Citrus Sinensis ID: 019274

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340---
Protein Sequence
MIQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGDGSFSKIIPVEEDEPHIEALRTVNRRFNEIRAQLPLSDYFLQ
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHHHHcccccHHHcHHHHHHHHHHHHHHHcccccEEEccccHHHHHHHHHHHHHHHcccEEEccccEEEEEEEcccEEEEEEEcccEEEEccEEEEcccHHHHHHHHcccccccHHHHHHHHcccccEEEEEEEcccccccccccccccccccccccHHHHHHHHHHccccccccEEEEEEEEcccccccccHHHHHHHHHHHHHHHccccccccEEEEEEEEEccccccccccccccccccccccccEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHHHHcccEEEEcccEEEEEEcccccEEEEEEEccEEEEEEEEEEEcccHHHHHHcccHHHcccHHHHHHHcccccEEEEEEEEEcccccccccccccccccccccEEHHHHHHHHHHHccccccEEEEEEccccccccccHHHHHHHHHHHHHHHcccccccEEEEEEEEEcccHHHHccccccccccccccccccEEEcccccHHHHccccccccEEcHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHccccccccccc
Coil and Loop (DISEMBL)
miqfgcserlyrnvigplvqvglfapaeqCSAAATLGILYFIILAHQKnfdlvwcrgtlrekifepwmdsmrtrgcefldgrrvtdfiydeerccisdvvcgketysAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFdkkvtvpnvsnacsgfgdslaWTFFDLNKiydehkddsaTVIQADFyhanelmplkddQVVAKAVSYLSKCIKDFSTATVMDhkirrfpkslthffpgsykymmrgftsfpnlfmagdwittrhgswsqersyVTGLEAANRVVDylgdgsfskiipveedephiEALRTVNRRFNEIraqlplsdyflq
Flexible Loop (DISEMBL)
miqfgcserlyrNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREkifepwmdsmrtrgcefldgRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGDGSFSkiipveedephIEALRTVNRRFNEiraqlplsdyflq
Low Complexity Region (SEG)
MIQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGDGSFSKIIPVEEDEPHIEALRTVNRRFNEIRAQLPLSDYFLQ
Disordered region (IsUnstruct)
***FGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGDGSFSKIIPVEEDEPHIEALRTVNRRFNEIRAQLPL******
Disordered Region (DISOPRED)
********RLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGDGSFSKIIPVEEDEPHIEALRTVNRRFNEIRAQLPLSDYFLQ
Disordered Region (DISEMBL)
MIQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGDGSFSKIIPVEEDEPHIEALRTVNRRFNEIRAQLPLSDYFLQ
Disordered Region (DISPRO)
*****CSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGDGSFSKIIPVEEDEPHIEALRTVNRRFNEIRAQLPLSDYFLQ
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGDGSFSKIIPVEEDEPHIEALRTVNRRFNEIRAQLPLSDYFLQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	343	2.2.26 [Sep-21-2011]
P26294	474	15-cis-phytoene desaturas	yes	no	0.827	0.599	0.204	5e-09
P29273	472	Phytoene dehydrogenase OS	N/A	no	0.725	0.527	0.186	3e-08
P80093	582	15-cis-phytoene desaturas	N/A	no	0.734	0.432	0.190	2e-06
P49086	571	Phytoene dehydrogenase, c	N/A	no	0.734	0.441	0.198	7e-06
Q07356	566	15-cis-phytoene desaturas	yes	no	0.734	0.445	0.194	9e-06
Q0DUI8	578	Phytoene dehydrogenase, c	no	no	0.731	0.434	0.192	3e-05
A2XDA1	578	Phytoene dehydrogenase, c	N/A	no	0.731	0.434	0.192	3e-05
P28553	570	Phytoene dehydrogenase, c	yes	no	0.728	0.438	0.181	4e-05
Q40406	570	Phytoene dehydrogenase, c	N/A	no	0.728	0.438	0.193	5e-05
P28554	583	Phytoene dehydrogenase, c	N/A	no	0.734	0.432	0.183	0.0001

>sp|P26294|PDS_SYNE7 15-cis-phytoene desaturase OS=Synechococcus elongatus (strain PCC 7942) GN=pds PE=1 SV=1

 Score = 62.4 bits (150), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 61/299 (20%), Positives = 138/299 (46%), Gaps = 15/299 (5%)

Query: 8   ERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPW 67
           ER+   V   + +   F   ++ SA   L  L    L  +K   + +  G   E++ +P 
Sbjct: 162 ERVNDEVFIAMAKALNFIDPDEISATVVLTALNRF-LQEKKGSMMAFLDGAPPERLCQPI 220

Query: 68  MDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-----KETYSAGAVVLAVGISTLQE 122
           ++ ++ RG + L    + +F+ +++    +  + G     ++   A A V A+ +  L+ 
Sbjct: 221 VEHVQARGGDVLLNAPLKEFVLNDDSSVQAFRIAGIKGQEEQLIEADAYVSALPVDPLKL 280

Query: 123 LIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNK 182
           L+ ++       F ++  L  + V+++ LWFD+K+T  ++ +        L+  + D++ 
Sbjct: 281 LLPDAWKA-MPYFQQLDGLQGVPVINIHLWFDRKLT--DIDHLLFSRSPLLS-VYADMSN 336

Query: 183 IYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCI-KDFS---TATVMDHKI 238
              E++D   ++++  F  A + +   D+ ++A  ++ + K   + FS    A +  +KI
Sbjct: 337 TCREYEDPDRSMLELVFAPAKDWIGRSDEDILAATMAEIEKLFPQHFSGENPARLRKYKI 396

Query: 239 RRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVV 297
            + P S+    PG  +Y     +   N F+ GD+   R+ + S E + ++G   A  ++
Sbjct: 397 VKTPLSVYKATPGRQQYRPDQASPIANFFLTGDYTMQRYLA-SMEGAVLSGKLTAQAII 454

This enzyme converts phytoene into zeta-carotene via the intermediary of phytofluene by the symmetrical introduction of two double bonds at the C-11 and C-11' positions of phytoene. Also active with phytofluene and 1,2-epoxyphytoene as substrates.
Synechococcus elongatus (strain PCC 7942) (taxid: 1140)
EC: 1EC: .EC: 3EC: .EC: 5EC: .EC: 5

>sp|P29273|CRTI_SYNY3 Phytoene dehydrogenase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=pds PE=3 SV=2

 Score = 59.7 bits (143), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/263 (18%), Positives = 118/263 (44%), Gaps = 14/263 (5%)

Query: 44  LAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG- 102
           L  +    + +  G   E++ +P +D +  RG E    + + + + +E+      ++ G 
Sbjct: 197 LQEKNGSKMAFLDGAPPERLCQPLVDYITERGGEVHINKPLKEILLNEDGSVKGYLIRGL 256

Query: 103 ----KETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVT 158
                E  +A   V A+ +  L+ ++  +      EF ++  L  + V+++ LWFD+K+T
Sbjct: 257 DGAPDEVITADLYVSAMPVDPLKTMVP-APWREYPEFKQIQGLEGVPVINLHLWFDRKLT 315

Query: 159 VPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAV 218
             ++ +        L+  + D++    E+ D   ++++     A + +   D+++VA  +
Sbjct: 316 --DIDHLLFSRSPLLS-VYADMSNTCREYSDPDKSMLELVLAPAQDWIGKSDEEIVAATM 372

Query: 219 SYLSKCIKDF----STATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWIT 274
           + + +         + A ++   + + P+S+    PG         TS PN ++AGD+  
Sbjct: 373 AEIKQLFPQHFNGDNPARLLKSHVVKTPRSVYKATPGRQACRPDQRTSVPNFYLAGDFTM 432

Query: 275 TRHGSWSQERSYVTGLEAANRVV 297
            ++   S E + ++G + A  + 
Sbjct: 433 QKYLG-SMEGAVLSGKQCAQAIA 454

This enzyme converts phytoene into zeta-carotene via the intermediary of phytofluene by the symmetrical introduction of two double bonds at the C-11 and C-11' positions of phytoene.

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 9

EC: 9

EC: .

EC: -

>sp|P80093|PDS_CAPAN 15-cis-phytoene desaturase, chloroplastic/chromoplastic OS=Capsicum annuum GN=PDS PE=1 SV=1

 Score = 53.9 bits (128), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/262 (19%), Positives = 111/262 (42%), Gaps = 10/262 (3%)

Query: 44  LAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGK 103
           L  +    + +  G   E++  P ++ + ++G +     R+     +E+      ++   
Sbjct: 308 LQEKHGSKMAFLDGNPPERLCMPIVEHIESKGGQVRLNSRIKKIELNEDGSVKCFILNDG 367

Query: 104 ETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVS 163
            T    A V A  +   + L+          F K+  L  + V++V +WFD+K+   N S
Sbjct: 368 STIEGDAFVFATPVDIFKLLLPED-WKEIPYFQKLEKLVGVPVINVHIWFDRKLK--NTS 424

Query: 164 NACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSK 223
           +        L   + D++    E+ D + ++++  F  A E +   D +++   +  L+K
Sbjct: 425 DNLLFSRSPLLSVYADMSVTCKEYYDPNKSMLELVFAPAEEWVSRSDSEIIDATMKELAK 484

Query: 224 CIK-----DFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHG 278
                   D S A ++ + + + P+S+    PG     +   +     ++AGD+   ++ 
Sbjct: 485 LFPDEISADQSKAKILKYHVVKTPRSVYKTVPGCEPCRLLQRSPVEGFYLAGDYTKQKYL 544

Query: 279 SWSQERSYVTGLEAANRVV-DY 299
           + S E + ++G   A  +V DY
Sbjct: 545 A-SMEGAVLSGKLCAQAIVQDY 565

This enzyme converts phytoene into zeta-carotene via the intermediary of phytofluene by the symmetrical introduction of two double bonds at the C-11 and C-11' positions of phytoene. The favored substrate is 15-cis-phytoene. The zeta-carotene produced has a central C15-C15' double bond in the cis configuration and it requires isomerization before being recognized as substrate by ZDS, the next enzyme in the lycopene biosynthesis pathway.

Capsicum annuum (taxid: 4072)

EC: 1

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: 5

>sp|P49086|CRTI_MAIZE Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Zea mays GN=PDS1 PE=2 SV=1

 Score = 52.0 bits (123), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 52/262 (19%), Positives = 109/262 (41%), Gaps = 10/262 (3%)

Query: 44  LAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGK 103
           L  +    + +  G   E++  P +D +R+RG E     R+     + +       +   
Sbjct: 294 LQEKHGSKMAFLDGNPPERLCMPIVDHIRSRGGEVRLNSRIKKIELNPDGTVKHFALSDG 353

Query: 104 ETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVS 163
              +  A V A  +   + L+          F K+  L  + V++V +WFD+K+   N  
Sbjct: 354 TQITGDAYVCATPVDIFKLLVPQE-WSEITYFKKLEKLVGVPVINVHIWFDRKLN--NTY 410

Query: 164 NACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSK 223
           +       SL   + D++    E+ D + ++++  F  A+E +   D +++   +  L+K
Sbjct: 411 DHLLFSRSSLLSVYADMSVTCKEYYDPNRSMLELVFAPADEWIGRSDTEIIDATMEELAK 470

Query: 224 CIK-----DFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHG 278
                   D S A ++ + I + P+S+    P          +     ++AGD+   ++ 
Sbjct: 471 LFPDEIAADQSKAKILKYHIVKTPRSVYKTVPNCEPCRPLQRSPIEGFYLAGDYTKQKYL 530

Query: 279 SWSQERSYVTGLEAANRVV-DY 299
           + S E + ++G   A  +V DY
Sbjct: 531 A-SMEGAVLSGKLCAQSIVQDY 551

This enzyme converts phytoene into zeta-carotene via the intermediary of phytofluene by the symmetrical introduction of two double bonds at the C-11 and C-11' positions of phytoene.

Zea mays (taxid: 4577)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 9

EC: 9

EC: .

EC: -

>sp|Q07356|PDS_ARATH 15-cis-phytoene desaturase, chloroplastic/chromoplastic OS=Arabidopsis thaliana GN=PDS PE=1 SV=1

 Score = 51.6 bits (122), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 51/262 (19%), Positives = 110/262 (41%), Gaps = 10/262 (3%)

Query: 44  LAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGK 103
           L  +    + +  G   E++  P +D +R+ G E     R+     +++    S ++   
Sbjct: 290 LQEKHGSKMAFLDGNPPERLCMPVVDHIRSLGGEVQLNSRIKKIELNDDGTVKSFLLTNG 349

Query: 104 ETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVS 163
            T    A V A  +  L+ L+ +        F K+  L  + V++V +WFD+K+   N  
Sbjct: 350 STVEGDAYVFAAPVDILKLLLPDP-WKEIPYFKKLDKLVGVPVINVHIWFDRKLK--NTY 406

Query: 164 NACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSK 223
           +       +L   + D++    E+ D + ++++  F  A E +   D  ++   +  L K
Sbjct: 407 DHLLFSRSNLLSVYADMSLTCKEYYDPNRSMLELVFAPAEEWISRTDSDIIDATMKELEK 466

Query: 224 CIK-----DFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHG 278
                   D S A ++ + + + P+S+    P          +     ++AGD+   ++ 
Sbjct: 467 LFPDEISADQSKAKILKYHVVKTPRSVYKTIPNCEPCRPLQRSPIEGFYLAGDYTKQKYL 526

Query: 279 SWSQERSYVTGLEAANRVV-DY 299
           + S E + ++G   +  +V DY
Sbjct: 527 A-SMEGAVLSGKFCSQSIVQDY 547

This enzyme converts phytoene into zeta-carotene via the intermediary of phytofluene by the symmetrical introduction of two double bonds at the C-11 and C-11' positions of phytoene. The zeta-carotene produced has a central C15-C15' double bond in the cis configuration and it requires isomerization before being recognized as substrate by ZDS, the next enzyme in the lycopene biosynthesis pathway.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: 5

>sp|Q0DUI8|CRTI_ORYSJ Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Oryza sativa subsp. japonica GN=PDS PE=2 SV=2

 Score = 49.7 bits (117), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/260 (19%), Positives = 107/260 (41%), Gaps = 9/260 (3%)

Query: 44  LAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGK 103
           L  +    + +  G   E++  P +D +R+ G E     R+     + +       +   
Sbjct: 302 LQEKHGSKMAFLDGNPPERLCMPIVDHVRSLGGEVRLNSRIQKIELNPDGTVKHFALTDG 361

Query: 104 ETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVS 163
              +  A V A  +  L+ L+          F K+  L  + V++V +WFD+K+   N  
Sbjct: 362 TQITGDAYVFATPVDILKLLVPQE-WKEISYFKKLEKLVGVPVINVHIWFDRKLK--NTY 418

Query: 164 NACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSK 223
           +       SL   + D++    E+ D + ++++  F  A E +   D +++   +  L+K
Sbjct: 419 DHLLFSRSSLLSVYADMSVTCKEYYDPNRSMLELVFAPAEEWVGRSDTEIIEATMQELAK 478

Query: 224 CIK-----DFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHG 278
                   D S A ++ + + + P+S+    P          +     ++AGD+   ++ 
Sbjct: 479 LFPDEIAADQSKAKILKYHVVKTPRSVYKTIPDCEPCRPLQRSPIEGFYLAGDYTKQKYL 538

Query: 279 SWSQERSYVTGLEAANRVVD 298
           + S E + ++G   A  VV+
Sbjct: 539 A-SMEGAVLSGKLCAQSVVE 557

This enzyme converts phytoene into zeta-carotene via the intermediary of phytofluene by the symmetrical introduction of two double bonds at the C-11 and C-11' positions of phytoene.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 9

EC: 9

EC: .

EC: -

>sp|A2XDA1|CRTI_ORYSI Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Oryza sativa subsp. indica GN=PDS1 PE=2 SV=2

 Score = 49.7 bits (117), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/260 (19%), Positives = 107/260 (41%), Gaps = 9/260 (3%)

Query: 44  LAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGK 103
           L  +    + +  G   E++  P +D +R+ G E     R+     + +       +   
Sbjct: 302 LQEKHGSKMAFLDGNPPERLCMPIVDHVRSLGGEVRLNSRIQKIELNPDGTVKHFALTDG 361

Query: 104 ETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVS 163
              +  A V A  +  L+ L+          F K+  L  + V++V +WFD+K+   N  
Sbjct: 362 TQITGDAYVFATPVDILKLLVPQE-WKEISYFKKLEKLVGVPVINVHIWFDRKLK--NTY 418

Query: 164 NACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSK 223
           +       SL   + D++    E+ D + ++++  F  A E +   D +++   +  L+K
Sbjct: 419 DHLLFSRSSLLSVYADMSVTCKEYYDPNRSMLELVFAPAEEWVGRSDTEIIEATMQELAK 478

Query: 224 CIK-----DFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHG 278
                   D S A ++ + + + P+S+    P          +     ++AGD+   ++ 
Sbjct: 479 LFPDEIAADQSKAKILKYHVVKTPRSVYKTIPDCEPCRPLQRSPIEGFYLAGDYTKQKYL 538

Query: 279 SWSQERSYVTGLEAANRVVD 298
           + S E + ++G   A  VV+
Sbjct: 539 A-SMEGAVLSGKLCAQSVVE 557

This enzyme converts phytoene into zeta-carotene via the intermediary of phytofluene by the symmetrical introduction of two double bonds at the C-11 and C-11' positions of phytoene.

Oryza sativa subsp. indica (taxid: 39946)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 9

EC: 9

EC: .

EC: -

>sp|P28553|CRTI_SOYBN Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Glycine max GN=PDS1 PE=2 SV=1

 Score = 49.3 bits (116), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/259 (18%), Positives = 110/259 (42%), Gaps = 9/259 (3%)

Query: 44  LAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGK 103
           L  +    + +  G   E++  P +D +++ G E     R+     +++    S ++   
Sbjct: 296 LQEKHGSKMAFLDGNPPERLCMPIVDYIQSLGGEVHLNSRIQKIELNDDGTVKSFLLNNG 355

Query: 104 ETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVS 163
           +     A V A  +  L+ L+ ++       F ++  L  + V++V +WFD+K+   N  
Sbjct: 356 KVMEGDAYVFATPVDILKLLLPDN-WKGIPYFQRLDKLVGVPVINVHIWFDRKLK--NTY 412

Query: 164 NACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSK 223
           +        L   + D++    E+   + ++++  F  A E +   DD ++   ++ L+K
Sbjct: 413 DHLLFSRSPLLSVYADMSVTCKEYYSPNQSMLELVFAPAEEWISRSDDDIIQATMTELAK 472

Query: 224 CIK-----DFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHG 278
                   D S A ++ + + + P+S+    P          +     ++AGD+   ++ 
Sbjct: 473 LFPDEISADQSKAKILKYHVVKTPRSVYKTVPNCEPCRPIQRSPIEGFYLAGDYTKQKYL 532

Query: 279 SWSQERSYVTGLEAANRVV 297
           + S E + ++G   A  +V
Sbjct: 533 A-SMEGAVLSGKLCAQAIV 550

This enzyme converts phytoene into zeta-carotene via the intermediary of phytofluene by the symmetrical introduction of two double bonds at the C-11 and C-11' positions of phytoene.

Glycine max (taxid: 3847)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 9

EC: 9

EC: .

EC: -

>sp|Q40406|CRTI_NARPS Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Narcissus pseudonarcissus GN=PDS1 PE=1 SV=1

 Score = 48.9 bits (115), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 51/264 (19%), Positives = 111/264 (42%), Gaps = 14/264 (5%)

Query: 44  LAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGK 103
           L  +    + +  G   E++  P +D +++ G       R+     + +      V+   
Sbjct: 295 LQEKHGSKMAFLDGNPPERLCMPIVDHIQSLGGRAQLNSRLQKIELNPDGTVKHFVLGNG 354

Query: 104 ETYSAGAVVLAVGISTLQELIKNSILCNRE--EFLKVLNLASIDVVSVKLWFDKKVTVPN 161
              +  A V+A  +  L+ L+       RE   F K+  L  + V++V +WFD+K+   N
Sbjct: 355 NIITGDAYVVAAPVDILKLLLPQEW---REIPYFQKLDKLVGVPVINVHIWFDRKLK--N 409

Query: 162 VSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYL 221
             +        L   + D++    E+ D + ++++  F  A E +   D +++ + +  L
Sbjct: 410 TYDHLLFTRSPLLSVYADMSVTCKEYYDPNRSMLELVFAPAEEWISRSDSEIIERTMKEL 469

Query: 222 SKCIK-----DFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTR 276
           +K        D S A ++ + + + P+S+    P          +     ++AGD+   +
Sbjct: 470 AKLFPDEIAADQSKAKILKYHVVKTPRSVYKTIPDCEPCRPLQRSPIEGFYLAGDYTNQK 529

Query: 277 HGSWSQERSYVTGLEAANRVV-DY 299
           + + S E + ++G   A  +V DY
Sbjct: 530 YLA-SMEGAVLSGKLCAQSIVQDY 552

This enzyme converts phytoene into zeta-carotene via the intermediary of phytofluene by the symmetrical introduction of two double bonds at the C-11 and C-11' positions of phytoene.

Narcissus pseudonarcissus (taxid: 39639)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 9

EC: 9

EC: .

EC: -

>sp|P28554|CRTI_SOLLC Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Solanum lycopersicum GN=PDS PE=2 SV=1

 Score = 47.8 bits (112), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/262 (18%), Positives = 109/262 (41%), Gaps = 10/262 (3%)

Query: 44  LAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGK 103
           L  +    + +  G   E++  P ++ + ++G +     R+     +E+    S ++   
Sbjct: 309 LQEKHGSKMAFLDGNPPERLCMPIVEHIESKGGQVRLNSRIKKIELNEDGSVKSFILSDG 368

Query: 104 ETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVS 163
                 A V A  +   + L+          F K+  L  + V++V +WFD+K+   N  
Sbjct: 369 SAIEGDAFVFAAPVDIFKLLLPED-WKEIPYFQKLEKLVGVPVINVHIWFDRKLK--NTY 425

Query: 164 NACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSK 223
           +       SL   + D++    E+ + + ++++  F  A E +   D +++   +  L+ 
Sbjct: 426 DHLLFSRSSLLSVYADMSVTCKEYYNPNQSMLELVFAPAEEWISRSDSEIIDATMKELAT 485

Query: 224 CIK-----DFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHG 278
                   D S A ++ + + + P+S+    PG         +     ++AGD+   ++ 
Sbjct: 486 LFPDEISADQSKAKILKYHVVKTPRSVYKTVPGCEPCRPLQRSPIEGFYLAGDYTKQKYL 545

Query: 279 SWSQERSYVTGLEAANRVV-DY 299
           + S E + ++G   A  +V DY
Sbjct: 546 A-SMEGAVLSGKLCAQAIVQDY 566

This enzyme converts phytoene into zeta-carotene via the intermediary of phytofluene by the symmetrical introduction of two double bonds at the C-11 and C-11' positions of phytoene.

Solanum lycopersicum (taxid: 4081)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 9

EC: 9

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	343
255560501	530	Phytoene dehydrogenase, putative [Ricinu	0.991	0.641	0.739	1e-152
359474834	530	PREDICTED: phytoene dehydrogenase-like [	0.991	0.641	0.727	1e-148
449458684	533	PREDICTED: phytoene dehydrogenase-like [	0.991	0.637	0.662	1e-140
297744581	531	unnamed protein product [Vitis vinifera]	0.991	0.640	0.690	1e-140
148910773	574	unknown [Picea sitchensis]	0.991	0.592	0.636	1e-136
168030354	532	predicted protein [Physcomitrella patens	0.991	0.639	0.545	1e-119
38345844	529	OSJNBa0084K11.8 [Oryza sativa Japonica G	0.988	0.640	0.567	1e-118
116311132	529	B0103C08-B0602B01.15 [Oryza sativa Indic	0.988	0.640	0.567	1e-118
302804622	527	hypothetical protein SELMODRAFT_180688 [	0.956	0.622	0.565	1e-115
302753308	530	hypothetical protein SELMODRAFT_74261 [S	0.962	0.622	0.558	1e-115

>gi|255560501|ref|XP_002521265.1| Phytoene dehydrogenase, putative [Ricinus communis] gi|223539533|gb|EEF41121.1| Phytoene dehydrogenase, putative [Ricinus communis]

 Score =  544 bits (1401), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 252/341 (73%), Positives = 292/341 (85%), Gaps = 1/341 (0%)

Query: 3   QFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREK 62
           QFGCSE+LYRNV GPL+QVGLFAPAEQCSAAATLGILY+I LAHQK+FD+VWCRGT+REK
Sbjct: 190 QFGCSEKLYRNVFGPLLQVGLFAPAEQCSAAATLGILYYISLAHQKDFDMVWCRGTIREK 249

Query: 63  IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQE 122
           IF PWMDS+RT+GC FLDG +V DFI +EE  CI +VVC  ET +A AV+LAVGIS +QE
Sbjct: 250 IFSPWMDSLRTKGCRFLDGEKVIDFIINEETSCIEEVVCSNETINADAVILAVGISKVQE 309

Query: 123 LIKNSI-LCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLN 181
           L+KNS  L  REEFLKVLNLA ID+++ KL  D+KV + + SNACSGF DS +WTFFDLN
Sbjct: 310 LVKNSAALSTREEFLKVLNLAGIDILTCKLQLDRKVNLAHASNACSGFDDSFSWTFFDLN 369

Query: 182 KIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRF 241
            ++DEHKD+  T +QADFYHANEL+PL D+ VV K +SYLSKCIKDF  A V+D +I RF
Sbjct: 370 ALHDEHKDNQVTTLQADFYHANELLPLTDELVVTKTMSYLSKCIKDFENAVVIDKEISRF 429

Query: 242 PKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG 301
           PKSLTHFFPGSYK+MMRG TSFPNLFMAGDWI TRHGSWSQE+SYVTGLEAANRVVD+L 
Sbjct: 430 PKSLTHFFPGSYKHMMRGSTSFPNLFMAGDWIITRHGSWSQEKSYVTGLEAANRVVDFLE 489

Query: 302 DGSFSKIIPVEEDEPHIEALRTVNRRFNEIRAQLPLSDYFL 342
           +GSF+KII VEEDEPH++ALR+VNRRFNEI  Q+PL  YFL
Sbjct: 490 EGSFAKIIAVEEDEPHVQALRSVNRRFNEISDQIPLFGYFL 530

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359474834|ref|XP_002278046.2| PREDICTED: phytoene dehydrogenase-like [Vitis vinifera]

 Score =  529 bits (1363), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 248/341 (72%), Positives = 291/341 (85%), Gaps = 1/341 (0%)

Query: 3   QFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREK 62
           QFG S+RLY++V  PL+QVGLFAPAEQCSAAATLGILY+I+LAHQK+FD VWCRGT+R+K
Sbjct: 189 QFGFSQRLYQDVFDPLLQVGLFAPAEQCSAAATLGILYYIVLAHQKDFDFVWCRGTVRDK 248

Query: 63  IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQE 122
           IF+PWMD MR  GCEFL+ RRVTDF+++EE  CIS+VVCG+E Y+A AVVLAVGISTLQ+
Sbjct: 249 IFKPWMDYMRANGCEFLESRRVTDFLFNEETGCISEVVCGREKYTADAVVLAVGISTLQD 308

Query: 123 LIKNSI-LCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLN 181
           +IKNS  L  REEFLKVLNLA IDV++VKL FD+KV +P   N CSGF DS  WT+FDLN
Sbjct: 309 IIKNSAALSTREEFLKVLNLAGIDVLTVKLQFDRKVNIPKAVNTCSGFDDSCGWTYFDLN 368

Query: 182 KIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRF 241
            I+DE+KDD  TV+QA+FYHANEL+ LKD+ + AK +  LSK IKD   A+V+  +I RF
Sbjct: 369 AIHDEYKDDPVTVLQANFYHANELLLLKDELIAAKVMHQLSKYIKDLENASVVGQEIERF 428

Query: 242 PKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG 301
           PKSLTHFFPGSYKYMMRG TSFPNLFMAGDWI TRHGSW QE+SYVTGLEAANRVVDYL 
Sbjct: 429 PKSLTHFFPGSYKYMMRGSTSFPNLFMAGDWIVTRHGSWLQEKSYVTGLEAANRVVDYLE 488

Query: 302 DGSFSKIIPVEEDEPHIEALRTVNRRFNEIRAQLPLSDYFL 342
           +GSF+KIIPVEEDEPHI+ALR +NR  N+++AQLP SDYFL
Sbjct: 489 EGSFAKIIPVEEDEPHIQALRNLNRNLNDVKAQLPWSDYFL 529

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458684|ref|XP_004147077.1| PREDICTED: phytoene dehydrogenase-like [Cucumis sativus] gi|449518113|ref|XP_004166088.1| PREDICTED: phytoene dehydrogenase-like [Cucumis sativus]

 Score =  504 bits (1297), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 226/341 (66%), Positives = 284/341 (83%), Gaps = 1/341 (0%)

Query: 3   QFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREK 62
           QFGCSE+LY +++ PL+QVGL+APAEQCSAAATLGILY+ ILAHQ +F+LVWCRGT +E 
Sbjct: 193 QFGCSEKLYSSILNPLLQVGLYAPAEQCSAAATLGILYYTILAHQNDFNLVWCRGTAKEM 252

Query: 63  IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQE 122
           IF+PW+D + ++GC F+  R++TD   D+E  C+SD++CG+E Y A A+V AVGIS LQE
Sbjct: 253 IFQPWIDLLESKGCRFVGSRKITDVTVDDETNCLSDILCGRERYEADAIVFAVGISVLQE 312

Query: 123 LIKNSI-LCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLN 181
           LI+NS  L  +EEF+KVLNL S+D+++VKLWFD+KV +P  SN+CS   +S  W+FF+LN
Sbjct: 313 LIRNSAALYTKEEFVKVLNLRSVDLLTVKLWFDRKVNIPTASNSCSTLDNSFGWSFFNLN 372

Query: 182 KIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRF 241
            I DE+KD+S TV+QADFYHA EL+PL D+ +V K  SYLS CIKDF  A V+  +I RF
Sbjct: 373 AIQDEYKDESVTVLQADFYHAIELLPLNDEAIVEKVKSYLSTCIKDFENAIVVKKEIGRF 432

Query: 242 PKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG 301
           P+SLTHFFPGSYKYMMRGFTSFPN+FMAGDWI  RHGSWSQE+SYVTGLEAANRVVD+L 
Sbjct: 433 PESLTHFFPGSYKYMMRGFTSFPNVFMAGDWIINRHGSWSQEKSYVTGLEAANRVVDFLE 492

Query: 302 DGSFSKIIPVEEDEPHIEALRTVNRRFNEIRAQLPLSDYFL 342
           +GSF+KI+PVEEDEPH+EALR +NRR +EIR+QLP + +FL
Sbjct: 493 EGSFAKIVPVEEDEPHVEALRGLNRRIDEIRSQLPFNGFFL 533

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744581|emb|CBI37843.3| unnamed protein product [Vitis vinifera]

 Score =  503 bits (1296), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 236/342 (69%), Positives = 281/342 (82%), Gaps = 2/342 (0%)

Query: 3   QFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREK 62
           QFG S+RLY++V  PL+QVGLFAPAEQCSAAATLGILY+I+LAHQK+FD VWCRGT+R+K
Sbjct: 189 QFGFSQRLYQDVFDPLLQVGLFAPAEQCSAAATLGILYYIVLAHQKDFDFVWCRGTVRDK 248

Query: 63  IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQE 122
           IF+PWMD MR  GCEFL+ RRVTDF+++EE  CIS+VVCG+E Y+A A V+    S ++ 
Sbjct: 249 IFKPWMDYMRANGCEFLESRRVTDFLFNEETGCISEVVCGREKYTADAPVIMFSTSLMEN 308

Query: 123 --LIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDL 180
             L   + L  REEFLKVLNLA IDV++VKL FD+KV +P   N CSGF DS  WT+FDL
Sbjct: 309 HSLTLLAALSTREEFLKVLNLAGIDVLTVKLQFDRKVNIPKAVNTCSGFDDSCGWTYFDL 368

Query: 181 NKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRR 240
           N I+DE+KDD  TV+QA+FYHANEL+ LKD+ + AK +  LSK IKD   A+V+  +I R
Sbjct: 369 NAIHDEYKDDPVTVLQANFYHANELLLLKDELIAAKVMHQLSKYIKDLENASVVGQEIER 428

Query: 241 FPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYL 300
           FPKSLTHFFPGSYKYMMRG TSFPNLFMAGDWI TRHGSW QE+SYVTGLEAANRVVDYL
Sbjct: 429 FPKSLTHFFPGSYKYMMRGSTSFPNLFMAGDWIVTRHGSWLQEKSYVTGLEAANRVVDYL 488

Query: 301 GDGSFSKIIPVEEDEPHIEALRTVNRRFNEIRAQLPLSDYFL 342
            +GSF+KIIPVEEDEPHI+ALR +NR  N+++AQLP SDYFL
Sbjct: 489 EEGSFAKIIPVEEDEPHIQALRNLNRNLNDVKAQLPWSDYFL 530

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|148910773|gb|ABR18453.1| unknown [Picea sitchensis]

 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 217/341 (63%), Positives = 277/341 (81%), Gaps = 1/341 (0%)

Query: 3   QFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREK 62
           QFGCSER+Y++   P++ VGLFAP EQCSAAA+LG+LY+ IL HQ++FD+VWCRGT+ EK
Sbjct: 234 QFGCSERVYQDAFNPMLLVGLFAPGEQCSAAASLGMLYYFILGHQQDFDVVWCRGTVGEK 293

Query: 63  IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQE 122
           IF+PW++ M+TRGC+FL  +RVTDF+ DE    IS V CG E ++A AV+ AVGI+ LQ 
Sbjct: 294 IFKPWIEFMKTRGCQFLANKRVTDFLLDENTGAISAVACGDEIFTADAVIFAVGITALQR 353

Query: 123 LIKNS-ILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLN 181
           ++ NS +L  REEFL VLNL +IDV++V++W D+KV +P  SNAC GF DS  WTFFDL 
Sbjct: 354 IVYNSPVLQQREEFLNVLNLGAIDVLAVRIWLDRKVDIPKPSNACFGFDDSTGWTFFDLT 413

Query: 182 KIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRF 241
            ++DE+KD+  TV++ADFYHAN+ +PLKDDQ+V K  +YL+ CI++F  A V+D  + RF
Sbjct: 414 ALHDEYKDEPGTVVEADFYHANQFLPLKDDQIVEKVKAYLTTCIEEFGKANVVDQAVVRF 473

Query: 242 PKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG 301
           PKS+THF PGSY+YMMRG TS PNLFMAGDW+ TRHGSWSQE++YVTGLEAANRVVDY G
Sbjct: 474 PKSVTHFSPGSYRYMMRGNTSIPNLFMAGDWVITRHGSWSQEKAYVTGLEAANRVVDYFG 533

Query: 302 DGSFSKIIPVEEDEPHIEALRTVNRRFNEIRAQLPLSDYFL 342
           +G F+KI+PVE+DEPH++ LR +NR FNEIR QLPLSD FL
Sbjct: 534 EGQFAKIVPVEDDEPHVQELRRLNRVFNEIRTQLPLSDNFL 574

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|168030354|ref|XP_001767688.1| predicted protein [Physcomitrella patens subsp. patens] gi|162681008|gb|EDQ67439.1| predicted protein [Physcomitrella patens subsp. patens]

 Score =  432 bits (1112), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 186/341 (54%), Positives = 257/341 (75%), Gaps = 1/341 (0%)

Query: 3   QFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREK 62
           +FGCSER+Y++   P++ VGLFAP E CSAAA LG+LY+ ILAHQ +FD+VWCRGT+ E 
Sbjct: 192 EFGCSERVYKDAFNPMLLVGLFAPGELCSAAACLGMLYYFILAHQPDFDVVWCRGTVGEM 251

Query: 63  IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQE 122
           IF+PW+ +M+  GC FL  +RV+D   DE    ++ V+CG+E + A AV+ +VGIS +Q+
Sbjct: 252 IFKPWVAAMQNSGCRFLSNKRVSDLELDEATGSVTGVLCGEERFPADAVIFSVGISAMQK 311

Query: 123 LIKNS-ILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLN 181
           ++ NS +L  REEF+   NL ++D+++V+LW D+K+ +   SNAC GF  +  WTFFDLN
Sbjct: 312 IVPNSKVLRTREEFVNTANLGAVDILAVRLWLDRKIPIKMPSNACFGFDTTTGWTFFDLN 371

Query: 182 KIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRF 241
           +++DE+KD+  TV++ADFYHAN+ +PL DDQ+V K + YL+ CI +F  A V+D  + RF
Sbjct: 372 ELHDEYKDEPGTVVEADFYHANQFLPLSDDQIVKKVMDYLAVCIPEFGNANVVDQAVVRF 431

Query: 242 PKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG 301
           PK++THFFPGSY+Y+MRG TSFPN++MAGDWI  RHGSWSQE+++VTGLEAANRVVD   
Sbjct: 432 PKAVTHFFPGSYQYLMRGTTSFPNVYMAGDWIVNRHGSWSQEKAFVTGLEAANRVVDQFE 491

Query: 302 DGSFSKIIPVEEDEPHIEALRTVNRRFNEIRAQLPLSDYFL 342
            G  + IIPV+ DEPH++ LR VN     +  QLP ++YFL
Sbjct: 492 QGELASIIPVDADEPHVQELRRVNETAKALVKQLPFANYFL 532

Source: Physcomitrella patens subsp. patens

Species: Physcomitrella patens

Genus: Physcomitrella

Family: Funariaceae

Order: Funariales

Class: Bryopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|38345844|emb|CAE01845.2| OSJNBa0084K11.8 [Oryza sativa Japonica Group]

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 193/340 (56%), Positives = 261/340 (76%), Gaps = 1/340 (0%)

Query: 4   FGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKI 63
           FGCS++LY+ +  P +Q  LFAP EQCSAAATLG+ Y+ +L+HQ+N D + CRG + + I
Sbjct: 190 FGCSQKLYKEIFQPAIQAALFAPGEQCSAAATLGMSYYYMLSHQENSDFLLCRGEVEDII 249

Query: 64  FEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQEL 123
           F PW+ S+  +G +F   R  T    +++  CIS +VCG+E + A A VLA G+S+LQ +
Sbjct: 250 FSPWLKSLELQGLKFHGNRVPTSLAINKDTACISGIVCGEEVHEADAFVLANGLSSLQYI 309

