLFSKIAGAMALAGVNILDAKITTMSDGGALDIFTVQTLEG--HAIEKEERIARLAK 792

Query: 110 TILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTID 169
           T+    +++ D+ +      A  +    LP       HL +P              V +D
Sbjct: 793 TV--RDVLTGDLPLE----KALRRQPPRLPERT---RHLTVPPR------------VIVD 831

Query: 170 NSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADG 228
           N  S  HT+++I  +D  G LY + R L D  +Q+S  R S    G   +D F ++   G
Sbjct: 832 NQASKTHTVIEINGRDRPGFLYAVTRALTDVAVQISSARVS--TYGERVVDSFYVKDVFG 889

Query: 229 KKIVDPSK 236
            KIV  +K
Sbjct: 890 MKIVHRAK 897

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) (taxid: 269796)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q8RQD1|GLND_AZOBR [Protein-PII] uridylyltransferase OS=Azospirillum brasilense GN=glnD PE=3 SV=1

 Score = 48.5 bits (114), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 3/87 (3%)

Query: 166 VTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ 225
           V IDN+ S  HT++++  +D  GLLYD+ R L +  +Q+S  + S    G   ID+F ++
Sbjct: 847 VLIDNNASTTHTVIEVNGRDRPGLLYDLTRALTNLTLQISSAKIS--TYGEKAIDVFYVK 904

Query: 226 -ADGKKIVDPSKQNGLSSRLWMELLQP 251
              G K+   +K   +  RL   L  P
Sbjct: 905 DVFGLKVTHENKLAQIRERLLHALADP 931

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Azospirillum brasilense (taxid: 192)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q9AC53|GLND_CAUCR [Protein-PII] uridylyltransferase OS=Caulobacter crescentus (strain ATCC 19089 / CB15) GN=glnD PE=3 SV=1

 Score = 45.8 bits (107), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 82/199 (41%), Gaps = 41/199 (20%)

Query: 46  LSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTR------ELLHTRK 99
           ++  DR+GL  D+   +  L   +   ++ T+  G+ +D+F+V D        E     +
Sbjct: 740 IAAKDRRGLFADLALAISSLGGNVVGARVFTSRQGQALDVFYVQDVTGAPFGCENPRALR 799

Query: 100 RKEDTYEHLKTILGNAMISCDVE-MVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGS 158
           R  D  E      G+A+    VE   G+E T   +A++F  +                  
Sbjct: 800 RLADALEAAGK--GDALA---VEPRRGSEQT---RAAAFAIAP----------------- 834

Query: 159 LTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCE 218
                 SVTIDN  S   T+V+   +D  GLL+ + +TL D  + +          G   
Sbjct: 835 ------SVTIDNDASNDATVVEASGRDRPGLLHALAKTLADSALSIQSAHID--GYGERA 886

Query: 219 IDLFIMQ-ADGKKIVDPSK 236
           +D F +Q  +G K+ D  K
Sbjct: 887 VDAFYVQTTEGGKVTDTRK 905

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Caulobacter crescentus (strain ATCC 19089 / CB15) (taxid: 190650)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|B8GWX0|GLND_CAUCN [Protein-PII] uridylyltransferase OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=glnD PE=3 SV=1

 Score = 45.8 bits (107), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 82/199 (41%), Gaps = 41/199 (20%)

Query: 46  LSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTR------ELLHTRK 99
           ++  DR+GL  D+   +  L   +   ++ T+  G+ +D+F+V D        E     +
Sbjct: 740 IAAKDRRGLFADLALAISSLGGNVVGARVFTSRQGQALDVFYVQDVTGAPFGCENPRALR 799

Query: 100 RKEDTYEHLKTILGNAMISCDVE-MVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGS 158
           R  D  E      G+A+    VE   G+E T   +A++F  +                  
Sbjct: 800 RLADALEAAGK--GDALA---VEPRRGSEQT---RAAAFAIAP----------------- 834

Query: 159 LTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCE 218
                 SVTIDN  S   T+V+   +D  GLL+ + +TL D  + +          G   
Sbjct: 835 ------SVTIDNDASNDATVVEASGRDRPGLLHALAKTLADSALSIQSAHID--GYGERA 886

Query: 219 IDLFIMQ-ADGKKIVDPSK 236
           +D F +Q  +G K+ D  K
Sbjct: 887 VDAFYVQTTEGGKVTDTRK 905

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Caulobacter crescentus (strain NA1000 / CB15N) (taxid: 565050)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q9RAE4|GLND_RHILV [Protein-PII] uridylyltransferase OS=Rhizobium leguminosarum bv. viciae GN=glnD PE=3 SV=2

 Score = 45.4 bits (106), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 35/48 (72%), Gaps = 1/48 (2%)

Query: 43  LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTD 90
           ++++ C DR GLL ++TAVL +L L I+  +I+T  + KV+D F+VTD
Sbjct: 839 VIEVECLDRPGLLSEITAVLSDLSLDIQSARITTFGE-KVIDTFYVTD 885

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Rhizobium leguminosarum bv. viciae (taxid: 387)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|B4RC79|GLND_PHEZH [Protein-PII] uridylyltransferase OS=Phenylobacterium zucineum (strain HLK1) GN=glnD PE=3 SV=1

 Score = 45.1 bits (105), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 44/192 (22%), Positives = 73/192 (38%), Gaps = 31/192 (16%)

Query: 50  DRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLK 109
           DR  L  D+   +      +   ++ T+  G+ +D+F+V D                   
Sbjct: 741 DRPRLFVDLAEAITAAGANVMGARVFTSRAGQALDVFYVQDAS----------------- 783

Query: 110 TILGNAMISCDVEMVG--TEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVT 167
              G    S D   +    E  AC  A+   P A         P +L   +      +V 
Sbjct: 784 ---GQPFGSHDPRALARLAETLAC--AARGEPVA----REPRKPQDLGRTAAFAITPAVM 834

Query: 168 IDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLF-IMQA 226
           +DN  S   T+V+   +D  GLL  + RT+ D  + +          G   +D F ++ A
Sbjct: 835 LDNEASETSTVVEASGRDRPGLLAALARTISDAGLSILSAHID--GYGERAVDAFYVVDA 892

Query: 227 DGKKIVDPSKQN 238
           DG+K+ D  K+N
Sbjct: 893 DGRKLTDARKRN 904

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Phenylobacterium zucineum (strain HLK1) (taxid: 450851)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q8UIF1|GLND_AGRT5 [Protein-PII] uridylyltransferase OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=glnD PE=3 SV=1

 Score = 45.1 bits (105), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 34/48 (70%), Gaps = 1/48 (2%)

Query: 43  LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTD 90
           ++++ C DR GLL D+TAV+ +L L I   +I+T  + KV+D F+VTD
Sbjct: 841 VIEVECLDRPGLLADMTAVIADLSLDIHSARITTFGE-KVIDTFYVTD 887

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Agrobacterium tumefaciens (strain C58 / ATCC 33970) (taxid: 176299)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	343
356533259	411	PREDICTED: uncharacterized protein LOC10	0.895	0.746	0.781	1e-139
225441177	411	PREDICTED: uncharacterized protein LOC10	0.918	0.766	0.770	1e-139
356572480	412	PREDICTED: uncharacterized protein LOC10	0.897	0.747	0.776	1e-138
147817636	465	hypothetical protein VITISV_004035 [Viti	0.918	0.677	0.742	1e-136
356548347	412	PREDICTED: uncharacterized protein LOC10	0.895	0.745	0.769	1e-136
224117840	412	predicted protein [Populus trichocarpa]	0.895	0.745	0.783	1e-136
255556900	409	amino acid binding protein, putative [Ri	0.886	0.743	0.779	1e-133
224056635	413	predicted protein [Populus trichocarpa]	0.965	0.801	0.721	1e-132
224105273	411	predicted protein [Populus trichocarpa]	0.892	0.744	0.763	1e-131
357510825	405	hypothetical protein MTR_7g102330 [Medic	0.877	0.743	0.745	1e-128

>gi|356533259|ref|XP_003535183.1| PREDICTED: uncharacterized protein LOC100789465 [Glycine max]

 Score =  502 bits (1292), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 240/307 (78%), Positives = 276/307 (89%)

Query: 37  KPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLH 96
           KPSDVFLL  SC+DRKGLL+DVT VLCELELTI+KVK+STTPDGKVMDLFF+TDTRELLH
Sbjct: 105 KPSDVFLLNFSCHDRKGLLHDVTEVLCELELTIKKVKVSTTPDGKVMDLFFITDTRELLH 164

Query: 97  TRKRKEDTYEHLKTILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPS 156
           T+KRK++T EHL  I+G+A+IS D+E+VG EITACS+A  FLP+AI D+  L++P     
Sbjct: 165 TKKRKDETIEHLTEIMGDAIISIDIELVGPEITACSKAPPFLPTAITDIFDLELPDLARG 224

Query: 157 GSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGN 216
           G+L    VS+T+DN LSP HTLVQI+CQDHKGLLYDIMRTLKDYNIQ+SYGRF+ + RG 
Sbjct: 225 GTLRSDYVSITMDNLLSPAHTLVQIMCQDHKGLLYDIMRTLKDYNIQISYGRFTTKPRGK 284

Query: 217 CEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLRVTVVSRGPDTELLVANPVELSGK 276
           CEIDLFIMQADGKKIVDP+KQN LSSRL MELL+PLRV +VSRGPDTELLV+NPVELSGK
Sbjct: 285 CEIDLFIMQADGKKIVDPNKQNSLSSRLRMELLRPLRVAIVSRGPDTELLVSNPVELSGK 344

Query: 277 GRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVW 336
           GRPLVF+DITLALKMLD CIFSA+IGRH+IGDREWEVYR+LLDEG+GLSVPRNK+EEGVW
Sbjct: 345 GRPLVFYDITLALKMLDTCIFSAKIGRHLIGDREWEVYRILLDEGEGLSVPRNKVEEGVW 404

Query: 337 KLLMGWE 343
           K+LMGWE
Sbjct: 405 KMLMGWE 411

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225441177|ref|XP_002268949.1| PREDICTED: uncharacterized protein LOC100265834 [Vitis vinifera] gi|297739971|emb|CBI30153.3| unnamed protein product [Vitis vinifera]

 Score =  500 bits (1287), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 245/318 (77%), Positives = 275/318 (86%), Gaps = 3/318 (0%)

Query: 29  FLFFSFSP-KPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFF 87
           F +F   P KP DVFLLK  CYDRKGLL+DVT VLCELELTI+KVK+STTPDG+VMDLFF
Sbjct: 94  FSYFQLQPPKPPDVFLLKFCCYDRKGLLHDVTEVLCELELTIKKVKVSTTPDGRVMDLFF 153

Query: 88  VTDTRELLHTRKRKEDTYEHLKTILGNAMISCDVEMVGTEITACSQASSFLPSAII-DML 146
           +TDTRELLHT+KR+EDT+ HLKT+LG+AMISCD+ MVG+EITACSQ S+ LPSAI  ++ 
Sbjct: 154 ITDTRELLHTKKRQEDTHNHLKTVLGDAMISCDISMVGSEITACSQTSTLLPSAITREIF 213

Query: 147 HLDMPVELPSGSLTCS-NVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVS 205
                 E PSG    S N+SVT+DNSLSP HTLVQIVCQDHKGLLYD+MRTLKDYNI++S
Sbjct: 214 GSKFEDEPPSGLPQVSGNISVTMDNSLSPAHTLVQIVCQDHKGLLYDMMRTLKDYNIKIS 273

Query: 206 YGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLRVTVVSRGPDTEL 265
           YGR + + R NCE+DLFIMQADGKK+VDP KQN L SRL MELL+PLRV VVSRGPDTEL
Sbjct: 274 YGRLTTKPRRNCEVDLFIMQADGKKVVDPYKQNALCSRLQMELLRPLRVAVVSRGPDTEL 333

Query: 266 LVANPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLS 325
           LVANPVELSGKGRPLVF DIT ALKML++CIFSAEIGR MI DREWEVYR+LLDEGDGL 
Sbjct: 334 LVANPVELSGKGRPLVFFDITHALKMLNVCIFSAEIGRQMIADREWEVYRILLDEGDGLL 393

Query: 326 VPRNKIEEGVWKLLMGWE 343
           VPRNKIEEGVWK+LMGWE
Sbjct: 394 VPRNKIEEGVWKMLMGWE 411

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572480|ref|XP_003554396.1| PREDICTED: uncharacterized protein LOC100818216 [Glycine max]

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 240/309 (77%), Positives = 274/309 (88%), Gaps = 1/309 (0%)

Query: 36  PKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELL 95
           PKP DVFLLK  C+DRKGLL+DVT VL ELEL I KVK+STTPDGKV+DLFF+TDTRELL
Sbjct: 104 PKPPDVFLLKFCCHDRKGLLHDVTEVLSELELIIHKVKVSTTPDGKVVDLFFITDTRELL 163

Query: 96  HTRKRKEDTYEHLKTILGNAMISCDVEMVGTEITACSQASSFLPSAII-DMLHLDMPVEL 154
           HT+KR++DT E L  ILG+ +I+ D+E+VG EI ACSQASSFLPSA+  DM  L++P  +
Sbjct: 164 HTKKRRDDTIEQLSAILGDPLITIDIELVGPEIAACSQASSFLPSAMTEDMFDLELPGSI 223

Query: 155 PSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQR 214
            SG+ T  +VS+T+DNSLSP HTLVQI+CQDHKGLLYDIMRTLKDYNIQ+SYGRFS + R
Sbjct: 224 QSGTSTSDSVSITMDNSLSPAHTLVQIICQDHKGLLYDIMRTLKDYNIQISYGRFSTKPR 283

Query: 215 GNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLRVTVVSRGPDTELLVANPVELS 274
           G CE+DLFIMQADGKKIV+PSKQ  LSSRL MELL+PLRVTVVSRGPDTELLVANPVELS
Sbjct: 284 GKCELDLFIMQADGKKIVNPSKQKSLSSRLRMELLRPLRVTVVSRGPDTELLVANPVELS 343

Query: 275 GKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEG 334
           GKGRPLVF+DIT ALKML  CIFSAE+GRH++GDREWEVYR+LLDEGDGLSVPRNKIE+G
Sbjct: 344 GKGRPLVFYDITHALKMLGPCIFSAEVGRHVVGDREWEVYRILLDEGDGLSVPRNKIEKG 403

Query: 335 VWKLLMGWE 343
           VWK+LMGWE
Sbjct: 404 VWKMLMGWE 412

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147817636|emb|CAN64495.1| hypothetical protein VITISV_004035 [Vitis vinifera]

 Score =  491 bits (1265), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 245/330 (74%), Positives = 275/330 (83%), Gaps = 15/330 (4%)

Query: 29  FLFFSFSP-KPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFF 87
           F +F   P KP DVFLLK  CYDRKGLL+DVT VLCELELTI+KVK+STTPDG+VMDLFF
Sbjct: 136 FSYFQLQPPKPPDVFLLKFCCYDRKGLLHDVTEVLCELELTIKKVKVSTTPDGRVMDLFF 195

Query: 88  VTDTRELLHTRKRKEDTYEHLKTILGNAMISCDVEMVGTEITACSQASSFLPSAII-DML 146
           +TDTRELLHT+KR+EDT+ HLKT+LG+AMISCD+ MVG+EITACSQ S+ LPSAI  ++ 
Sbjct: 196 ITDTRELLHTKKRQEDTHNHLKTVLGDAMISCDISMVGSEITACSQTSTLLPSAITREIF 255

Query: 147 HLDMPVELPSGSLTCS-NVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVS 205
                 E PSG    S N+SVT+DNSLSP HTLVQIVCQDHKGLLYD+MRTLKDYNI++S
Sbjct: 256 GSKFEDEPPSGLPQVSGNISVTMDNSLSPAHTLVQIVCQDHKGLLYDMMRTLKDYNIKIS 315

Query: 206 YGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLRVTVVSRGPDTEL 265
           YGR + + R NCE+DLFIMQADGKK+VDP KQN L SRL MELL+PLRV VVSRGPDTEL
Sbjct: 316 YGRLTTKPRRNCEVDLFIMQADGKKVVDPYKQNALCSRLQMELLRPLRVAVVSRGPDTEL 375

Query: 266 LVANPVELSGKGRPLVFHDITLALKMLDICIFS------------AEIGRHMIGDREWEV 313
           LVANPVELSGKGRPLVF DIT ALKML++CIFS            AEIGR MI DREWEV
Sbjct: 376 LVANPVELSGKGRPLVFFDITHALKMLNVCIFSVLLYAPIIRVRWAEIGRQMIADREWEV 435

Query: 314 YRVLLDEGDGLSVPRNKIEEGVWKLLMGWE 343
           YR+LLDEGDGL VPRNKIEEGVWK+LMGWE
Sbjct: 436 YRILLDEGDGLLVPRNKIEEGVWKMLMGWE 465

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548347|ref|XP_003542564.1| PREDICTED: uncharacterized protein LOC100816138 [Glycine max]

 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 237/308 (76%), Positives = 274/308 (88%), Gaps = 1/308 (0%)

Query: 37  KPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLH 96
           KPSDVFLL   C+DRKGLL+DVT VLCELELTI+KVK+STTPDGKV+DLFF+TDTRELLH
Sbjct: 105 KPSDVFLLNFCCHDRKGLLHDVTEVLCELELTIKKVKVSTTPDGKVIDLFFITDTRELLH 164

Query: 97  TRKRKEDTYEHLKTILGNAMISCDVEMVGTEITACSQASSFLPSAII-DMLHLDMPVELP 155
           T+KRK++T E+L  I+G+A+IS D+E+VG EITACSQA  FLP+AI  D+  L++P    
Sbjct: 165 TKKRKDETIEYLTEIMGDAIISIDIELVGPEITACSQAPPFLPTAITEDVFDLELPDLAR 224

Query: 156 SGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRG 215
            G+L    VS+T+DN LSP HTLVQI+CQDHKGLLYDIMRTLKDYNIQ+SYGRF+ + RG
Sbjct: 225 GGTLRSDYVSITMDNLLSPAHTLVQIMCQDHKGLLYDIMRTLKDYNIQISYGRFTAKPRG 284

Query: 216 NCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLRVTVVSRGPDTELLVANPVELSG 275
            CEIDLFIMQADGKKIVDP+KQN LSSRL MELL+PLRV +VSRGPDTELLV+NPVELSG
Sbjct: 285 KCEIDLFIMQADGKKIVDPNKQNSLSSRLRMELLRPLRVAIVSRGPDTELLVSNPVELSG 344

Query: 276 KGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGV 335
           KGRPLVF+DITLALKMLD CIF A+IGRH+IGDREWEVYR+LLDEG+GLSVPRNK+EEGV
Sbjct: 345 KGRPLVFYDITLALKMLDTCIFLAKIGRHLIGDREWEVYRILLDEGEGLSVPRNKVEEGV 404

Query: 336 WKLLMGWE 343
           WK+LMGWE
Sbjct: 405 WKMLMGWE 412

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224117840|ref|XP_002317681.1| predicted protein [Populus trichocarpa] gi|222860746|gb|EEE98293.1| predicted protein [Populus trichocarpa]

 Score =  489 bits (1260), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 242/309 (78%), Positives = 272/309 (88%), Gaps = 2/309 (0%)

Query: 36  PKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELL 95
           P+P DVFLLKL+C+DRKGLL+DVT VLCELELTI+KVK+STTPDG+VMDLFFVTDTRELL
Sbjct: 104 PRPPDVFLLKLACHDRKGLLHDVTGVLCELELTIKKVKVSTTPDGRVMDLFFVTDTRELL 163

Query: 96  HTRKRKEDTYEHLKTILGNAMISCDVEMVGTEITACSQASSFLPSAII-DMLHLDMPVEL 154
           HT KRKEDTY+HL+ ++GN+MISCD+EMVG EITACS  SSFLP+AI  ++L L MP EL
Sbjct: 164 HTNKRKEDTYDHLRAVMGNSMISCDIEMVGPEITACSAESSFLPTAITENILPLQMPDEL 223

Query: 155 PSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQR 214
           PS   + S   + +DN LSP HTLVQIVCQDHKGLLYDIMRTLKDYNIQ+SYGRF  + R
Sbjct: 224 PSSLTSTSVSVI-MDNLLSPAHTLVQIVCQDHKGLLYDIMRTLKDYNIQISYGRFYIKHR 282

Query: 215 GNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLRVTVVSRGPDTELLVANPVELS 274
             CEIDLFIMQADGKKIVDP+KQ  LSSRL MEL++PLRV VVSRGPDTEL+VANPVELS
Sbjct: 283 RTCEIDLFIMQADGKKIVDPNKQKALSSRLEMELVRPLRVAVVSRGPDTELMVANPVELS 342

Query: 275 GKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEG 334
           GKGRPLVFHDITLAL ML+ CIFSAEI R MIGDRE+EVYRVLLDEG+GL+VPR KIEE 
Sbjct: 343 GKGRPLVFHDITLALTMLNSCIFSAEIRRRMIGDREFEVYRVLLDEGEGLAVPRRKIEEQ 402

Query: 335 VWKLLMGWE 343
           VWK+LMGWE
Sbjct: 403 VWKMLMGWE 411

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556900|ref|XP_002519483.1| amino acid binding protein, putative [Ricinus communis] gi|223541346|gb|EEF42897.1| amino acid binding protein, putative [Ricinus communis]

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 241/309 (77%), Positives = 269/309 (87%), Gaps = 5/309 (1%)

Query: 36  PKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELL 95
           P+P DVFLLKL C+DR+GLL++VT VLCELELTI KVK+STTPDG+VMDLFFVTDTRELL
Sbjct: 105 PRPPDVFLLKLCCHDRRGLLHNVTEVLCELELTIRKVKVSTTPDGRVMDLFFVTDTRELL 164

Query: 96  HTRKRKEDTYEHLKTILGNAMISCDVEMVGTEITACSQASSFLPSAII-DMLHLDMPVEL 154
           HT KRKE+TY  LK+++G+ MISCD+EMVG EITACS  SS LP+ I  DMLH     E+
Sbjct: 165 HTNKRKEETYGQLKSVIGDGMISCDIEMVGPEITACSLESSSLPTTITEDMLHW----EV 220

Query: 155 PSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQR 214
           P GSLT  +VSVT+DNSLSPGHTLVQI CQDHKGLLYDIMRTLKDYNI++SYGRFS +QR
Sbjct: 221 PPGSLTSISVSVTMDNSLSPGHTLVQIACQDHKGLLYDIMRTLKDYNIKISYGRFSIKQR 280

Query: 215 GNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLRVTVVSRGPDTELLVANPVELS 274
            NCEIDLFI+QADGKKIVDPSKQ  L SRL MELL+PLRV VVSRGPD ELLVANPVELS
Sbjct: 281 RNCEIDLFIVQADGKKIVDPSKQGALCSRLEMELLRPLRVAVVSRGPDIELLVANPVELS 340

Query: 275 GKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEG 334
           G GRPLVFHDITLALKML   IFSAEI R MIGDRE+EVYRVLLDEG+GLSVPR+KI+E 
Sbjct: 341 GNGRPLVFHDITLALKMLSTGIFSAEIRRCMIGDREYEVYRVLLDEGEGLSVPRSKIQER 400

Query: 335 VWKLLMGWE 343
           VW +LMGW+
Sbjct: 401 VWNMLMGWD 409

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224056635|ref|XP_002298947.1| predicted protein [Populus trichocarpa] gi|222846205|gb|EEE83752.1| predicted protein [Populus trichocarpa]

 Score =  477 bits (1227), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 246/341 (72%), Positives = 282/341 (82%), Gaps = 10/341 (2%)

Query: 10  WGLTNKVGFIEEETDGCMPFLFFSF------SPKPSDVFLLKLSCYDRKGLLYDVTAVLC 63
           WGL  K   + E    C      SF       P+P DVFLLKLSC DR+GLL+DVT+VLC
Sbjct: 75  WGLLKK--RLVEACPSCSSASGLSFYRSELQPPRPPDVFLLKLSCQDRRGLLHDVTSVLC 132

Query: 64  ELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMISCDVEM 123
           ELELTI+KVK+STTPDG+V+DLFF+TD RELLHT KRKEDT +HLK + GN+MISCD+E+
Sbjct: 133 ELELTIKKVKVSTTPDGRVIDLFFITDNRELLHTNKRKEDTCDHLKAVTGNSMISCDIEI 192

Query: 124 VGTEITACSQASSFLPSAII-DMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIV 182
           VG EITACS  SSFLP+AI  ++L L+MP ELPS   + ++VSV +DNSLSPGHTLVQIV
Sbjct: 193 VGPEITACSAESSFLPTAITENILPLEMPDELPSSLTS-TSVSVNMDNSLSPGHTLVQIV 251

Query: 183 CQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSS 242
           CQDHKGLLYDIMRTLKDYNIQ+SYGRFS      C+IDLF++Q DGKKIVDP KQ  LSS
Sbjct: 252 CQDHKGLLYDIMRTLKDYNIQISYGRFSMNHGRACDIDLFLVQTDGKKIVDPRKQKALSS 311

Query: 243 RLWMELLQPLRVTVVSRGPDTELLVANPVELSGKGRPLVFHDITLALKMLDICIFSAEIG 302
           RL MEL++PLRV  VSRGPDTELLVANPVELSGKGRPLVFHDITLALKML+ CIFSAEI 
Sbjct: 312 RLEMELVRPLRVATVSRGPDTELLVANPVELSGKGRPLVFHDITLALKMLNTCIFSAEIR 371

Query: 303 RHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLMGWE 343
           R MIGDRE+EVYRVLLDEG+GL+VPR+KIE+ VWK+LMGWE
Sbjct: 372 RRMIGDREFEVYRVLLDEGEGLAVPRSKIEKQVWKMLMGWE 412

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105273|ref|XP_002333837.1| predicted protein [Populus trichocarpa] gi|222838705|gb|EEE77070.1| predicted protein [Populus trichocarpa]

 Score =  473 bits (1216), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 236/309 (76%), Positives = 267/309 (86%), Gaps = 3/309 (0%)

Query: 36  PKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELL 95
           P+P DVFLLKL+C+DRKGLL+DVT VLCELELTI+KVK+STTPDG+VMDLFFVTDT   +
Sbjct: 104 PRPPDVFLLKLACHDRKGLLHDVTGVLCELELTIKKVKVSTTPDGRVMDLFFVTDTSSCI 163

Query: 96  HTRKRKEDTYEHLKTILGNAMISCDVEMVGTEITACSQASSFLPSAII-DMLHLDMPVEL 154
              KRKEDTY+HL+ ++GN+MISCD+EMVG EITACS  SSFLP+AI  ++L L MP EL
Sbjct: 164 -XNKRKEDTYDHLRAVMGNSMISCDIEMVGPEITACSAESSFLPTAITENILPLQMPDEL 222

Query: 155 PSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQR 214
           PS   + S   + +DN LSP HTLVQIVCQDHKGLLYDIMRTLKDYNIQ+SYGRF  + R
Sbjct: 223 PSSLTSTSVSVI-MDNLLSPAHTLVQIVCQDHKGLLYDIMRTLKDYNIQISYGRFYIKHR 281

Query: 215 GNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLRVTVVSRGPDTELLVANPVELS 274
             CEIDLFIMQADGKKIVDP+KQ  LSSRL MEL++PLRV VVSRGPDTEL+VANPVELS
Sbjct: 282 RTCEIDLFIMQADGKKIVDPNKQKALSSRLEMELVRPLRVAVVSRGPDTELMVANPVELS 341

Query: 275 GKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEG 334
           GKGRPLVFHDITLAL ML+ CIFSAEI R MIGDRE+EVYRVLLDEG+GL+VPR KIEE 
Sbjct: 342 GKGRPLVFHDITLALTMLNSCIFSAEIRRRMIGDREFEVYRVLLDEGEGLAVPRRKIEEQ 401

Query: 335 VWKLLMGWE 343
           VWK+LMGWE
Sbjct: 402 VWKMLMGWE 410

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357510825|ref|XP_003625701.1| hypothetical protein MTR_7g102330 [Medicago truncatula] gi|355500716|gb|AES81919.1| hypothetical protein MTR_7g102330 [Medicago truncatula]

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 229/307 (74%), Positives = 262/307 (85%), Gaps = 6/307 (1%)

Query: 37  KPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLH 96
           KP DVFLLK  C DRKGLL+DVT VLCELELTI+KVK+STTPDGKV+DLFF+TDTRELLH
Sbjct: 105 KPPDVFLLKFCCKDRKGLLHDVTEVLCELELTIKKVKVSTTPDGKVLDLFFITDTRELLH 164

Query: 97  TRKRKEDTYEHLKTILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPS 156
           T KRK+DT E L T+L +   + D+E+VG E TA SQ SS LP+AI D+       +L S
Sbjct: 165 TEKRKDDTIEKLTTVLEDFFTTIDIELVGPETTAFSQPSSSLPNAITDVF------DLQS 218

Query: 157 GSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGN 216
           G+ T  +VS+ +DN+LSP HTLVQI+CQDHKGLLYDIMRTLKD+NIQ+SYGRFS++ RG 
Sbjct: 219 GTSTSDSVSIVMDNTLSPAHTLVQIMCQDHKGLLYDIMRTLKDFNIQISYGRFSKKPRGK 278

Query: 217 CEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLRVTVVSRGPDTELLVANPVELSGK 276
           CEIDLFIMQ DGKKIVDPSK+  LSSRL  ELL+PLRV VVSRGPDT+LLVANPVELSGK
Sbjct: 279 CEIDLFIMQVDGKKIVDPSKKESLSSRLKTELLRPLRVAVVSRGPDTQLLVANPVELSGK 338

Query: 277 GRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVW 336
           GRPLVF+DITLALKML +CIFSAE+GRH+IGDRE EVYRVLLDEG+GLS PRNKIE+GVW
Sbjct: 339 GRPLVFYDITLALKMLGLCIFSAEVGRHVIGDRECEVYRVLLDEGEGLSFPRNKIEKGVW 398

Query: 337 KLLMGWE 343
           K LMGWE
Sbjct: 399 KKLMGWE 405

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	343
TAIR|locus:2057936	410	ACR10 "ACT domain repeats 10"	0.874	0.731	0.674	1.9e-106
TAIR|locus:2039782	411	ACR9 "ACT domain repeats 9" [A	0.868	0.725	0.537	1.5e-81
TAIR|locus:2044289	456	ACR5 "ACT domain repeat 5" [Ar	0.221	0.166	0.362	1.1e-05
TAIR|locus:2025317	453	ACR3 "ACT domain repeat 3" [Ar	0.518	0.392	0.229	1.2e-05
TAIR|locus:2132609	449	ACR7 "ACT domain repeat 7" [Ar	0.696	0.532	0.223	0.00012
TAIR|locus:2034630	441	ACR8 "AT1G12420" [Arabidopsis	0.626	0.487	0.243	0.00026
TAIR|locus:2033223	455	ACR4 "ACT domain repeat 4" [Ar	0.492	0.371	0.255	0.00027
TAIR|locus:2078678	433	ACR6 "ACT domain repeat 6" [Ar	0.387	0.307	0.272	0.00042
TAIR|locus:2152094	477	ACR1 "ACT domain repeat 1" [Ar	0.134	0.096	0.428	0.00085

TAIR|locus:2057936 ACR10 "ACT domain repeats 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 1053 (375.7 bits), Expect = 1.9e-106, P = 1.9e-106
 Identities = 205/304 (67%), Positives = 244/304 (80%)

Query:    40 DVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRK 99
             D+FLLKL+C DR GLLYDVT VL +LE+ IEKVKISTTPDGKVMDLFFVTDTRELL T K
Sbjct:   111 DLFLLKLACSDRTGLLYDVTEVLYKLEINIEKVKISTTPDGKVMDLFFVTDTRELLGTVK 170

Query:   100 RKEDTYEHLKTILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSL 159
             R+ + YE+L+  +G++MIS D+E+VG EITACS +SS   +    +   D+  E  SG  
Sbjct:   171 RRNEVYEYLRDAIGDSMISYDIELVGPEITACSTSSSVAET----LFSSDVSGEHSSGLH 226

Query:   160 TCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEI 219
             T SNVS+ +DNSLS  HTL+ I CQDHKGLLYDIMRT KD+NIQ+SYGRF+ +   NCEI
Sbjct:   227 TSSNVSIAVDNSLSSAHTLIHITCQDHKGLLYDIMRTFKDFNIQISYGRFTIKLGKNCEI 286

Query:   220 DLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLRVTVVSRGPDTELLVANPVELSGKGRP 279
             DLFI+Q+DG+KI+D SK N L +RL  EL QPLRV +++RGPDTELLV NPVELSGKGRP
Sbjct:   287 DLFIVQSDGRKILDSSKLNALITRLRAELQQPLRVVMMNRGPDTELLVTNPVELSGKGRP 346

Query:   280 LVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLL 339
              VFHDI LALK +D CIFSAEIGRH+ GDREWEVY+VL++E D L +PR+KIEE VWK L
Sbjct:   347 QVFHDIALALKKIDTCIFSAEIGRHVTGDREWEVYKVLINEEDSLPIPRSKIEEEVWKTL 406

Query:   340 MGWE 343
             MGWE
Sbjct:   407 MGWE 410

GO:0005634 "nucleus" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2039782 ACR9 "ACT domain repeats 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 818 (293.0 bits), Expect = 1.5e-81, P = 1.5e-81
 Identities = 165/307 (53%), Positives = 218/307 (71%)

Query:    41 VFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKR 100
             ++LLK  C DRKGLL+DVT VL ELE TI++VK+ TTPDG+V+D+FF+TD  +LLHT++R
Sbjct:   109 LYLLKFFCRDRKGLLHDVTKVLTELEFTIQRVKVMTTPDGRVLDMFFITDAMDLLHTKQR 168

Query:   101 KEDTYEHLKTILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLT 160
             +  T +HL  +LG   +SC++E+ G E+ +  + SS  P A  ++   D   ++ SGS  
Sbjct:   169 QTKTCDHLTAVLGEHGVSCELELAGPELESVQRFSSLPPLAADELFGPD-GFDI-SGS-- 224

Query:   161 CSNVSV-TIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEI 219
              SN +V T+DN LSP HTL+QI C D KGL YDI+RT KD ++ ++YGRFS + +G   +
Sbjct:   225 SSNKAVLTVDNQLSPAHTLLQIRCVDQKGLFYDILRTSKDCDVHIAYGRFSSKVKGYRNL 284

Query:   220 DLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLRVTVVSRGPDTELLVANPVELSGKGRP 279
             +LF+   DG KI+DP  Q    +RL  E++ PLRV +V+RGPDTELLVANPVELSGKGRP
Sbjct:   285 ELFVRGTDGNKIMDPKHQANFCARLKEEMVCPLRVIIVNRGPDTELLVANPVELSGKGRP 344

Query:   280 LVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVP----RNKIEEGV 335
              VF+D+TLALK L ICIFSAEIGRH   DR+WEVYR LLDE     +     RN++ + V
Sbjct:   345 RVFYDVTLALKSLGICIFSAEIGRHSTLDRQWEVYRFLLDESREFPLASLRARNQVVDRV 404

Query:   336 WKLLMGW 342
              K LMGW
Sbjct:   405 TKTLMGW 411

GO:0005634 "nucleus" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

TAIR|locus:2044289 ACR5 "ACT domain repeat 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 99 (39.9 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
 Identities = 29/80 (36%), Positives = 43/80 (53%)

Query:    40 DVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRK 99
             DV ++K+   ++ G+L +V  VL EL LTI+K  IS+   G  MD+F VTD       + 
Sbjct:    36 DVTVIKVDSANKHGILLEVVQVLTELNLTIKKAYISSD-GGWFMDVFNVTDQDG---NKV 91

Query:   100 RKEDTYEHLKTILGNAMISC 119
               E   E+++  LG    SC
Sbjct:    92 TDEIVLEYIRKSLGPDESSC 111

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016597 "amino acid binding" evidence=IEA;ISS

TAIR|locus:2025317 ACR3 "ACT domain repeat 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 131 (51.2 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 44/192 (22%), Positives = 87/192 (45%)

Query:    44 LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKED 103
             +++   DR GLL +V+AVL +L + +   + + T + ++  + +V D     +   R  D
Sbjct:   131 IEIIARDRPGLLSEVSAVLADLNINVVAAE-AWTHNRRIACVLYVND-----NATSRAVD 184

Query:   104 TYEHLKTI---LGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPS---G 157
               E L ++   L N +  C+ +      T+ S  S+ +   +  M   D   E  +    
Sbjct:   185 DPERLSSMEEQLNNVLRGCEEQDEKFARTSLSIGSTHVDRRLHQMFFADRDYEAVTKLDD 244

Query:   158 SLTCS-NVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGN 216
             S +C     +T+++    G++++ + C+D   L++DI+ TL D    V +   S     +
Sbjct:   245 SASCGFEPKITVEHCEEKGYSVINVSCEDRPKLMFDIVCTLTDMQYIVFHATISS-SGSH 303

Query:   217 CEIDLFIMQADG 228
                + FI   DG
Sbjct:   304 ASQEYFIRHKDG 315

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0008773 "[protein-PII

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=TAS

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

TAIR|locus:2132609 ACR7 "ACT domain repeat 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 122 (48.0 bits), Expect = 0.00012, P = 0.00012
 Identities = 58/259 (22%), Positives = 112/259 (43%)

Query:    44 LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKED 103
             L+L+  DR GLL +V AVL +LE  + + K + T +G++  + +V D            D
Sbjct:   116 LELTGTDRVGLLSEVFAVLADLECDVVEAK-AWTHNGRIASMIYVKDGNSGTPI-DGDSD 173

Query:   104 TYEHLKTILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSN 163
               + ++  L N + + D     T        ++ +   +   + +D   E     +  S 
Sbjct:   174 RVQRVEGQLRNLLKADDGYQNDTRTCVSYGGNTHMERRLHQRMFMDRDYE-KKFDIEKSP 232

Query:   164 VSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFI 223
             + V++ N    G+++V + C+D   LL+D++ TL D    V +    R       ++ ++
Sbjct:   233 I-VSVQNLPKRGYSVVNLQCKDRMKLLFDVVCTLTDMAYIVFHAAI-RTVGETAFLEFYV 290

Query:   224 MQADGKKIV-DPSKQNGLSSRLWMELLQPLRVTVVSRGPDTELLVANPVELSGKGRPLVF 282
               +DG  +  +P +Q          L+Q L+  +  R      +    +EL    RP + 
Sbjct:   291 RHSDGHPVSSEPERQR---------LIQCLQAAIERR-----TVKGVRLELCTADRPGLL 336

Query:   283 HDITLALKMLDICIFSAEI 301
              ++T  L+   + I  AEI
Sbjct:   337 AEVTRILRENGLNIARAEI 355

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=ISS

TAIR|locus:2034630 ACR8 "AT1G12420" [Arabidopsis thaliana (taxid:3702)]

 Score = 119 (46.9 bits), Expect = 0.00026, P = 0.00026
 Identities = 57/234 (24%), Positives = 103/234 (44%)

Query:    44 LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDT---RELLHTRKR 100
             L+L+  DR GLL ++ AVL +L   +   K+  T +G+V  + ++ D      +L +  R
Sbjct:   116 LELTGTDRIGLLSEMFAVLSDLNCDVVDAKL-WTHNGRVASVIYLKDCISGAPILDSH-R 173

Query:   101 KEDTYEHLKTILGNAMISCDVEMVG-TEITACSQASSFLPSAIIDMLHLDMPVELPSGSL 159
                    LK +L       DV     T +T  S     +   +  ++  D   E  S   
Sbjct:   174 ISKIEGRLKNVLNG---DNDVNSAAKTCVTVDSMMH--IERRLHQLMFEDRDYERRSKKH 228

Query:   160 TCSN-VSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCE 218
               S  V VT+ N    G+++V + C+D   LL+D++ TL D    V +   +  +     
Sbjct:   229 ERSPMVVVTVQNWAERGYSVVNVHCRDRTKLLFDVVCTLTDMEYAVFHATINTAE-DQAH 287

Query:   219 IDLFIMQADGKKIVDPSKQNG----LSSRLWMELLQPLRVTVVSRGPDTELLVA 268
             ++ +I   DG  I   +++      L + +    L+ +R+ +  R PD + L+A
Sbjct:   288 LEFYIRHKDGSPISSEAERQRVIQCLEAAVERRALEGVRLEL--RHPDKQGLLA 339

GO:0005575 "cellular_component" evidence=ND

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

TAIR|locus:2033223 ACR4 "ACT domain repeat 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 119 (46.9 bits), Expect = 0.00027, P = 0.00027
 Identities = 46/180 (25%), Positives = 82/180 (45%)

Query:   166 VTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLF-IM 224
             V IDN      T++++   +  G+L ++++ L D N+ ++    S    G   +D+F + 
Sbjct:    27 VVIDNDSCKKATVIRVDSANEYGILLEVVQILTDLNLTITKAYIS--SDGGWFMDVFNVT 84

Query:   225 QADGKKIVDPSKQNGLSSRLWMELLQPLRVTVVSRGPDTELLVANPVELSGKGRPLVFHD 284
               DG K+ D    + +   L  E      +  V   P T+  V   +EL+G  RP +  +
Sbjct:    85 DQDGNKVTDEVVLDYIQKSLGPEACFSTSMRSVGVIPSTDSTV---IELTGCDRPGLLSE 141

Query:   285 ITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLD-EGDGLSVPR--NKIEEGVWKLLMG 341
             ++  L  L   + +AEI  H    R   V +V  D  G G+S P   ++I+  +  +L G
Sbjct:   142 LSAVLTHLKCSVLNAEIWTH--NTRAAAVMQVTDDLTGCGISDPERLSRIKNLLRNVLKG 199

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016597 "amino acid binding" evidence=IEA

GO:0005829 "cytosol" evidence=ISS

GO:0006521 "regulation of cellular amino acid metabolic process" evidence=ISS

GO:0009735 "response to cytokinin stimulus" evidence=IEP

TAIR|locus:2078678 ACR6 "ACT domain repeat 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 117 (46.2 bits), Expect = 0.00042, P = 0.00042
 Identities = 39/143 (27%), Positives = 67/143 (46%)

Query:   166 VTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLF-IM 224
             V IDN+ S   T++Q+   +  G L ++++ L D N+ +     S    G   +D+F ++
Sbjct:    18 VVIDNNASDDATVIQVDSVNKHGTLLEVVQVLTDMNLVIKKAYIS--SDGGWFMDVFKVI 75

Query:   225 QADGKKIVDPSKQNGLSSRLWME---LLQPLRVTVVSRGPDTELLVANPVELSGKGRPLV 281
               DG KI D    + +  R+       + PLR +V    P  E      +EL+G  RP +
Sbjct:    76 DQDGNKIRDTQVLDYIQKRIESNAGWFIPPLRSSVGVM-PTDEY---TSIELAGTDRPGL 131

Query:   282 FHDITLALKMLDICIFSAEIGRH 304
               +++  L  L   + +AEI  H
Sbjct:   132 LSEVSAVLTDLHCNVVNAEIWTH 154

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0019408 "dolichol biosynthetic process" evidence=RCA

TAIR|locus:2152094 ACR1 "ACT domain repeat 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 86 (35.3 bits), Expect = 0.00085, Sum P(2) = 0.00085
 Identities = 21/49 (42%), Positives = 32/49 (65%)

Query:    43 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGK-VMDLFFVTD 90
             L+K+   ++ G+L D+  VL +L+L I K  IS+  DG+  MD+F VTD
Sbjct:    38 LIKVDSANKYGILLDMVQVLADLDLVISKCYISS--DGEWFMDVFHVTD 84

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	343
cd04896	75	cd04896, ACT_ACR-like_3, ACT domain-containing pro	5e-39
cd04927	76	cd04927, ACT_ACR-like_2, Second ACT domain, of a n	2e-38
cd04898	77	cd04898, ACT_ACR-like_4, ACT domain-containing pro	4e-38
cd04899	70	cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domain	2e-15
cd04873	70	cd04873, ACT_UUR-ACR-like, ACT domains of the bact	3e-12
cd04873	70	cd04873, ACT_UUR-ACR-like, ACT domains of the bact	5e-09
PRK05092	931	PRK05092, PRK05092, PII uridylyl-transferase; Prov	5e-09
COG2844	867	COG2844, GlnD, UTP:GlnB (protein PII) uridylyltran	1e-08
cd04873	70	cd04873, ACT_UUR-ACR-like, ACT domains of the bact	4e-08
TIGR01693	850	TIGR01693, UTase_glnD, [Protein-PII] uridylyltrans	3e-07
cd02116	60	cd02116, ACT, ACT domains are commonly involved in	1e-06
cd04900	73	cd04900, ACT_UUR-like_1, ACT domain family, ACT_UU	9e-06
cd04926	72	cd04926, ACT_ACR_4, C-terminal ACT domain, of a no	1e-05
COG2844	867	COG2844, GlnD, UTP:GlnB (protein PII) uridylyltran	3e-05
PRK05092	931	PRK05092, PRK05092, PII uridylyl-transferase; Prov	5e-05
PRK01759	854	PRK01759, glnD, PII uridylyl-transferase; Provisio	7e-05
cd04876	71	cd04876, ACT_RelA-SpoT, ACT domain found C-termina	3e-04
pfam01842	66	pfam01842, ACT, ACT domain	0.001
cd04895	72	cd04895, ACT_ACR_1, ACT domain-containing protein	0.002
pfam13291	77	pfam13291, ACT_4, ACT domain	0.002
PRK00275	895	PRK00275, glnD, PII uridylyl-transferase; Provisio	0.003
PRK03059	856	PRK03059, PRK03059, PII uridylyl-transferase; Prov	0.003

>gnl|CDD|153168 cd04896, ACT_ACR-like_3, ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score =  132 bits (334), Expect = 5e-39
 Identities = 47/75 (62%), Positives = 59/75 (78%)

Query: 177 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSK 236
           TL+QI C D KGLLYDI+RT KD NIQ+SYGRFS + +G  E+DLFI+Q+DGKKI+DP K
Sbjct: 1   TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIVQSDGKKIMDPKK 60

Query: 237 QNGLSSRLWMELLQP 251
           Q  L +RL  E++ P
Sbjct: 61  QAALCARLREEMVCP 75

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 75

>gnl|CDD|153199 cd04927, ACT_ACR-like_2, Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score =  131 bits (331), Expect = 2e-38
 Identities = 55/76 (72%), Positives = 70/76 (92%)

Query: 42  FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRK 101
           FLLKL C DRKGLL+DVT VL ELELTIE+VK+STTPDG+V+DLFF+TD RELLHT+KR+
Sbjct: 1   FLLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDARELLHTKKRR 60

Query: 102 EDTYEHLKTILGNAMI 117
           E+TY++L+ +LG++MI
Sbjct: 61  EETYDYLRAVLGDSMI 76

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 76

>gnl|CDD|153170 cd04898, ACT_ACR-like_4, ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score =  130 bits (328), Expect = 4e-38
 Identities = 54/77 (70%), Positives = 59/77 (76%), Gaps = 3/77 (3%)

Query: 269 NPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGL---S 325
           NPVELSGKGRP VF+DITLALK L ICIFSAEIGRH  GDR+WEVYRVLL E D L    
Sbjct: 1   NPVELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEHDRLKLGG 60

Query: 326 VPRNKIEEGVWKLLMGW 342
             R+K+ + V K LMGW
Sbjct: 61  RQRSKVVDRVTKTLMGW 77

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 77

>gnl|CDD|153171 cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

 Score = 70.2 bits (173), Expect = 2e-15
 Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 5/75 (6%)

Query: 42  FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRK 101
            +L+L+  DR GLL DVT VL EL L I   KI+T  + +  D+F+VTD        +R+
Sbjct: 1   TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGE-RAEDVFYVTDADGQPLDPERQ 59

Query: 102 EDTYEHLKTILGNAM 116
               E L+  LG A+
Sbjct: 60  ----EALRAALGEAL 70

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|153145 cd04873, ACT_UUR-ACR-like, ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

 Score = 61.0 bits (149), Expect = 3e-12
 Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 1/60 (1%)

Query: 43  LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKE 102
           ++++   DR GLL D+T VL +L L I   +ISTT + + +D+F+VTD+       +R  
Sbjct: 2   VVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGE-RALDVFYVTDSDGRPLDPERIA 60

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|153145 cd04873, ACT_UUR-ACR-like, ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

 Score = 51.8 bits (125), Expect = 5e-09
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 177 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSK 236
           T+V++   D  GLL DI R L D  + +   R S    G   +D+F +     + +DP +
Sbjct: 1   TVVEVYAPDRPGLLADITRVLADLGLNIHDARIST--TGERALDVFYVTDSDGRPLDPER 58

Query: 237 QNGLSSRLWMEL 248
              L   L   L
Sbjct: 59  IARLEEALEDAL 70

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|235342 PRK05092, PRK05092, PII uridylyl-transferase; Provisional

 Score = 57.6 bits (140), Expect = 5e-09
 Identities = 51/207 (24%), Positives = 75/207 (36%), Gaps = 49/207 (23%)

Query: 50  DRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLK 109
           D  GL   +          I   +I TT DG+ +D F++ D         R ED    L 
Sbjct: 741 DHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDAFG------RDEDEPRRLA 794

Query: 110 TILGNAMISCDV---EMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSV 166
            +     I  D    E+   E  A          A          V  P          V
Sbjct: 795 RL--AKAIE-DALSGEVRLPEALAKRTKPKKRARAFH--------VP-PR---------V 833

Query: 167 TIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVS------YGRFSRRQRGNCE-- 218
           TIDN  S   T++++  +D  GLLYD+ R L D N+ ++      YG          E  
Sbjct: 834 TIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYG----------ERA 883

Query: 219 IDLFIMQ-ADGKKIVDPSKQNGLSSRL 244
           +D+F +    G KI + ++Q  +   L
Sbjct: 884 VDVFYVTDLFGLKITNEARQAAIRRAL 910

Length = 931

>gnl|CDD|225400 COG2844, GlnD, UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

 Score = 56.2 bits (136), Expect = 1e-08
 Identities = 41/198 (20%), Positives = 64/198 (32%), Gaps = 31/198 (15%)

Query: 48  CYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEH 107
             DR  L   V A L    L+I   +I TT DG  +D F V +         R+      
Sbjct: 691 APDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGFPVEEDRRAALRGE 750

Query: 108 LKTILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVT 167
           L   L +             I    +     P                          VT
Sbjct: 751 LIEALLSGKAQPPRR---RRIPRKLRHFPIPPR-------------------------VT 782

Query: 168 IDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-A 226
           I  + S   T++++   D  GLL  +     D  + +   + +    G    D+FI+  A
Sbjct: 783 ILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKIT--TFGERVEDVFIVTDA 840

Query: 227 DGKKIVDPSKQNGLSSRL 244
           DG+ +    +Q+ L   L
Sbjct: 841 DGQALNAELRQSLLQRLL 858

Length = 867

>gnl|CDD|153145 cd04873, ACT_UUR-ACR-like, ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

 Score = 49.5 bits (119), Expect = 4e-08
 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 3/70 (4%)

Query: 271 VELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPR-N 329
           VE+    RP +  DIT  L  L + I  A I     G+R  +V+ V   +G  L   R  
Sbjct: 3   VEVYAPDRPGLLADITRVLADLGLNIHDARISTT--GERALDVFYVTDSDGRPLDPERIA 60

Query: 330 KIEEGVWKLL 339
           ++EE +   L
Sbjct: 61  RLEEALEDAL 70

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|233534 TIGR01693, UTase_glnD, [Protein-PII] uridylyltransferase

 Score = 52.0 bits (125), Expect = 3e-07
 Identities = 42/201 (20%), Positives = 73/201 (36%), Gaps = 32/201 (15%)

Query: 40  DVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTD-TRELLHTR 98
           +VF+      D+ GL   V   L  L L++   +++TT DG  +D F V D         
Sbjct: 670 EVFIY---APDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPAAE 726

Query: 99  KRKEDTYEHLKTILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGS 158
           +  ++  + L  +L       D            Q  +  P                   
Sbjct: 727 RVFQELLQGLVDVLAGLAKDPDTISARRARRRRLQHFAVPPR------------------ 768

Query: 159 LTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCE 218
                  VTI N+ S   T++++   D  GLL  + RTL++  + +   + +    G   
Sbjct: 769 -------VTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKIT--TFGEKA 819

Query: 219 IDLFIMQ-ADGKKIVDPSKQN 238
            D+F +    G K+ D  +Q 
Sbjct: 820 EDVFYVTDLFGLKLTDEEEQR 840

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, Protein interactions]. Length = 850

>gnl|CDD|153139 cd02116, ACT, ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

 Score = 44.6 bits (106), Expect = 1e-06
 Identities = 20/58 (34%), Positives = 27/58 (46%)

Query: 44  LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRK 101
           L +S  DR GLL  V +VL E  + I  ++  T+ DG   D+F V D    L      
Sbjct: 1   LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIVVDGDGDLEKLLEA 58

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-prephenate dehydratase enzyme (P-protein), respectively. Aspartokinases typically consist of two C-terminal ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. ACT domain repeats have been shown to have nonequivalent ligand-binding sites with complex regulatory patterns such as those seen in the bifunctional enzyme, aspartokinase-homoserine dehydrogenase (ThrA). In other enzymes, such as phenylalanine hydroxylases, the ACT domain appears to function as a flexible small module providing allosteric regulation via transmission of conformational changes, these conformational changes are not necessarily initiated by regulatory ligand binding at the ACT domain itself. ACT domains are present either singularly, N- or C-terminal, or in pairs present C-terminal or between two catalytic domains. Unique to cyanobacteria are four ACT domains C-terminal to an aspartokinase domain. A few proteins are composed almost entirely of ACT domain repeats as seen in the four ACT domain protein, the ACR protein, found in higher plants; and the two ACT domain protein, the glycine cleavage system transcriptional repressor (GcvR) protein, found in some bacteria. Also seen are single ACT domain proteins similar to the Streptococcus pneumoniae ACT domain protein (uncharacterized pdb structure 1ZPV) found in both bacteria and archaea. Purportedly, the ACT domain is an evolutionarily mobile ligand binding regulatory module that has been fused to different enzymes at various times. Length = 60

>gnl|CDD|153172 cd04900, ACT_UUR-like_1, ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

 Score = 42.9 bits (102), Expect = 9e-06
 Identities = 17/41 (41%), Positives = 21/41 (51%)

Query: 50 DRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTD 90
          DR GL   +   L +L L I   +I TT DG  +D F V D
Sbjct: 10 DRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLD 50

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 73

>gnl|CDD|153198 cd04926, ACT_ACR_4, C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score = 42.3 bits (100), Expect = 1e-05
 Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 44 LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTD 90
          L+L   DR GLL DVT V  E  LT+ + +IST      +++F+VTD
Sbjct: 4  LELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQ-GDMAVNVFYVTD 49

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 72

>gnl|CDD|225400 COG2844, GlnD, UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 1/63 (1%)

Query: 40  DVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRK 99
           D  +L++   DR GLL  +  V  +L L++   KI TT   +V D+F VTD        +
Sbjct: 790 DKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKI-TTFGERVEDVFIVTDADGQALNAE 848

Query: 100 RKE 102
            ++
Sbjct: 849 LRQ 851

Length = 867

>gnl|CDD|235342 PRK05092, PRK05092, PII uridylyl-transferase; Provisional

 Score = 44.9 bits (107), Expect = 5e-05
 Identities = 22/60 (36%), Positives = 37/60 (61%), Gaps = 4/60 (6%)

Query: 33  SFSPKPSDVF-LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDG-KVMDLFFVTD 90
           +   + S+ F +++++  DR GLLYD+T  L +L L I    I+T   G + +D+F+VTD
Sbjct: 834 TIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATY--GERAVDVFYVTD 891

Length = 931

>gnl|CDD|234980 PRK01759, glnD, PII uridylyl-transferase; Provisional

 Score = 44.3 bits (105), Expect = 7e-05
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)

Query: 50  DRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLK 109
           DR GLL  V+ V  EL L +   KI+T  + K  D F +T+ +      + ++     L 
Sbjct: 792 DRAGLLAQVSQVFSELNLNLLNAKITTIGE-KAEDFFILTNQQGQALDEEERKALKSRLL 850

Query: 110 TILG 113
           + L 
Sbjct: 851 SNLS 854

Length = 854

>gnl|CDD|153148 cd04876, ACT_RelA-SpoT, ACT domain found C-terminal of the RelA/SpoT domains

 Score = 38.2 bits (90), Expect = 3e-04
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 44 LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGK-VMDL-FFVTDTREL 94
          +++   DR GLL D+T V+ E ++ I  V   T  DG   + L   V D   L
Sbjct: 1  IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEVRDLEHL 53

ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes in E. coli, a bifunctional Rel/Spo protein has been discovered in most gram-positive organisms studied so far. These bifunctional Rel/Spo homologs (rsh) appear to modulate (p)ppGpp levels through two distinct active sites that are controlled by a reciprocal regulatory mechanism ensuring inverse coupling of opposing activities. In studies with the Streptococcus equisimilis Rel/Spo homolog, the C-terminal domain appears to be involved in this reciprocal regulation of the two opposing catalytic activities present in the N-terminal domain, ensuring that both synthesis and degradation activities are not coinduced. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 71

>gnl|CDD|190133 pfam01842, ACT, ACT domain

 Score = 36.6 bits (85), Expect = 0.001
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 44  LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPD-GKVMDLFFVTDTRELLHTRKR 100
           L++   DR GLL +V   L +  + IE +  ST+ D   ++ +  V D  +L    + 
Sbjct: 3   LEVGVPDRPGLLAEVFGALADRGINIESISQSTSGDKAGIVFIVVVVDEEDLEAALEA 60

This family of domains generally have a regulatory role. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. The ACT domain is found in: D-3-phosphoglycerate dehydrogenase EC:1.1.1.95, which is inhibited by serine. Aspartokinase EC:2.7.2.4, which is regulated by lysine. Acetolactate synthase small regulatory subunit, which is inhibited by valine. Phenylalanine-4-hydroxylase EC:1.14.16.1, which is regulated by phenylalanine. Prephenate dehydrogenase EC:4.2.1.51. formyltetrahydrofolate deformylase EC:3.5.1.10, which is activated by methionine and inhibited by glycine. GTP pyrophosphokinase EC:2.7.6.5. Length = 66

>gnl|CDD|153167 cd04895, ACT_ACR_1, ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score = 36.3 bits (84), Expect = 0.002
 Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 3/49 (6%)

Query: 43 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGK-VMDLFFVTD 90
          L+K+    + G+L +   VL +L+L I K  IS+  DG   MD+F VTD
Sbjct: 3  LVKVDSARKPGILLEAVQVLTDLDLCITKAYISS--DGGWFMDVFHVTD 49

This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 72

>gnl|CDD|222030 pfam13291, ACT_4, ACT domain

 Score = 36.3 bits (85), Expect = 0.002
 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 4/54 (7%)

Query: 44 LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFF---VTDTREL 94
          L++   DR GLL D+T V+   +  I  V    + D  +  +     V D   L
Sbjct: 7  LEIEAIDRPGLLADITTVISNEKANILSVNAE-SKDNGIATINLTLEVKDLEHL 59

ACT domains bind to amino acids and regulate associated enzyme domains. These ACT domains are found at the C-terminus of the RelA protein. Length = 77

>gnl|CDD|234709 PRK00275, glnD, PII uridylyl-transferase; Provisional

 Score = 39.3 bits (92), Expect = 0.003
 Identities = 44/210 (20%), Positives = 73/210 (34%), Gaps = 36/210 (17%)

Query: 50  DRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDT--RELLHTRKRKEDTYEH 107
           D+        A + +L L I   +I T+     +D + V D     +     R E   E 
Sbjct: 713 DQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDDGEPIGDNPARIEQIREG 772

Query: 108 LKTILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVT 167
           L   L N                        P     ++   +P +L   +       VT
Sbjct: 773 LTEALRN------------------------PDDYPTIIQRRVPRQLKHFAFP---TQVT 805

Query: 168 IDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRR-QRGNCEIDLFIMQA 226
           I N      T+++I+  D  GLL  I R   ++++ +   + +   +R   E   FI  A
Sbjct: 806 ISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATLGER--VEDVFFITDA 863

Query: 227 DGKKIVDPSKQNGLSSRLWMELLQPLRVTV 256
           D + + DP     L SRL   + + L    
Sbjct: 864 DNQPLSDP----QLCSRLQDAICEQLDARN 889

Length = 895

>gnl|CDD|235101 PRK03059, PRK03059, PII uridylyl-transferase; Provisional

 Score = 39.1 bits (92), Expect = 0.003
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 42  FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTR 92
           ++L +S  DR GLLY +  VL E  +++   KI+T  + +V D F +  + 
Sbjct: 787 YILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTLGE-RVEDTFLIDGSG 836