Query: 124 IKNS-ILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNK 182
           IKNS  L +R+EF+ +L+L++IDVVS+KLWFDKK+T+P V+N CSGF D   WTFFDL  
Sbjct: 310 IKNSPFLQSRQEFVNLLHLSTIDVVSIKLWFDKKITIPKVANVCSGFDDPSRWTFFDLTS 369

Query: 183 IYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFP 242
           IYD++ D S T+++A+FY+A+ L+PL D+Q+V++A S+L KCI+DF  ATV+   +RR P
Sbjct: 370 IYDDYADKSTTIVEAEFYNASHLLPLNDEQIVSEASSHLIKCIQDFEEATVIQQLVRRSP 429

Query: 243 KSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGD 302
           KS  HF PGSYKY +RG T+ PNLF+AGDWI  RHGS+S+E++YVTGLEAANRVVDYLGD
Sbjct: 430 KSTMHFLPGSYKYTVRGSTTLPNLFIAGDWIVNRHGSFSKEKAYVTGLEAANRVVDYLGD 489

Query: 303 GSFSKIIPVEEDEPHIEALRTVNRRFNEIRAQLPLSDYFL 342
           G F+KII VEEDEPHIE  R +NRR NE++ Q+P S++FL
Sbjct: 490 GDFAKIIAVEEDEPHIETARNLNRRANELKTQIPFSEFFL 529

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116311132|emb|CAH68058.1| B0103C08-B0602B01.15 [Oryza sativa Indica Group]

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 193/340 (56%), Positives = 261/340 (76%), Gaps = 1/340 (0%)

Query: 4   FGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKI 63
           FGCS++LY+ +  P +QV LFAP EQCSAAATLG+LY+ +L+HQ+N D + CRG + + I
Sbjct: 190 FGCSQKLYKEIFQPAIQVALFAPGEQCSAAATLGMLYYYMLSHQENSDFLLCRGEVEDII 249

Query: 64  FEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQEL 123
           F PW+ S+  +G +F   R  T    +++  CIS +VCG+E + A A VLA G+S+LQ +
Sbjct: 250 FSPWLKSLELQGLKFHGNRVPTSLAINKDTACISGIVCGEEVHEADAFVLANGLSSLQYI 309

Query: 124 IKNS-ILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNK 182
           IKNS  L +R+EF+ +L+L++IDVVS+KLWFDKK+T+P V+N CSGF D   WTFFDL  
Sbjct: 310 IKNSPFLQSRQEFVNLLHLSTIDVVSIKLWFDKKITIPKVANVCSGFDDPSGWTFFDLTS 369

Query: 183 IYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFP 242
           IYD++ D S T+++A+FY+A+ L+PL D+Q+V++A S+L KCI+DF  ATV+   +RR P
Sbjct: 370 IYDDYADKSTTIVEAEFYNASHLLPLNDEQIVSEASSHLIKCIQDFEEATVIQQLVRRSP 429

Query: 243 KSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGD 302
           KS  HF PGSYKY +RG T+  NLF+AGDWI  RHGS+S+E++YVTGLEAANRVVDY GD
Sbjct: 430 KSTMHFLPGSYKYTVRGSTTLTNLFIAGDWIVNRHGSFSKEKAYVTGLEAANRVVDYFGD 489

Query: 303 GSFSKIIPVEEDEPHIEALRTVNRRFNEIRAQLPLSDYFL 342
           G F+KII VEEDEPHIE  R +NRR NE++ Q+P S++FL
Sbjct: 490 GDFAKIIAVEEDEPHIETARNLNRRANELKTQIPFSEFFL 529

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302804622|ref|XP_002984063.1| hypothetical protein SELMODRAFT_180688 [Selaginella moellendorffii] gi|300148415|gb|EFJ15075.1| hypothetical protein SELMODRAFT_180688 [Selaginella moellendorffii]

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 186/329 (56%), Positives = 250/329 (75%), Gaps = 1/329 (0%)

Query: 3   QFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREK 62
            +GCSER+Y++   P++ VGLFAP EQCSAAATLG+LY+ ILAHQ +FD+VWCRGT+ EK
Sbjct: 194 NYGCSERVYKDAFNPMLLVGLFAPGEQCSAAATLGMLYYFILAHQSDFDVVWCRGTVGEK 253

Query: 63  IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQE 122
           IF+PW++ +  RGC FL G++VTD   +E    +S V CG E ++A AV+ +VG++ +Q 
Sbjct: 254 IFKPWLEVLNARGCRFLSGKKVTDLTINEPTGEVSGVRCGNELFNADAVIFSVGVTAMQR 313

Query: 123 LIKNS-ILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLN 181
           ++++S  L   EEFL + NL +ID++ V+LW D+KV + + SNAC GF ++  WTFFDLN
Sbjct: 314 IVESSPALQQSEEFLAIQNLGAIDILGVRLWLDRKVDINHPSNACFGFDETTGWTFFDLN 373

Query: 182 KIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRF 241
            ++DE+KD+  TV++ADFYHAN+ +PL D+Q+V K V+YL+KCI +F+ A V+D  + RF
Sbjct: 374 ALHDEYKDEKGTVVEADFYHANQFLPLSDNQIVKKVVTYLAKCIPEFAAAEVVDQAVVRF 433

Query: 242 PKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG 301
            K++THF PGSY++MMRG TSFPNLFMAGDWI TRHGSWSQE++YVTGLEAAN VV  L 
Sbjct: 434 RKAVTHFSPGSYQHMMRGTTSFPNLFMAGDWIITRHGSWSQEKAYVTGLEAANNVVKLLN 493

Query: 302 DGSFSKIIPVEEDEPHIEALRTVNRRFNE 330
            G  +KIIPVE DE HI  LR +N    E
Sbjct: 494 QGKAAKIIPVEPDEAHITELRRINTLVQE 522

Source: Selaginella moellendorffii

Species: Selaginella moellendorffii

Genus: Selaginella

Family: Selaginellaceae

Order: Selaginellales

Class: Isoetopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302753308|ref|XP_002960078.1| hypothetical protein SELMODRAFT_74261 [Selaginella moellendorffii] gi|300171017|gb|EFJ37617.1| hypothetical protein SELMODRAFT_74261 [Selaginella moellendorffii]

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 185/331 (55%), Positives = 251/331 (75%), Gaps = 1/331 (0%)

Query: 3   QFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREK 62
            +GCSER+Y++   P++ VGLFAP EQCSAAATLG+LY+ ILAHQ +FD+VWCRGT+ EK
Sbjct: 194 NYGCSERVYKDAFNPMLLVGLFAPGEQCSAAATLGMLYYFILAHQSDFDVVWCRGTVGEK 253

Query: 63  IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQE 122
           IF+PW++ +  RGC FL G++VTD   +E    +S V CG E ++A AV+ +VG++ +Q 
Sbjct: 254 IFKPWLEVLNARGCRFLSGKKVTDLTINEPTGEVSGVRCGNELFNADAVIFSVGVTAMQR 313

Query: 123 LIKNS-ILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLN 181
           ++++S  L   EEFL + NL +ID++ V+LW D+KV + + SNAC GF ++  WTFFDLN
Sbjct: 314 IVESSPALQQSEEFLDIQNLGAIDILGVRLWLDRKVDINHPSNACFGFDETTGWTFFDLN 373

Query: 182 KIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRF 241
            ++DE+KD+  TV++ADFYHAN+ +PL DDQ+V K ++YL+KCI +F+ A V+D  + RF
Sbjct: 374 ALHDEYKDEKGTVVEADFYHANQFLPLSDDQIVKKVMTYLAKCIPEFAAAEVVDQAVVRF 433

Query: 242 PKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG 301
            K++THF PGSY++MMRG TSFPNLFMAGDWI TRHGSWSQE++YVTGLEAAN VV  L 
Sbjct: 434 RKAVTHFSPGSYQHMMRGTTSFPNLFMAGDWIITRHGSWSQEKAYVTGLEAANNVVKLLN 493

Query: 302 DGSFSKIIPVEEDEPHIEALRTVNRRFNEIR 332
            G  +KIIPVE DE HI  LR ++    E +
Sbjct: 494 QGKAAKIIPVEPDEAHITELRRISTLVQESK 524

Source: Selaginella moellendorffii

Species: Selaginella moellendorffii

Genus: Selaginella

Family: Selaginellaceae

Order: Selaginellales

Class: Isoetopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	343
TAIR|locus:2129515	566	PDS3 "phytoene desaturase 3" [	0.845	0.512	0.196	5.1e-05

TAIR|locus:2129515 PDS3 "phytoene desaturase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 127 (49.8 bits), Expect = 5.1e-05, P = 5.1e-05
 Identities = 59/301 (19%), Positives = 123/301 (40%)

Query:     5 GCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIF 64
             G  ER+   V   + +   F   ++ S    L I     L  +    + +  G   E++ 
Sbjct:   252 GVPERVTDEVFIAMSKALNFINPDELSMQCIL-IALNRFLQEKHGSKMAFLDGNPPERLC 310

Query:    65 EPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELI 124
              P +D +R+ G E     R+     +++    S ++    T    A V A  +  L+ L+
Sbjct:   311 MPVVDHIRSLGGEVQLNSRIKKIELNDDGTVKSFLLTNGSTVEGDAYVFAAPVDILKLLL 370

Query:   125 KNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIY 184
              +        F K+  L  + V++V +WFD+K+   N  +       +L   + D++   
Sbjct:   371 PDPWK-EIPYFKKLDKLVGVPVINVHIWFDRKLK--NTYDHLLFSRSNLLSVYADMSLTC 427

Query:   185 DEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKDF-----STATVMDHKIR 239
              E+ D + ++++  F  A E +   D  ++   +  L K   D      S A ++ + + 
Sbjct:   428 KEYYDPNRSMLELVFAPAEEWISRTDSDIIDATMKELEKLFPDEISADQSKAKILKYHVV 487

Query:   240 RFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVV-D 298
             + P+S+    P          +     ++AGD+   ++ + S E + ++G   +  +V D
Sbjct:   488 KTPRSVYKTIPNCEPCRPLQRSPIEGFYLAGDYTKQKYLA-SMEGAVLSGKFCSQSIVQD 546

Query:   299 Y 299
             Y
Sbjct:   547 Y 547


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.138   0.427    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      343       343   0.00096  116 3  11 22  0.47    33
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  618 (66 KB)
  Total size of DFA:  253 KB (2136 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  28.28u 0.08s 28.36t   Elapsed:  00:00:02
  Total cpu time:  28.28u 0.08s 28.36t   Elapsed:  00:00:02
  Start:  Sat May 11 06:55:19 2013   End:  Sat May 11 06:55:21 2013

GO:0009507 "chloroplast" evidence=ISM;IDA;TAS

GO:0009536 "plastid" evidence=IEA

GO:0016117 "carotenoid biosynthetic process" evidence=IEA;IDA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016705 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

GO:0016120 "carotene biosynthetic process" evidence=IDA

GO:0016166 "phytoene dehydrogenase activity" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	343
COG3349	485	COG3349, COG3349, Uncharacterized conserved protei	3e-53
TIGR03467	411	TIGR03467, HpnE, squalene-associated FAD-dependent	3e-10
pfam01593	444	pfam01593, Amino_oxidase, Flavin containing amine	7e-10
TIGR02731	453	TIGR02731, phytoene_desat, phytoene desaturase	2e-08
PLN02487	569	PLN02487, PLN02487, zeta-carotene desaturase	2e-04
PLN02612	567	PLN02612, PLN02612, phytoene desaturase	0.002

>gnl|CDD|225885 COG3349, COG3349, Uncharacterized conserved protein [Function unknown]

 Score =  181 bits (462), Expect = 3e-53
 Identities = 74/334 (22%), Positives = 121/334 (36%), Gaps = 16/334 (4%)

Query: 1   MIQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLR 60
           + + G  E  Y+    P+     F   E CSA   L IL   ++   +   L   RG+  
Sbjct: 155 LKEKGAREGAYKAAFAPIALALTFIDPEGCSARFFLTILNLFLIVTLEASILRNLRGSPD 214

Query: 61  EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCIS--DVVCGKETYSAGAVVLAVGIS 118
           E + +PW + +  RG +      V +   D  R                  A +  V   
Sbjct: 215 EVLLQPWTEYIPERGRKVHADYPVKELDLDGARGLAKVTGGDVTGPEQEQQAALAVVDAF 274

Query: 119 TLQELIKN--SILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWT 176
            +Q   ++  S       F  +  L  + V+++ L FD  VT     N   G  D+L W+
Sbjct: 275 AVQRFKRDLPSEWPKWSNFDGLYGLRLVPVITLHLRFDGWVTELTDRNQQFGI-DNLLWS 333

Query: 177 FFDLNKIY--------DEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKDF 228
              L  +         D  +  +   ++         +   D+ +VA     L + +   
Sbjct: 334 DDTLGGVVADLALTSPDYVEPGAGCYLEKVLAPGWPFLFESDEAIVATFEKELYELVPSL 393

Query: 229 STATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVT 288
           + A +    +    +SL    PGSY Y     T  PNL +AGD+        S E + ++
Sbjct: 394 AEAKLKSSVLVN-QQSLYGLAPGSYHYRPEQKTPIPNLLLAGDYTKQP-YLGSMEGATLS 451

Query: 289 GLEAANRVVDYLGDGSFSKIIPVEEDEPHIEALR 322
           GL AAN ++D LG  +         D      LR
Sbjct: 452 GLLAANAILDNLGHHAPL-DRRDLSDPAPFGVLR 484

Length = 485

>gnl|CDD|234221 TIGR03467, HpnE, squalene-associated FAD-dependent desaturase

 Score = 60.5 bits (147), Expect = 3e-10
 Identities = 76/271 (28%), Positives = 113/271 (41%), Gaps = 14/271 (5%)

Query: 5   GCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIF 64
           G SERL   +  PL+   L  P E+ SAA    +L    LA +   DL+  R  L E   
Sbjct: 133 GQSERLIERLWEPLLLSALNTPPERASAALAAKVLRDSFLAGRAASDLLLPRVPLSELFP 192

Query: 65  EPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELI 124
           EP    + +RG E   G RV     +        V+ G+ET  A AVVLAV       L+
Sbjct: 193 EPARRWLDSRGGEVRLGTRVRSIEANAGGIRAL-VLAGEETLPADAVVLAVPPRHAASLL 251

Query: 125 KNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIY 184
               L        +  L    + +V L  D+ V +P       G    LA   FD  ++ 
Sbjct: 252 PGEDL-----GALLTALGYSPITTVHLRLDRAVRLP---APMVGLVGGLAQWLFDRGQLA 303

Query: 185 DEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKS 244
            E     A VI A    A +L+ L  +++  + V+ L +     + A  +  ++ +  ++
Sbjct: 304 GEP-GYLAVVISA----ARDLVDLPREELADRIVAELRRAFPRVAGAKPLWARVIKEKRA 358

Query: 245 LTHFFPGSYKYMMRGFTSFPNLFMAGDWITT 275
                PG  +      T +PNLF+AGDW  T
Sbjct: 359 TFAATPGLNRLRPGARTPWPNLFLAGDWTAT 389

The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time. Length = 411

>gnl|CDD|216593 pfam01593, Amino_oxidase, Flavin containing amine oxidoreductase

 Score = 59.5 bits (144), Expect = 7e-10
 Identities = 43/234 (18%), Positives = 79/234 (33%), Gaps = 18/234 (7%)

Query: 74  RGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNRE 133
            G       RV       +   +        T  A AV++ V +  L+ ++    L   +
Sbjct: 217 LGGRVRLNTRVRSITKSGDGVTV--TTVDGRTIEADAVIVTVPLGVLKRILFLPPLPAAK 274

Query: 134 -EFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSA 192
            E ++ L   S+  V ++          ++       G S      D +      +    
Sbjct: 275 QEAIRNLGFGSVSKVFLEFETPFWPENGDLFGLLVTDGLSRGGYVLDTSPSSGSGRGVLL 334

Query: 193 TVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGS 252
           + +  D   A EL  L D++++   +  L K +        ++  +  +      +  GS
Sbjct: 335 SYVLGD--AARELEDLSDEELLEAVLRDLRKLLGPEDVPDPVNFLVSDWHTD--PYARGS 390

Query: 253 YKYMMRGFTS----------FPNLFMAGDWITTRHGSWSQERSYVTGLEAANRV 296
           Y Y   G  S           P LF AG+  +  +     E +  +GL AA RV
Sbjct: 391 YSYPPVGDDSRYRPALRTPVGPGLFFAGEHTSGGYPGT-VEGAVESGLRAARRV 443

This family consists of various amine oxidases, including maze polyamine oxidase (PAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. The family also contains phytoene dehydrogenases and related enzymes. In vertebrates MAO plays an important role regulating the intracellular levels of amines via there oxidation; these include various neurotransmitters, neurotoxins and trace amines. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium. PAOs in plants, bacteria and protozoa oxidase spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins. Length = 444

>gnl|CDD|131778 TIGR02731, phytoene_desat, phytoene desaturase

 Score = 54.9 bits (132), Expect = 2e-08
 Identities = 59/251 (23%), Positives = 121/251 (48%), Gaps = 16/251 (6%)

Query: 57  GTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETY-----SAGAV 111
           G   E++ +P +D + +RG E     R+ + + +E+      V+   E       +A A 
Sbjct: 209 GAPPERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAY 268

Query: 112 VLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKV-TVPNVSNACSGFG 170
           V A+ +   + L+          F K+  L  + V++V +WFD+K+ TV ++  + S   
Sbjct: 269 VSAMPVDIFKLLLPQP-WKQMPFFQKLNGLEGVPVINVHIWFDRKLTTVDHLLFSRS--- 324

Query: 171 DSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKC----IK 226
             L   + D+++   E+ D   ++++  F  A + +   D++++   ++ L+K     IK
Sbjct: 325 -PLLSVYADMSETCKEYADPDKSMLELVFAPAADWIGRSDEEIIDATMAELAKLFPNHIK 383

Query: 227 DFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSY 286
             S A ++ +K+ + P+S+    PG  +Y     T  PN F+AGD+   ++ + S E + 
Sbjct: 384 ADSPAKILKYKVVKTPRSVYKTTPGRQQYRPHQKTPIPNFFLAGDYTKQKYLA-SMEGAV 442

Query: 287 VTGLEAANRVV 297
           ++G   A  +V
Sbjct: 443 LSGKLCAQAIV 453

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 453

>gnl|CDD|215268 PLN02487, PLN02487, zeta-carotene desaturase

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 50/215 (23%), Positives = 86/215 (40%), Gaps = 26/215 (12%)

Query: 103 KETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVT---- 158
           KE   A A V A  +  ++ L+        E F  +  L  + VV+V+L ++  VT    
Sbjct: 344 KEIVKADAYVAACDVPGIKRLLPEQWR-EYEFFDNIYKLVGVPVVTVQLRYNGWVTEMQD 402

Query: 159 VPNVSNACSGFG-DSLAWT-------FFDL--NKIYDEHKDDSATVIQADFYHANELMPL 208
           +          G D+L ++       F DL      D +K+   ++IQA     +  MPL
Sbjct: 403 LELSRQLRRAAGLDNLLYSADADFSCFADLALTSPEDYYKEGEGSLIQAVLTPGDPYMPL 462

Query: 209 KDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFM 268
            +D++V K    + +         V    + +  +SL    PG   +     T   N F+
Sbjct: 463 SNDKIVEKVHKQVLELFPSSRGLEVTWSSVVKIGQSLYREAPGMDPFRPDQKTPISNFFL 522

Query: 269 AG-----DWITTRHGSWSQERSYVTGLEAANRVVD 298
           AG     D+I       S E + ++G +AA  + +
Sbjct: 523 AGSYTKQDYID------SMEGATLSGRQAAAYICE 551

Length = 569

>gnl|CDD|215330 PLN02612, PLN02612, phytoene desaturase

 Score = 39.8 bits (93), Expect = 0.002
 Identities = 48/250 (19%), Positives = 107/250 (42%), Gaps = 20/250 (8%)

Query: 61  EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL 120
           E++  P +D  ++ G E     R+     +++      ++           V A  +  L
Sbjct: 308 ERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPVDIL 367

Query: 121 QELIKNSILCNREE---FLKVLNLASIDVVSVKLWFDKKV--TVPNVSNACSGFGDSLAW 175
           + L+ +      +E   F K+  L  + V++V +WFD+K+  T  ++  + S     L  
Sbjct: 368 KLLLPD----QWKEIPYFKKLDKLVGVPVINVHIWFDRKLKNTYDHLLFSRS----PLLS 419

Query: 176 TFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCI-----KDFST 230
            + D++    E+ D + ++++  F  A E +   D+ ++   +  L+K        D S 
Sbjct: 420 VYADMSTTCKEYYDPNKSMLELVFAPAEEWISRSDEDIIDATMKELAKLFPDEISADQSK 479

Query: 231 ATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGL 290
           A ++ + + + P+S+    P          +     ++AGD+   ++ + S E + ++G 
Sbjct: 480 AKILKYHVVKTPRSVYKTVPNCEPCRPLQRSPIEGFYLAGDYTKQKYLA-SMEGAVLSGK 538

Query: 291 EAANRVV-DY 299
             A  +V DY
Sbjct: 539 LCAQSIVQDY 548

Length = 567

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	343
PLN02487	569	zeta-carotene desaturase	100.0
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	100.0
PLN02612	567	phytoene desaturase	100.0
TIGR03467	419	HpnE squalene-associated FAD-dependent desaturase.	100.0
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	99.98
PRK07233	434	hypothetical protein; Provisional	99.96
PRK07208	479	hypothetical protein; Provisional	99.93
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	99.93
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	99.92
PRK12416	463	protoporphyrinogen oxidase; Provisional	99.92
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	99.91
PLN02576	496	protoporphyrinogen oxidase	99.91
PRK11883	451	protoporphyrinogen oxidase; Reviewed	99.91
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	99.89
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	99.88
PLN02268	435	probable polyamine oxidase	99.86
PLN03000	881	amine oxidase	99.85
COG3349	485	Uncharacterized conserved protein [Function unknow	99.85
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	99.85
PLN02529	738	lysine-specific histone demethylase 1	99.84
PLN02676	487	polyamine oxidase	99.82
KOG4254	561	consensus Phytoene desaturase [Coenzyme transport	99.82
PLN02328	808	lysine-specific histone demethylase 1 homolog	99.81
PLN02568	539	polyamine oxidase	99.81
PLN02976	1713	amine oxidase	99.81
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	99.77
KOG1276	491	consensus Protoporphyrinogen oxidase [Coenzyme tra	99.75
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	99.64
KOG0029	501	consensus Amine oxidase [Secondary metabolites bio	99.62
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	99.6
KOG0685	498	consensus Flavin-containing amine oxidase [Coenzym	99.53
COG2907	447	Predicted NAD/FAD-binding protein [General functio	99.23
PRK13977	576	myosin-cross-reactive antigen; Provisional	99.18
TIGR02352	337	thiamin_ThiO glycine oxidase ThiO. This family con	98.67
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	98.65
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	98.64
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	98.57
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	98.44
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	98.27
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	98.23
TIGR03197	381	MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri	98.19
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	98.16
PF07156	368	Prenylcys_lyase: Prenylcysteine lyase; InterPro: I	98.1
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	98.09
PF00996	438	GDI: GDP dissociation inhibitor; InterPro: IPR0182	97.99
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	97.95
KOG2820	399	consensus FAD-dependent oxidoreductase [General fu	97.95
TIGR03377	516	glycerol3P_GlpA glycerol-3-phosphate dehydrogenase	97.78
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	97.74
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	97.72
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	97.66
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	97.52
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	97.49
PRK10015	429	oxidoreductase; Provisional	97.39
PLN02464	627	glycerol-3-phosphate dehydrogenase	97.31
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	97.3
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	97.25
PRK06847	375	hypothetical protein; Provisional	97.19
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	97.16
PRK06185	407	hypothetical protein; Provisional	97.12
KOG2844	856	consensus Dimethylglycine dehydrogenase precursor	97.08
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	97.03
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	96.95
TIGR03862	376	flavo_PP4765 uncharacterized flavoprotein, PP_4765	96.84
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	96.82
COG2081	408	Predicted flavoproteins [General function predicti	96.82
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	96.8
PTZ00383	497	malate:quinone oxidoreductase; Provisional	96.75
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	96.65
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	96.56
PRK08274	466	tricarballylate dehydrogenase; Validated	96.52
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	96.5
KOG2852	380	consensus Possible oxidoreductase [General functio	96.49
PRK07045	388	putative monooxygenase; Reviewed	96.46
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	96.41
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	96.4
PRK07190	487	hypothetical protein; Provisional	96.39
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	96.39
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	96.38
COG0579	429	Predicted dehydrogenase [General function predicti	96.36
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	96.35
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	96.27
PRK11728	393	hydroxyglutarate oxidase; Provisional	96.19
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	96.16
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	96.06
TIGR00275	400	flavoprotein, HI0933 family. The model when search	96.03
PRK07588	391	hypothetical protein; Provisional	96.01
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	95.97
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	95.96
PRK07121	492	hypothetical protein; Validated	95.93
TIGR01816	565	sdhA_forward succinate dehydrogenase, flavoprotein	95.92
PRK08244	493	hypothetical protein; Provisional	95.91
PLN02697	529	lycopene epsilon cyclase	95.9
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	95.89
KOG1439	440	consensus RAB proteins geranylgeranyltransferase c	95.85
PRK10157	428	putative oxidoreductase FixC; Provisional	95.84
PRK06834	488	hypothetical protein; Provisional	95.84
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	95.74
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	95.73
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	95.7
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	95.68
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	95.65
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	95.65
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	95.59
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	95.58
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	95.56
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	95.55
PRK05675	570	sdhA succinate dehydrogenase flavoprotein subunit;	95.5
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	95.49
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	95.47
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	95.43
PRK09126	392	hypothetical protein; Provisional	95.43
PLN02463	447	lycopene beta cyclase	95.41
PRK06175	433	L-aspartate oxidase; Provisional	95.37
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	95.35
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	95.34
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	95.32
PRK08401	466	L-aspartate oxidase; Provisional	95.3
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	95.24
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	95.15
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	95.02
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	94.96
PRK12842	574	putative succinate dehydrogenase; Reviewed	94.95
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	94.84
PRK05257	494	malate:quinone oxidoreductase; Validated	94.8
PRK12839	572	hypothetical protein; Provisional	94.72
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	94.62
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	94.62
PRK08013	400	oxidoreductase; Provisional	94.61
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	94.59
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	94.57
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	94.54
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	94.53
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	94.52
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	94.5
PRK06996	398	hypothetical protein; Provisional	94.49
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	94.48
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	94.45
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	94.44
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	94.4
PRK06126	545	hypothetical protein; Provisional	94.35
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	94.32
PRK07512	513	L-aspartate oxidase; Provisional	94.3
PRK09564	444	coenzyme A disulfide reductase; Reviewed	94.23
PRK13339	497	malate:quinone oxidoreductase; Reviewed	94.16
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	94.15
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	93.94
PRK08275	554	putative oxidoreductase; Provisional	93.91
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	93.8
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	93.79
PRK06116	450	glutathione reductase; Validated	93.73
PRK07804	541	L-aspartate oxidase; Provisional	93.68
PRK08132	547	FAD-dependent oxidoreductase; Provisional	93.62
PRK07395	553	L-aspartate oxidase; Provisional	93.42
PRK08071	510	L-aspartate oxidase; Provisional	93.23
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	93.09
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	93.07
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	92.92
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	92.82
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	92.71
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	92.63
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	92.62
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	92.6
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	92.58
PLN02985	514	squalene monooxygenase	92.56
PLN02507	499	glutathione reductase	92.5
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	92.44
PRK14694	468	putative mercuric reductase; Provisional	92.35
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	92.34
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	92.19
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	91.84
PRK06184	502	hypothetical protein; Provisional	91.78
PRK14727	479	putative mercuric reductase; Provisional	91.77
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	91.75
PRK14989	847	nitrite reductase subunit NirD; Provisional	91.68
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	91.6
PRK06753	373	hypothetical protein; Provisional	91.45
PRK07845	466	flavoprotein disulfide reductase; Reviewed	91.44
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	91.38
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	91.3
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	91.27
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	91.18
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	91.17
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	91.1
PRK08163	396	salicylate hydroxylase; Provisional	91.04
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	90.93
COG5044	434	MRS6 RAB proteins geranylgeranyltransferase compon	90.88
PRK13748	561	putative mercuric reductase; Provisional	90.85
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	90.73
PLN02815	594	L-aspartate oxidase	90.7
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	90.62
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	90.61
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	90.51
PRK06370	463	mercuric reductase; Validated	90.32
PRK09897	534	hypothetical protein; Provisional	90.29
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	90.26
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	90.17
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	90.13
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	90.01
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	89.78
TIGR02053	463	MerA mercuric reductase. This model represents the	89.77
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	89.76
KOG2404	477	consensus Fumarate reductase, flavoprotein subunit	89.72
COG4716	587	Myosin-crossreactive antigen [Function unknown]	89.7
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	89.66
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	89.51
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	89.3
PRK09077	536	L-aspartate oxidase; Provisional	89.2
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	89.15
PTZ00052	499	thioredoxin reductase; Provisional	89.13
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	89.11
PRK10262	321	thioredoxin reductase; Provisional	89.11
PRK07538	413	hypothetical protein; Provisional	89.03
PTZ00058	561	glutathione reductase; Provisional	89.02
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	88.97
KOG2853	509	consensus Possible oxidoreductase [General functio	88.95
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	88.94
PLN02661	357	Putative thiazole synthesis	88.8
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	88.74
PRK02106	560	choline dehydrogenase; Validated	88.67
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	88.58
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	88.27
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	88.24
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	88.22
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	88.14
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	88.14
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	87.99
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	87.65
PLN02546	558	glutathione reductase	87.36
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	86.7
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	86.41
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	86.38
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	86.1
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	85.18
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	85.06
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	84.93
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	84.73
PRK08294	634	phenol 2-monooxygenase; Provisional	84.59
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	84.37
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	84.1
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	84.03
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	83.99
PRK11445	351	putative oxidoreductase; Provisional	83.4
PRK07846	451	mycothione reductase; Reviewed	83.27
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	82.83
PRK12831	464	putative oxidoreductase; Provisional	82.8
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	82.66
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	81.72
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	81.56
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	81.49
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	81.47
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	81.3
PRK13512	438	coenzyme A disulfide reductase; Provisional	81.23
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	80.85
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	80.63
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	80.14
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	80.06

>PLN02487 zeta-carotene desaturase

Probab=100.00  E-value=9.7e-36  Score=287.00  Aligned_cols=297  Identities=20%  Similarity=0.260  Sum_probs=237.7

Q ss_pred             ccCCCCHHHHHHhHHHHHHhhhcCCcccccHHHHHHHHHHHHHhcCCCceeEeecCCCchhhhHHHHHHHHHcCCeEEcc
Q 019274            2 IQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDG   81 (343)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~~~~~~~~~~~~~gG~~~~l~~~l~~~l~~~G~~i~~~   81 (343)
                      ++++.+++++++||+|++.++++++++++|+++++.+|..+. ....++++.|++||+.+.|+++++++|+++|++|+++
T Consensus       237 ~r~~g~~~~~~~l~dPll~~~~~~~~d~~SA~~~~~vl~~~~-~~~~~~~l~~~~Gg~~~~l~~pl~~~L~~~Gg~V~l~  315 (569)
T PLN02487        237 TSHGGTRMSIKRMWDPIAYALGFIDCDNISARCMLTIFSLFA-TKTEASLLRMLKGSPDVRLSGPIAKYITDRGGRFHLR  315 (569)
T ss_pred             HHhCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHh-hcCCcceeeecCCCchHHHHHHHHHHHHHcCCEEEeC
Confidence            456667789999999999999999999999999999986532 2445677899999987679999999999999999999


Q ss_pred             eeeeEEEecCC-CC--eEEEEEE--C--CeEEecCEEEEeeChhhHHHhhhhhcccCchhHHhhccCcccceEEEEEEec
Q 019274           82 RRVTDFIYDEE-RC--CISDVVC--G--KETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFD  154 (343)
Q Consensus        82 ~~V~~I~~~~~-~g--~v~~V~~--~--g~~~~ad~VV~a~p~~~~~~Ll~~~~~~~~~~~~~~~~l~~~~~~~v~l~~~  154 (343)
                      ++|++|..+++ +|  +|++|++  +  ++++.||.||+|+|++.+.+|+++.. +..+.+..+.++.+.++++++|+|+
T Consensus       316 ~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~~~~~Llp~~~-~~~~~~~~l~~L~~~pi~tv~L~~d  394 (569)
T PLN02487        316 WGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVPGIKRLLPEQW-REYEFFDNIYKLVGVPVVTVQLRYN  394 (569)
T ss_pred             CceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHHHHHHhCCchh-hccHHHhHHhcCCCeeEEEEEEEec
Confidence            99999999742 13  4788888  3  34689999999999999999998753 2234577888898999999999999


Q ss_pred             cCCCCCCCcc------eeecCCC-----Cccce-Eeeccccc-ccc-CCCCCeEEEEEeeCCCCCCCCCHHHHHHHHHHH
Q 019274          155 KKVTVPNVSN------ACSGFGD-----SLAWT-FFDLNKIY-DEH-KDDSATVIQADFYHANELMPLKDDQVVAKAVSY  220 (343)
Q Consensus       155 ~~~~~~~~~~------~~~~~~~-----~~~~~-~~d~~~~~-~~~-~~~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~  220 (343)
                      +++..+.+-+      .+.+++.     ...|. +++..... ..| ....++++.+++++++++..++++++++.++++
T Consensus       395 ~~v~~~~~~~~~r~l~~~~g~~~~~~~~~~~~~f~~di~l~~~~~~~~~~~g~~l~~vis~a~~~~~~~~~ei~~~~~~~  474 (569)
T PLN02487        395 GWVTEMQDLELSRQLRRAAGLDNLLYSADADFSCFADLALTSPEDYYKEGEGSLIQAVLTPGDPYMPLSNDKIVEKVHKQ  474 (569)
T ss_pred             ccccccccccccccccccccccccccccCCCcceEeeeecCCHHHHcccCCceEEEEEEcCCccccCCCHHHHHHHHHHH
Confidence            8765432110      1223321     11232 23422111 123 223457888888888888899999999999999


Q ss_pred             HhhhcccCCCCceeeeEEEecCCCccccCCCCCCCCCCCCCCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHHHh
Q 019274          221 LSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYL  300 (343)
Q Consensus       221 L~~~~p~~~~~~~~~~~~~r~~~~~~~~~~g~~~~~p~~~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~~~  300 (343)
                      |.++||.+.+.++.+..+.+.+++++...||+...||.+.|+++|||+||||+.++|| ++||||+.||..||+.|++.-
T Consensus       475 L~~~~p~~~~~~v~~~~vv~~~~at~~~~pg~~~~RP~~~T~~~nl~LAGD~t~~~yP-at~EgAv~SG~~AA~~i~~~~  553 (569)
T PLN02487        475 VLELFPSSRGLEVTWSSVVKIGQSLYREAPGMDPFRPDQKTPISNFFLAGSYTKQDYI-DSMEGATLSGRQAAAYICEAG  553 (569)
T ss_pred             HHHhCcccccCceEEEEEEEccCceeccCCCccccCCCCCCCCCCEEEeCcccccCCc-chHHHHHHHHHHHHHHHHHHh
Confidence            9999999876567888889999999999999988889999999999999999999999 799999999999999998865


Q ss_pred             C
Q 019274          301 G  301 (343)
Q Consensus       301 ~  301 (343)
                      +
T Consensus       554 ~  554 (569)
T PLN02487        554 E  554 (569)
T ss_pred             h
Confidence            4

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=100.00  E-value=2.6e-34  Score=274.88  Aligned_cols=294  Identities=18%  Similarity=0.268  Sum_probs=229.1

Q ss_pred             CccCCCCHHHHHHhHHHHHHhhhcCCcccccHHHHHHHHHHHHHhcCCCceeEeecCCCchhhhHHHHHHHHHcCCeEEc
Q 019274            1 MIQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLD   80 (343)
Q Consensus         1 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~~~~~~~~~~~~~gG~~~~l~~~l~~~l~~~G~~i~~   80 (343)
                      |++++.++.++++||+|++.++++.+++++|+++++.+++.+. ....++.+.+++||++..+.++|.+.|+++|++|++
T Consensus       160 l~~~~~~~~~~~~~~~Pll~~~~~~~~~~~Sa~~~~~~~~~~~-~~~~~s~~~~~~g~~~~~l~~pl~~~L~~~Gg~i~~  238 (474)
T TIGR02732       160 FLSHGGSLGSIKRMWDPIAYALGFIDCENISARCMLTIFMLFA-AKTEASKLRMLKGSPDKYLTKPILEYIEARGGKFHL  238 (474)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH-hCCCcceeeeecCCcchhHHHHHHHHHHHCCCEEEC
Confidence            3567777889999999999999999999999999999887543 345567888999998777899999999999999999


Q ss_pred             ceeeeEEEecCC-CC--eEEEEEEC-C---eEEecCEEEEeeChhhHHHhhhhhcccCchhHHhhccCcccceEEEEEEe
Q 019274           81 GRRVTDFIYDEE-RC--CISDVVCG-K---ETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWF  153 (343)
Q Consensus        81 ~~~V~~I~~~~~-~g--~v~~V~~~-g---~~~~ad~VV~a~p~~~~~~Ll~~~~~~~~~~~~~~~~l~~~~~~~v~l~~  153 (343)
                      +++|++|..+++ ++  +|++|+++ |   +++.||+||+|+|++.+.+|+++... ..+....+.++.+.++++++++|
T Consensus       239 ~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~~~~~Ll~~~~~-~~~~~~~l~~l~~~pi~~v~l~~  317 (474)
T TIGR02732       239 RHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVPGIKRLLPQEWR-QFEEFDNIYKLDAVPVATVQLRY  317 (474)
T ss_pred             CCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChHHHHhhCChhhh-cCHHHhhHhcCCCCCeEEEEEEe
Confidence            999999998641 02  37777774 3   46899999999999999999987421 23455677888899999999999


Q ss_pred             ccCCCCCCCcc---e---eecCC-----CCccce-Eeecccccc-ccCC-CCCeEEEEEeeCCCCCCCCCHHHHHHHHHH
Q 019274          154 DKKVTVPNVSN---A---CSGFG-----DSLAWT-FFDLNKIYD-EHKD-DSATVIQADFYHANELMPLKDDQVVAKAVS  219 (343)
Q Consensus       154 ~~~~~~~~~~~---~---~~~~~-----~~~~~~-~~d~~~~~~-~~~~-~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~  219 (343)
                      ++++..+.+.+   .   ..+++     ....|. +++.....+ .|.. ..+.++.++++.+.++.+++++++++.+++
T Consensus       318 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~  397 (474)
T TIGR02732       318 DGWVTELQDLAKRKQLKRAAGLDNLLYTADADFSCFADLALTSPDDYYKEGQGSLLQCVLTPGDPWMPESNEEIAKRVDK  397 (474)
T ss_pred             ccccccccchhhhhcccccccccccccccCccceeeehhhccCHHHHhccCCCeEEEEEEeChhhhcCCCHHHHHHHHHH
Confidence            98765432101   0   11111     111122 223221112 2422 234556677777777778899999999999


Q ss_pred             HHhhhcccCCCCceeeeEEEecCCCccccCCCCCCCCCCCCCCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHH
Q 019274          220 YLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVV  297 (343)
Q Consensus       220 ~L~~~~p~~~~~~~~~~~~~r~~~~~~~~~~g~~~~~p~~~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il  297 (343)
                      +|+++||.+.+.++++..+.+.+++++.+.||+..++|.++|+++|||+||||+.++|| ++||||+.||+.||+.|+
T Consensus       398 ~L~~~~p~~~~~~~~~~~v~~~~~a~~~~~pg~~~~~P~~~t~~~~l~lAGD~t~~~~p-as~egAv~sG~~aA~~i~  474 (474)
T TIGR02732       398 QVRALFPSSKNLKLTWSSVVKLAQSLYREAPGMDPFRPDQKTPISNFFLAGSYTQQDYI-DSMEGATLSGRQAAAAIL  474 (474)
T ss_pred             HHHHhCccccCCceeEEEEEEecCceeccCCCCcccCCCCCCCCCCeEEeccccccCch-HHHhHHHHHHHHHHHHhC
Confidence            99999998766667777788899999999999988899999999999999999999999 799999999999999874

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>PLN02612 phytoene desaturase

Probab=100.00  E-value=1.5e-33  Score=274.63  Aligned_cols=296  Identities=18%  Similarity=0.250  Sum_probs=234.7

Q ss_pred             CccCCCCHHHHHHhHHHHHHhhhcCCcccccHHHHHHHHHHHHHhcCCCceeEeecCCCchhhhHHHHHHHHHcCCeEEc
Q 019274            1 MIQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLD   80 (343)
Q Consensus         1 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~~~~~~~~~~~~~gG~~~~l~~~l~~~l~~~G~~i~~   80 (343)
                      |++.++++++.+.+|+|++.++++.+++++|+..++..+..+ +....++...++.|+..+.|+++|++.|++.|++|++
T Consensus       249 l~~~~~~~~~~~~~~~~l~~~~~~~~p~~~S~~~~l~~l~~~-l~~~~gs~~~~~~G~~~~~l~~~l~~~l~~~G~~I~l  327 (567)
T PLN02612        249 MRKQGVPDRVNDEVFIAMSKALNFINPDELSMQCILIALNRF-LQEKHGSKMAFLDGNPPERLCMPIVDHFQSLGGEVRL  327 (567)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHhcCCCHHHhhHHHHHHHHHHH-HhccCCceEeeecCCchHHHHHHHHHHHHhcCCEEEe
Confidence            356788999999999999999999999999999999888765 3445567777888886578999999999999999999


Q ss_pred             ceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhHHHhhhhhcccCchhHHhhccCcccceEEEEEEeccCCCC
Q 019274           81 GRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTV  159 (343)
Q Consensus        81 ~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~~~Ll~~~~~~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~  159 (343)
                      |++|++|..+++ +++++|++. |++++||+||+|+|+..+.+|++.... +.++.+.++++.+.++++++++|+++++.
T Consensus       328 ~~~V~~I~~~~~-g~v~~v~~~~G~~~~ad~VI~a~p~~~l~~Ll~~~~~-~~~~~~~l~~l~~~~v~~v~l~~dr~~~~  405 (567)
T PLN02612        328 NSRIKKIELNDD-GTVKHFLLTNGSVVEGDVYVSATPVDILKLLLPDQWK-EIPYFKKLDKLVGVPVINVHIWFDRKLKN  405 (567)
T ss_pred             CCeeeEEEECCC-CcEEEEEECCCcEEECCEEEECCCHHHHHHhCcchhc-CcHHHHHHHhcCCCCeEEEEEEECcccCC
Confidence            999999998664 666777775 678999999999999988888876432 23455666778888999999999999763


Q ss_pred             CCCcceeecCCCCccceEeeccccccccCCCCCeEEEEEeeCCCCCCCCCHHHHHHHHHHHHhhhcccCC-----CCcee
Q 019274          160 PNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKDFS-----TATVM  234 (343)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~L~~~~p~~~-----~~~~~  234 (343)
                      +..+ .++.-+ .....+++.+..++.|.+++.+++.+.+..+.+|.+++++++++.++++|+++||+..     ..+++
T Consensus       406 ~~~~-~~~~~~-~~~~~~~d~S~~~~~~~~~~~~ll~~~~~~a~~~~~~sdeei~e~vl~~L~~lfp~~~~~~~~~~~i~  483 (567)
T PLN02612        406 TYDH-LLFSRS-PLLSVYADMSTTCKEYYDPNKSMLELVFAPAEEWISRSDEDIIDATMKELAKLFPDEISADQSKAKIL  483 (567)
T ss_pred             CCCc-eeecCC-CCceeehhhhhcchhhcCCCCeEEEEEEEcChhhhcCCHHHHHHHHHHHHHHHCCcccccccCCceEE
Confidence            3222 222211 1112234555544555555667776666667788889999999999999999999762     12455


Q ss_pred             eeEEEecCCCccccCCCCCCCCCCCCCCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHHHhCC
Q 019274          235 DHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGD  302 (343)
Q Consensus       235 ~~~~~r~~~~~~~~~~g~~~~~p~~~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~~~~~  302 (343)
                      ...+.+.|.+++.+.|+...++|.+++|++||||||||+.++|+ ++|+||+.||++||+.|+++++.
T Consensus       484 ~~~~v~~P~a~~~~~pg~~~~rp~~~tPi~~l~lAGd~t~~~~~-~smeGAv~SG~~AA~~I~~~~~~  550 (567)
T PLN02612        484 KYHVVKTPRSVYKTVPNCEPCRPLQRSPIEGFYLAGDYTKQKYL-ASMEGAVLSGKLCAQSIVQDYEL  550 (567)
T ss_pred             EEEEeccCCceEEeCCCCcccCccccCccCCEEEeecceeCCch-hhHHHHHHHHHHHHHHHHHHhcc
Confidence            55566788888888888777788888999999999999988999 69999999999999999999875

>TIGR03467 HpnE squalene-associated FAD-dependent desaturase

Probab=100.00  E-value=1.1e-30  Score=247.37  Aligned_cols=280  Identities=26%  Similarity=0.329  Sum_probs=211.1

Q ss_pred             ccCCCCHHHHHHhHHHHHHhhhcCCcccccHHHHHHHHHHHHHhcCCCceeEeecCCCchhhhHHHHHHHHHcCCeEEcc
Q 019274            2 IQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDG   81 (343)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~~~~~~~~~~~~~gG~~~~l~~~l~~~l~~~G~~i~~~   81 (343)
                      +++++++++++.+++|++.++++.+++++|+.+++..+...+........+.+|+||+++.+.++|++.|++.|++|++|
T Consensus       138 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~~~~~l~~~l~~~g~~i~~~  217 (419)
T TIGR03467       138 QAAGQSERLIERLWEPLLLSALNTPPERASAALAAKVLRDSFLAGRAASDLLLPRVPLSELFPEPARRWLDSRGGEVRLG  217 (419)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCHHHHHHHHHHHHHHHcCCEEEcC
Confidence            45677999999999999999999999999999998887654322223445788999976656677999999999999999


Q ss_pred             eeeeEEEecCCCCeEEEE-EECCeEEecCEEEEeeChhhHHHhhhhhcccCchhHHhhccCcccceEEEEEEeccCCCCC
Q 019274           82 RRVTDFIYDEERCCISDV-VCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVP  160 (343)
Q Consensus        82 ~~V~~I~~~~~~g~v~~V-~~~g~~~~ad~VV~a~p~~~~~~Ll~~~~~~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~  160 (343)
                      ++|++|..++  +++..+ ..+|++++||+||+|+|++++.+|+++.     ...+.+.++++.++.++++.++++++.+
T Consensus       218 ~~V~~i~~~~--~~~~~~~~~~g~~~~~d~vi~a~p~~~~~~ll~~~-----~~~~~l~~~~~~~~~~v~l~~~~~~~~~  290 (419)
T TIGR03467       218 TRVRSIEANA--GGIRALVLSGGETLPADAVVLAVPPRHAASLLPGE-----DLGALLTALGYSPITTVHLRLDRAVRLP  290 (419)
T ss_pred             CeeeEEEEcC--CcceEEEecCCccccCCEEEEcCCHHHHHHhCCCc-----hHHHHHhhcCCcceEEEEEEeCCCcCCC
Confidence            9999999887  444322 2356788999999999999999987652     2345677888999999999999988644


Q ss_pred             CCcceeecCC-CCccceEeeccccccccCCCCCeEEEEEeeCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCceeeeEEE
Q 019274          161 NVSNACSGFG-DSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIR  239 (343)
Q Consensus       161 ~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~L~~~~p~~~~~~~~~~~~~  239 (343)
                      .+   ++++. ....| +++.+...     +...++.+....+.++..++++++.+.++++|+++||......+++..+.
T Consensus       291 ~~---~~~~~~~~~~~-~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~e~~~~~~l~~l~~~~~~~~~~~~~~~~~~  361 (419)
T TIGR03467       291 AP---MVGLVGGLAQW-LFDRGQLA-----GEPGYLAVVISAARDLVDLPREELADRIVAELRRAFPRVAGAKPLWARVI  361 (419)
T ss_pred             CC---eeeecCCceeE-EEECCcCC-----CCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhcCccccCCccceEEE
Confidence            33   22221 12223 34432211     12233333333455667788999999999999999997643356666778


Q ss_pred             ecCCCccccCCCCCCCCCCCCCCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHH
Q 019274          240 RFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD  298 (343)
Q Consensus       240 r~~~~~~~~~~g~~~~~p~~~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~  298 (343)
                      +|+++.+.+.+|....+|...++++|||||||++.++++ ++||||+.||.+||++|++
T Consensus       362 ~~~~~~~~~~~g~~~~~~~~~~~~~~l~~aGd~~~~~~~-~~~egA~~SG~~aA~~i~~  419 (419)
T TIGR03467       362 KEKRATFAATPGLNRLRPGARTPWPNLFLAGDWTATGWP-ATMEGAVRSGYQAAEAVLK  419 (419)
T ss_pred             EccCCccccCCcccccCCCCCCCcCCEEEecccccCCCc-chHHHHHHHHHHHHHHHhC
Confidence            888888777777655567666788999999999998888 6999999999999999874

The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.

>TIGR02731 phytoene_desat phytoene desaturase

Probab=99.98  E-value=6e-30  Score=244.88  Aligned_cols=289  Identities=22%  Similarity=0.348  Sum_probs=215.6

Q ss_pred             ccCCCCHHHHHHhHHHHHHhhhcCCcccccHHHHHHHHHHHHHhcCCCceeEeecCCCchhhhHHHHHHHHHcCCeEEcc
Q 019274            2 IQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDG   81 (343)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~~~~~~~~~~~~~gG~~~~l~~~l~~~l~~~G~~i~~~   81 (343)
                      ++.++++++.+.+++|++.++++.+++++|+.+++..+..++ ....+....+..|+....++++|.+.+++.|++|++|
T Consensus       155 ~~~~~~~~~~~~~~~pl~~~~~~~~p~~~S~~~~~~~l~~~~-~~~~g~~~~~~~g~~~~~l~~~l~~~l~~~g~~i~l~  233 (453)
T TIGR02731       155 RKQGVPERVNDEVFIAMSKALNFINPDELSMTVVLTALNRFL-QERHGSKMAFLDGAPPERLCQPIVDYITSRGGEVRLN  233 (453)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH-hcCCCCeeEeecCCChHHHHHHHHHHHHhcCCEEeCC
Confidence            467889999999999999999999999999999998887754 3233444455666655679999999999999999999


Q ss_pred             eeeeEEEecCCCCeEEEEEEC-Ce-----EEecCEEEEeeChhhHHHhhhhhcccCchhHHhhccCcccceEEEEEEecc
Q 019274           82 RRVTDFIYDEERCCISDVVCG-KE-----TYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDK  155 (343)
Q Consensus        82 ~~V~~I~~~~~~g~v~~V~~~-g~-----~~~ad~VV~a~p~~~~~~Ll~~~~~~~~~~~~~~~~l~~~~~~~v~l~~~~  155 (343)
                      ++|++|..+++ |++++|++. ++     ++.||.||+|+|++.+.+|++... +.....+.+.++++.+++++++++++
T Consensus       234 ~~V~~I~~~~~-~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~~~~~lL~~~~-~~~~~~~~~~~~~~~~~~~v~l~~~~  311 (453)
T TIGR02731       234 SRLKEIVLNED-GSVKHFVLADGEGQRRFEVTADAYVSAMPVDIFKLLLPQPW-KQMPFFQKLNGLEGVPVINVHIWFDR  311 (453)
T ss_pred             CeeEEEEECCC-CCEEEEEEecCCCCceeEEECCEEEEcCCHHHHHhhCchhh-hcCHHHHHhhcCCCCcEEEEEEEEcc
Confidence            99999987654 677788874 43     789999999999999888986542 11234566677788899999999999


Q ss_pred             CCCCCCCcceeecCCCCccceEeeccccccccCCCCCeEEEEEeeCCCCCCCCCHHHHHHHHHHHHhhhcccC----CCC
Q 019274          156 KVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKDF----STA  231 (343)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~L~~~~p~~----~~~  231 (343)
                      +++..  ...++..+... ...++.+.....+.++++.++.+.+...+.+.+++++++.+.++++|+++||+.    ...
T Consensus       312 ~~~~~--~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ee~~~~v~~~L~~~~~~~~~~~~~~  388 (453)
T TIGR02731       312 KLTTV--DHLLFSRSPLL-SVYADMSETCKEYADPDKSMLELVFAPAADWIGRSDEEIIDATMAELAKLFPNHIKADSPA  388 (453)
T ss_pred             ccCCC--CceeeeCCCcc-eeecchhhhChhhcCCCCeEEEEEecChhhhhcCCHHHHHHHHHHHHHHhCCcccCCCCCc
Confidence            87532  22222222111 112232222222333455666654445566777899999999999999999853    122


Q ss_pred             ceeeeEEEecCCCccccCCCCCCCCCCCCCCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHH
Q 019274          232 TVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVV  297 (343)
Q Consensus       232 ~~~~~~~~r~~~~~~~~~~g~~~~~p~~~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il  297 (343)
                      +++...+.+.+.+.+.+.||...++|...+|++||||||+++.++|+ ++||||+.||++||+.|.
T Consensus       389 ~~~~~~~~~~p~a~~~~~pg~~~~~~~~~~p~~~l~~AG~~~a~~~~-g~~egAi~SG~~AA~~v~  453 (453)
T TIGR02731       389 KILKYKVVKTPRSVYKTTPGRQQYRPHQKTPIPNFFLAGDYTKQKYL-ASMEGAVLSGKLCAQAIV  453 (453)
T ss_pred             eEEEEEEEECCCceeccCCCChhhCccccCccCCEEEeehhccCccc-ccHHHHHHHHHHHHHHhC
Confidence            45566666788887767788655677777899999999999998999 699999999999999873

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>PRK07233 hypothetical protein; Provisional

Probab=99.96  E-value=1.6e-27  Score=226.99  Aligned_cols=287  Identities=17%  Similarity=0.170  Sum_probs=209.3

Q ss_pred             CCCHHHHHHhHHHHHHhhhcCCcccccHHHHHHHHHHHHHhcC--CCceeEeecCCCchhhhHHHHHHHHHcCCeEEcce
Q 019274            5 GCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQ--KNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGR   82 (343)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~~~~--~~~~~~~~~gG~~~~l~~~l~~~l~~~G~~i~~~~   82 (343)
                      .++++.++++++|++.++++.+++++|+.+++..+........  ....+.+|+||+ +.|+++|++.+++.|++|++++
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~-~~l~~~l~~~l~~~g~~v~~~~  219 (434)
T PRK07233        141 WSGEGVYEVFWEPLLESKFGDYADDVSAAWLWSRIKRRGNRRYSLFGEKLGYLEGGF-ATLIDALAEAIEARGGEIRLGT  219 (434)
T ss_pred             hcCHHHHHHHHHHHHhcccCCCccccCHHHHHHHHhhhhccccccCCceEeccCCCH-HHHHHHHHHHHHhcCceEEeCC
Confidence            4578899999999999999999999999988776654321111  122467899995 7799999999999999999999


Q ss_pred             eeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhhHHHhhhhhcccCchhHHhhccCcccceEEEEEEeccCCCCCCC
Q 019274           83 RVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNV  162 (343)
Q Consensus        83 ~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~~~~Ll~~~~~~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~  162 (343)
                      +|++|..++  ++++.+..++++++||+||+|+|+..+.+|+++..   ....+.++++.+.+..++++.++++.. + .
T Consensus       220 ~V~~i~~~~--~~~~~~~~~~~~~~ad~vI~a~p~~~~~~ll~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~  292 (434)
T PRK07233        220 PVTSVVIDG--GGVTGVEVDGEEEDFDAVISTAPPPILARLVPDLP---ADVLARLRRIDYQGVVCMVLKLRRPLT-D-Y  292 (434)
T ss_pred             CeeEEEEcC--CceEEEEeCCceEECCEEEECCCHHHHHhhcCCCc---HHHHhhhcccCccceEEEEEEecCCCC-C-C
Confidence            999999877  56666666677899999999999999988885421   234456677888888899999998764 2 1


Q ss_pred             cceeecCCC-CccceEeeccccccccCCCCCeEEEEE-eeC-CCCCCCCCHHHHHHHHHHHHhhhcccCCCCceeeeEEE
Q 019274          163 SNACSGFGD-SLAWTFFDLNKIYDEHKDDSATVIQAD-FYH-ANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIR  239 (343)
Q Consensus       163 ~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~i~~~-~~~-~~~~~~~~~~e~~~~~~~~L~~~~p~~~~~~~~~~~~~  239 (343)
                      +.... .+. .....++..+...+...+++.+++.+. +.. ...+..++++++++.++++|++++|++....++...+.
T Consensus       293 ~~~~~-~~~~~~~~~~~~~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~p~~~~~~~~~~~~~  371 (434)
T PRK07233        293 YWLNI-NDPGAPFGGVIEHTNLVPPERYGGEHLVYLPKYLPGDHPLWQMSDEELLDRFLSYLRKMFPDFDRDDVRAVRIS  371 (434)
T ss_pred             ceeee-cCCCCCcceEEEecccCCccccCCceEEEEeeecCCCChhhcCCHHHHHHHHHHHHHHhCCCCChhheeeEEEE
Confidence            11111 111 111112333333222221344443332 222 22334568899999999999999998754467788889


Q ss_pred             ecCCCccccCCCCCCCCCCCCCCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHHHhC
Q 019274          240 RFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG  301 (343)
Q Consensus       240 r~~~~~~~~~~g~~~~~p~~~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~~~~  301 (343)
                      +|+.+.+.+.||....++...++++|||||||+....++ ++|++|+.||..||++|++.++
T Consensus       372 r~~~a~~~~~~g~~~~~~~~~~~~~~l~~aG~~~~~~~~-~~~~~Ai~sG~~aA~~i~~~~~  432 (434)
T PRK07233        372 RAPYAQPIYEPGYLDKIPPYDTPIEGLYLAGMSQIYPED-RSINGSVRAGRRVAREILEDRR  432 (434)
T ss_pred             EeccccccccCchhhcCCCcccCcCCEEEeCCcccCCcc-CchhHHHHHHHHHHHHHhhhhc
Confidence            999999988888666667777788999999996443344 5899999999999999998765

>PRK07208 hypothetical protein; Provisional

Probab=99.93  E-value=6.3e-24  Score=204.75  Aligned_cols=299  Identities=16%  Similarity=0.152  Sum_probs=204.8

Q ss_pred             CCCCHHHHHHhHHHHHHhhhcCCcccccHHHHHHHH---------HHHHHhc---------C-C--CceeEeecCCCchh
Q 019274            4 FGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGIL---------YFIILAH---------Q-K--NFDLVWCRGTLREK   62 (343)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l---------~~~~~~~---------~-~--~~~~~~~~gG~~~~   62 (343)
                      +++++++++.+++|++.++|+.+++++|+.+++..+         ...+...         . .  ...+.+|+||+ +.
T Consensus       141 ~~~g~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gG~-~~  219 (479)
T PRK07208        141 NRFGRRLYSTFFKGYTEKVWGVPCDEISADWAAQRIKGLSLGKAIRNALRRSLGLKRRNKEVETSLIEEFRYPKLGP-GQ  219 (479)
T ss_pred             HhhCHHHHHHHHHHhhhhhhCCChHHCCChHHhCcccCCCHHHHHHHHhhhcccccccCCCccccceeEEeCCCCCc-ch
Confidence            478999999999999999999999999998754322         2111110         0 0  13567899996 56


Q ss_pred             hhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC---Ce--EEecCEEEEeeChhhHHHhhhhhcccCchhHHh
Q 019274           63 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG---KE--TYSAGAVVLAVGISTLQELIKNSILCNREEFLK  137 (343)
Q Consensus        63 l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~---g~--~~~ad~VV~a~p~~~~~~Ll~~~~~~~~~~~~~  137 (343)
                      |+++|++.+++.|++|++|++|++|..+++ +.++.+..+   |+  ++.||+||+|+|+..+.+++.+. ++ ....+.
T Consensus       220 l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~-~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~~l~~~l~~~-~~-~~~~~~  296 (479)
T PRK07208        220 LWETAAEKLEALGGKVVLNAKVVGLHHDGD-GRIAVVVVNDTDGTEETVTADQVISSMPLRELVAALDPP-PP-PEVRAA  296 (479)
T ss_pred             HHHHHHHHHHHcCCEEEeCCEEEEEEEcCC-cEEEEEEEEcCCCCEEEEEcCEEEECCCHHHHHHhcCCC-CC-HHHHHH
Confidence            999999999999999999999999999874 444445442   32  58999999999999998887643 22 344556


Q ss_pred             hccCcccceEEEEEEeccCCCCCCCcceeec-CCCCccceEeeccccccccCCCCC-eEEEEEee--CCCCCCCCCHHHH
Q 019274          138 VLNLASIDVVSVKLWFDKKVTVPNVSNACSG-FGDSLAWTFFDLNKIYDEHKDDSA-TVIQADFY--HANELMPLKDDQV  213 (343)
Q Consensus       138 ~~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~-~~i~~~~~--~~~~~~~~~~~e~  213 (343)
                      ++.+.+.++.+++++++++...+. ...++. .+... ..+...+...+...+++. ..+.+.++  ...+...++++++
T Consensus       297 ~~~l~~~~~~~v~l~~~~~~~~~~-~~~~~~~~~~~~-~r~~~~~~~~~~~~p~g~~~~l~~~~~~~~~~~~~~~~deel  374 (479)
T PRK07208        297 AAGLRYRDFITVGLLVKELNLFPD-NWIYIHDPDVKV-GRLQNFNNWSPYLVPDGRDTWLGLEYFCFEGDDLWNMSDEDL  374 (479)
T ss_pred             HhCCCcceeEEEEEEecCCCCCCC-ceEEecCCCCcc-ceecccccCCcccCCCCCceEEEEEEEccCCCccccCCHHHH
Confidence            677888888899999998754322 111111 11000 001111111122222233 33333332  3344557789999


Q ss_pred             HHHHHHHHhhhcccCCCCceeeeEEEecCCCccccCCCCCCCCCC---CCCCCCCeEEeeccccCCCCCccchHHHHHHH
Q 019274          214 VAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMR---GFTSFPNLFMAGDWITTRHGSWSQERSYVTGL  290 (343)
Q Consensus       214 ~~~~~~~L~~~~p~~~~~~~~~~~~~r~~~~~~~~~~g~~~~~p~---~~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~  290 (343)
                      ++.++++|.++.+ +.+.+++..++.+|+.++|.|.+++....+.   ..++.+|||++|++....+  .+|++|+.||.
T Consensus       375 ~~~~~~~L~~l~~-~~~~~~~~~~v~r~~~a~P~y~~~~~~~~~~~~~~~~~~~~l~laGr~~~~~~--~~~d~a~~sg~  451 (479)
T PRK07208        375 IALAIQELARLGL-IRPADVEDGFVVRVPKAYPVYDGTYERNVEIIRDLLDHFPNLHLVGRNGMHRY--NNQDHSMLTAM  451 (479)
T ss_pred             HHHHHHHHHHcCC-CChhheeEEEEEEecCcccCCCchHHHHHHHHHHHHHhcCCceeecccccccc--CChhHHHHHHH
Confidence            9999999999854 3233788888999999999999886543221   2246789999998853233  58999999999


Q ss_pred             HHHHHHHHHhCCCCcccccccCCC
Q 019274          291 EAANRVVDYLGDGSFSKIIPVEED  314 (343)
Q Consensus       291 ~aA~~il~~~~~~~~~~~~~~~~~  314 (343)
                      .+|+.|++..   .++++||++.|
T Consensus       452 ~~a~~i~~~~---~~~~~~~~~~~  472 (479)
T PRK07208        452 LAVENIIAGE---TKHDIWQVNTE  472 (479)
T ss_pred             HHHHHHhcCC---ccCCceEeccc
Confidence            9999998873   34578998774

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=99.93  E-value=4.5e-24  Score=198.39  Aligned_cols=278  Identities=18%  Similarity=0.212  Sum_probs=200.4

Q ss_pred             ccCCCCHHHHHHhHHHHHHhhhcCCcccccHHHHHHHHHHHHHhcC------------C----CceeEeecCCCchhhhH
Q 019274            2 IQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQ------------K----NFDLVWCRGTLREKIFE   65 (343)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~~~~------------~----~~~~~~~~gG~~~~l~~   65 (343)
                      -++++|+++++++++|++.++|+.+++++|+....+.+....-...            .    ...+++++||+ ++|++
T Consensus       141 ~r~~fG~ev~~~~~~pll~giy~~~~~~LS~~~~~p~~~~~e~~~~s~~~g~~~~~~~~~~~~~~~~~~~~gG~-~~l~~  219 (444)
T COG1232         141 IRRRFGEEVVERFIEPLLEGIYAGDADKLSAAAAFPILARAERKYGSLLRGAKKEGLPKQSLKKEKFGYLRGGL-QSLIE  219 (444)
T ss_pred             HHHHHhHHHHHHHHHHHhhchhcCCHHHhhHHHhcchhhhhhhhhcchhhhhhhccCcccccccccccccCccH-HHHHH
Confidence            3678999999999999999999999999999966665544311100            0    12467789996 67999


Q ss_pred             HHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhhHHHhhhhhcccCchhHHhhccCcccc
Q 019274           66 PWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASID  145 (343)
Q Consensus        66 ~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~~~~Ll~~~~~~~~~~~~~~~~l~~~~  145 (343)
                      +|++.++..   |+++++|++|..++. + .+.+..+|+.++||.||+|+|++.+.+++++..     ..+.+.++.+.+
T Consensus       220 al~~~l~~~---i~~~~~V~~i~~~~~-~-~~~~~~~g~~~~~D~VI~t~p~~~l~~ll~~~~-----~~~~~~~~~~~s  289 (444)
T COG1232         220 ALAEKLEAK---IRTGTEVTKIDKKGA-G-KTIVDVGGEKITADGVISTAPLPELARLLGDEA-----VSKAAKELQYTS  289 (444)
T ss_pred             HHHHHhhhc---eeecceeeEEEEcCC-c-cEEEEcCCceEEcceEEEcCCHHHHHHHcCCcc-----hhhhhhhccccc
Confidence            999999764   999999999999863 3 345555678899999999999999999998732     234567788888


Q ss_pred             eEEEEEEeccCC--CCCCCcceeecCCCC-ccceEeeccccccccCCCCCeEEEEEee-CCC-CCCCCCHHHHHHHHHHH
Q 019274          146 VVSVKLWFDKKV--TVPNVSNACSGFGDS-LAWTFFDLNKIYDEHKDDSATVIQADFY-HAN-ELMPLKDDQVVAKAVSY  220 (343)
Q Consensus       146 ~~~v~l~~~~~~--~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~i~~~~~-~~~-~~~~~~~~e~~~~~~~~  220 (343)
                      ++++.++++.+.  ..+..++.++..+.. ..-++++ ++..|...+.+..++.+.++ ..+ ....+++||+.+.++++
T Consensus       290 ~~~vv~~~~~~~~~~~~~~~g~~iad~~~~~~a~~~~-S~~~p~~~p~g~~ll~~~~~~~g~~~~~~~~dee~~~~~l~~  368 (444)
T COG1232         290 VVTVVVGLDEKDNPALPDGYGLLIADDDPYILAITFH-SNKWPHEAPEGKTLLRVEFGGPGDESVSTMSDEELVAAVLDD  368 (444)
T ss_pred             eEEEEEEeccccccCCCCceEEEEecCCCcceeEEEe-cccCCCCCCCCcEEEEEEeecCCCcchhccCHHHHHHHHHHH
Confidence            888988898862  212223333322212 2222333 33333222125566666554 333 23457799999999999


Q ss_pred             HhhhcccCCCCceeeeEEEecCCCccccCCCCCCCCC----CCCCCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHH
Q 019274          221 LSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMM----RGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRV  296 (343)
Q Consensus       221 L~~~~p~~~~~~~~~~~~~r~~~~~~~~~~g~~~~~p----~~~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~i  296 (343)
                      |.++++...+  .+...++||+.++|+|.+|+..++.    .....++|++.+|.|.. +   -++.+|+.+|..||+.|
T Consensus       369 L~~~~~~~~~--~~~~~v~r~~~~~PqY~vG~~~~~~~ir~~l~~~y~gi~~~G~~~~-g---~g~~d~I~~g~~aa~~l  442 (444)
T COG1232         369 LKKLGGINGD--PVFVEVTRWKYAMPQYEVGHLDRLEPIRAALKGAYPGIKSVGRYGE-G---VGLPDCIAAGKEAAEQL  442 (444)
T ss_pred             HHHHcCcCcc--hhheeeeeccccCCccchhHHHHHHHHHHhhccccCCeEEeccCCC-C---CCchHHHHHHHHHHHHh
Confidence            9999998764  4477899999999999999865433    23334589999999954 2   26789999999999988


Q ss_pred             H
Q 019274          297 V  297 (343)
Q Consensus       297 l  297 (343)
                      +
T Consensus       443 ~  443 (444)
T COG1232         443 L  443 (444)
T ss_pred             h
Confidence            6

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=99.92  E-value=2.6e-23  Score=199.71  Aligned_cols=282  Identities=15%  Similarity=0.166  Sum_probs=198.7

Q ss_pred             cCCCCHHHHHHhHHHHHHhhhcCCcccccHHHHHHHHHHHH----------Hhc---C-----------CCceeEeecCC
Q 019274            3 QFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFII----------LAH---Q-----------KNFDLVWCRGT   58 (343)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~----------~~~---~-----------~~~~~~~~~gG   58 (343)
                      ++++++++++++++|++.++|+.+++++|+.++++.+....          ...   +           .+..+..++||
T Consensus       144 ~~~~g~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG  223 (462)
T TIGR00562       144 RRRFGDEVVENLIEPLLSGIYAGDPSKLSLKSTFPKFYQTEQKHGSLILGMKKTRNLPQGSGLQLTAKKQGQDFQTLATG  223 (462)
T ss_pred             HHhcCHHHHHHHHHHHhcccccCCHHHhhHHHHhHHHHHHHHhcCcHHHHHHhhcccCccccccccccccCCceEecchh
Confidence            35689999999999999999999999999998776543221          000   0           01114457899


Q ss_pred             CchhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhHHHhhhhhcccCchhHHh
Q 019274           59 LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQELIKNSILCNREEFLK  137 (343)
Q Consensus        59 ~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~~~Ll~~~~~~~~~~~~~  137 (343)
                      + ++|+++|++.+.  .++|+++++|++|..++  ++ +.|+++ |++++||+||+|+|++.+.+|+++..   ....+.
T Consensus       224 ~-~~l~~~l~~~l~--~~~i~~~~~V~~I~~~~--~~-~~v~~~~g~~~~ad~VI~t~P~~~~~~ll~~~~---~~~~~~  294 (462)
T TIGR00562       224 L-ETLPEEIEKRLK--LTKVYKGTKVTKLSHRG--SN-YTLELDNGVTVETDSVVVTAPHKAAAGLLSELS---NSASSH  294 (462)
T ss_pred             H-HHHHHHHHHHhc--cCeEEcCCeEEEEEecC--Cc-EEEEECCCcEEEcCEEEECCCHHHHHHHhcccC---HHHHHH
Confidence            5 679999998885  27899999999999876  44 456665 56899999999999999999987531   345577


Q ss_pred             hccCcccceEEEEEEeccCCCCCCC--cceeecCCC---CccceEeeccccccccCCCCCeEEEEEee--CCCCCCCCCH
Q 019274          138 VLNLASIDVVSVKLWFDKKVTVPNV--SNACSGFGD---SLAWTFFDLNKIYDEHKDDSATVIQADFY--HANELMPLKD  210 (343)
Q Consensus       138 ~~~l~~~~~~~v~l~~~~~~~~~~~--~~~~~~~~~---~~~~~~~d~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~  210 (343)
                      +.++.+.++.++++.|+++.+....  +..+...+.   ...+ +++.+ ..+...+++..++.+.+.  .+.++.++++
T Consensus       295 l~~l~~~~~~~v~l~~~~~~~~~~~~~~g~l~~~~~~~~~~~~-i~~s~-~~p~~~p~g~~~l~~~~~g~~~~~~~~~~~  372 (462)
T TIGR00562       295 LDKIHSPPVANVNLGFPEGSVDGELEGFGFLISRSSKFAILGC-IFTSK-LFPNRAPPGKTLLTAYIGGATDESIVDLSE  372 (462)
T ss_pred             HhcCCCCceEEEEEEEchHHcCCCCCceEEEccCCCCCceEEE-EEEcc-ccCCcCCCCcEEEEEEeCCCCCccccCCCH
Confidence            8889999999999999876442211  111211111   1122 34432 223222234445433332  2345567789


Q ss_pred             HHHHHHHHHHHhhhcccCCCCceeeeEEEecCCCccccCCCCCCCCCC----CCCCCCCeEEeeccccCCCCCccchHHH
Q 019274          211 DQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMR----GFTSFPNLFMAGDWITTRHGSWSQERSY  286 (343)
Q Consensus       211 ~e~~~~~~~~L~~~~p~~~~~~~~~~~~~r~~~~~~~~~~g~~~~~p~----~~~~~~~L~laGd~~~~g~~~~~~ega~  286 (343)
                      +++++.++++|.++++. .. ++....+.+|+.+.|.|.+|+....+.    .....+|||+||+|..   + .+|++|+
T Consensus       373 ee~~~~v~~~L~~~~gi-~~-~p~~~~v~rw~~a~P~~~~g~~~~~~~i~~~l~~~~~~l~l~G~~~~---g-~~i~~~i  446 (462)
T TIGR00562       373 NEIINIVLRDLKKVLNI-NN-EPEMLCVTRWHRAIPQYHVGHDQRLKEARELLESAYPGVFLTGNSFE---G-VGIPDCI  446 (462)
T ss_pred             HHHHHHHHHHHHHHhCC-CC-CCcEEEEeEccccCCCCCCChHHHHHHHHHHHHhhCCCEEEeccccC---C-CcHHHHH
Confidence            99999999999999973 33 467778999999999999987443222    2234579999999975   2 4799999


Q ss_pred             HHHHHHHHHHHHHhC
Q 019274          287 VTGLEAANRVVDYLG  301 (343)
Q Consensus       287 ~Sg~~aA~~il~~~~  301 (343)
                      .||..+|++|++.+.
T Consensus       447 ~sg~~~a~~~~~~~~  461 (462)
T TIGR00562       447 DQGKAAASDVLTFLF  461 (462)
T ss_pred             HHHHHHHHHHHHhhc
Confidence            999999999988653

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=99.92  E-value=4.1e-23  Score=198.27  Aligned_cols=278  Identities=15%  Similarity=0.148  Sum_probs=193.4

Q ss_pred             CCCCHHHHHHhHHHHHHhhhcCCcccccHHHHHHHHHHHHH----------h------cCCCceeEeecCCCchhhhHHH
Q 019274            4 FGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIIL----------A------HQKNFDLVWCRGTLREKIFEPW   67 (343)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~----------~------~~~~~~~~~~~gG~~~~l~~~l   67 (343)
                      +++++++.+++++|++.++|+.+++++|+..+++.+..+.-          .      ......+.+++||+ +.|+++|
T Consensus       154 ~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~gG~-~~l~~~l  232 (463)
T PRK12416        154 SFLGKELVERQIAPVLSGVYSGKLNELTMASTLPYLLDYKNKYGSIIKGFEENKKQFQSAGNKKFVSFKGGL-STIIDRL  232 (463)
T ss_pred             HhcCHHHHHHHHHHHhcccccCCcccccHHHhhHHHHHHHHhcCcHHHHHHHhhhccCCCCCCceEeeCCCH-HHHHHHH
Confidence            46889999999999999999999999998876655433210          0      01123356789996 6799999