Length = 856

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	343
PRK01759	854	glnD PII uridylyl-transferase; Provisional	99.97
PRK05007	884	PII uridylyl-transferase; Provisional	99.96
PRK01759	854	glnD PII uridylyl-transferase; Provisional	99.96
PRK05007	884	PII uridylyl-transferase; Provisional	99.96
PRK00275	895	glnD PII uridylyl-transferase; Provisional	99.95
PRK04374	869	PII uridylyl-transferase; Provisional	99.95
PRK03059	856	PII uridylyl-transferase; Provisional	99.95
TIGR01693	850	UTase_glnD [Protein-PII] uridylyltransferase. This	99.94
PRK05092	931	PII uridylyl-transferase; Provisional	99.93
PRK00275	895	glnD PII uridylyl-transferase; Provisional	99.93
TIGR01693	850	UTase_glnD [Protein-PII] uridylyltransferase. This	99.93
PRK04374	869	PII uridylyl-transferase; Provisional	99.93
PRK03381	774	PII uridylyl-transferase; Provisional	99.92
PRK03381	774	PII uridylyl-transferase; Provisional	99.92
PRK05092	931	PII uridylyl-transferase; Provisional	99.92
COG2844	867	GlnD UTP:GlnB (protein PII) uridylyltransferase [P	99.92
COG2844	867	GlnD UTP:GlnB (protein PII) uridylyltransferase [P	99.92
PRK03059	856	PII uridylyl-transferase; Provisional	99.91
cd04895	72	ACT_ACR_1 ACT domain-containing protein which is c	99.84
cd04897	75	ACT_ACR_3 ACT domain-containing protein which is c	99.84
cd04896	75	ACT_ACR-like_3 ACT domain-containing protein which	99.77
cd04897	75	ACT_ACR_3 ACT domain-containing protein which is c	99.74
cd04896	75	ACT_ACR-like_3 ACT domain-containing protein which	99.69
PRK11589	190	gcvR glycine cleavage system transcriptional repre	99.68
cd04895	72	ACT_ACR_1 ACT domain-containing protein which is c	99.68
cd04927	76	ACT_ACR-like_2 Second ACT domain, of a novel type	99.64
cd04900	73	ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1,	99.63
cd04925	74	ACT_ACR_2 ACT domain-containing protein which is c	99.58
PRK11589	190	gcvR glycine cleavage system transcriptional repre	99.58
cd04900	73	ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1,	99.58
cd04927	76	ACT_ACR-like_2 Second ACT domain, of a novel type	99.57
cd04925	74	ACT_ACR_2 ACT domain-containing protein which is c	99.57
cd04928	68	ACT_TyrKc Uncharacterized, N-terminal ACT domain o	99.52
COG2716	176	GcvR Glycine cleavage system regulatory protein [A	99.35
cd04926	72	ACT_ACR_4 C-terminal ACT domain, of a novel type o	99.33
cd04926	72	ACT_ACR_4 C-terminal ACT domain, of a novel type o	99.32
PRK00227	693	glnD PII uridylyl-transferase; Provisional	99.32
cd04928	68	ACT_TyrKc Uncharacterized, N-terminal ACT domain o	99.31
COG2716	176	GcvR Glycine cleavage system regulatory protein [A	99.3
cd04899	70	ACT_ACR-UUR-like_2 C-terminal ACT domains of the b	99.25
PRK00227	693	glnD PII uridylyl-transferase; Provisional	99.2
cd04899	70	ACT_ACR-UUR-like_2 C-terminal ACT domains of the b	99.19
cd04898	77	ACT_ACR-like_4 ACT domain-containing protein which	99.01
cd04873	70	ACT_UUR-ACR-like ACT domains of the bacterial sign	98.99
cd04873	70	ACT_UUR-ACR-like ACT domains of the bacterial sign	98.89
PF13740	76	ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.	98.71
PF13740	76	ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.	98.65
cd04894	69	ACT_ACR-like_1 ACT domain-containing protein which	98.47
cd04893	77	ACT_GcvR_1 ACT domains that comprise the Glycine C	98.46
PF01842	66	ACT: ACT domain; InterPro: IPR002912 The ACT domai	98.45
cd04870	75	ACT_PSP_1 CT domains found N-terminal of phosphose	98.39
cd04870	75	ACT_PSP_1 CT domains found N-terminal of phosphose	98.38
cd04893	77	ACT_GcvR_1 ACT domains that comprise the Glycine C	98.38
PF01842	66	ACT: ACT domain; InterPro: IPR002912 The ACT domai	98.34
cd04875	74	ACT_F4HF-DF N-terminal ACT domain of formyltetrahy	98.12
cd04875	74	ACT_F4HF-DF N-terminal ACT domain of formyltetrahy	98.04
cd04872	88	ACT_1ZPV ACT domain proteins similar to the yet un	98.02
cd04872	88	ACT_1ZPV ACT domain proteins similar to the yet un	97.98
cd04869	81	ACT_GcvR_2 ACT domains that comprise the Glycine C	97.97
COG4747	142	ACT domain-containing protein [General function pr	97.95
PRK00194	90	hypothetical protein; Validated	97.94
cd04869	81	ACT_GcvR_2 ACT domains that comprise the Glycine C	97.93
PRK00194	90	hypothetical protein; Validated	97.91
COG4747	142	ACT domain-containing protein [General function pr	97.84
PRK13011	286	formyltetrahydrofolate deformylase; Reviewed	97.77
PRK06027	286	purU formyltetrahydrofolate deformylase; Reviewed	97.76
cd04894	69	ACT_ACR-like_1 ACT domain-containing protein which	97.75
TIGR00655	280	PurU formyltetrahydrofolate deformylase. This mode	97.75
PF13291	80	ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.	97.74
PF13291	80	ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.	97.71
PRK06027	286	purU formyltetrahydrofolate deformylase; Reviewed	97.68
PRK13010	289	purU formyltetrahydrofolate deformylase; Reviewed	97.64
COG3830	90	ACT domain-containing protein [Signal transduction	97.64
cd04887	74	ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te	97.61
PRK13010	289	purU formyltetrahydrofolate deformylase; Reviewed	97.53
cd04887	74	ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te	97.53
TIGR00655	280	PurU formyltetrahydrofolate deformylase. This mode	97.52
PRK13011	286	formyltetrahydrofolate deformylase; Reviewed	97.45
COG3830	90	ACT domain-containing protein [Signal transduction	97.35
COG0788	287	PurU Formyltetrahydrofolate hydrolase [Nucleotide	97.32
cd04889	56	ACT_PDH-BS-like C-terminal ACT domain of the monof	97.15
COG0788	287	PurU Formyltetrahydrofolate hydrolase [Nucleotide	97.15
cd04886	73	ACT_ThrD-II-like C-terminal ACT domain of biodegra	97.14
PRK06737	76	acetolactate synthase 1 regulatory subunit; Valida	97.14
PRK13562	84	acetolactate synthase 1 regulatory subunit; Provis	97.12
PRK08178	96	acetolactate synthase 1 regulatory subunit; Review	97.04
PRK08178	96	acetolactate synthase 1 regulatory subunit; Review	97.03
CHL00100	174	ilvH acetohydroxyacid synthase small subunit	97.02
cd04886	73	ACT_ThrD-II-like C-terminal ACT domain of biodegra	97.0
cd04909	69	ACT_PDH-BS C-terminal ACT domain of the monofuncti	96.98
PRK06737	76	acetolactate synthase 1 regulatory subunit; Valida	96.95
cd04878	72	ACT_AHAS N-terminal ACT domain of the Escherichia	96.94
cd04908	66	ACT_Bt0572_1 N-terminal ACT domain of a novel prot	96.92
cd04889	56	ACT_PDH-BS-like C-terminal ACT domain of the monof	96.92
cd04879	71	ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te	96.91
TIGR00119	157	acolac_sm acetolactate synthase, small subunit. ac	96.89
cd04877	74	ACT_TyrR N-terminal ACT domain of the TyrR protein	96.86
TIGR00119	157	acolac_sm acetolactate synthase, small subunit. ac	96.84
PRK11895	161	ilvH acetolactate synthase 3 regulatory subunit; R	96.82
cd04881	79	ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin	96.82
cd04888	76	ACT_PheB-BS C-terminal ACT domain of a small (~147	96.81
PRK11895	161	ilvH acetolactate synthase 3 regulatory subunit; R	96.81
cd04888	76	ACT_PheB-BS C-terminal ACT domain of a small (~147	96.81
cd04905	80	ACT_CM-PDT C-terminal ACT domain of the bifunction	96.81
cd04877	74	ACT_TyrR N-terminal ACT domain of the TyrR protein	96.74
cd04881	79	ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin	96.72
PRK11152	76	ilvM acetolactate synthase 2 regulatory subunit; P	96.72
cd04908	66	ACT_Bt0572_1 N-terminal ACT domain of a novel prot	96.72
cd04874	72	ACT_Af1403 N-terminal ACT domain of the yet unchar	96.69
PRK07431	587	aspartate kinase; Provisional	96.69
PRK13562	84	acetolactate synthase 1 regulatory subunit; Provis	96.68
PRK08577	136	hypothetical protein; Provisional	96.67
cd04903	71	ACT_LSD C-terminal ACT domain of the L-serine dehy	96.66
cd04878	72	ACT_AHAS N-terminal ACT domain of the Escherichia	96.62
cd04909	69	ACT_PDH-BS C-terminal ACT domain of the monofuncti	96.55
cd04905	80	ACT_CM-PDT C-terminal ACT domain of the bifunction	96.51
PRK11152	76	ilvM acetolactate synthase 2 regulatory subunit; P	96.5
cd04882	65	ACT_Bt0572_2 C-terminal ACT domain of a novel prot	96.44
CHL00100	174	ilvH acetohydroxyacid synthase small subunit	96.41
cd04879	71	ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te	96.41
cd04902	73	ACT_3PGDH-xct C-terminal ACT (regulatory) domain o	96.39
cd04903	71	ACT_LSD C-terminal ACT domain of the L-serine dehy	96.39
cd04882	65	ACT_Bt0572_2 C-terminal ACT domain of a novel prot	96.35
cd04884	72	ACT_CBS C-terminal ACT domain of the cystathionine	96.3
cd04901	69	ACT_3PGDH C-terminal ACT (regulatory) domain of D-	96.29
cd04876	71	ACT_RelA-SpoT ACT domain found C-terminal of the R	96.27
PRK04435	147	hypothetical protein; Provisional	96.23
PRK08577	136	hypothetical protein; Provisional	96.22
cd04880	75	ACT_AAAH-PDT-like ACT domain of the nonheme iron-d	96.11
PRK07431	587	aspartate kinase; Provisional	96.1
cd02116	60	ACT ACT domains are commonly involved in specifica	96.08
PRK04435	147	hypothetical protein; Provisional	96.06
cd04902	73	ACT_3PGDH-xct C-terminal ACT (regulatory) domain o	96.05
cd02116	60	ACT ACT domains are commonly involved in specifica	96.02
cd04898	77	ACT_ACR-like_4 ACT domain-containing protein which	95.99
cd04874	72	ACT_Af1403 N-terminal ACT domain of the yet unchar	95.81
cd04876	71	ACT_RelA-SpoT ACT domain found C-terminal of the R	95.78
cd04901	69	ACT_3PGDH C-terminal ACT (regulatory) domain of D-	95.7
PRK06635	404	aspartate kinase; Reviewed	95.7
cd04931	90	ACT_PAH ACT domain of the nonheme iron-dependent a	95.64
cd04883	72	ACT_AcuB C-terminal ACT domain of the Bacillus sub	95.59
PF13710	63	ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.	95.53
cd04883	72	ACT_AcuB C-terminal ACT domain of the Bacillus sub	95.42
cd04884	72	ACT_CBS C-terminal ACT domain of the cystathionine	95.4
cd04931	90	ACT_PAH ACT domain of the nonheme iron-dependent a	95.33
TIGR00719	208	sda_beta L-serine dehydratase, iron-sulfur-depende	95.24
cd04880	75	ACT_AAAH-PDT-like ACT domain of the nonheme iron-d	95.14
PRK07334	403	threonine dehydratase; Provisional	95.1
cd04904	74	ACT_AAAH ACT domain of the nonheme iron-dependent,	95.08
cd04929	74	ACT_TPH ACT domain of the nonheme iron-dependent a	95.06
PRK07334	403	threonine dehydratase; Provisional	95.06
PF13710	63	ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.	95.04
PRK06635	404	aspartate kinase; Reviewed	94.95
PRK10872	743	relA (p)ppGpp synthetase I/GTP pyrophosphokinase;	94.84
cd04871	84	ACT_PSP_2 ACT domains found N-terminal of phosphos	94.81
TIGR00719	208	sda_beta L-serine dehydratase, iron-sulfur-depende	94.6
TIGR00656	401	asp_kin_monofn aspartate kinase, monofunctional cl	94.56
COG1707	218	ACT domain-containing protein [General function pr	94.28
PRK10872	743	relA (p)ppGpp synthetase I/GTP pyrophosphokinase;	94.18
PRK11092	702	bifunctional (p)ppGpp synthetase II/ guanosine-3',	94.08
TIGR00656	401	asp_kin_monofn aspartate kinase, monofunctional cl	94.05
PRK11092	702	bifunctional (p)ppGpp synthetase II/ guanosine-3',	93.96
cd04904	74	ACT_AAAH ACT domain of the nonheme iron-dependent,	93.84
PRK11899	279	prephenate dehydratase; Provisional	93.73
COG1707	218	ACT domain-containing protein [General function pr	93.61
TIGR00691	683	spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (	93.28
PRK06291	465	aspartate kinase; Provisional	93.26
TIGR00691	683	spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (	93.23
cd04871	84	ACT_PSP_2 ACT domains found N-terminal of phosphos	93.12
cd04930	115	ACT_TH ACT domain of the nonheme iron-dependent ar	93.06
PRK11899	279	prephenate dehydratase; Provisional	93.06
cd04885	68	ACT_ThrD-I Tandem C-terminal ACT domains of threon	93.0
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	92.75
PRK06291	465	aspartate kinase; Provisional	92.62
PRK08210	403	aspartate kinase I; Reviewed	92.51
PRK06382	406	threonine dehydratase; Provisional	92.17
COG0077	279	PheA Prephenate dehydratase [Amino acid transport	92.01
PF13840	65	ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2	91.99
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	91.91
COG0317	701	SpoT Guanosine polyphosphate pyrophosphohydrolases	91.89
PLN02551	521	aspartokinase	91.79
COG0317	701	SpoT Guanosine polyphosphate pyrophosphohydrolases	91.7
cd04929	74	ACT_TPH ACT domain of the nonheme iron-dependent a	91.41
PRK08210	403	aspartate kinase I; Reviewed	91.31
cd04930	115	ACT_TH ACT domain of the nonheme iron-dependent ar	90.61
COG0527	447	LysC Aspartokinases [Amino acid transport and meta	90.58
cd04906	85	ACT_ThrD-I_1 First of two tandem C-terminal ACT do	90.55
PRK09034	454	aspartate kinase; Reviewed	90.45
COG0077	279	PheA Prephenate dehydratase [Amino acid transport	90.45
cd04885	68	ACT_ThrD-I Tandem C-terminal ACT domains of threon	90.31
PLN02551	521	aspartokinase	90.25
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	90.02
PRK09436	819	thrA bifunctional aspartokinase I/homoserine dehyd	89.91
COG0440	163	IlvH Acetolactate synthase, small (regulatory) sub	89.84
PRK10622	386	pheA bifunctional chorismate mutase/prephenate deh	89.32
PRK09181	475	aspartate kinase; Validated	89.3
PF13840	65	ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2	89.24
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	89.23
PRK06545	359	prephenate dehydrogenase; Validated	89.11
PRK09084	448	aspartate kinase III; Validated	89.09
COG0440	163	IlvH Acetolactate synthase, small (regulatory) sub	88.88
PRK09181	475	aspartate kinase; Validated	88.76
TIGR00657	441	asp_kinases aspartate kinase. The Lys-sensitive en	88.54
PRK10622	386	pheA bifunctional chorismate mutase/prephenate deh	88.35
PRK06349	426	homoserine dehydrogenase; Provisional	88.25
PRK06382	406	threonine dehydratase; Provisional	88.06
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	87.93
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	87.81
PRK08198	404	threonine dehydratase; Provisional	87.23
cd04906	85	ACT_ThrD-I_1 First of two tandem C-terminal ACT do	87.23
TIGR01127	380	ilvA_1Cterm threonine dehydratase, medium form. A	86.33
PRK08818	370	prephenate dehydrogenase; Provisional	86.31
TIGR01127	380	ilvA_1Cterm threonine dehydratase, medium form. A	86.03
PRK09436	819	thrA bifunctional aspartokinase I/homoserine dehyd	86.01
PRK09034	454	aspartate kinase; Reviewed	84.8
PRK08818	370	prephenate dehydrogenase; Provisional	84.54
KOG2663	309	consensus Acetolactate synthase, small subunit [Am	84.43
PF05088	1528	Bac_GDH: Bacterial NAD-glutamate dehydrogenase	83.98
PRK08198	404	threonine dehydratase; Provisional	83.95
cd04935	75	ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AK	83.71
cd04891	61	ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-	83.53
PRK09084	448	aspartate kinase III; Validated	83.49
COG2150	167	Predicted regulator of amino acid metabolism, cont	82.33
cd04913	75	ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-	82.3
cd04932	75	ACT_AKiii-LysC-EC_1 ACT domains located C-terminal	82.08
cd04932	75	ACT_AKiii-LysC-EC_1 ACT domains located C-terminal	81.87
COG2150	167	Predicted regulator of amino acid metabolism, cont	81.82
TIGR00657	441	asp_kinases aspartate kinase. The Lys-sensitive en	81.77
COG4492	150	PheB ACT domain-containing protein [General functi	81.01
PRK06545	359	prephenate dehydrogenase; Validated	80.96
PLN02317	382	arogenate dehydratase	80.62
cd04912	75	ACT_AKiii-LysC-EC-like_1 ACT domains located C-ter	80.6
cd04890	62	ACT_AK-like_1 ACT domains found C-terminal to the	80.25

>PRK01759 glnD PII uridylyl-transferase; Provisional

Probab=99.97  E-value=6.8e-29  Score=263.49  Aligned_cols=174  Identities=19%  Similarity=0.299  Sum_probs=151.6

Q ss_pred             CCccEEEEEeCCCCCeEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEe-cCCCCCCChHHHHH
Q 019269          161 CSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNG  239 (343)
Q Consensus       161 ~~~~~V~i~~~~~~~~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~-~~g~~i~~~~~~~~  239 (343)
                      ..++.|.++++.+.++|+|+|+++||||||++|+++|+.+|+||++|+|.| +.+++++|+|+|. .+|.++. ++++++
T Consensus       662 ~~~~~V~i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T-~~~g~alD~F~V~d~~g~~~~-~~~~~~  739 (854)
T PRK01759        662 RGDLLVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIIT-SQDGYVLDSFIVTELNGKLLE-FDRRRQ  739 (854)
T ss_pred             CCCCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEE-ccCCEEEEEEEEeCCCCCCCC-HHHHHH
Confidence            346788899999999999999999999999999999999999999999996 5889999999997 6788875 668899


Q ss_pred             HHHHHHHHHcCCcceee---ecC-----CCCceeeee-------eeEEEEeCCCccHHHHHHHHHHhCCceEEEEEeecc
Q 019269          240 LSSRLWMELLQPLRVTV---VSR-----GPDTELLVA-------NPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRH  304 (343)
Q Consensus       240 l~~~L~~~L~~~~~~~~---~~~-----~~~~~v~~~-------~~ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~~~  304 (343)
                      |++.|.++|.++.....   .++     ..+++|.++       |+|+|.|.|||||||+|+++|.++|++|++|||+  
T Consensus       740 l~~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~--  817 (854)
T PRK01759        740 LEQALTKALNTNKLKKLNLEENHKLQHFHVKTEVRFLNEEKQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKIT--  817 (854)
T ss_pred             HHHHHHHHHcCCCCcchhccccccccCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEc--
Confidence            99999999987653321   111     125777764       6899999999999999999999999999999999  


Q ss_pred             ccCceEeeeeEEEEEcCCCCCCCchHHHHHHHHHHcC
Q 019269          305 MIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLMG  341 (343)
Q Consensus       305 T~g~~~~dv~~F~v~~~~g~~l~~~~~~~~l~~~L~~  341 (343)
                      |.|+||+|+  |||+|.+|+|++++.+ ++|+++|+.
T Consensus       818 T~gerv~D~--Fyv~~~~g~~l~~~~~-~~l~~~L~~  851 (854)
T PRK01759        818 TIGEKAEDF--FILTNQQGQALDEEER-KALKSRLLS  851 (854)
T ss_pred             ccCceEEEE--EEEECCCCCcCChHHH-HHHHHHHHH
Confidence            999999999  9999999999997744 999998863

>PRK05007 PII uridylyl-transferase; Provisional

Probab=99.96  E-value=3.6e-28  Score=258.78  Aligned_cols=173  Identities=19%  Similarity=0.239  Sum_probs=149.2

Q ss_pred             CccEEEEEeCCCCCeEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEe-cCCCCCCChHHHHHH
Q 019269          162 SNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGL  240 (343)
Q Consensus       162 ~~~~V~i~~~~~~~~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~-~~g~~i~~~~~~~~l  240 (343)
                      .++.|.+++..+.++|+|+|+++||||||++|+++|+.+|+||++|+|+| +.+|++.|+|+|. .+|.++. ++++++|
T Consensus       687 ~~p~V~i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T-~~dg~alD~F~V~d~~g~~~~-~~~~~~I  764 (884)
T PRK05007        687 DKPLVLLSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFT-SRDGMAMDTFIVLEPDGSPLS-QDRHQVI  764 (884)
T ss_pred             CCCeEEEEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEE-cCCCeEEEEEEEECCCCCCCC-HHHHHHH
Confidence            46778899999999999999999999999999999999999999999997 5667999999997 6777774 6688999


Q ss_pred             HHHHHHHHcCCccee-ee---cC-----CCCceeeee-------eeEEEEeCCCccHHHHHHHHHHhCCceEEEEEeecc
Q 019269          241 SSRLWMELLQPLRVT-VV---SR-----GPDTELLVA-------NPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRH  304 (343)
Q Consensus       241 ~~~L~~~L~~~~~~~-~~---~~-----~~~~~v~~~-------~~ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~~~  304 (343)
                      ++.|.++|.++.... ..   ++     ..+++|.++       |+|+|.|.|||||||+|+++|.++|++|++|||+  
T Consensus       765 ~~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~--  842 (884)
T PRK05007        765 RKALEQALTQSSPQPPKPRRLPAKLRHFNVPTEVSFLPTHTDRRSYMELIALDQPGLLARVGKIFADLGISLHGARIT--  842 (884)
T ss_pred             HHHHHHHHcCCCCCcccccccccccCCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEe--
Confidence            999999998763221 11   11     125677765       5899999999999999999999999999999999  


Q ss_pred             ccCceEeeeeEEEEEcCCCCCCCchHHHHHHHHHHcC
Q 019269          305 MIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLMG  341 (343)
Q Consensus       305 T~g~~~~dv~~F~v~~~~g~~l~~~~~~~~l~~~L~~  341 (343)
                      |.|+||+|+  |||++.+|.|++++ .+++|+++|+.
T Consensus       843 T~gera~Dv--FyV~~~~g~~l~~~-~~~~l~~~L~~  876 (884)
T PRK05007        843 TIGERVEDL--FILATADRRALNEE-LQQELRQRLTE  876 (884)
T ss_pred             ccCceEEEE--EEEEcCCCCcCCHH-HHHHHHHHHHH
Confidence            999999999  99999999999955 57888888763

>PRK01759 glnD PII uridylyl-transferase; Provisional

Probab=99.96  E-value=7.4e-28  Score=255.63  Aligned_cols=184  Identities=20%  Similarity=0.272  Sum_probs=157.1

Q ss_pred             cCCCCCCCEEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEecCCCcccchhHHHHHHHHHHHHh
Q 019269           33 SFSPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTIL  112 (343)
Q Consensus        33 ~~~~~~~~~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~~l  112 (343)
                      ..+..+.+++.|.|+++||||||++|+++|+.+|+||++|+|+|+.+|+++|+|+|.+.+|.+++++++++|++.|.++|
T Consensus       669 i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g~~~~~~~~~~l~~~L~~aL  748 (854)
T PRK01759        669 ISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNGKLLEFDRRRQLEQALTKAL  748 (854)
T ss_pred             EEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHH
Confidence            34566779999999999999999999999999999999999999889999999999999888777789999999999999


Q ss_pred             cccccccccccccceeecccCCCCCCchHHHhhhcccCCCCCCCCCCCCCccEEEEEeCCCCCeEEEEEEECCcccHHHH
Q 019269          113 GNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYD  192 (343)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~i~V~~~DrpGLl~~  192 (343)
                      .+...          ...    ....++               ...++..++.|.|+|+.+..+|+|+|.++||||||++
T Consensus       749 ~~~~~----------~~~----~~~~~~---------------~~~~~~~~~~V~~dn~~s~~~T~iev~a~DrpGLL~~  799 (854)
T PRK01759        749 NTNKL----------KKL----NLEENH---------------KLQHFHVKTEVRFLNEEKQEQTEMELFALDRAGLLAQ  799 (854)
T ss_pred             cCCCC----------cch----hccccc---------------cccCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHH
Confidence            76431          100    000011               1123557899999999999999999999999999999


Q ss_pred             HHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEe-cCCCCCCChHHHHHHHHHHHHHH
Q 019269          193 IMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMEL  248 (343)
Q Consensus       193 i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~-~~g~~i~~~~~~~~l~~~L~~~L  248 (343)
                      |+++|+++|++|+.|+|.  |.|+++.|+|||+ .+|.++.++++ +.|+++|.++|
T Consensus       800 I~~~l~~~~l~i~~AkI~--T~gerv~D~Fyv~~~~g~~l~~~~~-~~l~~~L~~~l  853 (854)
T PRK01759        800 VSQVFSELNLNLLNAKIT--TIGEKAEDFFILTNQQGQALDEEER-KALKSRLLSNL  853 (854)
T ss_pred             HHHHHHHCCCEEEEEEEc--ccCceEEEEEEEECCCCCcCChHHH-HHHHHHHHHHh
Confidence            999999999999999998  7999999999997 67888886655 88999988776

>PRK05007 PII uridylyl-transferase; Provisional

Probab=99.96  E-value=2.8e-27  Score=251.97  Aligned_cols=187  Identities=21%  Similarity=0.219  Sum_probs=159.4

Q ss_pred             cCCCCCCCEEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEecCCCcccchhHHHHHHHHHHHHh
Q 019269           33 SFSPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTIL  112 (343)
Q Consensus        33 ~~~~~~~~~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~~l  112 (343)
                      -.+..+.+++.|+|+++||||||++||++|+.+|+||++|+|+|+.+|+++|+|+|.+.+|..++++++++|++.|.++|
T Consensus       693 i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~g~~~~~~~~~~I~~~L~~aL  772 (884)
T PRK05007        693 LSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPDGSPLSQDRHQVIRKALEQAL  772 (884)
T ss_pred             EEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCCCCCCCHHHHHHHHHHHHHHH
Confidence            34566678999999999999999999999999999999999999999999999999999887667789999999999999


Q ss_pred             cccccccccccccceeecccCCCCCCchHHHhhhcccCCCCCCCCCCCCCccEEEEEeCCCCCeEEEEEEECCcccHHHH
Q 019269          113 GNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYD  192 (343)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~i~V~~~DrpGLl~~  192 (343)
                      .+....       ....      ...++               ...++..++.|.|+|+.+..+|+|+|.++||||||++
T Consensus       773 ~~~~~~-------~~~~------~~~~~---------------~~~~~~~~~~V~~d~~~s~~~TvlEV~a~DRpGLL~~  824 (884)
T PRK05007        773 TQSSPQ-------PPKP------RRLPA---------------KLRHFNVPTEVSFLPTHTDRRSYMELIALDQPGLLAR  824 (884)
T ss_pred             cCCCCC-------cccc------ccccc---------------ccCCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHH
Confidence            764310       0000      00111               1123567899999999999999999999999999999


Q ss_pred             HHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEe-cCCCCCCChHHHHHHHHHHHHHHcC
Q 019269          193 IMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMELLQ  250 (343)
Q Consensus       193 i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~-~~g~~i~~~~~~~~l~~~L~~~L~~  250 (343)
                      |+++|+++|++|+.|+|.  |.|+++.|+|||+ .+|.++. +++.+.|+++|.++|..
T Consensus       825 I~~~l~~~~l~I~~AkI~--T~gera~DvFyV~~~~g~~l~-~~~~~~l~~~L~~~l~~  880 (884)
T PRK05007        825 VGKIFADLGISLHGARIT--TIGERVEDLFILATADRRALN-EELQQELRQRLTEALNP  880 (884)
T ss_pred             HHHHHHHCCcEEEEEEEe--ccCceEEEEEEEEcCCCCcCC-HHHHHHHHHHHHHHHhh
Confidence            999999999999999998  7999999999997 6788887 66788999999988864

>PRK00275 glnD PII uridylyl-transferase; Provisional

Probab=99.95  E-value=9.7e-27  Score=247.97  Aligned_cols=184  Identities=22%  Similarity=0.254  Sum_probs=156.4

Q ss_pred             CCEEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEecCCCccc--chhHHHHHHHHHHHHhcccc
Q 019269           39 SDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLH--TRKRKEDTYEHLKTILGNAM  116 (343)
Q Consensus        39 ~~~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~g~~~--~~~~~~~l~~~L~~~l~~~~  116 (343)
                      .+.+.|+|+++||||||+++|++|+.+|+||++|+|+|+.+|+++|+|+|.+++|..+  +++++++|++.|.++|.+..
T Consensus       702 ~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~~g~~~~~~~~r~~~i~~~L~~~L~~~~  781 (895)
T PRK00275        702 EGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDDGEPIGDNPARIEQIREGLTEALRNPD  781 (895)
T ss_pred             CCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCCCCCCccchHHHHHHHHHHHHHHHcCCC
Confidence            5899999999999999999999999999999999999999999999999999988753  45799999999999997643


Q ss_pred             cccccccccceeecccCCCCCCchHHHhhhcccCCCCCCCCCCCCCccEEEEEeCCCCCeEEEEEEECCcccHHHHHHHH
Q 019269          117 ISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRT  196 (343)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~i~V~~~DrpGLl~~i~~~  196 (343)
                      ...      ..+      ..+.+++               ..++..++.|.++++.+.++|+|+|+++||||||++|+++
T Consensus       782 ~~~------~~~------~~~~~~~---------------~~~~~~~~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~  834 (895)
T PRK00275        782 DYP------TII------QRRVPRQ---------------LKHFAFPTQVTISNDAQRPVTVLEIIAPDRPGLLARIGRI  834 (895)
T ss_pred             ccc------hhh------hhhhhhh---------------ccCCCCCCEEEEEECCCCCeEEEEEEECCCCCHHHHHHHH
Confidence            100      000      0111111               1234567899999999999999999999999999999999


Q ss_pred             HHhCCeeEEEEEEEEeecCCEEEEEEEEe-cCCCCCCChHHHHHHHHHHHHHHcCC
Q 019269          197 LKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMELLQP  251 (343)
Q Consensus       197 L~~~glnI~~A~i~t~t~g~~~~d~F~v~-~~g~~i~~~~~~~~l~~~L~~~L~~~  251 (343)
                      |+.+|+||++|+|.|  .|+++.|+|+|+ .+|.++.+++++++|+++|.++|..+
T Consensus       835 L~~~~l~I~~AkI~T--~g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L~~~L~~~  888 (895)
T PRK00275        835 FLEFDLSLQNAKIAT--LGERVEDVFFITDADNQPLSDPQLCSRLQDAICEQLDAR  888 (895)
T ss_pred             HHHCCCEEEEeEEEe--cCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhcc
Confidence            999999999999995  599999999997 67888887778899999999999754

>PRK04374 PII uridylyl-transferase; Provisional

Probab=99.95  E-value=6.4e-26  Score=240.42  Aligned_cols=190  Identities=17%  Similarity=0.229  Sum_probs=155.1

Q ss_pred             CCCcccCCCCCCCEEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEecCCCcccchhHHHHHHHH
Q 019269           28 PFLFFSFSPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEH  107 (343)
Q Consensus        28 ~~~~~~~~~~~~~~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~  107 (343)
                      |+-....+....+.+.|+|+++|+||||++||++|+.+|+||++|+|+|+.+|+++|+|+|.++.|..  ..++.+|++.
T Consensus       677 ~~v~~~~~~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~~~~--~~~~~~i~~~  754 (869)
T PRK04374        677 TLVKARRAVPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQDTYA--DGDPQRLAAA  754 (869)
T ss_pred             CeEEEeeeccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCCCCC--hHHHHHHHHH
Confidence            33333334555689999999999999999999999999999999999999999999999999988764  4668889999


Q ss_pred             HHHHhcccccccccccccceeecccCCCCCCchHHHhhhcccCCCCCCCCCCCCCccEEEEEeCCCCCeEEEEEEECCcc
Q 019269          108 LKTILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHK  187 (343)
Q Consensus       108 L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~i~V~~~Drp  187 (343)
                      |.++|.++...       ....     ....++               +..++.+++.|.++++.+.++|+|+|++.|||
T Consensus       755 l~~~l~~~~~~-------~~~~-----~~~~~~---------------~~~~~~~~~~V~~~~~~~~~~t~leI~a~Drp  807 (869)
T PRK04374        755 LRQVLAGDLQK-------VRPA-----RRAVPR---------------QLRHFRFAPRVEFSESAGGRRTRISLVAPDRP  807 (869)
T ss_pred             HHHHHcCCCCc-------cccc-----cccCcc---------------cccCCCCCCeEEEeecCCCCeEEEEEEeCCcC
Confidence            99999774310       0010     000111               12345678999999999999999999999999


Q ss_pred             cHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEe-cCCCCCCChHHHHHHHHHHHHHHc
Q 019269          188 GLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMELL  249 (343)
Q Consensus       188 GLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~-~~g~~i~~~~~~~~l~~~L~~~L~  249 (343)
                      |||++|+++|+++|+||++|+|+  |.|+++.|+|+|+ .+|.++.++++ +.|+++|.++|.
T Consensus       808 GLLa~Ia~~l~~~~l~I~~AkI~--T~g~~a~D~F~V~d~~g~~~~~~~~-~~l~~~L~~~l~  867 (869)
T PRK04374        808 GLLADVAHVLRMQHLRVHDARIA--TFGERAEDQFQITDEHDRPLSESAR-QALRDALCACLD  867 (869)
T ss_pred             cHHHHHHHHHHHCCCeEEEeEEE--ecCCEEEEEEEEECCCCCcCChHHH-HHHHHHHHHHhc
Confidence            99999999999999999999999  4599999999997 67777766555 899999988874

>PRK03059 PII uridylyl-transferase; Provisional

Probab=99.95  E-value=6e-26  Score=240.94  Aligned_cols=195  Identities=19%  Similarity=0.213  Sum_probs=157.3

Q ss_pred             CCCCCCCCcccCCCCCCCEEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEecCCCcccchhHHH
Q 019269           23 TDGCMPFLFFSFSPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKE  102 (343)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~g~~~~~~~~~  102 (343)
                      .+.+-|+-. -.+....+.+.|+|+++||||||+++|++|+.+|+||++|+|+|+.+|+++|+|+|.++.|...++++++
T Consensus       661 ~~~~~~~v~-~~~~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~~~~~~~~~~~~  739 (856)
T PRK03059        661 VDTDTPIVR-ARLSPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDPEEDVHYRDIIN  739 (856)
T ss_pred             ccCCCCeEE-EEecCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCCCCCCChHHHHH
Confidence            344455444 3455556899999999999999999999999999999999999999999999999999887755668999


Q ss_pred             HHHHHHHHHhcccccccccccccceeecccCCCCCCchHHHhhhcccCCCCCCCCCCCCCccEEEEEeCCCCCeEEEEEE
Q 019269          103 DTYEHLKTILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIV  182 (343)
Q Consensus       103 ~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~i~V~  182 (343)
                      +|++.|.++|.++...       ....     ..+.++               +...+..++.|.++++.+.++|+|+|+
T Consensus       740 ~i~~~l~~~l~~~~~~-------~~~~-----~~~~~~---------------~~~~~~~~~~V~~~~~~~~~~T~i~V~  792 (856)
T PRK03059        740 LVEHELAERLAEQAPL-------PEPS-----KGRLSR---------------QVKHFPITPRVDLRPDERGQYYILSVS  792 (856)
T ss_pred             HHHHHHHHHHcCCCCc-------chhh-----cccccc---------------cccCCCCCceEEEEEcCCCCEEEEEEE
Confidence            9999999999764310       0000     000111               112355678999999999999999999


Q ss_pred             ECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHc
Q 019269          183 CQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELL  249 (343)
Q Consensus       183 ~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~~L~  249 (343)
                      ++||||||++|+++|+.+|+||++|+|+|  .|+++.|+|+|+  +.++.+++++++|++.|.++|.
T Consensus       793 a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T--~~~~v~DvF~V~--~~~~~~~~~~~~l~~~L~~~L~  855 (856)
T PRK03059        793 ANDRPGLLYAIARVLAEHRVSVHTAKINT--LGERVEDTFLID--GSGLSDNRLQIQLETELLDALA  855 (856)
T ss_pred             eCCcchHHHHHHHHHHHCCCeEEEEEEee--cCCEEEEEEEEc--CCCCCCHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999995  589999999995  2334567788999999988764

>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase

Probab=99.94  E-value=1e-25  Score=240.31  Aligned_cols=173  Identities=20%  Similarity=0.245  Sum_probs=150.0

Q ss_pred             ccEEEEEeCCCCCeEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEe-cCCCCCCChHHHHHHH
Q 019269          163 NVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLS  241 (343)
Q Consensus       163 ~~~V~i~~~~~~~~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~-~~g~~i~~~~~~~~l~  241 (343)
                      .+.|.+.+....++|+|+|+++||||||++|+++|+.+|+||++|+|+| |.+++++|+|+|. .+|.++.+++++++|+
T Consensus       655 ~~~v~~~~~~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~t-t~~g~~lD~F~V~~~~g~~~~~~~~~~~i~  733 (850)
T TIGR01693       655 GPLALIDGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNT-TKDGVALDTFVVQDLFGSPPAAERVFQELL  733 (850)
T ss_pred             CCEEEEeccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEE-ecCCEEEEEEEEECCCCCCCCcHHHHHHHH
Confidence            4677888777789999999999999999999999999999999999997 7889999999997 6778887777899999


Q ss_pred             HHHHHHHcCCccee--ee-----cC-----CCCceeeee-------eeEEEEeCCCccHHHHHHHHHHhCCceEEEEEee
Q 019269          242 SRLWMELLQPLRVT--VV-----SR-----GPDTELLVA-------NPVELSGKGRPLVFHDITLALKMLDICIFSAEIG  302 (343)
Q Consensus       242 ~~L~~~L~~~~~~~--~~-----~~-----~~~~~v~~~-------~~ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~  302 (343)
                      +.|.++|.+.....  +.     ++     ..+++|.++       |.++|.|.|||||||+|+++|.++|++|++|+|.
T Consensus       734 ~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~  813 (850)
T TIGR01693       734 QGLVDVLAGLAKDPDTISARRARRRRLQHFAVPPRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKIT  813 (850)
T ss_pred             HHHHHHHcCCCccccccccccCCcccccCCCCCCeEEEccCCCCCeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEE
Confidence            99999998754211  11     11     125677764       6899999999999999999999999999999999


Q ss_pred             ccccCceEeeeeEEEEEcCCCCCCCchHHHHHHHHHHcC
Q 019269          303 RHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLMG  341 (343)
Q Consensus       303 ~~T~g~~~~dv~~F~v~~~~g~~l~~~~~~~~l~~~L~~  341 (343)
                        |.|++++|+  |||++..|.|++++ .++.|+++|+.
T Consensus       814 --t~~~~~~d~--F~v~~~~g~~~~~~-~~~~l~~~L~~  847 (850)
T TIGR01693       814 --TFGEKAEDV--FYVTDLFGLKLTDE-EEQRLLEVLAA  847 (850)
T ss_pred             --ecCccceeE--EEEECCCCCCCCHH-HHHHHHHHHHH
Confidence              999999999  99999999999975 67899988863

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.

>PRK05092 PII uridylyl-transferase; Provisional

Probab=99.93  E-value=1.3e-24  Score=233.31  Aligned_cols=191  Identities=23%  Similarity=0.335  Sum_probs=158.9

Q ss_pred             CCCCCCCEEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEecCCCcc-cchhHHHHHHHHHHHHh
Q 019269           34 FSPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELL-HTRKRKEDTYEHLKTIL  112 (343)
Q Consensus        34 ~~~~~~~~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~g~~-~~~~~~~~l~~~L~~~l  112 (343)
                      .+..+.+.+.|+|+++||||||++|+++|+.+||||++|+|+|+.+|+++|+|+|+++.|.. .+++++++|++.|..++
T Consensus       725 ~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~~g~~~~~~~~~~~l~~~L~~~l  804 (931)
T PRK05092        725 RPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDAFGRDEDEPRRLARLAKAIEDAL  804 (931)
T ss_pred             EecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHH
Confidence            34555789999999999999999999999999999999999999999999999999988765 46789999999999988


Q ss_pred             cccccccccccccceeecccCCCCCCchHHHhhhcccCCCCCCCCCCCCCccEEEEEeCCCCCeEEEEEEECCcccHHHH
Q 019269          113 GNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYD  192 (343)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~i~V~~~DrpGLl~~  192 (343)
                      .+....       ...         ..++. .      +  ..+..++..++.|.|+++.+.++|+|+|+++||||||++
T Consensus       805 ~~~~~~-------~~~---------~~~r~-~------~--~~~~~~~~~~~~V~~~~~~s~~~t~i~I~~~DrpGLl~~  859 (931)
T PRK05092        805 SGEVRL-------PEA---------LAKRT-K------P--KKRARAFHVPPRVTIDNEASNRFTVIEVNGRDRPGLLYD  859 (931)
T ss_pred             cCCCCC-------ccc---------ccccc-C------c--cccccCCCCCCEEEEeeCCCCCeEEEEEEECCcCcHHHH
Confidence            654210       000         00000 0      0  001123556899999999999999999999999999999


Q ss_pred             HHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEe-cCCCCCCChHHHHHHHHHHHHHHcCC
Q 019269          193 IMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMELLQP  251 (343)
Q Consensus       193 i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~-~~g~~i~~~~~~~~l~~~L~~~L~~~  251 (343)
                      |+++|+++|+||.+|+|.  |.|+++.|+|+|+ .+|.++.++++++.|+++|.++|.++
T Consensus       860 I~~~l~~~gl~I~~A~I~--T~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~L~~~L~~~  917 (931)
T PRK05092        860 LTRALSDLNLNIASAHIA--TYGERAVDVFYVTDLFGLKITNEARQAAIRRALLAALAEG  917 (931)
T ss_pred             HHHHHHHCCceEEEEEEE--EcCCEEEEEEEEeCCCCCcCCCHHHHHHHHHHHHHHhcCc
Confidence            999999999999999998  5789999999997 67888888878899999999999754

>PRK00275 glnD PII uridylyl-transferase; Provisional

Probab=99.93  E-value=7.9e-25  Score=233.35  Aligned_cols=173  Identities=17%  Similarity=0.303  Sum_probs=141.9

Q ss_pred             ccEEEEEeCCC---CCeEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEe-cCCCCCC-ChHHH
Q 019269          163 NVSVTIDNSLS---PGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIV-DPSKQ  237 (343)
Q Consensus       163 ~~~V~i~~~~~---~~~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~-~~g~~i~-~~~~~  237 (343)
                      .+.|.+.+...   .+.++|.|+++||||||++|+++|+.+|+||.+|+|+| +.+|.++|+|+|. .+|.++. +++++
T Consensus       688 ~~~v~~~~~~~~~~~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~T-t~dg~alD~F~V~d~~g~~~~~~~~r~  766 (895)
T PRK00275        688 GPLVLIKETTQREFEGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIIT-SSSQFTLDTYIVLDDDGEPIGDNPARI  766 (895)
T ss_pred             CCeEEEEecCccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEE-cCCCeEEEEEEEeCCCCCCccchHHHH
Confidence            34555665554   58999999999999999999999999999999999997 6778999999997 6777754 45789


Q ss_pred             HHHHHHHHHHHcCCccee--eec---C-----CCCceeeee-------eeEEEEeCCCccHHHHHHHHHHhCCceEEEEE
Q 019269          238 NGLSSRLWMELLQPLRVT--VVS---R-----GPDTELLVA-------NPVELSGKGRPLVFHDITLALKMLDICIFSAE  300 (343)
Q Consensus       238 ~~l~~~L~~~L~~~~~~~--~~~---~-----~~~~~v~~~-------~~ieV~~~DrpGLL~~I~~~l~~~gi~I~~Ak  300 (343)
                      ++|++.|.++|.++....  +..   +     ..++.+.+.       |.|+|.|.||||||++|+++|+++|+||++|+
T Consensus       767 ~~i~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~Ak  846 (895)
T PRK00275        767 EQIREGLTEALRNPDDYPTIIQRRVPRQLKHFAFPTQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAK  846 (895)
T ss_pred             HHHHHHHHHHHcCCCccchhhhhhhhhhccCCCCCCEEEEEECCCCCeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeE
Confidence            999999999998765321  111   1     113455443       58999999999999999999999999999999


Q ss_pred             eeccccCceEeeeeEEEEEcCCCCCCCchHHHHHHHHHHc
Q 019269          301 IGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLM  340 (343)
Q Consensus       301 I~~~T~g~~~~dv~~F~v~~~~g~~l~~~~~~~~l~~~L~  340 (343)
                      |.  |.|++|.|+  |||++.+|.+++++..+++|+++|.
T Consensus       847 I~--T~g~~v~D~--F~V~d~~g~~l~~~~~~~~l~~~L~  882 (895)
T PRK00275        847 IA--TLGERVEDV--FFITDADNQPLSDPQLCSRLQDAIC  882 (895)
T ss_pred             EE--ecCCEEEEE--EEEECCCCCCCCCHHHHHHHHHHHH
Confidence            99  999999999  9999999999986445566666664

>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase

Probab=99.93  E-value=1.3e-24  Score=231.79  Aligned_cols=184  Identities=23%  Similarity=0.276  Sum_probs=153.1

Q ss_pred             CCCCEEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEecCCCccc-chhHHHHHHHHHHHHhccc
Q 019269           37 KPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLH-TRKRKEDTYEHLKTILGNA  115 (343)
Q Consensus        37 ~~~~~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~g~~~-~~~~~~~l~~~L~~~l~~~  115 (343)
                      ...+++.|+|+++||||||++|+++|+.+|+||++|+|+|+.+|+++|+|+|++.+|..+ +++++++|++.|.++|.+.
T Consensus       664 ~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~g~~~~~~~~~~~i~~~L~~~L~~~  743 (850)
T TIGR01693       664 RPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPAAERVFQELLQGLVDVLAGL  743 (850)
T ss_pred             CCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCCCCCCCcHHHHHHHHHHHHHHHcCC
Confidence            338999999999999999999999999999999999999888999999999999988764 4567999999999999764


Q ss_pred             ccccccccccceeecccCCCCCCchHHHhhhcccCCCCCCCCCCCCCccEEEEEeCCCCCeEEEEEEECCcccHHHHHHH
Q 019269          116 MISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMR  195 (343)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~i~V~~~DrpGLl~~i~~  195 (343)
                      ....      .....    ....++               +..++..++.|.|+|+.+.++|+|+|.|+||||||++|++
T Consensus       744 ~~~~------~~~~~----~~~~~~---------------~~~~~~~~~~V~~d~~~s~~~t~~~v~~~DrpGll~~i~~  798 (850)
T TIGR01693       744 AKDP------DTISA----RRARRR---------------RLQHFAVPPRVTILNTASRKATIMEVRALDRPGLLARVGR  798 (850)
T ss_pred             Cccc------ccccc----ccCCcc---------------cccCCCCCCeEEEccCCCCCeEEEEEEECCccHHHHHHHH
Confidence            3100      00000    000111               1123557899999999999999999999999999999999


Q ss_pred             HHHhCCeeEEEEEEEEeecCCEEEEEEEEe-cCCCCCCChHHHHHHHHHHHHHH
Q 019269          196 TLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMEL  248 (343)
Q Consensus       196 ~L~~~glnI~~A~i~t~t~g~~~~d~F~v~-~~g~~i~~~~~~~~l~~~L~~~L  248 (343)
                      +|+++|+||++|+|.  |.|+++.|+|+++ ..|.++.+ ++.+.|+++|.++|
T Consensus       799 ~l~~~~~~i~~a~i~--t~~~~~~d~F~v~~~~g~~~~~-~~~~~l~~~L~~~l  849 (850)
T TIGR01693       799 TLEELGLSIQSAKIT--TFGEKAEDVFYVTDLFGLKLTD-EEEQRLLEVLAASV  849 (850)
T ss_pred             HHHHCCCeEEEEEEE--ecCccceeEEEEECCCCCCCCH-HHHHHHHHHHHHHh
Confidence            999999999999998  6789999999998 67888876 67889999988765

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.

>PRK04374 PII uridylyl-transferase; Provisional

Probab=99.93  E-value=2.1e-24  Score=228.95  Aligned_cols=169  Identities=17%  Similarity=0.208  Sum_probs=140.1

Q ss_pred             cEEEEE-eCCCCCeEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEe-cCCCCCCChHHHHHHH
Q 019269          164 VSVTID-NSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLS  241 (343)
Q Consensus       164 ~~V~i~-~~~~~~~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~-~~g~~i~~~~~~~~l~  241 (343)
                      +.|.+. .....+.+.|+|+++||||||++|+++|+.+|+||.+|+|+| +.+|.++|+|+|. +++..   .+++++++
T Consensus       677 ~~v~~~~~~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t-~~~g~~ld~f~V~~~~~~~---~~~~~~i~  752 (869)
T PRK04374        677 TLVKARRAVPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLD-APHDAIFDVFEVLPQDTYA---DGDPQRLA  752 (869)
T ss_pred             CeEEEeeeccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEE-cCCCEEEEEEEEeCCCCCC---hHHHHHHH
Confidence            444443 366678999999999999999999999999999999999997 6778999999997 45543   34678899


Q ss_pred             HHHHHHHcCCccee-eecC---------CCCceeeee-------eeEEEEeCCCccHHHHHHHHHHhCCceEEEEEeecc
Q 019269          242 SRLWMELLQPLRVT-VVSR---------GPDTELLVA-------NPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRH  304 (343)
Q Consensus       242 ~~L~~~L~~~~~~~-~~~~---------~~~~~v~~~-------~~ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~~~  304 (343)
                      +.|.++|.++.... +..+         ..+|+|.+.       +.|+|.|.|||||||+|+++|+++|++|++|+|.  
T Consensus       753 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~--  830 (869)
T PRK04374        753 AALRQVLAGDLQKVRPARRAVPRQLRHFRFAPRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIA--  830 (869)
T ss_pred             HHHHHHHcCCCCccccccccCcccccCCCCCCeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEE--
Confidence            99999998864321 1111         124666653       6899999999999999999999999999999999  


Q ss_pred             ccCceEeeeeEEEEEcCCCCCCCchHHHHHHHHHHcC
Q 019269          305 MIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLMG  341 (343)
Q Consensus       305 T~g~~~~dv~~F~v~~~~g~~l~~~~~~~~l~~~L~~  341 (343)
                      |.|++|+|+  |||++++|.+++++.+ ++|+++|+.
T Consensus       831 T~g~~a~D~--F~V~d~~g~~~~~~~~-~~l~~~L~~  864 (869)
T PRK04374        831 TFGERAEDQ--FQITDEHDRPLSESAR-QALRDALCA  864 (869)
T ss_pred             ecCCEEEEE--EEEECCCCCcCChHHH-HHHHHHHHH
Confidence            999999999  9999999999887644 888888863

>PRK03381 PII uridylyl-transferase; Provisional

Probab=99.92  E-value=7.4e-24  Score=223.09  Aligned_cols=176  Identities=18%  Similarity=0.256  Sum_probs=141.0

Q ss_pred             CCEEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEecCCCcccchhHHHHHHHHHHHHhcccccc
Q 019269           39 SDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMIS  118 (343)
Q Consensus        39 ~~~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~~l~~~~~~  118 (343)
                      .+.+.|+|+|+||||||++||++|+.+||||++|+|+| .+|+++|+|+|.++.|...   .++++++.|.+++.+... 
T Consensus       597 ~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t-~dg~~ld~F~V~~~~~~~~---~~~~l~~~L~~~L~~~~~-  671 (774)
T PRK03381        597 PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRS-HDGVAVLEFVVSPRFGSPP---DAALLRQDLRRALDGDLD-  671 (774)
T ss_pred             CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEe-cCCEEEEEEEEECCCCCcc---hHHHHHHHHHHHHcCCCc-
Confidence            78999999999999999999999999999999999999 7999999999999887643   358899999999876421 


Q ss_pred             cccccccceeecccCCCCCCchHHHhhhcccCCCCCCCCCCCCCccEEEEEeCCCCCeEEEEEEECCcccHHHHHHHHHH
Q 019269          119 CDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLK  198 (343)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~i~V~~~DrpGLl~~i~~~L~  198 (343)
                      ..     ...          .++. +.      ....+...+..++.|.+++..+.++|+|+|+++||||||++|+++|+
T Consensus       672 ~~-----~~~----------~~~~-~~------~~~~~~~~~~~~~~v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~L~  729 (774)
T PRK03381        672 VL-----ARL----------AARE-AA------AAAVPVRRPAAPPRVLWLDGASPDATVLEVRAADRPGLLARLARALE  729 (774)
T ss_pred             hh-----hhh----------hccc-cc------ccccccccCCCCcEEEEEECCCCCeEEEEEEeCCchhHHHHHHHHHH
Confidence            00     000          0000 00      00001123456789999999999999999999999999999999999


Q ss_pred             hCCeeEEEEEEEEeecCCEEEEEEEEe-cCCCCCCChHHHHHHHHHHH
Q 019269          199 DYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLW  245 (343)
Q Consensus       199 ~~glnI~~A~i~t~t~g~~~~d~F~v~-~~g~~i~~~~~~~~l~~~L~  245 (343)
                      ++|+||++|+|.  |.|+++.|+|+|+ .+|.++.++  .+.|+++|.
T Consensus       730 ~~~lnI~~AkI~--T~g~~a~D~F~V~d~~g~~~~~~--~~~l~~~L~  773 (774)
T PRK03381        730 RAGVDVRWARVA--TLGADVVDVFYVTGAAGGPLADA--RAAVEQAVL  773 (774)
T ss_pred             HCCCeEEEEEEe--ecCCeEEEEEEEECCCCCcCchH--HHHHHHHhh
Confidence            999999999999  5599999999997 678888754  667776653

>PRK03381 PII uridylyl-transferase; Provisional

Probab=99.92  E-value=8.1e-24  Score=222.82  Aligned_cols=166  Identities=18%  Similarity=0.203  Sum_probs=138.9

Q ss_pred             ccEEEEEeCCCCCeEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEe-cCCCCCCChHHHHHHH
Q 019269          163 NVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLS  241 (343)
Q Consensus       163 ~~~V~i~~~~~~~~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~-~~g~~i~~~~~~~~l~  241 (343)
                      ++.|.+.+.. .+.++|+|+++||||||++|+++|+.+|+||++|+|+|  .++.+.|+|+|. .+|.+.    .+++++
T Consensus       587 ~~~v~~~~~~-~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t--~dg~~ld~F~V~~~~~~~~----~~~~l~  659 (774)
T PRK03381        587 GVHVEIAPAD-PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRS--HDGVAVLEFVVSPRFGSPP----DAALLR  659 (774)
T ss_pred             CCEEEEeeCC-CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEe--cCCEEEEEEEEECCCCCcc----hHHHHH
Confidence            4667777777 89999999999999999999999999999999999994  678999999998 555532    257899


Q ss_pred             HHHHHHHcCCccee--eec-------CC-----CCceeeee-------eeEEEEeCCCccHHHHHHHHHHhCCceEEEEE
Q 019269          242 SRLWMELLQPLRVT--VVS-------RG-----PDTELLVA-------NPVELSGKGRPLVFHDITLALKMLDICIFSAE  300 (343)
Q Consensus       242 ~~L~~~L~~~~~~~--~~~-------~~-----~~~~v~~~-------~~ieV~~~DrpGLL~~I~~~l~~~gi~I~~Ak  300 (343)
                      +.|.+++.++....  +..       +.     .++.+.+.       +.|+|.|.||||||++|+++|+++|+||++|+
T Consensus       660 ~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~Ak  739 (774)
T PRK03381        660 QDLRRALDGDLDVLARLAAREAAAAAVPVRRPAAPPRVLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVRWAR  739 (774)
T ss_pred             HHHHHHHcCCCchhhhhhcccccccccccccCCCCcEEEEEECCCCCeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEE
Confidence            99999998864321  000       11     12344332       68999999999999999999999999999999


Q ss_pred             eeccccCceEeeeeEEEEEcCCCCCCCchHHHHHHHHHHcC
Q 019269          301 IGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLMG  341 (343)
Q Consensus       301 I~~~T~g~~~~dv~~F~v~~~~g~~l~~~~~~~~l~~~L~~  341 (343)
                      |.  |.|++|+|+  |||++++|.+++++  +++|+++|++
T Consensus       740 I~--T~g~~a~D~--F~V~d~~g~~~~~~--~~~l~~~L~~  774 (774)
T PRK03381        740 VA--TLGADVVDV--FYVTGAAGGPLADA--RAAVEQAVLA  774 (774)
T ss_pred             Ee--ecCCeEEEE--EEEECCCCCcCchH--HHHHHHHhhC
Confidence            99  999999999  99999999999976  6999999974

>PRK05092 PII uridylyl-transferase; Provisional

Probab=99.92  E-value=1.2e-23  Score=226.09  Aligned_cols=174  Identities=22%  Similarity=0.328  Sum_probs=145.3

Q ss_pred             CccEEEEEeCCCCCeEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEe-cCCCCCCChHHHHHH
Q 019269          162 SNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGL  240 (343)
Q Consensus       162 ~~~~V~i~~~~~~~~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~-~~g~~i~~~~~~~~l  240 (343)
                      .++.|.+.+....+.++|+|+++||||||++|+++|+.+|+||.+|+|+| +.++.+.|+|+|. .+|.++.+++++++|
T Consensus       718 ~~~~v~~~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t-~~dg~alD~F~V~~~~g~~~~~~~~~~~l  796 (931)
T PRK05092        718 RPLATEVRPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFT-TTDGRALDTFWIQDAFGRDEDEPRRLARL  796 (931)
T ss_pred             CCcEEEEEecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEE-ecCCeEEEEEEEECCCCCCCCCHHHHHHH
Confidence            45677788888889999999999999999999999999999999999997 5788999999997 667776677889999


Q ss_pred             HHHHHHHHcCCccee--e----ec--C----CCCceeeee-------eeEEEEeCCCccHHHHHHHHHHhCCceEEEEEe
Q 019269          241 SSRLWMELLQPLRVT--V----VS--R----GPDTELLVA-------NPVELSGKGRPLVFHDITLALKMLDICIFSAEI  301 (343)
Q Consensus       241 ~~~L~~~L~~~~~~~--~----~~--~----~~~~~v~~~-------~~ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI  301 (343)
                      ++.|..++.+...+.  +    .+  +    ..++.|.++       +.|+|.+.||||||++|+++|+++|+||++|+|
T Consensus       797 ~~~L~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I  876 (931)
T PRK05092        797 AKAIEDALSGEVRLPEALAKRTKPKKRARAFHVPPRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHI  876 (931)
T ss_pred             HHHHHHHHcCCCCCccccccccCccccccCCCCCCEEEEeeCCCCCeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEE
Confidence            999999997653321  1    01  1    013555554       589999999999999999999999999999999


Q ss_pred             eccccCceEeeeeEEEEEcCCCCCCCchHHHHHHHHHHc
Q 019269          302 GRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLM  340 (343)
Q Consensus       302 ~~~T~g~~~~dv~~F~v~~~~g~~l~~~~~~~~l~~~L~  340 (343)
                      .  |.|+++.|+  |||++.+|.++.++..+++|+++|.
T Consensus       877 ~--T~~~~~~D~--F~v~d~~g~~i~~~~~~~~l~~~L~  911 (931)
T PRK05092        877 A--TYGERAVDV--FYVTDLFGLKITNEARQAAIRRALL  911 (931)
T ss_pred             E--EcCCEEEEE--EEEeCCCCCcCCCHHHHHHHHHHHH
Confidence            9  999999999  9999999999986544555655553

>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=2.9e-24  Score=218.22  Aligned_cols=171  Identities=19%  Similarity=0.281  Sum_probs=140.7

Q ss_pred             ccEEEEEeCCCCCeEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEe-cCCCCCCChHHHHHHH
Q 019269          163 NVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLS  241 (343)
Q Consensus       163 ~~~V~i~~~~~~~~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~-~~g~~i~~~~~~~~l~  241 (343)
                      .+.|.+......+.|+|.|+++|+|.||+.++..+...|.||++|+|+| |..|+++|+|+|. ++|.++. +++...++
T Consensus       671 ~~Lv~~~~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~t-t~dG~alDtfiv~~~~g~~~~-~dr~~~~~  748 (867)
T COG2844         671 KPLVLISVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFT-TRDGYALDTFIVLEPDGFPVE-EDRRAALR  748 (867)
T ss_pred             CcceeeeecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEE-ccCCceeeeEEEecCCCCccc-hhHHHHHH
Confidence            4566666677778999999999999999999999999999999999998 6778999999998 7787776 66777888


Q ss_pred             HHHHHHHcCCcce-ee---ecCC-----CCceeeee-------eeEEEEeCCCccHHHHHHHHHHhCCceEEEEEeeccc
Q 019269          242 SRLWMELLQPLRV-TV---VSRG-----PDTELLVA-------NPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHM  305 (343)
Q Consensus       242 ~~L~~~L~~~~~~-~~---~~~~-----~~~~v~~~-------~~ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~~~T  305 (343)
                      ..|.+++...... ..   .++.     .+|++.+.       |.+||+|.||||||++|+++|.+++++|++|||+  |
T Consensus       749 ~~l~~~l~s~~~~~~~~~r~~r~~~~f~i~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkIt--T  826 (867)
T COG2844         749 GELIEALLSGKAQPPRRRRIPRKLRHFPIPPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKIT--T  826 (867)
T ss_pred             HHHHHHHhcCCCCCccccccCcccceeccCCceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeec--c
Confidence            8888877644222 11   0111     14555443       6899999999999999999999999999999999  9


Q ss_pred             cCceEeeeeEEEEEcCCCCCCCchHHHHHHHHHHc
Q 019269          306 IGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLM  340 (343)
Q Consensus       306 ~g~~~~dv~~F~v~~~~g~~l~~~~~~~~l~~~L~  340 (343)
                      .||||+|+  |||++..|.+++++ .++.+.+.|+
T Consensus       827 ~GErveD~--F~vt~~~~~~l~~~-~~q~l~~~ll  858 (867)
T COG2844         827 FGERVEDV--FIVTDADGQALNAE-LRQSLLQRLL  858 (867)
T ss_pred             ccccceeE--EEEeccccccCCHH-HHHHHHHHHH
Confidence            99999999  99999999999866 4566655554

>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=8.7e-24  Score=214.76  Aligned_cols=193  Identities=23%  Similarity=0.260  Sum_probs=157.3

Q ss_pred             CCCCCCcccCCCCCCCEEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEecCCCcccchhHHHHH
Q 019269           25 GCMPFLFFSFSPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDT  104 (343)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~g~~~~~~~~~~l  104 (343)
                      -+.|+-...-...+ +.+.|+|+++|+|.||+.+|+.+...|+||++|+|+|+.||+++|+|+|++++|..+++.+...+
T Consensus       669 ~~~~Lv~~~~r~~~-~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~~g~~~~~dr~~~~  747 (867)
T COG2844         669 LGKPLVLISVRPHS-GGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGFPVEEDRRAAL  747 (867)
T ss_pred             ccCcceeeeecccC-CceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecCCCCccchhHHHHH
Confidence            34444444444554 88999999999999999999999999999999999999999999999999999988888888888


Q ss_pred             HHHHHHHhcccccccccccccceeecccCCCCCCchHHHhhhcccCCCCCCCCCCCCCccEEEEEeCCCCCeEEEEEEEC
Q 019269          105 YEHLKTILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQ  184 (343)
Q Consensus       105 ~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~i~V~~~  184 (343)
                      +..|.+++......       +..      ....++               +..++.++|.|.|.+..+...|+|+|.+.
T Consensus       748 ~~~l~~~l~s~~~~-------~~~------~~r~~r---------------~~~~f~i~p~v~i~~t~~~~~t~lEv~al  799 (867)
T COG2844         748 RGELIEALLSGKAQ-------PPR------RRRIPR---------------KLRHFPIPPRVTILPTASNDKTVLEVRAL  799 (867)
T ss_pred             HHHHHHHHhcCCCC-------Ccc------ccccCc---------------ccceeccCCceeeccccCCCceEEEEEeC
Confidence            88888888653210       000      011122               22346788999999999999999999999


Q ss_pred             CcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEe-cCCCCCCChHHHHHHHHHHHHHHc
Q 019269          185 DHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMELL  249 (343)
Q Consensus       185 DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~-~~g~~i~~~~~~~~l~~~L~~~L~  249 (343)
                      ||||||++++++|++++++|++|+|.  |.|+++.|+|+|+ ..+.++. ++..+.+.+.|.+++.
T Consensus       800 DRpGLLa~v~~v~~dl~l~i~~AkIt--T~GErveD~F~vt~~~~~~l~-~~~~q~l~~~ll~al~  862 (867)
T COG2844         800 DRPGLLAALAGVFADLGLSLHSAKIT--TFGERVEDVFIVTDADGQALN-AELRQSLLQRLLEALL  862 (867)
T ss_pred             CcccHHHHHHHHHHhcccceeeeeec--cccccceeEEEEeccccccCC-HHHHHHHHHHHHHHhc
Confidence            99999999999999999999999998  7899999999998 7788885 4455566666666654