Q ss_pred             HHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhHHHhhhhhcccCchhHHhhccCcccce
Q 019274           68 MDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDV  146 (343)
Q Consensus        68 ~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~~~Ll~~~~~~~~~~~~~~~~l~~~~~  146 (343)
                      ++.+++  ++|++|++|++|..++  ++ +.|++. |++++||+||+|+|++.+.+|+.++.+     ...+.++.+.++
T Consensus       233 ~~~l~~--~~i~~~~~V~~I~~~~--~~-~~v~~~~g~~~~ad~VI~a~p~~~~~~ll~~~~l-----~~~~~~~~~~~~  302 (463)
T PRK12416        233 EEVLTE--TVVKKGAVTTAVSKQG--DR-YEISFANHESIQADYVVLAAPHDIAETLLQSNEL-----NEQFHTFKNSSL  302 (463)
T ss_pred             HHhccc--ccEEcCCEEEEEEEcC--CE-EEEEECCCCEEEeCEEEECCCHHHHHhhcCCcch-----hHHHhcCCCCce
Confidence            999864  6899999999999887  55 456665 567899999999999999888865322     234567788899


Q ss_pred             EEEEEEeccCCCC-CC-CcceeecCCCCc--cceEeeccccccccCCCCCeEEEEEeeC-----CCCCCCCCHHHHHHHH
Q 019274          147 VSVKLWFDKKVTV-PN-VSNACSGFGDSL--AWTFFDLNKIYDEHKDDSATVIQADFYH-----ANELMPLKDDQVVAKA  217 (343)
Q Consensus       147 ~~v~l~~~~~~~~-~~-~~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~~~~i~~~~~~-----~~~~~~~~~~e~~~~~  217 (343)
                      .+++++|+.+.+. +. .++.+.......  ..+.+. ++..+.-. ++..++...+..     .+++.+++++++.+.+
T Consensus       303 ~~v~l~~~~~~~~~~~~g~G~l~~~~~~~~~~~~~~~-s~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~dee~~~~~  380 (463)
T PRK12416        303 ISIYLGFDILDEQLPADGTGFIVTENSDLHCDACTWT-SRKWKHTS-GKQKLLVRMFYKSTNPVYETIKNYSEEELVRVA  380 (463)
T ss_pred             EEEEEEechhhcCCCCCceEEEeeCCCCCeEEEEEee-cCCCCCcC-CCCeEEEEEEeCCCCCCchhhhcCCHHHHHHHH
Confidence            9999999976431 11 112222211111  011121 11111111 344444333432     2345677899999999


Q ss_pred             HHHHhhhcccCCCCceeeeEEEecCCCccccCCCCCCCC----CCCCCCCCCeEEeeccccCCCCCccchHHHHHHHHHH
Q 019274          218 VSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYM----MRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAA  293 (343)
Q Consensus       218 ~~~L~~~~p~~~~~~~~~~~~~r~~~~~~~~~~g~~~~~----p~~~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA  293 (343)
                      +++|+++|+.. . +++...+.+|..++|.|.+|+....    +....+.+|||+||+++. |   .+|++|+.||+.+|
T Consensus       381 ~~~L~~~lG~~-~-~p~~~~v~~W~~a~P~y~~~~~~~~~~~~~~l~~~~~~l~~aG~~~~-g---~~i~~ai~sg~~aA  454 (463)
T PRK12416        381 LYDIEKSLGIK-G-EPEVVEVTNWKDLMPKYHLEHNQAVQSLQEKMMNLYPNIYLAGASYY-G---VGIGACIGNGKNTA  454 (463)
T ss_pred             HHHHHHHhCCC-C-CceEEEEEEccccCCCcCcCHHHHHHHHHHHHHhhCCCeEEeccccc-c---ccHHHHHHHHHHHH
Confidence            99999999743 3 6778889999999999988863321    122234689999999976 2   47899999999999


Q ss_pred             HHHHHHh
Q 019274          294 NRVVDYL  300 (343)
Q Consensus       294 ~~il~~~  300 (343)
                      ++|++.+
T Consensus       455 ~~i~~~~  461 (463)
T PRK12416        455 NEIIATL  461 (463)
T ss_pred             HHHHHHh
Confidence            9998764

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=99.91  E-value=1.8e-22  Score=195.09  Aligned_cols=279  Identities=14%  Similarity=0.154  Sum_probs=177.0

Q ss_pred             CCHHHHHHhHHHHHHhhhcCCcccccHHHHHHHHHHHHHhcCCCceeEeecCCCchhhhHHHHHHHHHcCCeEEcceeee
Q 019274            6 CSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVT   85 (343)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~~~~~~~~~~~~~gG~~~~l~~~l~~~l~~~G~~i~~~~~V~   85 (343)
                      +.++.++.++...+....+.++++.++...+.++...   +. .....+++||+ +.|+++|++.++++|++|+++++|+
T Consensus       182 ~~~~~lr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~G~~~~~GG~-~~l~~aL~~~~~~~G~~i~~~~~V~  256 (492)
T TIGR02733       182 GDDRRLRRFLDLQLKLYSQEDADETAALYGATVLQMA---QA-PHGLWHLHGSM-QTLSDRLVEALKRDGGNLLTGQRVT  256 (492)
T ss_pred             CccHHHHHHHHHHHhhhccCChhhhhHHHHHHHhhcc---cc-CCCceeecCcH-HHHHHHHHHHHHhcCCEEeCCceEE
Confidence            4566667777665544445667777776654443321   11 11235689995 6799999999999999999999999


Q ss_pred             EEEecCCCCeEEEEEEC-C-----eEEecCEEEEeeChhhHHHhhhhhcccCchhHHhhccCcccc-eEEEEEEeccCC-
Q 019274           86 DFIYDEERCCISDVVCG-K-----ETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASID-VVSVKLWFDKKV-  157 (343)
Q Consensus        86 ~I~~~~~~g~v~~V~~~-g-----~~~~ad~VV~a~p~~~~~~Ll~~~~~~~~~~~~~~~~l~~~~-~~~v~l~~~~~~-  157 (343)
                      +|..++  +++.+|++. +     ++++||+||+|+|+..+.+|+++..++ ....+.++++.+.+ .+++++++++.. 
T Consensus       257 ~I~~~~--~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~~~~~ll~~~~~~-~~~~~~~~~~~~s~~~~~v~l~~~~~~~  333 (492)
T TIGR02733       257 AIHTKG--GRAGWVVVVDSRKQEDLNVKADDVVANLPPQSLLELLGPLGLP-PGYRKRLKKLPEPSGAFVFYLGVKRAAL  333 (492)
T ss_pred             EEEEeC--CeEEEEEEecCCCCceEEEECCEEEECCCHHHHHHhcCcccCC-HHHHHHHhcCCCCCceEEEEEeeccccc
Confidence            999987  666667653 3     578999999999999998888754332 23445567777664 567899998742 


Q ss_pred             CCCCCcceeecCCCCccceEeeccccccccCCCCCeEEEEE-eeCCCC--------CCCCCHHHHHHHHHHHHhhhcccC
Q 019274          158 TVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQAD-FYHANE--------LMPLKDDQVVAKAVSYLSKCIKDF  228 (343)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~~-~~~~~~--------~~~~~~~e~~~~~~~~L~~~~p~~  228 (343)
                      ....+....+.++.. ...+...+...+..++++.+.+.+. +.+...        |.. .++++.+.+++.|++.+|++
T Consensus       334 ~~~~~~~~~~~~~~~-~~~~v~~~~~d~~~aP~G~~~l~~~~~~~~~~~~~~~~~~y~~-~k~~~~~~il~~le~~~p~l  411 (492)
T TIGR02733       334 PVDCPPHLQFLSDHQ-GSLFVSISQEGDGRAPQGEATLIASSFTDTNDWSSLDEEDYTA-KKKQYTQTIIERLGHYFDLL  411 (492)
T ss_pred             CCCCCcceeeccCCC-ceEEEEeCCccccCCCCCceEEEEEcCCCHHHHcCCCHHHHHH-HHHHHHHHHHHHHHHHCCCc
Confidence            111111111122211 1112222222233343455655332 222112        222 25668999999999999999


Q ss_pred             CCCceeeeEEEecCCCcccc-----------CC--CCC-CCCCCCCCCCCCeEEeeccccCCCCCccchHHHHHHHHHHH
Q 019274          229 STATVMDHKIRRFPKSLTHF-----------FP--GSY-KYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAAN  294 (343)
Q Consensus       229 ~~~~~~~~~~~r~~~~~~~~-----------~~--g~~-~~~p~~~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~  294 (343)
                      ++ +++...+. +|.++..+           ..  +.. ..++..+++++|||+||+++++|   +++.|++.||+.||+
T Consensus       412 ~~-~i~~~~v~-TP~t~~~~~~~~~G~~~G~~~~~~q~~~~~~~~~t~i~gLyl~G~~~~pG---~Gv~g~~~sg~~~a~  486 (492)
T TIGR02733       412 EE-NWVHVELA-TPRTFERWTGRPQGIVGGLGQRPSTFGPFGLSSRTPVKGLWLCGDSIHPG---EGTAGVSYSALMVVR  486 (492)
T ss_pred             cc-cEEEEEcc-CCchHHHHhCCCCcEECCCCcCccccCCcCCCCCCCCCCeEEecCccCCC---CcHHHHHHHHHHHHH
Confidence            87 66665543 44433222           11  110 12334467999999999998765   467899999999999


Q ss_pred             HHHHH
Q 019274          295 RVVDY  299 (343)
Q Consensus       295 ~il~~  299 (343)
                      .|++.
T Consensus       487 ~i~~~  491 (492)
T TIGR02733       487 QILAS  491 (492)
T ss_pred             HHhhc
Confidence            99863

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>PLN02576 protoporphyrinogen oxidase

Probab=99.91  E-value=1.8e-22  Score=195.54  Aligned_cols=282  Identities=14%  Similarity=0.213  Sum_probs=192.9

Q ss_pred             CCCCHHHHHHhHHHHHHhhhcCCcccccHHHHHHHHHHHH-----------Hh--c----------------CCCceeEe
Q 019274            4 FGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFII-----------LA--H----------------QKNFDLVW   54 (343)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~-----------~~--~----------------~~~~~~~~   54 (343)
                      +++++++++++++|++.++|+.+++++|+..+++.+....           ..  .                ..+..+..
T Consensus       154 ~~~g~~~~~~~~~p~~~~~~~~~~~~lS~~~~~~~~~~~e~~~gs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (496)
T PLN02576        154 RHLGDEVFERLIDPFVSGVYAGDPSSLSMKAAFPKLWNLEKRGGSIIGGAIKAIQEAKKNPKPEPRDPRLPKPKGQTVGS  233 (496)
T ss_pred             HhcCHHHHHHHHHHHhCceecCCHHHHhHHHHhHHHHHHHHhcCcHHHHHHHhhhhhcccccccccccccccccCCeeEe
Confidence            4689999999999999999999999999998776644320           00  0                01122345


Q ss_pred             ecCCCchhhhHHHHHHHHHcC-CeEEcceeeeEEEecCCCCeEEEEEEC---C-eEEecCEEEEeeChhhHHHhhhhhcc
Q 019274           55 CRGTLREKIFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVCG---K-ETYSAGAVVLAVGISTLQELIKNSIL  129 (343)
Q Consensus        55 ~~gG~~~~l~~~l~~~l~~~G-~~i~~~~~V~~I~~~~~~g~v~~V~~~---g-~~~~ad~VV~a~p~~~~~~Ll~~~~~  129 (343)
                      ++||+ +.|+++|++.+   + ++|++|++|++|..+++ ++ +.|++.   | ++++||+||+|+|+..+.+|+.+.. 
T Consensus       234 ~~gG~-~~L~~~la~~l---~~~~i~l~~~V~~I~~~~~-~~-~~v~~~~~~g~~~~~ad~VI~a~P~~~l~~ll~~~~-  306 (496)
T PLN02576        234 FRGGL-QTLPDALAKRL---GKDKVKLNWKVLSLSKNDD-GG-YSLTYDTPEGKVNVTAKAVVMTAPLYVVSEMLRPKS-  306 (496)
T ss_pred             ccchH-HHHHHHHHHhh---CcCcEEcCCEEEEEEECCC-Cc-EEEEEecCCCceeEEeCEEEECCCHHHHHHHhcccC-
Confidence            68996 57999999877   4 68999999999998773 32 334432   4 3689999999999999999987532 


Q ss_pred             cCchhHHhhccCcccceEEEEEEeccCCCCCC-----C---cceeecCCCC---ccceEeeccccccccCCCCCeEEEEE
Q 019274          130 CNREEFLKVLNLASIDVVSVKLWFDKKVTVPN-----V---SNACSGFGDS---LAWTFFDLNKIYDEHKDDSATVIQAD  198 (343)
Q Consensus       130 ~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~-----~---~~~~~~~~~~---~~~~~~d~~~~~~~~~~~~~~~i~~~  198 (343)
                        +...+.+.++.|.++.++++.|+++.+...     +   +..+......   .++ +++ +...+...+++..++. .
T Consensus       307 --~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~lg~-~~~-s~~~p~~~~~~~~~l~-~  381 (496)
T PLN02576        307 --PAAADALPEFYYPPVAAVTTSYPKEAVKRERLIDGPLEGFGQLHPRKQGVKTLGT-IYS-SSLFPDRAPEGRVLLL-N  381 (496)
T ss_pred             --HHHHHHhccCCCCceEEEEEEEchHHcccccccCCCCCceEEEccCCCCCceEEE-Eee-cCcCCCCCCCCCEEEE-E
Confidence              345567788999999999999988754321     1   1111110000   111 233 2222322212333332 3


Q ss_pred             eeC---CCCCCCCCHHHHHHHHHHHHhhhcccCCCCceeeeEEEecCCCccccCCCCCCCCCCCCC---CC--CCeEEee
Q 019274          199 FYH---ANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFT---SF--PNLFMAG  270 (343)
Q Consensus       199 ~~~---~~~~~~~~~~e~~~~~~~~L~~~~p~~~~~~~~~~~~~r~~~~~~~~~~g~~~~~p~~~~---~~--~~L~laG  270 (343)
                      +..   ...+.+++++++++.++++|.++++......+....+.+|+.++|.|.+|+....+..+.   ..  +|||+||
T Consensus       382 ~~~~~~~~~~~~~s~ee~~~~~~~~L~~~~g~~~~~~p~~~~~~~w~~a~P~~~~g~~~~~~~~~~~l~~~~~~~l~~aG  461 (496)
T PLN02576        382 YIGGSRNTGIASASEEELVEAVDRDLRKLLLKPGAPPPKVVGVRVWPKAIPQYLLGHLDVLEAAEKMEKDLGLPGLFLGG  461 (496)
T ss_pred             EECCCCCcccccCCHHHHHHHHHHHHHHHhCCCCCCCCcEEEEeEcCcccCCCCcCHHHHHHHHHHHHHhcCCCCEEEec
Confidence            332   345667889999999999999999743211344556788999999999987543322211   22  7999999


Q ss_pred             ccccCCCCCccchHHHHHHHHHHHHHHHHhC
Q 019274          271 DWITTRHGSWSQERSYVTGLEAANRVVDYLG  301 (343)
Q Consensus       271 d~~~~g~~~~~~ega~~Sg~~aA~~il~~~~  301 (343)
                      +|+. |   .++++|+.||..+|++|+..+.
T Consensus       462 ~~~~-g---~~i~~ai~sg~~aA~~i~~~~~  488 (496)
T PLN02576        462 NYRG-G---VALGKCVESGYEAADLVISYLE  488 (496)
T ss_pred             cccC-C---ccHHHHHHHHHHHHHHHHHHHh
Confidence            9986 3   4789999999999999988754

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=99.91  E-value=2.2e-22  Score=192.66  Aligned_cols=276  Identities=17%  Similarity=0.171  Sum_probs=190.4

Q ss_pred             CCCCHHHHHHhHHHHHHhhhcCCcccccHHHHHHHHHHHHHh--------------c--CCCceeEeecCCCchhhhHHH
Q 019274            4 FGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILA--------------H--QKNFDLVWCRGTLREKIFEPW   67 (343)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~~--------------~--~~~~~~~~~~gG~~~~l~~~l   67 (343)
                      .++++++++.+++|++.++|+.+++++|+..++..+......              .  ..+..+.+++||+ +.|+++|
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~-~~l~~~l  227 (451)
T PRK11883        149 RRFGDEVVENLIEPLLSGIYAGDIDTLSLRATFPQLAQAEDKYGSLLRGMRKALPKEKKKTKGVFGTLKGGL-QSLIEAL  227 (451)
T ss_pred             HhccHHHHHHHHHHhhceeecCChHHccHHHhHHHHHHHHHhcCcHHHHHHhhccccCCCCCCceEeeccHH-HHHHHHH
Confidence            468899999999999999999999999998766544322100              0  0122455688995 6799999


Q ss_pred             HHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhHHHhhhhhcccCchhHHhhccCcccce
Q 019274           68 MDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDV  146 (343)
Q Consensus        68 ~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~~~Ll~~~~~~~~~~~~~~~~l~~~~~  146 (343)
                      ++.+++.  +|+++++|++|..++  +. +.|.+. |++++||+||+|+|+..+.+++.++     +..+.++++.+.++
T Consensus       228 ~~~l~~~--~i~~~~~V~~i~~~~--~~-~~v~~~~g~~~~~d~vI~a~p~~~~~~l~~~~-----~~~~~~~~~~~~~~  297 (451)
T PRK11883        228 EEKLPAG--TIHKGTPVTKIDKSG--DG-YEIVLSNGGEIEADAVIVAVPHPVLPSLFVAP-----PAFALFKTIPSTSV  297 (451)
T ss_pred             HHhCcCC--eEEeCCEEEEEEEcC--Ce-EEEEECCCCEEEcCEEEECCCHHHHHHhccCh-----hHHHHHhCCCCCce
Confidence            9887543  899999999999877  44 346654 6789999999999999999886542     23456778889999


Q ss_pred             EEEEEEeccCCCC-CCCcceeecCCCC--ccceEeeccccccccCCCCCeEEEEEee-CC-CCCCCCCHHHHHHHHHHHH
Q 019274          147 VSVKLWFDKKVTV-PNVSNACSGFGDS--LAWTFFDLNKIYDEHKDDSATVIQADFY-HA-NELMPLKDDQVVAKAVSYL  221 (343)
Q Consensus       147 ~~v~l~~~~~~~~-~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~i~~~~~-~~-~~~~~~~~~e~~~~~~~~L  221 (343)
                      .++++.+++++.. ...++.++..+..  .....++ +...+...+++..++...+. +. ....+++++++++.++++|
T Consensus       298 ~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~~~~~~p~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  376 (451)
T PRK11883        298 ATVALAFPESATNLPDGTGFLVARNSDYTITACTWT-SKKWPHTTPEGKVLLRLYVGRPGDEAVVDATDEELVAFVLADL  376 (451)
T ss_pred             EEEEEEeccccCCCCCceEEEecCCCCCcEEEEEeE-cCcCCCCCCCCcEEEEEecCCCCCchhccCCHHHHHHHHHHHH
Confidence            9999999987421 2222333332211  1122233 22222222123344333221 21 2234568999999999999


Q ss_pred             hhhcccCCCCceeeeEEEecCCCccccCCCCCCC----CCCCCCCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHH
Q 019274          222 SKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKY----MMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVV  297 (343)
Q Consensus       222 ~~~~p~~~~~~~~~~~~~r~~~~~~~~~~g~~~~----~p~~~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il  297 (343)
                      +++++.. . +++...+.+|..+.+.+.+++...    ++.... ++|||+||+|+.   + .++++|+.||+.+|++|+
T Consensus       377 ~~~~g~~-~-~~~~~~~~rw~~a~p~~~~~~~~~~~~l~~~l~~-~~~l~~aG~~~~---g-~~i~~av~sg~~~a~~i~  449 (451)
T PRK11883        377 SKVMGIT-G-DPEFTIVQRWKEAMPQYGVGHIERVAELRAGLPH-YPGLYVAGASFE---G-VGLPDCIAQAKRAAARLL  449 (451)
T ss_pred             HHHhCCC-C-CceEEEEeecCccCCCCCccHHHHHHHHHHhhhh-CCCEEEECcccC---C-ccHHHHHHHHHHHHHHHH
Confidence            9998643 2 456778899999999888886432    122222 679999999975   2 479999999999999997


Q ss_pred             H
Q 019274          298 D  298 (343)
Q Consensus       298 ~  298 (343)
                      .
T Consensus       450 ~  450 (451)
T PRK11883        450 A  450 (451)
T ss_pred             h
Confidence            5

>TIGR02734 crtI_fam phytoene desaturase

Probab=99.89  E-value=3e-21  Score=187.12  Aligned_cols=282  Identities=11%  Similarity=0.020  Sum_probs=176.1

Q ss_pred             CCHHHHHHhHHHHHHhhhcCCcccccHHHHHHHHHHHHHhcCCCceeEeecCCCchhhhHHHHHHHHHcCCeEEcceeee
Q 019274            6 CSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVT   85 (343)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~~~~~~~~~~~~~gG~~~~l~~~l~~~l~~~G~~i~~~~~V~   85 (343)
                      +.++.++.++. +....++.++++.++...+..+..+      .....+|+||+ ..++++|.+.++++|++|+++++|+
T Consensus       172 ~~~~~l~~~l~-~~~~~~g~~p~~~~~~~~l~~~~~~------~~g~~~~~gG~-~~l~~al~~~~~~~G~~i~~~~~V~  243 (502)
T TIGR02734       172 FSDERLRQAFS-FHALFLGGNPFRTPSIYALISALER------EWGVWFPRGGT-GALVAAMAKLAEDLGGELRLNAEVI  243 (502)
T ss_pred             cCCHHHHHHhc-ccceeeccCcccchHHHHHHHHHHh------hceEEEcCCCH-HHHHHHHHHHHHHCCCEEEECCeEE
Confidence            34444554544 2234556778787766543332221      12234788995 7899999999999999999999999


Q ss_pred             EEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhHH-HhhhhhcccCchhHHhhccCccc-ceEEEEEEecc---CCCC
Q 019274           86 DFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQ-ELIKNSILCNREEFLKVLNLASI-DVVSVKLWFDK---KVTV  159 (343)
Q Consensus        86 ~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~~-~Ll~~~~~~~~~~~~~~~~l~~~-~~~~v~l~~~~---~~~~  159 (343)
                      +|..++  +++++|+++ |++++||+||+|+++..+. .|++....+ ....+.++++++. +.++++++++.   .+..
T Consensus       244 ~i~~~~--~~~~~V~~~~g~~~~ad~VI~a~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~s~s~~~~~lgl~~~~~~~~~  320 (502)
T TIGR02734       244 RIETEG--GRATAVHLADGERLDADAVVSNADLHHTYRRLLPNHPRR-RYPAARLSRKRPSPSLFVLYFGLLGVDGHWPQ  320 (502)
T ss_pred             EEEeeC--CEEEEEEECCCCEEECCEEEECCcHHHHHHHhcCccccc-cccccccccCCcCCeeeEEEEeeccccCcCCC
Confidence            999887  778889887 5689999999999997765 566544321 1222344556644 67788999983   3321


Q ss_pred             CCCcceeecCCC--------------CccceEeec-cccccccCCCCCeEEEEEe-eCC-----CCCCCCCHHHHHHHHH
Q 019274          160 PNVSNACSGFGD--------------SLAWTFFDL-NKIYDEHKDDSATVIQADF-YHA-----NELMPLKDDQVVAKAV  218 (343)
Q Consensus       160 ~~~~~~~~~~~~--------------~~~~~~~d~-~~~~~~~~~~~~~~i~~~~-~~~-----~~~~~~~~~e~~~~~~  218 (343)
                      ...++.++..+.              .....+... +...+..++++.+.+.+.. .+.     ..|.. .++++.+.++
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~v~~~s~~dp~~aP~G~~~~~~~~~~~~~~~~~~~~~~-~k~~~~~~il  399 (502)
T TIGR02734       321 LAHHTLCFGPRYKELFDEIFRKGRLAEDPSLYLHRPTVTDPSLAPPGCENLYVLAPVPHLGTADVDWSV-EGPRYRDRIL  399 (502)
T ss_pred             cCceeEecCcCHHHHHHHHhcCCCCCCCCcEEEEcCCCCCCCCCCCCCccEEEEEeCCCCCCCCCCcHH-HHHHHHHHHH
Confidence            112333332110              001111111 1112334434555543322 221     12333 3677899999


Q ss_pred             HHHhhh-cccCCCCceeeeEEEecCC-----------CccccCCC---CCCCCCC-CCCCCCCeEEeeccccCCCCCccc
Q 019274          219 SYLSKC-IKDFSTATVMDHKIRRFPK-----------SLTHFFPG---SYKYMMR-GFTSFPNLFMAGDWITTRHGSWSQ  282 (343)
Q Consensus       219 ~~L~~~-~p~~~~~~~~~~~~~r~~~-----------~~~~~~~g---~~~~~p~-~~~~~~~L~laGd~~~~g~~~~~~  282 (343)
                      +.|++. +|++++ .++...+. +|.           +.++..+.   ....+|. ..++++|||+||+++++|   +++
T Consensus       400 ~~l~~~~~p~l~~-~i~~~~~~-TP~t~~~~~~~~~G~~~G~~~~~~q~~~~rp~~~~t~i~gLyl~G~~~~pG---~Gv  474 (502)
T TIGR02734       400 AYLEERAIPGLRD-RIVVERTF-TPADFRDRYNAWLGSAFSLEHTLTQSAWFRPHNRDRKIDNLYLVGAGTHPG---AGV  474 (502)
T ss_pred             HHHHHhcCCChhH-heEEEEEc-CHHHHHHhcCCCCccccchhhchhhcccCCCCCCCCCCCCEEEeCCCCCCC---CCH
Confidence            999998 999987 66665443 332           22222111   1123554 346899999999998765   467


Q ss_pred             hHHHHHHHHHHHHHHHHhCCCC
Q 019274          283 ERSYVTGLEAANRVVDYLGDGS  304 (343)
Q Consensus       283 ega~~Sg~~aA~~il~~~~~~~  304 (343)
                      .+++.||++||+.|+++.+.|.
T Consensus       475 ~g~~~sg~~~a~~il~~~~~~~  496 (502)
T TIGR02734       475 PGVLGSAKATAKLMLGDLAPGP  496 (502)
T ss_pred             HHHHHHHHHHHHHHHhhccCCC
Confidence            8899999999999999988666

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>TIGR02730 carot_isom carotene isomerase

Probab=99.88  E-value=1.9e-20  Score=180.92  Aligned_cols=281  Identities=16%  Similarity=0.138  Sum_probs=173.2

Q ss_pred             CHHHHHHhHHHHHHhhhcCCcccccHHHHHHHHHHHHHhcCCCceeEeecCCCchhhhHHHHHHHHHcCCeEEcceeeeE
Q 019274            7 SERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTD   86 (343)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~~~~~~~~~~~~~gG~~~~l~~~l~~~l~~~G~~i~~~~~V~~   86 (343)
                      .++.++.++...+......+++++++...+..+...     ......+|.||+ ..|+++|.+.++++|++|+++++|++
T Consensus       181 ~~~~l~~~l~~~~~~~~~~p~~~~p~~~~~~~~~~~-----~~~g~~~~~gG~-~~l~~~L~~~~~~~G~~i~~~~~V~~  254 (493)
T TIGR02730       181 RDPGLLKFIDIECFCWSVVPADQTPMINAGMVFSDR-----HYGGINYPKGGV-GQIAESLVKGLEKHGGQIRYRARVTK  254 (493)
T ss_pred             CCHHHHHHHHHHHHhccCCCcccchhhhHHHhhccc-----ccceEecCCChH-HHHHHHHHHHHHHCCCEEEeCCeeeE
Confidence            334444455443333323345677665554433211     112346789995 67999999999999999999999999


Q ss_pred             EEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhHH-HhhhhhcccCchhHHhhccCccc-ceEEEEEEeccCCCCC--C
Q 019274           87 FIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQ-ELIKNSILCNREEFLKVLNLASI-DVVSVKLWFDKKVTVP--N  161 (343)
Q Consensus        87 I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~~-~Ll~~~~~~~~~~~~~~~~l~~~-~~~~v~l~~~~~~~~~--~  161 (343)
                      |..++  +++++|+++ |++++||.||+|++++.+. +|++...++ ......++++++. +.++++++++....+.  .
T Consensus       255 I~~~~--~~~~gv~~~~g~~~~ad~vV~a~~~~~~~~~Ll~~~~~~-~~~~~~~~~~~~s~s~~~~~l~l~~~~~p~~~~  331 (493)
T TIGR02730       255 IILEN--GKAVGVKLADGEKIYAKRIVSNATRWDTFGKLLKAENLP-KKEKNWQRNYVKSPSFLSLHLGVKADVLPPGTE  331 (493)
T ss_pred             EEecC--CcEEEEEeCCCCEEEcCEEEECCChHHHHHHhCCccccc-hhhHHHHhhccCCCceEEEEEEecCccCCCCCC
Confidence            99887  788899986 6689999999999887765 687765432 2223334555544 5788999999854211  1


Q ss_pred             Ccceeec-CC---CCccceEeec-cccccccCCCCCeEEEEEe-eCCCCCCC-------CCHHHHHHHHHHHHhhhcccC
Q 019274          162 VSNACSG-FG---DSLAWTFFDL-NKIYDEHKDDSATVIQADF-YHANELMP-------LKDDQVVAKAVSYLSKCIKDF  228 (343)
Q Consensus       162 ~~~~~~~-~~---~~~~~~~~d~-~~~~~~~~~~~~~~i~~~~-~~~~~~~~-------~~~~e~~~~~~~~L~~~~p~~  228 (343)
                      .+..++. +.   ......+... +...+..++++.+++.+.. .+...|.+       ..++++.+.+++.|++++|++
T Consensus       332 ~~~~~~~~~~~~~~~~~~~~v~~ps~~dps~aP~G~~~i~~~~~~~~~~w~~~~~~~y~~~k~~~~~~il~~l~~~~p~l  411 (493)
T TIGR02730       332 CHHILLEDWTNLEKPQGTIFVSIPTLLDPSLAPEGHHIIHTFTPSSMEDWQGLSPKDYEAKKEADAERIIDRLEKIFPGL  411 (493)
T ss_pred             ccEEecchhhccCCCCCeEEEEeCCCCCCCCCcCCcEEEEEecCCChhhccCCCcHHHHHHHHHHHHHHHHHHHHHCCCh
Confidence            1222211 00   0111111111 2222334434555553322 11222221       125668999999999999999


Q ss_pred             CCCceeeeEEEecCCCccccC--C----CCC-------CCC-CCCCCCCCCeEEeeccccCCCCCccchHHHHHHHHHHH
Q 019274          229 STATVMDHKIRRFPKSLTHFF--P----GSY-------KYM-MRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAAN  294 (343)
Q Consensus       229 ~~~~~~~~~~~r~~~~~~~~~--~----g~~-------~~~-p~~~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~  294 (343)
                      ++ .++...+. +|.+...|.  +    |..       ..+ |..+++++|||+||+++++|   +++.+|+.||+.||+
T Consensus       412 ~~-~I~~~~~~-TP~t~~r~~~~~~G~~G~~~~~~~~~~~~~~~~~t~i~gLyl~G~~~~pG---~Gv~g~~~sG~~~a~  486 (493)
T TIGR02730       412 DS-AIDYKEVG-TPRTHRRFLGRDSGTYGPIPRRTLPGLLPMPFNRTAIPGLYCVGDSCFPG---QGLNAVAFSGFACAH  486 (493)
T ss_pred             hh-cEEEEEee-CchhHHHHhCCCCcccCCcccccccccccCCCCCCCCCCeEEecCcCCCC---CCHHHHHHHHHHHHH
Confidence            87 66655443 444332221  0    100       011 34568999999999998764   467899999999999


Q ss_pred             HHHHHhC
Q 019274          295 RVVDYLG  301 (343)
Q Consensus       295 ~il~~~~  301 (343)
                      .|+++++
T Consensus       487 ~i~~~~~  493 (493)
T TIGR02730       487 RVAADLG  493 (493)
T ss_pred             HHHhhcC
Confidence            9998753

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>PLN02268 probable polyamine oxidase

Probab=99.86  E-value=1.8e-20  Score=178.62  Aligned_cols=268  Identities=19%  Similarity=0.119  Sum_probs=177.1

Q ss_pred             CCCCHHHHHHhHHHHHHhhhcCCcccccHHHHHHHHHHHHHhcCCCceeEeecCCCchhhhHHHHHHHHHcCCeEEccee
Q 019274            4 FGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRR   83 (343)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~~~~~~~~~~~~~gG~~~~l~~~l~~~l~~~G~~i~~~~~   83 (343)
                      .++++++++.++.| +.+.++.+++++|+..+..   ...+.   +. ..++.+|+ +.|+++|++     +.+|++|++
T Consensus       153 ~~~~~~~~~~~~~~-~~~~~~~~~~~ls~~~~~~---~~~~~---g~-~~~~~~G~-~~l~~~l~~-----~~~i~~~~~  218 (435)
T PLN02268        153 EGLAHEVLQWYLCR-MEGWFAADADTISLKSWDQ---EELLE---GG-HGLMVRGY-DPVINTLAK-----GLDIRLNHR  218 (435)
T ss_pred             chHHHHHHHHHHHH-HHHHhCCChHhCchhhcCC---ccccC---CC-ceeecCCH-HHHHHHHhc-----cCceeCCCe
Confidence            34677788878788 4567899999999864211   00000   11 13456784 668887754     567999999


Q ss_pred             eeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhHHHh-hhh-hcccCchhHHhhccCcccceEEEEEEeccCCCCC
Q 019274           84 VTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQEL-IKN-SILCNREEFLKVLNLASIDVVSVKLWFDKKVTVP  160 (343)
Q Consensus        84 V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~~~L-l~~-~~~~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~  160 (343)
                      |++|...+  +.+ .|++. |+++.||+||+|+|+..+.++ +.. +.++ ....+.++++.+.+..++.+.|++++|..
T Consensus       219 V~~i~~~~--~~v-~v~~~~g~~~~ad~VIva~P~~~l~~~~i~f~p~lp-~~~~~ai~~~~~g~~~Kv~l~f~~~fw~~  294 (435)
T PLN02268        219 VTKIVRRY--NGV-KVTVEDGTTFVADAAIIAVPLGVLKANIIKFEPELP-EWKEEAISDLGVGIENKIALHFDSVFWPN  294 (435)
T ss_pred             eEEEEEcC--CcE-EEEECCCcEEEcCEEEEecCHHHHhcCcceecCCCC-HHHHHHHHhCCccceeEEEEEeCCCCCCC
Confidence            99999877  344 46665 568999999999999998753 222 2232 33457778888889999999999998743


Q ss_pred             CCcceeecCCC-C-ccceEeeccccccccCCCCCeEEEEEee--CCCCCCCCCHHHHHHHHHHHHhhhcccCCCCceeee
Q 019274          161 NVSNACSGFGD-S-LAWTFFDLNKIYDEHKDDSATVIQADFY--HANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDH  236 (343)
Q Consensus       161 ~~~~~~~~~~~-~-~~~~~~d~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~e~~~~~~~~L~~~~p~~~~~~~~~~  236 (343)
                       .  .+++... . .....++..  ..   .++..++.+...  .+..+..++++++.+.++++|.++||...  +++..
T Consensus       295 -~--~~~g~~~~~~~~~~~~~~~--~~---~~g~~~l~~~~~g~~a~~~~~~~~~e~~~~v~~~L~~~~~~~~--~p~~~  364 (435)
T PLN02268        295 -V--EFLGVVAPTSYGCSYFLNL--HK---ATGHPVLVYMPAGRLARDIEKLSDEAAANFAMSQLKKMLPDAT--EPVQY  364 (435)
T ss_pred             -C--ceeeccCCCCCCceEEEec--cc---CCCCCEEEEEeccHHHHHHHhCCHHHHHHHHHHHHHHHcCCCC--CccEE
Confidence             2  1223211 1 111122211  11   123344433222  23446678899999999999999998654  46677


Q ss_pred             EEEecCCCcc------ccCCCCCC-CCCCCCCCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHHHh
Q 019274          237 KIRRFPKSLT------HFFPGSYK-YMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYL  300 (343)
Q Consensus       237 ~~~r~~~~~~------~~~~g~~~-~~p~~~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~~~  300 (343)
                      .+++|...-+      .+.||... ..+....|+++|||||+++...++ ++|+||+.||++||++|++.+
T Consensus       365 ~~~~W~~dp~~~G~~~~~~~g~~~~~~~~l~~p~~~l~FAGe~ts~~~~-g~~eGA~~sG~raA~~v~~~l  434 (435)
T PLN02268        365 LVSRWGSDPNSLGCYSYDLVGKPHDLYERLRAPVDNLFFAGEATSSDFP-GSVHGAYSTGVMAAEECRMRL  434 (435)
T ss_pred             EecccCCCCCCCccCCCCCCCCCHHHHHHHhCCCCCeEEeeccCCCccc-ccHHHHHHHHHHHHHHHHHhh
Confidence            7888854321      12344321 223344678899999999987777 699999999999999998753

>PLN03000 amine oxidase

Probab=99.85  E-value=1.4e-19  Score=179.43  Aligned_cols=232  Identities=15%  Similarity=0.167  Sum_probs=157.0

Q ss_pred             eEeecCCCchhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhhHH--Hhhhhhcc
Q 019274           52 LVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQ--ELIKNSIL  129 (343)
Q Consensus        52 ~~~~~gG~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~~~--~Ll~~~~~  129 (343)
                      ....+|| ++.|+++|++.+     .|+++++|++|..++  +.| .|++++++++||+||+|+|+.++.  .+.-.+.+
T Consensus       373 ~~~v~GG-~~~LieaLa~~L-----~I~Ln~~Vt~I~~~~--dgV-~V~~~~~~~~AD~VIvTVPlgVLk~~~I~F~PpL  443 (881)
T PLN03000        373 HCFLPGG-NGRLVQALAENV-----PILYEKTVQTIRYGS--NGV-KVIAGNQVYEGDMVLCTVPLGVLKNGSIKFVPEL  443 (881)
T ss_pred             eEEeCCC-HHHHHHHHHhhC-----CcccCCcEEEEEECC--CeE-EEEECCcEEEeceEEEcCCHHHHhhCceeeCCCC
Confidence            3446799 477999999876     399999999999987  444 466666789999999999999998  33222234