>PRK03059 PII uridylyl-transferase; Provisional

Probab=99.91  E-value=3.6e-23  Score=219.78  Aligned_cols=169  Identities=16%  Similarity=0.169  Sum_probs=137.5

Q ss_pred             ccEEEEEeCCCCCeEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEe-cCCCCCCChHHHHHHH
Q 019269          163 NVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLS  241 (343)
Q Consensus       163 ~~~V~i~~~~~~~~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~-~~g~~i~~~~~~~~l~  241 (343)
                      .+.|.+.+....+.+.|+|+++||||||++|+++|+.+|+||.+|+|+| +.+|.++|+|+|. ++|. ..+++++++|+
T Consensus       665 ~~~v~~~~~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t-~~~g~~ld~f~V~~~~~~-~~~~~~~~~i~  742 (856)
T PRK03059        665 TPIVRARLSPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHT-TRHGYALDTFQVLDPEED-VHYRDIINLVE  742 (856)
T ss_pred             CCeEEEEecCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEE-cCCCeEEEEEEEeCCCCC-CChHHHHHHHH
Confidence            3556677777889999999999999999999999999999999999997 6778999999997 4444 45567899999


Q ss_pred             HHHHHHHcCCccee--eec---CC-----CCceeeee-------eeEEEEeCCCccHHHHHHHHHHhCCceEEEEEeecc
Q 019269          242 SRLWMELLQPLRVT--VVS---RG-----PDTELLVA-------NPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRH  304 (343)
Q Consensus       242 ~~L~~~L~~~~~~~--~~~---~~-----~~~~v~~~-------~~ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~~~  304 (343)
                      +.|.++|.++....  ...   +.     .++.+.+.       |.|+|.|.||||||++|+.+|+++|+||++|+|.  
T Consensus       743 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~--  820 (856)
T PRK03059        743 HELAERLAEQAPLPEPSKGRLSRQVKHFPITPRVDLRPDERGQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKIN--  820 (856)
T ss_pred             HHHHHHHcCCCCcchhhcccccccccCCCCCceEEEEEcCCCCEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEe--
Confidence            99999998864321  111   11     13445442       6899999999999999999999999999999999  


Q ss_pred             ccCceEeeeeEEEEEcCCCCCCCchHHHHHHHHHHc
Q 019269          305 MIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLM  340 (343)
Q Consensus       305 T~g~~~~dv~~F~v~~~~g~~l~~~~~~~~l~~~L~  340 (343)
                      |.|++|+|+  |||.+   .+++++..+++|++.|.
T Consensus       821 T~~~~v~Dv--F~V~~---~~~~~~~~~~~l~~~L~  851 (856)
T PRK03059        821 TLGERVEDT--FLIDG---SGLSDNRLQIQLETELL  851 (856)
T ss_pred             ecCCEEEEE--EEEcC---CCCCCHHHHHHHHHHHH
Confidence            999999999  99953   33544445788888775

>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.84  E-value=9.4e-21  Score=140.81  Aligned_cols=69  Identities=20%  Similarity=0.222  Sum_probs=65.8

Q ss_pred             eeEEEEeCCCccHHHHHHHHHHhCCceEEEEEeeccccCceEeeeeEEEEEcCCCCCCCchHHHHHHHHHHcC
Q 019269          269 NPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLMG  341 (343)
Q Consensus       269 ~~ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~~~T~g~~~~dv~~F~v~~~~g~~l~~~~~~~~l~~~L~~  341 (343)
                      |+|+|.++|||||||+|+++|+++|++|++|||+  |.|++++|+  |||++.+|.|+++++.+++|+++|..
T Consensus         2 Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIs--T~Gerv~Dv--FyV~d~~g~kl~d~~~~~~l~~~L~~   70 (72)
T cd04895           2 TLVKVDSARKPGILLEAVQVLTDLDLCITKAYIS--SDGGWFMDV--FHVTDQLGNKLTDDSLIAYIEKSLGT   70 (72)
T ss_pred             EEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEe--ecCCeEEEE--EEEECCCCCCCCCHHHHHHHHHHhcc
Confidence            5899999999999999999999999999999999  999999999  99999999999876678999999975

This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.84  E-value=1.2e-20  Score=141.22  Aligned_cols=68  Identities=24%  Similarity=0.357  Sum_probs=64.4

Q ss_pred             eeEEEEeCCCccHHHHHHHHHHhCCceEEEEEeeccccCceEeeeeEEEEEcCCCCCCCchHHHHHHHHHHc
Q 019269          269 NPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLM  340 (343)
Q Consensus       269 ~~ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~~~T~g~~~~dv~~F~v~~~~g~~l~~~~~~~~l~~~L~  340 (343)
                      |+|+|.|+|||||||+|+++|.++|++|++|+|+  |.|++|+|+  |||++.+|.|++++..+++|+++|+
T Consensus         2 TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~--T~gera~D~--FyV~d~~g~kl~~~~~~~~l~~~L~   69 (75)
T cd04897           2 SVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATID--TDGDDAHQE--YYIRHKDGRTLSTEGERQRVIKCLE   69 (75)
T ss_pred             EEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEe--ecCceEEEE--EEEEcCCCCccCCHHHHHHHHHHHH
Confidence            5899999999999999999999999999999999  999999999  9999999999997767788888875

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.77  E-value=1.7e-18  Score=129.60  Aligned_cols=69  Identities=17%  Similarity=0.195  Sum_probs=63.3

Q ss_pred             eeEEEEeCCCccHHHHHHHHHHhCCceEEEEEeeccccCceEeeeeEEEEEcCCCCCCCchHHHHHHHHHHc
Q 019269          269 NPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLM  340 (343)
Q Consensus       269 ~~ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~~~T~g~~~~dv~~F~v~~~~g~~l~~~~~~~~l~~~L~  340 (343)
                      |+++|.|.|||||||+|+++|+++|++|++|||+-.|.|++++|+  ||| +.+|.++++++.++.|+++|+
T Consensus         1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~--Fyv-~~~g~kl~d~~~~~~L~~~L~   69 (75)
T cd04896           1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDL--FIV-QSDGKKIMDPKKQAALCARLR   69 (75)
T ss_pred             CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEE--EEE-eCCCCccCCHHHHHHHHHHHH
Confidence            479999999999999999999999999999999888999999999  999 899999987656788888775

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.74  E-value=2.8e-17  Score=123.04  Aligned_cols=73  Identities=19%  Similarity=0.367  Sum_probs=68.9

Q ss_pred             eEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEe-cCCCCCCChHHHHHHHHHHHHHHcC
Q 019269          176 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMELLQ  250 (343)
Q Consensus       176 ~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~-~~g~~i~~~~~~~~l~~~L~~~L~~  250 (343)
                      +|+|+|.|+||||||++|+++|+++|++|++|+|.  |.|+++.|+|||. .+|.++.++++.+.|+++|.++|.+
T Consensus         1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~--T~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~~al~~   74 (75)
T cd04897           1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATID--TDGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEAAIER   74 (75)
T ss_pred             CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEe--ecCceEEEEEEEEcCCCCccCCHHHHHHHHHHHHHHHhc
Confidence            58999999999999999999999999999999998  7899999999997 7899999998999999999998865

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.69  E-value=2.3e-16  Score=118.20  Aligned_cols=75  Identities=63%  Similarity=1.006  Sum_probs=68.3

Q ss_pred             EEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCC
Q 019269          177 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQP  251 (343)
Q Consensus       177 t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~~L~~~  251 (343)
                      |+|+|.++|||||||+|+++|+++|++|+.|+|.+.|.|+++.|+|||+.+|.++.++++.+.|+++|.+++..|
T Consensus         1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv~~~g~kl~d~~~~~~L~~~L~~~l~~~   75 (75)
T cd04896           1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIVQSDGKKIMDPKKQAALCARLREEMVCP   75 (75)
T ss_pred             CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEEeCCCCccCCHHHHHHHHHHHHHHhcCC
Confidence            579999999999999999999999999999999855689999999999777888988889999999999988653

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional

Probab=99.68  E-value=8.4e-16  Score=135.73  Aligned_cols=156  Identities=10%  Similarity=0.064  Sum_probs=109.4

Q ss_pred             CCeEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCCcc
Q 019269          174 PGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLR  253 (343)
Q Consensus       174 ~~~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~~L~~~~~  253 (343)
                      ..+.+|++.|+|||||++.|+++|+++||||.+++..  ..|+.+.-++.++.  .    +...++|+..|.. +.....
T Consensus         6 ~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t--~lgg~Fa~i~lvs~--~----~~~~~~le~~L~~-l~~~~~   76 (190)
T PRK11589          6 QHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLA--MLGEEFTFIMLLSG--S----WNAITLIESTLPL-KGAELD   76 (190)
T ss_pred             ccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhH--hhCCceEEEEEEeC--C----hhHHHHHHHHHHh-hhhhcC
Confidence            3678999999999999999999999999999999987  67888776677642  1    2255678777644 333333


Q ss_pred             ee--eec-CC-CCceeeeeeeEEEEeCCCccHHHHHHHHHHhCCceEEEEEeeccccCc--eEeeee--EEEEEcCCCCC
Q 019269          254 VT--VVS-RG-PDTELLVANPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGD--REWEVY--RVLLDEGDGLS  325 (343)
Q Consensus       254 ~~--~~~-~~-~~~~v~~~~~ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~~~T~g~--~~~dv~--~F~v~~~~g~~  325 (343)
                      +.  +.. .. ..........++|.+.|||||+++||++|+++|+||.+.+..  |.+.  ...+.|  .|.+.-|.|..
T Consensus        77 L~i~v~~~~~~~~~~~~~~~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~--~~~a~~~~~~lf~~~~~v~lP~~~~  154 (190)
T PRK11589         77 LLIVMKRTTARPRPAMPATVWVQVEVADSPHLIERFTALFDSHHMNIAELVSR--TQPAEGERPAQLHIQITAHSPASQD  154 (190)
T ss_pred             eEEEEEeccccccccCCceEEEEEEECCCCCHHHHHHHHHHHcCCChhheEEe--eecCCCCCcccEEEEEEEEcCCCCC
Confidence            32  211 11 011111245899999999999999999999999999999999  7774  555553  34455566655


Q ss_pred             CCc-hHHHHHHHHHHc
Q 019269          326 VPR-NKIEEGVWKLLM  340 (343)
Q Consensus       326 l~~-~~~~~~l~~~L~  340 (343)
                      +.. ....+.+.++|+
T Consensus       155 ~~~L~~~l~~l~~eL~  170 (190)
T PRK11589        155 AANIEQAFKALCTELN  170 (190)
T ss_pred             HHHHHHHHHHHHHHhC
Confidence            542 122456665553

>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.68  E-value=4.1e-16  Score=115.96  Aligned_cols=68  Identities=24%  Similarity=0.352  Sum_probs=62.9

Q ss_pred             eEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEe-cCCCCCCChHHHHHHHHHHH
Q 019269          176 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLW  245 (343)
Q Consensus       176 ~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~-~~g~~i~~~~~~~~l~~~L~  245 (343)
                      +|+|+|.++||||||++|+++|+++|++|+.|+|.  |.|+++.|+|||+ .+|.++.++++++.|+++|.
T Consensus         1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIs--T~Gerv~DvFyV~d~~g~kl~d~~~~~~l~~~L~   69 (72)
T cd04895           1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYIS--SDGGWFMDVFHVTDQLGNKLTDDSLIAYIEKSLG   69 (72)
T ss_pred             CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEe--ecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHhc
Confidence            58999999999999999999999999999999998  7999999999997 78899988888888888764

This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.64  E-value=2.4e-15  Score=113.79  Aligned_cols=72  Identities=72%  Similarity=1.152  Sum_probs=66.4

Q ss_pred             EEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEecCCCcccchhHHHHHHHHHHHHhcc
Q 019269           43 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGN  114 (343)
Q Consensus        43 ~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~~l~~  114 (343)
                      .+.|+++||||||++++++|+.+|+||++|+|+|+.+|+++|+|+|.++.+...++++++++++.|.++|.+
T Consensus         2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~~~~~~~~~~l~~~L~~~L~~   73 (76)
T cd04927           2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDARELLHTKKRREETYDYLRAVLGD   73 (76)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHch
Confidence            689999999999999999999999999999999988999999999999877755678999999999998865

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.63  E-value=2.5e-15  Score=112.73  Aligned_cols=71  Identities=31%  Similarity=0.339  Sum_probs=64.5

Q ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEecCCCccc-chhHHHHHHHHHHHHh
Q 019269           42 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLH-TRKRKEDTYEHLKTIL  112 (343)
Q Consensus        42 ~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~g~~~-~~~~~~~l~~~L~~~l  112 (343)
                      +.|.|+++||||||++++++|+.+|+||++|+|+|+.+|+++|+|+|+++.|... ++++++++++.|.++|
T Consensus         2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~~~l   73 (73)
T cd04900           2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREALEDAL   73 (73)
T ss_pred             EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCCChHHHHHHHHHHHHhhC
Confidence            5899999999999999999999999999999999988999999999999877654 6788999999887753

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.58  E-value=9.7e-15  Score=109.85  Aligned_cols=68  Identities=18%  Similarity=0.203  Sum_probs=61.2

Q ss_pred             eeEEEEeCCCccHHHHHHHHHHhCCceEEEEEeeccccCceEeeeeEEEEEcCC-CCCCCchHHHHHHHHHHc
Q 019269          269 NPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGD-GLSVPRNKIEEGVWKLLM  340 (343)
Q Consensus       269 ~~ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~~~T~g~~~~dv~~F~v~~~~-g~~l~~~~~~~~l~~~L~  340 (343)
                      |+++|.++|||||+++|+++|+++|+||++|+|.  |.|+++.|+  |||++++ |.++.++..+++|+++|+
T Consensus         1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~--t~~~~~~d~--f~V~d~~~~~~~~~~~~~~~i~~~L~   69 (74)
T cd04925           1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAW--THNGRLACV--IYVRDEETGAPIDDPIRLASIEDRLD   69 (74)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEE--EECCEEEEE--EEEEcCcCCCCCCCHHHHHHHHHHHH
Confidence            4799999999999999999999999999999999  999999999  9999998 888876545677777764

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional

Probab=99.58  E-value=8.5e-14  Score=122.99  Aligned_cols=161  Identities=9%  Similarity=0.077  Sum_probs=106.9

Q ss_pred             CCCEEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEecCCCcccchhHHHHHHHHHHHHhccccc
Q 019269           38 PSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMI  117 (343)
Q Consensus        38 ~~~~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~~l~~~~~  117 (343)
                      ...+++|+++|+||||+.++++++|+++||||++++...+ +|.+.-++.|..      ++..+++|+..|...-.... 
T Consensus         5 m~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~l-gg~Fa~i~lvs~------~~~~~~~le~~L~~l~~~~~-   76 (190)
T PRK11589          5 SQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAML-GEEFTFIMLLSG------SWNAITLIESTLPLKGAELD-   76 (190)
T ss_pred             cccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhh-CCceEEEEEEeC------ChhHHHHHHHHHHhhhhhcC-
Confidence            5688999999999999999999999999999999999887 666666677743      24567888887776322110 


Q ss_pred             ccccccccceeecccCCCCCCchHHHhhhcccCCCCCCCCCCCCCccEEEEEeCCCCCeEEEEEEECCcccHHHHHHHHH
Q 019269          118 SCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTL  197 (343)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~i~V~~~DrpGLl~~i~~~L  197 (343)
                              ..+         ..++...                 ..      .......+.++|++.||||++++++++|
T Consensus        77 --------L~i---------~v~~~~~-----------------~~------~~~~~~~~~v~v~G~DrPGIV~~vT~~l  116 (190)
T PRK11589         77 --------LLI---------VMKRTTA-----------------RP------RPAMPATVWVQVEVADSPHLIERFTALF  116 (190)
T ss_pred             --------eEE---------EEEeccc-----------------cc------cccCCceEEEEEEECCCCCHHHHHHHHH
Confidence                    111         0101000                 00      0111124799999999999999999999


Q ss_pred             HhCCeeEEEEEEEEeecCC--EEEEEEEE----e-cCCCCCCChHHHHHHHHHHHHHHcCCccee
Q 019269          198 KDYNIQVSYGRFSRRQRGN--CEIDLFIM----Q-ADGKKIVDPSKQNGLSSRLWMELLQPLRVT  255 (343)
Q Consensus       198 ~~~glnI~~A~i~t~t~g~--~~~d~F~v----~-~~g~~i~~~~~~~~l~~~L~~~L~~~~~~~  255 (343)
                      +++|+||.+-+-.  +.+.  ...+.|.+    . +.+.      ..+.|+++|+ .+.+++.++
T Consensus       117 a~~~iNI~~L~T~--~~~a~~~~~~lf~~~~~v~lP~~~------~~~~L~~~l~-~l~~eL~vd  172 (190)
T PRK11589        117 DSHHMNIAELVSR--TQPAEGERPAQLHIQITAHSPASQ------DAANIEQAFK-ALCTELNAQ  172 (190)
T ss_pred             HHcCCChhheEEe--eecCCCCCcccEEEEEEEEcCCCC------CHHHHHHHHH-HHHHHhCce
Confidence            9999999976654  4442  33344544    3 2222      2456777763 345554443

>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.58  E-value=2.2e-14  Score=107.58  Aligned_cols=71  Identities=24%  Similarity=0.329  Sum_probs=62.6

Q ss_pred             EEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEe-cCCCCCCChHHHHHHHHHHHHHH
Q 019269          177 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMEL  248 (343)
Q Consensus       177 t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~-~~g~~i~~~~~~~~l~~~L~~~L  248 (343)
                      +.|+|+++||||||++++++|+.+|+||++|+|+| +.++++.|+|+|. .++.++.++++++++++.|.++|
T Consensus         2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T-~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~~~l   73 (73)
T cd04900           2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFT-TRDGYALDTFVVLDPDGEPIGERERLARIREALEDAL   73 (73)
T ss_pred             EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEE-eCCCeEEEEEEEECCCCCCCChHHHHHHHHHHHHhhC
Confidence            68999999999999999999999999999999996 5568999999997 66777767778899999887653

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.57  E-value=3.1e-14  Score=107.68  Aligned_cols=71  Identities=23%  Similarity=0.371  Sum_probs=62.9

Q ss_pred             EEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEe-cCCCCCCChHHHHHHHHHHHHHHcC
Q 019269          178 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMELLQ  250 (343)
Q Consensus       178 ~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~-~~g~~i~~~~~~~~l~~~L~~~L~~  250 (343)
                      .++|+++||||||++++++|+++|+||++|+|.| |.++++.|+|+|. .++. ..+++++++++++|.++|.+
T Consensus         2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~T-t~~~~v~D~F~V~d~~~~-~~~~~~~~~l~~~L~~~L~~   73 (76)
T cd04927           2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVST-TPDGRVLDLFFITDAREL-LHTKKRREETYDYLRAVLGD   73 (76)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEE-CCCCEEEEEEEEeCCCCC-CCCHHHHHHHHHHHHHHHch
Confidence            6899999999999999999999999999999996 5889999999997 4444 45577889999999998865

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.57  E-value=2.7e-14  Score=107.46  Aligned_cols=71  Identities=23%  Similarity=0.296  Sum_probs=64.1

Q ss_pred             EEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEe-cC-CCCCCChHHHHHHHHHHHHHHc
Q 019269          177 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-AD-GKKIVDPSKQNGLSSRLWMELL  249 (343)
Q Consensus       177 t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~-~~-g~~i~~~~~~~~l~~~L~~~L~  249 (343)
                      |+|+|+++||||||++|+++|+++|+||++|+|+|  .|+++.|+|+|. .+ +.++.++++++++++.|.++|.
T Consensus         1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t--~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~l~   73 (74)
T cd04925           1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWT--HNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNVLR   73 (74)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEE--ECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHHhc
Confidence            58999999999999999999999999999999994  588999999997 55 7777778889999999988875

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains

Probab=99.52  E-value=1.3e-13  Score=101.21  Aligned_cols=66  Identities=23%  Similarity=0.328  Sum_probs=56.4

Q ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEecCCCcccchhHHHHHHHHHHHHh
Q 019269           42 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTIL  112 (343)
Q Consensus        42 ~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~~l  112 (343)
                      ..|.|+++||||||++++++|+.+|+||++|+|+|+.+|+++|+|+|.+.+|.     .-+.++..|.++|
T Consensus         2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~~~-----~~~~~~~~~~~~~   67 (68)
T cd04928           2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWKRG-----ETAALGHALQKEI   67 (68)
T ss_pred             EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCCcc-----chHHHHHHHHHhh
Confidence            47999999999999999999999999999999999999999999999997665     1235555555543

This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]

Probab=99.35  E-value=6.6e-12  Score=106.76  Aligned_cols=141  Identities=14%  Similarity=0.080  Sum_probs=99.2

Q ss_pred             CCeEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCCcc
Q 019269          174 PGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLR  253 (343)
Q Consensus       174 ~~~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~~L~~~~~  253 (343)
                      .++.+|++++.||||+...++++..++||||.++|+.  ..|+.+.-+..+.  |.    .+...+|+..| ..+..+..
T Consensus         3 ~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla--~~g~~~a~i~lis--gs----~dav~~le~~l-~~l~~~~~   73 (176)
T COG2716           3 EHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLA--MLGEEFAGIMLIS--GS----WDAVTLLEATL-PLLGAELD   73 (176)
T ss_pred             ccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHH--HhhcceeEEEEEe--eC----HHHHHHHHHHh-hcccccCC
Confidence            3568999999999999999999999999999999997  6787776444443  22    34566787776 44555444


Q ss_pred             ee--eecCCC-C-ceeeeeeeEEEEeCCCccHHHHHHHHHHhCCceEEEEEeeccccC--ceEeeeeEEEEEcCCCCCCC
Q 019269          254 VT--VVSRGP-D-TELLVANPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIG--DREWEVYRVLLDEGDGLSVP  327 (343)
Q Consensus       254 ~~--~~~~~~-~-~~v~~~~~ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~~~T~g--~~~~dv~~F~v~~~~g~~l~  327 (343)
                      +.  +.+.+. + +.-...++++|.+.|||||+.++|++|.++|+||.+....  |.-  ..-...  |.+.-.-+.|.+
T Consensus        74 L~v~m~rt~~~~~~a~~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~--~~~a~~s~~~l--fha~it~~lPa~  149 (176)
T COG2716          74 LLVVMKRTGAHPTPANPAPVWVYVDANDRPGIVEEFTALFDGHGINIENLVSR--TYPAPGSSAPL--FHAQITARLPAN  149 (176)
T ss_pred             eEEEEeecCCCccCCCCceEEEEEEecCCccHHHHHHHHHHhcCCchhhceee--eeecCCCCccc--eehhhhccCCCc
Confidence            43  222221 1 1222345899999999999999999999999999999887  432  222233  555433444544

>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.33  E-value=1.4e-11  Score=92.04  Aligned_cols=67  Identities=34%  Similarity=0.422  Sum_probs=58.5

Q ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEecCCCcccchhHHHHHHHHHH
Q 019269           42 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLK  109 (343)
Q Consensus        42 ~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~  109 (343)
                      +.|.|+++|+||+|++++++|+.+|+||++|+++|. +++++|+|+|.++++...++++++++++.|-
T Consensus         2 tri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~-~~~~~d~f~v~~~~~~~~~~~~~~~l~~~l~   68 (72)
T cd04926           2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQ-GDMAVNVFYVTDANGNPVDPKTIEAVRQEIG   68 (72)
T ss_pred             eEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecC-CCeEEEEEEEECCCCCcCCHHHHHHHHHHhc
Confidence            589999999999999999999999999999999986 7799999999998776556677777776653

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.32  E-value=1.4e-11  Score=92.09  Aligned_cols=67  Identities=22%  Similarity=0.266  Sum_probs=60.1

Q ss_pred             eeEEEEeCCCccHHHHHHHHHHhCCceEEEEEeeccccCceEeeeeEEEEEcCCCCCCCchHHHHHHHHHHc
Q 019269          269 NPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLM  340 (343)
Q Consensus       269 ~~ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~~~T~g~~~~dv~~F~v~~~~g~~l~~~~~~~~l~~~L~  340 (343)
                      +.++|.++||||+|++|+.+|+++|+||.+|++.  |.++.+.|+  |+|.+++|.+++++ ..++|++.|-
T Consensus         2 tri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~--t~~~~~~d~--f~v~~~~~~~~~~~-~~~~l~~~l~   68 (72)
T cd04926           2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRAEIS--TQGDMAVNV--FYVTDANGNPVDPK-TIEAVRQEIG   68 (72)
T ss_pred             eEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEe--cCCCeEEEE--EEEECCCCCcCCHH-HHHHHHHHhc
Confidence            3689999999999999999999999999999999  888899999  99999999988544 6788888873

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK00227 glnD PII uridylyl-transferase; Provisional

Probab=99.32  E-value=3e-11  Score=125.38  Aligned_cols=144  Identities=15%  Similarity=0.142  Sum_probs=112.9

Q ss_pred             EEEEEEE-CCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEec-CCCCCCChHHHHHHHHHHHHHHcCCcce
Q 019269          177 TLVQIVC-QDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQA-DGKKIVDPSKQNGLSSRLWMELLQPLRV  254 (343)
Q Consensus       177 t~i~V~~-~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~-~g~~i~~~~~~~~l~~~L~~~L~~~~~~  254 (343)
                      -.++|.. +|++|++.+++++|+.++++|.+|++.  + +|.+...|.|.+ .|.+ .++   ..+++.+..++.+.+.+
T Consensus       547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~--~-~~~~~~~~~v~~~~~~~-~~~---~~~~~~~~~~~~~~~~~  619 (693)
T PRK00227        547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMV--A-NGPWSAEFDVRANGPQD-FDP---QEFLQAYKSGVYSELPD  619 (693)
T ss_pred             CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEe--c-CCceEEEEEEecCCCCC-CCh---HHHHHHHHHhhcCCCCc
Confidence            4788888 999999999999999999999999997  4 568888999984 4555 334   46777777777776554


Q ss_pred             eeecCCCCceeeeeeeEEEEeCCCccHHHHHHHHHHhCCceEEEEEeeccccCceEeeeeEEEEEcCCCCCCCchHHHHH
Q 019269          255 TVVSRGPDTELLVANPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEG  334 (343)
Q Consensus       255 ~~~~~~~~~~v~~~~~ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~~~T~g~~~~dv~~F~v~~~~g~~l~~~~~~~~  334 (343)
                      .  ..+++....+.+++||++.||||+|+.|+++|.    .|.+|+++  |.|..+.|+  ||+..  |  .+..+....
T Consensus       620 ~--~~~~~~~~~~~~~~e~r~~dr~g~l~~~~~~l~----~~~~~~~~--~~g~~~~~~--~~~~~--~--~~r~~~~~~  685 (693)
T PRK00227        620 P--APGITATFWHGNILEVRTEDRRGALGALLGVLP----DLLWITAS--TPGATMIVQ--AALKP--G--FDRATVERD  685 (693)
T ss_pred             c--cCCCCceEeeCcEEEEEeCccccHHHHHHHHhh----hhhhHhhc--CCCcceEEE--EEecC--c--ccHHHHHHH
Confidence            2  223334445668999999999999999999999    89999999  999999999  99982  2  233445566


Q ss_pred             HHHHHcC
Q 019269          335 VWKLLMG  341 (343)
Q Consensus       335 l~~~L~~  341 (343)
                      |.+.|.|
T Consensus       686 ~~~~~~~  692 (693)
T PRK00227        686 VTRVLAG  692 (693)
T ss_pred             HHHHHhc
Confidence            6666544

>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains

Probab=99.31  E-value=1.9e-11  Score=89.75  Aligned_cols=65  Identities=15%  Similarity=0.242  Sum_probs=53.9

Q ss_pred             EEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEe-cCCCCCCChHHHHHHHHHHHHHH
Q 019269          177 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMEL  248 (343)
Q Consensus       177 t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~-~~g~~i~~~~~~~~l~~~L~~~L  248 (343)
                      ..|.|+++||||||++++++|+.+|+||++|+|+| +.+|.++|+|+|. .+|..   +   +.|+++|+++|
T Consensus         2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~t-t~dG~~LDtF~V~d~~~~~---~---~~~~~~~~~~~   67 (68)
T cd04928           2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFS-TDDGLALDIFVVTGWKRGE---T---AALGHALQKEI   67 (68)
T ss_pred             EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEE-cCCCeEEEEEEEecCCccc---h---HHHHHHHHHhh
Confidence            57899999999999999999999999999999998 6778999999997 44432   1   35666666654

This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]

Probab=99.30  E-value=1.2e-11  Score=105.22  Aligned_cols=165  Identities=12%  Similarity=0.125  Sum_probs=111.0

Q ss_pred             CCEEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEecCCCcccchhHHHHHHHHHHHHhcccccc
Q 019269           39 SDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMIS  118 (343)
Q Consensus        39 ~~~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~~l~~~~~~  118 (343)
                      +.+++|++++.||||+...++++..++||||+++++.... +.+.-+..+.-      +|+...+++..|.. +..+.+ 
T Consensus         3 ~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g-~~~a~i~lisg------s~dav~~le~~l~~-l~~~~~-   73 (176)
T COG2716           3 EHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLG-EEFAGIMLISG------SWDAVTLLEATLPL-LGAELD-   73 (176)
T ss_pred             ccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhh-cceeEEEEEee------CHHHHHHHHHHhhc-ccccCC-
Confidence            5679999999999999999999999999999999999974 44444444442      47778888888866 433220 


Q ss_pred             cccccccceeecccCCCCCCchHHHhhhcccCCCCCCCCCCCCCccEEEEEeCCCCCeEEEEEEECCcccHHHHHHHHHH
Q 019269          119 CDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLK  198 (343)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~i~V~~~DrpGLl~~i~~~L~  198 (343)
                             ..+.        +.+..                  ..+      .......+.+.|.+.||||++.++++.|.
T Consensus        74 -------L~v~--------m~rt~------------------~~~------~~a~~~~v~v~v~a~DrpgIv~~~T~lf~  114 (176)
T COG2716          74 -------LLVV--------MKRTG------------------AHP------TPANPAPVWVYVDANDRPGIVEEFTALFD  114 (176)
T ss_pred             -------eEEE--------EeecC------------------CCc------cCCCCceEEEEEEecCCccHHHHHHHHHH
Confidence                   1110        01100                  001      12344568999999999999999999999


Q ss_pred             hCCeeEEEEEEEEeecCCEEEEEEEEe-cCCCCCCChHHHHHHHHHHHHHHcCCcce
Q 019269          199 DYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMELLQPLRV  254 (343)
Q Consensus       199 ~~glnI~~A~i~t~t~g~~~~d~F~v~-~~g~~i~~~~~~~~l~~~L~~~L~~~~~~  254 (343)
                      .+|+||++-.-.+....+.-...|+.+ .-.-+..  -....|++++ ++|...+.+
T Consensus       115 ~~~inie~L~~~~~~a~~s~~~lfha~it~~lPa~--~~i~~l~~~f-~al~~~L~v  168 (176)
T COG2716         115 GHGINIENLVSRTYPAPGSSAPLFHAQITARLPAN--LSISALRDAF-EALCDELNV  168 (176)
T ss_pred             hcCCchhhceeeeeecCCCCccceehhhhccCCCc--CcHHHHHHHH-HHHHHhhcc
Confidence            999999976654333334455568775 2233322  2345677776 445555544

>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.25  E-value=7.8e-11  Score=86.97  Aligned_cols=69  Identities=39%  Similarity=0.514  Sum_probs=62.0

Q ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEecCCCcccchhHHHHHHHHHHHH
Q 019269           42 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTI  111 (343)
Q Consensus        42 ~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~~  111 (343)
                      +.|.|.++|+||+|++++++|+.+|+||.++++.+. +++++|+|++.++.+...+.+++++|++.|.++
T Consensus         1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~-~~~~~~~f~i~~~~~~~~~~~~~~~i~~~l~~~   69 (70)
T cd04899           1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATL-GERAEDVFYVTDADGQPLDPERQEALRAALGEA   69 (70)
T ss_pred             CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEec-CCEEEEEEEEECCCCCcCCHHHHHHHHHHHHhh
Confidence            478999999999999999999999999999999986 569999999999887766778999999988764

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK00227 glnD PII uridylyl-transferase; Provisional

Probab=99.20  E-value=4.9e-10  Score=116.49  Aligned_cols=147  Identities=12%  Similarity=0.081  Sum_probs=116.0

Q ss_pred             CEEEEEEEE-cCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEecCCCcccchhHHHHHHHHHHHHhcccccc
Q 019269           40 DVFLLKLSC-YDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMIS  118 (343)
Q Consensus        40 ~~~~I~V~~-~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~~l~~~~~~  118 (343)
                      ..-.++|.. +|++|++.+++++|+.++++|.+|++.+  +|.++..|.|.+..|..+++   ..+++.+..++.+..+ 
T Consensus       545 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~--~~~~~~~~~v~~~~~~~~~~---~~~~~~~~~~~~~~~~-  618 (693)
T PRK00227        545 EDGFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA--NGPWSAEFDVRANGPQDFDP---QEFLQAYKSGVYSELP-  618 (693)
T ss_pred             cCCeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec--CCceEEEEEEecCCCCCCCh---HHHHHHHHHhhcCCCC-
Confidence            335788888 9999999999999999999999999988  78888999999988887776   4777788887765431 


Q ss_pred             cccccccceeecccCCCCCCchHHHhhhcccCCCCCCCCCCCCCccEEEEEeCCCCCeEEEEEEECCcccHHHHHHHHHH
Q 019269          119 CDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLK  198 (343)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~i~V~~~DrpGLl~~i~~~L~  198 (343)
                               .          ..                    ..+|.+.+..      ++++|.+.||+|+|+.++++|.
T Consensus       619 ---------~----------~~--------------------~~~~~~~~~~------~~~e~r~~dr~g~l~~~~~~l~  653 (693)
T PRK00227        619 ---------D----------PA--------------------PGITATFWHG------NILEVRTEDRRGALGALLGVLP  653 (693)
T ss_pred             ---------c----------cc--------------------CCCCceEeeC------cEEEEEeCccccHHHHHHHHhh
Confidence                     0          00                    1244555542      7999999999999999999999


Q ss_pred             hCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcC
Q 019269          199 DYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQ  250 (343)
Q Consensus       199 ~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~~L~~  250 (343)
                          +|..|++.  |.|..++|.|++...      . ....++.++..+|.+
T Consensus       654 ----~~~~~~~~--~~g~~~~~~~~~~~~------~-~r~~~~~~~~~~~~~  692 (693)
T PRK00227        654 ----DLLWITAS--TPGATMIVQAALKPG------F-DRATVERDVTRVLAG  692 (693)
T ss_pred             ----hhhhHhhc--CCCcceEEEEEecCc------c-cHHHHHHHHHHHHhc
Confidence                78889988  799999999999721      1 234677777766643

>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.19  E-value=1.7e-10  Score=85.08  Aligned_cols=67  Identities=28%  Similarity=0.424  Sum_probs=60.5

Q ss_pred             eeEEEEeCCCccHHHHHHHHHHhCCceEEEEEeeccccCceEeeeeEEEEEcCCCCCCCchHHHHHHHHHHc
Q 019269          269 NPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLM  340 (343)
Q Consensus       269 ~~ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~~~T~g~~~~dv~~F~v~~~~g~~l~~~~~~~~l~~~L~  340 (343)
                      |.+.|.+.||||+|++|+++|+++|++|.++++.  +.++.+.|+  |++.+++|.+.+.+ ..++|+++|.
T Consensus         1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~--~~~~~~~~~--f~i~~~~~~~~~~~-~~~~i~~~l~   67 (70)
T cd04899           1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIA--TLGERAEDV--FYVTDADGQPLDPE-RQEALRAALG   67 (70)
T ss_pred             CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEE--ecCCEEEEE--EEEECCCCCcCCHH-HHHHHHHHHH
Confidence            4689999999999999999999999999999999  888899999  99999999996544 5788888875

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.01  E-value=3.5e-10  Score=82.99  Aligned_cols=73  Identities=74%  Similarity=1.132  Sum_probs=65.7

Q ss_pred             eeEEEEeCCCccHHHHHHHHHHhCCceEEEEEeeccccCceEeeeeEEEEEcCCCCCCC----chHHHHHHHHHHcCC
Q 019269          269 NPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVP----RNKIEEGVWKLLMGW  342 (343)
Q Consensus       269 ~~ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~~~T~g~~~~dv~~F~v~~~~g~~l~----~~~~~~~l~~~L~~~  342 (343)
                      |.+|+++.-||-.+||+|-+|+.+|+.|++|.|.+...+++...+|+|++.+..+- ++    ..++.++++..||||
T Consensus         1 nPVElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~~~~-~~~~~~r~~i~drv~~~lmgw   77 (77)
T cd04898           1 NPVELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEHDRL-KLGGRQRSKVVDRVTKTLMGW   77 (77)
T ss_pred             CcccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCCCcc-ccchHHHHHHHHHHHHHHhcC
Confidence            35899999999999999999999999999999998899999999999999776444 66    566889999999998

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

Probab=98.99  E-value=5.9e-09  Score=76.48  Aligned_cols=68  Identities=35%  Similarity=0.520  Sum_probs=59.9

Q ss_pred             EEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEecCCCcccchhHHHHHHHHHHHH
Q 019269           43 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTI  111 (343)
Q Consensus        43 ~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~~  111 (343)
                      .|.|.++|+||+|++++++|+.+|++|.++++++..+ +..+.|++..+.+...+++++++|++.|..+
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~   69 (70)
T cd04873           2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGE-RALDVFYVTDSDGRPLDPERIARLEEALEDA   69 (70)
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCC-EEEEEEEEECCCCCcCCHHHHHHHHHHHHhh
Confidence            6889999999999999999999999999999999754 9999999998776555667889999888764

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t

>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

Probab=98.89  E-value=1.5e-08  Score=74.23  Aligned_cols=66  Identities=27%  Similarity=0.353  Sum_probs=58.2

Q ss_pred             eEEEEeCCCccHHHHHHHHHHhCCceEEEEEeeccccCceEeeeeEEEEEcCCCCCCCchHHHHHHHHHHc
Q 019269          270 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLM  340 (343)
Q Consensus       270 ~ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~~~T~g~~~~dv~~F~v~~~~g~~l~~~~~~~~l~~~L~  340 (343)
                      .+.|.++|+||+|++|+.+|+++|++|.++.+.  +.+++..++  |++.++++.+.+++ ..++|++.|.
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~--~~~~~~~~~--~~v~~~~~~~~~~~-~~~~l~~~l~   67 (70)
T cd04873           2 VVEVYAPDRPGLLADITRVLADLGLNIHDARIS--TTGERALDV--FYVTDSDGRPLDPE-RIARLEEALE   67 (70)
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEe--ecCCEEEEE--EEEECCCCCcCCHH-HHHHHHHHHH
Confidence            578999999999999999999999999999999  887788899  99999988875544 5788888875

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t

>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A

Probab=98.71  E-value=1.8e-07  Score=70.51  Aligned_cols=65  Identities=22%  Similarity=0.293  Sum_probs=53.1

Q ss_pred             EEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEecCCCcccchhHHHHHHHHHHHHh
Q 019269           41 VFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTIL  112 (343)
Q Consensus        41 ~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~~l  112 (343)
                      +.+|++.|+||||+++.++++|+++||||.+.+..+. +|.+.-.+.|..+      +...+++++.|.+..
T Consensus         2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~-~~~f~~~~~v~~~------~~~~~~l~~~L~~l~   66 (76)
T PF13740_consen    2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVL-GGRFTLIMLVSIP------EDSLERLESALEELA   66 (76)
T ss_dssp             EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEE-TTEEEEEEEEEES------HHHHHHHHHHHHHHH
T ss_pred             EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEE-cCeEEEEEEEEeC------cccHHHHHHHHHHHH
Confidence            5789999999999999999999999999999999997 6777777877753      557788888888843

>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A

Probab=98.65  E-value=3.1e-07  Score=69.23  Aligned_cols=64  Identities=14%  Similarity=0.166  Sum_probs=50.6

Q ss_pred             eEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHH
Q 019269          176 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWME  247 (343)
Q Consensus       176 ~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~~  247 (343)
                      +.+|++.|+||||+++.++++|+++|+||.+.+..  +.++.+.-.+.++.+      ++..++|+++|.+.
T Consensus         2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~--~~~~~f~~~~~v~~~------~~~~~~l~~~L~~l   65 (76)
T PF13740_consen    2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQA--VLGGRFTLIMLVSIP------EDSLERLESALEEL   65 (76)
T ss_dssp             EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEE--EETTEEEEEEEEEES------HHHHHHHHHHHHHH
T ss_pred             EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEE--EEcCeEEEEEEEEeC------cccHHHHHHHHHHH
Confidence            57899999999999999999999999999999998  677888877777632      34667888887654

>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=98.47  E-value=5.6e-07  Score=63.77  Aligned_cols=67  Identities=21%  Similarity=0.275  Sum_probs=57.7

Q ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEecCCCcccchhHHHHHHHHHHHH
Q 019269           42 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTI  111 (343)
Q Consensus        42 ~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~~  111 (343)
                      ++|+|.|||+.||-.++++++...|++|..++++| ++.|++-+|+|......  -+-+|+.|+++|.++
T Consensus         1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sT-DGkWCyiv~wVv~~~~~--~~~rW~lLK~RL~~~   67 (69)
T cd04894           1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDST-DGRWCYIVFWVVPRPPS--IKVRWDLLKNRLMSA   67 (69)
T ss_pred             CEEEEeCCCccCcccHHHHHHHHhceEEEeccccc-CCcEEEEEEEEecCCCC--CcccHHHHHHHHHhc
Confidence            47999999999999999999999999999999999 57899999999875433  245788998888763

This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=98.46  E-value=1.2e-06  Score=66.16  Aligned_cols=62  Identities=15%  Similarity=0.166  Sum_probs=49.5

Q ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEecCCCcccchhHHHHHHHHHHH
Q 019269           42 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT  110 (343)
Q Consensus        42 ~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~  110 (343)
                      ++|++.|+||||+.+++++.|+++|+||.+++.+.. +|.+.-...+..+      +...+.|++.|..
T Consensus         2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~-~~~F~m~~~~~~~------~~~~~~l~~~l~~   63 (77)
T cd04893           2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAIL-GTEFALTMLVEGS------WDAIAKLEAALPG   63 (77)
T ss_pred             EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEE-cCEEEEEEEEEec------cccHHHHHHHHHH
Confidence            689999999999999999999999999999999995 6766555555432      1235677777766

This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int

>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold

Probab=98.45  E-value=3.1e-06  Score=61.06  Aligned_cols=62  Identities=27%  Similarity=0.491  Sum_probs=47.3

Q ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCC-EEEEEEEEecCCCcccchhHHHHHHHHHHH
Q 019269           42 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDG-KVMDLFFVTDTRELLHTRKRKEDTYEHLKT  110 (343)
Q Consensus        42 ~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g-~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~  110 (343)
                      +.|.|.++||||+|++++++|+++|+||..+.+++..++ ..+.++...+       ....+.+.+.|++
T Consensus         1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~   63 (66)
T PF01842_consen    1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVD-------EEDLEKLLEELEA   63 (66)
T ss_dssp             EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEE-------GHGHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECC-------CCCHHHHHHHHHc
Confidence            578999999999999999999999999999999997662 4434343332       4445666666655

ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....

>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=98.39  E-value=1e-06  Score=66.19  Aligned_cols=52  Identities=19%  Similarity=0.212  Sum_probs=43.8

Q ss_pred             eEEEEeCCCccHHHHHHHHHHhCCceEEEEEeeccccCceEeeeeEEEEEcCCCCC
Q 019269          270 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLS  325 (343)
Q Consensus       270 ~ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~~~T~g~~~~dv~~F~v~~~~g~~  325 (343)
                      .++|.|+||||++++|+++|+++|+||.+.+..  +.+++..=.  |.+.-+++..
T Consensus         1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~--~~~~~f~~~--~~v~~p~~~~   52 (75)
T cd04870           1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQA--VIHGRLSLG--ILVQIPDSAD   52 (75)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccE--EEcCeeEEE--EEEEcCCCCC
Confidence            378999999999999999999999999999988  888765555  7777666533

The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=98.38  E-value=1.2e-06  Score=65.77  Aligned_cols=61  Identities=15%  Similarity=0.126  Sum_probs=46.2

Q ss_pred             EEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEe-cCCCCCCChHHHHHHHHHHHH
Q 019269          178 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWM  246 (343)
Q Consensus       178 ~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~-~~g~~i~~~~~~~~l~~~L~~  246 (343)
                      +++|.|+||||++++++++|+++|+||.+.+..  +.++.+.-.|.+. +.+.      ..+.|+++|..
T Consensus         1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~--~~~~~f~~~~~v~~p~~~------~~~~l~~~l~~   62 (75)
T cd04870           1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQA--VIHGRLSLGILVQIPDSA------DSEALLKDLLF   62 (75)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccE--EEcCeeEEEEEEEcCCCC------CHHHHHHHHHH
Confidence            378999999999999999999999999988755  4556666666665 3321      23567777644

The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=98.38  E-value=2.6e-06  Score=64.38  Aligned_cols=66  Identities=14%  Similarity=0.174  Sum_probs=47.9

Q ss_pred             EEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCC
Q 019269          177 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQP  251 (343)
Q Consensus       177 t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~~L~~~  251 (343)
                      ++|++.|+||||++++|+++|+++|+||.+++.+  ..++.+.-...+..+  .    ...+.|++.|.+ +..+
T Consensus         2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~--~~~~~F~m~~~~~~~--~----~~~~~l~~~l~~-~~~~   67 (77)
T cd04893           2 LVISALGTDRPGILNELTRAVSESGCNILDSRMA--ILGTEFALTMLVEGS--W----DAIAKLEAALPG-LARR   67 (77)
T ss_pred             EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceee--EEcCEEEEEEEEEec--c----ccHHHHHHHHHH-HHHH
Confidence            6899999999999999999999999999999987  355565433344422  1    124567777654 4433

This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int

>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold

Probab=98.34  E-value=8e-06  Score=58.84  Aligned_cols=35  Identities=26%  Similarity=0.357  Sum_probs=33.0

Q ss_pred             EEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEE
Q 019269          177 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSR  211 (343)
Q Consensus       177 t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t  211 (343)
                      |.|.|.++||||+|++++++|+++|+||.++...+
T Consensus         1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~   35 (66)
T PF01842_consen    1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSS   35 (66)
T ss_dssp             EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEe
Confidence            57899999999999999999999999999999985

ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....

>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase)

Probab=98.12  E-value=2.2e-05  Score=58.52  Aligned_cols=34  Identities=12%  Similarity=0.221  Sum_probs=31.5

Q ss_pred             EEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEE
Q 019269          178 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSR  211 (343)
Q Consensus       178 ~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t  211 (343)
                      +|+|.|+||||++++|+++|+++|+||.+.+..+
T Consensus         1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~   34 (74)
T cd04875           1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFV   34 (74)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeee
Confidence            4789999999999999999999999999988764

This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase)

Probab=98.04  E-value=1.5e-05  Score=59.46  Aligned_cols=64  Identities=23%  Similarity=0.260  Sum_probs=45.3

Q ss_pred             EEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCC-CEEEEEEEEecCCCcccchhHHHHHHHHHHH
Q 019269           43 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPD-GKVMDLFFVTDTRELLHTRKRKEDTYEHLKT  110 (343)
Q Consensus        43 ~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~-g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~  110 (343)
                      +|+|.|+||||++++++++|+++|+||.+.+.++... +.+.-.+.+..+.+    ....+.+++.|..
T Consensus         1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~~~----~~~~~~l~~~l~~   65 (74)
T cd04875           1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELEGF----DLSREALEAAFAP   65 (74)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeCCC----CCCHHHHHHHHHH
Confidence            4789999999999999999999999999999987433 33222233322211    1236778877777

This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein

Probab=98.02  E-value=1.5e-05  Score=61.61  Aligned_cols=64  Identities=13%  Similarity=0.153  Sum_probs=46.4

Q ss_pred             EEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHHHH
Q 019269          177 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWM  246 (343)
Q Consensus       177 t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~  246 (343)
                      .+|++.|+||||++++|+++|+++|+||.+.+..  +.++.+.-.+.+...+..    ...+.|++.|..
T Consensus         2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~--~~~~~f~~~~~v~~~~~~----~~~~~L~~~l~~   65 (88)
T cd04872           2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQT--IMDGYFTMIMIVDISESN----LDFAELQEELEE   65 (88)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhH--hhCCccEEEEEEEeCCCC----CCHHHHHHHHHH
Confidence            5789999999999999999999999999988876  455555544555522101    123567777654

This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein

Probab=97.98  E-value=2.8e-05  Score=60.12  Aligned_cols=66  Identities=20%  Similarity=0.257  Sum_probs=50.9

Q ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEecCCCcccchhHHHHHHHHHHHHh
Q 019269           42 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTIL  112 (343)
Q Consensus        42 ~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~~l  112 (343)
                      ..|++.|+|+||++++++++|+.+|+||.+.+.++. ++.+.-.+.+..+. .   ....+.+++.|....
T Consensus         2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~-~~~f~~~~~v~~~~-~---~~~~~~L~~~l~~l~   67 (88)
T cd04872           2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIM-DGYFTMIMIVDISE-S---NLDFAELQEELEELG   67 (88)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhh-CCccEEEEEEEeCC-C---CCCHHHHHHHHHHHH
Confidence            578999999999999999999999999999999885 66665556665432 0   123567888777733

This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=97.97  E-value=4.1e-05  Score=57.87  Aligned_cols=34  Identities=21%  Similarity=0.346  Sum_probs=31.6

Q ss_pred             EEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEE
Q 019269          178 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSR  211 (343)
Q Consensus       178 ~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t  211 (343)
                      +|+|.|+|+||++++|+++|+++|+||.+.+..+
T Consensus         1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~   34 (81)
T cd04869           1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTET   34 (81)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeee
Confidence            4789999999999999999999999999998874

This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in

>COG4747 ACT domain-containing protein [General function prediction only]

Probab=97.95  E-value=0.001  Score=53.54  Aligned_cols=112  Identities=18%  Similarity=0.154  Sum_probs=76.0

Q ss_pred             EEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEecCCCcccchhHHHHHHHHHHHHhcccccccccc
Q 019269           43 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMISCDVE  122 (343)
Q Consensus        43 ~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~~l~~~~~~~~~~  122 (343)
                      .|.|...|+||=|+.++.+|..+|+||..-.|--+ +.+-+--..|..       ++   .-.+.|++    .       
T Consensus         5 QISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt-~dFGIiRmvV~~-------~d---~A~~~Lee----~-------   62 (142)
T COG4747           5 QISVFLENKPGRLASVANKLKEAGINIRAFTIADT-GDFGIIRMVVDR-------PD---EAHSVLEE----A-------   62 (142)
T ss_pred             EEEEEecCCcchHHHHHHHHHHcCCceEEEEeccc-cCcceEEEEcCC-------hH---HHHHHHHH----C-------
Confidence            58899999999999999999999999986555432 333322233322       11   11111211    0       


Q ss_pred             cccceeecccCCCCCCchHHHhhhcccCCCCCCCCCCCCCccEEEEEeCCCCCeEEEEEEECCcccHHHHHHHHHHhCCe
Q 019269          123 MVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNI  202 (343)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~i~V~~~DrpGLl~~i~~~L~~~gl  202 (343)
                                            .|                  .|.+.       -++-|...|+||=|+.|+.+|.++++
T Consensus        63 ----------------------gF------------------~Vr~~-------dVlaVEmeD~PG~l~~I~~vl~d~di   95 (142)
T COG4747          63 ----------------------GF------------------TVRET-------DVLAVEMEDVPGGLSRIAEVLGDADI   95 (142)
T ss_pred             ----------------------Cc------------------EEEee-------eEEEEEecCCCCcHHHHHHHHhhcCc
Confidence                                  01                  12221       37888899999999999999999999


Q ss_pred             eEEEEEEEEeecCCEEEEEEEE
Q 019269          203 QVSYGRFSRRQRGNCEIDLFIM  224 (343)
Q Consensus       203 nI~~A~i~t~t~g~~~~d~F~v  224 (343)
                      |+..+..++ +..+.++-+|.+
T Consensus        96 NldYiYAFv-~ek~KAlli~r~  116 (142)
T COG4747          96 NLDYIYAFV-TEKQKALLIVRV  116 (142)
T ss_pred             Cceeeeeee-ecCceEEEEEEh
Confidence            999999987 455677754443

>PRK00194 hypothetical protein; Validated

Probab=97.94  E-value=3.6e-05  Score=59.60  Aligned_cols=65  Identities=22%  Similarity=0.325  Sum_probs=49.5

Q ss_pred             EEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEecCCCcccchhHHHHHHHHHHH
Q 019269           41 VFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT  110 (343)
Q Consensus        41 ~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~  110 (343)
                      .+.|+|.|+|+||++++++++|+.+|+||.+.+..+. +|.+.-.+.+..+. .   +...+.+++.|..
T Consensus         3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~-~~~~~~~~~v~~~~-~---~~~~~~l~~~l~~   67 (90)
T PRK00194          3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIM-DGYFTMIMLVDISE-S---KKDFAELKEELEE   67 (90)
T ss_pred             eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhh-CCeeEEEEEEEecC-C---CCCHHHHHHHHHH
Confidence            6799999999999999999999999999999888874 66665555554331 1   1124677777766

>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=97.93  E-value=8.8e-05  Score=56.03  Aligned_cols=63  Identities=17%  Similarity=0.207  Sum_probs=47.7

Q ss_pred             EEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCC-----CEEEEEEEEecCCCcccchhHHHHHHHHHHH
Q 019269           43 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPD-----GKVMDLFFVTDTRELLHTRKRKEDTYEHLKT  110 (343)
Q Consensus        43 ~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~-----g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~  110 (343)
                      +|+|.|+|+||++++|++.|+.+|+||.+.+..+...     +.+.-.+.+..+.+     ...+.+++.|+.
T Consensus         1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~~-----~~~~~l~~~l~~   68 (81)
T cd04869           1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPAG-----TDLDALREELEE   68 (81)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCCC-----CCHHHHHHHHHH
Confidence            3789999999999999999999999999999988641     44444455554321     125677777777

This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in

>PRK00194 hypothetical protein; Validated

Probab=97.91  E-value=4.4e-05  Score=59.11  Aligned_cols=69  Identities=12%  Similarity=0.161  Sum_probs=47.5

Q ss_pred             eEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCC
Q 019269          176 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQP  251 (343)
Q Consensus       176 ~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~~L~~~  251 (343)
                      .++++|.++||||++++++++|+++|+||.+.+-.  +.++.+.-.+.+.-.+.+.    ..+.|++.|.+ +.+.
T Consensus         3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~--~~~~~~~~~~~v~~~~~~~----~~~~l~~~l~~-l~~~   71 (90)
T PRK00194          3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQT--IMDGYFTMIMLVDISESKK----DFAELKEELEE-LGKE   71 (90)
T ss_pred             eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhH--hhCCeeEEEEEEEecCCCC----CHHHHHHHHHH-HHHH
Confidence            57999999999999999999999999999988765  4555554444444211111    23566666644 4443

>COG4747 ACT domain-containing protein [General function prediction only]

Probab=97.84  E-value=0.00019  Score=57.74  Aligned_cols=99  Identities=16%  Similarity=0.145  Sum_probs=69.2

Q ss_pred             EEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCCcceeee
Q 019269          178 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLRVTVV  257 (343)
Q Consensus       178 ~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~~L~~~~~~~~~  257 (343)
                      .|+|...++||=|..++..|+++|+||..-.|.  ..|+.-.--..|+       +++.   -.+.|+++          
T Consensus         5 QISvFlENk~GRL~~~~~~L~eagINiRA~tiA--dt~dFGIiRmvV~-------~~d~---A~~~Lee~----------   62 (142)
T COG4747           5 QISVFLENKPGRLASVANKLKEAGINIRAFTIA--DTGDFGIIRMVVD-------RPDE---AHSVLEEA----------   62 (142)
T ss_pred             EEEEEecCCcchHHHHHHHHHHcCCceEEEEec--cccCcceEEEEcC-------ChHH---HHHHHHHC----------
Confidence            678889999999999999999999999977776  2333222112222       1211   12233221          


Q ss_pred             cCCCCceeeeeeeEEEEeCCCccHHHHHHHHHHhCCceEEEEEee
Q 019269          258 SRGPDTELLVANPVELSGKGRPLVFHDITLALKMLDICIFSAEIG  302 (343)
Q Consensus       258 ~~~~~~~v~~~~~ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~  302 (343)
                        +.  .+....++-|..+|+||=|+.|+.+|.++++|+..+-.-
T Consensus        63 --gF--~Vr~~dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAF  103 (142)
T COG4747          63 --GF--TVRETDVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAF  103 (142)
T ss_pred             --Cc--EEEeeeEEEEEecCCCCcHHHHHHHHhhcCcCceeeeee
Confidence              11  134455788999999999999999999999998876544

>PRK13011 formyltetrahydrofolate deformylase; Reviewed

Probab=97.77  E-value=0.00051  Score=64.83  Aligned_cols=72  Identities=7%  Similarity=0.096  Sum_probs=47.8

Q ss_pred             eEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEe-cCCCCCCChHHHHHHHHHHHHHHcCCcce
Q 019269          176 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMELLQPLRV  254 (343)
Q Consensus       176 ~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~-~~g~~i~~~~~~~~l~~~L~~~L~~~~~~  254 (343)
                      .++|+|.|+||||++++||++|+++|+||.+.+..+...++.+.-.+.+. +.+.      ..+.|+++|.+ +..++.+
T Consensus         7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~~~------~~~~L~~~L~~-l~~~l~l   79 (286)
T PRK13011          7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEEGL------DEDALRAGFAP-IAARFGM   79 (286)
T ss_pred             eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCCCC------CHHHHHHHHHH-HHHHhCc
Confidence            46899999999999999999999999999988765322223333233333 2221      24567777644 4444443

>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.76  E-value=0.00088  Score=63.27  Aligned_cols=75  Identities=11%  Similarity=0.105  Sum_probs=50.0

Q ss_pred             CeEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCCcce
Q 019269          175 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLRV  254 (343)
Q Consensus       175 ~~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~~L~~~~~~  254 (343)
                      ..++|+|.|+||||+++.|+++|+++|+||.+.+..+...++.+.-.+.+..+..+    ...+.|+++|. .+..++.+
T Consensus         5 ~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~~~~~----~~~~~L~~~L~-~l~~~l~l   79 (286)
T PRK06027          5 QRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEGDGLI----FNLETLRADFA-ALAEEFEM   79 (286)
T ss_pred             ceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEeCCCC----CCHHHHHHHHH-HHHHHhCC
Confidence            46799999999999999999999999999999987631144432222222211111    13567877764 45554443

>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=97.75  E-value=0.00014  Score=51.69  Aligned_cols=67  Identities=22%  Similarity=0.375  Sum_probs=55.2

Q ss_pred             EEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHH
Q 019269          177 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWME  247 (343)
Q Consensus       177 t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~~  247 (343)
                      ++|+|.++|+.||=.++++++.+.|++|..+.+.  |+|....-+|.|.+....+  +-+++.|+++|+.+
T Consensus         1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~s--TDGkWCyiv~wVv~~~~~~--~~rW~lLK~RL~~~   67 (69)
T cd04894           1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDS--TDGRWCYIVFWVVPRPPSI--KVRWDLLKNRLMSA   67 (69)
T ss_pred             CEEEEeCCCccCcccHHHHHHHHhceEEEecccc--cCCcEEEEEEEEecCCCCC--cccHHHHHHHHHhc
Confidence            4799999999999999999999999999999998  7888888888886433333  23788898888653

This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR00655 PurU formyltetrahydrofolate deformylase

Probab=97.75  E-value=0.00087  Score=63.08  Aligned_cols=107  Identities=12%  Similarity=0.142  Sum_probs=62.9

Q ss_pred             EEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCCccee--
Q 019269          178 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLRVT--  255 (343)
Q Consensus       178 ~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~~L~~~~~~~--  255 (343)
                      +|+|.|+||||+++.|+++|+++|+||.+.+-+....++.+.-.+.+...+..+    ..+.|+++|.+++..+..++  
T Consensus         2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~~~~~----~~~~l~~~l~~~~~~~~~l~i~   77 (280)
T TIGR00655         2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLEGFRL----EESSLLAAFKSALAEKFEMTWE   77 (280)
T ss_pred             EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeCCCCC----CHHHHHHHHHHHHHHHhCCEEE
Confidence            689999999999999999999999999998876422335555444454222122    24567777655355444332  


Q ss_pred             eecCCCCceeeeeeeEEEEeCCCccHHHHHHHHHHhCCc
Q 019269          256 VVSRGPDTELLVANPVELSGKGRPLVFHDITLALKMLDI  294 (343)
Q Consensus       256 ~~~~~~~~~v~~~~~ieV~~~DrpGLL~~I~~~l~~~gi  294 (343)
                      +.....+.      .+-|.+.-+..=|.+|......-.+
T Consensus        78 l~~~~~~~------ki~vl~Sg~g~nl~~l~~~~~~g~l  110 (280)
T TIGR00655        78 LILADKLK------RVAILVSKEDHCLGDLLWRWYSGEL  110 (280)
T ss_pred             EecCCCCc------EEEEEEcCCChhHHHHHHHHHcCCC
Confidence            21111111      2333344444455555555554444

This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.

>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A

Probab=97.74  E-value=0.00032  Score=52.99  Aligned_cols=64  Identities=16%  Similarity=0.214  Sum_probs=46.2

Q ss_pred             eEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHH
Q 019269          176 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRL  244 (343)
Q Consensus       176 ~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L  244 (343)
                      .+.|.|.+.||||+|++|+.++++.|+||.+..+.+...++.+.-.|.+..     .+.+.++.+.+.|
T Consensus         6 ~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V-----~d~~~L~~ii~~L   69 (80)
T PF13291_consen    6 PVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEV-----KDLEHLNQIIRKL   69 (80)
T ss_dssp             EEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEE-----SSHHHHHHHHHHH
T ss_pred             EEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEE-----CCHHHHHHHHHHH
Confidence            468999999999999999999999999999999875213567776666652     2344666665554

>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A

Probab=97.71  E-value=0.00035  Score=52.75  Aligned_cols=49  Identities=31%  Similarity=0.417  Sum_probs=40.4

Q ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecC-CCEEEEEEEEec
Q 019269           42 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTP-DGKVMDLFFVTD   90 (343)
Q Consensus        42 ~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~-~g~~~d~f~V~~   90 (343)
                      +.|.|.+.||||+|++|+.+++..|+||.+.++.+.. +|.+.-.|.+.-
T Consensus         7 ~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V   56 (80)
T PF13291_consen    7 VRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEV   56 (80)
T ss_dssp             EEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEE
T ss_pred             EEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEE
Confidence            4789999999999999999999999999999999974 778777777764

>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.68  E-value=0.0015  Score=61.73  Aligned_cols=68  Identities=19%  Similarity=0.208  Sum_probs=50.9

Q ss_pred             CCEEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEe--cCCCEEEEEEEEecCCCcccchhHHHHHHHHHHHH
Q 019269           39 SDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKIST--TPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTI  111 (343)
Q Consensus        39 ~~~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T--~~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~~  111 (343)
                      ...+.|+|.|+||||+.+.++++|+++|+||.+.+.++  . +|.+.-.+.+...    ..+..++.|++.|+..
T Consensus         4 ~~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~-~g~F~m~i~v~~~----~~~~~~~~L~~~L~~l   73 (286)
T PRK06027          4 MQRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPE-TGRFFMRVEFEGD----GLIFNLETLRADFAAL   73 (286)
T ss_pred             CceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCC-CCeEEEEEEEEeC----CCCCCHHHHHHHHHHH
Confidence            45789999999999999999999999999999999988  5 4544444444321    1122367888888763

>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.64  E-value=0.0012  Score=62.32  Aligned_cols=36  Identities=8%  Similarity=0.110  Sum_probs=33.2

Q ss_pred             CeEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEE
Q 019269          175 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFS  210 (343)
Q Consensus       175 ~~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~  210 (343)
                      ..++|+|.|+|||||++.|+++|+++|+||.+.+-+
T Consensus         8 ~~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~   43 (289)
T PRK13010          8 PSYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQF   43 (289)
T ss_pred             cCEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccc
Confidence            356899999999999999999999999999988865

>COG3830 ACT domain-containing protein [Signal transduction mechanisms]

Probab=97.64  E-value=7.1e-05  Score=57.50  Aligned_cols=33  Identities=12%  Similarity=0.328  Sum_probs=30.4

Q ss_pred             eEEEEEEECCcccHHHHHHHHHHhCCeeEEEEE
Q 019269          176 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGR  208 (343)
Q Consensus       176 ~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~  208 (343)
                      ..+|+|.|+||||+.+.++++|+++|+||++-.
T Consensus         3 ~avITV~GkDr~GIva~is~vLAe~~vNIldis   35 (90)
T COG3830           3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDIS   35 (90)
T ss_pred             eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHH
Confidence            468999999999999999999999999999654

>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains

Probab=97.61  E-value=0.00076  Score=49.84  Aligned_cols=62  Identities=18%  Similarity=0.213  Sum_probs=47.6

Q ss_pred             EEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEecCCCcccchhHHHHHHHHHHH
Q 019269           44 LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT  110 (343)
Q Consensus        44 I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~  110 (343)
                      |.|.+.|+||+|++|+.+++..|.||.+.+..+..+|.+...|.+.-.     +.+.++.+.+.|++
T Consensus         2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev~-----~~~~l~~i~~~L~~   63 (74)
T cd04887           2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAP-----SEEHAETIVAAVRA   63 (74)
T ss_pred             EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEcC-----CHHHHHHHHHHHhc
Confidence            688999999999999999999999999888877556777666766542     34455555555544

The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.53  E-value=0.0023  Score=60.53  Aligned_cols=66  Identities=12%  Similarity=0.131  Sum_probs=45.7

Q ss_pred             EEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEE--ecCCCEEEEEEEEecCCCcccchhHHHHHHHHHHH
Q 019269           41 VFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKIS--TTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT  110 (343)
Q Consensus        41 ~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~--T~~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~  110 (343)
                      ..+|+|.|+||||+.+++++.|+++|+||++.+.+  +..+.++ ..+.+......   ....+.|++.|..
T Consensus         9 ~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ff-m~i~~~~~~~~---~~~~~~l~~~l~~   76 (289)
T PRK13010          9 SYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFF-MRVSFHAQSAE---AASVDTFRQEFQP   76 (289)
T ss_pred             CEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEE-EEEEEEcCCCC---CCCHHHHHHHHHH
Confidence            46899999999999999999999999999999987  4333444 22223321101   1124567766666

>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains

Probab=97.53  E-value=0.0012  Score=48.81  Aligned_cols=60  Identities=7%  Similarity=0.128  Sum_probs=44.2

Q ss_pred             EEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHH
Q 019269          179 VQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRL  244 (343)
Q Consensus       179 i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L  244 (343)
                      |.|.+.||||+|++|+.++++.|.||.+....+ ...+.+...|.+..     .+.+.++.+.+.|
T Consensus         2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~-~~~~~~~~~~~vev-----~~~~~l~~i~~~L   61 (74)
T cd04887           2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVE-QGRDYTVRDITVDA-----PSEEHAETIVAAV   61 (74)
T ss_pred             EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEE-ecCCEEEEEEEEEc-----CCHHHHHHHHHHH
Confidence            678999999999999999999999999877753 33456655566542     2344566666665

The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR00655 PurU formyltetrahydrofolate deformylase

Probab=97.52  E-value=0.0041  Score=58.58  Aligned_cols=64  Identities=19%  Similarity=0.242  Sum_probs=48.4

Q ss_pred             EEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecC-CCEEEEEEEEecCCCcccchhHHHHHHHHHHH
Q 019269           43 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTP-DGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT  110 (343)
Q Consensus        43 ~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~-~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~  110 (343)
                      +|+|.|+||||+.+.+++.|+++|+||.+.+.+... +|++.-.+.+..+...    ...+.+++.|..
T Consensus         2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~~~~----~~~~~l~~~l~~   66 (280)
T TIGR00655         2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLEGFR----LEESSLLAAFKS   66 (280)
T ss_pred             EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeCCCC----CCHHHHHHHHHH
Confidence            689999999999999999999999999999998853 4666555556543211    124567766666

This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.

>PRK13011 formyltetrahydrofolate deformylase; Reviewed

Probab=97.45  E-value=0.0057  Score=57.76  Aligned_cols=66  Identities=20%  Similarity=0.252  Sum_probs=49.1

Q ss_pred             EEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEec-CCCEEEEEEEEecCCCcccchhHHHHHHHHHHHH
Q 019269           41 VFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTT-PDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTI  111 (343)
Q Consensus        41 ~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~-~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~~  111 (343)
                      .+.|+|.|+||||+.+++|++|+++|+||.+.+.++. .++.+.-.+.+..+.+     ...+.|++.|...
T Consensus         7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~~-----~~~~~L~~~L~~l   73 (286)
T PRK13011          7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEEG-----LDEDALRAGFAPI   73 (286)
T ss_pred             eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCCC-----CCHHHHHHHHHHH
Confidence            5789999999999999999999999999998888743 3455544555543322     1256777777773

>COG3830 ACT domain-containing protein [Signal transduction mechanisms]

Probab=97.35  E-value=0.00032  Score=53.90  Aligned_cols=67  Identities=19%  Similarity=0.191  Sum_probs=48.5

Q ss_pred             EEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEecCCCcccchhHHHHHHHHHHHHh
Q 019269           41 VFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTIL  112 (343)
Q Consensus        41 ~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~~l  112 (343)
                      ..+|+|.|+||||+.+.++++|+++|.||++-...- -+|++--.+.|..+..    ......+++.|....
T Consensus         3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtv-m~~~ftm~~lV~~~~~----~~d~~~lr~~l~~~~   69 (90)
T COG3830           3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTV-MDGFFTMIMLVDISKE----VVDFAALRDELAAEG   69 (90)
T ss_pred             eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHH-HhhhceeeeEEcCChH----hccHHHHHHHHHHHH
Confidence            468999999999999999999999999999544433 3777766666654321    223456666666644

>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]

Probab=97.32  E-value=0.0012  Score=60.71  Aligned_cols=37  Identities=14%  Similarity=0.243  Sum_probs=34.3

Q ss_pred             CeEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEE
Q 019269          175 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSR  211 (343)
Q Consensus       175 ~~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t  211 (343)
                      ..+++++.|+|++||+++|++.|+++|+||.++.-++
T Consensus         6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~   42 (287)
T COG0788           6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFD   42 (287)
T ss_pred             cceEEEEecCCCCCcHHHHHHHHHHcCCceeeccccc
Confidence            4579999999999999999999999999999998774

>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate

Probab=97.15  E-value=0.0019  Score=45.10  Aligned_cols=47  Identities=23%  Similarity=0.320  Sum_probs=40.4

Q ss_pred             EEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEec
Q 019269           44 LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTD   90 (343)
Q Consensus        44 I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~   90 (343)
                      |.|..+|+||.+++++..|..+|+||.+..++...++..+-.|.+.+
T Consensus         1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~   47 (56)
T cd04889           1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSD   47 (56)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECC
Confidence            46788999999999999999999999999988865577777777754

Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A

>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]

Probab=97.15  E-value=0.0026  Score=58.46  Aligned_cols=67  Identities=19%  Similarity=0.303  Sum_probs=48.3

Q ss_pred             CEEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecC-CCEEEEEEEEecCCCcccchhHHHHHHHHHHH
Q 019269           40 DVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTP-DGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT  110 (343)
Q Consensus        40 ~~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~-~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~  110 (343)
                      ...++++.|+|++|+.++|++.|+.+||||.++.-++.. .|+++.-......++    +...+.++..+..
T Consensus         6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~~~~----~~~~~~l~~~f~~   73 (287)
T COG0788           6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEGEGG----PLDREALRAAFAP   73 (287)
T ss_pred             cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEecCCC----cccHHHHHHHHHH
Confidence            568999999999999999999999999999999999643 455533222222222    1234566666666

>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains

Probab=97.14  E-value=0.0048  Score=44.60  Aligned_cols=62  Identities=23%  Similarity=0.223  Sum_probs=42.5

Q ss_pred             EEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecC----CCEEEEEEEEecCCCcccchhHHHHHHHHHHH
Q 019269           44 LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTP----DGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT  110 (343)
Q Consensus        44 I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~----~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~  110 (343)
                      +.|.++|+||.|++++.+|+.+|+||.+.......    ++...-.|.+...     +.+.++.+.+.|++
T Consensus         1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~-----~~~~l~~l~~~l~~   66 (73)
T cd04886           1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETR-----GAEHIEEIIAALRE   66 (73)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeC-----CHHHHHHHHHHHHH
Confidence            35788999999999999999999999977765432    3555555555431     23444555555544

This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK06737 acetolactate synthase 1 regulatory subunit; Validated

Probab=97.14  E-value=0.0034  Score=47.19  Aligned_cols=64  Identities=13%  Similarity=0.081  Sum_probs=42.9

Q ss_pred             EEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHHHH
Q 019269          177 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWM  246 (343)
Q Consensus       177 t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~  246 (343)
                      ..+.+...|+||+|++|+++|+..|+||.+..+.- +......- +.+...|    +++..++|.+.|.+
T Consensus         3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~-te~~~~sr-iti~~~~----~~~~i~qi~kQL~K   66 (76)
T PRK06737          3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNE-RDTSGVSE-MKLTAVC----TENEATLLVSQLKK   66 (76)
T ss_pred             EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecc-cCCCCeeE-EEEEEEC----CHHHHHHHHHHHhC
Confidence            46899999999999999999999999999777652 22222222 2222111    24456677666643

>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional

Probab=97.12  E-value=0.0029  Score=48.32  Aligned_cols=63  Identities=10%  Similarity=0.052  Sum_probs=43.6

Q ss_pred             EEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecC-CEEEEEEEEecCCCCCCChHHHHHHHHHHHH
Q 019269          178 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRG-NCEIDLFIMQADGKKIVDPSKQNGLSSRLWM  246 (343)
Q Consensus       178 ~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g-~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~  246 (343)
                      .+.+...|+||+|++|++.|++.|+||.+-.+.. |.. +..--++.+. .    .+++..+++.+.|.+
T Consensus         4 ~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~-Te~~~iSRmtivv~-~----~d~~~ieqI~kQL~K   67 (84)
T PRK13562          4 ILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTH-SEQPGISNMEIQVD-I----QDDTSLHILIKKLKQ   67 (84)
T ss_pred             EEEEEEECCCCHHHHHHHHHhccCcCeeeEEecc-cCCCCceEEEEEEe-C----CCHHHHHHHHHHHhC
Confidence            6899999999999999999999999999887753 332 2222222222 1    234566777776644

>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed

Probab=97.04  E-value=0.0042  Score=48.63  Aligned_cols=36  Identities=8%  Similarity=0.187  Sum_probs=32.5

Q ss_pred             CeEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEE
Q 019269          175 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFS  210 (343)
Q Consensus       175 ~~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~  210 (343)
                      ....|++...|+||+|++|++.|+..|+||.+-.+.
T Consensus         7 ~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg   42 (96)
T PRK08178          7 DNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCL   42 (96)
T ss_pred             CCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEe
Confidence            446799999999999999999999999999987765

>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed

Probab=97.03  E-value=0.0059  Score=47.81  Aligned_cols=68  Identities=16%  Similarity=0.302  Sum_probs=48.4

Q ss_pred             CCCCEEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCC-CEEEEEEEEecCCCcccchhHHHHHHHHHHHH
Q 019269           37 KPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPD-GKVMDLFFVTDTRELLHTRKRKEDTYEHLKTI  111 (343)
Q Consensus        37 ~~~~~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~-g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~~  111 (343)
                      .+.+...|.++..|+||.|+++++.|+..|+||.+-.+.-+.+ +..=-++.+.       ++..++++.+.|.+.
T Consensus         4 ~~~~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~-------~~~~i~Qi~kQL~KL   72 (96)
T PRK08178          4 TTHDNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN-------DDQRLEQMISQIEKL   72 (96)
T ss_pred             CCCCCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc-------CchHHHHHHHHHhCC
Confidence            3455567999999999999999999999999999877755443 3322233332       134567777777763

>CHL00100 ilvH acetohydroxyacid synthase small subunit

Probab=97.02  E-value=0.0053  Score=53.62  Aligned_cols=66  Identities=11%  Similarity=0.181  Sum_probs=45.3

Q ss_pred             EEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHH
Q 019269          177 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMEL  248 (343)
Q Consensus       177 t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~~L  248 (343)
                      ..+.|.+.|+||+|++|+++|+++|+||.+-........+...-++.+. .     ++...++|.+.|.+..
T Consensus         3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~-~-----~~~~ieqL~kQL~KLi   68 (174)
T CHL00100          3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVP-G-----DDRTIEQLTKQLYKLV   68 (174)
T ss_pred             EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEE-C-----CHHHHHHHHHHHHHHh
Confidence            4789999999999999999999999999987775311333332223332 1     1223677888876543

>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains

Probab=97.00  E-value=0.0072  Score=43.63  Aligned_cols=32  Identities=9%  Similarity=0.195  Sum_probs=28.3

Q ss_pred             EEEEECCcccHHHHHHHHHHhCCeeEEEEEEE
Q 019269          179 VQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFS  210 (343)
Q Consensus       179 i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~  210 (343)
                      +.|..+|+||+|++|+.+|++.|+||.+....
T Consensus         1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~   32 (73)
T cd04886           1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHD   32 (73)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEE
Confidence            35788999999999999999999999977654

This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH)

Probab=96.98  E-value=0.0079  Score=43.72  Aligned_cols=48  Identities=19%  Similarity=0.310  Sum_probs=36.8

Q ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCC-EEEEEEEEe
Q 019269           42 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDG-KVMDLFFVT   89 (343)
Q Consensus        42 ~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g-~~~d~f~V~   89 (343)
                      ..+.|..+|+||.+++++..|+.+|+||.+.......++ ...-.+.+.
T Consensus         2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~   50 (69)
T cd04909           2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFK   50 (69)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEEC
Confidence            468889999999999999999999999998877664322 222345444

The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK06737 acetolactate synthase 1 regulatory subunit; Validated

Probab=96.95  E-value=0.0071  Score=45.47  Aligned_cols=63  Identities=11%  Similarity=0.123  Sum_probs=45.7

Q ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCC-CEEEEEEEEecCCCcccchhHHHHHHHHHHH
Q 019269           42 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPD-GKVMDLFFVTDTRELLHTRKRKEDTYEHLKT  110 (343)
Q Consensus        42 ~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~-g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~  110 (343)
                      ..+.+...|+||.|++++++|+..|+||.+-.+.-+.+ |..--++.+..      ++..++++.+.|.+
T Consensus         3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~------~~~~i~qi~kQL~K   66 (76)
T PRK06737          3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVC------TENEATLLVSQLKK   66 (76)
T ss_pred             EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEEC------CHHHHHHHHHHHhC
Confidence            46899999999999999999999999999877764433 33322333332      34556777777766

>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS)

Probab=96.94  E-value=0.0075  Score=43.41  Aligned_cols=42  Identities=14%  Similarity=0.086  Sum_probs=34.9

Q ss_pred             eEEEEeCCCccHHHHHHHHHHhCCceEEEEEeecccc-CceEeee
Q 019269          270 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMI-GDREWEV  313 (343)
Q Consensus       270 ~ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~~~T~-g~~~~dv  313 (343)
                      .+.+.+.|+||+|.+|+.+|+++|++|.+....  +. ++....+
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~--~~~~~~~~~~   44 (72)
T cd04878           2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVG--PTEDPGISRI   44 (72)
T ss_pred             EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEee--ecCCCCeEEE
Confidence            467899999999999999999999999999987  54 4444444

ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of

>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains

Probab=96.92  E-value=0.0059  Score=44.25  Aligned_cols=37  Identities=16%  Similarity=0.118  Sum_probs=33.4

Q ss_pred             eEEEEeCCCccHHHHHHHHHHhCCceEEEEEeeccccCc
Q 019269          270 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGD  308 (343)
Q Consensus       270 ~ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~~~T~g~  308 (343)
                      .+.|..+|+||.|++|+..|+++|+||.+.-+.  ..++
T Consensus         3 ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~--~~~~   39 (66)
T cd04908           3 QLSVFLENKPGRLAAVTEILSEAGINIRALSIA--DTSE   39 (66)
T ss_pred             EEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEE--ecCC
Confidence            578899999999999999999999999999887  5555

Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.

>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate

Probab=96.92  E-value=0.0036  Score=43.66  Aligned_cols=46  Identities=17%  Similarity=0.324  Sum_probs=36.8

Q ss_pred             EEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEe
Q 019269          179 VQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ  225 (343)
Q Consensus       179 i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~  225 (343)
                      +.+..+|+||.+++++..|.++|+||.+..+.. +.++.+.-.|.+.
T Consensus         1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~-~~~~~~~~~~~v~   46 (56)
T cd04889           1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAE-TRGEFGILRLIFS   46 (56)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEE-ccCCcEEEEEEEC
Confidence            357889999999999999999999999998874 3345666555553

Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A

>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=96.91  E-value=0.0051  Score=44.12  Aligned_cols=32  Identities=22%  Similarity=0.232  Sum_probs=30.5

Q ss_pred             EEEEeCCCccHHHHHHHHHHhCCceEEEEEee
Q 019269          271 VELSGKGRPLVFHDITLALKMLDICIFSAEIG  302 (343)
Q Consensus       271 ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~  302 (343)
                      +.|.+.|+||+|.+|+.+|+++|++|.+..+.
T Consensus         2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~   33 (71)
T cd04879           2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVG   33 (71)
T ss_pred             EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEe
Confidence            57889999999999999999999999999998

ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active

>TIGR00119 acolac_sm acetolactate synthase, small subunit

Probab=96.89  E-value=0.0083  Score=51.55  Aligned_cols=64  Identities=17%  Similarity=0.244  Sum_probs=51.0

Q ss_pred             EEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecC-CCEEEEEEEEecCCCcccchhHHHHHHHHHHHHh
Q 019269           43 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTP-DGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTIL  112 (343)
Q Consensus        43 ~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~-~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~~l  112 (343)
                      .++|...|+||.|+++++.|+..|+||.+-.+.... +|..--+|.|..      ++..++++.+.|.+..
T Consensus         3 ~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~------d~~~i~qi~kQl~Kli   67 (157)
T TIGR00119         3 ILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVG------DDKVLEQITKQLNKLV   67 (157)
T ss_pred             EEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEEC------CHHHHHHHHHHHhcCc
Confidence            588999999999999999999999999988887765 566666666653      2456777877777743

acetohydroxyacid synthase is a synonym.

>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein

Probab=96.86  E-value=0.0092  Score=44.30  Aligned_cols=35  Identities=26%  Similarity=0.540  Sum_probs=32.3

Q ss_pred             EEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEec
Q 019269           43 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTT   77 (343)
Q Consensus        43 ~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~   77 (343)
                      .|.|.+.||+|++++|+.+++..|.||.+.++.+.
T Consensus         2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~   36 (74)
T cd04877           2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK   36 (74)
T ss_pred             EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC
Confidence            47899999999999999999999999999998763

ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence

>TIGR00119 acolac_sm acetolactate synthase, small subunit

Probab=96.84  E-value=0.0097  Score=51.14  Aligned_cols=64  Identities=6%  Similarity=0.119  Sum_probs=46.2

Q ss_pred             EEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeec-CCEEEEEEEEecCCCCCCChHHHHHHHHHHHHH
Q 019269          177 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQR-GNCEIDLFIMQADGKKIVDPSKQNGLSSRLWME  247 (343)
Q Consensus       177 t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~-g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~~  247 (343)
                      ..++|...|+||.|++|+++|+++|+||.+..+.. +. .+...-+|.+..      ++...+++.+.|.+.
T Consensus         2 ~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~-t~~~~~sriti~V~~------d~~~i~qi~kQl~Kl   66 (157)
T TIGR00119         2 HILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGP-TEDPDLSRMTIVVVG------DDKVLEQITKQLNKL   66 (157)
T ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEee-cCCCCEEEEEEEEEC------CHHHHHHHHHHHhcC
Confidence            36889999999999999999999999999877763 32 234443444442      244667777776544

acetohydroxyacid synthase is a synonym.

>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed

Probab=96.82  E-value=0.011  Score=50.93  Aligned_cols=65  Identities=6%  Similarity=0.090  Sum_probs=46.7

Q ss_pred             EEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeec-CCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHH
Q 019269          177 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQR-GNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMEL  248 (343)
Q Consensus       177 t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~-g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~~L  248 (343)
                      ..++|...|+||.|++|++.|+++|+||.+-.+.. +. .+...-+|.+..      ++...+++.+.|.+.+
T Consensus         3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~-te~~~~sriti~V~~------~~~~i~qi~kQl~KLi   68 (161)
T PRK11895          3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGP-TEDPGLSRMTIVTSG------DEQVIEQITKQLNKLI   68 (161)
T ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeee-cCCCCEEEEEEEEEC------CHHHHHHHHHHHhccc
Confidence            47899999999999999999999999999877653 32 334443444442      2446677777765543

>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains

Probab=96.82  E-value=0.0096  Score=43.68  Aligned_cols=33  Identities=30%  Similarity=0.179  Sum_probs=30.9

Q ss_pred             eEEEEeCCCccHHHHHHHHHHhCCceEEEEEee
Q 019269          270 PVELSGKGRPLVFHDITLALKMLDICIFSAEIG  302 (343)
Q Consensus       270 ~ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~  302 (343)
                      .+.|.+.|+||+|.+|+.+|+++|++|......
T Consensus         2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~   34 (79)
T cd04881           2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQK   34 (79)
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEc
Confidence            478899999999999999999999999999876

The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a

Probab=96.81  E-value=0.013  Score=43.25  Aligned_cols=48  Identities=15%  Similarity=0.182  Sum_probs=38.2

Q ss_pred             EEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEec
Q 019269           43 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTD   90 (343)
Q Consensus        43 ~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~   90 (343)
                      .+.|.+.|+||++++|+.+|+.+|.||......+..+|.+--.|.+..
T Consensus         2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v   49 (76)
T cd04888           2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDT   49 (76)
T ss_pred             EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEc
Confidence            578999999999999999999999999977665434565555566654

a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed

Probab=96.81  E-value=0.011  Score=51.03  Aligned_cols=65  Identities=15%  Similarity=0.236  Sum_probs=50.8

Q ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecC-CCEEEEEEEEecCCCcccchhHHHHHHHHHHHHh
Q 019269           42 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTP-DGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTIL  112 (343)
Q Consensus        42 ~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~-~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~~l  112 (343)
                      ..++|...|+||.|+++++.|+.+|+||.+-.+.... +|..--+|.|..      ++..++++.+.|.+..
T Consensus         3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~------~~~~i~qi~kQl~KLi   68 (161)
T PRK11895          3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSG------DEQVIEQITKQLNKLI   68 (161)
T ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEEC------CHHHHHHHHHHHhccc
Confidence            4688999999999999999999999999988877654 566656666653      3556778877777743

>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a

Probab=96.81  E-value=0.011  Score=43.57  Aligned_cols=61  Identities=10%  Similarity=0.064  Sum_probs=42.5

Q ss_pred             EEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChH-HHHHHHHHH
Q 019269          178 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPS-KQNGLSSRL  244 (343)
Q Consensus       178 ~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~-~~~~l~~~L  244 (343)
                      .+.|.+.|+||++++|+++++++|+||......+ ..++.+.-.|.+...     +.+ .++++.++|
T Consensus         2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~-~~~~~~~i~~~v~v~-----~~~~~l~~l~~~L   63 (76)
T cd04888           2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNI-PIHGRANVTISIDTS-----TMNGDIDELLEEL   63 (76)
T ss_pred             EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCC-CCCCeEEEEEEEEcC-----chHHHHHHHHHHH
Confidence            5789999999999999999999999999765432 233455544555421     222 556666665

a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme

Probab=96.81  E-value=0.0082  Score=45.26  Aligned_cols=49  Identities=12%  Similarity=0.032  Sum_probs=37.0

Q ss_pred             eEEEEeCCCccHHHHHHHHHHhCCceEEEEEeeccccCceEeeeeEEEEEcC
Q 019269          270 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEG  321 (343)
Q Consensus       270 ~ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~~~T~g~~~~dv~~F~v~~~  321 (343)
                      .+.+..+|+||.|++|...|+++|+||.+....  ..+..- ..|.|||...
T Consensus         3 sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~--p~~~~~-~~~~f~vd~~   51 (80)
T cd04905           3 SIVFTLPNKPGALYDVLGVFAERGINLTKIESR--PSKGGL-WEYVFFIDFE   51 (80)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEE--EcCCCC-ceEEEEEEEE
Confidence            467778999999999999999999999999766  333222 2245888533

The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi

>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein

Probab=96.74  E-value=0.013  Score=43.52  Aligned_cols=33  Identities=21%  Similarity=0.421  Sum_probs=30.7

Q ss_pred             EEEEEECCcccHHHHHHHHHHhCCeeEEEEEEE
Q 019269          178 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFS  210 (343)
Q Consensus       178 ~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~  210 (343)
                      .|.|.+.||+|++++|+.++++.|+||.+..+.
T Consensus         2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~   34 (74)
T cd04877           2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEID   34 (74)
T ss_pred             EEEEEEEccchHHHHHHHHHHHCCCceEEEEEe
Confidence            478999999999999999999999999988876

ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence

>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains

Probab=96.72  E-value=0.014  Score=42.79  Aligned_cols=46  Identities=24%  Similarity=0.368  Sum_probs=35.7

Q ss_pred             EEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCC-CEEEEEEEE
Q 019269           43 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPD-GKVMDLFFV   88 (343)
Q Consensus        43 ~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~-g~~~d~f~V   88 (343)
                      -|.|.+.|++|++++++.+|+.+|+||.+....+..+ +.+.-.+.+
T Consensus         2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~   48 (79)
T cd04881           2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVT   48 (79)
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEE
Confidence            4778899999999999999999999999887655433 544333444

The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional

Probab=96.72  E-value=0.012  Score=44.33  Aligned_cols=63  Identities=14%  Similarity=0.090  Sum_probs=44.2

Q ss_pred             EEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHHHH
Q 019269          177 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWM  246 (343)
Q Consensus       177 t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~  246 (343)
                      ..+++...|+||.|++++++|...|+||.+..+.....++...-++.+. +      +...++|.+.|.+
T Consensus         4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~-~------~~~i~ql~kQL~K   66 (76)
T PRK11152          4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVA-S------ERPIDLLSSQLNK   66 (76)
T ss_pred             EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEEC-C------CchHHHHHHHHhc
Confidence            5789999999999999999999999999988876412333333333332 1      2345677766644

>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains

Probab=96.72  E-value=0.017  Score=41.83  Aligned_cols=38  Identities=26%  Similarity=0.342  Sum_probs=33.8

Q ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCC
Q 019269           42 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPD   79 (343)
Q Consensus        42 ~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~   79 (343)
                      ..+.|..+|+||.|++++..|..+|+||.+..++...+
T Consensus         2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~   39 (66)
T cd04908           2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSE   39 (66)
T ss_pred             EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCC
Confidence            46889999999999999999999999999998877533

Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.

>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a

Probab=96.69  E-value=0.017  Score=41.66  Aligned_cols=47  Identities=23%  Similarity=0.256  Sum_probs=37.1

Q ss_pred             EEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEe
Q 019269           43 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVT   89 (343)
Q Consensus        43 ~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~   89 (343)
                      .+.+.++|++|.+++++..|+++++||.+....+..++...-.|.+.
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~   48 (72)
T cd04874           2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKARIYMELE   48 (72)
T ss_pred             eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCeEEEEEEEe
Confidence            57889999999999999999999999998887664345544344444

a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK07431 aspartate kinase; Provisional

Probab=96.69  E-value=0.26  Score=51.32  Aligned_cols=201  Identities=18%  Similarity=0.148  Sum_probs=110.7

Q ss_pred             CCCEEEEEEEEc---CCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEecCCCcccchhHHHHHHHHHHHHhcc
Q 019269           38 PSDVFLLKLSCY---DRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGN  114 (343)
Q Consensus        38 ~~~~~~I~V~~~---Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~~l~~  114 (343)
                      ..+...|.|++.   +.+|+++++..+|...|+||..-.  +.  +.. -.|.|.        ++..++.-+.|.+.+..
T Consensus       345 ~~~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~--sS--e~~-Is~vv~--------~~d~~~av~~Lh~~f~~  411 (587)
T PRK07431        345 ETNVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMIS--TS--EVK-VSCVID--------AEDGDKALRAVCEAFEL  411 (587)
T ss_pred             eCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE--cC--CCE-EEEEEc--------HHHHHHHHHHHHHHhcc
Confidence            467778999984   789999999999999999997333  42  222 123333        33345555666666633


Q ss_pred             cccccccccccceeecccCCCCCCchHHHhhhcccCCCCCCCCCCCCCccEEEEEeCCCCCeEEEEEE-ECCcccHHHHH
Q 019269          115 AMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIV-CQDHKGLLYDI  193 (343)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~i~V~-~~DrpGLl~~i  193 (343)
                      ....       .++         .|-+. .               ......-.+.  ...+...|++. .++.+|+++++
T Consensus       412 ~~~~-------~~~---------~~~~~-~---------------~~~~~v~gIa--~~~~~~~i~l~~~~~~~g~~a~i  457 (587)
T PRK07431        412 EDSQ-------IEI---------NPTAS-G---------------QDEPEVRGVA--LDRNQAQLAIRNVPDRPGMAASI  457 (587)
T ss_pred             CCcc-------ccc---------Ccccc-C---------------CCCCcEEEEE--ccCCEEEEEECCCCCCccHHHHH
Confidence            2110       001         01110 0               0011111121  12344555554 57889999999


Q ss_pred             HHHHHhCCeeEEEEEEEEeecCC--EEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCCcceeeecCCCCceeeeeeeE
Q 019269          194 MRTLKDYNIQVSYGRFSRRQRGN--CEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLRVTVVSRGPDTELLVANPV  271 (343)
Q Consensus       194 ~~~L~~~glnI~~A~i~t~t~g~--~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~~L~~~~~~~~~~~~~~~~v~~~~~i  271 (343)
                      .+.|+++|++|..-.... ..++  ..--.|.+...     +..++.++.+.|...+.. ..+.+ ...       -..|
T Consensus       458 f~~l~~~~i~id~i~~~~-~~~~~~~~~isf~v~~~-----~~~~~~~~l~~l~~~~~~-~~i~~-~~~-------va~V  522 (587)
T PRK07431        458 FGALAEANISVDMIVQSQ-RCRSDGTRDISFTVPKE-----DREAAQKVLRELAKQLPG-AEVED-GPA-------IAKV  522 (587)
T ss_pred             HHHHHHcCCeEEEEEecC-CCCCCCceeEEEEEcHH-----HHHHHHHHHHHHHHhcCC-ceEEE-eCC-------eEEE
Confidence            999999999998442210 1121  22222444321     111222222222222211 00100 011       1267


Q ss_pred             EEEeC---CCccHHHHHHHHHHhCCceEEEEE
Q 019269          272 ELSGK---GRPLVFHDITLALKMLDICIFSAE  300 (343)
Q Consensus       272 eV~~~---DrpGLL~~I~~~l~~~gi~I~~Ak  300 (343)
                      .|.|.   .+||++.++..+|++.||+|+...
T Consensus       523 SvVG~gm~~~~gv~~ri~~aL~~~~I~v~~i~  554 (587)
T PRK07431        523 SIVGAGMPGTPGVAARMFRALADAGINIEMIA  554 (587)
T ss_pred             EEECCCccCCcCHHHHHHHHHHHCCCcEEEee
Confidence            88886   899999999999999999997665

>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional

Probab=96.68  E-value=0.012  Score=44.91  Aligned_cols=64  Identities=19%  Similarity=0.226  Sum_probs=46.8

Q ss_pred             EEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCC-CEEEEEEEEecCCCcccchhHHHHHHHHHHHH
Q 019269           43 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPD-GKVMDLFFVTDTRELLHTRKRKEDTYEHLKTI  111 (343)
Q Consensus        43 ~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~-g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~~  111 (343)
                      .|.++..|+||.|+++++.|+..|+||.+-.+..+.+ |..=-++.+..  |   ++..++++.+.|.+.
T Consensus         4 ~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~--~---d~~~ieqI~kQL~Kl   68 (84)
T PRK13562          4 ILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDI--Q---DDTSLHILIKKLKQQ   68 (84)
T ss_pred             EEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeC--C---CHHHHHHHHHHHhCC
Confidence            6899999999999999999999999999888866543 43333344421  1   355567777777663

>PRK08577 hypothetical protein; Provisional

Probab=96.67  E-value=0.035  Score=46.45  Aligned_cols=54  Identities=17%  Similarity=0.253  Sum_probs=41.0

Q ss_pred             CCCCeEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEe
Q 019269          172 LSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ  225 (343)
Q Consensus       172 ~~~~~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~  225 (343)
                      .....+.|.|.+.|+||+|++|+++|+++|+||.+....+...++.+.-.|.+.
T Consensus        52 ~~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~ve  105 (136)
T PRK08577         52 PGKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVD  105 (136)
T ss_pred             CCccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEE
Confidence            344578999999999999999999999999999987765322244444445554

>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit

Probab=96.66  E-value=0.013  Score=42.11  Aligned_cols=32  Identities=19%  Similarity=0.187  Sum_probs=29.8

Q ss_pred             EEEEeCCCccHHHHHHHHHHhCCceEEEEEee
Q 019269          271 VELSGKGRPLVFHDITLALKMLDICIFSAEIG  302 (343)
Q Consensus       271 ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~  302 (343)
                      +.+.+.|+||.|.+|+..|+++|++|.+....
T Consensus         2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~   33 (71)
T cd04903           2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVS   33 (71)
T ss_pred             EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEE
Confidence            57889999999999999999999999999877

The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS)

Probab=96.62  E-value=0.024  Score=40.66  Aligned_cols=62  Identities=16%  Similarity=0.237  Sum_probs=44.2

Q ss_pred             EEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEec-CCCEEEEEEEEecCCCcccchhHHHHHHHHHHH
Q 019269           43 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTT-PDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT  110 (343)
Q Consensus        43 ~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~-~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~  110 (343)
                      .+.+.+.|++|++++++..|+.+|.||.+....+. .++.+.-.|.+...     + ...+.+.+.|..
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~l~~~l~~   64 (72)
T cd04878           2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEGD-----D-DVIEQIVKQLNK   64 (72)
T ss_pred             EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEECC-----H-HHHHHHHHHHhC
Confidence            36788999999999999999999999998887764 35655545555431     2 344555555543

ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of

>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH)

Probab=96.55  E-value=0.029  Score=40.67  Aligned_cols=35  Identities=14%  Similarity=0.200  Sum_probs=31.2

Q ss_pred             EEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEE
Q 019269          177 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSR  211 (343)
Q Consensus       177 t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t  211 (343)
                      +.+.+..+|+||.|+++++.|+++|+||.+.....
T Consensus         2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~   36 (69)
T cd04909           2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILE   36 (69)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEE
Confidence            46888999999999999999999999999776653

The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme

Probab=96.51  E-value=0.033  Score=41.92  Aligned_cols=51  Identities=16%  Similarity=0.266  Sum_probs=37.1

Q ss_pred             EEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecC-CEEEEEEEEecCCC
Q 019269          177 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRG-NCEIDLFIMQADGK  229 (343)
Q Consensus       177 t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g-~~~~d~F~v~~~g~  229 (343)
                      +.+.+..+|+||.|+++...|+++|+||.+-...  ... +...-.|+++.++.
T Consensus         2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~--p~~~~~~~~~f~vd~~~~   53 (80)
T cd04905           2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESR--PSKGGLWEYVFFIDFEGH   53 (80)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEE--EcCCCCceEEEEEEEECC
Confidence            4567788999999999999999999999966533  332 23334577774443

The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi

>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional

Probab=96.50  E-value=0.024  Score=42.66  Aligned_cols=62  Identities=13%  Similarity=0.107  Sum_probs=46.2

Q ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEE-EEEEEEecCCCcccchhHHHHHHHHHHH
Q 019269           42 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKV-MDLFFVTDTRELLHTRKRKEDTYEHLKT  110 (343)
Q Consensus        42 ~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~-~d~f~V~~~~g~~~~~~~~~~l~~~L~~  110 (343)
                      ..+.+...|+||.|++++++++..|+||.+-.+-.+.++-. --++.|.       ++..+++|.+.|.+
T Consensus         4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~-------~~~~i~ql~kQL~K   66 (76)
T PRK11152          4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVA-------SERPIDLLSSQLNK   66 (76)
T ss_pred             EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEEC-------CCchHHHHHHHHhc
Confidence            46899999999999999999999999999888876544433 2334442       13345677777766

>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains

Probab=96.44  E-value=0.012  Score=41.80  Aligned_cols=32  Identities=19%  Similarity=0.044  Sum_probs=29.6

Q ss_pred             EEEEeCCCccHHHHHHHHHHhCCceEEEEEee
Q 019269          271 VELSGKGRPLVFHDITLALKMLDICIFSAEIG  302 (343)
Q Consensus       271 ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~  302 (343)
                      +.|.-+||||-|++++.+|+++|+||.+....
T Consensus         2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~   33 (65)
T cd04882           2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAF   33 (65)
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCChhheEEE
Confidence            67888999999999999999999999988876

Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.

>CHL00100 ilvH acetohydroxyacid synthase small subunit

Probab=96.41  E-value=0.024  Score=49.57  Aligned_cols=65  Identities=15%  Similarity=0.256  Sum_probs=46.5

Q ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCC-CEEEEEEEEecCCCcccchhHHHHHHHHHHHHh
Q 019269           42 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPD-GKVMDLFFVTDTRELLHTRKRKEDTYEHLKTIL  112 (343)
Q Consensus        42 ~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~-g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~~l  112 (343)
                      ..+.|.+.|+||++++++++|+..|+||.+-....+.+ |..--++.+..      ++..+++|.+.|.+..
T Consensus         3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~~------~~~~ieqL~kQL~KLi   68 (174)
T CHL00100          3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPG------DDRTIEQLTKQLYKLV   68 (174)
T ss_pred             EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEEC------CHHHHHHHHHHHHHHh
Confidence            46899999999999999999999999999888765433 33322232221      1233678888888844

>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=96.41  E-value=0.015  Score=41.53  Aligned_cols=46  Identities=20%  Similarity=0.263  Sum_probs=38.7

Q ss_pred             EEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecC-CCEEEEEEEEe
Q 019269           44 LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTP-DGKVMDLFFVT   89 (343)
Q Consensus        44 I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~-~g~~~d~f~V~   89 (343)
                      +.|.+.|++|++++++.+|+.+|+||.+....... +|...-.|.+.
T Consensus         2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v~   48 (71)
T cd04879           2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVD   48 (71)
T ss_pred             EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEcC
Confidence            67889999999999999999999999998887753 46776667663

ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active

>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=96.39  E-value=0.019  Score=41.84  Aligned_cols=47  Identities=23%  Similarity=0.437  Sum_probs=38.1

Q ss_pred             EEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEec-CCCEEEEEEEEec
Q 019269           44 LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTT-PDGKVMDLFFVTD   90 (343)
Q Consensus        44 I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~-~~g~~~d~f~V~~   90 (343)
                      +.+..+|+||.+++++..|+++|+||.+...... .++...-+|.+..
T Consensus         2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~   49 (73)
T cd04902           2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDE   49 (73)
T ss_pred             EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCC
Confidence            4678999999999999999999999997776554 3567766676654

The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden

>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit

Probab=96.39  E-value=0.031  Score=40.04  Aligned_cols=47  Identities=23%  Similarity=0.353  Sum_probs=36.5

Q ss_pred             EEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEec-CCCEEEEEEEEec
Q 019269           44 LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTT-PDGKVMDLFFVTD   90 (343)
Q Consensus        44 I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~-~~g~~~d~f~V~~   90 (343)
                      +.+.++|+||.+++++..|+++|+||.+...... .++...-.+.+.+
T Consensus         2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v~~   49 (71)
T cd04903           2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEVDQ   49 (71)
T ss_pred             EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEeCC
Confidence            5788999999999999999999999998877653 2455544455443

The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains

Probab=96.35  E-value=0.023  Score=40.33  Aligned_cols=46  Identities=24%  Similarity=0.321  Sum_probs=35.6

Q ss_pred             EEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecC-CCEEEEEEEEe
Q 019269           44 LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTP-DGKVMDLFFVT   89 (343)
Q Consensus        44 I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~-~g~~~d~f~V~   89 (343)
                      +.|..+|+||-+++++++|+++|+||.+...+... .|...-.|.+.
T Consensus         2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve   48 (65)
T cd04882           2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRTE   48 (65)
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeC
Confidence            67888999999999999999999999977765543 25554445443

Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria

Probab=96.30  E-value=0.032  Score=41.03  Aligned_cols=46  Identities=26%  Similarity=0.279  Sum_probs=34.7

Q ss_pred             EEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEec--CCCEEEEEEEEe
Q 019269           44 LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTT--PDGKVMDLFFVT   89 (343)
Q Consensus        44 I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~--~~g~~~d~f~V~   89 (343)
                      +.|..+|+||-|++++..|+.+|.||.+......  ..+.-.-.+.+.
T Consensus         2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~~~~~~~~~~~v~v~   49 (72)
T cd04884           2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFEDAPDGMRRVFIRVT   49 (72)
T ss_pred             EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccccCCCCccEEEEEEE
Confidence            6788999999999999999999999997765543  233333344443

This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria

Probab=96.29  E-value=0.005  Score=44.60  Aligned_cols=38  Identities=21%  Similarity=0.144  Sum_probs=31.4

Q ss_pred             EEEEeCCCccHHHHHHHHHHhCCceEEEEEeeccccCceE
Q 019269          271 VELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDRE  310 (343)
Q Consensus       271 ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~~~T~g~~~  310 (343)
                      +-+.+.||||+|.+|+.+|++.|+||.+....  +.++.+
T Consensus         2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~--~~~~~a   39 (69)
T cd04901           2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQ--TRGEIG   39 (69)
T ss_pred             EEEEecCCCcHHHHHHHHHHHcCCCHHHHhcc--CCCCEE
Confidence            45689999999999999999999999888766  544333

The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-

>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains

Probab=96.27  E-value=0.048  Score=37.98  Aligned_cols=46  Identities=30%  Similarity=0.451  Sum_probs=36.3

Q ss_pred             EEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEe
Q 019269           44 LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVT   89 (343)
Q Consensus        44 I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~   89 (343)
                      |.|.++|+||.+++++..|..++++|.+..+....+++..-.|.+.
T Consensus         1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~   46 (71)
T cd04876           1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLE   46 (71)
T ss_pred             CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEE
Confidence            4678999999999999999999999999888775435544445444

ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i

>PRK04435 hypothetical protein; Provisional

Probab=96.23  E-value=0.066  Score=45.51  Aligned_cols=55  Identities=22%  Similarity=0.198  Sum_probs=45.1

Q ss_pred             CCCCCEEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEec
Q 019269           36 PKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTD   90 (343)
Q Consensus        36 ~~~~~~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~   90 (343)
                      ...+....|.+...|+||++++|+.+|+.+|+||..-......+|.+--.|.+..
T Consensus        64 ~~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVev  118 (147)
T PRK04435         64 MVKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDT  118 (147)
T ss_pred             cCCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEe
Confidence            4667788999999999999999999999999999977765544676655666654

>PRK08577 hypothetical protein; Provisional

Probab=96.22  E-value=0.066  Score=44.75  Aligned_cols=69  Identities=20%  Similarity=0.217  Sum_probs=48.3

Q ss_pred             CCCEEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecC-CCEEEEEEEEecCCCcccchhHHHHHHHHHHH
Q 019269           38 PSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTP-DGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT  110 (343)
Q Consensus        38 ~~~~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~-~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~  110 (343)
                      ....+.|.|.+.|+||+|++++.+|+.+|.||.+....+.. ++.+.-.|.+.-+..    +..++.+.+.|.+
T Consensus        53 ~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~~----~~~l~~l~~~L~~  122 (136)
T PRK08577         53 GKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKS----DIDLEELEEELKK  122 (136)
T ss_pred             CccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCCc----hhhHHHHHHHHHc
Confidence            34478999999999999999999999999999988877654 454444444443211    1234555555544

>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=96.11  E-value=0.03  Score=41.49  Aligned_cols=46  Identities=15%  Similarity=0.015  Sum_probs=35.1

Q ss_pred             EEEeCCCccHHHHHHHHHHhCCceEEEEEeeccccCceEeeeeEEEEEc
Q 019269          272 ELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDE  320 (343)
Q Consensus       272 eV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~~~T~g~~~~dv~~F~v~~  320 (343)
                      -+...|+||-|++|..+|+++|+||.+.... |..+....  |.|||.-
T Consensus         3 ~~~l~d~pG~L~~vL~~f~~~~vni~~I~Sr-p~~~~~~~--~~f~id~   48 (75)
T cd04880           3 VFSLKNKPGALAKALKVFAERGINLTKIESR-PSRKGLWE--YEFFVDF   48 (75)
T ss_pred             EEEeCCcCCHHHHHHHHHHHCCCCEEEEEee-ecCCCCce--EEEEEEE
Confidence            3455799999999999999999999999544 55554444  3488853

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech

>PRK07431 aspartate kinase; Provisional

Probab=96.10  E-value=2.2  Score=44.45  Aligned_cols=114  Identities=11%  Similarity=0.092  Sum_probs=69.5

Q ss_pred             CeEEEEEEEC---CcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCC
Q 019269          175 GHTLVQIVCQ---DHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQP  251 (343)
Q Consensus       175 ~~t~i~V~~~---DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~~L~~~  251 (343)
                      +...|.|.+.   +++|+++++..+|++.|+||....  +  .. .-. +|.+.        ++..++..+.|.+.+...
T Consensus       347 ~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~--s--Se-~~I-s~vv~--------~~d~~~av~~Lh~~f~~~  412 (587)
T PRK07431        347 NVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMIS--T--SE-VKV-SCVID--------AEDGDKALRAVCEAFELE  412 (587)
T ss_pred             CeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE--c--CC-CEE-EEEEc--------HHHHHHHHHHHHHHhccC
Confidence            4567888875   789999999999999999997433  2  22 211 24443        223345555566666432


Q ss_pred             cc-eeeecC-----CC-Cceeeee---eeEEEE-eCCCccHHHHHHHHHHhCCceEEEEEee
Q 019269          252 LR-VTVVSR-----GP-DTELLVA---NPVELS-GKGRPLVFHDITLALKMLDICIFSAEIG  302 (343)
Q Consensus       252 ~~-~~~~~~-----~~-~~~v~~~---~~ieV~-~~DrpGLL~~I~~~l~~~gi~I~~AkI~  302 (343)
                      .. .++.+-     +. -+.+...   ..++|. ..++||++++|...|.++|++|.....+
T Consensus       413 ~~~~~~~~~~~~~~~~~v~gIa~~~~~~~i~l~~~~~~~g~~a~if~~l~~~~i~id~i~~~  474 (587)
T PRK07431        413 DSQIEINPTASGQDEPEVRGVALDRNQAQLAIRNVPDRPGMAASIFGALAEANISVDMIVQS  474 (587)
T ss_pred             CcccccCccccCCCCCcEEEEEccCCEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEec
Confidence            21 111111     00 0111111   134443 4588999999999999999999998664

>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

Probab=96.08  E-value=0.054  Score=35.75  Aligned_cols=34  Identities=38%  Similarity=0.500  Sum_probs=30.8

Q ss_pred             EEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEec
Q 019269           44 LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTT   77 (343)
Q Consensus        44 I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~   77 (343)
                      |.+.++|++|.+++++++|..+|++|........
T Consensus         1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~   34 (60)
T cd02116           1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTS   34 (60)
T ss_pred             CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEc
Confidence            4688999999999999999999999998887664

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p

>PRK04435 hypothetical protein; Provisional

Probab=96.06  E-value=0.066  Score=45.49  Aligned_cols=71  Identities=10%  Similarity=0.079  Sum_probs=48.7

Q ss_pred             EeCCCCCeEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHH
Q 019269          169 DNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRL  244 (343)
Q Consensus       169 ~~~~~~~~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L  244 (343)
                      ..........|.+...|+||+|++|++++++.|+||....... ..++.+.-.|.+...+.    ...++.|.++|
T Consensus        62 ~~~~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i-~~~g~a~vs~tVevs~~----~~~L~~Li~~L  132 (147)
T PRK04435         62 DEMVKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSI-PLQGRANVTISIDTSSM----EGDIDELLEKL  132 (147)
T ss_pred             cccCCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEc-CCCCEEEEEEEEEeCCh----HHHHHHHHHHH
Confidence            3445567789999999999999999999999999999665432 23455555566642111    12455565555

>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=96.05  E-value=0.017  Score=42.12  Aligned_cols=47  Identities=13%  Similarity=0.225  Sum_probs=35.4

Q ss_pred             EEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEe
Q 019269          179 VQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ  225 (343)
Q Consensus       179 i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~  225 (343)
                      +.+..+|+||.++++++.|+++|+||.+........++...-+|.++
T Consensus         2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~   48 (73)
T cd04902           2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVD   48 (73)
T ss_pred             EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeC
Confidence            45689999999999999999999999977764311345555445554

The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden

>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

Probab=96.02  E-value=0.044  Score=36.20  Aligned_cols=32  Identities=28%  Similarity=0.310  Sum_probs=29.9

Q ss_pred             EEEEeCCCccHHHHHHHHHHhCCceEEEEEee
Q 019269          271 VELSGKGRPLVFHDITLALKMLDICIFSAEIG  302 (343)
Q Consensus       271 ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~  302 (343)
                      +.+.+.|+||++.+|..+|+++|++|......
T Consensus         1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~   32 (60)
T cd02116           1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQR   32 (60)
T ss_pred             CEEEecCCCchHHHHHHHHHHCCCcEEEEEeE
Confidence            46789999999999999999999999999987

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p

>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=95.99  E-value=0.013  Score=43.52  Aligned_cols=70  Identities=16%  Similarity=0.290  Sum_probs=50.4

Q ss_pred             EEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEe-c-CCCCCCChHHHHHHHHHHHHHH
Q 019269          179 VQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-A-DGKKIVDPSKQNGLSSRLWMEL  248 (343)
Q Consensus       179 i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~-~-~g~~i~~~~~~~~l~~~L~~~L  248 (343)
                      |++.++-||-.||+++-+|+.+|+-|.+|.|.....+++...+|.+. . .+..+.......++.+.+...+
T Consensus         3 VElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~~~~~~~~~~r~~i~drv~~~l   74 (77)
T cd04898           3 VELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEHDRLKLGGRQRSKVVDRVTKTL   74 (77)
T ss_pred             ccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCCCccccchHHHHHHHHHHHHHH
Confidence            67889999999999999999999999999997544566777776653 3 3333443434455666555443

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a

Probab=95.81  E-value=0.051  Score=39.02  Aligned_cols=33  Identities=18%  Similarity=0.387  Sum_probs=30.2

Q ss_pred             EEEEEECCcccHHHHHHHHHHhCCeeEEEEEEE
Q 019269          178 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFS  210 (343)
Q Consensus       178 ~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~  210 (343)
                      ++.+.++|+||.+++++..|+++++||.+....
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~   34 (72)
T cd04874           2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQF   34 (72)
T ss_pred             eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEe
Confidence            578899999999999999999999999977765

a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains

Probab=95.78  E-value=0.086  Score=36.66  Aligned_cols=35  Identities=23%  Similarity=0.273  Sum_probs=31.5

Q ss_pred             EEEEeCCCccHHHHHHHHHHhCCceEEEEEeeccccC
Q 019269          271 VELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIG  307 (343)
Q Consensus       271 ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~~~T~g  307 (343)
                      +.|.+.|+||++.+|+..|.+++++|....+.  ..+
T Consensus         1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~--~~~   35 (71)
T cd04876           1 IRVEAIDRPGLLADITTVIAEEKINILSVNTR--TDD   35 (71)
T ss_pred             CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeE--ECC
Confidence            46789999999999999999999999999988  555

ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i

>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria

Probab=95.70  E-value=0.016  Score=41.90  Aligned_cols=45  Identities=13%  Similarity=0.133  Sum_probs=35.5

Q ss_pred             EEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEe
Q 019269           44 LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVT   89 (343)
Q Consensus        44 I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~   89 (343)
                      +.+.+.|+||++++++.+|++.|.||......+. +|.+.-.|.+.
T Consensus         2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~-~~~a~~~~~~~   46 (69)
T cd04901           2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTR-GEIGYVVIDID   46 (69)
T ss_pred             EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCC-CCEEEEEEEcC
Confidence            6778999999999999999999999987655442 36665555544

The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-

>PRK06635 aspartate kinase; Reviewed

Probab=95.70  E-value=1.4  Score=43.43  Aligned_cols=111  Identities=21%  Similarity=0.287  Sum_probs=67.5

Q ss_pred             CCEEEEEEEE-cCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEecCCCcccchhHHHHHHHHHHHHhccccc
Q 019269           39 SDVFLLKLSC-YDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMI  117 (343)
Q Consensus        39 ~~~~~I~V~~-~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~~l~~~~~  117 (343)
                      .+...|+|.+ .+++|.++++..+|.++|+||.--..+...+|..--.|.|..        ++.+...+.|.+ +.... 
T Consensus       260 ~~v~~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~--------~~~~~a~~~L~~-~~~~~-  329 (404)
T PRK06635        260 KDEAKVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPR--------DDLEKALELLEE-VKDEI-  329 (404)
T ss_pred             CCeEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcH--------HHHHHHHHHHHH-HHHHc-
Confidence            4445566665 778999999999999999999943332222223333455432        222333333333 11000 


Q ss_pred             ccccccccceeecccCCCCCCchHHHhhhcccCCCCCCCCCCCCCccEEEEEeCCCCCeEEEEEEE---CCcccHHHHHH
Q 019269          118 SCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVC---QDHKGLLYDIM  194 (343)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~i~V~~---~DrpGLl~~i~  194 (343)
                                           .                       ...+.+.    .+...++|.+   +++||.++++.
T Consensus       330 ---------------------~-----------------------~~~i~~~----~~ia~isvvG~~~~~~~g~~a~i~  361 (404)
T PRK06635        330 ---------------------G-----------------------AESVTYD----DDIAKVSVVGVGMRSHPGVAAKMF  361 (404)
T ss_pred             ---------------------C-----------------------cceEEEc----CCeEEEEEECCCCCCCchHHHHHH
Confidence                                 0                       0112221    2456777766   68999999999


Q ss_pred             HHHHhCCeeEEEE
Q 019269          195 RTLKDYNIQVSYG  207 (343)
Q Consensus       195 ~~L~~~glnI~~A  207 (343)
                      ++|++.|+||...
T Consensus       362 ~~La~~~Ini~~i  374 (404)
T PRK06635        362 EALAEEGINIQMI  374 (404)
T ss_pred             HHHHHCCCCEEEE
Confidence            9999999999853

>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH)

Probab=95.64  E-value=0.081  Score=41.12  Aligned_cols=67  Identities=12%  Similarity=0.045  Sum_probs=45.7

Q ss_pred             eEEEEeCCCccHHHHHHHHHHhCCceEEEEEeeccccCceEeeeeEEEEEcCCCCCCCc--hHHHHHHHHHHcC
Q 019269          270 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPR--NKIEEGVWKLLMG  341 (343)
Q Consensus       270 ~ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~~~T~g~~~~dv~~F~v~~~~g~~l~~--~~~~~~l~~~L~~  341 (343)
                      .+-+..+|+||-|+++-..|+++|||+.+.... |..+..-+  |.|||. -+|. .++  .+..++|++.|-.
T Consensus        16 slif~l~~~pGsL~~vL~~Fa~~~INLt~IeSR-P~~~~~~~--Y~FfVD-ieg~-~~~~~~~~l~~L~~~~~~   84 (90)
T cd04931          16 SLIFSLKEEVGALAKVLRLFEEKDINLTHIESR-PSRLNKDE--YEFFIN-LDKK-SAPALDPIIKSLRNDIGA   84 (90)
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEec-cCCCCCce--EEEEEE-EEcC-CCHHHHHHHHHHHHHhCC
Confidence            455556899999999999999999999998876 33333322  458885 4454 222  2245666666543

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB

Probab=95.59  E-value=0.069  Score=38.85  Aligned_cols=49  Identities=20%  Similarity=0.283  Sum_probs=35.9

Q ss_pred             EEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEe
Q 019269          177 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ  225 (343)
Q Consensus       177 t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~  225 (343)
                      +.+.+..+|+||.+.+++++|+++|+||.+....-...++...-.|.+.
T Consensus         2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~   50 (72)
T cd04883           2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQ   50 (72)
T ss_pred             cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEe
Confidence            4688899999999999999999999999977654211233444344443

This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B

Probab=95.53  E-value=0.053  Score=39.14  Aligned_cols=56  Identities=11%  Similarity=0.127  Sum_probs=35.7

Q ss_pred             CcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHHHH
Q 019269          185 DHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWM  246 (343)
Q Consensus       185 DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~  246 (343)
                      |+||.|.+|+++|...|+||.+..+.....++...-++.+..+      +...+.|.+.|.+
T Consensus         1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~~------~~~i~~l~~Ql~K   56 (63)
T PF13710_consen    1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSGD------DREIEQLVKQLEK   56 (63)
T ss_dssp             SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES-------CCHHHHHHHHHHC
T ss_pred             CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEeeC------chhHHHHHHHHhc
Confidence            7899999999999999999998888742234444433333321      1244566666543

>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB

Probab=95.42  E-value=0.11  Score=37.84  Aligned_cols=48  Identities=21%  Similarity=0.307  Sum_probs=37.9

Q ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEec-CCCEEEEEEEEe
Q 019269           42 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTT-PDGKVMDLFFVT   89 (343)
Q Consensus        42 ~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~-~~g~~~d~f~V~   89 (343)
                      +.+.+..+|+||.+++++..|+.+|+||.+....-. .++...-.|.+.
T Consensus         2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~   50 (72)
T cd04883           2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQ   50 (72)
T ss_pred             cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEe
Confidence            478899999999999999999999999997765443 245665556654

This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria

Probab=95.40  E-value=0.048  Score=40.01  Aligned_cols=32  Identities=13%  Similarity=0.145  Sum_probs=29.8

Q ss_pred             EEEEeCCCccHHHHHHHHHHhCCceEEEEEee
Q 019269          271 VELSGKGRPLVFHDITLALKMLDICIFSAEIG  302 (343)
Q Consensus       271 ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~  302 (343)
                      +.|.-+|+||-|++++..|+++|+||.+....
T Consensus         2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~   33 (72)
T cd04884           2 FTFLLEDKPGTLKPVVDTLREFNARIISILTA   33 (72)
T ss_pred             EEEEecCCCccHHHHHHHHHHCCCeEEEEEec
Confidence            57888999999999999999999999998777

This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH)

Probab=95.33  E-value=0.22  Score=38.66  Aligned_cols=71  Identities=15%  Similarity=0.266  Sum_probs=46.7

Q ss_pred             CCCeEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCE-EEEEEEEecCCCCCCChHHHHHHHHHHHHHH
Q 019269          173 SPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNC-EIDLFIMQADGKKIVDPSKQNGLSSRLWMEL  248 (343)
Q Consensus       173 ~~~~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~-~~d~F~v~~~g~~i~~~~~~~~l~~~L~~~L  248 (343)
                      ....+.|.+..+|+||-|+++-..|+.+|+|+.  +|.++..... -.=.|+|+-+|.  .++ ..+.+-+.|...|
T Consensus        11 ~~~ktslif~l~~~pGsL~~vL~~Fa~~~INLt--~IeSRP~~~~~~~Y~FfVDieg~--~~~-~~~~~l~~L~~~~   82 (90)
T cd04931          11 KNGVISLIFSLKEEVGALAKVLRLFEEKDINLT--HIESRPSRLNKDEYEFFINLDKK--SAP-ALDPIIKSLRNDI   82 (90)
T ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHCCCCEE--EEEeccCCCCCceEEEEEEEEcC--CCH-HHHHHHHHHHHHh
Confidence            334577777779999999999999999999999  6665443222 223478875553  222 4444444544444

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit

Probab=95.24  E-value=0.1  Score=46.93  Aligned_cols=53  Identities=13%  Similarity=0.230  Sum_probs=43.0

Q ss_pred             CCCeEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEe
Q 019269          173 SPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ  225 (343)
Q Consensus       173 ~~~~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~  225 (343)
                      .+....+.+.-.|+||.+..|+.+|.++|+||...++.....|+.++-+..++
T Consensus       145 ~~~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~vD  197 (208)
T TIGR00719       145 RGEHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEID  197 (208)
T ss_pred             cCCccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEeC
Confidence            34456777888999999999999999999999999998655677777555554

This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.