Q ss_pred             cCchhHHhhccCcccceEEEEEEeccCCCCCCCcceeecCC---CC---ccceEeeccccccccCCCCCeEEEEEee--C
Q 019274          130 CNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFG---DS---LAWTFFDLNKIYDEHKDDSATVIQADFY--H  201 (343)
Q Consensus       130 ~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~---~~---~~~~~~d~~~~~~~~~~~~~~~i~~~~~--~  201 (343)
                      + ....++++++.+..+.++.+.|++++|....  ..+|+.   ..   ....+++.+   +   ..+..++.+...  .
T Consensus       444 P-~~K~~AI~rL~~G~l~KViL~Fd~~FW~~d~--~~FG~l~~~~~~rg~~~~f~s~s---p---~~G~pVLvafv~Gd~  514 (881)
T PLN03000        444 P-QRKLDCIKRLGFGLLNKVAMLFPYVFWSTDL--DTFGHLTEDPNYRGEFFLFYSYA---P---VAGGPLLIALVAGEA  514 (881)
T ss_pred             C-HHHHHHHHcCCCcceEEEEEEeCCccccCCC--CceeEEecCCCCCceeEEEeCCC---C---CCCCcEEEEEecCch
Confidence            2 3456788999999999999999999985321  122221   01   111112211   1   013334433222  2


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhhhccc--CCCCceeeeEEEecCCCcc------ccCCCCCC-CCCCCCCCC--CCeEEee
Q 019274          202 ANELMPLKDDQVVAKAVSYLSKCIKD--FSTATVMDHKIRRFPKSLT------HFFPGSYK-YMMRGFTSF--PNLFMAG  270 (343)
Q Consensus       202 ~~~~~~~~~~e~~~~~~~~L~~~~p~--~~~~~~~~~~~~r~~~~~~------~~~~g~~~-~~p~~~~~~--~~L~laG  270 (343)
                      +..+..++++++.+.+++.|+++|+.  ..-.+++...+++|...-+      .+.||... .......++  ++|||||
T Consensus       515 A~~le~lSdeE~ve~vl~~Lrkifg~~~~~vp~Pv~~ivtrW~~DPysrGSYS~~~pG~~~~~~d~LaePv~~GRIfFAG  594 (881)
T PLN03000        515 AHKFETMPPTDAVTRVLHILRGIYEPQGINVPDPLQTVCTRWGGDPFSLGSYSNVAVGASGDDYDILAESVGDGRLFFAG  594 (881)
T ss_pred             hHHhhcCCHHHHHHHHHHHHHHHhCccccccCCceEEEEccCCCCCCCCccccCCCCCCchHHHHHHhCcCCCCcEEEee
Confidence            34567789999999999999999962  2111466777888854322      22344321 111222344  5899999


Q ss_pred             ccccCCCCCccchHHHHHHHHHHHHHHHHhCC
Q 019274          271 DWITTRHGSWSQERSYVTGLEAANRVVDYLGD  302 (343)
Q Consensus       271 d~~~~g~~~~~~ega~~Sg~~aA~~il~~~~~  302 (343)
                      +++...|+ ++|+||+.||++||++|+..+.+
T Consensus       595 EaTs~~~~-GTVhGAieSGlRAA~eIl~~l~~  625 (881)
T PLN03000        595 EATTRRYP-ATMHGAFVTGLREAANMAQSAKA  625 (881)
T ss_pred             hHHhCCCC-eeHHHHHHHHHHHHHHHHHHhhh
Confidence            99987788 79999999999999999999875

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=99.85  E-value=2.8e-20  Score=172.51  Aligned_cols=298  Identities=24%  Similarity=0.288  Sum_probs=228.5

Q ss_pred             CccCCCCHHHHHHhHHHHHHhhhcCCcccccHHHHHHHHHHHHHhcCCCceeEeecCCCchhhhHHHHHHHHHcCCeEEc
Q 019274            1 MIQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLD   80 (343)
Q Consensus         1 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~~~~~~~~~~~~~gG~~~~l~~~l~~~l~~~G~~i~~   80 (343)
                      |++++.+...++..|.|++....+.+++.+|++.++.++..+++.+.++.....++|+..+.+..++.+++++.|.+++.
T Consensus       155 l~~~g~~~~~~k~~~~~~~~~l~f~~~e~~sa~~~lt~~~~~~~~~~~~~i~~~~~g~~~E~~~~p~~~yi~~~G~~v~~  234 (485)
T COG3349         155 LKEKGAREGAYKAAFAPIALALTFIDPEGCSARFFLTILNLFLIVTLEASILRNLRGSPDEVLLQPWTEYIPERGRKVHA  234 (485)
T ss_pred             HHHhCCCchhHHHHHHHHHHhhcccCcccCcchhHHHHHHHHHHhccCcchhhhhcCCCcceeeehhhhhccccCceeec
Confidence            45678899999999999999999999999999999999988766654566666778998999999999999999999999


Q ss_pred             ceeeeEEEecCCC--CeEEEEEECCe---EEecCEEEEeeChhhHHHhhhhhcccCchhHHhhccCcccceEEEEEEecc
Q 019274           81 GRRVTDFIYDEER--CCISDVVCGKE---TYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDK  155 (343)
Q Consensus        81 ~~~V~~I~~~~~~--g~v~~V~~~g~---~~~ad~VV~a~p~~~~~~Ll~~~~~~~~~~~~~~~~l~~~~~~~v~l~~~~  155 (343)
                      ..+|++|..+..+  .+++++.+.+.   ...++.|+.+.........++..+.+ ...++.+..++..++++++++++.
T Consensus       235 ~~pv~~l~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~v~~~~~~~ps~W~~-~~~f~~ly~l~~~p~~~~~l~~~~  313 (485)
T COG3349         235 DYPVKELDLDGARGLAKVTGGDVTGPEQEQQAALAVVDAFAVQRFKRDLPSEWPK-WSNFDGLYGLRLVPVITLHLRFDG  313 (485)
T ss_pred             cceeeeeeccccccccceEeeeecCcceEeeehhhhhcccccchHhhcCcccccc-cccccccccccccceeEEEEeecC
Confidence            9999999887531  45788877653   34567777777777777778877632 344566777778899999999986


Q ss_pred             CCCCCCCc-------ceeecCCCCccceEeeccccccccCCCCC-eEEEEEeeCCCCCCCCCHHHHHHHHHHHHhhhccc
Q 019274          156 KVTVPNVS-------NACSGFGDSLAWTFFDLNKIYDEHKDDSA-TVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKD  227 (343)
Q Consensus       156 ~~~~~~~~-------~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~e~~~~~~~~L~~~~p~  227 (343)
                      ........       +.... +.+....+++....++.|..++. +.+.....++..|...+++++.....+.+...+|.
T Consensus       314 ~~~~~~~~~~~~~~dn~~~s-~~~l~~~~ad~~~~~~~y~e~g~~~~le~~~~~~~~~~~~~~~~~~a~~e~~~~~~vP~  392 (485)
T COG3349         314 WVTELTDRNQQFGIDNLLWS-DDTLGGVVADLALTSPDYVEPGAGCYLEKVLAPGWPFLFESDEAIVATFEKELYELVPS  392 (485)
T ss_pred             ccccccccchhhhhhccccc-cccCCceeeeccccchhhccccchhhhhhhhcccccccccchhhHHHHHHHHhhhcCCc
Confidence            54322211       11111 11223335665555555554443 44433445677778888999999999999999998


Q ss_pred             CCCCceeeeEEEecCCCccccCCCCCCCCCCCCCCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHHHhCC
Q 019274          228 FSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGD  302 (343)
Q Consensus       228 ~~~~~~~~~~~~r~~~~~~~~~~g~~~~~p~~~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~~~~~  302 (343)
                      ..+++ ....+.+.+++.+...||+..+||.+.|+++|++++|||+... +.++||+|..||+.||+.|++.+..
T Consensus       393 ~~~a~-~~~~~i~~~q~~~~~~pgs~~~rP~~~Tpv~N~~laGd~~~~~-~~~smE~A~~sGl~AA~~v~~~~~~  465 (485)
T COG3349         393 LAEAK-LKSSVLVNQQSLYGLAPGSYHYRPEQKTPIPNLLLAGDYTKQP-YLGSMEGATLSGLLAANAILDNLGH  465 (485)
T ss_pred             hhccc-ccccceeccccccccCCCccccCCCCCCCccchhhccceeecC-CcCccchhhhhHHHHHHHHHHhhhh
Confidence            76645 3445666889999999999999999999999999999999754 3479999999999999999987764

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=99.85  E-value=5.4e-20  Score=174.34  Aligned_cols=271  Identities=21%  Similarity=0.182  Sum_probs=163.9

Q ss_pred             hHHHHHHhhhcCCcccccHHHHHHHHHHHHHh----cCCCceeEeecCCCchhhhHHHHHHHHHcCCeEEcceeeeEEEe
Q 019274           14 VIGPLVQVGLFAPAEQCSAAATLGILYFIILA----HQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIY   89 (343)
Q Consensus        14 ~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~~----~~~~~~~~~~~gG~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~   89 (343)
                      ++.++....++..+...++......+......    ...........|+    +...+...++..|++|++|++|++|..
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~----~~~~~~~~~~~~g~~i~l~~~V~~I~~  237 (450)
T PF01593_consen  162 LFRPFFFGAFGFLPDESSAALALLSFPHFDLQDNGGYFPFGGLTVGMGG----LSLALALAAEELGGEIRLNTPVTRIER  237 (450)
T ss_dssp             HHHHHHHHHHHHHHCTTTHHHHHHHHHHCHHHHHHHHTTSSTEEEETTT----THHHHHHHHHHHGGGEESSEEEEEEEE
T ss_pred             HHHhhhhhhhccccchhhhhHHHhhhhhcccccccccccccceeecccc----hhHHHHHHHhhcCceeecCCcceeccc
Confidence            45566666666666666666333333221110    1111122223444    334455556666889999999999999


Q ss_pred             cCCCCeEEEEEE-CCeEEecCEEEEeeChhhHHH-hhhhhcccCchhHHhhccCcccceEEEEEEeccCCCCCCC-ccee
Q 019274           90 DEERCCISDVVC-GKETYSAGAVVLAVGISTLQE-LIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNV-SNAC  166 (343)
Q Consensus        90 ~~~~g~v~~V~~-~g~~~~ad~VV~a~p~~~~~~-Ll~~~~~~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~-~~~~  166 (343)
                      ++  ++|. |.+ +|++++||+||+|+|+..+.+ .+.+. ++ ....+.++++.+.++.++++.++++++.+.. ...+
T Consensus       238 ~~--~~v~-v~~~~g~~~~ad~VI~a~p~~~l~~i~~~p~-l~-~~~~~a~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~  312 (450)
T PF01593_consen  238 ED--GGVT-VTTEDGETIEADAVISAVPPSVLKNILLLPP-LP-EDKRRAIENLPYSSVSKVFLGFDRPFWPPDIDFFGI  312 (450)
T ss_dssp             ES--SEEE-EEETTSSEEEESEEEE-S-HHHHHTSEEEST-SH-HHHHHHHHTEEEEEEEEEEEEESSGGGGSTTTESEE
T ss_pred             cc--cccc-cccccceEEecceeeecCchhhhhhhhhccc-cc-ccccccccccccCcceeEEEeeecccccccccccce
Confidence            98  7765 555 467999999999999999986 22221 21 2345677888899989999999999875431 1111


Q ss_pred             ecCCC-CccceEeeccccccccCCCCCeEEEEEee-C-CCCCCCCCHHHHHHHHHHHHhhhcccCCCCceeeeEEEecCC
Q 019274          167 SGFGD-SLAWTFFDLNKIYDEHKDDSATVIQADFY-H-ANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPK  243 (343)
Q Consensus       167 ~~~~~-~~~~~~~d~~~~~~~~~~~~~~~i~~~~~-~-~~~~~~~~~~e~~~~~~~~L~~~~p~~~~~~~~~~~~~r~~~  243 (343)
                      ...+. .....+.+.+...+.   +++.++...+. . ...+..++++++.+.++++|++++|.....++....+.+|..
T Consensus       313 ~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~L~~~~~~~~~~~~~~~~~~~w~~  389 (450)
T PF01593_consen  313 LYSDGFSPIGYVSDPSKFPGR---PGGGVLTSYVGGPDAPEWDDLSDEEILERVLDDLRKILPGASIPDPIDITVTRWSR  389 (450)
T ss_dssp             EEESSTSSEEEEEEECCTTSC---TTSEEEEEEEEHHHHHHHTTSCHHHHHHHHHHHHHHHHTTGGGGEESEEEEEECTT
T ss_pred             ecccCccccccccccccCccc---ccCCcceeeeeccccchhcccchhhhHHHHHHHhhhcccccccccccccccccccc
Confidence            11121 111112222211111   23444433332 1 235677889999999999999999952111455556677865


Q ss_pred             -CccccC-----CCCC-CCCCCCCCCC-CCeEEeeccccCCCCCccchHHHHHHHHHHHHHH
Q 019274          244 -SLTHFF-----PGSY-KYMMRGFTSF-PNLFMAGDWITTRHGSWSQERSYVTGLEAANRVV  297 (343)
Q Consensus       244 -~~~~~~-----~g~~-~~~p~~~~~~-~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il  297 (343)
                       .++...     ++.. ..++....++ +||||||||+.++++ ++++||+.||++||+.|+
T Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~-~~~~gA~~sG~~aA~~il  450 (450)
T PF01593_consen  390 DPYPRGSYSYFPPGQSSQFRPALRTPIDPGLYFAGDWTSPGYP-GGIEGAILSGRRAAEEIL  450 (450)
T ss_dssp             STTTSSSCECHCTTHHHHHHHHHHSCBTTTEEE-SGGGSSSST-TSHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccCCcceEEEEeecccCCCCC-CcHHHHHHHHHHHHHHhC
Confidence             322222     2221 1234445677 699999999998877 699999999999999986

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>PLN02529 lysine-specific histone demethylase 1

Probab=99.84  E-value=5.4e-19  Score=174.50  Aligned_cols=232  Identities=14%  Similarity=0.156  Sum_probs=153.5

Q ss_pred             eEeecCCCchhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhhHHH--hhhhhcc
Q 019274           52 LVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQE--LIKNSIL  129 (343)
Q Consensus        52 ~~~~~gG~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~~~~--Ll~~~~~  129 (343)
                      ...+.||+ ++|+++|++.     ..|++|++|++|..++  +.| .|++++++++||+||+|+|+..+.+  +.-.+.+
T Consensus       349 ~~~i~GG~-~~Li~aLA~~-----L~IrLnt~V~~I~~~~--dGV-tV~t~~~~~~AD~VIVTVPlgVLk~~~I~F~PpL  419 (738)
T PLN02529        349 HCFLAGGN-WRLINALCEG-----VPIFYGKTVDTIKYGN--DGV-EVIAGSQVFQADMVLCTVPLGVLKKRTIRFEPEL  419 (738)
T ss_pred             eEEECCcH-HHHHHHHHhc-----CCEEcCCceeEEEEcC--CeE-EEEECCEEEEcCEEEECCCHHHHHhccccCCCCC
Confidence            34567995 6799988764     4699999999999987  344 4666677899999999999999974  3222233


Q ss_pred             cCchhHHhhccCcccceEEEEEEeccCCCCCCCcceeecCC----CCc-cceE-eeccccccccCCCCCeEEEEEee--C
Q 019274          130 CNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFG----DSL-AWTF-FDLNKIYDEHKDDSATVIQADFY--H  201 (343)
Q Consensus       130 ~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~----~~~-~~~~-~d~~~~~~~~~~~~~~~i~~~~~--~  201 (343)
                      | ....++++++.+.++.++++.|++++|.....  .++..    ... .+.. ++.+.      .+++.++.+...  .
T Consensus       420 P-~~K~~AI~rL~yG~v~KV~L~F~~~FW~~~~~--~fG~l~~~~~~~g~~~~~~~~~~------~~ggpvLvafv~G~~  490 (738)
T PLN02529        420 P-RRKLAAIDRLGFGLLNKVAMVFPSVFWGEELD--TFGCLNESSNKRGEFFLFYGYHT------VSGGPALVALVAGEA  490 (738)
T ss_pred             C-HHHHHHHHcCCCceeEEEEEEeCCccccCCCC--ceEEEeccCCCCceEEEEecCCC------CCCCCEEEEEECchh
Confidence            2 44568889999999999999999998843211  22211    011 1111 22111      023334333222  2


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhhhccc--CCCCceeeeEEEecCCCccc------cCCCCCC-CCCCCCCC-CCCeEEeec
Q 019274          202 ANELMPLKDDQVVAKAVSYLSKCIKD--FSTATVMDHKIRRFPKSLTH------FFPGSYK-YMMRGFTS-FPNLFMAGD  271 (343)
Q Consensus       202 ~~~~~~~~~~e~~~~~~~~L~~~~p~--~~~~~~~~~~~~r~~~~~~~------~~~g~~~-~~p~~~~~-~~~L~laGd  271 (343)
                      +..+..++++++.+.+++.|+++|+.  .....++...+++|....+.      ..|+... .......+ .++|||||+
T Consensus       491 A~~le~lsdeeii~~vl~~L~~ifgp~~~~vp~Pi~~v~t~W~~DP~s~GsYS~~~~g~~~~d~~~La~pv~grL~FAGE  570 (738)
T PLN02529        491 AQRFENTDPSTLLHRVLSVLRGIYNPKGINVPDPIQTICTRWGSDPLSYGSYSHVRVQSSGSDYDILAESVSGRLFFAGE  570 (738)
T ss_pred             hHHHhcCCHHHHHHHHHHHHHHHhCccccccCCceEEEEccCCcCCCCCCCcccCCCCCchhHHHHHhCCCCCCEEEEEH
Confidence            34466788999999999999999962  21114556667788543221      1222211 01111233 478999999


Q ss_pred             cccCCCCCccchHHHHHHHHHHHHHHHHhCC
Q 019274          272 WITTRHGSWSQERSYVTGLEAANRVVDYLGD  302 (343)
Q Consensus       272 ~~~~g~~~~~~ega~~Sg~~aA~~il~~~~~  302 (343)
                      ++..+|+ ++|+||+.||.+||++|++.+..
T Consensus       571 aTs~~~p-gtVeGAi~SG~RAA~eIl~~l~~  600 (738)
T PLN02529        571 ATTRQYP-ATMHGAFLSGLREASRILHVARS  600 (738)
T ss_pred             HHhCCCC-eEeHHHHHHHHHHHHHHHHHHhh
Confidence            9998888 79999999999999999988764

>PLN02676 polyamine oxidase

Probab=99.82  E-value=2.1e-19  Score=172.44  Aligned_cols=236  Identities=12%  Similarity=0.154  Sum_probs=156.6

Q ss_pred             cCCCchhhhHHHHHHHHHc------CCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhHHH--hhhh
Q 019274           56 RGTLREKIFEPWMDSMRTR------GCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQE--LIKN  126 (343)
Q Consensus        56 ~gG~~~~l~~~l~~~l~~~------G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~~~--Ll~~  126 (343)
                      +|| ++.|+++|++.+.+.      +.+|++|++|++|..++  +.| .|++. |++++||+||+|+|+..+.+  +...
T Consensus       220 ~~G-~~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~~--~gV-~V~~~~G~~~~a~~VIvtvPl~vLk~~~I~F~  295 (487)
T PLN02676        220 PRG-YESLVYYLAEQFLSTKSGKITDPRLKLNKVVREISYSK--NGV-TVKTEDGSVYRAKYVIVSVSLGVLQSDLIKFK  295 (487)
T ss_pred             CCC-HHHHHHHHHhhcccccccccCCCceecCCEeeEEEEcC--CcE-EEEECCCCEEEeCEEEEccChHHhccCceEEe
Confidence            578 577999999876443      35799999999999887  344 57776 56899999999999999975  4333


Q ss_pred             hcccCchhHHhhccCcccceEEEEEEeccCCCCCCCcceeecCCCC-cc-ceEeeccccccccCCCCCeEEEEEeeC--C
Q 019274          127 SILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDS-LA-WTFFDLNKIYDEHKDDSATVIQADFYH--A  202 (343)
Q Consensus       127 ~~~~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~-~~-~~~~d~~~~~~~~~~~~~~~i~~~~~~--~  202 (343)
                      +.+| ....+.++++.+....++.+.|++++|...+...++..... .. ..++..  .....  ++..++.+.+..  +
T Consensus       296 P~LP-~~k~~ai~~l~~g~~~Kv~l~f~~~FW~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~l~~~~~g~~a  370 (487)
T PLN02676        296 PPLP-DWKIEAIYQFDMAVYTKIFLKFPYKFWPSGPGTEFFLYAHERRGYYPFWQH--LENEY--PGSNVLFVTVTDEES  370 (487)
T ss_pred             CCCC-HHHHHHHHhCCceeeEEEEEEeCCCCCCCCCCceeeeeeccccccchhhhh--cccCC--CCCCEEEEEechHHH
Confidence            3443 34557788889999999999999999854221111111100 00 000100  00001  233444333322  2


Q ss_pred             CCCCCCCHHHHHHHHHHHHhhhcccCCCCceeeeEEEecCCC------ccccCCCCCC-CCCCCCCCCCCeEEeeccccC
Q 019274          203 NELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKS------LTHFFPGSYK-YMMRGFTSFPNLFMAGDWITT  275 (343)
Q Consensus       203 ~~~~~~~~~e~~~~~~~~L~~~~p~~~~~~~~~~~~~r~~~~------~~~~~~g~~~-~~p~~~~~~~~L~laGd~~~~  275 (343)
                      ..+..++++++.+.+++.|+++||.... .++.....+|...      +..+.||... ..+....|+++|||||+.+..
T Consensus       371 ~~~~~~s~e~~~~~vl~~L~~~~g~~~~-~p~~~~~~~W~~dp~s~Gsys~~~pG~~~~~~~~L~~P~gri~FAGe~ts~  449 (487)
T PLN02676        371 RRIEQQPDSETKAEIMEVLRKMFGPNIP-EATDILVPRWWSNRFFKGSYSNWPIGVSRYEFDQIRAPVGRVYFTGEHTSE  449 (487)
T ss_pred             HHHHhCCHHHHHHHHHHHHHHHhCCCCC-CcceEEecccCCCCCCCcccCCCCCCCChhHHHHHhCCCCceEEecccccc
Confidence            3456688999999999999999973222 4556566677432      2223345432 122334578899999999987


Q ss_pred             CCCCccchHHHHHHHHHHHHHHHHhCC
Q 019274          276 RHGSWSQERSYVTGLEAANRVVDYLGD  302 (343)
Q Consensus       276 g~~~~~~ega~~Sg~~aA~~il~~~~~  302 (343)
                      .++ ++|+||+.||++||++|++.+..
T Consensus       450 ~~~-g~~eGA~~SG~RaA~~I~~~l~~  475 (487)
T PLN02676        450 KYN-GYVHGAYLAGIDTANDLLECIKK  475 (487)
T ss_pred             ccc-cchHHHHHHHHHHHHHHHHHhcc
Confidence            777 79999999999999999987753

>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]

Probab=99.82  E-value=3.4e-18  Score=154.21  Aligned_cols=241  Identities=15%  Similarity=0.114  Sum_probs=153.5

Q ss_pred             CceeEeecCCCchhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhHH-Hhhhh
Q 019274           49 NFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQ-ELIKN  126 (343)
Q Consensus        49 ~~~~~~~~gG~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~~-~Ll~~  126 (343)
                      ...+.||+||++ .+++++++.++++|++|.+++.|++|..++  |+++||++. |.++.+..||+++.++.+. +|++.
T Consensus       253 ~g~~~Yp~GG~G-avs~aia~~~~~~GaeI~tka~Vq~Illd~--gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~kLlp~  329 (561)
T KOG4254|consen  253 KGGWGYPRGGMG-AVSFAIAEGAKRAGAEIFTKATVQSILLDS--GKAVGVRLADGTEVRSKIVVSNATPWDTFEKLLPG  329 (561)
T ss_pred             CCcccCCCCChh-HHHHHHHHHHHhccceeeehhhhhheeccC--CeEEEEEecCCcEEEeeeeecCCchHHHHHHhCCC
Confidence            345679999975 699999999999999999999999999998  999999997 6788999999999999876 89999


Q ss_pred             hcccCchhHHhhccCccc-ceEE----EEEEeccCCCCCCCccee---ecCC-------------C----CccceEee-c
Q 019274          127 SILCNREEFLKVLNLASI-DVVS----VKLWFDKKVTVPNVSNAC---SGFG-------------D----SLAWTFFD-L  180 (343)
Q Consensus       127 ~~~~~~~~~~~~~~l~~~-~~~~----v~l~~~~~~~~~~~~~~~---~~~~-------------~----~~~~~~~d-~  180 (343)
                      ..++ .+ + .++++.+. ++.+    ..+..+..-..+.|+...   +..+             .    .....++. .
T Consensus       330 e~LP-ee-f-~i~q~d~~spv~k~~~psFl~~~~~~~~plph~~~~i~~~~ed~~~~H~~v~D~~~gl~s~~pvI~~siP  406 (561)
T KOG4254|consen  330 EALP-EE-F-VIQQLDTVSPVTKDKLPSFLCLPNTKSLPLPHHGYTIHYNAEDTQAHHRAVEDPRNGLASHRPVIELSIP  406 (561)
T ss_pred             ccCC-ch-h-hhhhcccccccccccCcceeecCCCCCCCCCccceeEEecCchHHHHHHHHhChhhcccccCCeEEEecc
Confidence            8774 23 2 44555443 2221    223322221212221111   1100             0    00111122 1


Q ss_pred             cccccccCCCCCeEEEEE-eeCCCCCCCC-------CHHHHHHHHHHHHhhhcccCCCCceeeeEEEecCCCcccc----
Q 019274          181 NKIYDEHKDDSATVIQAD-FYHANELMPL-------KDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHF----  248 (343)
Q Consensus       181 ~~~~~~~~~~~~~~i~~~-~~~~~~~~~~-------~~~e~~~~~~~~L~~~~p~~~~~~~~~~~~~r~~~~~~~~----  248 (343)
                      +.+.+.+.+++++++.+. .|....|...       .+++..+++++.+++++|++++ .++...+- +|....++    
T Consensus       407 S~lDptlappg~Hvl~lf~~~t~~~w~g~~~~eye~~K~~~ae~~~~~ie~l~Pgfss-sv~~~dvg-TP~t~qr~l~~~  484 (561)
T KOG4254|consen  407 SSLDPTLAPPGKHVLHLFTQYTPEEWEGGLKGEYETKKEAFAERVFSVIEKLAPGFSS-SVESYDVG-TPPTHQRFLGRP  484 (561)
T ss_pred             cccCCCcCCCCceEEEEeccCCccccccCCcccchHHHHHHHHHHHHHHHHHcCCccc-eEEEEecC-CCchhhHHhcCC
Confidence            334456776787876443 2322334322       3577899999999999999987 56554433 33322211    


Q ss_pred             ----CC---CCC---CCCCCC-----CCCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHHHhCC
Q 019274          249 ----FP---GSY---KYMMRG-----FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGD  302 (343)
Q Consensus       249 ----~~---g~~---~~~p~~-----~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~~~~~  302 (343)
                          .+   +..   -.+|-.     .+|++|||+||+.+++|.   ++.++.  |+++|...+.+...
T Consensus       485 ~Gn~~~~~~~ld~g~l~~Pv~~~s~y~tPI~~LYlcGs~afPGg---GV~a~a--G~~~A~~a~~~~~~  548 (561)
T KOG4254|consen  485 GGNIFHGAMGLDQGYLHRPVMAWSNYSTPIPGLYLCGSGAFPGG---GVMAAA--GRLAAHSAILDRKL  548 (561)
T ss_pred             CCcccCcccccccccccCCccccccCCCCCCceEEecCCCCCCC---Cccccc--hhHHHHHHhhhhhh
Confidence                11   111   124544     689999999999988764   444443  88888888776553

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=99.81  E-value=4.2e-18  Score=168.98  Aligned_cols=258  Identities=14%  Similarity=0.146  Sum_probs=166.7

Q ss_pred             eEeecCCCchhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhhHHH--hhhhhcc
Q 019274           52 LVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQE--LIKNSIL  129 (343)
Q Consensus        52 ~~~~~gG~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~~~~--Ll~~~~~  129 (343)
                      .....||+ +.|+++|++.+     .|++|++|++|...++ | | .|..+|++++||+||+|+|+..+.+  +.-.+.+
T Consensus       429 ~~~v~GG~-~~Li~aLa~~L-----~I~ln~~V~~I~~~~d-g-V-~V~~~G~~~~AD~VIvTvPl~vLk~~~I~F~P~L  499 (808)
T PLN02328        429 HCFIPGGN-DTFVRELAKDL-----PIFYERTVESIRYGVD-G-V-IVYAGGQEFHGDMVLCTVPLGVLKKGSIEFYPEL  499 (808)
T ss_pred             EEEECCcH-HHHHHHHHhhC-----CcccCCeeEEEEEcCC-e-E-EEEeCCeEEEcCEEEECCCHHHHhhcccccCCCC
Confidence            44567995 67999998876     3999999999999873 3 3 4555678899999999999999874  2222223


Q ss_pred             cCchhHHhhccCcccceEEEEEEeccCCCCCCCcceeecCC---CC-cc-ce-EeeccccccccCCCCCeEEEEEee--C
Q 019274          130 CNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFG---DS-LA-WT-FFDLNKIYDEHKDDSATVIQADFY--H  201 (343)
Q Consensus       130 ~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~---~~-~~-~~-~~d~~~~~~~~~~~~~~~i~~~~~--~  201 (343)
                      + ....++++++.+.++.++.+.|++++|.... . .+|+.   .. .+ +. +++.+..      .++.++.....  .
T Consensus       500 P-~~K~~AI~~l~yG~~~KV~L~F~~~FW~~~~-d-~fG~l~~d~s~rG~~~lf~s~s~~------~G~~vLvafv~G~~  570 (808)
T PLN02328        500 P-QRKKDAIQRLGYGLLNKVALLFPYNFWGGEI-D-TFGHLTEDPSMRGEFFLFYSYSSV------SGGPLLIALVAGDA  570 (808)
T ss_pred             C-HHHHHHHHcCCCcceEEEEEEeCCccccCCC-C-ceEEEeecCCCCceEEEEecCCCC------CCCcEEEEEecChh
Confidence            2 3456788999999999999999999884321 1 12211   10 11 11 1221110      23444433222  2


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhhhccc--CCCCceeeeEEEecCCCcccc------CCCCCC-CCCCCCCC--CCCeEEee
Q 019274          202 ANELMPLKDDQVVAKAVSYLSKCIKD--FSTATVMDHKIRRFPKSLTHF------FPGSYK-YMMRGFTS--FPNLFMAG  270 (343)
Q Consensus       202 ~~~~~~~~~~e~~~~~~~~L~~~~p~--~~~~~~~~~~~~r~~~~~~~~------~~g~~~-~~p~~~~~--~~~L~laG  270 (343)
                      +..+..++++++++.+++.|+++|+.  .....++...+++|....+.+      .+|... ..+....+  .++|||||
T Consensus       571 A~~~e~lsdeE~v~~vL~~Lr~ifgp~~~~vp~P~~~~vtrW~~DP~s~GSYS~~~pG~~~~~~~~LaePv~~GRL~FAG  650 (808)
T PLN02328        571 AVKFETLSPVESVKRVLQILRGIFHPKGIVVPDPVQAVCTRWGKDCFTYGSYSYVAVGSSGDDYDILAESVGDGRVFFAG  650 (808)
T ss_pred             hHHHhcCCHHHHHHHHHHHHHHHhCcccccccCcceEEEecCCCCCCcCCCCCCCCCCCchhHHHHHhccCCCCCEEEEE
Confidence            33456778999999999999999963  111146677788896543322      233321 11112234  35899999


Q ss_pred             ccccCCCCCccchHHHHHHHHHHHHHHHHhCCCCcc--cccccCCCchhhhHHHHHHHHHHhhhc
Q 019274          271 DWITTRHGSWSQERSYVTGLEAANRVVDYLGDGSFS--KIIPVEEDEPHIEALRTVNRRFNEIRA  333 (343)
Q Consensus       271 d~~~~g~~~~~~ega~~Sg~~aA~~il~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (343)
                      +++...++ ++|+||+.||.++|++|++.+.....+  +-....+  +   .--++.+-|++++-
T Consensus       651 EaTs~~~~-GtVhGAi~SGlRAA~eIl~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~  709 (808)
T PLN02328        651 EATNKQYP-ATMHGAFLSGMREAANILRVARRRSLCIDDKVNNDE--E---EDDCLDQLFDTPDL  709 (808)
T ss_pred             hhHhCCCC-eEhHHHHHHHHHHHHHHHHHHhhcccCCcccccccc--h---hhhHHHHHhcCcCc
Confidence            99987777 799999999999999999987753322  2222222  1   22336788888764

>PLN02568 polyamine oxidase

Probab=99.81  E-value=1.2e-18  Score=168.66  Aligned_cols=281  Identities=15%  Similarity=0.087  Sum_probs=176.5

Q ss_pred             HHhHHHHHHhhhcCCcccccHHHHHHHHHHHHHh--------cC-----C-----CceeEeecCCCchhhhHHHHHHHHH
Q 019274           12 RNVIGPLVQVGLFAPAEQCSAAATLGILYFIILA--------HQ-----K-----NFDLVWCRGTLREKIFEPWMDSMRT   73 (343)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~~--------~~-----~-----~~~~~~~~gG~~~~l~~~l~~~l~~   73 (343)
                      +.+.+|+..++++..+++.+...++..+..+.-.        ..     .     ......++|| ++.|+++|++.+. 
T Consensus       176 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ls~ls~~~~~~~~~~~g~~~~i~gG-~~~Li~~La~~L~-  253 (539)
T PLN02568        176 DSVSADEQIKGYGGWSRKLLEEAIFTMHENTQRTYTSADDLSTLDLAAESEYRMFPGEEITIAKG-YLSVIEALASVLP-  253 (539)
T ss_pred             hhcccchhhccccchhHHHHHHHHHHHHHHhhccccccccHhhccccccCcceecCCCeEEECCc-HHHHHHHHHhhCC-
Confidence            3445677788888888888777666655443100        00     0     0123346788 4679999999884 


Q ss_pred             cCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhHHH------hhhhhcccCchhHHhhccCcccce
Q 019274           74 RGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQE------LIKNSILCNREEFLKVLNLASIDV  146 (343)
Q Consensus        74 ~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~~~------Ll~~~~~~~~~~~~~~~~l~~~~~  146 (343)
                       +.+|++|++|++|..++  +.| .|++. |++++||+||+|+|+..+.+      +.-.+.+| ....++++++.+..+
T Consensus       254 -~~~I~ln~~V~~I~~~~--~~v-~V~~~dG~~~~aD~VIvTvPl~vL~~~~~~~~i~F~P~LP-~~k~~Ai~~l~~g~~  328 (539)
T PLN02568        254 -PGTIQLGRKVTRIEWQD--EPV-KLHFADGSTMTADHVIVTVSLGVLKAGIGEDSGLFSPPLP-DFKTDAISRLGFGVV  328 (539)
T ss_pred             -CCEEEeCCeEEEEEEeC--CeE-EEEEcCCCEEEcCEEEEcCCHHHHhhccccccceecCCCC-HHHHHHHHhcCCcee
Confidence             46899999999999887  444 46665 66899999999999999985      22222332 345678899999999


Q ss_pred             EEEEEEeccCCCCCCC------cceeecCC-CC------ccceEeeccccccccCCCCCeEEEEEeeC--CCCCCCCCHH
Q 019274          147 VSVKLWFDKKVTVPNV------SNACSGFG-DS------LAWTFFDLNKIYDEHKDDSATVIQADFYH--ANELMPLKDD  211 (343)
Q Consensus       147 ~~v~l~~~~~~~~~~~------~~~~~~~~-~~------~~~~~~d~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~  211 (343)
                      .++++.|++++|+...      ...++..+ ..      ..+.+-......+ .. .+..++..+...  +..+..++++
T Consensus       329 ~Ki~l~f~~~fW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~vL~~~~~G~~A~~~e~l~~~  406 (539)
T PLN02568        329 NKLFVELSPRPDGSPEDVAKFPFLQMAFHRSDSEARHDKIPWWMRRTASICP-IH-KNSSVLLSWFAGKEALELEKLSDE  406 (539)
T ss_pred             eEEEEEecCCCCCcccccccccceeeeecccchhhhcccccchhhccccccc-cC-CCCCEEEEEeccHHHHHHHcCCHH
Confidence            9999999999874210      00011000 00      0000000000001 00 133455443332  3456678999


Q ss_pred             HHHHHHHHHHhhhcccCC---------------------CCceeeeEEEecCCC------ccccCCCCCC-CCCCCCCCC
Q 019274          212 QVVAKAVSYLSKCIKDFS---------------------TATVMDHKIRRFPKS------LTHFFPGSYK-YMMRGFTSF  263 (343)
Q Consensus       212 e~~~~~~~~L~~~~p~~~---------------------~~~~~~~~~~r~~~~------~~~~~~g~~~-~~p~~~~~~  263 (343)
                      ++.+.+++.|.++|+...                     ..+++...+++|...      +....||... .+.....|+
T Consensus       407 ~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~t~W~~dp~~~GsYs~~~~g~~~~~~~~La~P~  486 (539)
T PLN02568        407 EIIRGVQTTLSSFLKRRVAGLGSQSHPLCNGGASSNDGSRWKFVKVLKSKWGTDPLFLGSYSYVAVGSSGDDLDRMAEPL  486 (539)
T ss_pred             HHHHHHHHHHHHHcCCcccCcccccccccccccccccccCCCCceEEeCCCCCCCccCCccCCCcCCCChhHHHHHhCcc
Confidence            999999999999997321                     014556666778432      1112244322 111111233


Q ss_pred             -------------CCeEEeeccccCCCCCccchHHHHHHHHHHHHHHHHhCC
Q 019274          264 -------------PNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGD  302 (343)
Q Consensus       264 -------------~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~~~~~  302 (343)
                                   ++|||||..|+..|+ ++|+||+.||+++|++|++..++
T Consensus       487 ~~~~~~~~~~~~~~~l~FAGEat~~~~~-~Tv~GA~~SG~RaA~~i~~~~~~  537 (539)
T PLN02568        487 PRISDHDQAGGPPLQLLFAGEATHRTHY-STTHGAYFSGLREANRLLQHYKC  537 (539)
T ss_pred             ccccccccccCCCccEEEeecccCCCcc-chHHHHHHHHHHHHHHHHHHhcc
Confidence                         369999999998888 79999999999999999987654