>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=95.14  E-value=0.23  Score=36.68  Aligned_cols=63  Identities=11%  Similarity=0.102  Sum_probs=39.8

Q ss_pred             EEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCC-EEEEEEEEecCCCCCCChHHHHHHHHHHH
Q 019269          179 VQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGN-CEIDLFIMQADGKKIVDPSKQNGLSSRLW  245 (343)
Q Consensus       179 i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~-~~~d~F~v~~~g~~i~~~~~~~~l~~~L~  245 (343)
                      +.+..+|+||-|+++..+|+++|+||.+-  .++...+ ...-.|++.-++.. . +...+.+.+.|.
T Consensus         2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I--~Srp~~~~~~~~~f~id~~~~~-~-~~~~~~~l~~l~   65 (75)
T cd04880           2 LVFSLKNKPGALAKALKVFAERGINLTKI--ESRPSRKGLWEYEFFVDFEGHI-D-DPDVKEALEELK   65 (75)
T ss_pred             EEEEeCCcCCHHHHHHHHHHHCCCCEEEE--EeeecCCCCceEEEEEEEECCC-C-CHHHHHHHHHHH
Confidence            34556899999999999999999999944  4433322 33344777644421 1 234444545543

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech

>PRK07334 threonine dehydratase; Provisional

Probab=95.10  E-value=0.16  Score=50.34  Aligned_cols=65  Identities=20%  Similarity=0.219  Sum_probs=49.0

Q ss_pred             EEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEec----CCCEEEEEEEEecCCCcccchhHHHHHHHHHHH
Q 019269           41 VFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTT----PDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT  110 (343)
Q Consensus        41 ~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~----~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~  110 (343)
                      ...|.|.+.||+|+|++|+.+|+..+.||.+.+..+.    .++.+.-.|.+.-.     +.+.++++.+.|++
T Consensus       326 ~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~-----d~~~L~~vi~~Lr~  394 (403)
T PRK07334        326 LARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETR-----DAAHLQEVIAALRA  394 (403)
T ss_pred             EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeC-----CHHHHHHHHHHHHH
Confidence            4799999999999999999999999999999988764    45665555555431     34455666555555

>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=95.08  E-value=0.082  Score=39.30  Aligned_cols=49  Identities=10%  Similarity=0.013  Sum_probs=36.6

Q ss_pred             EEEEeCCCccHHHHHHHHHHhCCceEEEEEeeccccCceEeeeeEEEEEcCCC
Q 019269          271 VELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDG  323 (343)
Q Consensus       271 ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~~~T~g~~~~dv~~F~v~~~~g  323 (343)
                      +-+..+|+||-|+++-..|+++|||+.+.... |..+..-+  |.|||. -+|
T Consensus         3 l~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSR-P~~~~~~~--y~Ffvd-~~~   51 (74)
T cd04904           3 LIFSLKEEVGALARALKLFEEFGVNLTHIESR-PSRRNGSE--YEFFVD-CEV   51 (74)
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCcEEEEECC-CCCCCCce--EEEEEE-EEc
Confidence            34555899999999999999999999998876 44443333  458884 345

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy

>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes

Probab=95.06  E-value=0.08  Score=39.56  Aligned_cols=51  Identities=14%  Similarity=0.039  Sum_probs=37.8

Q ss_pred             EEEEeCCCccHHHHHHHHHHhCCceEEEEEeeccccCceEeeeeEEEEEcCCCCC
Q 019269          271 VELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLS  325 (343)
Q Consensus       271 ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~~~T~g~~~~dv~~F~v~~~~g~~  325 (343)
                      +-+..+|+||-|+++-..|+++|+|+.+.... |..+..-+  |.|||. -+|..
T Consensus         3 l~~~l~~~~g~L~~iL~~f~~~~inl~~IeSR-P~~~~~~~--y~F~id-~e~~~   53 (74)
T cd04929           3 VIFSLKNEVGGLAKALKLFQELGINVVHIESR-KSKRRSSE--FEIFVD-CECDQ   53 (74)
T ss_pred             EEEEcCCCCcHHHHHHHHHHHCCCCEEEEEec-cCCCCCce--EEEEEE-EEcCH
Confidence            34455899999999999999999999999876 34444433  458885 34543

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK07334 threonine dehydratase; Provisional

Probab=95.06  E-value=0.17  Score=50.10  Aligned_cols=66  Identities=9%  Similarity=0.068  Sum_probs=47.6

Q ss_pred             eEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEee---cCCEEEEEEEEecCCCCCCChHHHHHHHHHHHH
Q 019269          176 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQ---RGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWM  246 (343)
Q Consensus       176 ~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t---~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~  246 (343)
                      .+.|.|.+.||+|+|++|+.++++.++||.+....+..   .++.+.-.|.+.     +.+.++++++.+.|+.
T Consensus       326 ~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~-----V~d~~~L~~vi~~Lr~  394 (403)
T PRK07334        326 LARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIE-----TRDAAHLQEVIAALRA  394 (403)
T ss_pred             EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEE-----eCCHHHHHHHHHHHHH
Confidence            47999999999999999999999999999988775310   234544445554     2234566777777643

>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B

Probab=95.04  E-value=0.11  Score=37.51  Aligned_cols=55  Identities=22%  Similarity=0.342  Sum_probs=37.0

Q ss_pred             CCCcHHHHHHHHHHhCCCeEEEEEEEecCC-CEEEEEEEEecCCCcccchhHHHHHHHHHHH
Q 019269           50 DRKGLLYDVTAVLCELELTIEKVKISTTPD-GKVMDLFFVTDTRELLHTRKRKEDTYEHLKT  110 (343)
Q Consensus        50 Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~-g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~  110 (343)
                      |+||.|.+++++|...|+||.+-.+....+ +..--.+.+..      ++...+.|.+.|.+
T Consensus         1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~------~~~~i~~l~~Ql~K   56 (63)
T PF13710_consen    1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSG------DDREIEQLVKQLEK   56 (63)
T ss_dssp             SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES-------CCHHHHHHHHHHC
T ss_pred             CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEee------CchhHHHHHHHHhc
Confidence            789999999999999999999988877544 44333344432      12345666666665

>PRK06635 aspartate kinase; Reviewed

Probab=94.95  E-value=0.36  Score=47.70  Aligned_cols=107  Identities=18%  Similarity=0.122  Sum_probs=63.6

Q ss_pred             eEEEEEE-ECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCCcce
Q 019269          176 HTLVQIV-CQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLRV  254 (343)
Q Consensus       176 ~t~i~V~-~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~~L~~~~~~  254 (343)
                      ...|+|. ..++||+++++..+|++.|+||....... +.++...-.|.+..        +..+...+.|.+ +......
T Consensus       262 v~~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~-~~~~~~~is~~v~~--------~~~~~a~~~L~~-~~~~~~~  331 (404)
T PRK06635        262 EAKVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNV-SEDGKTDITFTVPR--------DDLEKALELLEE-VKDEIGA  331 (404)
T ss_pred             eEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecC-CCCCceeEEEEEcH--------HHHHHHHHHHHH-HHHHcCc
Confidence            3445544 46789999999999999999999543221 11112333355431        122233333433 1111111


Q ss_pred             eeecCCCCceeee---eeeEEEEe---CCCccHHHHHHHHHHhCCceEEEEE
Q 019269          255 TVVSRGPDTELLV---ANPVELSG---KGRPLVFHDITLALKMLDICIFSAE  300 (343)
Q Consensus       255 ~~~~~~~~~~v~~---~~~ieV~~---~DrpGLL~~I~~~l~~~gi~I~~Ak  300 (343)
                              ..+.+   -..+.|.+   .|+||++++|.++|++.|+||....
T Consensus       332 --------~~i~~~~~ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i~  375 (404)
T PRK06635        332 --------ESVTYDDDIAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMIS  375 (404)
T ss_pred             --------ceEEEcCCeEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEEE
Confidence                    01111   12567766   5999999999999999999998853

>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional

Probab=94.84  E-value=0.22  Score=52.88  Aligned_cols=65  Identities=17%  Similarity=0.167  Sum_probs=47.3

Q ss_pred             CeEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHH
Q 019269          175 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRL  244 (343)
Q Consensus       175 ~~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L  244 (343)
                      ....|.|.+.||+|||++|+.+++..++||.+..+.+...++.+.-.|.+.     +.+...+.++...|
T Consensus       665 ~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ie-----V~~~~~L~~l~~~L  729 (743)
T PRK10872        665 YSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIE-----IYNLQVLGRVLGKL  729 (743)
T ss_pred             eEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEE-----ECCHHHHHHHHHHH
Confidence            345889999999999999999999999999988876321145555556554     23344566666665

>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=94.81  E-value=0.025  Score=43.30  Aligned_cols=60  Identities=22%  Similarity=0.161  Sum_probs=42.2

Q ss_pred             EEEEEEcC-CCcHHHHHHHHHHhCCCeEEEEEEEecCC----------CEEEEEEEEecCCCcccchhHHHHHHHHHHH
Q 019269           43 LLKLSCYD-RKGLLYDVTAVLCELELTIEKVKISTTPD----------GKVMDLFFVTDTRELLHTRKRKEDTYEHLKT  110 (343)
Q Consensus        43 ~I~V~~~D-r~GLl~~i~~~L~~~glnI~~A~i~T~~~----------g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~  110 (343)
                      .|+|.++| ..|++++++++|+.+|+||.  +|.+..+          ....-.|.|..+.      ...+.+++.|..
T Consensus         1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~--~I~~l~~~~~~~~~~~~~~~~~e~~v~~~~------~~~~~lr~~L~~   71 (84)
T cd04871           1 IVTLLGRPLTAEQLAAVTRVVADQGLNID--RIRRLSGRVPLEEQDDSPKACVEFSVRGQP------ADLEALRAALLE   71 (84)
T ss_pred             CEEEEcCcCCHHHHHHHHHHHHHcCCCHH--HHHHhhccccccccCCCCcEEEEEEEeCCC------CCHHHHHHHHHH
Confidence            48999999 99999999999999999998  4433311          1334456665321      234677777765

The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains

>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit

Probab=94.60  E-value=0.13  Score=46.22  Aligned_cols=54  Identities=17%  Similarity=0.129  Sum_probs=42.2

Q ss_pred             eEEEEeCCCccHHHHHHHHHHhCCceEEEEEeeccccCceEeeeeEEEEEcCCCCCCCch
Q 019269          270 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRN  329 (343)
Q Consensus       270 ~ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~~~T~g~~~~dv~~F~v~~~~g~~l~~~  329 (343)
                      .+-+.-.||||.+..|+..|.++||||..+.+.|...|+.|     .++..- +++++++
T Consensus       150 ~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~A-----i~vl~v-D~~v~~~  203 (208)
T TIGR00719       150 AILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIA-----LLTIEI-DKNIDDH  203 (208)
T ss_pred             EEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEE-----EEEEEe-CCCCCHH
Confidence            56677799999999999999999999999999976677766     344444 3445544

This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.

>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class

Probab=94.56  E-value=4.7  Score=39.77  Aligned_cols=107  Identities=21%  Similarity=0.308  Sum_probs=66.2

Q ss_pred             CCEEEEEEE---EcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEecCCCcccchhHHHHHHHHHHHHhccc
Q 019269           39 SDVFLLKLS---CYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNA  115 (343)
Q Consensus        39 ~~~~~I~V~---~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~~l~~~  115 (343)
                      .+...|+|.   ..+++|.++++..+|..+|+||..  +.+...+.. -.|.|.        .+..++..+.|.+.+.. 
T Consensus       258 ~~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~--i~~~~s~~~-Is~~V~--------~~d~~~a~~~L~~~~~~-  325 (401)
T TIGR00656       258 KNVTRVTVHGLGMLGKRGFLARIFGALAERNINVDL--ISQTPSETS-ISLTVD--------ETDADEAVRALKDQSGA-  325 (401)
T ss_pred             CCEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEE--EEcCCCCce-EEEEEe--------HHHHHHHHHHHHHHHHh-
Confidence            445568887   467899999999999999999983  333111111 124442        22233333333332210 


Q ss_pred             ccccccccccceeecccCCCCCCchHHHhhhcccCCCCCCCCCCCCCccEEEEEeCCCCCeEEEEEEEC---CcccHHHH
Q 019269          116 MISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQ---DHKGLLYD  192 (343)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~i~V~~~---DrpGLl~~  192 (343)
                                  .          .                       ...+.+    ..+...|.|.+.   ++||++++
T Consensus       326 ------------~----------~-----------------------~~~i~~----~~~~a~IsvVG~~~~~~~g~~a~  356 (401)
T TIGR00656       326 ------------A----------G-----------------------LDRVEV----EEGLAKVSIVGAGMVGAPGVASE  356 (401)
T ss_pred             ------------c----------C-----------------------CceEEE----eCCeEEEEEECCCcccCccHHHH
Confidence                        0          0                       011222    234567788774   78999999


Q ss_pred             HHHHHHhCCeeEEE
Q 019269          193 IMRTLKDYNIQVSY  206 (343)
Q Consensus       193 i~~~L~~~glnI~~  206 (343)
                      +..+|++.|+||..
T Consensus       357 i~~~L~~~gIni~~  370 (401)
T TIGR00656       357 IFSALEEKNINILM  370 (401)
T ss_pred             HHHHHHHCCCcEEE
Confidence            99999999999983

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.

>COG1707 ACT domain-containing protein [General function prediction only]

Probab=94.28  E-value=0.16  Score=43.69  Aligned_cols=42  Identities=14%  Similarity=0.318  Sum_probs=35.9

Q ss_pred             EEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEE
Q 019269          178 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEI  219 (343)
Q Consensus       178 ~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~  219 (343)
                      -+.+.+.++||.|.+++++++++|.||..|+.+...+|..+.
T Consensus         4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~   45 (218)
T COG1707           4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKAL   45 (218)
T ss_pred             eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEE
Confidence            477889999999999999999999999999988644554555

>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional

Probab=94.18  E-value=0.36  Score=51.35  Aligned_cols=65  Identities=15%  Similarity=0.203  Sum_probs=48.3

Q ss_pred             EEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecC-CCEEEEEEEEecCCCcccchhHHHHHHHHHHH
Q 019269           41 VFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTP-DGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT  110 (343)
Q Consensus        41 ~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~-~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~  110 (343)
                      ...|.|.+.||+|+|++|+.+++..++||.+.++.+.. ++.+.-.|.|.-.     +...+.++-..|++
T Consensus       666 ~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~-----~~~~L~~l~~~L~~  731 (743)
T PRK10872        666 SLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIY-----NLQVLGRVLGKLNQ  731 (743)
T ss_pred             EEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEEC-----CHHHHHHHHHHHhc
Confidence            35888999999999999999999999999999987744 5766556665432     24445555555544

>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional

Probab=94.08  E-value=0.39  Score=50.96  Aligned_cols=65  Identities=12%  Similarity=0.221  Sum_probs=47.8

Q ss_pred             EEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEecCCCcccchhHHHHHHHHHHH
Q 019269           41 VFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT  110 (343)
Q Consensus        41 ~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~  110 (343)
                      ...|.|.+.||+|+|++|+.+++..++||.+.+..+..++.+...|.+.-.     +...+++|-..|+.
T Consensus       626 ~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV~-----~~~~L~~i~~~Lr~  690 (702)
T PRK11092        626 IAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTAR-----DRVHLANIMRKIRV  690 (702)
T ss_pred             EEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEEC-----CHHHHHHHHHHHhC
Confidence            458889999999999999999999999999999877555665555555431     23445555444443

>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class

Probab=94.05  E-value=1.4  Score=43.38  Aligned_cols=105  Identities=24%  Similarity=0.224  Sum_probs=64.4

Q ss_pred             CeEEEEEE---ECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcC-
Q 019269          175 GHTLVQIV---CQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQ-  250 (343)
Q Consensus       175 ~~t~i~V~---~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~~L~~-  250 (343)
                      +...|+|.   ..+++|+++++..+|++.|+||.....   +..+ ..-.|.+..        +..++..+.|.+.+.. 
T Consensus       259 ~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~---~~s~-~~Is~~V~~--------~d~~~a~~~L~~~~~~~  326 (401)
T TIGR00656       259 NVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQ---TPSE-TSISLTVDE--------TDADEAVRALKDQSGAA  326 (401)
T ss_pred             CEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEc---CCCC-ceEEEEEeH--------HHHHHHHHHHHHHHHhc
Confidence            45677777   467899999999999999999984322   1111 111245531        1223334444443311 


Q ss_pred             C-cceeeecCCCCceeeeeeeEEEEeC---CCccHHHHHHHHHHhCCceEEEE
Q 019269          251 P-LRVTVVSRGPDTELLVANPVELSGK---GRPLVFHDITLALKMLDICIFSA  299 (343)
Q Consensus       251 ~-~~~~~~~~~~~~~v~~~~~ieV~~~---DrpGLL~~I~~~l~~~gi~I~~A  299 (343)
                      . ..+.. .+.    +   ..|.|.+.   ++||+++++.++|.+.|+||...
T Consensus       327 ~~~~i~~-~~~----~---a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~i  371 (401)
T TIGR00656       327 GLDRVEV-EEG----L---AKVSIVGAGMVGAPGVASEIFSALEEKNINILMI  371 (401)
T ss_pred             CCceEEE-eCC----e---EEEEEECCCcccCccHHHHHHHHHHHCCCcEEEE
Confidence            0 00100 111    1   25667775   89999999999999999999853

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.

>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional

Probab=93.96  E-value=0.44  Score=50.52  Aligned_cols=64  Identities=8%  Similarity=0.123  Sum_probs=46.6

Q ss_pred             CeEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHH
Q 019269          175 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRL  244 (343)
Q Consensus       175 ~~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L  244 (343)
                      ..+.|.|.+.||+|+|++|+.+++..++||.++...+ ..++.+.-.|.+.     +.+.+.+..|...|
T Consensus       625 ~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~-~~~~~~~~~~~ie-----V~~~~~L~~i~~~L  688 (702)
T PRK11092        625 FIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEE-KDGRVYSAFIRLT-----ARDRVHLANIMRKI  688 (702)
T ss_pred             eEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEE-cCCCEEEEEEEEE-----ECCHHHHHHHHHHH
Confidence            3458899999999999999999999999999888753 2334555455554     22344566666665

>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=93.84  E-value=0.45  Score=35.25  Aligned_cols=48  Identities=8%  Similarity=0.250  Sum_probs=35.1

Q ss_pred             EEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCE-EEEEEEEecCC
Q 019269          179 VQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNC-EIDLFIMQADG  228 (343)
Q Consensus       179 i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~-~~d~F~v~~~g  228 (343)
                      +.+..+|+||-|+++-..|+.+|+|+.  +|.++...+. ..=.|+|+-+|
T Consensus         3 l~f~l~~~pG~L~~vL~~f~~~~iNlt--~IeSRP~~~~~~~y~Ffvd~~~   51 (74)
T cd04904           3 LIFSLKEEVGALARALKLFEEFGVNLT--HIESRPSRRNGSEYEFFVDCEV   51 (74)
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCcEE--EEECCCCCCCCceEEEEEEEEc
Confidence            445558999999999999999999999  6665443322 23347787444

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy

>PRK11899 prephenate dehydratase; Provisional

Probab=93.73  E-value=0.24  Score=46.62  Aligned_cols=53  Identities=9%  Similarity=-0.012  Sum_probs=39.5

Q ss_pred             eeEEEEeCCCccHHHHHHHHHHhCCceEEEEEeeccccCceEeeeeEEEEEcCCCCC
Q 019269          269 NPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLS  325 (343)
Q Consensus       269 ~~ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~~~T~g~~~~dv~~F~v~~~~g~~  325 (343)
                      +.+-+..+|+||.|+++-.+|+++|||+.+..-. |+.+..-+  |.|||. -+|..
T Consensus       195 tsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSR-P~~~~~~~--Y~F~id-~eg~~  247 (279)
T PRK11899        195 TTFVFRVRNIPAALYKALGGFATNGVNMTKLESY-MVGGSFTA--TQFYAD-IEGHP  247 (279)
T ss_pred             EEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEee-ecCCCCce--EEEEEE-EECCC
Confidence            4455566899999999999999999999998876 44444433  348884 55654

>COG1707 ACT domain-containing protein [General function prediction only]

Probab=93.61  E-value=0.27  Score=42.32  Aligned_cols=40  Identities=23%  Similarity=0.263  Sum_probs=36.4

Q ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCE
Q 019269           42 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGK   81 (343)
Q Consensus        42 ~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~   81 (343)
                      .-+.+.+.|+||.|.++++.++++|.||..|+.|...+|.
T Consensus         3 ~~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~   42 (218)
T COG1707           3 RGLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGE   42 (218)
T ss_pred             ceeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCc
Confidence            3578899999999999999999999999999999987774

>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family

Probab=93.28  E-value=0.72  Score=48.91  Aligned_cols=64  Identities=13%  Similarity=0.074  Sum_probs=46.0

Q ss_pred             CeEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHH
Q 019269          175 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRL  244 (343)
Q Consensus       175 ~~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L  244 (343)
                      ..+.|.|.+.||+|+|++|+.+++..++||.+..+.+ ..++.+.-.|.+.     +.+-..+..|...|
T Consensus       609 f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~-~~~~~~~~~~~ie-----V~~~~~L~~ii~~L  672 (683)
T TIGR00691       609 FIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKT-YGKREAILNITVE-----IKNYKHLLKIMLKI  672 (683)
T ss_pred             eEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEE-cCCCEEEEEEEEE-----ECCHHHHHHHHHHH
Confidence            4568899999999999999999999999999888763 2234444445444     22344556665555

(p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.

>PRK06291 aspartate kinase; Provisional

Probab=93.26  E-value=1.9  Score=43.64  Aligned_cols=109  Identities=18%  Similarity=0.100  Sum_probs=66.4

Q ss_pred             CeEEEEEEEC---CcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCC
Q 019269          175 GHTLVQIVCQ---DHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQP  251 (343)
Q Consensus       175 ~~t~i~V~~~---DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~~L~~~  251 (343)
                      +...|+|.+.   +.+|+++++..+|+++|+||......  +..  .--.|.+..        +..++..+.|.+.+...
T Consensus       320 ~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~--sse--~sIsf~V~~--------~d~~~av~~L~~~~~~~  387 (465)
T PRK06291        320 NVALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQG--SSE--SNISLVVDE--------ADLEKALKALRREFGEG  387 (465)
T ss_pred             CEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEec--CCC--ceEEEEEeH--------HHHHHHHHHHHHHHHHh
Confidence            4567788764   68999999999999999999844221  111  111244442        12223334444444321


Q ss_pred             cceeeecCCCCceeeeeeeEEEEeC---CCccHHHHHHHHHHhCCceEEEEEe
Q 019269          252 LRVTVVSRGPDTELLVANPVELSGK---GRPLVFHDITLALKMLDICIFSAEI  301 (343)
Q Consensus       252 ~~~~~~~~~~~~~v~~~~~ieV~~~---DrpGLL~~I~~~l~~~gi~I~~AkI  301 (343)
                      ....+...   ..+   ..|.|.+.   +++|++.++..+|++.||+|....-
T Consensus       388 ~~~~i~~~---~~~---a~IsvvG~gm~~~~gv~~rif~aL~~~~I~v~~isq  434 (465)
T PRK06291        388 LVRDVTFD---KDV---CVVAVVGAGMAGTPGVAGRIFSALGESGINIKMISQ  434 (465)
T ss_pred             cCcceEEe---CCE---EEEEEEcCCccCCcChHHHHHHHHHHCCCCEEEEEe
Confidence            00000000   001   25777776   7999999999999999999986553

>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family

Probab=93.23  E-value=0.65  Score=49.24  Aligned_cols=49  Identities=22%  Similarity=0.307  Sum_probs=40.9

Q ss_pred             EEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEe
Q 019269           41 VFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVT   89 (343)
Q Consensus        41 ~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~   89 (343)
                      .+.|.|.+.||+|+|++|+.+++..+.||.+.++.+..++.+.-.|.|.
T Consensus       610 ~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ie  658 (683)
T TIGR00691       610 IVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVE  658 (683)
T ss_pred             EEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEE
Confidence            4588899999999999999999999999999998775556665555554

(p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.

>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=93.12  E-value=0.057  Score=41.31  Aligned_cols=30  Identities=13%  Similarity=0.233  Sum_probs=27.4

Q ss_pred             EEEEEECC-cccHHHHHHHHHHhCCeeEEEE
Q 019269          178 LVQIVCQD-HKGLLYDIMRTLKDYNIQVSYG  207 (343)
Q Consensus       178 ~i~V~~~D-rpGLl~~i~~~L~~~glnI~~A  207 (343)
                      +|+|.|+| +.|++++++++|+++|+||.+.
T Consensus         1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I   31 (84)
T cd04871           1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDRI   31 (84)
T ss_pred             CEEEEcCcCCHHHHHHHHHHHHHcCCCHHHH
Confidence            47899999 9999999999999999999743

The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains

>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH)

Probab=93.06  E-value=0.26  Score=40.11  Aligned_cols=51  Identities=14%  Similarity=0.009  Sum_probs=37.6

Q ss_pred             eEEEEeCCCccHHHHHHHHHHhCCceEEEEEeeccccCceEeeeeEEEEEcCCCC
Q 019269          270 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGL  324 (343)
Q Consensus       270 ~ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~~~T~g~~~~dv~~F~v~~~~g~  324 (343)
                      .+-+..+|+||-|++|-..|+++|||+.+....  ..+..-.+ |.|||. .+|.
T Consensus        43 Slifsl~~~pGsL~~iL~~Fa~~gINLt~IESR--P~~~~~~e-Y~FfId-ieg~   93 (115)
T cd04930          43 TLLFSLKEGFSSLSRILKVFETFEAKIHHLESR--PSRKEGGD-LEVLVR-CEVH   93 (115)
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECC--cCCCCCce-EEEEEE-EEeC
Confidence            445555899999999999999999999999877  44333333 458874 3454

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11899 prephenate dehydratase; Provisional

Probab=93.06  E-value=0.69  Score=43.57  Aligned_cols=52  Identities=12%  Similarity=0.238  Sum_probs=40.8

Q ss_pred             eEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCE-EEEEEEEecCCC
Q 019269          176 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNC-EIDLFIMQADGK  229 (343)
Q Consensus       176 ~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~-~~d~F~v~~~g~  229 (343)
                      .|.|.+..+|+||.|+++-.+|+++|+|+.  +|.++..++. ..=.|+++-+|.
T Consensus       194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLt--kIeSRP~~~~~~~Y~F~id~eg~  246 (279)
T PRK11899        194 VTTFVFRVRNIPAALYKALGGFATNGVNMT--KLESYMVGGSFTATQFYADIEGH  246 (279)
T ss_pred             eEEEEEEeCCCCChHHHHHHHHHHcCCCee--eEEeeecCCCCceEEEEEEEECC
Confidence            577777789999999999999999999999  6766654433 334688886654

>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=93.00  E-value=0.83  Score=33.08  Aligned_cols=30  Identities=17%  Similarity=0.231  Sum_probs=25.9

Q ss_pred             EEEEEcCCCcHHHHHHHHHHhCCCeEEEEEE
Q 019269           44 LKLSCYDRKGLLYDVTAVLCELELTIEKVKI   74 (343)
Q Consensus        44 I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i   74 (343)
                      +.|.-+||||-|.+++.+++. |.||.+-+-
T Consensus         1 ~~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~   30 (68)
T cd04885           1 FAVTFPERPGALKKFLELLGP-PRNITEFHY   30 (68)
T ss_pred             CEEECCCCCCHHHHHHHHhCC-CCcEEEEEE
Confidence            357789999999999999999 999996544

This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=92.75  E-value=0.18  Score=50.14  Aligned_cols=60  Identities=13%  Similarity=0.089  Sum_probs=47.4

Q ss_pred             eeEEEEeCCCccHHHHHHHHHHhCCceEEEEEeeccccCceEeeeeEEEEEcCCCCCCCchHHHHHHHH
Q 019269          269 NPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWK  337 (343)
Q Consensus       269 ~~ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~~~T~g~~~~dv~~F~v~~~~g~~l~~~~~~~~l~~  337 (343)
                      ..|-|.-.|+||.+..|+..|+++|+||...+..  ..|+.+     +++.+-++ +++++ ..++|++
T Consensus       339 ~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~--~~~~~A-----~~iie~D~-~~~~~-~~~~i~~  398 (409)
T PRK11790        339 HRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQ--TDGEIG-----YVVIDVDA-DYAEE-ALDALKA  398 (409)
T ss_pred             ceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheec--cCCCEE-----EEEEEeCC-CCcHH-HHHHHHc
Confidence            4678889999999999999999999999999999  888555     56666666 44434 5676663

>PRK06291 aspartate kinase; Provisional

Probab=92.62  E-value=13  Score=37.65  Aligned_cols=107  Identities=18%  Similarity=0.235  Sum_probs=65.7

Q ss_pred             CCEEEEEEEEc---CCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEecCCCcccchhHHHHHHHHHHHHhccc
Q 019269           39 SDVFLLKLSCY---DRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNA  115 (343)
Q Consensus        39 ~~~~~I~V~~~---Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~~l~~~  115 (343)
                      .+...|+|.+.   +.+|+++++..+|..+|+||.--...+  .+.- -.|.|..        ...++..+.|.+.+...
T Consensus       319 ~~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~s--se~s-Isf~V~~--------~d~~~av~~L~~~~~~~  387 (465)
T PRK06291        319 KNVALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGS--SESN-ISLVVDE--------ADLEKALKALRREFGEG  387 (465)
T ss_pred             CCEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecC--CCce-EEEEEeH--------HHHHHHHHHHHHHHHHh
Confidence            34567788764   689999999999999999998432222  2211 1244432        22233333333333210


Q ss_pred             ccccccccccceeecccCCCCCCchHHHhhhcccCCCCCCCCCCCCCccEEEEEeCCCCCeEEEEEEEC---CcccHHHH
Q 019269          116 MISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQ---DHKGLLYD  192 (343)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~i~V~~~---DrpGLl~~  192 (343)
                      .                                              ...|.+.    .+...|.|.|.   +++|+.++
T Consensus       388 ~----------------------------------------------~~~i~~~----~~~a~IsvvG~gm~~~~gv~~r  417 (465)
T PRK06291        388 L----------------------------------------------VRDVTFD----KDVCVVAVVGAGMAGTPGVAGR  417 (465)
T ss_pred             c----------------------------------------------CcceEEe----CCEEEEEEEcCCccCCcChHHH
Confidence            0                                              0012222    23567777775   78999999


Q ss_pred             HHHHHHhCCeeEEE
Q 019269          193 IMRTLKDYNIQVSY  206 (343)
Q Consensus       193 i~~~L~~~glnI~~  206 (343)
                      +..+|++.|+||..
T Consensus       418 if~aL~~~~I~v~~  431 (465)
T PRK06291        418 IFSALGESGINIKM  431 (465)
T ss_pred             HHHHHHHCCCCEEE
Confidence            99999999999983

>PRK08210 aspartate kinase I; Reviewed

Probab=92.51  E-value=3.5  Score=40.76  Aligned_cols=99  Identities=19%  Similarity=0.232  Sum_probs=62.3

Q ss_pred             CeEEEEEEECCc-ccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCCcc
Q 019269          175 GHTLVQIVCQDH-KGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLR  253 (343)
Q Consensus       175 ~~t~i~V~~~Dr-pGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~~L~~~~~  253 (343)
                      +...|+|...+. ||.+++|..+|+++|+||......   . ..  -+|.+..        +..+++.+.|.+ +..  .
T Consensus       270 ~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~---~-~~--is~~v~~--------~~~~~a~~~l~~-~~~--~  332 (403)
T PRK08210        270 NVTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIF---P-TE--VVFTVSD--------EDSEKAKEILEN-LGL--K  332 (403)
T ss_pred             CcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEec---C-ce--EEEEEcH--------HHHHHHHHHHHH-hCC--c
Confidence            445667766555 999999999999999999955321   1 11  1344431        122334333333 111  1


Q ss_pred             eeeecCCCCceeeeeeeEEEEeC---CCccHHHHHHHHHHhCCceEEE
Q 019269          254 VTVVSRGPDTELLVANPVELSGK---GRPLVFHDITLALKMLDICIFS  298 (343)
Q Consensus       254 ~~~~~~~~~~~v~~~~~ieV~~~---DrpGLL~~I~~~l~~~gi~I~~  298 (343)
                      +.+ ...    +   ..|.|.+.   ++||++.++..+|++.|++|..
T Consensus       333 v~~-~~~----~---a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~  372 (403)
T PRK08210        333 PSV-REN----C---AKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQ  372 (403)
T ss_pred             EEE-eCC----c---EEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEE
Confidence            111 111    1   25667765   8999999999999999999975

>PRK06382 threonine dehydratase; Provisional

Probab=92.17  E-value=1.1  Score=44.48  Aligned_cols=71  Identities=17%  Similarity=0.214  Sum_probs=51.1

Q ss_pred             CCCCCCEEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEE----ecCCCEEEEEEEEecCCCcccchhHHHHHHHHHHH
Q 019269           35 SPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKIS----TTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT  110 (343)
Q Consensus        35 ~~~~~~~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~----T~~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~  110 (343)
                      ...+...+.+.|..+|+||.|++++..|..+|.||.+-...    ....+...-+|.|...     +++..+.|.+.|++
T Consensus       324 ~~~~~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~-----~~~~~~~v~~~L~~  398 (406)
T PRK06382        324 LENLGQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVR-----GQDHLDRILNALRE  398 (406)
T ss_pred             HHhcCCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeC-----CHHHHHHHHHHHHH
Confidence            45566778999999999999999999999999999976654    2235566666766542     23334456555544

>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]

Probab=92.01  E-value=0.59  Score=43.85  Aligned_cols=56  Identities=9%  Similarity=-0.017  Sum_probs=41.7

Q ss_pred             eeeEEEEeCCCccHHHHHHHHHHhCCceEEEEEeeccccCceEeeeeEEEEEcCCCCCCC
Q 019269          268 ANPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVP  327 (343)
Q Consensus       268 ~~~ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~~~T~g~~~~dv~~F~v~~~~g~~l~  327 (343)
                      .|.+-+..+|+||-|+++-.+|+.+|||+.+.... |+.+.--.-.  ||| |-.|..=+
T Consensus       194 kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESR-P~k~~~~~Y~--F~i-D~eg~~~~  249 (279)
T COG0077         194 KTSLIFSVPNKPGALYKALGVFAKRGINLTKIESR-PLKTGLGEYL--FFI-DIEGHIDD  249 (279)
T ss_pred             eEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeec-ccCCCCeeEE--EEE-EEecCcCc
Confidence            45677777899999999999999999999998876 4554444444  777 45555433

>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D

Probab=91.99  E-value=0.94  Score=32.67  Aligned_cols=35  Identities=17%  Similarity=0.169  Sum_probs=29.2

Q ss_pred             CCEEEEEEEEc----CCCcHHHHHHHHHHhCCCeEEEEE
Q 019269           39 SDVFLLKLSCY----DRKGLLYDVTAVLCELELTIEKVK   73 (343)
Q Consensus        39 ~~~~~I~V~~~----Dr~GLl~~i~~~L~~~glnI~~A~   73 (343)
                      .+...|+|.++    |.||+.+++++.|+..|+||.-..
T Consensus         4 ~~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is   42 (65)
T PF13840_consen    4 EDWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS   42 (65)
T ss_dssp             SEEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE
T ss_pred             CCEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE
Confidence            45678999988    799999999999999999998433

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=91.91  E-value=0.5  Score=46.98  Aligned_cols=51  Identities=16%  Similarity=0.105  Sum_probs=42.7

Q ss_pred             CCCEEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEe
Q 019269           38 PSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVT   89 (343)
Q Consensus        38 ~~~~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~   89 (343)
                      ..+...|.+.-+|+||.+++++.+|+++|+||-.-+.++. ++.++-+|-+.
T Consensus       335 ~~~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~-~~~A~~iie~D  385 (409)
T PRK11790        335 HPGGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTD-GEIGYVVIDVD  385 (409)
T ss_pred             CCCCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccC-CCEEEEEEEeC
Confidence            3467788889999999999999999999999987788774 67887666554

>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]

Probab=91.89  E-value=0.85  Score=48.04  Aligned_cols=59  Identities=22%  Similarity=0.269  Sum_probs=44.0

Q ss_pred             cccCCCCCCCEEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEe
Q 019269           31 FFSFSPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVT   89 (343)
Q Consensus        31 ~~~~~~~~~~~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~   89 (343)
                      .|.......=.+.|.|.+.||+|+|++|+.+|+..+.||.+....+..++.+.-.|.+.
T Consensus       617 ~W~~~~~~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~  675 (701)
T COG0317         617 SWGPEYGQVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIE  675 (701)
T ss_pred             EecCCCCcceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEE
Confidence            45555444455689999999999999999999999999998888775344443334443

>PLN02551 aspartokinase

Probab=91.79  E-value=3.9  Score=41.97  Aligned_cols=110  Identities=16%  Similarity=0.205  Sum_probs=65.4

Q ss_pred             CCeEEEEEEEC---CcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHH---HHH
Q 019269          174 PGHTLVQIVCQ---DHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRL---WME  247 (343)
Q Consensus       174 ~~~t~i~V~~~---DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L---~~~  247 (343)
                      .+.+.|+|.+.   +.+|+++++...|+++|++|...  .+  ..  .--.|.+..+.  +..   .+.+++.+   ...
T Consensus       364 ~~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~I--ss--Se--~sIs~~v~~~~--~~~---~~~i~~~l~~l~~e  432 (521)
T PLN02551        364 RNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVV--AT--SE--VSISLTLDPSK--LWS---RELIQQELDHLVEE  432 (521)
T ss_pred             CCeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEE--ec--cC--CEEEEEEehhH--hhh---hhhHHHHHHHHHHH
Confidence            34577788765   68999999999999999999944  32  21  11235555221  111   11222222   122


Q ss_pred             HcCCcceeeecCCCCceeeeeeeEEEEeC--CCccHHHHHHHHHHhCCceEEEEEee
Q 019269          248 LLQPLRVTVVSRGPDTELLVANPVELSGK--GRPLVFHDITLALKMLDICIFSAEIG  302 (343)
Q Consensus       248 L~~~~~~~~~~~~~~~~v~~~~~ieV~~~--DrpGLL~~I~~~l~~~gi~I~~AkI~  302 (343)
                      |.....+.+ .    ..+   ..|.|.|.  .+||++.++-.+|++.||||......
T Consensus       433 l~~~~~V~v-~----~~v---AiISvVG~~~~~~gvaariF~aLa~~gInV~mIsqg  481 (521)
T PLN02551        433 LEKIAVVNL-L----QGR---SIISLIGNVQRSSLILEKVFRVLRTNGVNVQMISQG  481 (521)
T ss_pred             hhcCCeEEE-e----CCE---EEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEEec
Confidence            321111111 0    111   24556554  78999999999999999999887654

>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]

Probab=91.70  E-value=1.1  Score=47.18  Aligned_cols=46  Identities=22%  Similarity=0.143  Sum_probs=37.4

Q ss_pred             EEEEeC-CCCCeEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEE
Q 019269          166 VTIDNS-LSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSR  211 (343)
Q Consensus       166 V~i~~~-~~~~~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t  211 (343)
                      |.++.+ .....+.|.|.+.||+|+|.+|+++|+..++||......+
T Consensus       616 v~W~~~~~~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~  662 (701)
T COG0317         616 VSWGPEYGQVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRS  662 (701)
T ss_pred             EEecCCCCcceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccc
Confidence            344444 2345678999999999999999999999999999777653

>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes

Probab=91.41  E-value=1.7  Score=32.30  Aligned_cols=49  Identities=12%  Similarity=0.188  Sum_probs=35.3

Q ss_pred             EEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCC-EEEEEEEEecCCC
Q 019269          179 VQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGN-CEIDLFIMQADGK  229 (343)
Q Consensus       179 i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~-~~~d~F~v~~~g~  229 (343)
                      +.+..+|+||-|+++-..|+.+|+|+.  +|.++...+ ...=.|+|+-+|.
T Consensus         3 l~~~l~~~~g~L~~iL~~f~~~~inl~--~IeSRP~~~~~~~y~F~id~e~~   52 (74)
T cd04929           3 VIFSLKNEVGGLAKALKLFQELGINVV--HIESRKSKRRSSEFEIFVDCECD   52 (74)
T ss_pred             EEEEcCCCCcHHHHHHHHHHHCCCCEE--EEEeccCCCCCceEEEEEEEEcC
Confidence            445568999999999999999999999  666544322 2333578874443

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK08210 aspartate kinase I; Reviewed

Probab=91.31  E-value=16  Score=36.05  Aligned_cols=34  Identities=21%  Similarity=0.311  Sum_probs=27.3

Q ss_pred             CCEEEEEEEEcCC-CcHHHHHHHHHHhCCCeEEEE
Q 019269           39 SDVFLLKLSCYDR-KGLLYDVTAVLCELELTIEKV   72 (343)
Q Consensus        39 ~~~~~I~V~~~Dr-~GLl~~i~~~L~~~glnI~~A   72 (343)
                      .+...|+|...+. +|.++++...|..+|+||.--
T Consensus       269 ~~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i  303 (403)
T PRK08210        269 SNVTQIKVKAKENAYDLQQEVFKALAEAGISVDFI  303 (403)
T ss_pred             CCcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEE
Confidence            4455677766444 999999999999999999955

>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH)

Probab=90.61  E-value=1.7  Score=35.31  Aligned_cols=51  Identities=6%  Similarity=0.124  Sum_probs=37.6

Q ss_pred             eEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCE-EEEEEEEecCC
Q 019269          176 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNC-EIDLFIMQADG  228 (343)
Q Consensus       176 ~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~-~~d~F~v~~~g  228 (343)
                      .+.+.+..+|+||-|+++-..|+.+|+|+.  +|.++...+. -.=.|+|+-+|
T Consensus        41 ktSlifsl~~~pGsL~~iL~~Fa~~gINLt--~IESRP~~~~~~eY~FfIdieg   92 (115)
T cd04930          41 KATLLFSLKEGFSSLSRILKVFETFEAKIH--HLESRPSRKEGGDLEVLVRCEV   92 (115)
T ss_pred             cEEEEEEeCCCCcHHHHHHHHHHHCCCCEE--EEECCcCCCCCceEEEEEEEEe
Confidence            466777779999999999999999999999  6666544322 22247777444

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]

Probab=90.58  E-value=21  Score=36.03  Aligned_cols=109  Identities=21%  Similarity=0.211  Sum_probs=65.4

Q ss_pred             CCeEEEEEEECC---cccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcC
Q 019269          174 PGHTLVQIVCQD---HKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQ  250 (343)
Q Consensus       174 ~~~t~i~V~~~D---rpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~~L~~  250 (343)
                      .+.+.|+|.+..   .+|.+++|..+|+++|+|+..  |.+ ...+ ..-+|.+...        ...+..+.|.+....
T Consensus       305 ~~~~~i~v~~~~~~~~~g~~a~vf~~l~~~~i~v~~--I~q-~~~~-~~i~~~v~~~--------~~~~a~~~l~~~~~~  372 (447)
T COG0527         305 DNVALITVSGPGMNGMVGFAARVFGILAEAGINVDL--ITQ-SISE-VSISFTVPES--------DAPRALRALLEEKLE  372 (447)
T ss_pred             CCeEEEEEEccCccccccHHHHHHHHHHHcCCcEEE--EEe-ccCC-CeEEEEEchh--------hHHHHHHHHHHHHhh
Confidence            456677777543   459999999999999999983  322 1111 1134555421        112222333333322


Q ss_pred             Cc-ceeeecCCCCceeeeeeeEEEEeC---CCccHHHHHHHHHHhCCceEEEEEee
Q 019269          251 PL-RVTVVSRGPDTELLVANPVELSGK---GRPLVFHDITLALKMLDICIFSAEIG  302 (343)
Q Consensus       251 ~~-~~~~~~~~~~~~v~~~~~ieV~~~---DrpGLL~~I~~~l~~~gi~I~~AkI~  302 (343)
                      .. .+.+ .+.    +   ..|.+.+.   ..||+.+++..+|++.+|||.....+
T Consensus       373 ~~~~v~~-~~~----~---a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~issS  420 (447)
T COG0527         373 LLAEVEV-EEG----L---ALVSIVGAGMRSNPGVAARIFQALAEENINIIMISSS  420 (447)
T ss_pred             hcceEEe-eCC----e---eEEEEEccccccCcCHHHHHHHHHHhCCCcEEEEEcC
Confidence            21 1111 111    1   14566665   78999999999999999999988744

>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=90.55  E-value=2.7  Score=31.85  Aligned_cols=62  Identities=15%  Similarity=0.166  Sum_probs=36.8

Q ss_pred             EEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEecCCCcccchhHHHHHHHHHHH
Q 019269           43 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT  110 (343)
Q Consensus        43 ~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~  110 (343)
                      .+.|.-+|+||-|++++.+|.  +.||.+..-.....+.+--.+.+...++    ++..+.+.+.|++
T Consensus         3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~~~~----~~~~~~i~~~L~~   64 (85)
T cd04906           3 LLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSVANG----AEELAELLEDLKS   64 (85)
T ss_pred             EEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEeCCc----HHHHHHHHHHHHH
Confidence            467888999999999999999  6666643332222233333333332211    3445666666655

This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK09034 aspartate kinase; Reviewed

Probab=90.45  E-value=5.9  Score=39.95  Aligned_cols=138  Identities=17%  Similarity=0.200  Sum_probs=78.2

Q ss_pred             CeEEEEEEE---CCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCC
Q 019269          175 GHTLVQIVC---QDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQP  251 (343)
Q Consensus       175 ~~t~i~V~~---~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~~L~~~  251 (343)
                      +.+.|++.+   .+++|+++++...|+++|+||...  .  +. . .--.|.+..+.  +. ...+..+.+.|...+.. 
T Consensus       307 ~i~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~i--~--ss-~-~sis~~v~~~~--~~-~a~~~~l~~el~~~~~~-  376 (454)
T PRK09034        307 GFTSIYISKYLMNREVGFGRKVLQILEDHGISYEHM--P--SG-I-DDLSIIIRERQ--LT-PKKEDEILAEIKQELNP-  376 (454)
T ss_pred             CEEEEEEccCCCCCCccHHHHHHHHHHHcCCeEEEE--c--CC-C-cEEEEEEeHHH--hh-HHHHHHHHHHHHHhhCC-
Confidence            456677764   678999999999999999999853  2  11 1 22236665211  11 10112333333322210 


Q ss_pred             cceeeecCCCCceeeeeeeEEEEeC---CCccHHHHHHHHHHhCCceEEEEEeeccccCceEeeeeEEEEEcCCCCCCCc
Q 019269          252 LRVTVVSRGPDTELLVANPVELSGK---GRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPR  328 (343)
Q Consensus       252 ~~~~~~~~~~~~~v~~~~~ieV~~~---DrpGLL~~I~~~l~~~gi~I~~AkI~~~T~g~~~~dv~~F~v~~~~g~~l~~  328 (343)
                      ..+.. .+.    +   ..|.|.+.   ++||++.++..+|.+.||+|....-.  + .+  ..+ .|.|...+.     
T Consensus       377 ~~I~~-~~~----v---a~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~--~-Se--~~I-s~vV~~~d~-----  437 (454)
T PRK09034        377 DELEI-EHD----L---AIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQG--S-SE--ISI-MFGVKNEDA-----  437 (454)
T ss_pred             ceEEE-eCC----E---EEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEec--C-Cc--ceE-EEEEcHHHH-----
Confidence            01100 011    1   25677654   89999999999999999999988654  3 22  232 255543321     


Q ss_pred             hHHHHHHHHHHcC
Q 019269          329 NKIEEGVWKLLMG  341 (343)
Q Consensus       329 ~~~~~~l~~~L~~  341 (343)
                      .+....|.+++.+
T Consensus       438 ~~av~~LH~~f~~  450 (454)
T PRK09034        438 EKAVKAIYNAFFK  450 (454)
T ss_pred             HHHHHHHHHHHhc
Confidence            1234666666654

>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]

Probab=90.45  E-value=1.4  Score=41.43  Aligned_cols=53  Identities=17%  Similarity=0.323  Sum_probs=41.9

Q ss_pred             CeEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCE-EEEEEEEecCCC
Q 019269          175 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNC-EIDLFIMQADGK  229 (343)
Q Consensus       175 ~~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~-~~d~F~v~~~g~  229 (343)
                      ..|.|-+..+|+||-|+++-++|+.+|+|..  +|.++..+.. ..-.|+++-+|.
T Consensus       193 ~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlT--kIESRP~k~~~~~Y~F~iD~eg~  246 (279)
T COG0077         193 EKTSLIFSVPNKPGALYKALGVFAKRGINLT--KIESRPLKTGLGEYLFFIDIEGH  246 (279)
T ss_pred             ceEEEEEEcCCCCchHHHHHHHHHHcCccee--eEeecccCCCCeeEEEEEEEecC
Confidence            4788888999999999999999999999999  7776544433 334578885554

>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=90.31  E-value=1.3  Score=32.03  Aligned_cols=59  Identities=15%  Similarity=-0.029  Sum_probs=39.1

Q ss_pred             EEEeCCCccHHHHHHHHHHhCCceEEEEEeeccccCceEeeeeEEEEEcCCCCCCCchHHHHHHHHHHc
Q 019269          272 ELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLM  340 (343)
Q Consensus       272 eV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~~~T~g~~~~dv~~F~v~~~~g~~l~~~~~~~~l~~~L~  340 (343)
                      .|.-+||||-|.++.+.+++ |.||....=.  -.+.....+  ++.....+    ++ ..++|.++|.
T Consensus         2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~--~~~~~~~~v--~v~ie~~~----~~-~~~~i~~~L~   60 (68)
T cd04885           2 AVTFPERPGALKKFLELLGP-PRNITEFHYR--NQGGDEARV--LVGIQVPD----RE-DLAELKERLE   60 (68)
T ss_pred             EEECCCCCCHHHHHHHHhCC-CCcEEEEEEE--cCCCCceEE--EEEEEeCC----HH-HHHHHHHHHH
Confidence            46779999999999999999 9999988777  333333334  44432222    12 3466666654

This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>PLN02551 aspartokinase

Probab=90.25  E-value=24  Score=36.29  Aligned_cols=111  Identities=14%  Similarity=0.275  Sum_probs=66.7

Q ss_pred             CCCEEEEEEEEc---CCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEecCCCcccchhHHHHHHHHHHHHhcc
Q 019269           38 PSDVFLLKLSCY---DRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGN  114 (343)
Q Consensus        38 ~~~~~~I~V~~~---Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~~l~~  114 (343)
                      ..+.+.|+|.+.   +.+|.++++...|..+|+||.  -|.+....   -.|.+...+.    + ..+.+++.+...+..
T Consensus       363 ~~~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd--~IssSe~s---Is~~v~~~~~----~-~~~~i~~~l~~l~~e  432 (521)
T PLN02551        363 KRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVD--VVATSEVS---ISLTLDPSKL----W-SRELIQQELDHLVEE  432 (521)
T ss_pred             CCCeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEE--EEeccCCE---EEEEEehhHh----h-hhhhHHHHHHHHHHH
Confidence            344567788664   689999999999999999998  44443222   2355543210    0 122233333332111


Q ss_pred             cccccccccccceeecccCCCCCCchHHHhhhcccCCCCCCCCCCCCCccEEEEEeCCCCCeEEEEEEEC--CcccHHHH
Q 019269          115 AMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQ--DHKGLLYD  192 (343)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~i~V~~~--DrpGLl~~  192 (343)
                                   +          .    + +                 ..|.+.    .+...|.|.|.  .++|++++
T Consensus       433 -------------l----------~----~-~-----------------~~V~v~----~~vAiISvVG~~~~~~gvaar  463 (521)
T PLN02551        433 -------------L----------E----K-I-----------------AVVNLL----QGRSIISLIGNVQRSSLILEK  463 (521)
T ss_pred             -------------h----------h----c-C-----------------CeEEEe----CCEEEEEEEccCCCCccHHHH
Confidence                         0          0    0 0                 112222    24566777754  67999999


Q ss_pred             HHHHHHhCCeeEEEE
Q 019269          193 IMRTLKDYNIQVSYG  207 (343)
Q Consensus       193 i~~~L~~~glnI~~A  207 (343)
                      +..+|++.|+||...
T Consensus       464 iF~aLa~~gInV~mI  478 (521)
T PLN02551        464 VFRVLRTNGVNVQMI  478 (521)
T ss_pred             HHHHHHHCCCCeEEE
Confidence            999999999999843

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=90.02  E-value=0.79  Score=47.07  Aligned_cols=51  Identities=16%  Similarity=0.265  Sum_probs=39.3

Q ss_pred             CeEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEe
Q 019269          175 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ  225 (343)
Q Consensus       175 ~~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~  225 (343)
                      ....+.+...|+||.+..|+.+|.++++||...++.....|+.++-++.++
T Consensus       451 ~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~D  501 (526)
T PRK13581        451 EGHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSVD  501 (526)
T ss_pred             CceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEECC
Confidence            445566677999999999999999999999988887434566676444443

>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional

Probab=89.91  E-value=4.9  Score=43.65  Aligned_cols=110  Identities=15%  Similarity=0.088  Sum_probs=66.7

Q ss_pred             CCeEEEEEEEC---CcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcC
Q 019269          174 PGHTLVQIVCQ---DHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQ  250 (343)
Q Consensus       174 ~~~t~i~V~~~---DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~~L~~  250 (343)
                      .+.+.|+|.+.   ++||+++++..+|+++|+||......   ..+ .--+|.+..+        ..++..+.|.+.+..
T Consensus       313 ~dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~mIsqs---sSe-~sIsf~V~~~--------d~~~av~~L~~~f~~  380 (819)
T PRK09436        313 NNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQS---SSE-YSISFCVPQS--------DAAKAKRALEEEFAL  380 (819)
T ss_pred             CCEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEEEEcC---CCC-ceEEEEEeHH--------HHHHHHHHHHHHHHH
Confidence            45678888765   67999999999999999999844322   111 2223555421        122223333333221


Q ss_pred             CcceeeecCCCCceeee---eeeEEEEeC---CCccHHHHHHHHHHhCCceEEEEE
Q 019269          251 PLRVTVVSRGPDTELLV---ANPVELSGK---GRPLVFHDITLALKMLDICIFSAE  300 (343)
Q Consensus       251 ~~~~~~~~~~~~~~v~~---~~~ieV~~~---DrpGLL~~I~~~l~~~gi~I~~Ak  300 (343)
                      +...    ... ..+.+   -..|.|.+.   ++||++.++..+|.+.|++|....
T Consensus       381 el~~----~~~-~~i~~~~~valIsvvG~gm~~~~gv~arif~aL~~~~InI~~Is  431 (819)
T PRK09436        381 ELKE----GLL-EPLEVEENLAIISVVGDGMRTHPGIAAKFFSALGRANINIVAIA  431 (819)
T ss_pred             Hhcc----CCc-ceEEEeCCEEEEEEEccCcccCcCHHHHHHHHHHHCCCCEEEEE
Confidence            1110    000 11111   125777776   799999999999999999998765

>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]

Probab=89.84  E-value=1.2  Score=38.39  Aligned_cols=66  Identities=8%  Similarity=0.105  Sum_probs=45.9

Q ss_pred             EEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCE-EEEEEEEecCCCCCCChHHHHHHHHHHHHHHc
Q 019269          177 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNC-EIDLFIMQADGKKIVDPSKQNGLSSRLWMELL  249 (343)
Q Consensus       177 t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~-~~d~F~v~~~g~~i~~~~~~~~l~~~L~~~L~  249 (343)
                      -.+.+.-.|.||.|+++++.|++.|+||.+-.+.- |+... ..-++.+.  |    ++...+++.+.|.+.++
T Consensus         5 rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~-tE~~~~SRiTivv~--g----~~~~~EQi~kQL~kLid   71 (163)
T COG0440           5 RILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGP-TETPGLSRITIVVS--G----DEQVLEQIIKQLNKLID   71 (163)
T ss_pred             EEEEEEEECCCCeeehhhHHHHhcCcccceEEEEe-cCCCCceEEEEEEc--C----CcchHHHHHHHHHhhcc
Confidence            46788889999999999999999999999877753 33322 22222222  2    23456788888766554

>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional

Probab=89.32  E-value=1.3  Score=43.60  Aligned_cols=53  Identities=11%  Similarity=0.033  Sum_probs=39.7

Q ss_pred             eeEEEEeCCCccHHHHHHHHHHhCCceEEEEEeeccccCceEeeeeEEEEEcCCCCC
Q 019269          269 NPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLS  325 (343)
Q Consensus       269 ~~ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~~~T~g~~~~dv~~F~v~~~~g~~  325 (343)
                      +.+-+..+|+||.|+++-..|+.+|||+.+.... |+.+..-+  |.|||. -.|..
T Consensus       298 tsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSR-P~~~~~~~--Y~Ffid-~eg~~  350 (386)
T PRK10622        298 TTLLMATGQQAGALVEALLVLRNHNLIMTKLESR-PIHGNPWE--EMFYLD-VQANL  350 (386)
T ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEee-ecCCCCce--EEEEEE-EeCCC
Confidence            3455666899999999999999999999998766 55554444  448884 45643

>PRK09181 aspartate kinase; Validated

Probab=89.30  E-value=26  Score=35.63  Aligned_cols=102  Identities=17%  Similarity=0.211  Sum_probs=64.1

Q ss_pred             CEEEEEEEEc---CCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEecCCCcccchhHHHHHHHHHHHHhcccc
Q 019269           40 DVFLLKLSCY---DRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAM  116 (343)
Q Consensus        40 ~~~~I~V~~~---Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~~l~~~~  116 (343)
                      +.+.|+|.+.   +.+|+.+++..+|..+|+||.  -+.+..+.   -.|.+...      ..+++++...|...+..  
T Consensus       328 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~--~i~ss~~s---is~~v~~~------~~~~~~~~~~L~~~~~~--  394 (475)
T PRK09181        328 KVFALEVFDQDMVGEDGYDLEILEILTRHKVSYI--SKATNANT---ITHYLWGS------LKTLKRVIAELEKRYPN--  394 (475)
T ss_pred             CEEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEE--EEEecCcE---EEEEEcCC------hHHHHHHHHHHHHhcCC--
Confidence            5667777543   688999999999999999998  44443222   23555431      11223333333321110  


Q ss_pred             cccccccccceeecccCCCCCCchHHHhhhcccCCCCCCCCCCCCCccEEEEEeCCCCCeEEEEEEECC--cccHHHHHH
Q 019269          117 ISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQD--HKGLLYDIM  194 (343)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~i~V~~~D--rpGLl~~i~  194 (343)
                                                                     ..+.    . .+...|.+.|..  +||+.+++.
T Consensus       395 -----------------------------------------------~~i~----~-~~~a~VsvVG~gm~~~gv~ak~f  422 (475)
T PRK09181        395 -----------------------------------------------AEVT----V-RKVAIVSAIGSNIAVPGVLAKAV  422 (475)
T ss_pred             -----------------------------------------------ceEE----E-CCceEEEEeCCCCCcccHHHHHH
Confidence                                                           0111    1 235677777654  899999999


Q ss_pred             HHHHhCCeeEEE
Q 019269          195 RTLKDYNIQVSY  206 (343)
Q Consensus       195 ~~L~~~glnI~~  206 (343)
                      .+|++.|+||..
T Consensus       423 ~aL~~~~Ini~~  434 (475)
T PRK09181        423 QALAEAGINVLA  434 (475)
T ss_pred             HHHHHCCCCeEE
Confidence            999999999983

>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D

Probab=89.24  E-value=0.47  Score=34.28  Aligned_cols=34  Identities=18%  Similarity=0.233  Sum_probs=28.4

Q ss_pred             CeEEEEEEEC----CcccHHHHHHHHHHhCCeeEEEEE
Q 019269          175 GHTLVQIVCQ----DHKGLLYDIMRTLKDYNIQVSYGR  208 (343)
Q Consensus       175 ~~t~i~V~~~----DrpGLl~~i~~~L~~~glnI~~A~  208 (343)
                      +...|+|.++    |.||+++++++.|++.|+||....
T Consensus         5 ~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is   42 (65)
T PF13840_consen    5 DWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS   42 (65)
T ss_dssp             EEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE
T ss_pred             CEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE
Confidence            4567888887    799999999999999999998443

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=89.23  E-value=0.71  Score=47.41  Aligned_cols=51  Identities=16%  Similarity=0.298  Sum_probs=39.8

Q ss_pred             CeEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEe
Q 019269          175 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ  225 (343)
Q Consensus       175 ~~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~  225 (343)
                      ....+-+.-.|+||.+..|+.+|.++++||...++.....|+.++-++.++
T Consensus       450 ~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~D  500 (525)
T TIGR01327       450 EGIMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSLD  500 (525)
T ss_pred             CccEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEcC
Confidence            344555666999999999999999999999988887555667777555544

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PRK06545 prephenate dehydrogenase; Validated

Probab=89.11  E-value=1.3  Score=43.06  Aligned_cols=37  Identities=16%  Similarity=0.229  Sum_probs=34.7

Q ss_pred             CCeEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEE
Q 019269          174 PGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFS  210 (343)
Q Consensus       174 ~~~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~  210 (343)
                      ..++.|.|.-+|+||-+++++..|.+.|+||.+.+|.
T Consensus       288 ~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~  324 (359)
T PRK06545        288 PSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRIL  324 (359)
T ss_pred             CcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceee
Confidence            4678999999999999999999999999999999996

>PRK09084 aspartate kinase III; Validated

Probab=89.09  E-value=11  Score=38.03  Aligned_cols=104  Identities=23%  Similarity=0.260  Sum_probs=60.5

Q ss_pred             CCeEEEEEEEC---CcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcC
Q 019269          174 PGHTLVQIVCQ---DHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQ  250 (343)
Q Consensus       174 ~~~t~i~V~~~---DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~~L~~  250 (343)
                      .+...|+|.+.   +.+|+++++..+|+++|+||...  .+ ..   .--+|.+..+..  . ......+.+++.+.+..
T Consensus       304 ~~i~lItv~~~~~~~~~g~~a~if~~l~~~~I~Vd~I--~s-se---~sIs~~i~~~~~--~-~~~~~~~~~~l~~el~~  374 (448)
T PRK09084        304 RNQTLLTLHSLNMLHARGFLAEVFGILARHKISVDLI--TT-SE---VSVSLTLDTTGS--T-STGDTLLTQALLTELSQ  374 (448)
T ss_pred             CCEEEEEEecCCCCccccHHHHHHHHHHHcCCeEEEE--ec-cC---cEEEEEEechhh--h-hhhhHHHHHHHHHHHhc
Confidence            35567888765   68899999999999999999944  32 11   122355542211  0 10111232333333432


Q ss_pred             CcceeeecCCCCceeeeeeeEEEEeC---CCccHHHHHHHHHHhCCc
Q 019269          251 PLRVTVVSRGPDTELLVANPVELSGK---GRPLVFHDITLALKMLDI  294 (343)
Q Consensus       251 ~~~~~~~~~~~~~~v~~~~~ieV~~~---DrpGLL~~I~~~l~~~gi  294 (343)
                      ...+.+ ...    +   ..|.|.|.   ++||+..++..+|.+.++
T Consensus       375 ~~~i~~-~~~----v---a~IsvvG~gm~~~~gv~arif~aL~~~nI  413 (448)
T PRK09084        375 LCRVEV-EEG----L---ALVALIGNNLSKACGVAKRVFGVLEPFNI  413 (448)
T ss_pred             CCeEEE-ECC----e---EEEEEECCCcccCcChHHHHHHHHHhCCe
Confidence            111111 011    1   26778876   799999999999987543

>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]

Probab=88.88  E-value=2.3  Score=36.59  Aligned_cols=66  Identities=20%  Similarity=0.270  Sum_probs=48.1

Q ss_pred             EEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCC-CEEEEEEEEecCCCcccchhHHHHHHHHHHHHh
Q 019269           41 VFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPD-GKVMDLFFVTDTRELLHTRKRKEDTYEHLKTIL  112 (343)
Q Consensus        41 ~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~-g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~~l  112 (343)
                      .-.+.+.-.|.||.++++++.|+..|+||.+--+--+.+ +..--++.+..      ++..++++.+.|....
T Consensus         4 ~rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~g------~~~~~EQi~kQL~kLi   70 (163)
T COG0440           4 RRILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVSG------DEQVLEQIIKQLNKLI   70 (163)
T ss_pred             eEEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEcC------CcchHHHHHHHHHhhc
Confidence            346888899999999999999999999999877765543 33333333332      3455778888887754

>PRK09181 aspartate kinase; Validated

Probab=88.76  E-value=11  Score=38.39  Aligned_cols=106  Identities=14%  Similarity=0.102  Sum_probs=67.0

Q ss_pred             CeEEEEEEEC---CcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCC
Q 019269          175 GHTLVQIVCQ---DHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQP  251 (343)
Q Consensus       175 ~~t~i~V~~~---DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~~L~~~  251 (343)
                      +.+.|+|.+.   +.+|+.+++..+|+++|+||.  .+.+  . . ..-.|.+..+      ....+++.+.|.+.+...
T Consensus       328 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~--~i~s--s-~-~sis~~v~~~------~~~~~~~~~~L~~~~~~~  395 (475)
T PRK09181        328 KVFALEVFDQDMVGEDGYDLEILEILTRHKVSYI--SKAT--N-A-NTITHYLWGS------LKTLKRVIAELEKRYPNA  395 (475)
T ss_pred             CEEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEE--EEEe--c-C-cEEEEEEcCC------hHHHHHHHHHHHHhcCCc
Confidence            5667777654   689999999999999999998  3432  1 1 1223455421      113344545554433211


Q ss_pred             cceeeecCCCCceeeeeeeEEEEeCC--CccHHHHHHHHHHhCCceEEEEEee
Q 019269          252 LRVTVVSRGPDTELLVANPVELSGKG--RPLVFHDITLALKMLDICIFSAEIG  302 (343)
Q Consensus       252 ~~~~~~~~~~~~~v~~~~~ieV~~~D--rpGLL~~I~~~l~~~gi~I~~AkI~  302 (343)
                       .+.  ..+    +   ..|.|.|..  +||+..++..+|.+.||||.....+
T Consensus       396 -~i~--~~~----~---a~VsvVG~gm~~~gv~ak~f~aL~~~~Ini~~i~qg  438 (475)
T PRK09181        396 -EVT--VRK----V---AIVSAIGSNIAVPGVLAKAVQALAEAGINVLALHQS  438 (475)
T ss_pred             -eEE--ECC----c---eEEEEeCCCCCcccHHHHHHHHHHHCCCCeEEEEec
Confidence             111  111    1   256777654  8999999999999999999775544

>TIGR00657 asp_kinases aspartate kinase

Probab=88.54  E-value=16  Score=36.54  Aligned_cols=105  Identities=21%  Similarity=0.158  Sum_probs=62.0

Q ss_pred             CeEEEEEEECCc--ccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCCc
Q 019269          175 GHTLVQIVCQDH--KGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPL  252 (343)
Q Consensus       175 ~~t~i~V~~~Dr--pGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~~L~~~~  252 (343)
                      +...|+|.+.+-  +|+++++.++|+++|+||....-.  +. +.- -.|.+..+        ..++..+.|..... ..
T Consensus       301 ~v~~Isv~g~~~~~~g~la~if~~L~~~~I~I~~i~q~--~s-e~s-Is~~I~~~--------~~~~a~~~L~~~~~-~~  367 (441)
T TIGR00657       301 NQARVTVSGLGMKGPGFLARVFGALAEAGINVDLITQS--SS-ETS-ISFTVDKE--------DADQAKTLLKSELN-LS  367 (441)
T ss_pred             CEEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEec--CC-Cce-EEEEEEHH--------HHHHHHHHHHHHHH-hc
Confidence            455677766443  799999999999999999854321  11 111 12444421        11222222222111 10


Q ss_pred             ceeeecCCCCceeee---eeeEEEEeC---CCccHHHHHHHHHHhCCceEEEEE
Q 019269          253 RVTVVSRGPDTELLV---ANPVELSGK---GRPLVFHDITLALKMLDICIFSAE  300 (343)
Q Consensus       253 ~~~~~~~~~~~~v~~---~~~ieV~~~---DrpGLL~~I~~~l~~~gi~I~~Ak  300 (343)
                      ..        ..+.+   -..+.|.+.   ++||++++|..+|++.|+||....
T Consensus       368 ~~--------~~I~~~~~~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~  413 (441)
T TIGR00657       368 AL--------SSVEVEKGLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMIS  413 (441)
T ss_pred             Cc--------ceEEEcCCeEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEE
Confidence            11        11111   125677654   889999999999999999998775

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.

>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional

Probab=88.35  E-value=2.9  Score=41.28  Aligned_cols=53  Identities=13%  Similarity=0.287  Sum_probs=40.6

Q ss_pred             CeEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCE-EEEEEEEecCCC
Q 019269          175 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNC-EIDLFIMQADGK  229 (343)
Q Consensus       175 ~~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~-~~d~F~v~~~g~  229 (343)
                      ..|.+-+..+|+||.|+++-+.|+.+|+|+.  +|.++...+. ..=.|+++-+|.
T Consensus       296 ~ktsl~~~~~~~pGaL~~~L~~Fa~~giNLt--kIeSRP~~~~~~~Y~Ffid~eg~  349 (386)
T PRK10622        296 AKTTLLMATGQQAGALVEALLVLRNHNLIMT--KLESRPIHGNPWEEMFYLDVQAN  349 (386)
T ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCCCee--EEEeeecCCCCceEEEEEEEeCC
Confidence            3677777779999999999999999999999  6766544333 444588886554

>PRK06349 homoserine dehydrogenase; Provisional

Probab=88.25  E-value=2.2  Score=42.60  Aligned_cols=50  Identities=20%  Similarity=0.125  Sum_probs=39.4

Q ss_pred             eeeEEEEeCCCccHHHHHHHHHHhCCceEEEEEeeccccCceEeeeeEEEEEcC
Q 019269          268 ANPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEG  321 (343)
Q Consensus       268 ~~~ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~~~T~g~~~~dv~~F~v~~~  321 (343)
                      .+.+.+...|+||.|.+|+..|.+++++|.+..-.  ...+...++  +++++.
T Consensus       348 ~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~--~~~~~~~~i--vivT~~  397 (426)
T PRK06349        348 KYYLRLLVADKPGVLAKIAAIFAENGISIESILQK--GAGGEGAEI--VIVTHE  397 (426)
T ss_pred             eEEEEEEecCCcchHHHHHHHHhhcCccEEEEEec--cCCCCceeE--EEEEEe
Confidence            45789999999999999999999999999988665  333344455  677754

>PRK06382 threonine dehydratase; Provisional

Probab=88.06  E-value=3.5  Score=40.84  Aligned_cols=67  Identities=10%  Similarity=0.112  Sum_probs=44.5

Q ss_pred             CCeEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEE---eecCCEEEEEEEEecCCCCCCChHHHHHHHHHHH
Q 019269          174 PGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSR---RQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLW  245 (343)
Q Consensus       174 ~~~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t---~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~  245 (343)
                      ...+.+.|.-+|+||-|.+++.+|.++|+||.+.....   ....+...-+|.+...     +++..+.|.+.|+
T Consensus       328 ~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~-----~~~~~~~v~~~L~  397 (406)
T PRK06382        328 GQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVR-----GQDHLDRILNALR  397 (406)
T ss_pred             CCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeC-----CHHHHHHHHHHHH
Confidence            45678999999999999999999999999998655421   0112344444555421     1334446666654

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=87.93  E-value=0.97  Score=46.42  Aligned_cols=61  Identities=23%  Similarity=0.257  Sum_probs=45.8

Q ss_pred             eEEEEeCCCccHHHHHHHHHHhCCceEEEEEeeccccCceEeeeeEEEEEcCCCCCCCchHHHHHHHH
Q 019269          270 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWK  337 (343)
Q Consensus       270 ~ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~~~T~g~~~~dv~~F~v~~~~g~~l~~~~~~~~l~~  337 (343)
                      .+-+.-.|+||.+..|+..|.+++|||...++.+...|+.+     +++...+ ++++++ ..++|++
T Consensus       453 ~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~a-----l~~i~~D-~~v~~~-~l~~i~~  513 (525)
T TIGR01327       453 MLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEA-----LMLLSLD-QPVPDE-VLEEIKA  513 (525)
T ss_pred             EEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeE-----EEEEEcC-CCCCHH-HHHHHhc
Confidence            34455689999999999999999999999999976667665     4444443 355655 5677764

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=87.81  E-value=1.3  Score=45.50  Aligned_cols=61  Identities=21%  Similarity=0.292  Sum_probs=44.5

Q ss_pred             eEEEEeCCCccHHHHHHHHHHhCCceEEEEEeeccccCceEeeeeEEEEEcCCCCCCCchHHHHHHHH
Q 019269          270 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWK  337 (343)
Q Consensus       270 ~ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~~~T~g~~~~dv~~F~v~~~~g~~l~~~~~~~~l~~  337 (343)
                      .+-+.-.|+||.+..|+..|.+++|||...++.+...|+.+     .++..-+ ++++++ ..++|++
T Consensus       454 ~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~a-----l~~i~~D-~~v~~~-~l~~i~~  514 (526)
T PRK13581        454 MLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEA-----LMVLSVD-DPVPEE-VLEELRA  514 (526)
T ss_pred             EEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeE-----EEEEECC-CCCCHH-HHHHHhc
Confidence            34555689999999999999999999999999854455555     4444443 455555 5677764

>PRK08198 threonine dehydratase; Provisional

Probab=87.23  E-value=6  Score=39.09  Aligned_cols=56  Identities=20%  Similarity=0.266  Sum_probs=41.7

Q ss_pred             hhcCCCCCCCCcccC---C--CCCCCEEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEE
Q 019269           20 EEETDGCMPFLFFSF---S--PKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKIS   75 (343)
Q Consensus        20 ~~~~~~~~~~~~~~~---~--~~~~~~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~   75 (343)
                      .-+|-+++.+.....   +  ...+....+.|.-+|+||.|++++..+..+|.||.+-...
T Consensus       301 ~vl~ggn~~~~~l~~ii~~gl~~~gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~  361 (404)
T PRK08198        301 AVLSGGNIDVLLLSRVIERGLVAAGRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHD  361 (404)
T ss_pred             EEECCCCCCHHHHHHHHHhhhhhcCCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEE
Confidence            345655655443322   1  3456667999999999999999999999999999977654

>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=87.23  E-value=6  Score=29.95  Aligned_cols=62  Identities=6%  Similarity=0.014  Sum_probs=36.4

Q ss_pred             EEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHHHH
Q 019269          178 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWM  246 (343)
Q Consensus       178 ~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~  246 (343)
                      ++.|.-+|+||=|.+++.+|+  +.||.+..-.. ...+.+.-.+.+...+.    ++..+.+.+.|.+
T Consensus         3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~-~~~~~~~v~i~ie~~~~----~~~~~~i~~~L~~   64 (85)
T cd04906           3 LLAVTIPERPGSFKKFCELIG--PRNITEFNYRY-ADEKDAHIFVGVSVANG----AEELAELLEDLKS   64 (85)
T ss_pred             EEEEecCCCCcHHHHHHHHhC--CCceeEEEEEc-cCCCeeEEEEEEEeCCc----HHHHHHHHHHHHH
Confidence            577888999999999999999  55665333321 11123333344442210    3455666666643

This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form

Probab=86.33  E-value=6.5  Score=38.49  Aligned_cols=87  Identities=16%  Similarity=0.205  Sum_probs=53.5

Q ss_pred             hhhcCCCCCCCCccc---C--CCCCCCEEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEe---c-CCCEEEEEEEEe
Q 019269           19 IEEETDGCMPFLFFS---F--SPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKIST---T-PDGKVMDLFFVT   89 (343)
Q Consensus        19 ~~~~~~~~~~~~~~~---~--~~~~~~~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T---~-~~g~~~d~f~V~   89 (343)
                      +.-+|-+++++..+.   +  -...+....+.|.-+|+||.|++++..++.+|.||.+-.-..   . +.+.+.-.+.+.
T Consensus       278 v~i~sGGn~d~d~l~~vi~~gl~~~gr~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~ve  357 (380)
T TIGR01127       278 AVVLSGGNIDLNLLNKIIEKGLVKSGRKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLE  357 (380)
T ss_pred             EEEeCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEE
Confidence            344566665533221   1  233445558999999999999999999999999999664331   1 235554445554


Q ss_pred             cCCCcccchhHHHHHHHHHHH
Q 019269           90 DTRELLHTRKRKEDTYEHLKT  110 (343)
Q Consensus        90 ~~~g~~~~~~~~~~l~~~L~~  110 (343)
                      ..     +++..+.|.+.|++
T Consensus       358 t~-----~~~~~~~i~~~L~~  373 (380)
T TIGR01127       358 TR-----GKEHLDEILKILRD  373 (380)
T ss_pred             eC-----CHHHHHHHHHHHHH
Confidence            32     23444555555544

A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.

>PRK08818 prephenate dehydrogenase; Provisional

Probab=86.31  E-value=1.5  Score=42.95  Aligned_cols=48  Identities=6%  Similarity=-0.035  Sum_probs=35.5

Q ss_pred             eeEEEEeC-CCccHHHHHHHHHHhCCceEEEEEeeccccCceEeeeeEEEEEcC
Q 019269          269 NPVELSGK-GRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEG  321 (343)
Q Consensus       269 ~~ieV~~~-DrpGLL~~I~~~l~~~gi~I~~AkI~~~T~g~~~~dv~~F~v~~~  321 (343)
                      +.+-+.-+ |+||.|++|...|+++||||.+..+.   ....  ..|.|||.=.
T Consensus       296 ~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies~---~~r~--~~y~f~i~~~  344 (370)
T PRK08818        296 LTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHSS---RTPA--GELHFRIGFE  344 (370)
T ss_pred             eEEEEECCCCCCChHHHHHHHHHHcCcccceEEEe---cccC--ceEEEEEEEe
Confidence            45555665 99999999999999999999999985   1111  2244887533

>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form

Probab=86.03  E-value=6.1  Score=38.64  Aligned_cols=66  Identities=9%  Similarity=0.169  Sum_probs=42.9

Q ss_pred             CeEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEE---EeecCCEEEEEEEEecCCCCCCChHHHHHHHHHHH
Q 019269          175 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFS---RRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLW  245 (343)
Q Consensus       175 ~~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~---t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~  245 (343)
                      ....+.|.-+||||.|+++++.+++.|.||.+..-.   .....+.+.-.+.+...     +++..+.|.+.|.
T Consensus       304 r~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~-----~~~~~~~i~~~L~  372 (380)
T TIGR01127       304 RKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETR-----GKEHLDEILKILR  372 (380)
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeC-----CHHHHHHHHHHHH
Confidence            345889999999999999999999999999865432   10112344433444421     2335556666654

A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.

>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional

Probab=86.01  E-value=57  Score=35.57  Aligned_cols=113  Identities=13%  Similarity=0.168  Sum_probs=69.3

Q ss_pred             CCCEEEEEEEEc---CCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEecCCCcccchhHHHHHHHHHHHHhcc
Q 019269           38 PSDVFLLKLSCY---DRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGN  114 (343)
Q Consensus        38 ~~~~~~I~V~~~---Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~~l~~  114 (343)
                      ..+...|+|.+.   +++|+++++..+|..+|+||.-....+  +..- -.|.|..        .+.++..+.|.+.+..
T Consensus       312 ~~dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~mIsqss--Se~s-Isf~V~~--------~d~~~av~~L~~~f~~  380 (819)
T PRK09436        312 LNNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQSS--SEYS-ISFCVPQ--------SDAAKAKRALEEEFAL  380 (819)
T ss_pred             eCCEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEEEEcCC--CCce-EEEEEeH--------HHHHHHHHHHHHHHHH
Confidence            355667888864   678999999999999999997333222  2222 1344432        2233333334433311


Q ss_pred             cccccccccccceeecccCCCCCCchHHHhhhcccCCCCCCCCCCCCCccEEEEEeCCCCCeEEEEEEEC---CcccHHH
Q 019269          115 AMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQ---DHKGLLY  191 (343)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~i~V~~~---DrpGLl~  191 (343)
                      +.                      ..+                    ....|.+.    .+...|.|.+.   ++||+.+
T Consensus       381 el----------------------~~~--------------------~~~~i~~~----~~valIsvvG~gm~~~~gv~a  414 (819)
T PRK09436        381 EL----------------------KEG--------------------LLEPLEVE----ENLAIISVVGDGMRTHPGIAA  414 (819)
T ss_pred             Hh----------------------ccC--------------------CcceEEEe----CCEEEEEEEccCcccCcCHHH
Confidence            10                      000                    00122222    34567888875   7899999


Q ss_pred             HHHHHHHhCCeeEEEE
Q 019269          192 DIMRTLKDYNIQVSYG  207 (343)
Q Consensus       192 ~i~~~L~~~glnI~~A  207 (343)
                      ++..+|.+.|+||...
T Consensus       415 rif~aL~~~~InI~~I  430 (819)
T PRK09436        415 KFFSALGRANINIVAI  430 (819)
T ss_pred             HHHHHHHHCCCCEEEE
Confidence            9999999999999843

>PRK09034 aspartate kinase; Reviewed

Probab=84.80  E-value=47  Score=33.50  Aligned_cols=33  Identities=18%  Similarity=0.325  Sum_probs=27.4

Q ss_pred             CeEEEEEEE---CCcccHHHHHHHHHHhCCeeEEEE
Q 019269          175 GHTLVQIVC---QDHKGLLYDIMRTLKDYNIQVSYG  207 (343)
Q Consensus       175 ~~t~i~V~~---~DrpGLl~~i~~~L~~~glnI~~A  207 (343)
                      +...|.+.+   .++||+++++..+|++.|+||...
T Consensus       384 ~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mI  419 (454)
T PRK09034        384 DLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMI  419 (454)
T ss_pred             CEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEE
Confidence            356777765   478999999999999999999844

>PRK08818 prephenate dehydrogenase; Provisional

Probab=84.54  E-value=2.2  Score=41.80  Aligned_cols=48  Identities=15%  Similarity=0.154  Sum_probs=35.9

Q ss_pred             CeEEEEEEEC-CcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEe
Q 019269          175 GHTLVQIVCQ-DHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ  225 (343)
Q Consensus       175 ~~t~i~V~~~-DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~  225 (343)
                      ..+.+.+.-+ |+||-|+++..+|+.+|+||.+-.+.. +..+...  |++.
T Consensus       294 ~~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies~~-~r~~~y~--f~i~  342 (370)
T PRK08818        294 EPLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHSSR-TPAGELH--FRIG  342 (370)
T ss_pred             cceEEEEECCCCCCChHHHHHHHHHHcCcccceEEEec-ccCceEE--EEEE
Confidence            3567777776 999999999999999999999777732 2212222  7776

>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]

Probab=84.43  E-value=1.6  Score=40.09  Aligned_cols=38  Identities=16%  Similarity=0.304  Sum_probs=32.7

Q ss_pred             CEEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEec
Q 019269           40 DVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTT   77 (343)
Q Consensus        40 ~~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~   77 (343)
                      ..-.|.+..-|.||.+++|+|+|+..|+||.+--+--+
T Consensus        76 krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~t  113 (309)
T KOG2663|consen   76 KRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLT  113 (309)
T ss_pred             cceeEEEEecCCchHHHHHHHHHHhccCCchheeeech
Confidence            34578899999999999999999999999998776543

>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase

Probab=83.98  E-value=8.7  Score=44.31  Aligned_cols=99  Identities=13%  Similarity=0.029  Sum_probs=71.5

Q ss_pred             ccchhhcCCCCCC-CCcccCCCCCCCEEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCC--C--EEEEEEEEec
Q 019269           16 VGFIEEETDGCMP-FLFFSFSPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPD--G--KVMDLFFVTD   90 (343)
Q Consensus        16 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~--g--~~~d~f~V~~   90 (343)
                      ..+||.+++.+-. .....+....++.+.+.++.+.++..|+++.-+|..+|+.|++.+-+....  |  ..+.-|.+..
T Consensus       463 i~~le~l~~~~~~~~~l~~~~~~~~~~~~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~  542 (1528)
T PF05088_consen  463 IERLESLSGEGPLAVDLYRPAGAGPGRLRLKIYHPGEPLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQY  542 (1528)
T ss_pred             HHHHHhhcCCCCceEEEeccCCCCCCeEEEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEec
Confidence            3577888775444 334444556668899999999999999999999999999999998776542  2  4556688888


Q ss_pred             CCCcccc-hhHHHHHHHHHHHHhcc
Q 019269           91 TRELLHT-RKRKEDTYEHLKTILGN  114 (343)
Q Consensus        91 ~~g~~~~-~~~~~~l~~~L~~~l~~  114 (343)
                      +.+...+ ...++.+++.+..+..+
T Consensus       543 ~~~~~~~~~~~~~~~~~a~~~v~~g  567 (1528)
T PF05088_consen  543 PDGDALDLDDIRERFEEAFEAVWNG  567 (1528)
T ss_pred             CCCccccHHHHHHHHHHHHHHHhcC
Confidence            7665332 34556677777666544

>PRK08198 threonine dehydratase; Provisional

Probab=83.95  E-value=10  Score=37.49  Aligned_cols=37  Identities=11%  Similarity=0.113  Sum_probs=32.5

Q ss_pred             CCeEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEE
Q 019269          174 PGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFS  210 (343)
Q Consensus       174 ~~~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~  210 (343)
                      .....+.|.-+|+||-|.++...+++.|.||.+....
T Consensus       325 gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~  361 (404)
T PRK08198        325 GRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHD  361 (404)
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEE
Confidence            4556899999999999999999999999999976653

>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein

Probab=83.71  E-value=14  Score=27.25  Aligned_cols=56  Identities=14%  Similarity=0.169  Sum_probs=36.9

Q ss_pred             cCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEecCCCcccchhHHHHHHHHHHH
Q 019269           49 YDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT  110 (343)
Q Consensus        49 ~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~  110 (343)
                      ++.+|+++++.++|+.+|+||.  -|.+..+.   -.|.|...... .+.+.++.|.+.|++
T Consensus        12 ~~~~g~~~~IF~~La~~~I~vD--mI~~s~~~---isftv~~~~~~-~~~~~~~~l~~el~~   67 (75)
T cd04935          12 WQQVGFLADVFAPFKKHGVSVD--LVSTSETN---VTVSLDPDPNG-LDPDVLDALLDDLNQ   67 (75)
T ss_pred             CCccCHHHHHHHHHHHcCCcEE--EEEeCCCE---EEEEEeCcccc-cchHHHHHHHHHHHh
Confidence            6789999999999999999998  55553222   23556543211 223456677777666

This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins

Probab=83.53  E-value=5.7  Score=26.85  Aligned_cols=46  Identities=17%  Similarity=0.280  Sum_probs=30.6

Q ss_pred             EEEE-EcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEe
Q 019269           44 LKLS-CYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVT   89 (343)
Q Consensus        44 I~V~-~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~   89 (343)
                      |++. .+|.+|.++++...|..+|++|.........+|..--.|.+.
T Consensus         3 v~v~~~~~~~~~~~~i~~~L~~~~i~i~~i~~~~~~~~~~~is~~v~   49 (61)
T cd04891           3 VTIKGVPDKPGVAAKIFSALAEAGINVDMIVQSVSRGGTTDISFTVP   49 (61)
T ss_pred             EEEecCCCCCcHHHHHHHHHHHcCCcEEEEEEcCCCCCcEEEEEEEe
Confidence            4444 388899999999999999999975444322233222335553

This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK09084 aspartate kinase III; Validated

Probab=83.49  E-value=39  Score=33.98  Aligned_cols=32  Identities=22%  Similarity=0.470  Sum_probs=27.0

Q ss_pred             CCEEEEEEEEc---CCCcHHHHHHHHHHhCCCeEE
Q 019269           39 SDVFLLKLSCY---DRKGLLYDVTAVLCELELTIE   70 (343)
Q Consensus        39 ~~~~~I~V~~~---Dr~GLl~~i~~~L~~~glnI~   70 (343)
                      .+...|+|.+.   +.+|.++++..+|..+|+||.
T Consensus       304 ~~i~lItv~~~~~~~~~g~~a~if~~l~~~~I~Vd  338 (448)
T PRK09084        304 RNQTLLTLHSLNMLHARGFLAEVFGILARHKISVD  338 (448)
T ss_pred             CCEEEEEEecCCCCccccHHHHHHHHHHHcCCeEE
Confidence            45567778654   688999999999999999998

>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]

Probab=82.33  E-value=4.3  Score=34.80  Aligned_cols=31  Identities=13%  Similarity=0.166  Sum_probs=25.5

Q ss_pred             EEEEEE--CCcccHHHHHHHHHHhCCeeEEEEE
Q 019269          178 LVQIVC--QDHKGLLYDIMRTLKDYNIQVSYGR  208 (343)
Q Consensus       178 ~i~V~~--~DrpGLl~~i~~~L~~~glnI~~A~  208 (343)
                      +|+++.  .+.||+++.+++.++++||+|..+-
T Consensus        95 Viei~~~~~~~pgi~A~V~~~iak~gi~Irqi~  127 (167)
T COG2150          95 VIEIYPEDARYPGILAGVASLIAKRGISIRQII  127 (167)
T ss_pred             EEEEEeccCCCccHHHHHHHHHHHcCceEEEEe
Confidence            555554  6679999999999999999999543

>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins

Probab=82.30  E-value=14  Score=26.09  Aligned_cols=30  Identities=17%  Similarity=0.356  Sum_probs=24.7

Q ss_pred             EEEEEE-cCCCcHHHHHHHHHHhCCCeEEEE
Q 019269           43 LLKLSC-YDRKGLLYDVTAVLCELELTIEKV   72 (343)
Q Consensus        43 ~I~V~~-~Dr~GLl~~i~~~L~~~glnI~~A   72 (343)
                      .|+|.+ +|.+|.++++...|...|+||..-
T Consensus         3 ~v~v~~~~~~~g~~~~i~~~L~~~~I~i~~i   33 (75)
T cd04913           3 KITLRGVPDKPGVAAKIFGALAEANINVDMI   33 (75)
T ss_pred             EEEECCCCCCCcHHHHHHHHHHHcCCeEEEE
Confidence            344443 789999999999999999999843

This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee

>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII

Probab=82.08  E-value=13  Score=27.50  Aligned_cols=24  Identities=25%  Similarity=0.368  Sum_probs=22.1

Q ss_pred             ECCcccHHHHHHHHHHhCCeeEEE
Q 019269          183 CQDHKGLLYDIMRTLKDYNIQVSY  206 (343)
Q Consensus       183 ~~DrpGLl~~i~~~L~~~glnI~~  206 (343)
                      .+++||++++|..+|+++|+||-.
T Consensus        11 ~~~~~g~~~~IF~~La~~~I~VDm   34 (75)
T cd04932          11 MLHAQGFLAKVFGILAKHNISVDL   34 (75)
T ss_pred             CCCCcCHHHHHHHHHHHcCCcEEE
Confidence            478899999999999999999993

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII

Probab=81.87  E-value=12  Score=27.79  Aligned_cols=32  Identities=13%  Similarity=-0.081  Sum_probs=26.6

Q ss_pred             eEEEE---eCCCccHHHHHHHHHHhCCceEEEEEe
Q 019269          270 PVELS---GKGRPLVFHDITLALKMLDICIFSAEI  301 (343)
Q Consensus       270 ~ieV~---~~DrpGLL~~I~~~l~~~gi~I~~AkI  301 (343)
                      .|+|.   ..++||++++|-.+|+++||+|.....
T Consensus         3 ~ItI~~~~~~~~~g~~~~IF~~La~~~I~VDmI~~   37 (75)
T cd04932           3 LVTLKSPNMLHAQGFLAKVFGILAKHNISVDLITT   37 (75)
T ss_pred             EEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEEee
Confidence            45553   468999999999999999999998753

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]

Probab=81.82  E-value=2.6  Score=36.15  Aligned_cols=40  Identities=15%  Similarity=0.153  Sum_probs=31.0

Q ss_pred             CCCCCCEEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEe
Q 019269           35 SPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKIST   76 (343)
Q Consensus        35 ~~~~~~~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T   76 (343)
                      +...-+...|...-.+.||+++.+++.++++||+|.  +++.
T Consensus        89 ~~lG~gViei~~~~~~~pgi~A~V~~~iak~gi~Ir--qi~~  128 (167)
T COG2150          89 PLLGLGVIEIYPEDARYPGILAGVASLIAKRGISIR--QIIS  128 (167)
T ss_pred             HhcCCeEEEEEeccCCCccHHHHHHHHHHHcCceEE--EEec
Confidence            344445556666668899999999999999999999  4554

>TIGR00657 asp_kinases aspartate kinase

Probab=81.77  E-value=59  Score=32.47  Aligned_cols=33  Identities=21%  Similarity=0.313  Sum_probs=27.5

Q ss_pred             CeEEEEEEE---CCcccHHHHHHHHHHhCCeeEEEE
Q 019269          175 GHTLVQIVC---QDHKGLLYDIMRTLKDYNIQVSYG  207 (343)
Q Consensus       175 ~~t~i~V~~---~DrpGLl~~i~~~L~~~glnI~~A  207 (343)
                      +...|++.+   .++||+++++...|++.|+||...
T Consensus       377 ~~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i  412 (441)
T TIGR00657       377 GLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMI  412 (441)
T ss_pred             CeEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEE
Confidence            456777765   478999999999999999999844

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.

>COG4492 PheB ACT domain-containing protein [General function prediction only]

Probab=81.01  E-value=11  Score=31.43  Aligned_cols=51  Identities=12%  Similarity=0.082  Sum_probs=40.0

Q ss_pred             CCeEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEe
Q 019269          174 PGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ  225 (343)
Q Consensus       174 ~~~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~  225 (343)
                      ..-+.+.+.-.||.|.|+++-.++++.++||....-.. ...|++--+..++
T Consensus        70 ~ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~i-pl~g~Anvtlsi~  120 (150)
T COG4492          70 ERIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTI-PLQGRANVTLSID  120 (150)
T ss_pred             ceEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEeccc-ccCceeeEEEEEE
Confidence            34578889999999999999999999999999555433 4456776566665

>PRK06545 prephenate dehydrogenase; Validated

Probab=80.96  E-value=2.6  Score=41.05  Aligned_cols=41  Identities=27%  Similarity=0.374  Sum_probs=36.4

Q ss_pred             CCCEEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecC
Q 019269           38 PSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTP   78 (343)
Q Consensus        38 ~~~~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~   78 (343)
                      -...+.|.|.-+|+||-+++++..|...|+||.+-+|....
T Consensus       287 ~~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~  327 (359)
T PRK06545        287 IPSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAR  327 (359)
T ss_pred             CCcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeecc
Confidence            35678999999999999999999999999999999986543

>PLN02317 arogenate dehydratase

Probab=80.62  E-value=11  Score=37.10  Aligned_cols=37  Identities=14%  Similarity=0.349  Sum_probs=31.5

Q ss_pred             eEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeec
Q 019269          176 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQR  214 (343)
Q Consensus       176 ~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~  214 (343)
                      .|.|.+.-+|+||-|+++-.+|+.+|+|+.  +|.++..
T Consensus       283 KTSivfsl~~~pG~L~k~L~~Fa~~~INLt--kIESRP~  319 (382)
T PLN02317        283 KTSIVFSLEEGPGVLFKALAVFALRDINLT--KIESRPQ  319 (382)
T ss_pred             cEEEEEEcCCCCchHHHHHHHHHHCCCCEE--EEEeeec
Confidence            477777779999999999999999999999  6666543

>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII

Probab=80.60  E-value=15  Score=26.87  Aligned_cols=29  Identities=17%  Similarity=0.332  Sum_probs=23.7

Q ss_pred             EEEEE---ECCcccHHHHHHHHHHhCCeeEEE
Q 019269          178 LVQIV---CQDHKGLLYDIMRTLKDYNIQVSY  206 (343)
Q Consensus       178 ~i~V~---~~DrpGLl~~i~~~L~~~glnI~~  206 (343)
                      .|++.   ..+.+|+++++..+|++.|+++..
T Consensus         3 ~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~   34 (75)
T cd04912           3 LLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDL   34 (75)
T ss_pred             EEEEEcCCCCCCccHHHHHHHHHHHcCCeEEE
Confidence            44553   267799999999999999999973

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD

>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase)

Probab=80.25  E-value=13  Score=25.88  Aligned_cols=51  Identities=16%  Similarity=0.108  Sum_probs=35.6

Q ss_pred             CCCccHHHHHHHHHHhCCceEEEEEeeccccCceEeeeeEEEEEcCCCCCCCchHHHHHHHHHH
Q 019269          276 KGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLL  339 (343)
Q Consensus       276 ~DrpGLL~~I~~~l~~~gi~I~~AkI~~~T~g~~~~dv~~F~v~~~~g~~l~~~~~~~~l~~~L  339 (343)
                      .++||+.++|-++|.++|+++.....+     +   +...|++...+.   + + ..++|.++|
T Consensus        11 ~~~~~~~~~if~~l~~~~i~v~~i~t~-----~---~~is~~v~~~~~---~-~-~~~~l~~~l   61 (62)
T cd04890          11 NGEVGFLRKIFEILEKHGISVDLIPTS-----E---NSVTLYLDDSLL---P-K-KLKRLLAEL   61 (62)
T ss_pred             CcccCHHHHHHHHHHHcCCeEEEEecC-----C---CEEEEEEehhhh---h-H-HHHHHHHhh
Confidence            378999999999999999999998433     2   333588865332   1 2 346666665

This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	343
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	1e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.2 bits (124), Expect = 2e-07
 Identities = 63/409 (15%), Positives = 113/409 (27%), Gaps = 132/409 (32%)

Query: 2   VLHSVLGDWG---LTNKVGFIEEETDGCMPFLFFSFSPKPSDVFLLKLSCYDRKG----- 53
           ++  VLG  G   +   V  +  +    M F           +F L L   +        
Sbjct: 154 LIDGVLG-SGKTWVALDV-CLSYKVQCKMDF----------KIFWLNLKNCNSPETVLEM 201

Query: 54  ---LLYDVTAVLCE-------LELTIEKVK------ISTTP------------DGKVMDL 85
              LLY +             ++L I  ++      + + P            + K  + 
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA 261

Query: 86  F------FVTDTRELLHTRKRKEDTYEHLKTILGNAMISCDVEMVGTEITACSQASSFLP 139
           F       +T TR    T      T  H+              M  T      +  S L 
Sbjct: 262 FNLSCKILLT-TRFKQVTDFLSAATTTHISLD--------HHSMTLTP----DEVKSLL- 307

Query: 140 SAIIDMLHLDMPVELPSGS-LTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLK 198
              +D    D+P E+ + +    S ++ +I + L+       + C     ++   +  L+
Sbjct: 308 LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE 367

Query: 199 DYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLRVTVVS 258
               +  +              L +       I  P+    L S +W ++     +    
Sbjct: 368 PAEYRKMF------------DRLSVFPPS-AHI--PTI---LLSLIWFDV-----IKSDV 404

Query: 259 RGPDTELLVANPVELSGKGRPLVFHDITLALKM--------------------------- 291
                +L   + VE   K   +    I L LK+                           
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDL 464

Query: 292 ----LDICIFSAEIGRHMIG---DREWEVYR-VLLDEGDGLSVPRNKIE 332
               LD   +S  IG H+          ++R V LD          KI 
Sbjct: 465 IPPYLDQYFYS-HIGHHLKNIEHPERMTLFRMVFLD----FRFLEQKIR 508

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A Length = 88

 Score = 39.2 bits (92), Expect = 1e-04
 Identities = 12/53 (22%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 44 LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGK-VMDL-FFVTDTREL 94
          +++   D+ G+   +T V+ + +  I  + +    DG    +L  FV +T +L
Sbjct: 8  IRIVGEDKNGMTNQITGVISKFDTNIRTIVL-NAKDGIFTCNLMIFVKNTDKL 59

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	343
2nyi_A	195	Unknown protein; protein structure initiative, PSI	99.75
2nyi_A	195	Unknown protein; protein structure initiative, PSI	99.75
1u8s_A	192	Glycine cleavage system transcriptional repressor,	99.7
1u8s_A	192	Glycine cleavage system transcriptional repressor,	99.68
3p96_A	415	Phosphoserine phosphatase SERB; ssgcid, structural	98.82
3p96_A	415	Phosphoserine phosphatase SERB; ssgcid, structural	98.82
2f06_A	144	Conserved hypothetical protein; structural genomic	98.3
1zpv_A	91	ACT domain protein; structural genomics, PSI, prot	98.19
1zpv_A	91	ACT domain protein; structural genomics, PSI, prot	98.15
2f06_A	144	Conserved hypothetical protein; structural genomic	98.06
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	97.97
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	97.81
2re1_A	167	Aspartokinase, alpha and beta subunits; structural	97.72
3n0v_A	286	Formyltetrahydrofolate deformylase; formyl transfe	97.67
3nrb_A	287	Formyltetrahydrofolate deformylase; N-terminal ACT	97.65
3obi_A	288	Formyltetrahydrofolate deformylase; structural gen	97.63
3obi_A	288	Formyltetrahydrofolate deformylase; structural gen	97.61
3nrb_A	287	Formyltetrahydrofolate deformylase; N-terminal ACT	97.59
2re1_A	167	Aspartokinase, alpha and beta subunits; structural	97.57
3o1l_A	302	Formyltetrahydrofolate deformylase; structural gen	97.56
3n0v_A	286	Formyltetrahydrofolate deformylase; formyl transfe	97.52
3o1l_A	302	Formyltetrahydrofolate deformylase; structural gen	97.51
3lou_A	292	Formyltetrahydrofolate deformylase; structural gen	97.48
3lou_A	292	Formyltetrahydrofolate deformylase; structural gen	97.47
2dt9_A	167	Aspartokinase; protein-ligand complex, regulatory	97.39
2dtj_A	178	Aspartokinase; protein-ligand complex, regulatory	97.34
2f1f_A	164	Acetolactate synthase isozyme III small subunit; f	97.21
2f1f_A	164	Acetolactate synthase isozyme III small subunit; f	97.13
3l76_A	600	Aspartokinase; allostery, ACT domains, kinase tran	97.08
3l76_A	600	Aspartokinase; allostery, ACT domains, kinase tran	97.02
2pc6_A	165	Probable acetolactate synthase isozyme III (small;	96.99
2pc6_A	165	Probable acetolactate synthase isozyme III (small;	96.94
2dtj_A	178	Aspartokinase; protein-ligand complex, regulatory	96.85
2dt9_A	167	Aspartokinase; protein-ligand complex, regulatory	96.8
3s1t_A	181	Aspartokinase; ACT domain, threonine binding, regu	96.74
3s1t_A	181	Aspartokinase; ACT domain, threonine binding, regu	96.53
2fgc_A	193	Acetolactate synthase, small subunit; regulatory s	96.45
2fgc_A	193	Acetolactate synthase, small subunit; regulatory s	96.41
2jhe_A	190	Transcription regulator TYRR; aromatic hydrocarbon	96.37
4go7_X	200	Aspartokinase; transferase; 2.00A {Mycobacterium t	96.36
1y7p_A	223	Hypothetical protein AF1403; structural genomics,	96.16
4go7_X	200	Aspartokinase; transferase; 2.00A {Mycobacterium t	96.02
3ab4_A	421	Aspartokinase; aspartate kinase, concerted inhibit	95.97
1y7p_A	223	Hypothetical protein AF1403; structural genomics,	95.91
3ab4_A	421	Aspartokinase; aspartate kinase, concerted inhibit	95.5
2jhe_A	190	Transcription regulator TYRR; aromatic hydrocarbon	95.3
3c1m_A	473	Probable aspartokinase; allosteric inhibition, thr	94.92
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	93.48
3tvi_A	446	Aspartokinase; structural genomics, ACT domains, r	92.56
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	92.0
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	91.9
3c1m_A	473	Probable aspartokinase; allosteric inhibition, thr	91.89
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	91.77
3tvi_A	446	Aspartokinase; structural genomics, ACT domains, r	91.72
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	91.62
2qmx_A	283	Prephenate dehydratase; APC86053, L-Phe inhibition	91.14
2qmx_A	283	Prephenate dehydratase; APC86053, L-Phe inhibition	90.15
3mwb_A	313	Prephenate dehydratase; L-Phe, PSI, MCSG, structur	90.12
3luy_A	329	Probable chorismate mutase; structural genomics, A	89.84
2qmw_A	267	PDT, prephenate dehydratase; APC85812, prephenate	89.82
3luy_A	329	Probable chorismate mutase; structural genomics, A	89.31
3mah_A	157	Aspartokinase; aspartate kinase, structural genomi	88.93
2cdq_A	510	Aspartokinase; aspartate kinase, amino acid metabo	88.58
2cdq_A	510	Aspartokinase; aspartate kinase, amino acid metabo	88.57
3mwb_A	313	Prephenate dehydratase; L-Phe, PSI, MCSG, structur	87.95
2qmw_A	267	PDT, prephenate dehydratase; APC85812, prephenate	87.81
3mah_A	157	Aspartokinase; aspartate kinase, structural genomi	87.46
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	85.17
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	84.69

>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}

Probab=99.75  E-value=6.2e-18  Score=149.42  Aligned_cols=153  Identities=15%  Similarity=0.118  Sum_probs=106.3

Q ss_pred             CeEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCCcce
Q 019269          175 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLRV  254 (343)
Q Consensus       175 ~~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~~L~~~~~~  254 (343)
                      ..++|+|+|+|||||+++|+++|+++|+||.+|++++ ..|+.++ .|.+.....  ..+.+++.|++.|...+.+ ...
T Consensus         4 ~~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~-~~~~f~m-~~~v~~~~~--~~~~~~~~l~~~L~~~~~~-~~~   78 (195)
T 2nyi_A            4 QSFVVSVAGSDRVGIVHDFSWALKNISANVESSRMAC-LGGDFAM-IVLVSLNAK--DGKLIQSALESALPGFQIS-TRR   78 (195)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEE-ETTEEEE-EEEEEESSS--SSHHHHHHHHHHSTTCEEE-EEE
T ss_pred             eEEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEE-ECCeEEE-EEEEEecCc--cchhHHHHHHHHHHHHHHh-cCC
Confidence            3579999999999999999999999999999999996 4554444 677763221  2233556666665433221 111


Q ss_pred             e--eecCCCCceeeeeeeEEEEeCCCccHHHHHHHHHHhCCceEEEEEeeccccC--ceEeeeeEEEEEcCCCCCCCchH
Q 019269          255 T--VVSRGPDTELLVANPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIG--DREWEVYRVLLDEGDGLSVPRNK  330 (343)
Q Consensus       255 ~--~~~~~~~~~v~~~~~ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~~~T~g--~~~~dv~~F~v~~~~g~~l~~~~  330 (343)
                      .  +.. .....-.-.+.|+|.|+|||||+++|+++|+++|+||..+++.  |.+  ++..|.  ||++..-+.+  +..
T Consensus        79 ~~~~~~-~~~~~~~~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~--t~~~~~~~~~~--F~m~~~~~~~--~~~  151 (195)
T 2nyi_A           79 ASSVAE-RHVSPDTREYELYVEGPDSEGIVEAVTAVLAKKGANIVELETE--TLPAPFAGFTL--FRMGSRVAFP--FPL  151 (195)
T ss_dssp             CCCC-----CCTTEEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEE--EEECSSTTCEE--EEEEEEEEEE--GGG
T ss_pred             eEEEEe-CCcCCCCcEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceee--ecccccCCCCe--EEEEEEEEcC--CCc
Confidence            1  111 0000011235899999999999999999999999999999999  888  788899  9997754433  222


Q ss_pred             HHHHHHHHHc
Q 019269          331 IEEGVWKLLM  340 (343)
Q Consensus       331 ~~~~l~~~L~  340 (343)
                      . ++|+++|.
T Consensus       152 ~-~~l~~~l~  160 (195)
T 2nyi_A          152 Y-QEVVTALS  160 (195)
T ss_dssp             H-HHHHHHHH
T ss_pred             c-HHHHHHHH
Confidence            3 55555553

>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}

Probab=99.75  E-value=5.4e-18  Score=149.83  Aligned_cols=158  Identities=13%  Similarity=0.079  Sum_probs=108.7

Q ss_pred             CCEEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEecCCCcccchhHHHHHHHHHHHHhcccccc
Q 019269           39 SDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMIS  118 (343)
Q Consensus        39 ~~~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~~l~~~~~~  118 (343)
                      ...++|+|+|+|||||+++|+++|+.+|+||++|++++..+++++ .|.|..+..  ..+.+++.|++.|...+...   
T Consensus         3 ~~~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m-~~~v~~~~~--~~~~~~~~l~~~L~~~~~~~---   76 (195)
T 2nyi_A            3 TQSFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAM-IVLVSLNAK--DGKLIQSALESALPGFQIST---   76 (195)
T ss_dssp             CEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEE-EEEEEESSS--SSHHHHHHHHHHSTTCEEEE---
T ss_pred             ceEEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEE-EEEEEecCc--cchhHHHHHHHHHHHHHHhc---
Confidence            346899999999999999999999999999999999998776666 777765321  11235666666665432211   


Q ss_pred             cccccccceeecccCCCCCCchHHHhhhcccCCCCCCCCCCCCCccEEEEEeCCCCCeEEEEEEECCcccHHHHHHHHHH
Q 019269          119 CDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLK  198 (343)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~i~V~~~DrpGLl~~i~~~L~  198 (343)
                              ...      ....                     . .+    . ......++|+|.|+|||||+++|+++|+
T Consensus        77 --------~~~------~~~~---------------------~-~~----~-~~~~~~~iltv~g~DrpGiva~Vt~~La  115 (195)
T 2nyi_A           77 --------RRA------SSVA---------------------E-RH----V-SPDTREYELYVEGPDSEGIVEAVTAVLA  115 (195)
T ss_dssp             --------EEC------CCC------------------------------C-CTTEEEEEEEEEEECCTTHHHHHHHHHH
T ss_pred             --------CCe------EEEE---------------------e-CC----c-CCCCcEEEEEEEeCCCcCHHHHHHHHHH
Confidence                    010      0000                     0 00    1 2334568999999999999999999999


Q ss_pred             hCCeeEEEEEEEEeecC--CEEEEEEEEe-cCCCCCCChHHHHHHHHHHHHHH
Q 019269          199 DYNIQVSYGRFSRRQRG--NCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMEL  248 (343)
Q Consensus       199 ~~glnI~~A~i~t~t~g--~~~~d~F~v~-~~g~~i~~~~~~~~l~~~L~~~L  248 (343)
                      ++|+||.+++..+  .+  ++..+.|++. ..+.+  +... +.|+++|....
T Consensus       116 ~~g~nI~~~~~~t--~~~~~~~~~~F~m~~~~~~~--~~~~-~~l~~~l~~~a  163 (195)
T 2nyi_A          116 KKGANIVELETET--LPAPFAGFTLFRMGSRVAFP--FPLY-QEVVTALSRVE  163 (195)
T ss_dssp             HTTCEEEEEEEEE--EECSSTTCEEEEEEEEEEEE--GGGH-HHHHHHHHHHH
T ss_pred             HcCCCEEEceeee--cccccCCCCeEEEEEEEEcC--CCcc-HHHHHHHHHHH
Confidence            9999999999984  43  3345778774 22222  1234 67888876543

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5

Probab=99.70  E-value=4.6e-16  Score=136.86  Aligned_cols=134  Identities=13%  Similarity=0.098  Sum_probs=98.1

Q ss_pred             eEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCCcce-
Q 019269          176 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLRV-  254 (343)
Q Consensus       176 ~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~~L~~~~~~-  254 (343)
                      .++|+|+|+||||++++|+++|+++|+||.++++++ +. +.+.-.|.+...      ....+.|++.|.+.. ++... 
T Consensus         6 ~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~-~~-~~f~~~~~v~~~------~~~~~~l~~~L~~~~-~~~~~~   76 (192)
T 1u8s_A            6 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAM-FG-KEFTLLMLISGS------PSNITRVETTLPLLG-QQHDLI   76 (192)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEE-ET-TEEEEEEEEEEC------HHHHHHHHHHHHHHH-HHHTCE
T ss_pred             EEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeee-cC-CceEEEEEEecC------CCCHHHHHHHHHHHH-HhcCCE
Confidence            478999999999999999999999999999999985 44 455546777521      135678888887655 22222 


Q ss_pred             -eee--cCCCCceeeeeeeEEEEeCCCccHHHHHHHHHHhCCceEEEEEeeccccCc----eEeeeeEEEEEcCC
Q 019269          255 -TVV--SRGPDTELLVANPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGD----REWEVYRVLLDEGD  322 (343)
Q Consensus       255 -~~~--~~~~~~~v~~~~~ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~~~T~g~----~~~dv~~F~v~~~~  322 (343)
                       .+.  .+.....-...++|+|.++||||++++|+.+|+++|+||..++..  |.++    +..|.  ||++..-
T Consensus        77 ~~~~~~~~~~~~~~~~~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~--t~~~~~~~~~~~~--F~~~~~~  147 (192)
T 1u8s_A           77 TMMKRTSPHDHQTHAYTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQ--TISKDKLHSEQNQ--FHIAISA  147 (192)
T ss_dssp             EEEEEECCCCCCCCSEEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEE--EEC--------CE--EEEEEEE
T ss_pred             EEEEeCCCCCCccCCceEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhh--cccCCccCCCCCE--EEEEEEE
Confidence             111  111111111235899999999999999999999999999999999  8885    68899  9987653

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5

Probab=99.68  E-value=2e-15  Score=132.78  Aligned_cols=156  Identities=10%  Similarity=0.052  Sum_probs=107.2

Q ss_pred             CEEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEecCCCcccchhHHHHHHHHHHHHhccccccc
Q 019269           40 DVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMISC  119 (343)
Q Consensus        40 ~~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~~l~~~~~~~  119 (343)
                      ..+.|+|+|+||||++++++++|+.+|+||+++++++..++++ -.|.|..+      +..++.|++.|........   
T Consensus         5 ~~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~-~~~~v~~~------~~~~~~l~~~L~~~~~~~~---   74 (192)
T 1u8s_A            5 QHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFT-LLMLISGS------PSNITRVETTLPLLGQQHD---   74 (192)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEE-EEEEEEEC------HHHHHHHHHHHHHHHHHHT---
T ss_pred             cEEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceE-EEEEEecC------CCCHHHHHHHHHHHHHhcC---
Confidence            4578999999999999999999999999999999999754444 47777642      2467788888887552211   


Q ss_pred             ccccccceeecccCCCCCCchHHHhhhcccCCCCCCCCCCCCCccEEEEEeCCCCCeEEEEEEECCcccHHHHHHHHHHh
Q 019269          120 DVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKD  199 (343)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~i~V~~~DrpGLl~~i~~~L~~  199 (343)
                            ....        .. +.        +          .++     +..+...++|+|.++||||++++|+++|++
T Consensus        75 ------~~~~--------~~-~~--------~----------~~~-----~~~~~~~~~l~v~~~D~~Gil~~v~~~l~~  116 (192)
T 1u8s_A           75 ------LITM--------MK-RT--------S----------PHD-----HQTHAYTVEVYVESDDKLGLTEKFTQFFAQ  116 (192)
T ss_dssp             ------CEEE--------EE-EE--------C----------CCC-----CCCCSEEEEEEEEESCCTTHHHHHHHHHHH
T ss_pred             ------CEEE--------EE-eC--------C----------CCC-----CccCCceEEEEEEeCCCccHHHHHHHHHHH
Confidence                  0110        00 00        0          011     233446789999999999999999999999


Q ss_pred             CCeeEEEEEEEEeecCC----EEEEEEEEe-cCCCCCCChHHHHHHHHHHHHH
Q 019269          200 YNIQVSYGRFSRRQRGN----CEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWME  247 (343)
Q Consensus       200 ~glnI~~A~i~t~t~g~----~~~d~F~v~-~~g~~i~~~~~~~~l~~~L~~~  247 (343)
                      +|+||.+++..  +.+.    +..+.|++. ..+.+  +....+.|+++|.+.
T Consensus       117 ~~~nI~~~~~~--t~~~~~~~~~~~~F~~~~~~~~~--~~~~~~~l~~~l~~~  165 (192)
T 1u8s_A          117 RQIGMASLSAQ--TISKDKLHSEQNQFHIAISARVD--SGCNLMQLQEEFDAL  165 (192)
T ss_dssp             TTCCEEEEEEE--EEC--------CEEEEEEEEEEC--TTSCHHHHHHHHHHH
T ss_pred             cCCcHHHhhhh--cccCCccCCCCCEEEEEEEEeCC--CCCCHHHHHHHHHHH
Confidence            99999999988  4442    466778774 22111  122356777877653

>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}

Probab=98.82  E-value=4.1e-07  Score=88.46  Aligned_cols=126  Identities=9%  Similarity=0.092  Sum_probs=86.6

Q ss_pred             CCEEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEecCCCcccchhHHHHHHHHHHHHhcccccc
Q 019269           39 SDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMIS  118 (343)
Q Consensus        39 ~~~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~~l~~~~~~  118 (343)
                      ...++|+|.|+||||+.+.++++|+.+|+||++.+.+.. .|++.-...+..+.+    ....+.|++.|.. +..+.  
T Consensus        10 ~~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~-~~~f~~~~~~~~~~~----~~~~~~l~~~l~~-~~~~~--   81 (415)
T 3p96_A           10 KVSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVI-RHRLTLGVLVCCPAD----VADGPALRHDVEA-AIRKV--   81 (415)
T ss_dssp             CEEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEE-TTEEEEEEEEEECHH----HHTSHHHHHHHHH-HHHHT--
T ss_pred             CCeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEE-CCEeEEEEEEEecCC----cCCHHHHHHHHHH-HHHHc--
Confidence            356899999999999999999999999999999999886 566644444432211    0123577777765 32211  


Q ss_pred             cccccccceeecccCCCCCCchHHHhhhcccCCCCCCCCCCCCCccEEEEEeCCCCCeEEEEEEECC-cccHHHHHHHHH
Q 019269          119 CDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQD-HKGLLYDIMRTL  197 (343)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~i~V~~~D-rpGLl~~i~~~L  197 (343)
                            +-+..        +...         .          ..+     ......+..+++.++| ++|++.+|+.++
T Consensus        82 ------~~~~~--------~~~~---------~----------~~~-----~~~~~~~~~~~llg~~~~~~~~~~i~~~l  123 (415)
T 3p96_A           82 ------GLDVS--------IERS---------D----------DVP-----IIREPSTHTIFVLGRPITAAAFGAVAREV  123 (415)
T ss_dssp             ------TCEEE--------EEEC---------S----------SSC-----SSCCCCSEEEEEEESSCCHHHHHHHHHHH
T ss_pred             ------CeEEE--------EEEC---------C----------ccc-----ccCCCCcEEEEEEeCCCCHHHHHHHHHHH
Confidence                  01110        0000         0          000     0123457899999999 999999999999


Q ss_pred             HhCCeeEEEEEEE
Q 019269          198 KDYNIQVSYGRFS  210 (343)
Q Consensus       198 ~~~glnI~~A~i~  210 (343)
                      +++|+||.+.+-.
T Consensus       124 ~~~~~Ni~~l~~~  136 (415)
T 3p96_A          124 AALGVNIDLIRGV  136 (415)
T ss_dssp             HHTTCEEEEEEEE
T ss_pred             HHcCCCccceeec
Confidence            9999999987765

>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}

Probab=98.82  E-value=9.7e-08  Score=92.92  Aligned_cols=121  Identities=7%  Similarity=0.029  Sum_probs=83.8

Q ss_pred             CeEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCCcce
Q 019269          175 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLRV  254 (343)
Q Consensus       175 ~~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~~L~~~~~~  254 (343)
                      ..++|+|.|+|||||++.|+++|+++|+||.+++-+  ..++.+.-...+..+...    ...+.|++.|.. +..+..+
T Consensus        11 ~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~--~~~~~f~~~~~~~~~~~~----~~~~~l~~~l~~-~~~~~~~   83 (415)
T 3p96_A           11 VSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQV--VIRHRLTLGVLVCCPADV----ADGPALRHDVEA-AIRKVGL   83 (415)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEE--EETTEEEEEEEEEECHHH----HTSHHHHHHHHH-HHHHTTC
T ss_pred             CeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeE--EECCEeEEEEEEEecCCc----CCHHHHHHHHHH-HHHHcCe
Confidence            457899999999999999999999999999999887  455565433334321110    022567777643 4433333


Q ss_pred             e--eecCCCCcee--eeeeeEEEEeCC-CccHHHHHHHHHHhCCceEEEEEee
Q 019269          255 T--VVSRGPDTEL--LVANPVELSGKG-RPLVFHDITLALKMLDICIFSAEIG  302 (343)
Q Consensus       255 ~--~~~~~~~~~v--~~~~~ieV~~~D-rpGLL~~I~~~l~~~gi~I~~AkI~  302 (343)
                      +  +......++.  .-...+++.+.| +||++.+|+.+|+++|+||...+..
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~llg~~~~~~~~~~i~~~l~~~~~Ni~~l~~~  136 (415)
T 3p96_A           84 DVSIERSDDVPIIREPSTHTIFVLGRPITAAAFGAVAREVAALGVNIDLIRGV  136 (415)
T ss_dssp             EEEEEECSSSCSSCCCCSEEEEEEESSCCHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred             EEEEEECCcccccCCCCcEEEEEEeCCCCHHHHHHHHHHHHHcCCCccceeec
Confidence            2  2211111111  112478999999 9999999999999999999998887

>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11

Probab=98.30  E-value=1.9e-05  Score=65.32  Aligned_cols=100  Identities=16%  Similarity=0.076  Sum_probs=67.7

Q ss_pred             EEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCCcceee
Q 019269          177 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLRVTV  256 (343)
Q Consensus       177 t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~~L~~~~~~~~  256 (343)
                      ..|+|..+|+||.++++++.|++.|+||....+.. +. +...  +.+..     .+++   +.++.|.+ . +- .   
T Consensus         7 ~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~-~~-~~~~--~~~~~-----~d~~---~a~~~L~~-~-G~-~---   68 (144)
T 2f06_A            7 KQLSIFLENKSGRLTEVTEVLAKENINLSALCIAE-NA-DFGI--LRGIV-----SDPD---KAYKALKD-N-HF-A---   68 (144)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEE-CS-SCEE--EEEEE-----SCHH---HHHHHHHH-T-TC-C---
T ss_pred             EEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEe-cC-CCCE--EEEEe-----CCHH---HHHHHHHH-c-CC-e---
Confidence            57888999999999999999999999999765542 22 2111  22221     2232   33344432 1 11 1   


Q ss_pred             ecCCCCceeeeeeeEEEEeCCCccHHHHHHHHHHhCCceEEEEEee
Q 019269          257 VSRGPDTELLVANPVELSGKGRPLVFHDITLALKMLDICIFSAEIG  302 (343)
Q Consensus       257 ~~~~~~~~v~~~~~ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~  302 (343)
                              +.....+-+..+|+||.+++|+++|++.|+||.+....
T Consensus        69 --------v~~~svv~v~~~d~pGvla~i~~~L~~~~InI~~~~~~  106 (144)
T 2f06_A           69 --------VNITDVVGISCPNVPGALAKVLGFLSAEGVFIEYMYSF  106 (144)
T ss_dssp             --------EEEEEEEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             --------EeeeeEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEE
Confidence                    11123567778899999999999999999999776654

>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7

Probab=98.19  E-value=1.2e-05  Score=61.09  Aligned_cols=66  Identities=12%  Similarity=0.199  Sum_probs=52.1

Q ss_pred             CEEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEecCCCcccchhHHHHHHHHHHHH
Q 019269           40 DVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTI  111 (343)
Q Consensus        40 ~~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~~  111 (343)
                      ..+.|+|.++||||++++++++|+.+|+||.+.+.++.. |.+.-.+.+..++     ...++.|.+.|.+.
T Consensus         4 ~~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~-~~~~~~i~v~~~~-----~~~l~~l~~~L~~~   69 (91)
T 1zpv_A            4 MKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLD-EYFTMMAVVSSDE-----KQDFTYLRNEFEAF   69 (91)
T ss_dssp             EEEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEET-TEEEEEEEEEESS-----CCCHHHHHHHHHHH
T ss_pred             ceEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEc-CEEEEEEEEEeCC-----CCCHHHHHHHHHHH
Confidence            457899999999999999999999999999999998864 7766666664322     22456777777763

>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7

Probab=98.15  E-value=1.9e-05  Score=59.90  Aligned_cols=65  Identities=9%  Similarity=0.146  Sum_probs=47.8

Q ss_pred             CeEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHHHH
Q 019269          175 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWM  246 (343)
Q Consensus       175 ~~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~  246 (343)
                      ..+.|+|.++||||++++|+++|+++|+||.+....+  .++.+.-.+.+...+.     ..++.|.+.|.+
T Consensus         4 ~~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~--~~~~~~~~i~v~~~~~-----~~l~~l~~~L~~   68 (91)
T 1zpv_A            4 MKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTV--LDEYFTMMAVVSSDEK-----QDFTYLRNEFEA   68 (91)
T ss_dssp             EEEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEE--ETTEEEEEEEEEESSC-----CCHHHHHHHHHH
T ss_pred             ceEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEE--EcCEEEEEEEEEeCCC-----CCHHHHHHHHHH
Confidence            3578999999999999999999999999999988874  3355555555542221     134567777654

>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11

Probab=98.06  E-value=0.00053  Score=56.49  Aligned_cols=112  Identities=21%  Similarity=0.232  Sum_probs=72.8

Q ss_pred             EEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEecCCCcccchhHHHHHHHHHHHHhcccccccc
Q 019269           41 VFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMISCD  120 (343)
Q Consensus        41 ~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~~l~~~~~~~~  120 (343)
                      ...|+|..+|+||.++++++.|+..|+||..-.+....+. .+-.|.+.       ++   ++.++.|++ . +.     
T Consensus         6 ~~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~~-~~~~~~~~-------d~---~~a~~~L~~-~-G~-----   67 (144)
T 2f06_A            6 AKQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADF-GILRGIVS-------DP---DKAYKALKD-N-HF-----   67 (144)
T ss_dssp             EEEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSC-EEEEEEES-------CH---HHHHHHHHH-T-TC-----
T ss_pred             EEEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCCC-CEEEEEeC-------CH---HHHHHHHHH-c-CC-----
Confidence            3578899999999999999999999999997665543332 11123322       12   233333433 1 10     


Q ss_pred             cccccceeecccCCCCCCchHHHhhhcccCCCCCCCCCCCCCccEEEEEeCCCCCeEEEEEEECCcccHHHHHHHHHHhC
Q 019269          121 VEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDY  200 (343)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~i~V~~~DrpGLl~~i~~~L~~~  200 (343)
                                                                ...  .       ..++.+..+|+||.+++++++|++.
T Consensus        68 ------------------------------------------~v~--~-------~svv~v~~~d~pGvla~i~~~L~~~   96 (144)
T 2f06_A           68 ------------------------------------------AVN--I-------TDVVGISCPNVPGALAKVLGFLSAE   96 (144)
T ss_dssp             ------------------------------------------CEE--E-------EEEEEEEEESSTTHHHHHHHHHHHT
T ss_pred             ------------------------------------------eEe--e-------eeEEEEEeCCCCcHHHHHHHHHHHC
Confidence                                                      000  0       1357778899999999999999999


Q ss_pred             CeeEEEEEEEEeecCCEEEEEEE
Q 019269          201 NIQVSYGRFSRRQRGNCEIDLFI  223 (343)
Q Consensus       201 glnI~~A~i~t~t~g~~~~d~F~  223 (343)
                      |+||.....+.  .+....-.|.
T Consensus        97 ~InI~~~~~~~--~~~~~~~~i~  117 (144)
T 2f06_A           97 GVFIEYMYSFA--NNNVANVVIR  117 (144)
T ss_dssp             TCCEEEEEEEE--ETTEEEEEEE
T ss_pred             CCCEEEEEEEc--cCCcEEEEEE
Confidence            99998655441  3345543343