>PLN02976 amine oxidase

Probab=99.81  E-value=2.4e-18  Score=175.42  Aligned_cols=234  Identities=18%  Similarity=0.183  Sum_probs=156.4

Q ss_pred             EeecCCCchhhhHHHHHHHHHcCCeEEcceeeeEEEecC--------CCCeEEEEEEC-CeEEecCEEEEeeChhhHH--
Q 019274           53 VWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDE--------ERCCISDVVCG-KETYSAGAVVLAVGISTLQ--  121 (343)
Q Consensus        53 ~~~~gG~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~--------~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~~--  121 (343)
                      ..++|| ++.|+++|++.+     .|++|++|++|.+.+        +++.| .|.+. |++++||+||+|+|+..+.  
T Consensus       929 ~rIkGG-YqqLIeALAe~L-----~IrLNtpVtrId~s~~d~~~~~s~~dGV-tVtTsDGetftADaVIVTVPLGVLKag 1001 (1713)
T PLN02976        929 CMIKGG-YSNVVESLAEGL-----DIHLNHVVTDVSYGSKDAGASGSSRKKV-KVSTSNGSEFLGDAVLITVPLGCLKAE 1001 (1713)
T ss_pred             EEeCCC-HHHHHHHHHhhC-----CeecCCeEEEEEecCCcccccccCCCcE-EEEECCCCEEEeceEEEeCCHHHhhhc
Confidence            346799 477999998765     499999999999842        00233 46665 6689999999999999987  


Q ss_pred             HhhhhhcccCchhHHhhccCcccceEEEEEEeccCCCCCCCcceeecCCC----Ccc--ceEeeccccccccCCCCCeEE
Q 019274          122 ELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGD----SLA--WTFFDLNKIYDEHKDDSATVI  195 (343)
Q Consensus       122 ~Ll~~~~~~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~----~~~--~~~~d~~~~~~~~~~~~~~~i  195 (343)
                      .+.-.+.|| .....++.++.+....++++.|++++|....  .++|...    ..+  +.+++...      ..+..++
T Consensus      1002 ~I~FsPPLP-e~KqaAIqrLgfG~lnKV~LeFdrpFW~~d~--d~FG~s~edtdlrG~~~~~wnlr~------psG~pVL 1072 (1713)
T PLN02976       1002 TIKFSPPLP-DWKYSSIQRLGFGVLNKVVLEFPEVFWDDSV--DYFGATAEETDLRGQCFMFWNVKK------TVGAPVL 1072 (1713)
T ss_pred             ccccCCccc-HHHHHHHHhhccccceEEEEEeCCccccCCC--CccccccccCCCCceEEEeccCCC------CCCCCEE
Confidence            233333443 3445778889999999999999999885321  1333211    011  11122111      0133444


Q ss_pred             EEEee--CCCCCCCCCHHHHHHHHHHHHhhhcccCCCCceeeeEEEecCCCcc------ccCCCCCC-CCCCCCCCCCC-
Q 019274          196 QADFY--HANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLT------HFFPGSYK-YMMRGFTSFPN-  265 (343)
Q Consensus       196 ~~~~~--~~~~~~~~~~~e~~~~~~~~L~~~~p~~~~~~~~~~~~~r~~~~~~------~~~~g~~~-~~p~~~~~~~~-  265 (343)
                      ...+.  .+..+..++++++.+.+++.|.++||+.....++...+++|...-+      ...||... .+.....|+.| 
T Consensus      1073 Vafv~G~aAreiEsLSDEE~Ve~ALe~LrKlFG~~~iPdPv~~vvTrWssDPySrGSYSy~~PGs~~~d~d~LAePVggR 1152 (1713)
T PLN02976       1073 IALVVGKAAIDGQSMSSSDHVNHALMVLRKLFGEALVPDPVASVVTDWGRDPFSYGAYSYVAIGASGEDYDILGRPVENC 1152 (1713)
T ss_pred             EEEeccHhHHHHhhCCHHHHHHHHHHHHHHHcCcccccCcceeEEecCCCCCCcCccccCCCCCCCchHHHHHhCCCCCc
Confidence            33332  2334567889999999999999999853212566777888854322      11244322 11222346666 


Q ss_pred             eEEeeccccCCCCCccchHHHHHHHHHHHHHHHHhCCC
Q 019274          266 LFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGDG  303 (343)
Q Consensus       266 L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~~~~~~  303 (343)
                      |||||+.+...|+ ++|+||+.||.+||++|+..+..|
T Consensus      1153 LFFAGEATS~~~p-GTVHGAIeSG~RAA~eIL~~L~~G 1189 (1713)
T PLN02976       1153 LFFAGEATCKEHP-DTVGGAMMSGLREAVRIIDILNTG 1189 (1713)
T ss_pred             EEEEehhhhCCCc-chHHHHHHHHHHHHHHHHHHHHcc
Confidence            9999999988888 799999999999999999998764

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=99.77  E-value=5.7e-17  Score=147.98  Aligned_cols=233  Identities=15%  Similarity=0.109  Sum_probs=159.1

Q ss_pred             eecCCCchhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECC-eEEecCEEEEeeChhhHHHhhhhhcccCc
Q 019274           54 WCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGK-ETYSAGAVVLAVGISTLQELIKNSILCNR  132 (343)
Q Consensus        54 ~~~gG~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g-~~~~ad~VV~a~p~~~~~~Ll~~~~~~~~  132 (343)
                      .+.||| +.|.+++++.+   |..|+++++|.+|.++++  .| .|+++. +++++|.||||+|+.++.+|--++.+ +.
T Consensus       203 ~~~GGm-d~la~Afa~ql---~~~I~~~~~V~rI~q~~~--gV-~Vt~~~~~~~~ad~~i~tiPl~~l~qI~f~P~l-~~  274 (450)
T COG1231         203 QRLGGM-DQLAEAFAKQL---GTRILLNEPVRRIDQDGD--GV-TVTADDVGQYVADYVLVTIPLAILGQIDFAPLL-PA  274 (450)
T ss_pred             ccCccH-HHHHHHHHHHh---hceEEecCceeeEEEcCC--eE-EEEeCCcceEEecEEEEecCHHHHhhcccCCCC-CH
Confidence            344895 77999998777   679999999999999884  44 477776 89999999999999999877544433 24


Q ss_pred             hhHHhhccCcccceEEEEEEeccCCCCCCC-cceeecCCCCccceEeeccccccccCCCCCeEEEEEee---CCCCCCCC
Q 019274          133 EEFLKVLNLASIDVVSVKLWFDKKVTVPNV-SNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFY---HANELMPL  208 (343)
Q Consensus       133 ~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~~~~---~~~~~~~~  208 (343)
                      .+.+++..+.|.+..++.+.|++++|.+.. .+...-.+... +.+...++.   +. .+..++.-.+.   .+..|..+
T Consensus       275 ~~~~a~~~~~y~~~~K~~v~f~rpFWee~~~l~G~~~tD~~~-~~i~~~s~~---~~-~G~gVl~g~~~~g~~A~~~~~~  349 (450)
T COG1231         275 EYKQAAKGVPYGSATKIGVAFSRPFWEEAGILGGESLTDLGL-GFISYPSAP---FA-DGPGVLLGSYAFGDDALVIDAL  349 (450)
T ss_pred             HHHHHhcCcCcchheeeeeecCchhhhhcccCCceEeecCCc-ceEecCccc---cC-CCceEEEeeeeccccceeEecC
Confidence            556777888999999999999999996543 11111012121 111111211   11 34455433222   34457789


Q ss_pred             CHHHHHHHHHHHHhhhcccCCCCceeeeEEEecCCC------ccccCCCCCC-CCCCCCCCCCCeEEeeccccCCCCCcc
Q 019274          209 KDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKS------LTHFFPGSYK-YMMRGFTSFPNLFMAGDWITTRHGSWS  281 (343)
Q Consensus       209 ~~~e~~~~~~~~L~~~~p~~~~~~~~~~~~~r~~~~------~~~~~~g~~~-~~p~~~~~~~~L~laGd~~~~g~~~~~  281 (343)
                      ++++..+.++..+.++||+............+|...      +..+.||... +-|....+.++++|||..+.+-++ +.
T Consensus       350 ~~~~r~~~vl~~l~~~~g~~a~~~f~~~~~~~W~~dpwt~G~~aa~~~g~~~~~~~~l~~p~gRIh~AgtEhas~~~-Gw  428 (450)
T COG1231         350 PEAERRQKVLARLAKLFGDEAADPFDYGASVDWSKDPWTLGGTAAYPPGQRTKLYPTLPAPHGRIHFAGTEHASEFG-GW  428 (450)
T ss_pred             CHHHHHHHHHHhHhhhCChhhccccccceeeecccCCcCCccccccCCcccccccccccCCCCceEEeeeccccccc-ch
Confidence            999999999999999999643323333356667443      2233445432 233344578899999944445777 79


Q ss_pred             chHHHHHHHHHHHHHHHHh
Q 019274          282 QERSYVTGLEAANRVVDYL  300 (343)
Q Consensus       282 ~ega~~Sg~~aA~~il~~~  300 (343)
                      ++||+.||++||.+|.+.+
T Consensus       429 ~eGAi~Sg~~AA~ei~~~l  447 (450)
T COG1231         429 LEGAIRSGQRAAAEIHALL  447 (450)
T ss_pred             hHHHHHHHHHHHHHHHHhh
Confidence            9999999999999998764

>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]

Probab=99.75  E-value=1.5e-17  Score=149.52  Aligned_cols=280  Identities=13%  Similarity=0.136  Sum_probs=192.6

Q ss_pred             ccCCCCHHHHHHhHHHHHHhhhcCCcccccHHHHHHHHHHHHH--------------hcC---------------CCcee
Q 019274            2 IQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIIL--------------AHQ---------------KNFDL   52 (343)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~--------------~~~---------------~~~~~   52 (343)
                      -+++||+++.+++++|||.++|++|++++|+...+..++....              ...               ....+
T Consensus       162 ~~RrfG~eV~d~~isp~i~GiyAgD~~~LSmk~~F~~l~~~Eqk~Gsi~~G~i~~~~~~~~~k~~e~~~~~~~~~e~~~~  241 (491)
T KOG1276|consen  162 ARRRFGKEVADRLISPFIRGIYAGDPSELSMKSSFGKLWKVEQKHGSIILGTIRAKFARKRTKKAETALSAQAKKEKWTM  241 (491)
T ss_pred             HHHhhhHHHHHHHHHHHhCccccCChHHhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhcCCCccchhhhhhcccccch
Confidence            4789999999999999999999999999999988877655310              000               01112


Q ss_pred             EeecCCCchhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC---C-eEEecCEEEEeeChhhHHHhhhhhc
Q 019274           53 VWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG---K-ETYSAGAVVLAVGISTLQELIKNSI  128 (343)
Q Consensus        53 ~~~~gG~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~---g-~~~~ad~VV~a~p~~~~~~Ll~~~~  128 (343)
                      ...+||+ +.+.+++.+.|.+..+.|.++-+++.+..... |+ |.+.+.   + .....++++.++|+..+.+|++...
T Consensus       242 ~sl~gGl-e~lP~a~~~~L~~~~v~i~~~~~~~~~sk~~~-~~-~~~tl~~~~~~~~~~~~~~~~t~~~~k~a~ll~~~~  318 (491)
T KOG1276|consen  242 FSLKGGL-ETLPKALRKSLGEREVSISLGLKLSGNSKSRS-GN-WSLTLVDHSGTQRVVVSYDAATLPAVKLAKLLRGLQ  318 (491)
T ss_pred             hhhhhhH-hHhHHHHHHHhcccchhhhccccccccccccc-CC-ceeEeEcCCCceeeeccccccccchHHhhhhccccc
Confidence            2357896 78999999999999999999999999876553 44 445443   3 2445667777999999999988753


Q ss_pred             ccCchhHHhhccCcccceEEEEEEeccC-CCC-CCCcceeecCCC-----CccceEeeccccccccCCCCCeEEEEEee-
Q 019274          129 LCNREEFLKVLNLASIDVVSVKLWFDKK-VTV-PNVSNACSGFGD-----SLAWTFFDLNKIYDEHKDDSATVIQADFY-  200 (343)
Q Consensus       129 ~~~~~~~~~~~~l~~~~~~~v~l~~~~~-~~~-~~~~~~~~~~~~-----~~~~~~~d~~~~~~~~~~~~~~~i~~~~~-  200 (343)
                         +.....+..+.|.++..|++.|..+ ... ...++.+.....     ..+ .+||... .+.-. +.. .+.+..+ 
T Consensus       319 ---~sls~~L~ei~y~~V~vVn~~yp~~~~~~pl~GFG~LvPs~~~~~~~~LG-~ifdS~~-Fp~~~-~s~-~vtvm~gg  391 (491)
T KOG1276|consen  319 ---NSLSNALSEIPYVPVAVVNTYYPKEKIDLPLQGFGLLVPSEPKNGFKTLG-TIFDSML-FPDRS-PSP-KVTVMMGG  391 (491)
T ss_pred             ---hhhhhhhhcCCCCceEEEEEeccCcccccccccceeeccCCCCCCCceeE-EEeeccc-CCCCC-CCc-eEEEEecc
Confidence               2334667888999999999999874 221 123455544211     112 2677333 23222 111 3323222 


Q ss_pred             ---CCCCCCCCCHHHHHHHHHHHHhhhcccCCCCceeeeEEEecCCCccccCCCCCCCCCCCC---C--CCCCeEEeecc
Q 019274          201 ---HANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGF---T--SFPNLFMAGDW  272 (343)
Q Consensus       201 ---~~~~~~~~~~~e~~~~~~~~L~~~~p~~~~~~~~~~~~~r~~~~~~~~~~g~~~~~p~~~---~--~~~~L~laGd~  272 (343)
                         ........+.+++++.+.++|.+++.--.  ++....++-|++++|+|+.|++......+   +  +..+|+++|.|
T Consensus       392 ~~~~n~~~~~~S~ee~~~~v~~alq~~Lgi~~--~P~~~~v~l~~~ciPqy~vGh~~~le~a~~~l~~~~g~~l~l~G~~  469 (491)
T KOG1276|consen  392 GGSTNTSLAVPSPEELVNAVTSALQKMLGISN--KPVSVNVHLWKNCIPQYTVGHDDVLEAAKSMLTDSPGLGLFLGGNH  469 (491)
T ss_pred             cccccCcCCCCCHHHHHHHHHHHHHHHhCCCC--CcccccceehhhcccceecchHHHHHHHHHHHHhCCCCceEeeccc
Confidence               11122345799999999999999986443  45566666699999999999876432221   2  33589999999


Q ss_pred             ccCCCCCccchHHHHHHHHHHHHHH
Q 019274          273 ITTRHGSWSQERSYVTGLEAANRVV  297 (343)
Q Consensus       273 ~~~g~~~~~~ega~~Sg~~aA~~il  297 (343)
                      .. |   .++..|++||..+|.+++
T Consensus       470 y~-G---v~vgdcI~sg~~~A~~v~  490 (491)
T KOG1276|consen  470 YG-G---VSVGDCIESGRKTAVEVI  490 (491)
T ss_pred             cC-C---CChhHHHHhhHHHHHhhc
Confidence            76 3   367889999999998775

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.64  E-value=7.1e-15  Score=141.44  Aligned_cols=236  Identities=11%  Similarity=0.047  Sum_probs=132.2

Q ss_pred             ceeEeecCCCchhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECC-eEEecCEEEEeeChhhHHHhhhhhc
Q 019274           50 FDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGK-ETYSAGAVVLAVGISTLQELIKNSI  128 (343)
Q Consensus        50 ~~~~~~~gG~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g-~~~~ad~VV~a~p~~~~~~Ll~~~~  128 (343)
                      ..+.+|+||| +.|+++|++.++++|++|+++++|++|..++  |+.+++++.. +.+++|.||++..+.....+.+...
T Consensus       214 ~G~~~p~GG~-~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~--g~g~~~~~~~g~~~~ad~vv~~~~~~~~~~l~~~~~  290 (487)
T COG1233         214 GGVFYPRGGM-GALVDALAELAREHGGEIRTGAEVSQILVEG--GKGVGVRTSDGENIEADAVVSNADPALLARLLGEAR  290 (487)
T ss_pred             CCeeeeeCCH-HHHHHHHHHHHHHcCCEEECCCceEEEEEeC--CcceEEeccccceeccceeEecCchhhhhhhhhhhh
Confidence            4467899996 6799999999999999999999999999998  7766677664 5889999999999944444444321


Q ss_pred             ccCchhHHhhccC-cccceEEEEEEeccCCCCCCCcceeecCCCC--c--c---------ceEee-ccccccccCCCCCe
Q 019274          129 LCNREEFLKVLNL-ASIDVVSVKLWFDKKVTVPNVSNACSGFGDS--L--A---------WTFFD-LNKIYDEHKDDSAT  193 (343)
Q Consensus       129 ~~~~~~~~~~~~l-~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~--~--~---------~~~~d-~~~~~~~~~~~~~~  193 (343)
                          . .+...+. +..+....++.++........++.++..+..  .  .         +.+.. .+...+..++++.+
T Consensus       291 ----~-~~~~~~~~~~~~al~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~ps~~Dps~AP~G~~  365 (487)
T COG1233         291 ----R-PRYRGSYLKSLSALSLYLGLKGDLLPLAHHTTILLGDTREQIEEAFDDRAGRPPPLYVSIPSLTDPSLAPEGKH  365 (487)
T ss_pred             ----h-hccccchhhhhHHHHhccCCCCCCcchhhcceEecCCcHHHHHHHhhhhcCCCCceEEeCCCCCCCccCCCCCc
Confidence                0 0111111 1223444555565531111112222221100  0  0         11111 11222334433433


Q ss_pred             EEEEEee--CCCCCCCCCHHHHHHHHHHHHhhhcccCCCCceeeeEEEecCCCccccC--------------CCCCCCCC
Q 019274          194 VIQADFY--HANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFF--------------PGSYKYMM  257 (343)
Q Consensus       194 ~i~~~~~--~~~~~~~~~~~e~~~~~~~~L~~~~p~~~~~~~~~~~~~r~~~~~~~~~--------------~g~~~~~p  257 (343)
                      ...+.+.  +...+.+..++++.+. +..+++.+|++++ .++...+. +|.....+.              .+....||
T Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~-~iv~~~~~-tp~~~e~~~~~~~G~~~~~~~~~~q~~~~rp  442 (487)
T COG1233         366 STFAQLVPVPSLGDYDELKESLADA-IDALEELAPGLRD-RIVAREVL-TPLDLERYLGLPGGDIFGGAHTLDQLGPFRP  442 (487)
T ss_pred             ceeeeeeecCcCCChHHHHHHHHHH-HHHHhhcCCCccc-ceeEEEEe-ChHHHHHhcCCCCCcccchhcChhhhcCCCC
Confidence            1111121  2111122234555555 6689999999987 66665554 332221111              01122355


Q ss_pred             CC-CCCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHHH
Q 019274          258 RG-FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDY  299 (343)
Q Consensus       258 ~~-~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~~  299 (343)
                      .. .++++|||+||+++++|   +++.++..++..++..+..+
T Consensus       443 ~~~~t~i~~LYl~Ga~t~PG---~Gv~g~~g~~~a~~~~~~~~  482 (487)
T COG1233         443 PPKSTPIKGLYLVGASTHPG---GGVPGVPGSAAAVALLIDLD  482 (487)
T ss_pred             CCCCCCcCceEEeCCcCCCC---CCcchhhhhHHHHHhhhccc
Confidence            44 47999999999999876   35556666666665555443

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.62  E-value=9.3e-15  Score=139.40  Aligned_cols=230  Identities=22%  Similarity=0.250  Sum_probs=155.1

Q ss_pred             ecCCCchhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhHHH--hhhhhcccC
Q 019274           55 CRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQE--LIKNSILCN  131 (343)
Q Consensus        55 ~~gG~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~~~--Ll~~~~~~~  131 (343)
                      ..+|+ ..++..++.     |..|+++++|.+|.+.++ +.+ .++.. +..+.+|+||+++|..++..  +-..+.+ +
T Consensus       214 ~~~G~-~~v~~~la~-----~l~I~~~~~v~~i~~~~~-~~~-~~~~~~~~~~~~d~vvvt~pl~vLk~~~i~F~P~L-p  284 (501)
T KOG0029|consen  214 MKGGY-EPVVNSLAE-----GLDIHLNKRVRKIKYGDD-GAV-KVTVETGDGYEADAVVVTVPLGVLKSGLIEFSPPL-P  284 (501)
T ss_pred             hhCCc-cHHHhhcCC-----CcceeeceeeEEEEEecC-Cce-EEEEECCCeeEeeEEEEEccHHHhccCceeeCCCC-c
Confidence            35774 446666654     889999999999999875 542 34443 44599999999999999976  3333333 2


Q ss_pred             chhHHhhccCcccceEEEEEEeccCCCCCCCcceeecCCC-Cc--cc--eEeeccccccccCCCCCeEEEEEee--CCCC
Q 019274          132 REEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGD-SL--AW--TFFDLNKIYDEHKDDSATVIQADFY--HANE  204 (343)
Q Consensus       132 ~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~-~~--~~--~~~d~~~~~~~~~~~~~~~i~~~~~--~~~~  204 (343)
                      ...+++++++....+.++.+.|++.+|.+  ...+++... ..  ..  .+++..   +.   .+..++.....  .+..
T Consensus       285 ~~k~~aI~~lg~g~~~Kv~l~F~~~fW~~--~~d~fg~~~~~~~~~~~~~f~~~~---~~---~~~~~l~~~~~~~~a~~  356 (501)
T KOG0029|consen  285 RWKQEAIDRLGFGLVNKVILEFPRVFWDQ--DIDFFGIVPETSVLRGLFTFYDCK---PV---AGHPVLMSVVVGEAAER  356 (501)
T ss_pred             HHHHHHHHhcCCCceeEEEEEeccccCCC--CcCeEEEccccccccchhhhhhcC---cc---CCCCeEEEEehhhhhHH
Confidence            45568899999999999999999999942  222443321 11  11  112211   11   12223222222  3445


Q ss_pred             CCCCCHHHHHHHHHHHHhhhcccCCCCceeeeEEEecCCCccc------cCCCCCCC-CCCCCCCCCC-eEEeeccccCC
Q 019274          205 LMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTH------FFPGSYKY-MMRGFTSFPN-LFMAGDWITTR  276 (343)
Q Consensus       205 ~~~~~~~e~~~~~~~~L~~~~p~~~~~~~~~~~~~r~~~~~~~------~~~g~~~~-~p~~~~~~~~-L~laGd~~~~g  276 (343)
                      +..++++++++.++..|+++|++.....+++..+.+|......      ..++.... ...+..++.| +||||.+|...
T Consensus       357 ~~~~~~~~~~~~~~~~l~k~f~~~~~~~p~~~~vt~w~~d~~~~gsys~~~~~~~~~~y~~l~~pi~~~~ffage~t~~~  436 (501)
T KOG0029|consen  357 VETLSDSEIVKKAMKLLRKVFGSEEVPDPLDALVTRWGTDPLSGGSYSYVAVGSDGDDYDRLAEPIKNRVFFAGEATSRK  436 (501)
T ss_pred             HhcCCHHHHHHHHHHHHHHHhccCcCCCccceeeeeecccccCCccccccCCCCChhHHHHHhccccCcEEecchhhccc
Confidence            6778999999999999999999433336778888888533221      11221111 1223457788 99999999888


Q ss_pred             CCCccchHHHHHHHHHHHHHHHHhCC
Q 019274          277 HGSWSQERSYVTGLEAANRVVDYLGD  302 (343)
Q Consensus       277 ~~~~~~ega~~Sg~~aA~~il~~~~~  302 (343)
                      ++ ++|+||+.||.++|..|+..+..
T Consensus       437 ~~-~tm~GA~~sG~~~a~~i~~~~~~  461 (501)
T KOG0029|consen  437 YP-GTMHGAYLSGLRAASDILDSLIE  461 (501)
T ss_pred             CC-CchHHHHHhhHHHHHHHHHHHHh
Confidence            88 79999999999999999998874

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=99.60  E-value=2.1e-15  Score=128.15  Aligned_cols=219  Identities=15%  Similarity=0.103  Sum_probs=145.0

Q ss_pred             CCCchhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-C-eEEecCEEEEeeChhhHHHhhhhh--cccCc
Q 019274           57 GTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-K-ETYSAGAVVLAVGISTLQELIKNS--ILCNR  132 (343)
Q Consensus        57 gG~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g-~~~~ad~VV~a~p~~~~~~Ll~~~--~~~~~  132 (343)
                      -||+ .|.+.|+.     ..+|+++++|++|.+.+  + .|.+.++ | +..++|.||+|+|++++..||...  .++ .
T Consensus       105 pgms-alak~LAt-----dL~V~~~~rVt~v~~~~--~-~W~l~~~~g~~~~~~d~vvla~PAPQ~~~LLt~~~~~~p-~  174 (331)
T COG3380         105 PGMS-ALAKFLAT-----DLTVVLETRVTEVARTD--N-DWTLHTDDGTRHTQFDDVVLAIPAPQTATLLTTDADDLP-A  174 (331)
T ss_pred             cchH-HHHHHHhc-----cchhhhhhhhhhheecC--C-eeEEEecCCCcccccceEEEecCCCcchhhcCcccccch-H
Confidence            3543 35554443     45899999999999885  4 4888885 3 578999999999999999888652  221 3


Q ss_pred             hhHHhhccCcccceEEEEEEeccCCCCCCCcceeecCCCCccceEeeccccccccCCCCCeEEEEEee--CCCCCCCCCH
Q 019274          133 EEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFY--HANELMPLKD  210 (343)
Q Consensus       133 ~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~  210 (343)
                      ..+..+..+.|.|++.+.++|.++...+.+. ++. .+..+.|.--|.+.  +... |.+.++.+...  .+.++.+.++
T Consensus       175 ~l~~~~a~V~y~Pc~s~~lg~~q~l~~P~~G-~~v-dg~~laWla~d~sK--~g~~-p~~~~~vvqasp~wSr~h~~~~~  249 (331)
T COG3380         175 ALRAALADVVYAPCWSAVLGYPQPLDRPWPG-NFV-DGHPLAWLARDASK--KGHV-PDGEIWVVQASPDWSREHLDHPA  249 (331)
T ss_pred             HHHHhhccceehhHHHHHhcCCccCCCCCCC-ccc-CCCeeeeeeccccC--CCCC-CcCceEEEEeCchHHHHhhcCCH
Confidence            3557778889999988889999887644332 221 12234563333332  1111 23333333333  2344556678


Q ss_pred             HHHHHHHHHHHhhhcc-cCCCCceeeeEEEecCCCccccCCCCCCCCCCCC-CCCCCeEEeeccccCCCCCccchHHHHH
Q 019274          211 DQVVAKAVSYLSKCIK-DFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGF-TSFPNLFMAGDWITTRHGSWSQERSYVT  288 (343)
Q Consensus       211 ~e~~~~~~~~L~~~~p-~~~~~~~~~~~~~r~~~~~~~~~~g~~~~~p~~~-~~~~~L~laGd~~~~g~~~~~~ega~~S  288 (343)
                      ++.+..+.......++ .+.  ++.....++|+++.|.-..+.    +... ..-.+||+||||+++    +-+|||..|
T Consensus       250 e~~i~~l~aA~~~~~~~~~~--~p~~s~~H~WrYA~P~~~~~~----~~L~ad~~~~l~~cGDwc~G----grVEgA~LS  319 (331)
T COG3380         250 EQVIVALRAAAQELDGDRLP--EPDWSDAHRWRYAIPNDAVAG----PPLDADRELPLYACGDWCAG----GRVEGAVLS  319 (331)
T ss_pred             HHHHHHHHHhhhhccCCCCC--cchHHHhhccccccccccccC----CccccCCCCceeeecccccC----cchhHHHhc
Confidence            8888777777777776 444  466667788999887543332    1111 234689999999873    478999999


Q ss_pred             HHHHHHHHHHHh
Q 019274          289 GLEAANRVVDYL  300 (343)
Q Consensus       289 g~~aA~~il~~~  300 (343)
                      |..+|++|+..+
T Consensus       320 GlAaA~~i~~~L  331 (331)
T COG3380         320 GLAAADHILNGL  331 (331)
T ss_pred             cHHHHHHHHhcC
Confidence            999999998753

>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]

Probab=99.53  E-value=1e-13  Score=126.87  Aligned_cols=239  Identities=17%  Similarity=0.212  Sum_probs=149.5

Q ss_pred             eecCCCchhhhHHHHHHHHHc----C--CeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhHHH----
Q 019274           54 WCRGTLREKIFEPWMDSMRTR----G--CEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQE----  122 (343)
Q Consensus        54 ~~~gG~~~~l~~~l~~~l~~~----G--~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~~~----  122 (343)
                      +...| ...+.+-|++.+.+.    |  .+++++++|.+|..+++ ++| .|++. |+.+.||+||||++...+.+    
T Consensus       217 ~~~kG-y~~iL~~l~~~~p~~~i~~~~~~~~~~~~rv~~I~~~~~-~~v-~l~c~dg~v~~adhVIvTvsLGvLk~~h~~  293 (498)
T KOG0685|consen  217 WNKKG-YKRILKLLMAVIPAQNIELGLWKRIHLNTRVENINWKNT-GEV-KLRCSDGEVFHADHVIVTVSLGVLKEQHHK  293 (498)
T ss_pred             echhH-HHHHHHHHhccCCCcchhcCchhhhcccccceeeccCCC-CcE-EEEEeCCcEEeccEEEEEeechhhhhhhhh
Confidence            33456 456778777755421    2  35667799999999875 665 47775 78899999999999999875    


Q ss_pred             hhhhhcccCchhHHhhccCcccceEEEEEEeccCCCCCCCcc-eeecCCCC--------ccceEeeccccccccCCCCCe
Q 019274          123 LIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSN-ACSGFGDS--------LAWTFFDLNKIYDEHKDDSAT  193 (343)
Q Consensus       123 Ll~~~~~~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~~~-~~~~~~~~--------~~~~~~d~~~~~~~~~~~~~~  193 (343)
                      |+.++ +| ....++|.++....+.+++|.|.+++|.+.... .++-.+..        ..|. =+.....+- . ....
T Consensus       294 lF~P~-LP-~~K~~AIe~lgfGtv~KiFLE~E~pfwp~~~~~i~~lw~~e~l~e~r~~~~~w~-~~~~~f~~v-~-~~~~  368 (498)
T KOG0685|consen  294 LFVPP-LP-AEKQRAIERLGFGTVNKIFLEFEEPFWPSDWNGIQLLWLDEDLEELRSTLDAWE-EDIMGFQPV-S-WAPN  368 (498)
T ss_pred             hcCCC-CC-HHHHHHHHhccCCccceEEEEccCCCCCCCCceeEEEEecCcHHHHhhhhHHHH-hhceEEEEc-C-cchh
Confidence            55443 43 566789999999999999999999998542111 11111111        0010 000000000 0 1224


Q ss_pred             EEEEEee--CCCCCCCCCHHHHHHHHHHHHhhhcccCCCCceeeeEEEecCC-----Ccccc-CCCCCC------CCCCC
Q 019274          194 VIQADFY--HANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPK-----SLTHF-FPGSYK------YMMRG  259 (343)
Q Consensus       194 ~i~~~~~--~~~~~~~~~~~e~~~~~~~~L~~~~p~~~~~~~~~~~~~r~~~-----~~~~~-~~g~~~------~~p~~  259 (343)
                      ++..++.  .+..+..++++++.+.+...|+++.++..-.++....-..|..     +-|.| .+|+..      ..|..
T Consensus       369 vL~gWiaG~~~~~me~lsdEev~e~~~~~lr~fl~n~~iP~p~kilRs~W~snp~frGSYSY~svgs~~~d~~~~a~p~p  448 (498)
T KOG0685|consen  369 VLLGWIAGREARHMETLSDEEVLEGLTKLLRKFLKNPEIPKPKKILRSQWISNPFFRGSYSYRSVGSDGSDTGALALPLP  448 (498)
T ss_pred             hhheeccCCcceehhhCCHHHHHHHHHHHHHHhcCCCCCCCchhhhhhcccCCCccCceeeEeeccccccccchhhccCC
Confidence            5544443  3445678999999999999999999765322333322233421     11222 122111      11211


Q ss_pred             ---CCCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHHHhC
Q 019274          260 ---FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG  301 (343)
Q Consensus       260 ---~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~~~~  301 (343)
                         .++-+.+.|||..|+-.+. .++.||+.||++.|++|+...+
T Consensus       449 ~~~~~~~p~I~FAGEaThr~~Y-sTthGA~~SG~REA~RL~~~y~  492 (498)
T KOG0685|consen  449 LTLVTGRPQILFAGEATHRTFY-STTHGAVLSGWREADRLLEHYE  492 (498)
T ss_pred             ccccCCCceEEEccccccccce-ehhhhhHHhhHHHHHHHHHHHH
Confidence               1245689999999986555 6999999999999999998654

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=99.23  E-value=4.4e-11  Score=105.45  Aligned_cols=139  Identities=16%  Similarity=0.070  Sum_probs=104.2

Q ss_pred             CccCCCCHHHHHHhHHHHHHhhhcCCcccccHHHHHHHHHHHHHhcCC-----CceeEeecCCCchhhhHHHHHHHHHcC
Q 019274            1 MIQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQK-----NFDLVWCRGTLREKIFEPWMDSMRTRG   75 (343)
Q Consensus         1 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~~~~~-----~~~~~~~~gG~~~~l~~~l~~~l~~~G   75 (343)
                      |+++++|.-+.++++.|+.+++|+++..+.+..-+..++.+.. .+..     .-.+....|| +...++.|+..+   +
T Consensus       157 L~~~~f~~af~e~~l~P~~aaiwstp~~d~~~~pa~~~~~f~~-nhGll~l~~rp~wrtV~gg-S~~yvq~laa~~---~  231 (447)
T COG2907         157 LKQRNFGRAFVEDFLQPLVAAIWSTPLADASRYPACNFLVFTD-NHGLLYLPKRPTWRTVAGG-SRAYVQRLAADI---R  231 (447)
T ss_pred             HHhcCccHHHHHHhHHHHHHHHhcCcHhhhhhhhHHHHHHHHh-ccCceecCCCCceeEcccc-hHHHHHHHhccc---c
Confidence            5789999999999999999999999999988766666554331 2211     1112234577 677888777665   6


Q ss_pred             CeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhhHHHhhhhhcccCchhHHhhccCcccceEEE
Q 019274           76 CEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSV  149 (343)
Q Consensus        76 ~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~~~~Ll~~~~~~~~~~~~~~~~l~~~~~~~v  149 (343)
                      ++|.++++|..|.+-.+ | |+-+..+|++.++|.||.|+.+++...||+++.   +.+++.+..+.|+....|
T Consensus       232 ~~i~t~~~V~~l~rlPd-G-v~l~~~~G~s~rFD~vViAth~dqAl~mL~e~s---p~e~qll~a~~Ys~n~aV  300 (447)
T COG2907         232 GRIETRTPVCRLRRLPD-G-VVLVNADGESRRFDAVVIATHPDQALALLDEPS---PEERQLLGALRYSANTAV  300 (447)
T ss_pred             ceeecCCceeeeeeCCC-c-eEEecCCCCccccceeeeecChHHHHHhcCCCC---HHHHHHHHhhhhhhceeE
Confidence            78999999999999885 6 343444588889999999999999999998864   455667788888754444

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=99.18  E-value=8.3e-09  Score=99.18  Aligned_cols=284  Identities=14%  Similarity=0.131  Sum_probs=155.6

Q ss_pred             hhhcCCcccccHHHHHHHHHHHHH---hcCCCceeEeecCCCchhhhHHHHHHHHHcCCeEEcceeeeEEEecCC--CCe
Q 019274           21 VGLFAPAEQCSAAATLGILYFIIL---AHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEE--RCC   95 (343)
Q Consensus        21 ~~~~~~~~~~sa~~~~~~l~~~~~---~~~~~~~~~~~~gG~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~--~g~   95 (343)
                      ..+++..+..||+.+..++.+++.   +-...+.+.+.+....++|+++|.++|+++|++|+++++|++|..+.+  .++
T Consensus       183 ~t~FaF~~whSA~E~rry~~rf~~~~~~l~~~s~l~ft~ynqyeSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~  262 (576)
T PRK13977        183 RTMFAFEKWHSALEMRRYMHRFIHHIGGLPDLSGLKFTKYNQYESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKT  262 (576)
T ss_pred             HHHHCCchhhHHHHHHHHHHHHHHhhccCCccccccCCCCCchhHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceE
Confidence            344677799999999999988731   112234444556666799999999999999999999999999998522  156


Q ss_pred             EEEEEEC--C--e---EEecCEEEEeeChhhHHHhhhhhccc-------CchhH--Hhhcc----Cc----------ccc
Q 019274           96 ISDVVCG--K--E---TYSAGAVVLAVGISTLQELIKNSILC-------NREEF--LKVLN----LA----------SID  145 (343)
Q Consensus        96 v~~V~~~--g--~---~~~ad~VV~a~p~~~~~~Ll~~~~~~-------~~~~~--~~~~~----l~----------~~~  145 (343)
                      |++|.+.  |  +   ....|.||+|++.-+-..-+.+..-+       ...|.  +.+.+    +.          -+.
T Consensus       263 VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t~ns~~G~~~~p~~~~~~~~~~w~LW~~la~~~~~fG~P~~F~~~~~~s~  342 (576)
T PRK13977        263 ATAIHLTRNGKEETIDLTEDDLVFVTNGSITESSTYGDMDTPAPLNRELGGSWTLWKNIAAQSPEFGNPDKFCGDIPESN  342 (576)
T ss_pred             EEEEEEEeCCceeEEEecCCCEEEEeCCcCccccccCCCCCCCCCCCCCCccHHHHHHHHhcCccCCChhhhcCCcccce
Confidence            8888773  2  2   23688999999876543222221000       01111  11211    11          011