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A

Probab=97.97  E-value=4.3e-05  Score=57.25  Aligned_cols=64  Identities=9%  Similarity=0.006  Sum_probs=47.5

Q ss_pred             eeeEEEEeCCCccHHHHHHHHHHhCCceEEEEEeeccccCceEeeeeEEEEEcCCCCCCCchHHHHHHHHHHcC
Q 019269          268 ANPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLMG  341 (343)
Q Consensus       268 ~~~ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~~~T~g~~~~dv~~F~v~~~~g~~l~~~~~~~~l~~~L~~  341 (343)
                      .+.+.|.+.||||+|++|+.+|++.|+||.++++.  +.++.+..+  |.+...+     .+ ..+++.++|..
T Consensus         5 ~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~--~~~~~~~~~--i~v~~~~-----~~-~l~~l~~~L~~   68 (88)
T 2ko1_A            5 LAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLN--AKDGIFTCN--LMIFVKN-----TD-KLTTLMDKLRK   68 (88)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEE--ECSSEEEEE--EEEEESS-----HH-HHHHHHHHHTT
T ss_pred             EEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEE--EcCCEEEEE--EEEEECC-----HH-HHHHHHHHHhc
Confidence            45789999999999999999999999999999998  666544444  4444332     22 34666666653

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A

Probab=97.81  E-value=0.00014  Score=54.39  Aligned_cols=49  Identities=12%  Similarity=0.274  Sum_probs=40.5

Q ss_pred             EEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEec
Q 019269           41 VFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTD   90 (343)
Q Consensus        41 ~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~   90 (343)
                      .+.|.|.++||||++++|+++|+..|+||.+..+.+.. +.+...|.+..
T Consensus         5 ~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~-~~~~~~i~v~~   53 (88)
T 2ko1_A            5 LAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKD-GIFTCNLMIFV   53 (88)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECS-SEEEEEEEEEE
T ss_pred             EEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcC-CEEEEEEEEEE
Confidence            45788999999999999999999999999999998854 46555565543

>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}

Probab=97.72  E-value=0.00042  Score=58.81  Aligned_cols=108  Identities=17%  Similarity=0.078  Sum_probs=70.0

Q ss_pred             CeEEEEEEE-CCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCCcc
Q 019269          175 GHTLVQIVC-QDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLR  253 (343)
Q Consensus       175 ~~t~i~V~~-~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~~L~~~~~  253 (343)
                      +.+.|+|.+ +|+||.++++.++|+++|+||....... +.++...-.|.+..+        ..++..+.|.+ +..++.
T Consensus        24 ~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~-~~~g~~~isf~v~~~--------~~~~a~~~l~~-~~~~l~   93 (167)
T 2re1_A           24 NQARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNV-GSEGTTDFSFTVPRG--------DYKQTLEILSE-RQDSIG   93 (167)
T ss_dssp             CCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC-----CEEEEEEEECGG--------GHHHHHHHHHH-SSTTTT
T ss_pred             CEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCC-CCCCeeEEEEEEech--------HHHHHHHHHHH-HHHHcC
Confidence            457888884 9999999999999999999998543321 112333334666421        11233344433 333222


Q ss_pred             eeeecCCCCceeee---eeeEEEEeCC---CccHHHHHHHHHHhCCceEEEEE
Q 019269          254 VTVVSRGPDTELLV---ANPVELSGKG---RPLVFHDITLALKMLDICIFSAE  300 (343)
Q Consensus       254 ~~~~~~~~~~~v~~---~~~ieV~~~D---rpGLL~~I~~~l~~~gi~I~~Ak  300 (343)
                      .        ..+..   -..+.|.+.+   +||+++++..+|.+.||||....
T Consensus        94 ~--------~~i~~~~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~is  138 (167)
T 2re1_A           94 A--------ASIDGDDTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMIS  138 (167)
T ss_dssp             C--------SEEEEESSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEEE
T ss_pred             C--------ceEEecCCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEEE
Confidence            2        11111   1378888886   99999999999999999999843

>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}

Probab=97.67  E-value=0.0012  Score=61.13  Aligned_cols=73  Identities=11%  Similarity=0.072  Sum_probs=49.8

Q ss_pred             eEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCCcce
Q 019269          176 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLRV  254 (343)
Q Consensus       176 ~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~~L~~~~~~  254 (343)
                      .++|+|.|+||||++++|+++|+++|+||.+++-++....+.+.-...+.... ..    ..+.|+++|. .+..+...
T Consensus         8 ~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~-~~----~~~~L~~~f~-~la~~l~m   80 (286)
T 3n0v_A            8 TWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQPD-DF----DEAGFRAGLA-ERSEAFGM   80 (286)
T ss_dssp             CEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCS-SC----CHHHHHHHHH-HHHGGGTC
T ss_pred             cEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEecCC-CC----CHHHHHHHHH-HHHHHcCC
Confidence            47899999999999999999999999999998876433344543222233211 11    2467878774 34555443

>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}

Probab=97.65  E-value=0.0012  Score=60.96  Aligned_cols=108  Identities=9%  Similarity=0.097  Sum_probs=66.0

Q ss_pred             CeEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCCcce
Q 019269          175 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLRV  254 (343)
Q Consensus       175 ~~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~~L~~~~~~  254 (343)
                      ..++|+|.|+|||||+++|+++|+++|+||.+++-++....+.+.-...+..++  .    ..+.|+++|. .+..+...
T Consensus         6 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~--~----~~~~L~~~f~-~la~~~~m   78 (287)
T 3nrb_A            6 NQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSVEIPV--A----GVNDFNSAFG-KVVEKYNA   78 (287)
T ss_dssp             TEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCC---------CHHHHHHH-HHHGGGTC
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEEEcCC--C----CHHHHHHHHH-HHHHHcCC
Confidence            457999999999999999999999999999999876433344544222222211  1    1236777764 34555444


Q ss_pred             e--eecCCCCceeeeeeeEEEEeCCCccHHHHHHHHHHhCCce
Q 019269          255 T--VVSRGPDTELLVANPVELSGKGRPLVFHDITLALKMLDIC  295 (343)
Q Consensus       255 ~--~~~~~~~~~v~~~~~ieV~~~DrpGLL~~I~~~l~~~gi~  295 (343)
                      +  +.....+.      .|-|.+.-+..-|.++-....+-.++
T Consensus        79 ~~~l~~~~~~~------ri~vl~Sg~g~nl~~ll~~~~~g~l~  115 (287)
T 3nrb_A           79 EWWFRPRTDRK------KVVIMVSKFDHCLGDLLYRHRLGELD  115 (287)
T ss_dssp             EEEEEETTCCC------EEEEEECSCCHHHHHHHHHHHHTSSC
T ss_pred             eeEeeccCCCc------EEEEEEeCCCcCHHHHHHHHHCCCCC
Confidence            3  22222112      33444445556777777777665553

>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}

Probab=97.63  E-value=0.0019  Score=59.68  Aligned_cols=67  Identities=18%  Similarity=0.245  Sum_probs=50.0

Q ss_pred             CEEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEec-CCCEEEEEEEEecCCCcccchhHHHHHHHHHHH
Q 019269           40 DVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTT-PDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT  110 (343)
Q Consensus        40 ~~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~-~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~  110 (343)
                      ..+.|+|.|+||||+.+++++.|+.+|+||.+.+.++. .+|++.-...+..+.+.    ...+.|++.|..
T Consensus         5 ~~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~----~~~~~L~~~f~~   72 (288)
T 3obi_A            5 HQYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAKV----IPLASLRTGFGV   72 (288)
T ss_dssp             CEEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEESSCC----CCHHHHHHHHHH
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcCCCC----CCHHHHHHHHHH
Confidence            45789999999999999999999999999999999853 36776555545432221    124677777765

>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}

Probab=97.61  E-value=0.0027  Score=58.74  Aligned_cols=110  Identities=13%  Similarity=0.158  Sum_probs=68.0

Q ss_pred             eEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCCccee
Q 019269          176 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLRVT  255 (343)
Q Consensus       176 ~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~~L~~~~~~~  255 (343)
                      .++|+|.|+||||++++|+++|+++|+||.+++-++....+.+.-...+.......    ..+.|+++|.. +..+...+
T Consensus         6 ~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~----~~~~L~~~f~~-la~~~~m~   80 (288)
T 3obi_A            6 QYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAKVI----PLASLRTGFGV-IAAKFTMG   80 (288)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEESSCCC----CHHHHHHHHHH-HHHHTTCE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcCCCCC----CHHHHHHHHHH-HHHHcCCE
Confidence            47899999999999999999999999999999876433445544333333221111    24567777643 44443333


Q ss_pred             --eecCCCCceeeeeeeEEEEeCCCccHHHHHHHHHHhCCceE
Q 019269          256 --VVSRGPDTELLVANPVELSGKGRPLVFHDITLALKMLDICI  296 (343)
Q Consensus       256 --~~~~~~~~~v~~~~~ieV~~~DrpGLL~~I~~~l~~~gi~I  296 (343)
                        +.....+.      .|-|....+..-|.++-....+-.+++
T Consensus        81 ~~l~~~~~~~------ri~vl~Sg~g~nl~~ll~~~~~g~l~~  117 (288)
T 3obi_A           81 WHMRDRETRR------KVMLLVSQSDHCLADILYRWRVGDLHM  117 (288)
T ss_dssp             EEEEETTSCE------EEEEEECSCCHHHHHHHHHHHTTSSCE
T ss_pred             EEeeccCCCc------EEEEEEcCCCCCHHHHHHHHHCCCCCe
Confidence              22221111      344555555567777777776655543

>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}

Probab=97.59  E-value=0.003  Score=58.41  Aligned_cols=66  Identities=17%  Similarity=0.217  Sum_probs=47.6

Q ss_pred             CCEEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEec-CCCEEEEEEEEecCCCcccchhHHHHHHHHHHH
Q 019269           39 SDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTT-PDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT  110 (343)
Q Consensus        39 ~~~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~-~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~  110 (343)
                      ...+.|+|.|+||||+.+++++.|+.+|+||.+++.++. ..|++.-...+..+.      ...+.|++.|..
T Consensus         5 ~~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~------~~~~~L~~~f~~   71 (287)
T 3nrb_A            5 NNQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSVEIPV------AGVNDFNSAFGK   71 (287)
T ss_dssp             TTEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCC---------CHHHHHHHH
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEEEcCC------CCHHHHHHHHHH
Confidence            346899999999999999999999999999999999853 367665444443221      123366666654

>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}

Probab=97.57  E-value=0.0058  Score=51.63  Aligned_cols=110  Identities=18%  Similarity=0.256  Sum_probs=72.4

Q ss_pred             CCEEEEEEEE-cCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEecCCCcccchhHHHHHHHHHHHHhccccc
Q 019269           39 SDVFLLKLSC-YDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMI  117 (343)
Q Consensus        39 ~~~~~I~V~~-~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~~l~~~~~  117 (343)
                      .+...|+|.+ +|+||.++++..+|+.+|+||.--......+|..--.|.|..        ...++..+.|++ +..+. 
T Consensus        23 ~~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~~g~~~isf~v~~--------~~~~~a~~~l~~-~~~~l-   92 (167)
T 2re1_A           23 KNQARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGSEGTTDFSFTVPR--------GDYKQTLEILSE-RQDSI-   92 (167)
T ss_dssp             CCCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC----CEEEEEEEECG--------GGHHHHHHHHHH-SSTTT-
T ss_pred             CCEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCCCeeEEEEEEec--------hHHHHHHHHHHH-HHHHc-
Confidence            4567888885 999999999999999999999844332222454434566643        112333344444 21110 


Q ss_pred             ccccccccceeecccCCCCCCchHHHhhhcccCCCCCCCCCCCCCccEEEEEeCCCCCeEEEEEEECC---cccHHHHHH
Q 019269          118 SCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQD---HKGLLYDIM  194 (343)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~i~V~~~D---rpGLl~~i~  194 (343)
                                           .                       ...+.+.    .+...+.|.+.+   +||+++++.
T Consensus        93 ---------------------~-----------------------~~~i~~~----~~~a~vsvvG~~m~~~~Gv~a~i~  124 (167)
T 2re1_A           93 ---------------------G-----------------------AASIDGD----DTVCKVSAVGLGMRSHVGVAAKIF  124 (167)
T ss_dssp             ---------------------T-----------------------CSEEEEE----SSEEEEEEECSSCTTCCCHHHHHH
T ss_pred             ---------------------C-----------------------CceEEec----CCEEEEEEECCCcCCCcCHHHHHH
Confidence                                 0                       0122322    356789999977   999999999


Q ss_pred             HHHHhCCeeEEE
Q 019269          195 RTLKDYNIQVSY  206 (343)
Q Consensus       195 ~~L~~~glnI~~  206 (343)
                      .+|++.|+||..
T Consensus       125 ~aL~~~~InI~~  136 (167)
T 2re1_A          125 RTLAEEGINIQM  136 (167)
T ss_dssp             HHHHHTTCCCCE
T ss_pred             HHHHHCCCcEEE
Confidence            999999999986

>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}

Probab=97.56  E-value=0.003  Score=58.80  Aligned_cols=67  Identities=13%  Similarity=0.132  Sum_probs=46.3

Q ss_pred             CeEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHHH
Q 019269          175 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLW  245 (343)
Q Consensus       175 ~~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~  245 (343)
                      ..++|+|.|+|||||+++|+++|+++|+||.+++-++....+.+.-...+..++...    ..+.|+++|.
T Consensus        21 ~~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~~~~~~----~~~~L~~~l~   87 (302)
T 3o1l_A           21 RTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRADTLPF----DLDGFREAFT   87 (302)
T ss_dssp             CEEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEGGGSSS----CHHHHHHHHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEecCCCCC----CHHHHHHHHH
Confidence            457899999999999999999999999999999877422245544333333211111    2356777664

>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}

Probab=97.52  E-value=0.004  Score=57.49  Aligned_cols=66  Identities=15%  Similarity=0.119  Sum_probs=49.5

Q ss_pred             CEEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEec-CCCEEEEEEEEecCCCcccchhHHHHHHHHHHH
Q 019269           40 DVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTT-PDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT  110 (343)
Q Consensus        40 ~~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~-~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~  110 (343)
                      ..+.|+|.|+||||+.+++++.|+++|+||.+.+.++. ..|++.-...+..+.     ....+.|++.|..
T Consensus         7 ~~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~-----~~~~~~L~~~f~~   73 (286)
T 3n0v_A            7 DTWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQPD-----DFDEAGFRAGLAE   73 (286)
T ss_dssp             CCEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCS-----SCCHHHHHHHHHH
T ss_pred             CcEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEecCC-----CCCHHHHHHHHHH
Confidence            45789999999999999999999999999999999853 256664444444322     1235677777765

>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}

Probab=97.51  E-value=0.00055  Score=63.74  Aligned_cols=68  Identities=16%  Similarity=0.158  Sum_probs=50.2

Q ss_pred             CCEEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecC-CCEEEEEEEEecCCCcccchhHHHHHHHHHHH
Q 019269           39 SDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTP-DGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT  110 (343)
Q Consensus        39 ~~~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~-~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~  110 (343)
                      ...++|+|.|+||||+.+++++.|+.+|+||.+++.++.. .|++.-...+..+.+    ....+.|++.|..
T Consensus        20 ~~~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~~~~----~~~~~~L~~~l~~   88 (302)
T 3o1l_A           20 MRTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRADTL----PFDLDGFREAFTP   88 (302)
T ss_dssp             CCEEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEGGGS----SSCHHHHHHHHHH
T ss_pred             cceEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEecCCC----CCCHHHHHHHHHH
Confidence            3457899999999999999999999999999999998743 576655444443211    1235677777755

>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}

Probab=97.48  E-value=0.0055  Score=56.73  Aligned_cols=45  Identities=9%  Similarity=0.053  Sum_probs=37.4

Q ss_pred             CeEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEE
Q 019269          175 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEI  219 (343)
Q Consensus       175 ~~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~  219 (343)
                      ..++|++.|+||||++++|+++|+++|+||.+++-++....+.+.
T Consensus         9 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ff   53 (292)
T 3lou_A            9 HQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFF   53 (292)
T ss_dssp             CEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEE
T ss_pred             CcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceE
Confidence            357899999999999999999999999999998876433344544

>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}

Probab=97.47  E-value=0.0049  Score=57.07  Aligned_cols=70  Identities=14%  Similarity=0.221  Sum_probs=48.9

Q ss_pred             CCEEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEec-CCCEEEEEEEEecCCCcccchhHHHHHHHHHHH
Q 019269           39 SDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTT-PDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT  110 (343)
Q Consensus        39 ~~~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~-~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~  110 (343)
                      ...++|+|.|+||||+.+++++.|+++|+||.+++.++. ..|++.-...+..+...  .....+.|++.|..
T Consensus         8 ~~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~--~~~~~~~L~~~f~~   78 (292)
T 3lou_A            8 PHQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHATDDA--DALRVDALRREFEP   78 (292)
T ss_dssp             CCEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEECC------CCHHHHHHHHHH
T ss_pred             CCcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEEccCcc--cCCCHHHHHHHHHH
Confidence            446799999999999999999999999999999999853 25666444333322000  01234677777755

>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A

Probab=97.39  E-value=0.0018  Score=54.86  Aligned_cols=111  Identities=14%  Similarity=0.133  Sum_probs=69.6

Q ss_pred             CCeEEEEEEE-CCcccHHHHHHHHHHhCCeeEEEEEEEEee--cCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcC
Q 019269          174 PGHTLVQIVC-QDHKGLLYDIMRTLKDYNIQVSYGRFSRRQ--RGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQ  250 (343)
Q Consensus       174 ~~~t~i~V~~-~DrpGLl~~i~~~L~~~glnI~~A~i~t~t--~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~~L~~  250 (343)
                      .+.+.|+|.+ +|+||.++++.++|++.|+||....... +  +.+...-.|.+..+     +.++..++-+++...+..
T Consensus        14 ~~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~I~q~~-~~~~~g~~~isf~V~~~-----d~~~a~~~L~~~~~~~~~   87 (167)
T 2dt9_A           14 LDHAQIGLIGIPDQPGIAAKVFQALAERGIAVDMIIQGV-PGHDPSRQQMAFTVKKD-----FAQEALEALEPVLAEIGG   87 (167)
T ss_dssp             CSEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSCEEBCC-CCSCTTEEEEEEEEEGG-----GHHHHHHHHHHHHHHHCC
T ss_pred             CCEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEEEEcCC-CCCCCCceEEEEEEehH-----HHHHHHHHHHHHHHHhCC
Confidence            3567777776 8999999999999999999998433211 1  01233345776531     111222222223333331


Q ss_pred             CcceeeecCCCCceeeeeeeEEEEeCC---CccHHHHHHHHHHhCCceEEEEE
Q 019269          251 PLRVTVVSRGPDTELLVANPVELSGKG---RPLVFHDITLALKMLDICIFSAE  300 (343)
Q Consensus       251 ~~~~~~~~~~~~~~v~~~~~ieV~~~D---rpGLL~~I~~~l~~~gi~I~~Ak  300 (343)
                        .+.+ ...    +   ..+.|.|.+   +||+++++.++|++.||||....
T Consensus        88 --~v~~-~~~----~---a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is  130 (167)
T 2dt9_A           88 --EAIL-RPD----I---AKVSIVGVGLASTPEVPAKMFQAVASTGANIEMIA  130 (167)
T ss_dssp             --EEEE-ECS----E---EEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEEE
T ss_pred             --cEEE-eCC----E---EEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEEE
Confidence              2211 111    1   368888885   99999999999999999997654

>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*

Probab=97.34  E-value=0.0031  Score=53.98  Aligned_cols=109  Identities=19%  Similarity=0.148  Sum_probs=68.4

Q ss_pred             CeEEEEEE-ECCcccHHHHHHHHHHhCCeeEEEEEEEEee-cCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCCc
Q 019269          175 GHTLVQIV-CQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQ-RGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPL  252 (343)
Q Consensus       175 ~~t~i~V~-~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t-~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~~L~~~~  252 (343)
                      +.+.|+|. .+|+||.+++|.+.|++.|+||......+.. .++...-.|.+..        +..++..+.|.+ +..+.
T Consensus        14 ~~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~~--------~d~~~a~~~l~~-~~~~~   84 (178)
T 2dtj_A           14 SEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPR--------SDGRRAMEILKK-LQVQG   84 (178)
T ss_dssp             SEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEEH--------HHHHHHHHHHHT-TTTTT
T ss_pred             CEEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEcc--------ccHHHHHHHHHH-HHHhc
Confidence            46777774 6999999999999999999999844322100 0112222366542        122333333332 22222


Q ss_pred             ceeeecCCCCceeeee---eeEEEEeC---CCccHHHHHHHHHHhCCceEEEEE
Q 019269          253 RVTVVSRGPDTELLVA---NPVELSGK---GRPLVFHDITLALKMLDICIFSAE  300 (343)
Q Consensus       253 ~~~~~~~~~~~~v~~~---~~ieV~~~---DrpGLL~~I~~~l~~~gi~I~~Ak  300 (343)
                      ..        ..+.+.   ..|.|.|.   ++||+++++.++|++.||||....
T Consensus        85 ~~--------~~v~~~~~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~is  130 (178)
T 2dtj_A           85 NW--------TNVLYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELIS  130 (178)
T ss_dssp             TC--------SEEEEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE
T ss_pred             CC--------CeEEEeCCeEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEEEE
Confidence            21        111111   36777776   899999999999999999998854

>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6

Probab=97.21  E-value=0.0018  Score=54.85  Aligned_cols=64  Identities=17%  Similarity=0.158  Sum_probs=51.8

Q ss_pred             EEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCC-CEEEEEEEEecCCCcccchhHHHHHHHHHHH
Q 019269           41 VFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPD-GKVMDLFFVTDTRELLHTRKRKEDTYEHLKT  110 (343)
Q Consensus        41 ~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~-g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~  110 (343)
                      ...|.|.+.|+||+|++++++|+..|+||.+..+....+ |...-+|.|..      +...++++.+.|.+
T Consensus         3 ~~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~~------d~~~leqI~kqL~K   67 (164)
T 2f1f_A            3 RRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVG------DEKVLEQIEKQLHK   67 (164)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEES------CHHHHHHHHHHHHH
T ss_pred             EEEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEec------cHHHHHHHHHHHcC
Confidence            357899999999999999999999999999999986654 77766777762      24566777777776

>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6

Probab=97.13  E-value=0.0019  Score=54.80  Aligned_cols=64  Identities=6%  Similarity=0.094  Sum_probs=49.1

Q ss_pred             eEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeec-CCEEEEEEEEecCCCCCCChHHHHHHHHHHHH
Q 019269          176 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQR-GNCEIDLFIMQADGKKIVDPSKQNGLSSRLWM  246 (343)
Q Consensus       176 ~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~-g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~  246 (343)
                      ...|+|.+.|+||+|++|+++|++.|+||.+..+.. +. .+...-+|.+..      ++..+++|.+.|.+
T Consensus         3 ~~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~-t~d~~~sriti~V~~------d~~~leqI~kqL~K   67 (164)
T 2f1f_A            3 RRILSVLLENESGALSRVIGLFSQRGYNIESLTVAP-TDDPTLSRMTIQTVG------DEKVLEQIEKQLHK   67 (164)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEE-CSCSSEEEEEEEEES------CHHHHHHHHHHHHH
T ss_pred             EEEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeee-cCCCCEEEEEEEEec------cHHHHHHHHHHHcC
Confidence            357899999999999999999999999999888864 33 355555566651      24567788877754

>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}

Probab=97.08  E-value=0.089  Score=53.40  Aligned_cols=197  Identities=13%  Similarity=0.112  Sum_probs=113.7

Q ss_pred             CCEEEEEEEE-cCCCcHHHHHHHHHHhCCCeEEEEEEEec--CCCEEEEEEEEecCCCcccchhHHHHHHHHHHHHhccc
Q 019269           39 SDVFLLKLSC-YDRKGLLYDVTAVLCELELTIEKVKISTT--PDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNA  115 (343)
Q Consensus        39 ~~~~~I~V~~-~Dr~GLl~~i~~~L~~~glnI~~A~i~T~--~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~~l~~~  115 (343)
                      .+.+.|+|.. ++.+|.++++...|+.+|+||.  -|.+.  .+|..--.|.|..        ...++..+.|++ +..+
T Consensus       268 ~~~~~i~i~~~~~~~g~~~~if~~La~~~I~Vd--~I~qs~~~~~~~~Isftv~~--------~~~~~a~~~l~~-~~~e  336 (600)
T 3l76_A          268 ADQAKVALLRVPDRPGVASKLFRDIAQQQVDID--LIIQSIHDGNSNDIAFTVVK--------DLLNTAEAVTSA-IAPA  336 (600)
T ss_dssp             CCCEEEEEEEEECSTTHHHHHHHHHHHTTCCCC--CEEBCCCBTTEEEEEEEECG--------GGHHHHHHHHHH-HGGG
T ss_pred             CCEEEEEEeCCCCcccHHHHHHHHHHHcCCCEE--EEEeeccCCCCceEEEEEeH--------HHHHHHHHHHHH-HHHH
Confidence            3445566654 8999999999999999999996  33332  2454444566643        122333333443 2211


Q ss_pred             ccccccccccceeecccCCCCCCchHHHhhhcccCCCCCCCCCCCCCccEEEEEeCCCCCeEEEEEEEC---CcccHHHH
Q 019269          116 MISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQ---DHKGLLYD  192 (343)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~i~V~~~---DrpGLl~~  192 (343)
                      .            .       ..+..                   .....|.++    .+...|.|.+.   .+||+.++
T Consensus       337 l------------~-------~~~~~-------------------~~~~~v~~~----~~~a~VsvVG~gm~~~~Gv~a~  374 (600)
T 3l76_A          337 L------------R-------SYPEA-------------------DQEAEIIVE----KGIAKIAIAGAGMIGRPGIAAK  374 (600)
T ss_dssp             G------------S-------SSTTC-------------------SSSSEEEEE----CSEEEEEEECGGGTTCTTHHHH
T ss_pred             h------------h-------ccccc-------------------cCcceeEec----CCeEEEEEECCCcccCccHHHH
Confidence            1            0       00000                   001234443    35678899886   78999999


Q ss_pred             HHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCCcceee-----ecCCCCceeee
Q 019269          193 IMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLRVTV-----VSRGPDTELLV  267 (343)
Q Consensus       193 i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~~L~~~~~~~~-----~~~~~~~~v~~  267 (343)
                      +..+|++.|+||...  .+  .. . --.|.+..        +..++..+.|.+.+........     .....-+-+..
T Consensus       375 if~aL~~~~Ini~~i--st--Se-~-~Is~vI~~--------~d~~~Av~aLh~~f~~~~t~~~~~~~~~~~~~v~Gia~  440 (600)
T 3l76_A          375 MFKTLADVGVNIEMI--ST--SE-V-KVSCVIDQ--------RDADRAIAALSNAFGVTLSPPKNQTDTSHLPAVRGVAL  440 (600)
T ss_dssp             HHHHHHHTTCCCCEE--EE--CS-S-EEEEEEEG--------GGHHHHHHHHHHHTTCCBCCCCCCCC---CCSCCEEEE
T ss_pred             HHHHHHhCCCcEEEE--ec--CC-C-EEEEEEcH--------HHHHHHHHHHHHhhcccCCCccccccccccCceEEEEe
Confidence            999999999999843  33  22 2 22255542        2234444566666643211000     00000022222


Q ss_pred             e---eeEEEE-eCCCccHHHHHHHHHHhCCceEEEEEee
Q 019269          268 A---NPVELS-GKGRPLVFHDITLALKMLDICIFSAEIG  302 (343)
Q Consensus       268 ~---~~ieV~-~~DrpGLL~~I~~~l~~~gi~I~~AkI~  302 (343)
                      +   ..|.|. .+|+||+.++|-..|++.||||....-+
T Consensus       441 ~~~~a~i~i~~~~~~~g~~~~if~~La~~~I~vDmI~q~  479 (600)
T 3l76_A          441 DQDQAQIAIRHVPDRPGMAAQLFTALAEANISVDMIIQS  479 (600)
T ss_dssp             ECSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCEEEEE
T ss_pred             eCCEEEEEEecCCCCccHHHHHHHHHHHcCCcEEEEEec
Confidence            2   244443 4799999999999999999999766554

>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}

Probab=97.02  E-value=0.16  Score=51.57  Aligned_cols=199  Identities=18%  Similarity=0.218  Sum_probs=117.4

Q ss_pred             CCCEEEEEEEEc---CCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEecCCCcccchhHHHHHHHHHHHHhcc
Q 019269           38 PSDVFLLKLSCY---DRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGN  114 (343)
Q Consensus        38 ~~~~~~I~V~~~---Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~~l~~  114 (343)
                      ..+...|.|++.   +.||+.+++..+|...|+||.  -|++.  ..- -.|.|.        ++..++.-+.|.+.+..
T Consensus       352 ~~~~a~VsvVG~gm~~~~Gv~a~if~aL~~~~Ini~--~istS--e~~-Is~vI~--------~~d~~~Av~aLh~~f~~  418 (600)
T 3l76_A          352 EKGIAKIAIAGAGMIGRPGIAAKMFKTLADVGVNIE--MISTS--EVK-VSCVID--------QRDADRAIAALSNAFGV  418 (600)
T ss_dssp             ECSEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCCC--EEEEC--SSE-EEEEEE--------GGGHHHHHHHHHHHTTC
T ss_pred             cCCeEEEEEECCCcccCccHHHHHHHHHHhCCCcEE--EEecC--CCE-EEEEEc--------HHHHHHHHHHHHHhhcc
Confidence            467789999985   789999999999999999998  33453  222 224443        33344555566666632


Q ss_pred             cccccccccccceeecccCCCCCCchHHHhhhcccCCCCCCCCCCCCCccEEEEEeCCCCCeEEEEEE-ECCcccHHHHH
Q 019269          115 AMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIV-CQDHKGLLYDI  193 (343)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~i~V~-~~DrpGLl~~i  193 (343)
                      ... +       ..       .  .....+               ...=.-|..+    .+.+.|+|. .+|+||+.++|
T Consensus       419 ~~t-~-------~~-------~--~~~~~~---------------~~~v~Gia~~----~~~a~i~i~~~~~~~g~~~~i  462 (600)
T 3l76_A          419 TLS-P-------PK-------N--QTDTSH---------------LPAVRGVALD----QDQAQIAIRHVPDRPGMAAQL  462 (600)
T ss_dssp             CBC-C-------CC-------C--CCC------------------CCSCCEEEEE----CSEEEEEEEEEESSTTHHHHH
T ss_pred             cCC-C-------cc-------c--cccccc---------------cCceEEEEee----CCEEEEEEecCCCCccHHHHH
Confidence            110 0       00       0  000000               0011234443    345666664 59999999999


Q ss_pred             HHHHHhCCeeEEEEEEEEeec--CC--EEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCCcceeeecCCCCceeeee-
Q 019269          194 MRTLKDYNIQVSYGRFSRRQR--GN--CEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLRVTVVSRGPDTELLVA-  268 (343)
Q Consensus       194 ~~~L~~~glnI~~A~i~t~t~--g~--~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~~L~~~~~~~~~~~~~~~~v~~~-  268 (343)
                      .+.|++.|+||-.-.......  .+  ...-+|.+..        +..++..+.|.+ +...+..        .++.+. 
T Consensus       463 f~~La~~~I~vDmI~q~~~~~~~~g~~~~~isftv~~--------~d~~~a~~~l~~-~~~~~~~--------~~v~~~~  525 (600)
T 3l76_A          463 FTALAEANISVDMIIQSQRCRINQGTPCRDIAFMVAE--------GDSSQAEAILQP-LIKDWLD--------AAIVVNK  525 (600)
T ss_dssp             HHHHHHTTCCCCEEEEEEECCCSSSSCEEEEEEEEEH--------HHHHHHHHHHHH-HTTTSTT--------CEEEEEC
T ss_pred             HHHHHHcCCcEEEEEecccccccCCCccceEEEEEeH--------HHHHHHHHHHHH-HHHhcCC--------ceEEEeC
Confidence            999999999996332221111  12  2233466642        123333344433 3332221        112211 


Q ss_pred             --eeEEEEeC---CCccHHHHHHHHHHhCCceEEEEEee
Q 019269          269 --NPVELSGK---GRPLVFHDITLALKMLDICIFSAEIG  302 (343)
Q Consensus       269 --~~ieV~~~---DrpGLL~~I~~~l~~~gi~I~~AkI~  302 (343)
                        ..|.|.+.   .+||+.+++-++|++.||||.....+
T Consensus       526 ~~akVSiVG~GM~~~~Gvaa~~f~aL~~~~Ini~mistS  564 (600)
T 3l76_A          526 AIAKVSIVGSGMIGHPGVAAHFFAALAQENINIEMIATS  564 (600)
T ss_dssp             CEEEEEEECGGGTTCTTHHHHHHHHHHTTTCCCCEEEEC
T ss_pred             CeEEEEEECcccccCccHHHHHHHHHHHCCCceEEEEcC
Confidence              36788874   99999999999999999999887755

>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6

Probab=96.99  E-value=0.0028  Score=53.75  Aligned_cols=64  Identities=14%  Similarity=0.164  Sum_probs=51.7

Q ss_pred             EEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecC-CCEEEEEEEEecCCCcccchhHHHHHHHHHHH
Q 019269           41 VFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTP-DGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT  110 (343)
Q Consensus        41 ~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~-~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~  110 (343)
                      ...|.|...|+||.|++++++|+..|+||.+..+.... .|..--+|.|..      ++..+++|.+.|.+
T Consensus         4 ~~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~------d~~~leql~kQL~K   68 (165)
T 2pc6_A            4 RHIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNG------PDEIVEQITKQLNK   68 (165)
T ss_dssp             EEEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEE------CHHHHHHHHHHHHH
T ss_pred             EEEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEec------cHHHHHHHHHHhcC
Confidence            35789999999999999999999999999999987655 477766777753      24566777777776

>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6

Probab=96.94  E-value=0.0021  Score=54.47  Aligned_cols=66  Identities=5%  Similarity=0.072  Sum_probs=49.4

Q ss_pred             eEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHH
Q 019269          176 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWME  247 (343)
Q Consensus       176 ~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~~  247 (343)
                      ...|+|...|+||+|++|+++|+++|+||.+..+......+...-+|.+..      ++..+++|.+.|.+.
T Consensus         4 ~~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~------d~~~leql~kQL~Kl   69 (165)
T 2pc6_A            4 RHIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNG------PDEIVEQITKQLNKL   69 (165)
T ss_dssp             EEEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEE------CHHHHHHHHHHHHHS
T ss_pred             EEEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEec------cHHHHHHHHHHhcCC
Confidence            357899999999999999999999999999888864222355655566652      245677787777543

>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*

Probab=96.85  E-value=0.028  Score=47.96  Aligned_cols=110  Identities=22%  Similarity=0.241  Sum_probs=70.8

Q ss_pred             CCEEEEEEE-EcCCCcHHHHHHHHHHhCCCeEEEEEEEecC--CCEEEEEEEEecCCCcccchhHHHHHHHHHHHHhccc
Q 019269           39 SDVFLLKLS-CYDRKGLLYDVTAVLCELELTIEKVKISTTP--DGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNA  115 (343)
Q Consensus        39 ~~~~~I~V~-~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~--~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~~l~~~  115 (343)
                      .+.+.|+|. .+|+||.++++...|+.+|+||.---..+..  +|..--.|.+..        ...++..+.|++ +..+
T Consensus        13 ~~~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~~--------~d~~~a~~~l~~-~~~~   83 (178)
T 2dtj_A           13 KSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPR--------SDGRRAMEILKK-LQVQ   83 (178)
T ss_dssp             CSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEEH--------HHHHHHHHHHHT-TTTT
T ss_pred             CCEEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEcc--------ccHHHHHHHHHH-HHHh
Confidence            466778884 5999999999999999999999843333221  332222365542        222333333433 2111


Q ss_pred             ccccccccccceeecccCCCCCCchHHHhhhcccCCCCCCCCCCCCCccEEEEEeCCCCCeEEEEEEEC---CcccHHHH
Q 019269          116 MISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQ---DHKGLLYD  192 (343)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~i~V~~~---DrpGLl~~  192 (343)
                      .                      .                       ...+.+.    .+...|.|.|.   ++||++++
T Consensus        84 ~----------------------~-----------------------~~~v~~~----~~~a~VsvVG~gm~~~~Gv~ar  114 (178)
T 2dtj_A           84 G----------------------N-----------------------WTNVLYD----DQVGKVSLVGAGMKSHPGVTAE  114 (178)
T ss_dssp             T----------------------T-----------------------CSEEEEE----SCEEEEEEEEECCTTCHHHHHH
T ss_pred             c----------------------C-----------------------CCeEEEe----CCeEEEEEEcCCcccCccHHHH
Confidence            0                      0                       0123332    34678888886   89999999


Q ss_pred             HHHHHHhCCeeEEE
Q 019269          193 IMRTLKDYNIQVSY  206 (343)
Q Consensus       193 i~~~L~~~glnI~~  206 (343)
                      +.++|++.|+||..
T Consensus       115 if~aLa~~~InI~~  128 (178)
T 2dtj_A          115 FMEALRDVNVNIEL  128 (178)
T ss_dssp             HHHHHHHTTCCCCE
T ss_pred             HHHHHHHCCCCEEE
Confidence            99999999999985

>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A

Probab=96.80  E-value=0.026  Score=47.51  Aligned_cols=106  Identities=16%  Similarity=0.198  Sum_probs=70.9

Q ss_pred             CCEEEEEEEE-cCCCcHHHHHHHHHHhCCCeEEEEEEEecC----CCEEEEEEEEecCCCcccchhHHHHHHHHHHHHhc
Q 019269           39 SDVFLLKLSC-YDRKGLLYDVTAVLCELELTIEKVKISTTP----DGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILG  113 (343)
Q Consensus        39 ~~~~~I~V~~-~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~----~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~~l~  113 (343)
                      .+...|+|.+ +|+||.++++..+|+..|+||.-  |.+..    +|..--.|.|...        ..++..+.|.+.. 
T Consensus        14 ~~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~--I~q~~~~~~~g~~~isf~V~~~--------d~~~a~~~L~~~~-   82 (167)
T 2dt9_A           14 LDHAQIGLIGIPDQPGIAAKVFQALAERGIAVDM--IIQGVPGHDPSRQQMAFTVKKD--------FAQEALEALEPVL-   82 (167)
T ss_dssp             CSEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSC--EEBCCCCSCTTEEEEEEEEEGG--------GHHHHHHHHHHHH-
T ss_pred             CCEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEE--EEcCCCCCCCCceEEEEEEehH--------HHHHHHHHHHHHH-
Confidence            5667888887 89999999999999999999983  33321    2344345666531        1223333343311 


Q ss_pred             ccccccccccccceeecccCCCCCCchHHHhhhcccCCCCCCCCCCCCCccEEEEEeCCCCCeEEEEEEECC---cccHH
Q 019269          114 NAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQD---HKGLL  190 (343)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~i~V~~~D---rpGLl  190 (343)
                      .+.                                            . - .+.++    .+...+.|.|.+   +||++
T Consensus        83 ~~~--------------------------------------------~-~-~v~~~----~~~a~vsvVG~gm~~~~Gv~  112 (167)
T 2dt9_A           83 AEI--------------------------------------------G-G-EAILR----PDIAKVSIVGVGLASTPEVP  112 (167)
T ss_dssp             HHH--------------------------------------------C-C-EEEEE----CSEEEEEEEESSGGGSTHHH
T ss_pred             HHh--------------------------------------------C-C-cEEEe----CCEEEEEEECCCcccCcCHH
Confidence            100                                            0 0 22222    356788999876   99999


Q ss_pred             HHHHHHHHhCCeeEE
Q 019269          191 YDIMRTLKDYNIQVS  205 (343)
Q Consensus       191 ~~i~~~L~~~glnI~  205 (343)
                      +++..+|++.|+||.
T Consensus       113 a~~f~aL~~~~InI~  127 (167)
T 2dt9_A          113 AKMFQAVASTGANIE  127 (167)
T ss_dssp             HHHHHHHHHTTCCCC
T ss_pred             HHHHHHHHHCCCCEE
Confidence            999999999999996

>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}

Probab=96.74  E-value=0.19  Score=42.90  Aligned_cols=112  Identities=16%  Similarity=0.178  Sum_probs=71.2

Q ss_pred             CCEEEEEEEE-cCCCcHHHHHHHHHHhCCCeEEEEEEEecC--CCEEEEEEEEecCCCcccchhHHHHHHHHHHHHhccc
Q 019269           39 SDVFLLKLSC-YDRKGLLYDVTAVLCELELTIEKVKISTTP--DGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNA  115 (343)
Q Consensus        39 ~~~~~I~V~~-~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~--~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~~l~~~  115 (343)
                      .+...|+|.+ +|+||.++++...|+.+|+||.--......  +|..--.|.|...+        .++..+.|++ +..+
T Consensus        14 ~~~~~Iti~~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~~~~--------~~~a~~~L~~-~~~e   84 (181)
T 3s1t_A           14 RSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDV--------GPAAVEKLDS-LRNE   84 (181)
T ss_dssp             CSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEETTT--------HHHHHHHHHH-THHH
T ss_pred             CCEEEEEEecCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEehhH--------HHHHHHHHHH-HHHh
Confidence            4556677754 899999999999999999999732211122  45554567775421        1233333333 1110


Q ss_pred             ccccccccccceeecccCCCCCCchHHHhhhcccCCCCCCCCCCCCCccEEEEEeCCCCCeEEEEEEEC---CcccHHHH
Q 019269          116 MISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQ---DHKGLLYD  192 (343)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~i~V~~~---DrpGLl~~  192 (343)
                      .                                             ....|.++    .+...|.|.|.   ++||+.++
T Consensus        85 l---------------------------------------------~~~~v~~~----~~va~VsvVG~gm~~~~Gvaa~  115 (181)
T 3s1t_A           85 I---------------------------------------------GFSQLLYD----DHIGKVSLIGAGMRSHPGVTAT  115 (181)
T ss_dssp             H---------------------------------------------CCSEEEEE----SCEEEEEEEEECCTTCHHHHHH
T ss_pred             c---------------------------------------------CcceEEEe----CCEEEEEEEecccccCchHHHH
Confidence            0                                             00123332    24567888775   89999999


Q ss_pred             HHHHHHhCCeeEEEEE
Q 019269          193 IMRTLKDYNIQVSYGR  208 (343)
Q Consensus       193 i~~~L~~~glnI~~A~  208 (343)
                      +.++|++.|+||....
T Consensus       116 ~f~aLa~~~InI~~Is  131 (181)
T 3s1t_A          116 FCEALAAVGVNIELIS  131 (181)
T ss_dssp             HHHHHHHTTCCCCEEE
T ss_pred             HHHHHHHCCCcEEEEE
Confidence            9999999999998443

>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}

Probab=96.53  E-value=0.031  Score=47.89  Aligned_cols=113  Identities=17%  Similarity=0.114  Sum_probs=68.7

Q ss_pred             CeEEEEEE-ECCcccHHHHHHHHHHhCCeeEEEEEEEEeec--CCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCC
Q 019269          175 GHTLVQIV-CQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQR--GNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQP  251 (343)
Q Consensus       175 ~~t~i~V~-~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~--g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~~L~~~  251 (343)
                      +.+.|+|. .+|+||.+++|..+|++.|+||..-.-.. ..  .+...-+|.+..+.     .++..++-+.+.+.+. .
T Consensus        15 ~~~~Iti~~~~~~~G~~a~If~~La~~~I~vd~I~q~~-s~~~~g~~~isftv~~~~-----~~~a~~~L~~~~~el~-~   87 (181)
T 3s1t_A           15 SEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNV-SKVEDGKTDITFTCSRDV-----GPAAVEKLDSLRNEIG-F   87 (181)
T ss_dssp             SEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCCEEECC-CCTTTCEEEEEEEEETTT-----HHHHHHHHHHTHHHHC-C
T ss_pred             CEEEEEEecCCCCcCHHHHHHHHHHHcCCcEEEEEecC-CcccCCccEEEEEEehhH-----HHHHHHHHHHHHHhcC-c
Confidence            34555553 58999999999999999999997332111 11  34444557776321     1122222222222231 1


Q ss_pred             cceeeecCCCCceeeeeeeEEEEeC---CCccHHHHHHHHHHhCCceEEEEEee
Q 019269          252 LRVTVVSRGPDTELLVANPVELSGK---GRPLVFHDITLALKMLDICIFSAEIG  302 (343)
Q Consensus       252 ~~~~~~~~~~~~~v~~~~~ieV~~~---DrpGLL~~I~~~l~~~gi~I~~AkI~  302 (343)
                      ..+.. ..    .+   ..+.|.|.   ++||+.+++.++|++.||||.....+
T Consensus        88 ~~v~~-~~----~v---a~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~IstS  133 (181)
T 3s1t_A           88 SQLLY-DD----HI---GKVSLIGAGMRSHPGVTATFCEALAAVGVNIELISTS  133 (181)
T ss_dssp             SEEEE-ES----CE---EEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEEEE
T ss_pred             ceEEE-eC----CE---EEEEEEecccccCchHHHHHHHHHHHCCCcEEEEEcC
Confidence            11111 01    11   25677766   89999999999999999999887643

>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6

Probab=96.45  E-value=0.014  Score=50.59  Aligned_cols=66  Identities=12%  Similarity=0.233  Sum_probs=50.7

Q ss_pred             CEEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCC-CEEEEEEEEecCCCcccchhHHHHHHHHHHHH
Q 019269           40 DVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPD-GKVMDLFFVTDTRELLHTRKRKEDTYEHLKTI  111 (343)
Q Consensus        40 ~~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~-g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~~  111 (343)
                      ....|+|...|+||.|++++++|+..|+||.+-.+..+.+ |..--++.|...      +..+++|.+.|.+.
T Consensus        28 m~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~------e~~ieqL~kQL~KL   94 (193)
T 2fgc_A           28 REHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGD------DKTIEQIEKQAYKL   94 (193)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEEC------TTHHHHHHHHHTTS
T ss_pred             eEEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECC------HHHHHHHHHHhcCc
Confidence            3568999999999999999999999999999877764444 666666777532      33466777777663

>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6

Probab=96.41  E-value=0.01  Score=51.39  Aligned_cols=65  Identities=8%  Similarity=0.194  Sum_probs=46.8

Q ss_pred             eEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHHHH
Q 019269          176 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWM  246 (343)
Q Consensus       176 ~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~  246 (343)
                      ...|+|...|+||.|++|+++|++.|+||.+..+......+...-++.+..+      +...++|.+.|.+
T Consensus        29 ~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~------e~~ieqL~kQL~K   93 (193)
T 2fgc_A           29 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGD------DKTIEQIEKQAYK   93 (193)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEEC------TTHHHHHHHHHTT
T ss_pred             EEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECC------HHHHHHHHHHhcC
Confidence            4689999999999999999999999999998777531233455545566522      2245667666543

>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}

Probab=96.37  E-value=0.0042  Score=52.24  Aligned_cols=36  Identities=22%  Similarity=0.177  Sum_probs=33.3

Q ss_pred             eEEEEeCCCccHHHHHHHHHHhCCceEEEEEeeccccC
Q 019269          270 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIG  307 (343)
Q Consensus       270 ~ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~~~T~g  307 (343)
                      .|+|.|.||+|+|++|+.+|+++++||..+.+.  +.|
T Consensus         2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~--~~g   37 (190)
T 2jhe_A            2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEID--PIG   37 (190)
T ss_dssp             EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEE--TTT
T ss_pred             EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEe--cCC
Confidence            478999999999999999999999999999998  553

>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X

Probab=96.36  E-value=0.028  Score=49.03  Aligned_cols=115  Identities=17%  Similarity=0.119  Sum_probs=68.9

Q ss_pred             CCeEEEEEE-ECCcccHHHHHHHHHHhCCeeEEEEEEEEee-cCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCC
Q 019269          174 PGHTLVQIV-CQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQ-RGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQP  251 (343)
Q Consensus       174 ~~~t~i~V~-~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t-~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~~L~~~  251 (343)
                      .+.+.|+|. .+|+||+.++|...|++.|+||-.-.-..+. ..+...-.|.+..+     +.++...+.+.+...+...
T Consensus        33 ~~~a~Iti~g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~~~-----d~~~~~~~l~~~~~~~~~~  107 (200)
T 4go7_X           33 RSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRD-----VGPAAVEKLDSLRNEIGFS  107 (200)
T ss_dssp             CSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEEGG-----GHHHHHHHHHTTHHHHCCS
T ss_pred             CCEEEEEEecCCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecchh-----hHHHHHHHHHHHHhhhcee
Confidence            356777776 5999999999999999999999833211101 12244445666521     1112222222222333211


Q ss_pred             cceeeecCCCCceeeeeeeEEEEeC---CCccHHHHHHHHHHhCCceEEEEEee
Q 019269          252 LRVTVVSRGPDTELLVANPVELSGK---GRPLVFHDITLALKMLDICIFSAEIG  302 (343)
Q Consensus       252 ~~~~~~~~~~~~~v~~~~~ieV~~~---DrpGLL~~I~~~l~~~gi~I~~AkI~  302 (343)
                       .+.. .    ..+   ..+.|.+.   .+||+.+++-.+|++.||||.....+
T Consensus       108 -~v~~-~----~~i---akVSvVG~GM~~~~GVaak~F~aLa~~~INI~mIstS  152 (200)
T 4go7_X          108 -QLLY-D----DHI---GKVSLIGAGMRSHPGVTATFCEALAAVGVNIELISTS  152 (200)
T ss_dssp             -EEEE-E----CCE---EEEEEEEESCTTCHHHHHHHHHHHHHTTCCCCEEEEC
T ss_pred             -eEEE-e----cCe---eeeeeeccccccCCCcHHHHHHHHHHCCCCEEEEEcc
Confidence             1100 0    111   24556554   89999999999999999999987644

>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12

Probab=96.16  E-value=0.013  Score=51.44  Aligned_cols=62  Identities=23%  Similarity=0.269  Sum_probs=44.1

Q ss_pred             EEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecC----CCEEEEEEEEecCCCcccchhHHHHHHHHHHH
Q 019269           41 VFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTP----DGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT  110 (343)
Q Consensus        41 ~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~----~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~  110 (343)
                      ...|.|.+.||||+|++++.+|++++.||...+..+..    +|.+.-.+.+.+.        .++++-+.|++
T Consensus         4 ~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~IEV~d~--------~Le~LL~kLrk   69 (223)
T 1y7p_A            4 LRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEGG--------DFEKILERVKT   69 (223)
T ss_dssp             CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEECSS--------CHHHHHHHHHT
T ss_pred             eEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEEEEECCC--------CHHHHHHHHhC
Confidence            45789999999999999999999999999999998866    6776655555431        34555555554

>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X

Probab=96.02  E-value=0.1  Score=45.41  Aligned_cols=109  Identities=15%  Similarity=0.192  Sum_probs=69.2

Q ss_pred             CCCEEEEEEEE-cCCCcHHHHHHHHHHhCCCeEEEEEEEec----CCCEEEEEEEEecCCCcccchhHHHHHHHHHHHHh
Q 019269           38 PSDVFLLKLSC-YDRKGLLYDVTAVLCELELTIEKVKISTT----PDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTIL  112 (343)
Q Consensus        38 ~~~~~~I~V~~-~Dr~GLl~~i~~~L~~~glnI~~A~i~T~----~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~~l  112 (343)
                      ..+...|+|.+ +|+||+.+++.+.|++.|+||-  -|.+.    .++.....|.+...        ..++....|.+..
T Consensus        32 ~~~~a~Iti~g~~~~pG~aa~IF~~La~~~InVD--mI~Qs~s~~~~~~~~~sftv~~~--------d~~~~~~~l~~~~  101 (200)
T 4go7_X           32 DRSEAKVTIVGLPDIPGYAAKVFRAVADADVNID--MVLQNVSKVEDGKTDITFTCSRD--------VGPAAVEKLDSLR  101 (200)
T ss_dssp             ECSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCC--CEECCCCC--CCEEEEEEEEEGG--------GHHHHHHHHHTTH
T ss_pred             cCCEEEEEEecCCCCccHHHHHHHHHHHhCcceE--EEeeccccccccceEEEEecchh--------hHHHHHHHHHHHH
Confidence            45567788875 9999999999999999999997  34332    23455445766531        1223322232211


Q ss_pred             cccccccccccccceeecccCCCCCCchHHHhhhcccCCCCCCCCCCCCCccEEEEEeCCCCCeEEEEEEE---CCcccH
Q 019269          113 GNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVC---QDHKGL  189 (343)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~i~V~~---~DrpGL  189 (343)
                       .+.                                             ....+.++    .+...|.|.+   +.+||+
T Consensus       102 -~~~---------------------------------------------~~~~v~~~----~~iakVSvVG~GM~~~~GV  131 (200)
T 4go7_X          102 -NEI---------------------------------------------GFSQLLYD----DHIGKVSLIGAGMRSHPGV  131 (200)
T ss_dssp             -HHH---------------------------------------------CCSEEEEE----CCEEEEEEEEESCTTCHHH
T ss_pred             -hhh---------------------------------------------ceeeEEEe----cCeeeeeeeccccccCCCc
Confidence             000                                             00122222    2344566655   788999


Q ss_pred             HHHHHHHHHhCCeeEEE
Q 019269          190 LYDIMRTLKDYNIQVSY  206 (343)
Q Consensus       190 l~~i~~~L~~~glnI~~  206 (343)
                      .+++..+|++.|+||..
T Consensus       132 aak~F~aLa~~~INI~m  148 (200)
T 4go7_X          132 TATFCEALAAVGVNIEL  148 (200)
T ss_dssp             HHHHHHHHHHTTCCCCE
T ss_pred             HHHHHHHHHHCCCCEEE
Confidence            99999999999999993

>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A

Probab=95.97  E-value=0.093  Score=50.84  Aligned_cols=108  Identities=19%  Similarity=0.155  Sum_probs=69.2

Q ss_pred             CeEEEEEE-ECCcccHHHHHHHHHHhCCeeEEEEEEEEeec--CCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCC
Q 019269          175 GHTLVQIV-CQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQR--GNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQP  251 (343)
Q Consensus       175 ~~t~i~V~-~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~--g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~~L~~~  251 (343)
                      +.+.|+|. .+|+||.+++|.+.|+++|+||......+ ..  .+...-.|.+..+     +.++   ..+.|.+ +..+
T Consensus       263 ~~~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q~~-s~~~~g~~~isf~v~~~-----~~~~---a~~~l~~-~~~~  332 (421)
T 3ab4_A          263 SEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNV-FSVEDGTTDITFTCPRS-----DGRR---AMEILKK-LQVQ  332 (421)
T ss_dssp             SEEEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEECC-CC--CCEEEEEEEEETT-----THHH---HHHHHHH-HHTT
T ss_pred             CEEEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEccC-ccccCCcceEEEEEech-----hHHH---HHHHHHH-HHHH
Confidence            45678887 58999999999999999999998543222 21  2333444666531     1222   2233322 2222


Q ss_pred             cceeeecCCCCceeeee---eeEEEEeC---CCccHHHHHHHHHHhCCceEEEEE
Q 019269          252 LRVTVVSRGPDTELLVA---NPVELSGK---GRPLVFHDITLALKMLDICIFSAE  300 (343)
Q Consensus       252 ~~~~~~~~~~~~~v~~~---~~ieV~~~---DrpGLL~~I~~~l~~~gi~I~~Ak  300 (343)
                      +..        ..+.+.   ..+.|.+.   ++||+++++..+|.+.||||....
T Consensus       333 ~~~--------~~v~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is  379 (421)
T 3ab4_A          333 GNW--------TNVLYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELIS  379 (421)
T ss_dssp             TTC--------SEEEEECCEEEEEEECGGGTSCTTHHHHHHHHHHHTTCCCCEEE
T ss_pred             cCC--------ceEEEeCCeEEEEEEccCcccCccHHHHHHHHHHHCCCCEEEEE
Confidence            221        111111   26788876   899999999999999999998654

>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12

Probab=95.91  E-value=0.011  Score=52.07  Aligned_cols=39  Identities=15%  Similarity=0.031  Sum_probs=30.2

Q ss_pred             eEEEEeCCCccHHHHHHHHHHhCCceEEEEEeeccccCc
Q 019269          270 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGD  308 (343)
Q Consensus       270 ~ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~~~T~g~  308 (343)
                      .|.|.+.||||+|++|+.+|+++++||...+..++..|+
T Consensus         6 tL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~   44 (223)
T 1y7p_A            6 GLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGE   44 (223)
T ss_dssp             EEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSST
T ss_pred             EEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCC
Confidence            689999999999999999999999999999999333333

>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A

Probab=95.50  E-value=1.2  Score=43.03  Aligned_cols=109  Identities=22%  Similarity=0.237  Sum_probs=71.0

Q ss_pred             CCEEEEEEE-EcCCCcHHHHHHHHHHhCCCeEEEEEEEecC--CCEEEEEEEEecCCCcccchhHHHHHHHHHHHHhccc
Q 019269           39 SDVFLLKLS-CYDRKGLLYDVTAVLCELELTIEKVKISTTP--DGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNA  115 (343)
Q Consensus        39 ~~~~~I~V~-~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~--~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~~l~~~  115 (343)
                      .+.+.|+|. .+|+||.++++...|+.+|+||.--...+..  +|..--.|.|...     +.   ++..+.|++ +..+
T Consensus       262 ~~~~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v~~~-----~~---~~a~~~l~~-~~~~  332 (421)
T 3ab4_A          262 KSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTCPRS-----DG---RRAMEILKK-LQVQ  332 (421)
T ss_dssp             CSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEECCCC--CCEEEEEEEEETT-----TH---HHHHHHHHH-HHTT
T ss_pred             CCEEEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEccCccccCCcceEEEEEech-----hH---HHHHHHHHH-HHHH
Confidence            345678887 5999999999999999999999843322322  3544445766542     11   222333433 2111


Q ss_pred             ccccccccccceeecccCCCCCCchHHHhhhcccCCCCCCCCCCCCCccEEEEEeCCCCCeEEEEEEEC---CcccHHHH
Q 019269          116 MISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQ---DHKGLLYD  192 (343)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~i~V~~~---DrpGLl~~  192 (343)
                      .                      .                       ...|.++    .+...+.|.+.   +.||++++
T Consensus       333 ~----------------------~-----------------------~~~v~~~----~~~a~vsvVG~gm~~~~Gv~a~  363 (421)
T 3ab4_A          333 G----------------------N-----------------------WTNVLYD----DQVGKVSLVGAGMKSHPGVTAE  363 (421)
T ss_dssp             T----------------------T-----------------------CSEEEEE----CCEEEEEEECGGGTSCTTHHHH
T ss_pred             c----------------------C-----------------------CceEEEe----CCeEEEEEEccCcccCccHHHH
Confidence            0                      0                       0123332    34678888885   78999999


Q ss_pred             HHHHHHhCCeeEE
Q 019269          193 IMRTLKDYNIQVS  205 (343)
Q Consensus       193 i~~~L~~~glnI~  205 (343)
                      +..+|++.|+||.
T Consensus       364 ~f~aL~~~~InI~  376 (421)
T 3ab4_A          364 FMEALRDVNVNIE  376 (421)
T ss_dssp             HHHHHHHTTCCCC
T ss_pred             HHHHHHHCCCCEE
Confidence            9999999999999

>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}

Probab=95.30  E-value=0.064  Score=44.75  Aligned_cols=59  Identities=15%  Similarity=0.303  Sum_probs=43.1

Q ss_pred             EEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEecCCCcccchhHHHHHHHHHHH
Q 019269           43 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT  110 (343)
Q Consensus        43 ~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~  110 (343)
                      .|.|.|.||+|++++|+.+|+.+++||....+.+.  |.    +++.-+.   .+.+.+..+...+..
T Consensus         2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~--g~----i~~~~~~---~~~~~~~~L~~~l~~   60 (190)
T 2jhe_A            2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPI--GR----IYLNFAE---LEFESFSSLMAEIRR   60 (190)
T ss_dssp             EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETT--TE----EEEEECC---CCHHHHHHHHHHHHH
T ss_pred             EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecC--CE----EEEEEEe---CCHHHHHHHHHHHHc
Confidence            58899999999999999999999999999998663  64    2232221   234445666665555

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=93.48  E-value=0.26  Score=49.13  Aligned_cols=52  Identities=17%  Similarity=0.149  Sum_probs=43.1

Q ss_pred             CCeEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEe
Q 019269          174 PGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ  225 (343)
Q Consensus       174 ~~~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~  225 (343)
                      ..+..|.+.-+|+||.+..|+..|.++|+||.+.++.....|+.++-.+.++
T Consensus       452 ~~~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~vd  503 (529)
T 1ygy_A          452 AQGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLD  503 (529)
T ss_dssp             SCSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEES
T ss_pred             CCccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEEEC
Confidence            4567888899999999999999999999999999998544567777555554

>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}

Probab=92.56  E-value=0.58  Score=45.62  Aligned_cols=104  Identities=13%  Similarity=0.113  Sum_probs=68.5

Q ss_pred             CeEEEEEEE---CCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCC
Q 019269          175 GHTLVQIVC---QDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQP  251 (343)
Q Consensus       175 ~~t~i~V~~---~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~~L~~~  251 (343)
                      +.+.|+|.+   .+.||++++|..+|+++|+||..  |.+ .. .  .-+|.+..+..  .  +..+.+.+.|...+.. 
T Consensus       297 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~vd~--i~~-~~-~--~is~~V~~~d~--~--~~~~~~~~el~~~~~~-  365 (446)
T 3tvi_A          297 NFTVIAIEKALLNSEVGFCRKILSILEMYGVSFEH--MPS-GV-D--SVSLVIEDCKL--D--GKCDKIIEEIKKQCNP-  365 (446)
T ss_dssp             EEEEEEEECTTGGGSTTHHHHHHHHHHTTTCCEEE--BCE-ET-T--EEEEEEEHHHH--T--TTHHHHHHHHHHHSCC-
T ss_pred             CEEEEEEEecCCCccHHHHHHHHHHHHHcCCcEEE--Eec-CC-C--EEEEEEecchH--H--HHHHHHHHHHHHhcCC-
Confidence            456788886   68999999999999999999983  332 12 1  22366652111  0  0223444444443321 


Q ss_pred             cceeeecCCCCceeeee---eeEEEEeC---CCccHHHHHHHHHHhCCceEEEEE
Q 019269          252 LRVTVVSRGPDTELLVA---NPVELSGK---GRPLVFHDITLALKMLDICIFSAE  300 (343)
Q Consensus       252 ~~~~~~~~~~~~~v~~~---~~ieV~~~---DrpGLL~~I~~~l~~~gi~I~~Ak  300 (343)
                                 .++.+.   ..|.|.|.   .+||+.+++..+|++.||||....
T Consensus       366 -----------~~v~v~~~vA~VSvVG~gM~~~~Gvaarif~aLa~~~InI~mIs  409 (446)
T 3tvi_A          366 -----------DSIEIHPNMALVATVGTGMAKTKGIANKIFTALSKENVNIRMID  409 (446)
T ss_dssp             -----------SEEEEEEEEEEEEEECGGGSSCTTHHHHHHHHHHHTTCCEEEEE
T ss_pred             -----------CcEEEeCCeEEEEEECCCccCChhHHHHHHHHHHHCCCCEEEEE
Confidence                       111111   36788876   699999999999999999998865

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=92.00  E-value=0.51  Score=46.98  Aligned_cols=62  Identities=16%  Similarity=0.167  Sum_probs=46.6