Q ss_pred             eEEEEEEeccC-C-------CCCCCcc------eeecCCCCccceEeecc-ccccccCCCCCeEEEEEee---C------
Q 019274          146 VVSVKLWFDKK-V-------TVPNVSN------ACSGFGDSLAWTFFDLN-KIYDEHKDDSATVIQADFY---H------  201 (343)
Q Consensus       146 ~~~v~l~~~~~-~-------~~~~~~~------~~~~~~~~~~~~~~d~~-~~~~~~~~~~~~~i~~~~~---~------  201 (343)
                      .....+-++.+ +       ....|..      .+..+. .++|. .+.+ ..+|-+.+.+..+..++.|   +      
T Consensus       343 w~SfTvT~~~~~~~~~i~~~t~~~p~~g~~~tg~~vt~~-dS~W~-~s~~v~~QP~F~~Qp~d~~v~WgY~l~~~~~G~y  420 (576)
T PRK13977        343 WESFTVTTKDPKILPYIERITGRDPGSGKTVTGGIVTFK-DSNWL-MSITVNRQPHFKNQPKNETVVWGYGLYPDRPGNY  420 (576)
T ss_pred             EEEEEEEcCCHHHHHHHHHHhCCCCCCCccccCceeEEe-cCCee-EEEEecCCCCCCCCCCCcEEEEEEecccCCCCCc
Confidence            11111111111 0       0001111      111111 12342 2211 1124444434444444443   2      


Q ss_pred             -CCCCCCCCHHHHHHHHHHHHhhhcccCCCCceeeeEEE----ecCCCccccCCCCCCCCCCCCC-CCCCeEEeeccccC
Q 019274          202 -ANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIR----RFPKSLTHFFPGSYKYMMRGFT-SFPNLFMAGDWITT  275 (343)
Q Consensus       202 -~~~~~~~~~~e~~~~~~~~L~~~~p~~~~~~~~~~~~~----r~~~~~~~~~~g~~~~~p~~~~-~~~~L~laGd~~~~  275 (343)
                       ...+.+++.+||.++++-+|.  +|.-.-.++....+.    -.|..+..+.|.....||.... +..||-|.|.++..
T Consensus       421 vkKpm~~CtG~Ei~~E~l~Hl~--~~~~~~~~i~~~~~~~ip~~MP~ita~f~pR~~gDRP~VvP~g~~Nla~iGqFvE~  498 (576)
T PRK13977        421 VKKPMRECTGEEILQELLYHLG--VPEDKIEELAADSANTIPVMMPYITSQFMPRAKGDRPLVVPEGSTNLAFIGQFAET  498 (576)
T ss_pred             cCCchhhCCHHHHHHHHHHhcC--CchhhHHHHHhhcCceEeeccchhhhhhCCCCCCCCCCcCCCCcceeeeeeccccC
Confidence             124567899999999988883  221000011101111    1244444445554445776653 56799999999874


Q ss_pred             CCC-CccchHHHHHHHHHHHHHHHHhCCCCcccccc
Q 019274          276 RHG-SWSQERSYVTGLEAANRVVDYLGDGSFSKIIP  310 (343)
Q Consensus       276 g~~-~~~~ega~~Sg~~aA~~il~~~~~~~~~~~~~  310 (343)
                      ... +-++|.++.+|+.|+-.+++--+  ..+++++
T Consensus       499 p~d~vft~eysvRta~~AVy~L~~~~~--~~~~v~~  532 (576)
T PRK13977        499 PRDTVFTTEYSVRTAMEAVYTLLGVDR--GVPEVFP  532 (576)
T ss_pred             CCCEEEEEehhhHHHHHHHHHHhCCCC--CCCCcCc
Confidence            222 26899999999999999877532  3444454

>TIGR02352 thiamin_ThiO glycine oxidase ThiO

Probab=98.67  E-value=4.1e-06  Score=76.96  Aligned_cols=195  Identities=12%  Similarity=0.121  Sum_probs=109.8

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhhHHHhhhhhcccCchhHHhhcc
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLN  140 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~~~~Ll~~~~~~~~~~~~~~~~  140 (343)
                      ..++..|++.+++.|++++.+++|++|..++  +++++|.+++++++||.||+|+++++-. |.+   ++          
T Consensus       137 ~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~--~~~~~v~~~~g~~~a~~vV~a~G~~~~~-l~~---~~----------  200 (337)
T TIGR02352       137 RALLKALEKALEKLGVEIIEHTEVQHIEIRG--EKVTAIVTPSGDVQADQVVLAAGAWAGE-LLP---LP----------  200 (337)
T ss_pred             HHHHHHHHHHHHHcCCEEEccceEEEEEeeC--CEEEEEEcCCCEEECCEEEEcCChhhhh-ccc---CC----------
Confidence            5688999999999999999999999999877  6777888876689999999999998754 433   10          


Q ss_pred             CcccceEEEEEEeccCCCC--CCCcceeecCCCCccceEeeccccccccCCCCCeEEEEEeeCCCCCCCCCHHHHHHHHH
Q 019274          141 LASIDVVSVKLWFDKKVTV--PNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAV  218 (343)
Q Consensus       141 l~~~~~~~v~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~e~~~~~~  218 (343)
                      +....  ...+.++.+...  ..+..... .+ .  ..++     .+.   +.+.++.-.......+....+++..+.++
T Consensus       201 ~~~~~--g~~~~~~~~~~~~~~~~~~~~~-~~-~--~~y~-----~p~---~~g~~~iG~~~~~~~~~~~~~~~~~~~l~  266 (337)
T TIGR02352       201 LRPVR--GQPLRLEAPAVPLLNRPLRAVV-YG-R--RVYI-----VPR---RDGRLVVGATMEESGFDTTPTLGGIKELL  266 (337)
T ss_pred             ccccC--ceEEEeeccccccCCcccceEE-Ec-C--CEEE-----EEc---CCCeEEEEEeccccCccCCCCHHHHHHHH
Confidence            11111  111222221100  00100000 00 0  0011     010   12333221211112222223456788899


Q ss_pred             HHHhhhcccCCCCceeeeEEEecCCCccccCCCCCCCCCCCC--CCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHH
Q 019274          219 SYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGF--TSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRV  296 (343)
Q Consensus       219 ~~L~~~~p~~~~~~~~~~~~~r~~~~~~~~~~g~~~~~p~~~--~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~i  296 (343)
                      +.+.++||.+.+.++...    |.. +..+++++   .|...  ...+|+|+++.+  .|+   ++--+...|+.+|+.|
T Consensus       267 ~~~~~~~P~l~~~~~~~~----~~g-~r~~t~D~---~piig~~~~~~~~~~~~g~--~g~---G~~~~p~~g~~la~~i  333 (337)
T TIGR02352       267 RDAYTILPALKEARLLET----WAG-LRPGTPDN---LPYIGEHPEDRRLLIATGH--YRN---GILLAPATAEVIADLI  333 (337)
T ss_pred             HHHHHhCCCcccCcHHHh----eec-CCCCCCCC---CCEeCccCCCCCEEEEccc--ccC---ceehhhHHHHHHHHHH
Confidence            999999999865343222    211 11223332   23221  235799998766  233   3455788999999988


Q ss_pred             HH
Q 019274          297 VD  298 (343)
Q Consensus       297 l~  298 (343)
                      +.
T Consensus       334 ~~  335 (337)
T TIGR02352       334 LG  335 (337)
T ss_pred             hc
Confidence            74

This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=98.65  E-value=2.7e-06  Score=78.48  Aligned_cols=63  Identities=24%  Similarity=0.282  Sum_probs=52.4

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhhHHHhhhh
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKN  126 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~~~~Ll~~  126 (343)
                      ..++++|.+.+++.|++|+.+++|++|..++  +++.+|.++++.+.||.||+|++++... |++.
T Consensus       147 ~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~--~~v~gv~~~~g~i~ad~vV~a~G~~s~~-l~~~  209 (358)
T PF01266_consen  147 RRLIQALAAEAQRAGVEIRTGTEVTSIDVDG--GRVTGVRTSDGEIRADRVVLAAGAWSPQ-LLPL  209 (358)
T ss_dssp             HHHHHHHHHHHHHTT-EEEESEEEEEEEEET--TEEEEEEETTEEEEECEEEE--GGGHHH-HHHT
T ss_pred             cchhhhhHHHHHHhhhhccccccccchhhcc--cccccccccccccccceeEeccccccee-eeec
Confidence            5699999999999999999999999999998  7888899987679999999999997654 5544

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=98.64  E-value=2.1e-07  Score=88.32  Aligned_cols=114  Identities=12%  Similarity=0.087  Sum_probs=74.7

Q ss_pred             CccCCCCHHHHHHhHHHHHHhhhcCCcccccHHHHHHHHHHHH--HhcCCCceeEeecCCCchhhhHHHHHHHHHcCCeE
Q 019274            1 MIQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFII--LAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEF   78 (343)
Q Consensus         1 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~--~~~~~~~~~~~~~gG~~~~l~~~l~~~l~~~G~~i   78 (343)
                      |++++++++..+.+..-+. ..+.....+.++...+..+..++  ++..+.+.+.||.||+ ..|+++|++.+...|+++
T Consensus       172 L~~~~ls~~~~d~i~~~ia-l~~~~~~~~~pa~~tl~ri~~y~~S~~~~g~~p~~yp~gG~-g~L~qal~r~~a~~Gg~~  249 (443)
T PTZ00363        172 YKKFGLEDNTIDFVGHAVA-LYTNDDYLNKPAIETVMRIKLYMDSLSRYGKSPFIYPLYGL-GGLPQAFSRLCAIYGGTY  249 (443)
T ss_pred             HHHhCCCHHHHHHHHHHHH-hhcccccccCCHHHHHHHHHHHHHHHhhccCCcceeeCCCH-HHHHHHHHHHHHHcCcEE
Confidence            3567777776663322222 11111112233444444333332  1222233457899996 569999999999999999


Q ss_pred             EcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeCh
Q 019274           79 LDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGI  117 (343)
Q Consensus        79 ~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~  117 (343)
                      +++++|++|..+++ |++++|+++ |++++|+.||++.+.
T Consensus       250 ~L~~~V~~I~~~~~-g~~~~V~~~~Ge~i~a~~VV~~~s~  288 (443)
T PTZ00363        250 MLNTPVDEVVFDEN-GKVCGVKSEGGEVAKCKLVICDPSY  288 (443)
T ss_pred             EcCCeEEEEEEcCC-CeEEEEEECCCcEEECCEEEECccc
Confidence            99999999998764 678889885 778999999996543

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=98.57  E-value=1.2e-05  Score=76.34  Aligned_cols=200  Identities=12%  Similarity=0.016  Sum_probs=107.1

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhhHHHhhhhhcccCchhHHhhcc
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLN  140 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~~~~Ll~~~~~~~~~~~~~~~~  140 (343)
                      ..++++|.+.+++.|++|+++++|++|..++  +++++|++++.+++||+||+|++++... +++..... .+    +..
T Consensus       201 ~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~--~~~~~v~t~~~~~~a~~VV~a~G~~~~~-l~~~~g~~-~p----i~p  272 (416)
T PRK00711        201 QLFTQRLAAMAEQLGVKFRFNTPVDGLLVEG--GRITGVQTGGGVITADAYVVALGSYSTA-LLKPLGVD-IP----VYP  272 (416)
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEEEEecC--CEEEEEEeCCcEEeCCEEEECCCcchHH-HHHHhCCC-cc----cCC
Confidence            3678899999999999999999999999877  6667788887789999999999998642 43321100 00    111


Q ss_pred             CcccceEEEEEEeccCCCCCCCcceeecCCCCccceEeeccccccccCCCCCeEEEEEeeCCCCCCCCCHHHHHHHHHHH
Q 019274          141 LASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSY  220 (343)
Q Consensus       141 l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~  220 (343)
                      .+.   ..+.+-.+....  .+...+.  +... ...+     .+    .++.++.........+....+.+..+.+.+.
T Consensus       273 ~rg---~~~~~~~~~~~~--~p~~~~~--~~~~-~~~~-----~~----~~~~~~iG~~~~~~~~~~~~~~~~~~~l~~~  335 (416)
T PRK00711        273 LKG---YSLTVPITDEDR--APVSTVL--DETY-KIAI-----TR----FDDRIRVGGMAEIVGFDLRLDPARRETLEMV  335 (416)
T ss_pred             ccc---eEEEEecCCCCC--CCceeEE--eccc-CEEE-----ee----cCCceEEEEEEEecCCCCCCCHHHHHHHHHH
Confidence            111   111111111111  1110010  0000 0001     00    1222221111111111222235567788888


Q ss_pred             HhhhcccCCCCceeeeEEEecCCCccccCCCCCCCCCCCC-CCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHH
Q 019274          221 LSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGF-TSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD  298 (343)
Q Consensus       221 L~~~~p~~~~~~~~~~~~~r~~~~~~~~~~g~~~~~p~~~-~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~  298 (343)
                      +.++||.+.+..+...    |..- ..++++..   |..- .+.+|+|++..+.  |+   ++.-+..+|+.+|+.|+.
T Consensus       336 ~~~~~P~l~~~~~~~~----w~G~-r~~t~D~~---PiIG~~~~~gl~~a~G~~--g~---G~~~ap~~g~~la~li~g  401 (416)
T PRK00711        336 VRDLFPGGGDLSQATF----WTGL-RPMTPDGT---PIVGATRYKNLWLNTGHG--TL---GWTMACGSGQLLADLISG  401 (416)
T ss_pred             HHHHCCCcccccccce----eecc-CCCCCCCC---CEeCCcCCCCEEEecCCc--hh---hhhhhhhHHHHHHHHHcC
Confidence            9999999865333322    3221 12333332   2111 1358999987662  33   345588899999988875

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=98.44  E-value=5e-05  Score=71.46  Aligned_cols=272  Identities=15%  Similarity=0.115  Sum_probs=143.9

Q ss_pred             HHHhhhcCCcccccHHHHHHHHHHHHHhcCC---CceeEeecCCCchhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCC
Q 019274           18 LVQVGLFAPAEQCSAAATLGILYFIILAHQK---NFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERC   94 (343)
Q Consensus        18 ~~~~~~~~~~~~~sa~~~~~~l~~~~~~~~~---~~~~~~~~gG~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g   94 (343)
                      +++.++++.-...||.++-.++.+++..-++   ...+...+-..+++++.+|.++|+++|+++++|++|+.|..+.+++
T Consensus       161 ~~W~T~FAFqpWhSa~E~rRyl~Rf~h~~~~l~~l~~l~~T~YNQyeSii~Pl~~~L~~~GV~F~~~t~V~di~~~~~~~  240 (500)
T PF06100_consen  161 YMWSTMFAFQPWHSAVEFRRYLHRFIHEIPGLNDLSGLDRTKYNQYESIILPLIRYLKSQGVDFRFNTKVTDIDFDITGD  240 (500)
T ss_pred             HhHHHhhccCcchhHHHHHHHHHHHHHhcCCCCCccccccCccccHHHHHHHHHHHHHHCCCEEECCCEEEEEEEEccCC
Confidence            4556677888899999999999887522111   1122223334478999999999999999999999999998864312


Q ss_pred             -e-EEEEEEC--C--eEE---ecCEEEEeeChhhHHHhhhhhccc-------CchhH--Hhhcc----Cc----------
Q 019274           95 -C-ISDVVCG--K--ETY---SAGAVVLAVGISTLQELIKNSILC-------NREEF--LKVLN----LA----------  142 (343)
Q Consensus        95 -~-v~~V~~~--g--~~~---~ad~VV~a~p~~~~~~Ll~~~~~~-------~~~~~--~~~~~----l~----------  142 (343)
                       + ++.+.+.  |  +++   +-|.|+++.+.-+-..-..+..-+       ...|.  +.+.+    +.          
T Consensus       241 ~~~~~~i~~~~~g~~~~i~l~~~DlV~vT~GS~t~~s~~G~~~~p~~~~~~~~~~W~LW~~la~k~~~FG~P~~F~~~~~  320 (500)
T PF06100_consen  241 KKTATRIHIEQDGKEETIDLGPDDLVFVTNGSMTEGSTYGDNDTPPPLNKELGGSWSLWKNLAAKSPDFGNPEKFCTRIP  320 (500)
T ss_pred             CeeEEEEEEEcCCCeeEEEeCCCCEEEEECCccccccccCCCCCCCCCCCCCCchHHHHHHHHhcCcCCCChhhhcCCcc
Confidence             2 4455442  3  233   467888888754332211111000       01111  11211    11          


Q ss_pred             ccce-EEEEEEeccC-C-------CCCCC------cceeecCCCCccceEeecc-ccccccCCCCCeEEEEEee---C--
Q 019274          143 SIDV-VSVKLWFDKK-V-------TVPNV------SNACSGFGDSLAWTFFDLN-KIYDEHKDDSATVIQADFY---H--  201 (343)
Q Consensus       143 ~~~~-~~v~l~~~~~-~-------~~~~~------~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~~~~i~~~~~---~--  201 (343)
                      -+.. ....+-++.+ +       ....|      .+.+..+. .++|. .+.+ ...|-+.+.+..+..++.|   +  
T Consensus       321 ~s~w~eSfTvT~~d~~~~~~i~~lt~~~p~~g~~~tGgliT~~-DS~Wl-mS~~i~~QP~F~~QP~dv~V~WgYgL~pd~  398 (500)
T PF06100_consen  321 ESKWFESFTVTLKDPKFFDYIEKLTGNDPYSGKVGTGGLITFK-DSNWL-MSITIPRQPHFPDQPEDVQVFWGYGLFPDK  398 (500)
T ss_pred             cceeEEEEEEEecChHHHHHHHHHHCCCCCcCccCcCceeEec-cCCeE-EEEEECCCCccCCCCCCeEEEEEEecccCC
Confidence            0111 1111112211 0       00011      11111111 12342 2211 1124444444455445544   2  


Q ss_pred             -----CCCCCCCCHHHHHHHHHHHHhhhcccCCCCceeeeEEEe----cCCCccccCCCCCCCCCCCCC-CCCCeEEeec
Q 019274          202 -----ANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRR----FPKSLTHFFPGSYKYMMRGFT-SFPNLFMAGD  271 (343)
Q Consensus       202 -----~~~~~~~~~~e~~~~~~~~L~~~~p~~~~~~~~~~~~~r----~~~~~~~~~~g~~~~~p~~~~-~~~~L~laGd  271 (343)
                           ...+.+++.+||.++++.+|.  +|.-....+....+..    .|..+..+.|.....||.... +..||-|.|.
T Consensus       399 ~GnyVkKpM~eCtG~EIl~ElL~HLg--~~~~~~~~~~~~~~~tiP~~MP~its~fmpR~~gDRP~VvP~g~~NlafiGQ  476 (500)
T PF06100_consen  399 EGNYVKKPMLECTGEEILTELLYHLG--FPDDEIEELAKQSTNTIPCMMPYITSQFMPRAKGDRPQVVPEGSTNLAFIGQ  476 (500)
T ss_pred             CCCccCCchhhCChHHHHHHHHHhcC--CChhhhhHhhccCceEEEeccccchhhccCCCCCCCCCcCCCCcceeEEEEc
Confidence                 124567889999999998886  4432110111011111    244444455555555776654 5679999999


Q ss_pred             cccCCCC-CccchHHHHHHHHHH
Q 019274          272 WITTRHG-SWSQERSYVTGLEAA  293 (343)
Q Consensus       272 ~~~~g~~-~~~~ega~~Sg~~aA  293 (343)
                      ++..... +-++|.++.+|+.|+
T Consensus       477 FvE~p~D~vfT~EYSVRtA~~AV  499 (500)
T PF06100_consen  477 FVEIPRDTVFTVEYSVRTAQEAV  499 (500)
T ss_pred             ccccCCCEEEEEeehhhhhhhhc
Confidence            9874222 258999999999875

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=98.27  E-value=0.00017  Score=68.23  Aligned_cols=197  Identities=14%  Similarity=0.174  Sum_probs=105.4

Q ss_pred             hhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhhHH--HhhhhhcccCchhHHhhc
Q 019274           62 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQ--ELIKNSILCNREEFLKVL  139 (343)
Q Consensus        62 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~~~--~Ll~~~~~~~~~~~~~~~  139 (343)
                      .++.+|++.+++.|++++.+++|++|..+++ +++++|++++.++.+++||++++++...  +++... ++         
T Consensus       184 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~-~~~~~v~t~~g~i~a~~vVvaagg~~~~l~~~~g~~-~~---------  252 (407)
T TIGR01373       184 AVAWGYARGADRRGVDIIQNCEVTGFIRRDG-GRVIGVETTRGFIGAKKVGVAVAGHSSVVAAMAGFR-LP---------  252 (407)
T ss_pred             HHHHHHHHHHHHCCCEEEeCCEEEEEEEcCC-CcEEEEEeCCceEECCEEEECCChhhHHHHHHcCCC-CC---------
Confidence            4667788888999999999999999986532 5667788876689999999999887642  221111 10         


Q ss_pred             cCcccceEEEEEEeccCCCCCCCcceeecCCCCccceEeeccccccccCCCCCeEEEEEeeC-CCCCCCCCHHHHHHHHH
Q 019274          140 NLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYH-ANELMPLKDDQVVAKAV  218 (343)
Q Consensus       140 ~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~e~~~~~~  218 (343)
                       +....   ..+.+..+.. +.....+.. . . ...++-     +   .+++.++...... ........+.+..+.++
T Consensus       253 -~~~~~---~~~~~~~~~~-~~~~~~~~~-~-~-~~~y~~-----p---~~~g~~~ig~~~~~~~~~~~~~~~~~~~~l~  316 (407)
T TIGR01373       253 -IESHP---LQALVSEPLK-PIIDTVVMS-N-A-VHFYVS-----Q---SDKGELVIGGGIDGYNSYAQRGNLPTLEHVL  316 (407)
T ss_pred             -cCccc---ceEEEecCCC-CCcCCeEEe-C-C-CceEEE-----E---cCCceEEEecCCCCCCccCcCCCHHHHHHHH
Confidence             00110   1111122221 100011110 0 0 011110     1   0233333221111 11111223456788899


Q ss_pred             HHHhhhcccCCCCceeeeEEEecCCCccccCCCCCCCCCCC-CCCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHH
Q 019274          219 SYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRG-FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVV  297 (343)
Q Consensus       219 ~~L~~~~p~~~~~~~~~~~~~r~~~~~~~~~~g~~~~~p~~-~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il  297 (343)
                      +.+.++||.+.+..+.    ..|.. ...++|+..   |.. ..+.+|+|++..+.  |+|   +..|..+|+.+|+.|+
T Consensus       317 ~~~~~~~P~l~~~~~~----~~w~G-~~~~t~D~~---PiIg~~~~~gl~~a~G~~--g~G---~~~ap~~G~~la~li~  383 (407)
T TIGR01373       317 AAILEMFPILSRVRML----RSWGG-IVDVTPDGS---PIIGKTPLPNLYLNCGWG--TGG---FKATPASGTVFAHTLA  383 (407)
T ss_pred             HHHHHhCCCcCCCCeE----EEecc-ccccCCCCC---ceeCCCCCCCeEEEeccC--Ccc---hhhchHHHHHHHHHHh
Confidence            9999999998653332    22422 223344433   222 12358999987652  343   4457888999998886


Q ss_pred             H
Q 019274          298 D  298 (343)
Q Consensus       298 ~  298 (343)
                      .
T Consensus       384 ~  384 (407)
T TIGR01373       384 R  384 (407)
T ss_pred             C
Confidence            4

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=98.23  E-value=5.7e-05  Score=72.69  Aligned_cols=56  Identities=16%  Similarity=0.035  Sum_probs=46.5

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhhH
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL  120 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~~  120 (343)
                      ..++++|++.+++.|++|+.+++|++|.. +  + .+.|++++++++||+||+|++++..
T Consensus       183 ~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~--~-~~~v~t~~g~v~A~~VV~Atga~s~  238 (460)
T TIGR03329       183 GLLVRGLRRVALELGVEIHENTPMTGLEE-G--Q-PAVVRTPDGQVTADKVVLALNAWMA  238 (460)
T ss_pred             HHHHHHHHHHHHHcCCEEECCCeEEEEee-C--C-ceEEEeCCcEEECCEEEEccccccc
Confidence            45789999999999999999999999974 3  2 2457777668999999999998754

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain

Probab=98.19  E-value=8.7e-05  Score=69.62  Aligned_cols=63  Identities=16%  Similarity=0.121  Sum_probs=49.9

Q ss_pred             eecCCC--chhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhH
Q 019274           54 WCRGTL--REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTL  120 (343)
Q Consensus        54 ~~~gG~--~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~  120 (343)
                      ++.+|.  ...++++|.+.+++ |++|+.+++|++|..++  ++ +.|++. |..++||+||+|++++..
T Consensus       126 ~~~~g~idp~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~--~~-~~v~t~~g~~~~a~~vV~a~G~~~~  191 (381)
T TIGR03197       126 FPQGGWLSPPQLCRALLAHAGI-RLTLHFNTEITSLERDG--EG-WQLLDANGEVIAASVVVLANGAQAG  191 (381)
T ss_pred             eCCCcccChHHHHHHHHhccCC-CcEEEeCCEEEEEEEcC--Ce-EEEEeCCCCEEEcCEEEEcCCcccc
Confidence            444442  25688899988888 99999999999999876  55 567776 446899999999999864

In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=98.16  E-value=0.00046  Score=64.60  Aligned_cols=57  Identities=25%  Similarity=0.336  Sum_probs=47.4

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhhH
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL  120 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~~  120 (343)
                      ..+++.|.+.+++.|++++.+++|++|..++  +++ .|+++++++.||.||+|++++..
T Consensus       145 ~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~--~~~-~v~~~~~~i~a~~vV~aaG~~~~  201 (380)
T TIGR01377       145 EKALRALQELAEAHGATVRDGTKVVEIEPTE--LLV-TVKTTKGSYQANKLVVTAGAWTS  201 (380)
T ss_pred             HHHHHHHHHHHHHcCCEEECCCeEEEEEecC--CeE-EEEeCCCEEEeCEEEEecCcchH
Confidence            3578888888889999999999999998876  554 47777668999999999998753

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1

Probab=98.10  E-value=1.2e-05  Score=74.38  Aligned_cols=107  Identities=21%  Similarity=0.186  Sum_probs=69.8

Q ss_pred             CccCCCCHHHHHHhHHHHHHhhhcCCcccccHHHHHHHHHHHHHhcCCCceeEeecCCCchhhhHHHHHHHHHcCCeEEc
Q 019274            1 MIQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLD   80 (343)
Q Consensus         1 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~~~~~~~~~~~~~gG~~~~l~~~l~~~l~~~G~~i~~   80 (343)
                      |+++|+++++++.++.+.+..-|+-+. ++.+...+-.+.    +..  ...--.+|| ...|++.|.+   +.|++| +
T Consensus        76 L~~~gi~~~fi~Elv~a~tRvNYgQ~~-~i~a~~G~vSla----~a~--~gl~sV~GG-N~qI~~~ll~---~S~A~v-l  143 (368)
T PF07156_consen   76 LKENGISERFINELVQAATRVNYGQNV-NIHAFAGLVSLA----GAT--GGLWSVEGG-NWQIFEGLLE---ASGANV-L  143 (368)
T ss_pred             HHHCCCCHHHHHHHHHhheEeeccccc-chhhhhhheeee----ecc--CCceEecCC-HHHHHHHHHH---HccCcE-e
Confidence            467899999999999999999988763 444433322221    111  111234688 6778887765   468999 9


Q ss_pred             ceeeeEE-EecCCCCe-EEEEEEC---C-eEEecCEEEEeeChhhH
Q 019274           81 GRRVTDF-IYDEERCC-ISDVVCG---K-ETYSAGAVVLAVGISTL  120 (343)
Q Consensus        81 ~~~V~~I-~~~~~~g~-v~~V~~~---g-~~~~ad~VV~a~p~~~~  120 (343)
                      +++|++| ...++ +. .+.|...   + ..-.+|.||+|+|....
T Consensus       144 ~~~Vt~I~~~~~~-~~~~y~v~~~~~~~~~~~~yD~VVIAtPl~~~  188 (368)
T PF07156_consen  144 NTTVTSITRRSSD-GYSLYEVTYKSSSGTESDEYDIVVIATPLQQS  188 (368)
T ss_pred             cceeEEEEeccCC-CceeEEEEEecCCCCccccCCEEEECCCcccc
Confidence            9999999 44443 32 2334433   2 23357999999999644

8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=98.09  E-value=0.00051  Score=65.07  Aligned_cols=57  Identities=19%  Similarity=0.249  Sum_probs=45.4

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE--CC----eEEecCEEEEeeChhhH
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GK----ETYSAGAVVLAVGISTL  120 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~--~g----~~~~ad~VV~a~p~~~~  120 (343)
                      ..++..|.+.+++.|++|+.+++|++|..++  +.+. +.+  .+    .+++||+||+|++++..
T Consensus       197 ~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~--~~~~-v~~~~~~~~~~~~i~a~~vV~a~G~~s~  259 (410)
T PRK12409        197 HKFTTGLAAACARLGVQFRYGQEVTSIKTDG--GGVV-LTVQPSAEHPSRTLEFDGVVVCAGVGSR  259 (410)
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEEeC--CEEE-EEEEcCCCCccceEecCEEEECCCcChH
Confidence            4567888999999999999999999998766  5543 433  22    26899999999999874

>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function

Probab=97.99  E-value=6.9e-05  Score=70.66  Aligned_cols=109  Identities=17%  Similarity=0.155  Sum_probs=75.9

Q ss_pred             ccCCCCHHHHHHhHHHHHHhhhcCCcc-cccHHHHHHHHHHHH--HhcCCCceeEeecCCCchhhhHHHHHHHHHcCCeE
Q 019274            2 IQFGCSERLYRNVIGPLVQVGLFAPAE-QCSAAATLGILYFII--LAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEF   78 (343)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~sa~~~~~~l~~~~--~~~~~~~~~~~~~gG~~~~l~~~l~~~l~~~G~~i   78 (343)
                      +++++++...+.+...++  ++..+.. +.++...+..++.++  ++..+.+.+.||..|.++ |++++.+...=.||..
T Consensus       173 ~~f~L~~~~~~~i~haia--L~~~~~~~~~p~~~~l~ri~~yl~SlgryG~sPfLyP~YG~GE-LpQ~FcRl~AV~GG~Y  249 (438)
T PF00996_consen  173 KKFGLSENLIDFIGHAIA--LSLDDSYLTEPAREGLERIKLYLSSLGRYGKSPFLYPLYGLGE-LPQAFCRLSAVYGGTY  249 (438)
T ss_dssp             HHTTS-HHHHHHHHHHTS---SSSSGGGGSBSHHHHHHHHHHHHHHCCCSSSSEEEETT-TTH-HHHHHHHHHHHTT-EE
T ss_pred             HhcCCCHHHHHHHHHhhh--hccCcccccccHHHHHHHHHHHHHHHhccCCCCEEEEccCCcc-HHHHHHHHhhhcCcEE
Confidence            567887777776644332  2222221 335667777777663  233445578899988765 9999999988889999


Q ss_pred             EcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEe
Q 019274           79 LDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLA  114 (343)
Q Consensus        79 ~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a  114 (343)
                      .||++|.+|..+++ |++.+|..+|++++|+.||..
T Consensus       250 ~L~~~i~~i~~~~~-g~~~gV~s~ge~v~~k~vI~d  284 (438)
T PF00996_consen  250 MLNRPIDEIVVDED-GKVIGVKSEGEVVKAKKVIGD  284 (438)
T ss_dssp             ESS--EEEEEEETT-TEEEEEEETTEEEEESEEEEE
T ss_pred             EeCCccceeeeecC-CeEEEEecCCEEEEcCEEEEC
Confidence            99999999999665 888899988999999999963

This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=97.95  E-value=0.0017  Score=60.57  Aligned_cols=57  Identities=25%  Similarity=0.240  Sum_probs=46.5

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhhH
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL  120 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~~  120 (343)
                      ..++..+.+.+.+.|++++++++|++|..++  +. +.|++++.+++||.||.|++++..
T Consensus       149 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~--~~-~~v~~~~g~~~a~~vV~A~G~~~~  205 (376)
T PRK11259        149 ELAIKAHLRLAREAGAELLFNEPVTAIEADG--DG-VTVTTADGTYEAKKLVVSAGAWVK  205 (376)
T ss_pred             HHHHHHHHHHHHHCCCEEECCCEEEEEEeeC--Ce-EEEEeCCCEEEeeEEEEecCcchh
Confidence            3466777777888899999999999999876  54 457777568999999999998754

>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]

Probab=97.95  E-value=0.0008  Score=60.12  Aligned_cols=63  Identities=22%  Similarity=0.300  Sum_probs=51.9

Q ss_pred             hhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhHHHhhhh
Q 019274           63 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQELIKN  126 (343)
Q Consensus        63 l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~~~Ll~~  126 (343)
                      -++++...++++|+.++-+..|..+...++++..++|.+. |..+.|+.+|+|+++|..+ ||+.
T Consensus       155 slk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~k-lL~~  218 (399)
T KOG2820|consen  155 SLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINK-LLPT  218 (399)
T ss_pred             HHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHHh-hcCc
Confidence            4577888899999999999999999876543555677776 6679999999999999886 6664

>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit

Probab=97.78  E-value=0.017  Score=56.61  Aligned_cols=58  Identities=19%  Similarity=0.192  Sum_probs=49.3

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC----C--eEEecCEEEEeeChhhH
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG----K--ETYSAGAVVLAVGISTL  120 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~----g--~~~~ad~VV~a~p~~~~  120 (343)
                      ..++.++++.++++|++|+.+++|++|..++  +++++|++.    |  .+++|+.||.|++++.-
T Consensus       128 ~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~~--~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~  191 (516)
T TIGR03377       128 FRLVAANVLDAQEHGARIFTYTKVTGLIREG--GRVTGVKVEDHKTGEEERIEAQVVINAAGIWAG  191 (516)
T ss_pred             HHHHHHHHHHHHHcCCEEEcCcEEEEEEEEC--CEEEEEEEEEcCCCcEEEEEcCEEEECCCcchH
Confidence            4578889999999999999999999999877  777777752    3  36899999999999864

Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=97.74  E-value=0.0047  Score=55.34  Aligned_cols=56  Identities=21%  Similarity=0.219  Sum_probs=44.5

Q ss_pred             hhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC--CeEEecCEEEEeeChhhH
Q 019274           62 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KETYSAGAVVLAVGISTL  120 (343)
Q Consensus        62 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~--g~~~~ad~VV~a~p~~~~  120 (343)
                      .+.+.|.+.+++.|++++++++|+++..++  +++. +.+.  +.+++||.||.|.+....
T Consensus        92 ~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~--~~~~-~~~~~~~~~~~a~~vv~a~G~~s~  149 (295)
T TIGR02032        92 AFDEQLAERAQEAGAELRLGTTVLDVEIHD--DRVV-VIVRGGEGTVTAKIVIGADGSRSI  149 (295)
T ss_pred             HHHHHHHHHHHHcCCEEEeCcEEeeEEEeC--CEEE-EEEcCccEEEEeCEEEECCCcchH
Confidence            466788888888999999999999998877  4432 3333  468999999999998753

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=97.72  E-value=0.002  Score=65.05  Aligned_cols=64  Identities=16%  Similarity=0.111  Sum_probs=49.9

Q ss_pred             EeecCCC--chhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECC-eEEecCEEEEeeChhhH
Q 019274           53 VWCRGTL--REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGK-ETYSAGAVVLAVGISTL  120 (343)
Q Consensus        53 ~~~~gG~--~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g-~~~~ad~VV~a~p~~~~  120 (343)
                      .+|.+|.  ...++++|.+.+++ |++|+.+++|++|..++  +++ .|.+++ ..++||.||+|++.+..
T Consensus       398 ~~p~~G~v~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~--~~~-~v~t~~g~~~~ad~VV~A~G~~s~  464 (662)
T PRK01747        398 FYPQGGWLCPAELCRALLALAGQ-QLTIHFGHEVARLERED--DGW-QLDFAGGTLASAPVVVLANGHDAA  464 (662)
T ss_pred             EeCCCCeeCHHHHHHHHHHhccc-CcEEEeCCEeeEEEEeC--CEE-EEEECCCcEEECCEEEECCCCCcc
Confidence            3455552  24688999999888 99999999999998876  554 477764 45789999999999764

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=97.66  E-value=0.0066  Score=56.86  Aligned_cols=205  Identities=15%  Similarity=0.081  Sum_probs=105.8

Q ss_pred             hhhHHHHHHHHHcC-CeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhhHHHhhhhhcccCchhHHhhcc
Q 019274           62 KIFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLN  140 (343)
Q Consensus        62 ~l~~~l~~~l~~~G-~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~~~~Ll~~~~~~~~~~~~~~~~  140 (343)
                      .++++|++.+++.| ..+..+++|..+..++   +++.|.+.+.++.||+||+|++++.-. +.....         ...
T Consensus       157 ~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~---~~~~v~t~~g~i~a~~vv~a~G~~~~~-l~~~~~---------~~~  223 (387)
T COG0665         157 LLTRALAAAAEELGVVIIEGGTPVTSLERDG---RVVGVETDGGTIEADKVVLAAGAWAGE-LAATLG---------ELP  223 (387)
T ss_pred             HHHHHHHHHHHhcCCeEEEccceEEEEEecC---cEEEEEeCCccEEeCEEEEcCchHHHH-HHHhcC---------CCc
Confidence            58899999999999 5667799999998751   347788886669999999999998754 221110         000


Q ss_pred             CcccceEEEEEEeccCCCCCCCcc--eeecCCCCccceEeeccccccccCCCCCeEE-EEEeeCC-CCCCCCCHHH-HHH
Q 019274          141 LASIDVVSVKLWFDKKVTVPNVSN--ACSGFGDSLAWTFFDLNKIYDEHKDDSATVI-QADFYHA-NELMPLKDDQ-VVA  215 (343)
Q Consensus       141 l~~~~~~~v~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i-~~~~~~~-~~~~~~~~~e-~~~  215 (343)
                      +...++....+.++..........  ...... .. ..++-     +.   .++.++ ....... ..-.+...++ ...
T Consensus       224 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~y~~-----~~---~~g~~~~g~~~~~~~~~~~~~~~~~~~~~  293 (387)
T COG0665         224 LPLRPVRGQALTTEPPEGLLADGLAPVVLVVD-DG-GGYIR-----PR---GDGRLRVGGTDEEGGDDPSDPEREDLVIA  293 (387)
T ss_pred             CccccccceEEEecCCCccccccccceEEEec-CC-ceEEE-----Ec---CCCcEEEeecccccCCCCccccCcchhHH
Confidence            111111111121222111000000  000000 00 00110     10   122222 2211111 0111111222 577