Q ss_pred             eeEEEEeCCCccHHHHHHHHHHhCCceEEEEEeeccccCceEeeeeEEEEEcCCCCCCCchHHHHHHHH
Q 019269          269 NPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWK  337 (343)
Q Consensus       269 ~~ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~~~T~g~~~~dv~~F~v~~~~g~~l~~~~~~~~l~~  337 (343)
                      +.+-+.-.|+||.+..|+..|.++||||.+.++.+...|+.+.=+  +.+    ..+++++ ..++|++
T Consensus       455 ~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~--i~v----d~~~~~~-~l~~l~~  516 (529)
T 1ygy_A          455 INLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATIL--LRL----DQDVPDD-VRTAIAA  516 (529)
T ss_dssp             EEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEE--EEE----SSCCCHH-HHHHHHH
T ss_pred             cEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEE--EEE----CCCCCHH-HHHHHhc
Confidence            367788899999999999999999999999999965666665433  322    2345555 5677765

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=91.90  E-value=0.46  Score=45.73  Aligned_cols=49  Identities=6%  Similarity=0.186  Sum_probs=41.7

Q ss_pred             CeEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEe
Q 019269          175 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ  225 (343)
Q Consensus       175 ~~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~  225 (343)
                      +...|.+.-.|+||.+..|+.+|.++|+||...+..  +.|+.+.-++.++
T Consensus       330 ~~~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~--r~g~~A~~vidvD  378 (404)
T 1sc6_A          330 GGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQ--TSAQMGYVVIDIE  378 (404)
T ss_dssp             SSEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEE--ECSSEEEEEEEEE
T ss_pred             CcceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhcc--CCCCEEEEEEEcC
Confidence            355688899999999999999999999999998887  5788887666665

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=91.77  E-value=1.1  Score=43.13  Aligned_cols=50  Identities=14%  Similarity=0.080  Sum_probs=43.9

Q ss_pred             CEEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEec
Q 019269           40 DVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTD   90 (343)
Q Consensus        40 ~~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~   90 (343)
                      +...|.+.-.|+||.+++++.+|.++|+||..-...+ .++.++-++.+..
T Consensus       330 ~~~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r-~g~~A~~vidvD~  379 (404)
T 1sc6_A          330 GGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQT-SAQMGYVVIDIEA  379 (404)
T ss_dssp             SSEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEE-CSSEEEEEEEEEC
T ss_pred             CcceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccC-CCCEEEEEEEcCC
Confidence            4557888999999999999999999999999999988 7888877777754

>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}

Probab=91.72  E-value=6.8  Score=38.04  Aligned_cols=105  Identities=16%  Similarity=0.225  Sum_probs=65.8

Q ss_pred             EEEEEEEE---cCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEecCCCcccchhHHHHHHHHHHHHhccccc
Q 019269           41 VFLLKLSC---YDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMI  117 (343)
Q Consensus        41 ~~~I~V~~---~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~~l~~~~~  117 (343)
                      .+.|+|.+   .+.||..+++..+|+.+|+||.  -|.+..+.   -.|.|...+-.    .....+.+.|...+.    
T Consensus       298 ~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~vd--~i~~~~~~---is~~V~~~d~~----~~~~~~~~el~~~~~----  364 (446)
T 3tvi_A          298 FTVIAIEKALLNSEVGFCRKILSILEMYGVSFE--HMPSGVDS---VSLVIEDCKLD----GKCDKIIEEIKKQCN----  364 (446)
T ss_dssp             EEEEEEECTTGGGSTTHHHHHHHHHHTTTCCEE--EBCEETTE---EEEEEEHHHHT----TTHHHHHHHHHHHSC----
T ss_pred             EEEEEEEecCCCccHHHHHHHHHHHHHcCCcEE--EEecCCCE---EEEEEecchHH----HHHHHHHHHHHHhcC----
Confidence            45677775   6899999999999999999997  33343232   23555431000    012222222222111    


Q ss_pred             ccccccccceeecccCCCCCCchHHHhhhcccCCCCCCCCCCCCCccEEEEEeCCCCCeEEEEEEEC---CcccHHHHHH
Q 019269          118 SCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQ---DHKGLLYDIM  194 (343)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~i~V~~~---DrpGLl~~i~  194 (343)
                                                                   ...|.++.    +...|.|.|.   ..||+.+++.
T Consensus       365 ---------------------------------------------~~~v~v~~----~vA~VSvVG~gM~~~~Gvaarif  395 (446)
T 3tvi_A          365 ---------------------------------------------PDSIEIHP----NMALVATVGTGMAKTKGIANKIF  395 (446)
T ss_dssp             ---------------------------------------------CSEEEEEE----EEEEEEEECGGGSSCTTHHHHHH
T ss_pred             ---------------------------------------------CCcEEEeC----CeEEEEEECCCccCChhHHHHHH
Confidence                                                         11233332    3568888875   5899999999


Q ss_pred             HHHHhCCeeEEEE
Q 019269          195 RTLKDYNIQVSYG  207 (343)
Q Consensus       195 ~~L~~~glnI~~A  207 (343)
                      .+|++.|+||...
T Consensus       396 ~aLa~~~InI~mI  408 (446)
T 3tvi_A          396 TALSKENVNIRMI  408 (446)
T ss_dssp             HHHHHTTCCEEEE
T ss_pred             HHHHHCCCCEEEE
Confidence            9999999999843

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=91.62  E-value=1.2  Score=43.00  Aligned_cols=51  Identities=12%  Similarity=0.046  Sum_probs=42.3

Q ss_pred             CCCEEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEe
Q 019269           38 PSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVT   89 (343)
Q Consensus        38 ~~~~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~   89 (343)
                      .++...|.+.-+|.||.+.+|..+|+++|+||..-...| .+++++-+.-|.
T Consensus       340 ~~~~~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~~-~~~~~y~~~d~~  390 (416)
T 3k5p_A          340 RPTGTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQT-DGEVGYLVMEAD  390 (416)
T ss_dssp             CSSSEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEEE-CSSCEEEEEEEC
T ss_pred             CCCceEEEEEecCCccHHHHHHHHHHHcCCCHHHHhccC-CCceEEEEEEec
Confidence            356789999999999999999999999999999766666 577875555553

>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}

Probab=91.14  E-value=0.41  Score=43.88  Aligned_cols=52  Identities=10%  Similarity=-0.074  Sum_probs=38.7

Q ss_pred             eEEEEeCCCccHHHHHHHHHHhCCceEEEEEeeccccCceEeeeeEEEEEcCCCCC
Q 019269          270 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLS  325 (343)
Q Consensus       270 ~ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~~~T~g~~~~dv~~F~v~~~~g~~  325 (343)
                      .|-+..+|+||-|+++-..|+.+|||+.+.... |+.+..-+  |.|||. -+|..
T Consensus       202 sl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESR-P~~~~~~~--Y~FfvD-~eg~~  253 (283)
T 2qmx_A          202 SIVFALPNEQGSLFRALATFALRGIDLTKIESR-PSRKKAFE--YLFYAD-FIGHR  253 (283)
T ss_dssp             EEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEE-ECSSSTTE--EEEEEE-EESCT
T ss_pred             EEEEEcCCCCchHHHHHHHHHHcCCCeeEEEee-EcCCCCcc--eEEEEE-EecCC
Confidence            444455699999999999999999999998876 44444433  448884 55654

>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}

Probab=90.15  E-value=0.89  Score=41.57  Aligned_cols=64  Identities=17%  Similarity=0.216  Sum_probs=45.4

Q ss_pred             CeEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCE-EEEEEEEecCCCCCCChHHHHHHHHHHH
Q 019269          175 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNC-EIDLFIMQADGKKIVDPSKQNGLSSRLW  245 (343)
Q Consensus       175 ~~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~-~~d~F~v~~~g~~i~~~~~~~~l~~~L~  245 (343)
                      ..|.|.+..+|+||-|+++-+.|+.+|+|+.  +|.++...+. ..-.|+|+-+|.. .++    .++++|.
T Consensus       199 ~ktsl~f~~~~~pGaL~~~L~~Fa~~gINLt--kIESRP~~~~~~~Y~FfvD~eg~~-~d~----~v~~aL~  263 (283)
T 2qmx_A          199 QKTSIVFALPNEQGSLFRALATFALRGIDLT--KIESRPSRKKAFEYLFYADFIGHR-EDQ----NVHNALE  263 (283)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHTTTCCEE--EEEEEECSSSTTEEEEEEEEESCT-TSH----HHHHHHH
T ss_pred             ceEEEEEEcCCCCchHHHHHHHHHHcCCCee--EEEeeEcCCCCcceEEEEEEecCC-CcH----HHHHHHH
Confidence            3577777778999999999999999999999  7766644333 3345888855543 333    4555553

>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}

Probab=90.12  E-value=0.56  Score=43.57  Aligned_cols=52  Identities=15%  Similarity=0.074  Sum_probs=38.5

Q ss_pred             eEEEEeC-CCccHHHHHHHHHHhCCceEEEEEeeccccCceEeeeeEEEEEcCCCCC
Q 019269          270 PVELSGK-GRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLS  325 (343)
Q Consensus       270 ~ieV~~~-DrpGLL~~I~~~l~~~gi~I~~AkI~~~T~g~~~~dv~~F~v~~~~g~~  325 (343)
                      .|-+..+ |+||-|+++-..|+.+|||+.+..-. |+.+..-+  |.|||. -+|..
T Consensus       203 Sl~f~~~~~~pGaL~~~L~~Fa~~gINLtkIESR-P~~~~~~~--Y~FfiD-~eg~~  255 (313)
T 3mwb_A          203 TVVVPLPEDHPGALMEILDQFASRGVNLSRIESR-PTGQYLGH--YFFSID-ADGHA  255 (313)
T ss_dssp             EEEEECSSCCTTHHHHHHHHHHTTTCCEEEEEEE-ECSSSTTS--EEEEEE-EESCT
T ss_pred             EEEEEeCCCCCCHHHHHHHHHHHCCccEEEEEEe-ecCCCCcc--EEEEEE-EeCCC
Confidence            4555564 99999999999999999999988876 44443333  459884 55654

>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}

Probab=89.84  E-value=1.2  Score=41.59  Aligned_cols=47  Identities=13%  Similarity=0.087  Sum_probs=35.7

Q ss_pred             CCccHHHHHHHHHHhCCceEEEEEeeccccCceEeeeeEEEEEcCCCCCCC
Q 019269          277 GRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVP  327 (343)
Q Consensus       277 DrpGLL~~I~~~l~~~gi~I~~AkI~~~T~g~~~~dv~~F~v~~~~g~~l~  327 (343)
                      |+||-||++-..|+.+|||+.+.... |+.+..-+  |.||| |-+|..-+
T Consensus       217 ~~pGaL~~~L~~Fa~~gINLtkIESR-P~~~~~~~--Y~Ffi-D~eg~~~d  263 (329)
T 3luy_A          217 TGPGVLANLLDVFRDAGLNMTSFISR-PIKGRTGT--YSFIV-TLDAAPWE  263 (329)
T ss_dssp             CSTTHHHHHHHHHHHTTCCEEEEEEE-EETTEEEE--EEEEE-EESSCTTS
T ss_pred             CCCCHHHHHHHHHHHCCcceEEEEee-ECCCCCcc--EEEEE-EEeCCcCC
Confidence            89999999999999999999998876 44443333  45887 46676533

>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3

Probab=89.82  E-value=0.79  Score=41.57  Aligned_cols=49  Identities=10%  Similarity=0.175  Sum_probs=36.8

Q ss_pred             eEEEEe---CCCccHHHHHHHHHHhCCceEEEEEeeccccCceEeeeeEEEEEcC
Q 019269          270 PVELSG---KGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEG  321 (343)
Q Consensus       270 ~ieV~~---~DrpGLL~~I~~~l~~~gi~I~~AkI~~~T~g~~~~dv~~F~v~~~  321 (343)
                      .+-+..   .|+||-|+++-..|+.+|||+.+.... |+.+..-+  |.|||.=.
T Consensus       188 sl~f~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESR-P~~~~~~~--Y~FfiD~e  239 (267)
T 2qmw_A          188 SLMFLITPMHDKPGLLASVLNTFALFNINLSWIESR-PLKTQLGM--YRFFVQAD  239 (267)
T ss_dssp             EEEEEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEE-ECSSSTTC--EEEEEEES
T ss_pred             EEEEEcCCCCCCcChHHHHHHHHHHcCCCeeEEEEe-ecCCCCcc--EEEEEEEe
Confidence            344555   799999999999999999999998876 44444333  45998533

>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}

Probab=89.31  E-value=2.7  Score=39.17  Aligned_cols=65  Identities=15%  Similarity=0.207  Sum_probs=43.5

Q ss_pred             CeEEEEEEEC--CcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEE-EEEEEEecCCCCCCChHHHHHHHHHHHH
Q 019269          175 GHTLVQIVCQ--DHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCE-IDLFIMQADGKKIVDPSKQNGLSSRLWM  246 (343)
Q Consensus       175 ~~t~i~V~~~--DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~-~d~F~v~~~g~~i~~~~~~~~l~~~L~~  246 (343)
                      ..+.+.+..+  |+||-|+++-..|+.+|+|+.  +|.++...+.. .=.|+|+-+|.. .++    .++++|.+
T Consensus       205 ~kts~i~~~~~~~~pGaL~~~L~~Fa~~gINLt--kIESRP~~~~~~~Y~FfiD~eg~~-~d~----~v~~AL~~  272 (329)
T 3luy_A          205 EYESVLTLIPLVTGPGVLANLLDVFRDAGLNMT--SFISRPIKGRTGTYSFIVTLDAAP-WEE----RFRDALVE  272 (329)
T ss_dssp             CEEEEEEEECSCCSTTHHHHHHHHHHHTTCCEE--EEEEEEETTEEEEEEEEEEESSCT-TSH----HHHHHHHH
T ss_pred             CceEEEEEecCCCCCCHHHHHHHHHHHCCcceE--EEEeeECCCCCccEEEEEEEeCCc-CCH----HHHHHHHH
Confidence            3455444454  799999999999999999999  77666544443 345788866643 333    34455433

>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}

Probab=88.93  E-value=0.73  Score=37.99  Aligned_cols=99  Identities=14%  Similarity=0.085  Sum_probs=59.7

Q ss_pred             CeEEEEEEE---CCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCC
Q 019269          175 GHTLVQIVC---QDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQP  251 (343)
Q Consensus       175 ~~t~i~V~~---~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~~L~~~  251 (343)
                      +.+.|+|.+   +++||..+++..+|+++|+||.  -|.+ .. .  .-+|.+....       ..+++.++    +...
T Consensus        17 ~va~Iti~~~~m~~~~g~~~~if~~La~~~I~vd--~I~~-s~-~--~Isf~v~~~~-------~~~~il~~----l~~~   79 (157)
T 3mah_A           17 GITVIKVKSSNKLLSWHFMRKLFEIFEFYQEPVD--MVAT-SE-V--GVSLTIDNDK-------NLPDIVRA----LSDI   79 (157)
T ss_dssp             EEEEEEEEECTTSCHHHHHHHHHHHHHHTTCCCS--CEEC-CS-S--EEEEEESCCT-------THHHHHHH----HTTT
T ss_pred             CEEEEEEEeCCCCCchhHHHHHHHHHHHcCCCEE--EEEe-cC-C--EEEEEECChH-------HHHHHHHH----Hhcc
Confidence            456788875   5789999999999999999997  3432 12 1  2236665211       22333333    2221


Q ss_pred             cceeeecCCCCceeeeeeeEEEEeC---CCccHHHHHHHHHHhCCceEEEEE
Q 019269          252 LRVTVVSRGPDTELLVANPVELSGK---GRPLVFHDITLALKMLDICIFSAE  300 (343)
Q Consensus       252 ~~~~~~~~~~~~~v~~~~~ieV~~~---DrpGLL~~I~~~l~~~gi~I~~Ak  300 (343)
                      ..+...     ..+   ..+.|.|.   ++||+..++..+|+  |+||....
T Consensus        80 ~~v~~~-----~~~---a~vsvvG~gm~~~~gv~a~~f~aL~--~Ini~~is  121 (157)
T 3mah_A           80 GDVTVD-----KDM---VIICIVGDMEWDNVGFEARIINALK--GVPVRMIS  121 (157)
T ss_dssp             EEEEEE-----EEE---EEEEEEC------CCHHHHHHHTTT--TSCCSEEE
T ss_pred             CeEEEe-----CCe---EEEEEECCCcccCccHHHHHHHHhC--CCCeEEEe
Confidence            111110     001   26777765   78999999999999  99988765

>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10

Probab=88.58  E-value=9.9  Score=37.54  Aligned_cols=108  Identities=13%  Similarity=0.234  Sum_probs=65.6

Q ss_pred             CEEEEEEEE---cCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEecCCCcccchhHHHHHHHHHHHHhcccc
Q 019269           40 DVFLLKLSC---YDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAM  116 (343)
Q Consensus        40 ~~~~I~V~~---~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~~l~~~~  116 (343)
                      +.+.|+|.+   .+++|..+++..+|+.+|+||.  -|.|.....   .|.|...+....+. ..+.++..+.+ +..  
T Consensus       340 ~~~~I~i~~~~m~~~~g~~~~if~~la~~~I~vd--~I~sse~si---s~~v~~~~~~~~~~-~~~~l~~~~~e-l~~--  410 (510)
T 2cdq_A          340 NVTMLDIASTRMLGQVGFLAKVFSIFEELGISVD--VVATSEVSI---SLTLDPSKLWSREL-IQQELDHVVEE-LEK--  410 (510)
T ss_dssp             EEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEE--EEEEETTEE---EEEECCGGGSSSCC-CHHHHHHHHHH-HTT--
T ss_pred             CeEEEEEEcCCCCCcccHHHHHHHHHHHcCCcEE--EEEeCCCeE---EEEEechHhhhhhH-HHHHHHHHHHH-hCC--
Confidence            446678875   6789999999999999999998  444533332   25554321110000 01111111111 110  


Q ss_pred             cccccccccceeecccCCCCCCchHHHhhhcccCCCCCCCCCCCCCccEEEEEeCCCCCeEEEEEEEC--CcccHHHHHH
Q 019269          117 ISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQ--DHKGLLYDIM  194 (343)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~i~V~~~--DrpGLl~~i~  194 (343)
                                                                    -..|.++.    +...|.|.|.  ..||+.+++.
T Consensus       411 ----------------------------------------------~~~v~~~~----~~a~VsiVG~m~~~~Gvaa~~f  440 (510)
T 2cdq_A          411 ----------------------------------------------IAVVNLLK----GRAIISLIGNVQHSSLILERAF  440 (510)
T ss_dssp             ----------------------------------------------TSEEEEEE----EEEEEEEEECGGGHHHHHHHHH
T ss_pred             ----------------------------------------------CCeEEEeC----CcEEEEEEEECCCChhHHHHHH
Confidence                                                          01233321    3467778876  7789999999


Q ss_pred             HHHHhCCeeEEE
Q 019269          195 RTLKDYNIQVSY  206 (343)
Q Consensus       195 ~~L~~~glnI~~  206 (343)
                      .+|++.|+||..
T Consensus       441 ~aL~~~~InI~m  452 (510)
T 2cdq_A          441 HVLYTKGVNVQM  452 (510)
T ss_dssp             HHHHHHTCCCSE
T ss_pred             HHHHHCCCCEEE
Confidence            999999999983

>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10

Probab=88.57  E-value=1  Score=44.59  Aligned_cols=108  Identities=12%  Similarity=0.132  Sum_probs=67.1

Q ss_pred             CeEEEEEEE---CCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCC-CCC-CChHHHHHHHHHHHHHHc
Q 019269          175 GHTLVQIVC---QDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADG-KKI-VDPSKQNGLSSRLWMELL  249 (343)
Q Consensus       175 ~~t~i~V~~---~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g-~~i-~~~~~~~~l~~~L~~~L~  249 (343)
                      +.+.|+|.+   .++||++++|..+|+++|+||..  |.+ .. .  --+|.+.... ... ...+.++++.    +.+.
T Consensus       340 ~~~~I~i~~~~m~~~~g~~~~if~~la~~~I~vd~--I~s-se-~--sis~~v~~~~~~~~~~~~~~l~~~~----~el~  409 (510)
T 2cdq_A          340 NVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDV--VAT-SE-V--SISLTLDPSKLWSRELIQQELDHVV----EELE  409 (510)
T ss_dssp             EEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEE--EEE-ET-T--EEEEEECCGGGSSSCCCHHHHHHHH----HHHT
T ss_pred             CeEEEEEEcCCCCCcccHHHHHHHHHHHcCCcEEE--EEe-CC-C--eEEEEEechHhhhhhHHHHHHHHHH----HHhC
Confidence            467888886   67899999999999999999994  443 22 1  2236665221 110 0122223322    3333


Q ss_pred             CCcceeeecCCCCceeeeeeeEEEEeC--CCccHHHHHHHHHHhCCceEEEEE
Q 019269          250 QPLRVTVVSRGPDTELLVANPVELSGK--GRPLVFHDITLALKMLDICIFSAE  300 (343)
Q Consensus       250 ~~~~~~~~~~~~~~~v~~~~~ieV~~~--DrpGLL~~I~~~l~~~gi~I~~Ak  300 (343)
                      .-..+.+.     ..+   ..|.|.+.  ..||+..++..+|.+.||||....
T Consensus       410 ~~~~v~~~-----~~~---a~VsiVG~m~~~~Gvaa~~f~aL~~~~InI~mIs  454 (510)
T 2cdq_A          410 KIAVVNLL-----KGR---AIISLIGNVQHSSLILERAFHVLYTKGVNVQMIS  454 (510)
T ss_dssp             TTSEEEEE-----EEE---EEEEEEECGGGHHHHHHHHHHHHHHHTCCCSEEE
T ss_pred             CCCeEEEe-----CCc---EEEEEEEECCCChhHHHHHHHHHHHCCCCEEEEE
Confidence            21111110     111   25777777  889999999999999999998764

>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}

Probab=87.95  E-value=1.2  Score=41.44  Aligned_cols=54  Identities=28%  Similarity=0.474  Sum_probs=40.1

Q ss_pred             CCeEEEEEEEC-CcccHHHHHHHHHHhCCeeEEEEEEEEeecCCE-EEEEEEEecCCC
Q 019269          174 PGHTLVQIVCQ-DHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNC-EIDLFIMQADGK  229 (343)
Q Consensus       174 ~~~t~i~V~~~-DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~-~~d~F~v~~~g~  229 (343)
                      ...|.|.+..+ |+||-|+++-+.|+.+|+|+.  +|.++...+. ..=.|+|+-+|.
T Consensus       199 ~~kTSl~f~~~~~~pGaL~~~L~~Fa~~gINLt--kIESRP~~~~~~~Y~FfiD~eg~  254 (313)
T 3mwb_A          199 ADKTTVVVPLPEDHPGALMEILDQFASRGVNLS--RIESRPTGQYLGHYFFSIDADGH  254 (313)
T ss_dssp             SEEEEEEEECSSCCTTHHHHHHHHHHTTTCCEE--EEEEEECSSSTTSEEEEEEEESC
T ss_pred             CCeEEEEEEeCCCCCCHHHHHHHHHHHCCccEE--EEEEeecCCCCccEEEEEEEeCC
Confidence            35678878886 999999999999999999998  6766543322 223488885554

>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3

Probab=87.81  E-value=1.3  Score=40.06  Aligned_cols=51  Identities=27%  Similarity=0.393  Sum_probs=38.7

Q ss_pred             CeEEEEEEE---CCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCE-EEEEEEEecC
Q 019269          175 GHTLVQIVC---QDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNC-EIDLFIMQAD  227 (343)
Q Consensus       175 ~~t~i~V~~---~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~-~~d~F~v~~~  227 (343)
                      ..|.|.+..   +|+||-|+++-+.|+.+|+|+.  +|.++...+. ..-.|+++-+
T Consensus       185 ~ktsl~f~~~~~~~~pGaL~~~L~~Fa~~gINLt--kIESRP~~~~~~~Y~FfiD~e  239 (267)
T 2qmw_A          185 NATSLMFLITPMHDKPGLLASVLNTFALFNINLS--WIESRPLKTQLGMYRFFVQAD  239 (267)
T ss_dssp             SCSEEEEEEEESSCCTTHHHHHHHHHHTTTCCEE--EEEEEECSSSTTCEEEEEEES
T ss_pred             CeEEEEEEcCCCCCCcChHHHHHHHHHHcCCCee--EEEEeecCCCCccEEEEEEEe
Confidence            456676777   8999999999999999999999  7766544332 2334888844

>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}

Probab=87.46  E-value=5.7  Score=32.43  Aligned_cols=47  Identities=6%  Similarity=0.132  Sum_probs=33.8

Q ss_pred             CCEEEEEEEE---cCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEec
Q 019269           39 SDVFLLKLSC---YDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTD   90 (343)
Q Consensus        39 ~~~~~I~V~~---~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~   90 (343)
                      .+...|+|.+   ++.||..+++..+|+.+|+||.  -|.+..+.   -.|.|..
T Consensus        16 ~~va~Iti~~~~m~~~~g~~~~if~~La~~~I~vd--~I~~s~~~---Isf~v~~   65 (157)
T 3mah_A           16 DGITVIKVKSSNKLLSWHFMRKLFEIFEFYQEPVD--MVATSEVG---VSLTIDN   65 (157)
T ss_dssp             EEEEEEEEEECTTSCHHHHHHHHHHHHHHTTCCCS--CEECCSSE---EEEEESC
T ss_pred             CCEEEEEEEeCCCCCchhHHHHHHHHHHHcCCCEE--EEEecCCE---EEEEECC
Confidence            3456788885   5788999999999999999997  44454332   2366653

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=85.17  E-value=2.2  Score=41.10  Aligned_cols=49  Identities=16%  Similarity=0.249  Sum_probs=39.8

Q ss_pred             CCeEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEE
Q 019269          174 PGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIM  224 (343)
Q Consensus       174 ~~~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v  224 (343)
                      .+...|.+.-+|+||.+.+|..+|+++|+||..-...  +.|+.+.-+.-+
T Consensus       341 ~~~~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~--~~~~~~y~~~d~  389 (416)
T 3k5p_A          341 PTGTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQ--TDGEVGYLVMEA  389 (416)
T ss_dssp             SSSEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEE--ECSSCEEEEEEE
T ss_pred             CCceEEEEEecCCccHHHHHHHHHHHcCCCHHHHhcc--CCCceEEEEEEe
Confidence            3568999999999999999999999999999976655  677766533333

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=84.69  E-value=3.4  Score=40.20  Aligned_cols=38  Identities=29%  Similarity=0.174  Sum_probs=31.2

Q ss_pred             eeeeeeEEEEeCCCccHHHHHHHHHHhCCceEEEEEee
Q 019269          265 LLVANPVELSGKGRPLVFHDITLALKMLDICIFSAEIG  302 (343)
Q Consensus       265 v~~~~~ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~  302 (343)
                      +.-.+.+.+...|+||.|.+|+.+|.++||+|.+..=.
T Consensus       356 ~~~~yy~r~~~~d~~gvl~~i~~~~~~~~isi~~~~q~  393 (444)
T 3mtj_A          356 VRTAYYLRLRAFDRPGVLADITRILADSSISIDAMVQK  393 (444)
T ss_dssp             CEEEEEEEEEEC-CCHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             cceeeEEEEEecCcccHHHHHHHHHHhcCCceeEEeec
Confidence            33445788999999999999999999999999886543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	343
d1u8sa1	86	putative transcriptional repressor VC2159 {Vibrio	98.81
d1u8sa1	86	putative transcriptional repressor VC2159 {Vibrio	98.7
d1zpva1	83	UPF0237 protein SP0238 {Streptococcus pneumoniae [	98.53
d1zpva1	83	UPF0237 protein SP0238 {Streptococcus pneumoniae [	98.53
d1u8sa2	93	putative transcriptional repressor VC2159 {Vibrio	98.1
d1u8sa2	93	putative transcriptional repressor VC2159 {Vibrio	97.98
d1ygya3	78	Phosphoglycerate dehydrogenase, regulatory (C-term	97.83
d1ygya3	78	Phosphoglycerate dehydrogenase, regulatory (C-term	97.82
d1y7pa2	77	Hypothetical protein AF1403, N-terminal domain {Ar	97.79
d2f06a1	71	Hypothetical protein BT0572 {Bacteroides thetaiota	97.54
d1y7pa2	77	Hypothetical protein AF1403, N-terminal domain {Ar	97.4
d2f06a1	71	Hypothetical protein BT0572 {Bacteroides thetaiota	97.36
d2fgca2	78	Acetolactate synthase small subunit, IlvH {Thermot	97.33
d2pc6a2	77	Acetolactate synthase small subunit, IlvH {Nitroso	97.32
d2f06a2	70	Hypothetical protein BT0572 {Bacteroides thetaiota	97.31
d2f1fa1	76	Acetolactate synthase small subunit, IlvH {Escheri	97.26
d2f1fa1	76	Acetolactate synthase small subunit, IlvH {Escheri	97.23
d2pc6a2	77	Acetolactate synthase small subunit, IlvH {Nitroso	97.23
d2fgca2	78	Acetolactate synthase small subunit, IlvH {Thermot	97.21
d2f06a2	70	Hypothetical protein BT0572 {Bacteroides thetaiota	97.2
d1sc6a3	84	Phosphoglycerate dehydrogenase, regulatory (C-term	97.04
d1sc6a3	84	Phosphoglycerate dehydrogenase, regulatory (C-term	96.73
d2qmwa2	80	Prephenate dehydratase C-terminal domain {Staphylo	95.72
d1phza1	97	Phenylalanine hydroxylase N-terminal domain {Rat (	95.48
d2qmwa2	80	Prephenate dehydratase C-terminal domain {Staphylo	94.95
d1phza1	97	Phenylalanine hydroxylase N-terminal domain {Rat (	94.37
d2cdqa2	91	Aspartokinase {Thale cress (Arabidopsis thaliana)	86.82
d2cdqa2	91	Aspartokinase {Thale cress (Arabidopsis thaliana)	86.44
d2hmfa2	67	Aspartokinase {Methanococcus jannaschii [TaxId: 21	85.7
d2hmfa2	67	Aspartokinase {Methanococcus jannaschii [TaxId: 21	83.85
d2hmfa3	100	Aspartokinase {Methanococcus jannaschii [TaxId: 21	83.29
d2hmfa3	100	Aspartokinase {Methanococcus jannaschii [TaxId: 21	83.2

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.81  E-value=2e-08  Score=74.71  Aligned_cols=66  Identities=12%  Similarity=0.167  Sum_probs=55.3

Q ss_pred             CCCEEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEecCCCcccchhHHHHHHHHHHH
Q 019269           38 PSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT  110 (343)
Q Consensus        38 ~~~~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~  110 (343)
                      ...+++|+++|+||||++++++++|+.+||||.+++.++. +|.+.-.+.|.-      ++..++++++.|..
T Consensus         2 m~~~~vitv~G~DrpGiva~vt~~l~~~g~NI~d~~~~~~-~~~~~~~~~v~~------~~~~~~~l~~~L~~   67 (86)
T d1u8sa1           2 LTQHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMF-GKEFTLLMLISG------SPSNITRVETTLPL   67 (86)
T ss_dssp             CCEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEE-TTEEEEEEEEEE------CHHHHHHHHHHHHH
T ss_pred             CccEEEEEEEeCCCChHHHHHHHHHHHCCCeEEEeEeEEE-CCeeEEEEEEEc------CcccHHHHHHHHHH
Confidence            4568899999999999999999999999999999999997 666666666653      35567888888877

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.70  E-value=5.2e-08  Score=72.36  Aligned_cols=71  Identities=18%  Similarity=0.266  Sum_probs=54.0

Q ss_pred             CeEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCCcce
Q 019269          175 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLRV  254 (343)
Q Consensus       175 ~~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~~L~~~~~~  254 (343)
                      .+++|++.|+||||++++++++|+++|+||.+++..  +.++...-.+.+.-+      +...++|++.|.+ +.+++.+
T Consensus         4 ~~~vitv~G~DrpGiva~vt~~l~~~g~NI~d~~~~--~~~~~~~~~~~v~~~------~~~~~~l~~~L~~-l~~~l~l   74 (86)
T d1u8sa1           4 QHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIA--MFGKEFTLLMLISGS------PSNITRVETTLPL-LGQQHDL   74 (86)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEE--EETTEEEEEEEEEEC------HHHHHHHHHHHHH-HHHHHTC
T ss_pred             cEEEEEEEeCCCChHHHHHHHHHHHCCCeEEEeEeE--EECCeeEEEEEEEcC------cccHHHHHHHHHH-HHHHhCC
Confidence            578999999999999999999999999999999987  567777655666521      3356678777643 4444333

>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: SP0238-like
domain: UPF0237 protein SP0238
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.53  E-value=3.6e-07  Score=67.11  Aligned_cols=63  Identities=10%  Similarity=0.157  Sum_probs=46.7

Q ss_pred             EEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHHHH
Q 019269          177 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWM  246 (343)
Q Consensus       177 t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~  246 (343)
                      ++|++.|+||||++++++++|+++|+||.+.+-.  +.++.+.-.+.+..+.. .    ..++|+++|..
T Consensus         3 ~vitv~g~DrpGiVa~vt~~l~~~g~NI~d~~q~--~~~~~f~~~~~v~~~~~-~----~~~~l~~~l~~   65 (83)
T d1zpva1           3 AIITVVGKDKSGIVAGVSGKIAELGLNIDDISQT--VLDEYFTMMAVVSSDEK-Q----DFTYLRNEFEA   65 (83)
T ss_dssp             EEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEE--EETTEEEEEEEEEESSC-C----CHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHCCCeEEEEEeE--EeCCEEEEEEEEEEecC-C----CHHHHHHHHHH
Confidence            6899999999999999999999999999998876  45666655555552221 1    13456676643

>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: SP0238-like
domain: UPF0237 protein SP0238
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.53  E-value=3.6e-07  Score=67.09  Aligned_cols=63  Identities=14%  Similarity=0.232  Sum_probs=49.9

Q ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEecCCCcccchhHHHHHHHHHHH
Q 019269           42 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT  110 (343)
Q Consensus        42 ~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~  110 (343)
                      ++|+|.|+||||+.++++++|+.+|+||.+.+.++. ++.+.-.+.+..+.+.     ..+.+++.|..
T Consensus         3 ~vitv~g~DrpGiVa~vt~~l~~~g~NI~d~~q~~~-~~~f~~~~~v~~~~~~-----~~~~l~~~l~~   65 (83)
T d1zpva1           3 AIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVL-DEYFTMMAVVSSDEKQ-----DFTYLRNEFEA   65 (83)
T ss_dssp             EEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEE-TTEEEEEEEEEESSCC-----CHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHCCCeEEEEEeEEe-CCEEEEEEEEEEecCC-----CHHHHHHHHHH
Confidence            689999999999999999999999999999999886 5666566666543221     24567777766

>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.10  E-value=4.2e-06  Score=62.58  Aligned_cols=36  Identities=14%  Similarity=0.039  Sum_probs=32.7

Q ss_pred             eEEEEeCCCccHHHHHHHHHHhCCceEEEEEeeccccC
Q 019269          270 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIG  307 (343)
Q Consensus       270 ~ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~~~T~g  307 (343)
                      .+.|.|+|||||+++|+++|+++|+||..+...  +..
T Consensus         8 ~v~v~g~DrpGIV~~it~~la~~~~nI~~l~t~--~~~   43 (93)
T d1u8sa2           8 EVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQ--TIS   43 (93)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEE--EEC
T ss_pred             EEEEEECCCCCHHHHHHHHHHHcCCCchhhhcc--ccc
Confidence            678899999999999999999999999999887  543

>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=97.98  E-value=2.8e-05  Score=57.92  Aligned_cols=65  Identities=9%  Similarity=0.060  Sum_probs=45.1

Q ss_pred             EEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCC-------EEEEEEEEecCCCcccchhHHHHHHHHHHH
Q 019269           41 VFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDG-------KVMDLFFVTDTRELLHTRKRKEDTYEHLKT  110 (343)
Q Consensus        41 ~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g-------~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~  110 (343)
                      .+.|+|.|+||||++++|+++|+++|+||.+.+-.+....       .+.-.+.+..+.+     ...+.|++.|..
T Consensus         6 tv~v~v~g~DrpGIV~~it~~la~~~~nI~~l~t~~~~a~~~~~~~~~f~~~~~~~~p~~-----~~~~~l~~~l~~   77 (93)
T d1u8sa2           6 TVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVDSG-----CNLMQLQEEFDA   77 (93)
T ss_dssp             EEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEECTT-----SCHHHHHHHHHH
T ss_pred             EEEEEEEECCCCCHHHHHHHHHHHcCCCchhhhcccccccCCcccCccEEEEEEEEcCcc-----ccHHHHHHHHHH
Confidence            4578899999999999999999999999998887664321       2222223333322     235677777766

>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.83  E-value=6.7e-05  Score=53.94  Aligned_cols=49  Identities=18%  Similarity=0.156  Sum_probs=41.2

Q ss_pred             eEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEE
Q 019269          176 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIM  224 (343)
Q Consensus       176 ~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v  224 (343)
                      .+.+.+.-.|+||++++|+.+|+++|+||...++.+...|+.+.-++.+
T Consensus         3 G~~L~i~~~D~PGvi~~I~~~l~~~~iNI~~m~~~~~~~g~~a~~vi~v   51 (78)
T d1ygya3           3 GINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRL   51 (78)
T ss_dssp             SEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEE
T ss_pred             ceEEEEEeCCcCCHHHHHHHHHHhcCcChhhheeeecCCCCeEEEEEEc
Confidence            4678888999999999999999999999999998765567777655555

>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.82  E-value=5.6e-05  Score=54.37  Aligned_cols=61  Identities=18%  Similarity=0.162  Sum_probs=46.4

Q ss_pred             eEEEEeCCCccHHHHHHHHHHhCCceEEEEEeeccccCceEeeeeEEEEEcCCCCCCCchHHHHHHHH
Q 019269          270 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWK  337 (343)
Q Consensus       270 ~ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~~~T~g~~~~dv~~F~v~~~~g~~l~~~~~~~~l~~  337 (343)
                      .+-+.-.|+||+|.+|+.+|.++|+||....+.++..|+.+.=     +.+.++ +++++ ..++|++
T Consensus         5 ~L~i~~~D~PGvi~~I~~~l~~~~iNI~~m~~~~~~~g~~a~~-----vi~vD~-~~~~~-vl~~I~~   65 (78)
T d1ygya3           5 NLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATI-----LLRLDQ-DVPDD-VRTAIAA   65 (78)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEE-----EEEESS-CCCHH-HHHHHHH
T ss_pred             EEEEEeCCcCCHHHHHHHHHHhcCcChhhheeeecCCCCeEEE-----EEEcCC-CccHH-HHHHHHc
Confidence            5778889999999999999999999999999985566776633     333333 45544 6677765

>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.79  E-value=1.1e-05  Score=58.02  Aligned_cols=63  Identities=17%  Similarity=0.030  Sum_probs=40.0

Q ss_pred             eEEEEeCCCccHHHHHHHHHHhCCceEEEEEeeccccCceEeeeeEEEEEcCCCCCCCchHHHHHHH
Q 019269          270 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVW  336 (343)
Q Consensus       270 ~ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~~~T~g~~~~dv~~F~v~~~~g~~l~~~~~~~~l~  336 (343)
                      .|.|.+.||||+|++|+.+|+++++||.+.....+..| .+.-...||+.+.+++ +  +.+.++|+
T Consensus         3 ~i~i~~~Dr~GlL~di~~~ia~~~~NI~~i~~~~~~~g-~~~~~~~i~v~~~~~~-l--~~ll~kL~   65 (77)
T d1y7pa2           3 GLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHG-EHEGKALIYFEIEGGD-F--EKILERVK   65 (77)
T ss_dssp             EEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSS-TTTTEEEEEEEECSSC-H--HHHHHHHH
T ss_pred             eEEEEEecCCChHHHHHHHHHHcCCCeEEEEeeccCCC-eEEEEEEEEEEcCccc-H--HHHHHHHH
Confidence            57899999999999999999999999999987722333 3333324777655432 2  23455554

>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.54  E-value=0.00025  Score=49.90  Aligned_cols=47  Identities=17%  Similarity=0.179  Sum_probs=42.1

Q ss_pred             EEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEec
Q 019269           43 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTD   90 (343)
Q Consensus        43 ~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~   90 (343)
                      +|.|..+|+||-|++++++|.+.|+||.....+.. .++.+-+|.+.+
T Consensus         1 ViaV~v~d~pG~L~~v~~~L~~~~InI~~~y~~~~-~~~~~~vl~vdd   47 (71)
T d2f06a1           1 VVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFAN-NNVANVVIRPSN   47 (71)
T ss_dssp             EEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEE-TTEEEEEEEESC
T ss_pred             CEEEEecCCccHHHHHHHHHHHCCCCEEEEEEEcC-CCcEEEEEEECC
Confidence            47888999999999999999999999999999986 678888888864

>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.40  E-value=4.3e-05  Score=54.84  Aligned_cols=49  Identities=18%  Similarity=0.208  Sum_probs=36.0

Q ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEE--EEEEec
Q 019269           42 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMD--LFFVTD   90 (343)
Q Consensus        42 ~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d--~f~V~~   90 (343)
                      .-|.|.+.||||+|++++.+++.+|.||.+.+..+..+|.+-.  .+++..
T Consensus         2 ~~i~i~~~Dr~GlL~di~~~ia~~~~NI~~i~~~~~~~g~~~~~~~i~v~~   52 (77)
T d1y7pa2           2 RGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEI   52 (77)
T ss_dssp             EEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEE
T ss_pred             eeEEEEEecCCChHHHHHHHHHHcCCCeEEEEeeccCCCeEEEEEEEEEEc
Confidence            3588999999999999999999999999999988866765433  444443

>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.36  E-value=0.0003  Score=49.46  Aligned_cols=46  Identities=17%  Similarity=0.198  Sum_probs=39.3

Q ss_pred             EEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEe
Q 019269          178 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ  225 (343)
Q Consensus       178 ~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~  225 (343)
                      +|.|..+|+||-|++++++|++.|+||+...++.  .++.+.-.|.++
T Consensus         1 ViaV~v~d~pG~L~~v~~~L~~~~InI~~~y~~~--~~~~~~~vl~vd   46 (71)
T d2f06a1           1 VVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFA--NNNVANVVIRPS   46 (71)
T ss_dssp             EEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEE--ETTEEEEEEEES
T ss_pred             CEEEEecCCccHHHHHHHHHHHCCCCEEEEEEEc--CCCcEEEEEEEC
Confidence            5788899999999999999999999999999884  456777666663

>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

Probab=97.33  E-value=0.00046  Score=49.26  Aligned_cols=63  Identities=8%  Similarity=0.206  Sum_probs=43.8

Q ss_pred             EEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHHH
Q 019269          177 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLW  245 (343)
Q Consensus       177 t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~  245 (343)
                      ..|.+...|+||+|++|++.|+..|+||.+..+......+...-++.+..+      ++..+++.+.|.
T Consensus         4 ~tisvlv~n~pGvL~Ri~~lF~rRg~NI~SL~v~~te~~~iSR~tivv~g~------~~~i~qi~kQl~   66 (78)
T d2fgca2           4 HLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGD------DKTIEQIEKQAY   66 (78)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEEC------TTHHHHHHHHHT
T ss_pred             EEEEEEEeCCCcHHHHHHHHHhhCCcceEEEEEeecCCCCeEEEEEEEEcC------HHHHHHHHHHHh
Confidence            578999999999999999999999999998887642233333333333321      224566666653

>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

Probab=97.32  E-value=0.00038  Score=49.63  Aligned_cols=65  Identities=5%  Similarity=0.070  Sum_probs=46.6

Q ss_pred             EEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHH
Q 019269          177 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWME  247 (343)
Q Consensus       177 t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~~  247 (343)
                      ..|.+...|+||+|++|++.|+..|+||.+..+.-....+...-++.+..      +++.++++.+.|.+.
T Consensus         3 ~tisv~veN~pGvL~Ris~lF~rRg~NI~Sltv~~te~~~iSRmtivv~~------~~~~i~qi~kQL~Kl   67 (77)
T d2pc6a2           3 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNG------PDEIVEQITKQLNKL   67 (77)
T ss_dssp             EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEE------CHHHHHHHHHHHHHS
T ss_pred             EEEEEEEECCccHHHHHHHHHhccCcceEEEEEeccCCCCeEEEEEEEEC------CHHHHHHHHHHHhCC
Confidence            46889999999999999999999999999888864223334433344431      244667777777553

>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.31  E-value=0.00018  Score=50.52  Aligned_cols=45  Identities=13%  Similarity=0.104  Sum_probs=37.2

Q ss_pred             eEEEEeCCCccHHHHHHHHHHhCCceEEEEEeeccccCceEeeeeEEEE
Q 019269          270 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLL  318 (343)
Q Consensus       270 ~ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~~~T~g~~~~dv~~F~v  318 (343)
                      .+.|...||||.|++|+.+|++.|+||.+..+.  .-.+..  +.||.+
T Consensus         5 QisV~~eNkpG~L~~v~~~~~~~~inI~sl~v~--~t~~~~--i~Riiv   49 (70)
T d2f06a2           5 QLSIFLENKSGRLTEVTEVLAKENINLSALCIA--ENADFG--ILRGIV   49 (70)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEE--ECSSCE--EEEEEE
T ss_pred             EEEEEEeCCCcHHHHHHHHHHHCCCCEEEEEEe--ecCCCC--EEEEEE
Confidence            589999999999999999999999999999998  444443  345644

>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

Probab=97.26  E-value=0.00056  Score=48.55  Aligned_cols=65  Identities=9%  Similarity=0.147  Sum_probs=45.3

Q ss_pred             EEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHH
Q 019269          177 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWME  247 (343)
Q Consensus       177 t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~~  247 (343)
                      ..+.+...|+||+|++|++.|+..|+||.+..+.- |...... -|.+...|    +++..+++.+.|.+.
T Consensus         2 htlsv~v~N~~GVL~RisglF~rRg~NI~Sl~v~~-te~~~iS-R~tivv~~----~~~~i~qi~kQL~Kl   66 (76)
T d2f1fa1           2 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAP-TDDPTLS-RMTIQTVG----DEKVLEQIEKQLHKL   66 (76)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEE-CSCSSEE-EEEEEEES----CHHHHHHHHHHHHHS
T ss_pred             EEEEEEEECCCcHHHHHHHHHHhcCcceEEEEEcc-cCCCCee-EEEEEEEC----CHHHHHHHHHHHhCC
Confidence            36889999999999999999999999999888763 3332222 23332222    245677777777553

>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

Probab=97.23  E-value=0.00087  Score=47.54  Aligned_cols=63  Identities=16%  Similarity=0.174  Sum_probs=47.0

Q ss_pred             EEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecC-CCEEEEEEEEecCCCcccchhHHHHHHHHHHHH
Q 019269           43 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTP-DGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTI  111 (343)
Q Consensus        43 ~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~-~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~~  111 (343)
                      .++++..|+||+|+++++.|+..|+||.+-.+.-+. .|..--++.+..      +++.++++.+.|.+.
T Consensus         3 tlsv~v~N~~GVL~RisglF~rRg~NI~Sl~v~~te~~~iSR~tivv~~------~~~~i~qi~kQL~Kl   66 (76)
T d2f1fa1           3 ILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVG------DEKVLEQIEKQLHKL   66 (76)
T ss_dssp             EEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEES------CHHHHHHHHHHHHHS
T ss_pred             EEEEEEECCCcHHHHHHHHHHhcCcceEEEEEcccCCCCeeEEEEEEEC------CHHHHHHHHHHHhCC
Confidence            578999999999999999999999999998887544 444433333332      355677777777763

>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

Probab=97.23  E-value=0.0008  Score=47.86  Aligned_cols=64  Identities=14%  Similarity=0.189  Sum_probs=49.4

Q ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecC-CCEEEEEEEEecCCCcccchhHHHHHHHHHHHH
Q 019269           42 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTP-DGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTI  111 (343)
Q Consensus        42 ~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~-~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~~  111 (343)
                      ..|.+...|+||.|+++++.|+..|+||.+-.+.-+. +|..--++.+..      +++.++++.+.|.+.
T Consensus         3 ~tisv~veN~pGvL~Ris~lF~rRg~NI~Sltv~~te~~~iSRmtivv~~------~~~~i~qi~kQL~Kl   67 (77)
T d2pc6a2           3 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNG------PDEIVEQITKQLNKL   67 (77)
T ss_dssp             EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEE------CHHHHHHHHHHHHHS
T ss_pred             EEEEEEEECCccHHHHHHHHHhccCcceEEEEEeccCCCCeEEEEEEEEC------CHHHHHHHHHHHhCC
Confidence            3688999999999999999999999999998887443 555544555543      355677777777773

>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

Probab=97.21  E-value=0.00093  Score=47.63  Aligned_cols=63  Identities=13%  Similarity=0.237  Sum_probs=46.3

Q ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecC-CCEEEEEEEEecCCCcccchhHHHHHHHHHHH
Q 019269           42 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTP-DGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT  110 (343)
Q Consensus        42 ~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~-~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~  110 (343)
                      ..|.++..|+||+|+++++.|+..|+||.+-.+..+. .|..=-++.+..      +++..+++.+.|.+
T Consensus         4 ~tisvlv~n~pGvL~Ri~~lF~rRg~NI~SL~v~~te~~~iSR~tivv~g------~~~~i~qi~kQl~K   67 (78)
T d2fgca2           4 HLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKG------DDKTIEQIEKQAYK   67 (78)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEE------CTTHHHHHHHHHTT
T ss_pred             EEEEEEEeCCCcHHHHHHHHHhhCCcceEEEEEeecCCCCeEEEEEEEEc------CHHHHHHHHHHHhC
Confidence            4789999999999999999999999999998876654 444333344432      23445666666655

>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.20  E-value=0.001  Score=46.50  Aligned_cols=46  Identities=20%  Similarity=0.192  Sum_probs=38.2

Q ss_pred             EEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEe
Q 019269           43 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVT   89 (343)
Q Consensus        43 ~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~   89 (343)
                      .|.|...||||.|++++++|+..|+||.+-.+..+ .+..+--+.|.
T Consensus         5 QisV~~eNkpG~L~~v~~~~~~~~inI~sl~v~~t-~~~~i~Riiv~   50 (70)
T d2f06a2           5 QLSIFLENKSGRLTEVTEVLAKENINLSALCIAEN-ADFGILRGIVS   50 (70)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEEC-SSCEEEEEEES
T ss_pred             EEEEEEeCCCcHHHHHHHHHHHCCCCEEEEEEeec-CCCCEEEEEEC
Confidence            58899999999999999999999999999888876 44444455554

>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Escherichia coli [TaxId: 562]

Probab=97.04  E-value=0.0037  Score=44.97  Aligned_cols=35  Identities=6%  Similarity=0.219  Sum_probs=31.6

Q ss_pred             EEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEE
Q 019269          177 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSR  211 (343)
Q Consensus       177 t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t  211 (343)
                      ..+.+.-+|+||.+++|+++|+++|+||.+....+
T Consensus        12 ~rl~i~~~d~PGvla~I~~~l~~~~iNI~~~~~~~   46 (84)
T d1sc6a3          12 RRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQT   46 (84)
T ss_dssp             EEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred             eEEEEEeCCcCCHHHHHHHHHHHcCCCHHHhcccc
Confidence            57777889999999999999999999999888764

>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Escherichia coli [TaxId: 562]

Probab=96.73  E-value=0.015  Score=41.58  Aligned_cols=36  Identities=19%  Similarity=0.224  Sum_probs=32.8

Q ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEec
Q 019269           42 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTT   77 (343)
Q Consensus        42 ~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~   77 (343)
                      ..+.+.-.|+||.+++|+++|+++|+||.+-...+.
T Consensus        12 ~rl~i~~~d~PGvla~I~~~l~~~~iNI~~~~~~~~   47 (84)
T d1sc6a3          12 RRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTS   47 (84)
T ss_dssp             EEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEEC
T ss_pred             eEEEEEeCCcCCHHHHHHHHHHHcCCCHHHhccccC
Confidence            577888899999999999999999999998888775

>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Prephenate dehydratase C-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=95.72  E-value=0.016  Score=41.16  Aligned_cols=48  Identities=13%  Similarity=0.208  Sum_probs=36.1

Q ss_pred             EEeCCCccHHHHHHHHHHhCCceEEEEEeeccccCceEeeeeEEEEEcCCCC
Q 019269          273 LSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGL  324 (343)
Q Consensus       273 V~~~DrpGLL~~I~~~l~~~gi~I~~AkI~~~T~g~~~~dv~~F~v~~~~g~  324 (343)
                      +...|+||-|+++-..|+++|||+.+..-. |..+..-+  |.|||. -+|.
T Consensus         7 ~~~~d~pGaL~~vL~~F~~~~INLt~IeSR-P~~~~~~~--Y~F~id-~~g~   54 (80)
T d2qmwa2           7 TPMHDKPGLLASVLNTFALFNINLSWIESR-PLKTQLGM--YRFFVQ-ADSA   54 (80)
T ss_dssp             EESSCCTTHHHHHHHHHHTTTCCEEEEEEE-ECSSSTTC--EEEEEE-ESCC
T ss_pred             EeCCCCCCHHHHHHHHHHHCCCCEEEEEee-ecCCCCce--EEEEEE-EecC
Confidence            345699999999999999999999998776 34443333  459885 4565

>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Phenylalanine hydroxylase N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.48  E-value=0.0087  Score=44.22  Aligned_cols=56  Identities=14%  Similarity=0.226  Sum_probs=41.2

Q ss_pred             CCCCeEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCE-EEEEEEEecCCC
Q 019269          172 LSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNC-EIDLFIMQADGK  229 (343)
Q Consensus       172 ~~~~~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~-~~d~F~v~~~g~  229 (343)
                      ...+.|.|.+..+|+||-|+++-..|+++|+|+.  +|.++...+. ..=.|+++-+|.
T Consensus        12 ~~~~ktSl~f~~~~~pGaL~~vL~~f~~~~INLt--~IeSRP~~~~~~~Y~F~id~eg~   68 (97)
T d1phza1          12 NQNGAISLIFSLKEEVGALAKVLRLFEENDINLT--HIESRPSRLNKDEYEFFTYLDKR   68 (97)
T ss_dssp             CSSCCEEEEEEEECCTTHHHHHHHHHHTTTCCTT--SEEEEECSSCTTEEEEEECBCGG
T ss_pred             CCCCcEEEEEEeCCCCCHHHHHHHHHHHCCCCEE--EEEeeccCCCCceEEEEEEcccC
Confidence            3445688888899999999999999999999998  5555433222 222488886553

>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Prephenate dehydratase C-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=94.95  E-value=0.039  Score=39.00  Aligned_cols=49  Identities=27%  Similarity=0.369  Sum_probs=35.4

Q ss_pred             EEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCE-EEEEEEEecCCC
Q 019269          179 VQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNC-EIDLFIMQADGK  229 (343)
Q Consensus       179 i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~-~~d~F~v~~~g~  229 (343)
                      +.+...|+||-|+++-+.|+++|+|+.  +|.++...+. -.=.|+++-+|.
T Consensus         5 ~i~~~~d~pGaL~~vL~~F~~~~INLt--~IeSRP~~~~~~~Y~F~id~~g~   54 (80)
T d2qmwa2           5 LITPMHDKPGLLASVLNTFALFNINLS--WIESRPLKTQLGMYRFFVQADSA   54 (80)
T ss_dssp             EEEESSCCTTHHHHHHHHHHTTTCCEE--EEEEEECSSSTTCEEEEEEESCC
T ss_pred             EEEeCCCCCCHHHHHHHHHHHCCCCEE--EEEeeecCCCCceEEEEEEEecC
Confidence            334457999999999999999999999  6666544333 222488885554

>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Phenylalanine hydroxylase N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.37  E-value=0.016  Score=42.70  Aligned_cols=52  Identities=13%  Similarity=-0.023  Sum_probs=38.9

Q ss_pred             eeEEEEeCCCccHHHHHHHHHHhCCceEEEEEeeccccCceEeeeeEEEEEcCCCC
Q 019269          269 NPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGL  324 (343)
Q Consensus       269 ~~ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~~~T~g~~~~dv~~F~v~~~~g~  324 (343)
                      +.|-+...|+||-|+++-..|+++|||+....-. |+.+..-.  |.|||. -+|.
T Consensus        17 tSl~f~~~~~pGaL~~vL~~f~~~~INLt~IeSR-P~~~~~~~--Y~F~id-~eg~   68 (97)
T d1phza1          17 ISLIFSLKEEVGALAKVLRLFEENDINLTHIESR-PSRLNKDE--YEFFTY-LDKR   68 (97)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEE-ECSSCTTE--EEEEEC-BCGG
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHHCCCCEEEEEee-ccCCCCce--EEEEEE-cccC
Confidence            3566667899999999999999999998887665 44444433  459884 5676

>d2cdqa2 d.58.18.10 (A:329-419) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=86.82  E-value=0.45  Score=34.00  Aligned_cols=34  Identities=9%  Similarity=0.155  Sum_probs=30.2

Q ss_pred             eeEEEEeC---CCccHHHHHHHHHHhCCceEEEEEee
Q 019269          269 NPVELSGK---GRPLVFHDITLALKMLDICIFSAEIG  302 (343)
Q Consensus       269 ~~ieV~~~---DrpGLL~~I~~~l~~~gi~I~~AkI~  302 (343)
                      +.+.|.+.   ++||++++|..+|++.||||.....+
T Consensus        14 a~i~v~g~~m~~~~G~~a~if~~La~~~Inv~~Is~S   50 (91)
T d2cdqa2          14 TMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVATS   50 (91)
T ss_dssp             EEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             EEEEEEeCCCCCCccHHHHHHHHHHHcCCcEEEEEec
Confidence            36888875   99999999999999999999998765

>d2cdqa2 d.58.18.10 (A:329-419) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=86.44  E-value=1.3  Score=31.37  Aligned_cols=47  Identities=17%  Similarity=0.333  Sum_probs=35.1

Q ss_pred             CCEEEEEEEE---cCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEec
Q 019269           39 SDVFLLKLSC---YDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTD   90 (343)
Q Consensus        39 ~~~~~I~V~~---~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~   90 (343)
                      .+.+.|+|.+   +++||+.+++..+|+.+|+||.  -|.+.....   .|.|..
T Consensus        11 ~~ia~i~v~g~~m~~~~G~~a~if~~La~~~Inv~--~Is~Se~~i---s~~v~~   60 (91)
T d2cdqa2          11 RNVTMLDIASTRMLGQVGFLAKVFSIFEELGISVD--VVATSEVSI---SLTLDP   60 (91)
T ss_dssp             EEEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEE--EEEEETTEE---EEEECC
T ss_pred             CCEEEEEEEeCCCCCCccHHHHHHHHHHHcCCcEE--EEEecCCeE---EEEEch
Confidence            3567889987   5899999999999999999998  444543322   355543

>d2hmfa2 d.58.18.10 (A:404-470) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=85.70  E-value=2  Score=28.51  Aligned_cols=30  Identities=13%  Similarity=0.288  Sum_probs=26.0

Q ss_pred             EEEEEE---CCcccHHHHHHHHHHhCCeeEEEE
Q 019269          178 LVQIVC---QDHKGLLYDIMRTLKDYNIQVSYG  207 (343)
Q Consensus       178 ~i~V~~---~DrpGLl~~i~~~L~~~glnI~~A  207 (343)
                      .|.+.|   +++||+.+++..+|++.|+||...
T Consensus         3 ~vsvvG~gm~~~~gi~arif~~L~~~~InV~mI   35 (67)
T d2hmfa2           3 VISVVGAGMRGAKGIAGKIFTAVSESGANIKMI   35 (67)
T ss_dssp             EEEEECTTTTTCTTHHHHHHHHHHHTTCCCCEE
T ss_pred             EEEEEeCCCCCCccHHHHHHHHHHHcCCChHHe
Confidence            566776   689999999999999999999843

>d2hmfa2 d.58.18.10 (A:404-470) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=83.85  E-value=2.5  Score=27.96  Aligned_cols=29  Identities=14%  Similarity=0.197  Sum_probs=26.2

Q ss_pred             EEEEEEE---cCCCcHHHHHHHHHHhCCCeEE
Q 019269           42 FLLKLSC---YDRKGLLYDVTAVLCELELTIE   70 (343)
Q Consensus        42 ~~I~V~~---~Dr~GLl~~i~~~L~~~glnI~   70 (343)
                      ..|++++   +++||+.+++..+|.+.|+||.
T Consensus         2 a~vsvvG~gm~~~~gi~arif~~L~~~~InV~   33 (67)
T d2hmfa2           2 CVISVVGAGMRGAKGIAGKIFTAVSESGANIK   33 (67)
T ss_dssp             EEEEEECTTTTTCTTHHHHHHHHHHHTTCCCC
T ss_pred             EEEEEEeCCCCCCccHHHHHHHHHHHcCCChH
Confidence            4678887   6899999999999999999998

>d2hmfa3 d.58.18.10 (A:304-403) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=83.29  E-value=1.6  Score=31.49  Aligned_cols=33  Identities=18%  Similarity=0.212  Sum_probs=29.2

Q ss_pred             CeEEEEEEE---CCcccHHHHHHHHHHhCCeeEEEE
Q 019269          175 GHTLVQIVC---QDHKGLLYDIMRTLKDYNIQVSYG  207 (343)
Q Consensus       175 ~~t~i~V~~---~DrpGLl~~i~~~L~~~glnI~~A  207 (343)
                      +...|++.|   +++||+.+++..+|++.|+||...
T Consensus        14 nva~IsivG~~m~~~~Gi~arif~~La~~~InV~mI   49 (100)
T d2hmfa3          14 NVALINIFGAGMVGVSGTAARIFKALGEEEVNVILI   49 (100)
T ss_dssp             EEEEEEEEECSSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CEEEEEEECCCCCCCcchHHHHHHHHHHcCCCHHHe
Confidence            457899988   799999999999999999999943

>d2hmfa3 d.58.18.10 (A:304-403) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=83.20  E-value=1.8  Score=31.10  Aligned_cols=64  Identities=16%  Similarity=0.210  Sum_probs=42.2

Q ss_pred             CCEEEEEEEE---cCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEecCCCcccchhHHHHHHHHHHHHhc
Q 019269           39 SDVFLLKLSC---YDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILG  113 (343)
Q Consensus        39 ~~~~~I~V~~---~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~~l~  113 (343)
                      .+...|+|.|   +++||+.+++..+|+..|+||.--...+....   -.|.|..        ...++..+.|.+.+.
T Consensus        13 ~nva~IsivG~~m~~~~Gi~arif~~La~~~InV~mIsQ~~Se~~---Isf~V~~--------~d~~~a~~~L~~~f~   79 (100)
T d2hmfa3          13 KNVALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGSSETN---ISLVVSE--------EDVDKALKALKREFG   79 (100)
T ss_dssp             EEEEEEEEEECSSSCHHHHHHHHHHHHHHTTCCEEEEEECCTTCC---EEEEECS--------TTHHHHHHHHHHHHC
T ss_pred             CCEEEEEEECCCCCCCcchHHHHHHHHHHcCCCHHHeeccCCcce---EEEEEeH--------HHHHHHHHHHHHHHH
Confidence            3456899988   68999999999999999999983222232222   2365543        234455556666663