Q ss_pred             HHHHHHhhhcccCCCCceeeeEEEecCCCccccCCCCCCCCCCCCCCCCCeEEeeccccCCCCCccchHHHHHHHHHHHH
Q 019274          216 KAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANR  295 (343)
Q Consensus       216 ~~~~~L~~~~p~~~~~~~~~~~~~r~~~~~~~~~~g~~~~~p~~~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~  295 (343)
                      .+++.+.+++|.+....+..    .|....+..+|+..+..-.. .+.+|+|++..+.  ++|   +.-+...|+.+|+.
T Consensus       294 ~l~~~~~~~~P~l~~~~~~~----~w~g~~~~t~pd~~P~iG~~-~~~~~l~~a~G~~--~~G---~~~~p~~g~~lA~l  363 (387)
T COG0665         294 ELLRVARALLPGLADAGIEA----AWAGLRPPTTPDGLPVIGRA-APLPNLYVATGHG--GHG---FTLAPALGRLLADL  363 (387)
T ss_pred             HHHHHHHHhCccccccccce----eeeccccCCCCCCCceeCCC-CCCCCEEEEecCC--CcC---hhhccHHHHHHHHH
Confidence            89999999999987533322    25443332334443221111 2378999997763  343   34478899999999


Q ss_pred             HHHH
Q 019274          296 VVDY  299 (343)
Q Consensus       296 il~~  299 (343)
                      |+..
T Consensus       364 i~g~  367 (387)
T COG0665         364 ILGG  367 (387)
T ss_pred             HcCC
Confidence            9874

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=97.52  E-value=0.038  Score=54.49  Aligned_cols=58  Identities=22%  Similarity=0.195  Sum_probs=48.8

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE----CC--eEEecCEEEEeeChhhH
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GK--ETYSAGAVVLAVGISTL  120 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~----~g--~~~~ad~VV~a~p~~~~  120 (343)
                      ..++.++++.+.++|++|+.+++|++|..++  +++++|++    .+  .+++||.||.|++++.-
T Consensus       149 ~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~--~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~  212 (546)
T PRK11101        149 FRLTAANMLDAKEHGAQILTYHEVTGLIREG--DTVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQ  212 (546)
T ss_pred             HHHHHHHHHHHHhCCCEEEeccEEEEEEEcC--CeEEEEEEEEcCCCcEEEEECCEEEECCChhHH
Confidence            4577788888899999999999999999887  77888875    23  47899999999999864

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=97.49  E-value=0.00034  Score=65.89  Aligned_cols=67  Identities=21%  Similarity=0.276  Sum_probs=49.3

Q ss_pred             eeEeecCCCchhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE-CCeEEecCEEEEeeChhh
Q 019274           51 DLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST  119 (343)
Q Consensus        51 ~~~~~~gG~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~-~g~~~~ad~VV~a~p~~~  119 (343)
                      ...||...-...+++.|.+.+++.|++|+++++|++|..++  +++..|.+ +++++.||+||+|++..+
T Consensus        99 gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~--~~~f~v~~~~~~~~~a~~vILAtGG~S  166 (409)
T PF03486_consen   99 GRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKE--DGVFGVKTKNGGEYEADAVILATGGKS  166 (409)
T ss_dssp             TEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEET--TEEEEEEETTTEEEEESEEEE----SS
T ss_pred             CEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecC--CceeEeeccCcccccCCEEEEecCCCC
Confidence            35678765578899999999999999999999999999887  56788999 678999999999998643

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>PRK10015 oxidoreductase; Provisional

Probab=97.39  E-value=0.044  Score=52.27  Aligned_cols=56  Identities=23%  Similarity=0.439  Sum_probs=46.1

Q ss_pred             hhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhhH
Q 019274           63 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL  120 (343)
Q Consensus        63 l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~~  120 (343)
                      +-+.|.+.+++.|++|+.+++|++|..++  +++.+|.+++.+++||.||.|.+....
T Consensus       110 fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~--~~v~~v~~~~~~i~A~~VI~AdG~~s~  165 (429)
T PRK10015        110 LDPWLMEQAEQAGAQFIPGVRVDALVREG--NKVTGVQAGDDILEANVVILADGVNSM  165 (429)
T ss_pred             HHHHHHHHHHHcCCEEECCcEEEEEEEeC--CEEEEEEeCCeEEECCEEEEccCcchh
Confidence            33457788888899999999999998776  677777777778999999999998653

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=97.31  E-value=0.061  Score=53.86  Aligned_cols=59  Identities=20%  Similarity=0.100  Sum_probs=48.5

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecC-CCCeEEEEEE----CCe--EEecCEEEEeeChhhH
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDE-ERCCISDVVC----GKE--TYSAGAVVLAVGISTL  120 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~-~~g~v~~V~~----~g~--~~~ad~VV~a~p~~~~  120 (343)
                      ..++.+|++.++++|++|+.+++|++|..++ + |++++|++    +++  ++.||.||.|++++.-
T Consensus       232 ~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~-g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~  297 (627)
T PLN02464        232 SRLNVALACTAALAGAAVLNYAEVVSLIKDEST-GRIVGARVRDNLTGKEFDVYAKVVVNAAGPFCD  297 (627)
T ss_pred             HHHHHHHHHHHHhCCcEEEeccEEEEEEEecCC-CcEEEEEEEECCCCcEEEEEeCEEEECCCHhHH
Confidence            4688899999999999999999999998763 2 67777765    243  5799999999999863

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=97.30  E-value=0.08  Score=49.94  Aligned_cols=57  Identities=23%  Similarity=0.335  Sum_probs=46.0

Q ss_pred             hhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhhH
Q 019274           63 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL  120 (343)
Q Consensus        63 l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~~  120 (343)
                      +-+-|++.+++.|++++.+++|+.+..+++ +.+.++..++.+++|+.||.|.++...
T Consensus        97 fd~~La~~A~~aGae~~~~~~~~~~~~~~~-~~~~~~~~~~~e~~a~~vI~AdG~~s~  153 (396)
T COG0644          97 FDKWLAERAEEAGAELYPGTRVTGVIREDD-GVVVGVRAGDDEVRAKVVIDADGVNSA  153 (396)
T ss_pred             hhHHHHHHHHHcCCEEEeceEEEEEEEeCC-cEEEEEEcCCEEEEcCEEEECCCcchH
Confidence            556688889999999999999999999884 544444444568999999999998764

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=97.25  E-value=0.064  Score=51.84  Aligned_cols=57  Identities=23%  Similarity=0.173  Sum_probs=48.7

Q ss_pred             hhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC----Ce--EEecCEEEEeeChhhHH
Q 019274           62 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG----KE--TYSAGAVVLAVGISTLQ  121 (343)
Q Consensus        62 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~----g~--~~~ad~VV~a~p~~~~~  121 (343)
                      +|+-..+..+.++|++|+..++|+++..++  | |++|++.    |+  +++|+.||-|++||.-.
T Consensus       165 RLv~~~a~~A~~~Ga~il~~~~v~~~~re~--~-v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~  227 (532)
T COG0578         165 RLVAANARDAAEHGAEILTYTRVESLRREG--G-VWGVEVEDRETGETYEIRARAVVNAAGPWVDE  227 (532)
T ss_pred             HHHHHHHHHHHhcccchhhcceeeeeeecC--C-EEEEEEEecCCCcEEEEEcCEEEECCCccHHH
Confidence            466777778889999999999999999998  7 8999875    33  57999999999999864

>PRK06847 hypothetical protein; Provisional

Probab=97.19  E-value=0.052  Score=50.63  Aligned_cols=56  Identities=23%  Similarity=0.176  Sum_probs=45.8

Q ss_pred             hhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhH
Q 019274           62 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTL  120 (343)
Q Consensus        62 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~  120 (343)
                      .+.+.|.+.+++.|++|+++++|++|..++  +.+ .|.+. |+++++|.||.|.+....
T Consensus       108 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~~-~v~~~~g~~~~ad~vI~AdG~~s~  164 (375)
T PRK06847        108 ALARILADAARAAGADVRLGTTVTAIEQDD--DGV-TVTFSDGTTGRYDLVVGADGLYSK  164 (375)
T ss_pred             HHHHHHHHHHHHhCCEEEeCCEEEEEEEcC--CEE-EEEEcCCCEEEcCEEEECcCCCcc
Confidence            467888888888899999999999998776  444 45554 678999999999998764

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=97.16  E-value=0.0015  Score=61.35  Aligned_cols=64  Identities=19%  Similarity=0.194  Sum_probs=53.8

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECC---eEEecCEEEEeeChhhHHHhhhh
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGK---ETYSAGAVVLAVGISTLQELIKN  126 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g---~~~~ad~VV~a~p~~~~~~Ll~~  126 (343)
                      ..|.++|.+.+++.|++++.+++|.++..++  +++++|.+++   ..++||+||+|++++-...|+..
T Consensus       263 ~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~--~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~gL~a~  329 (419)
T TIGR03378       263 IRLEEALKHRFEQLGGVMLPGDRVLRAEFEG--NRVTRIHTRNHRDIPLRADHFVLASGSFFSNGLVAE  329 (419)
T ss_pred             HHHHHHHHHHHHHCCCEEEECcEEEEEEeeC--CeEEEEEecCCccceEECCEEEEccCCCcCHHHHhh
Confidence            4699999999999999999999999999888  7788888663   38999999999999855445443

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PRK06185 hypothetical protein; Provisional

Probab=97.12  E-value=0.047  Score=51.59  Aligned_cols=57  Identities=18%  Similarity=0.123  Sum_probs=44.5

Q ss_pred             hhhHHHHHHHHHc-CCeEEcceeeeEEEecCCCCeEEEEEEC---C-eEEecCEEEEeeChhhH
Q 019274           62 KIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCG---K-ETYSAGAVVLAVGISTL  120 (343)
Q Consensus        62 ~l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~~g~v~~V~~~---g-~~~~ad~VV~a~p~~~~  120 (343)
                      .+.+.|.+.+.+. |++++.+++|+++..++  +++++|++.   | .+++||.||.|.+.+..
T Consensus       109 ~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~--~~v~~v~~~~~~g~~~i~a~~vI~AdG~~S~  170 (407)
T PRK06185        109 DFLDFLAEEASAYPNFTLRMGAEVTGLIEEG--GRVTGVRARTPDGPGEIRADLVVGADGRHSR  170 (407)
T ss_pred             HHHHHHHHHHhhCCCcEEEeCCEEEEEEEeC--CEEEEEEEEcCCCcEEEEeCEEEECCCCchH
Confidence            3667777777664 88999999999999877  666666542   4 37899999999998764

>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]

Probab=97.08  E-value=0.022  Score=55.57  Aligned_cols=96  Identities=13%  Similarity=0.044  Sum_probs=65.8

Q ss_pred             hhhcCCcccccHHHHHHHHHHHHHhcCCCceeEeecCCC--chhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEE
Q 019274           21 VGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTL--REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISD   98 (343)
Q Consensus        21 ~~~~~~~~~~sa~~~~~~l~~~~~~~~~~~~~~~~~gG~--~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~   98 (343)
                      ..++...+-+|.......+-...+..- -..+..|..|.  ...++++|+..+++.|+.|..+++|++|+...  +++++
T Consensus       146 ~a~g~e~~lLsPee~~~~~pLLn~d~v-~g~Ly~P~DG~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~--~~~~g  222 (856)
T KOG2844|consen  146 KAHGVESELLSPEETQELFPLLNVDDV-YGGLYSPGDGVMDPAGLCQALARAASALGALVIENCPVTGLHVET--DKFGG  222 (856)
T ss_pred             hhccceeeecCHHHHHHhCcccchhHh-eeeeecCCCcccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeec--CCccc
Confidence            445555556665544433322110100 01122344332  25689999999999999999999999999987  45679


Q ss_pred             EEECCeEEecCEEEEeeChhh
Q 019274           99 VVCGKETYSAGAVVLAVGIST  119 (343)
Q Consensus        99 V~~~g~~~~ad~VV~a~p~~~  119 (343)
                      |++.-+.+++.+||-|++.|.
T Consensus       223 VeT~~G~iet~~~VNaaGvWA  243 (856)
T KOG2844|consen  223 VETPHGSIETECVVNAAGVWA  243 (856)
T ss_pred             eeccCcceecceEEechhHHH
Confidence            999866899999999999987

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=97.03  E-value=0.002  Score=59.98  Aligned_cols=57  Identities=25%  Similarity=0.203  Sum_probs=48.9

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhh
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST  119 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~  119 (343)
                      ..+++.|.++|++.|++|+++|.|.+|+.++  +.+..|.+. |+++.+|+||+|++-..
T Consensus       173 ~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~--~~~~~v~~~~g~~i~~~~vvlA~Grsg  230 (486)
T COG2509         173 PKVVKNIREYLESLGGEIRFNTEVEDIEIED--NEVLGVKLTKGEEIEADYVVLAPGRSG  230 (486)
T ss_pred             HHHHHHHHHHHHhcCcEEEeeeEEEEEEecC--CceEEEEccCCcEEecCEEEEccCcch
Confidence            3477888899999999999999999999988  556677776 67999999999998643

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=96.95  E-value=0.089  Score=49.48  Aligned_cols=56  Identities=13%  Similarity=0.143  Sum_probs=46.4

Q ss_pred             hhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhH
Q 019274           62 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTL  120 (343)
Q Consensus        62 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~  120 (343)
                      .|.+.|.+.+++.|++|+.+++|+++..++  +.+ .|+++ |++++||.||.|.+....
T Consensus       114 ~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~--~~v-~v~~~~g~~~~a~~vV~AdG~~S~  170 (392)
T PRK08773        114 LLVDRLWAALHAAGVQLHCPARVVALEQDA--DRV-RLRLDDGRRLEAALAIAADGAAST  170 (392)
T ss_pred             HHHHHHHHHHHhCCCEEEcCCeEEEEEecC--CeE-EEEECCCCEEEeCEEEEecCCCch
Confidence            477888888888999999999999998876  444 46665 668999999999998763

>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family

Probab=96.84  E-value=0.0047  Score=57.45  Aligned_cols=64  Identities=20%  Similarity=0.310  Sum_probs=52.2

Q ss_pred             eeEeecCCCchhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC--CeEEecCEEEEeeChhh
Q 019274           51 DLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KETYSAGAVVLAVGIST  119 (343)
Q Consensus        51 ~~~~~~gG~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~--g~~~~ad~VV~a~p~~~  119 (343)
                      ...||...-+..++++|.+.+++.|++|+++++|++|  ++  ++ +.|.+.  ++.++||+||+|++...
T Consensus        76 grvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~--~~-~~v~~~~~~~~~~a~~vIlAtGG~s  141 (376)
T TIGR03862        76 GRVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QG--GT-LRFETPDGQSTIEADAVVLALGGAS  141 (376)
T ss_pred             CEECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eC--Cc-EEEEECCCceEEecCEEEEcCCCcc
Confidence            3568876667889999999999999999999999999  33  33 567764  35799999999999754

This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=96.82  E-value=0.39  Score=46.96  Aligned_cols=57  Identities=23%  Similarity=0.119  Sum_probs=45.3

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC----C--eEEecCEEEEeeChhhH
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG----K--ETYSAGAVVLAVGISTL  120 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~----g--~~~~ad~VV~a~p~~~~  120 (343)
                      ..++..+++.++++|++|+.+++|++|..++  +. ++|++.    |  .+++|+.||.|++++.-
T Consensus       155 ~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~--~~-~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~  217 (508)
T PRK12266        155 ARLVVLNARDAAERGAEILTRTRVVSARREN--GL-WHVTLEDTATGKRYTVRARALVNAAGPWVK  217 (508)
T ss_pred             HHHHHHHHHHHHHcCCEEEcCcEEEEEEEeC--CE-EEEEEEEcCCCCEEEEEcCEEEECCCccHH
Confidence            3566788888889999999999999998776  54 455542    3  26899999999999764

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=96.82  E-value=0.0036  Score=57.50  Aligned_cols=64  Identities=16%  Similarity=0.218  Sum_probs=53.0

Q ss_pred             eeEeec-CCCchhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECC-eEEecCEEEEeeChh
Q 019274           51 DLVWCR-GTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGK-ETYSAGAVVLAVGIS  118 (343)
Q Consensus        51 ~~~~~~-gG~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g-~~~~ad~VV~a~p~~  118 (343)
                      ...||. .. ++.|+++|.+.+++.|++|+++++|.+|..++  .. ..+.+.+ ++++||.+|+|++..
T Consensus       101 Gr~Fp~sdk-A~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~--~~-f~l~t~~g~~i~~d~lilAtGG~  166 (408)
T COG2081         101 GRMFPDSDK-ASPIVDALLKELEALGVTIRTRSRVSSVEKDD--SG-FRLDTSSGETVKCDSLILATGGK  166 (408)
T ss_pred             ceecCCccc-hHHHHHHHHHHHHHcCcEEEecceEEeEEecC--ce-EEEEcCCCCEEEccEEEEecCCc
Confidence            345777 44 67899999999999999999999999999887  32 4577764 589999999999843

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=96.80  E-value=0.0051  Score=58.74  Aligned_cols=64  Identities=19%  Similarity=0.187  Sum_probs=51.4

Q ss_pred             eecCCCchhhhHHHHHHHHHcCCeEEcceeeeEEEecC-CCCeEEEEEEC--CeEEecCEEEEeeChhh
Q 019274           54 WCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDE-ERCCISDVVCG--KETYSAGAVVLAVGIST  119 (343)
Q Consensus        54 ~~~gG~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~-~~g~v~~V~~~--g~~~~ad~VV~a~p~~~  119 (343)
                      ++.++ +..+++.|.+.+++.|++|+++++|++|..++ + ++|.+|...  +.++.|+.||+|++...
T Consensus       117 ~~~~~-g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~-g~v~gv~~~~~~~~i~ak~VIlAtGG~~  183 (432)
T TIGR02485       117 FLRGG-GKALTNALYSSAERLGVEIRYGIAVDRIPPEAFD-GAHDGPLTTVGTHRITTQALVLAAGGLG  183 (432)
T ss_pred             eecCC-HHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCC-CeEEEEEEcCCcEEEEcCEEEEcCCCcc
Confidence            34444 45699999999999999999999999998762 3 778887764  34789999999999653

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=96.75  E-value=0.0047  Score=59.82  Aligned_cols=59  Identities=15%  Similarity=0.140  Sum_probs=49.8

Q ss_pred             hhhhHHHHHHHHH----cC--CeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhhHH
Q 019274           61 EKIFEPWMDSMRT----RG--CEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQ  121 (343)
Q Consensus        61 ~~l~~~l~~~l~~----~G--~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~~~  121 (343)
                      ..++++|.+.+++    .|  ++|+++++|++|..++  +.++.|.+++++++||.||+|+++++..
T Consensus       211 ~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~--~~~~~V~T~~G~i~A~~VVvaAG~~S~~  275 (497)
T PTZ00383        211 QKLSESFVKHARRDALVPGKKISINLNTEVLNIERSN--DSLYKIHTNRGEIRARFVVVSACGYSLL  275 (497)
T ss_pred             HHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecC--CCeEEEEECCCEEEeCEEEECcChhHHH
Confidence            4588999999988    78  6789999999999876  4457788886689999999999998753

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=96.65  E-value=0.2  Score=47.25  Aligned_cols=56  Identities=18%  Similarity=0.204  Sum_probs=46.1

Q ss_pred             hhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhH
Q 019274           62 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTL  120 (343)
Q Consensus        62 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~  120 (343)
                      .+.+.|.+.+++.|++|+.+++|++|..++  +.+ .|++. |++++||.||.|.+....
T Consensus       112 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~v-~v~~~~g~~~~ad~vI~AdG~~S~  168 (403)
T PRK07333        112 VLINALRKRAEALGIDLREATSVTDFETRD--EGV-TVTLSDGSVLEARLLVAADGARSK  168 (403)
T ss_pred             HHHHHHHHHHHhCCCEEEcCCEEEEEEEcC--CEE-EEEECCCCEEEeCEEEEcCCCChH
Confidence            478888888888899999999999998776  444 46654 668999999999998654

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=96.56  E-value=0.2  Score=46.77  Aligned_cols=56  Identities=11%  Similarity=0.152  Sum_probs=45.1

Q ss_pred             hhhHHHHHHHHH-cCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhH
Q 019274           62 KIFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTL  120 (343)
Q Consensus        62 ~l~~~l~~~l~~-~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~  120 (343)
                      .+.+.|.+.+.+ .|++++.+++|++|..++  +.+ .|.+. |++++||.||.|.+.+..
T Consensus       106 ~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~--~~~-~v~~~~g~~~~ad~vV~AdG~~S~  163 (382)
T TIGR01984       106 DLGQALLSRLALLTNIQLYCPARYKEIIRNQ--DYV-RVTLDNGQQLRAKLLIAADGANSK  163 (382)
T ss_pred             HHHHHHHHHHHhCCCcEEEcCCeEEEEEEcC--CeE-EEEECCCCEEEeeEEEEecCCChH
Confidence            477888888887 499999999999998776  444 46555 568999999999998763

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=96.52  E-value=0.0093  Score=57.56  Aligned_cols=58  Identities=26%  Similarity=0.220  Sum_probs=49.0

Q ss_pred             chhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC---C--eEEecCEEEEeeChhh
Q 019274           60 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG---K--ETYSAGAVVLAVGIST  119 (343)
Q Consensus        60 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~---g--~~~~ad~VV~a~p~~~  119 (343)
                      +..+++.|.+.+++.|++|+++++|++|..++  ++|++|++.   +  ..+.|+.||+|++...
T Consensus       130 g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~--g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~~  192 (466)
T PRK08274        130 GKALVNALYRSAERLGVEIRYDAPVTALELDD--GRFVGARAGSAAGGAERIRAKAVVLAAGGFE  192 (466)
T ss_pred             HHHHHHHHHHHHHHCCCEEEcCCEEEEEEecC--CeEEEEEEEccCCceEEEECCEEEECCCCCC
Confidence            35689999999999999999999999999876  788888763   2  3679999999998654

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=96.50  E-value=0.72  Score=45.00  Aligned_cols=57  Identities=19%  Similarity=0.058  Sum_probs=45.3

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC---C--eEEecCEEEEeeChhhH
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG---K--ETYSAGAVVLAVGISTL  120 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~---g--~~~~ad~VV~a~p~~~~  120 (343)
                      ..++..++..++++|++++.+++|++|..++  +. +.|++.   |  .+++|+.||.|++++.-
T Consensus       155 ~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~--~~-~~v~~~~~~g~~~~i~a~~VVnAaG~wa~  216 (502)
T PRK13369        155 ARLVVLNALDAAERGATILTRTRCVSARREG--GL-WRVETRDADGETRTVRARALVNAAGPWVT  216 (502)
T ss_pred             HHHHHHHHHHHHHCCCEEecCcEEEEEEEcC--CE-EEEEEEeCCCCEEEEEecEEEECCCccHH
Confidence            3566778888899999999999999998876  53 456553   2  25899999999999864

>KOG2852 consensus Possible oxidoreductase [General function prediction only]

Probab=96.49  E-value=0.087  Score=46.46  Aligned_cols=62  Identities=16%  Similarity=0.169  Sum_probs=45.2

Q ss_pred             hhhhHHHHHHHHHcC-CeEEcceeeeEEEecCCCCeEEEEEEC---C--eEEecCEEEEeeChhhHHHhhhh
Q 019274           61 EKIFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVCG---K--ETYSAGAVVLAVGISTLQELIKN  126 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G-~~i~~~~~V~~I~~~~~~g~v~~V~~~---g--~~~~ad~VV~a~p~~~~~~Ll~~  126 (343)
                      ..+.+.|.+.+++.| +++.++ .|.++..+.  +|+.+|..+   +  ...+++++|++++||+-. |++.
T Consensus       147 ~lFc~~i~sea~k~~~V~lv~G-kv~ev~dEk--~r~n~v~~ae~~~ti~~~d~~~ivvsaGPWTsk-llp~  214 (380)
T KOG2852|consen  147 YLFCHFILSEAEKRGGVKLVFG-KVKEVSDEK--HRINSVPKAEAEDTIIKADVHKIVVSAGPWTSK-LLPF  214 (380)
T ss_pred             HHHHHHHHHHHHhhcCeEEEEe-eeEEeeccc--ccccccchhhhcCceEEeeeeEEEEecCCCchh-hccc
Confidence            458888998888887 788888 788887444  676666544   2  345788999999999875 4443

>PRK07045 putative monooxygenase; Reviewed

Probab=96.46  E-value=0.63  Score=43.63  Aligned_cols=59  Identities=10%  Similarity=0.103  Sum_probs=45.8

Q ss_pred             hhhHHHHHHHHH-cCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhHH
Q 019274           62 KIFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQ  121 (343)
Q Consensus        62 ~l~~~l~~~l~~-~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~~  121 (343)
                      .|.+.|.+.+.. .|++++++++|++|..+++ +.++.|+.+ |+++++|.||.|-+..+..
T Consensus       107 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~-~~~~~v~~~~g~~~~~~~vIgADG~~S~v  167 (388)
T PRK07045        107 QLRRLLLAKLDGLPNVRLRFETSIERIERDAD-GTVTSVTLSDGERVAPTVLVGADGARSMI  167 (388)
T ss_pred             HHHHHHHHHHhcCCCeeEEeCCEEEEEEECCC-CcEEEEEeCCCCEEECCEEEECCCCChHH
Confidence            356667777654 4789999999999998764 545567775 6789999999999998743

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=96.41  E-value=0.16  Score=46.53  Aligned_cols=62  Identities=26%  Similarity=0.275  Sum_probs=44.8

Q ss_pred             hhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE-C--C--eEEecCEEEEeeChhhH-HHhhh
Q 019274           62 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-G--K--ETYSAGAVVLAVGISTL-QELIK  125 (343)
Q Consensus        62 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~-~--g--~~~~ad~VV~a~p~~~~-~~Ll~  125 (343)
                      .|-+.|.+.+++.|++|+.+++|+.+..++  +.+..+.. .  |  .+++||.||-|-+..+. .+.+.
T Consensus       112 ~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~--~~~~~~~~~~~~g~~~~i~adlvVgADG~~S~vR~~l~  179 (356)
T PF01494_consen  112 ELDRALREEAEERGVDIRFGTRVVSIEQDD--DGVTVVVRDGEDGEEETIEADLVVGADGAHSKVRKQLG  179 (356)
T ss_dssp             HHHHHHHHHHHHHTEEEEESEEEEEEEEET--TEEEEEEEETCTCEEEEEEESEEEE-SGTT-HHHHHTT
T ss_pred             HHHHhhhhhhhhhhhhheeeeecccccccc--cccccccccccCCceeEEEEeeeecccCcccchhhhcc
Confidence            467788888889999999999999998877  44433322 2  3  26899999999999874 44443

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=96.40  E-value=0.24  Score=46.19  Aligned_cols=56  Identities=13%  Similarity=0.123  Sum_probs=45.5

Q ss_pred             hhhHHHHHHHHHcC-CeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhH
Q 019274           62 KIFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTL  120 (343)
Q Consensus        62 ~l~~~l~~~l~~~G-~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~  120 (343)
                      .+.+.|.+.+++.| ++|+.+++|++|..++  +.+ .|++. |+++++|.||.|.+....
T Consensus       107 ~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~--~~~-~v~~~~g~~~~~~~vi~adG~~S~  164 (385)
T TIGR01988       107 VLQQALWERLQEYPNVTLLCPARVVELPRHS--DHV-ELTLDDGQQLRARLLVGADGANSK  164 (385)
T ss_pred             HHHHHHHHHHHhCCCcEEecCCeEEEEEecC--Cee-EEEECCCCEEEeeEEEEeCCCCCH
Confidence            47788888888888 9999999999998876  544 46664 668999999999888764

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PRK07190 hypothetical protein; Provisional

Probab=96.39  E-value=1  Score=43.76  Aligned_cols=56  Identities=13%  Similarity=0.114  Sum_probs=43.7

Q ss_pred             hhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE-CCeEEecCEEEEeeChhhHH
Q 019274           63 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQ  121 (343)
Q Consensus        63 l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~-~g~~~~ad~VV~a~p~~~~~  121 (343)
                      +-+.|.+.+++.|++|+.+++|++|..++  +.+. +.+ +|++++|+.||.|.+..+..
T Consensus       111 le~~L~~~~~~~Gv~v~~~~~v~~l~~~~--~~v~-v~~~~g~~v~a~~vVgADG~~S~v  167 (487)
T PRK07190        111 VEKLLDDKLKEAGAAVKRNTSVVNIELNQ--AGCL-TTLSNGERIQSRYVIGADGSRSFV  167 (487)
T ss_pred             HHHHHHHHHHHCCCEEEeCCEEEEEEEcC--CeeE-EEECCCcEEEeCEEEECCCCCHHH
Confidence            44556667888899999999999999877  3443 344 36689999999999997753

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=96.39  E-value=0.27  Score=46.19  Aligned_cols=62  Identities=18%  Similarity=0.159  Sum_probs=49.3

Q ss_pred             hhhhHHHHHHHHHcC-CeEEcceeeeEEEecCCCCeEEEEEEC--CeEEecCEEEEeeChhhHH-Hhhh
Q 019274           61 EKIFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVCG--KETYSAGAVVLAVGISTLQ-ELIK  125 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G-~~i~~~~~V~~I~~~~~~g~v~~V~~~--g~~~~ad~VV~a~p~~~~~-~Ll~  125 (343)
                      ..|.+.|.+.+.+.+ ++++.+++|+.+..++  +.|. +++.  |++++||.||-|=+.++.. +.+.
T Consensus       104 ~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~--~~v~-v~l~~dG~~~~a~llVgADG~~S~vR~~~~  169 (387)
T COG0654         104 SDLLNALLEAARALPNVTLRFGAEVEAVEQDG--DGVT-VTLSFDGETLDADLLVGADGANSAVRRAAG  169 (387)
T ss_pred             HHHHHHHHHHHhhCCCcEEEcCceEEEEEEcC--CceE-EEEcCCCcEEecCEEEECCCCchHHHHhcC
Confidence            357889999998877 7999999999999988  4555 5554  6789999999999987754 4444

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=96.38  E-value=0.37  Score=45.46  Aligned_cols=60  Identities=13%  Similarity=0.125  Sum_probs=47.2

Q ss_pred             hhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhH-HHhh
Q 019274           62 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTL-QELI  124 (343)
Q Consensus        62 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~-~~Ll  124 (343)
                      .+.+.|.+.+++.|++|+.+++|++|..++  +.+ .|++. |++++||.||.|.+.++. .+++
T Consensus       113 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~v-~v~~~~g~~~~a~~vVgAdG~~S~vR~~l  174 (405)
T PRK05714        113 VVQDALLERLHDSDIGLLANARLEQMRRSG--DDW-LLTLADGRQLRAPLVVAADGANSAVRRLA  174 (405)
T ss_pred             HHHHHHHHHHhcCCCEEEcCCEEEEEEEcC--CeE-EEEECCCCEEEeCEEEEecCCCchhHHhc
Confidence            356788888888899999999999998776  444 46655 568999999999999774 3444

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=96.36  E-value=0.012  Score=55.55  Aligned_cols=59  Identities=15%  Similarity=0.137  Sum_probs=48.9

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeE-EecCEEEEeeChhhHH
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KET-YSAGAVVLAVGISTLQ  121 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~-~~ad~VV~a~p~~~~~  121 (343)
                      ..++.+|++.++++|++|++|++|+.|+..++ | ++.+.+. |++ ++|+.||.+.+.....
T Consensus       153 ~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~d-g-~~~~~~~~g~~~~~ak~Vin~AGl~Ad~  213 (429)
T COG0579         153 GELTRALAEEAQANGVELRLNTEVTGIEKQSD-G-VFVLNTSNGEETLEAKFVINAAGLYADP  213 (429)
T ss_pred             HHHHHHHHHHHHHcCCEEEecCeeeEEEEeCC-c-eEEEEecCCcEEEEeeEEEECCchhHHH
Confidence            45889999999999999999999999999885 4 5555555 544 9999999999987653

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=96.35  E-value=0.0086  Score=50.57  Aligned_cols=57  Identities=25%  Similarity=0.174  Sum_probs=43.1

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECC-eEEecCEEEEeeChhhH
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGK-ETYSAGAVVLAVGISTL  120 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g-~~~~ad~VV~a~p~~~~  120 (343)
                      +.+.+.|.+.+++.|.+|+++++|+++..++  ++ |.|++.. .+++||+||+|++....
T Consensus        82 ~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~--~~-w~v~~~~~~~~~a~~VVlAtG~~~~  139 (203)
T PF13738_consen   82 EEVLDYLQEYAERFGLEIRFNTRVESVRRDG--DG-WTVTTRDGRTIRADRVVLATGHYSH  139 (203)
T ss_dssp             HHHHHHHHHHHHHTTGGEETS--EEEEEEET--TT-EEEEETTS-EEEEEEEEE---SSCS
T ss_pred             HHHHHHHHHHHhhcCcccccCCEEEEEEEec--cE-EEEEEEecceeeeeeEEEeeeccCC
Confidence            3478899999999999999999999999987  44 7888885 58999999999996433

...

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=96.27  E-value=0.012  Score=55.78  Aligned_cols=59  Identities=27%  Similarity=0.309  Sum_probs=47.7

Q ss_pred             chhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC----Ce--EEecCEEEEeeChhhH
Q 019274           60 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG----KE--TYSAGAVVLAVGISTL  120 (343)
Q Consensus        60 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~----g~--~~~ad~VV~a~p~~~~  120 (343)
                      ...+++.|.+.++++|++|+++++|++|..++  ++|++|...    ++  ++.|+.||+|++....
T Consensus       140 g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~--g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~  204 (417)
T PF00890_consen  140 GKALIEALAKAAEEAGVDIRFNTRVTDLITED--GRVTGVVAENPADGEFVRIKAKAVILATGGFGG  204 (417)
T ss_dssp             HHHHHHHHHHHHHHTTEEEEESEEEEEEEEET--TEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred             HHHHHHHHHHHHhhcCeeeeccceeeeEEEeC--CceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence            35689999999999999999999999999987  899998775    33  5789999999988664

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=96.19  E-value=0.016  Score=54.60  Aligned_cols=56  Identities=20%  Similarity=0.255  Sum_probs=48.0

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhh
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST  119 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~  119 (343)
                      ..++++|.+.+++.|++|+++++|.+|..++  +.+ .|.+++++++||.||+|++.+.
T Consensus       149 ~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~--~~~-~V~~~~g~i~ad~vV~A~G~~s  204 (393)
T PRK11728        149 RAVAEAMAELIQARGGEIRLGAEVTALDEHA--NGV-VVRTTQGEYEARTLINCAGLMS  204 (393)
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEecC--CeE-EEEECCCEEEeCEEEECCCcch
Confidence            5688999999999999999999999998776  544 5777766899999999999875

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=96.16  E-value=0.017  Score=57.38  Aligned_cols=58  Identities=16%  Similarity=0.216  Sum_probs=49.0

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC--Ce--EEec-CEEEEeeChhhH
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KE--TYSA-GAVVLAVGISTL  120 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~--g~--~~~a-d~VV~a~p~~~~  120 (343)
                      ..|+++|.+.+++.|++|+++++|++|..++  |+|++|+..  ++  +++| +.||+|++.+.-
T Consensus       217 ~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~~--g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~~  279 (581)
T PRK06134        217 NALVARLLKSAEDLGVRIWESAPARELLRED--GRVAGAVVETPGGLQEIRARKGVVLAAGGFPH  279 (581)
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEEeC--CEEEEEEEEECCcEEEEEeCCEEEEcCCCccc
Confidence            4588999999999999999999999998876  888888663  33  5788 999999998763

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=96.06  E-value=0.31  Score=45.69  Aligned_cols=56  Identities=18%  Similarity=-0.038  Sum_probs=43.9

Q ss_pred             hhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhH
Q 019274           62 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTL  120 (343)
Q Consensus        62 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~  120 (343)
                      .+.+.|.+.+.+.++..+.+++|+++..++  +.+ .|++. +++++||.||.|.+....
T Consensus       112 ~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~--~~~-~v~~~~g~~~~a~~vI~AdG~~S~  168 (388)
T PRK07494        112 LLNRALEARVAELPNITRFGDEAESVRPRE--DEV-TVTLADGTTLSARLVVGADGRNSP  168 (388)
T ss_pred             HHHHHHHHHHhcCCCcEEECCeeEEEEEcC--CeE-EEEECCCCEEEEeEEEEecCCCch
Confidence            467888888887776569999999998876  444 46665 568999999999998764

>TIGR00275 flavoprotein, HI0933 family

Probab=96.03  E-value=0.026  Score=53.34  Aligned_cols=64  Identities=20%  Similarity=0.311  Sum_probs=51.6

Q ss_pred             EeecCCCchhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhh
Q 019274           53 VWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST  119 (343)
Q Consensus        53 ~~~~gG~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~  119 (343)
                      .||.......+.+.|.+.+++.|++|+++++|++|..++  +. +.|+++++++.+|.||+|++...
T Consensus        97 ~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~--~~-~~v~~~~~~i~ad~VIlAtG~~s  160 (400)
T TIGR00275        97 VFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKDD--NG-FGVETSGGEYEADKVILATGGLS  160 (400)
T ss_pred             eECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecC--Ce-EEEEECCcEEEcCEEEECCCCcc
Confidence            355444456799999999999999999999999997765  43 56777777899999999999743

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>PRK07588 hypothetical protein; Provisional

Probab=96.01  E-value=0.73  Score=43.25  Aligned_cols=55  Identities=9%  Similarity=0.008  Sum_probs=41.3

Q ss_pred             hhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhHH
Q 019274           63 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQ  121 (343)
Q Consensus        63 l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~~  121 (343)
                      |.+.|.+.+. .|++|+++++|++|+.++  +.| .|++. |+++++|.||-|-+..+..
T Consensus       105 l~~~L~~~~~-~~v~i~~~~~v~~i~~~~--~~v-~v~~~~g~~~~~d~vIgADG~~S~v  160 (391)
T PRK07588        105 LAAAIYTAID-GQVETIFDDSIATIDEHR--DGV-RVTFERGTPRDFDLVIGADGLHSHV  160 (391)
T ss_pred             HHHHHHHhhh-cCeEEEeCCEEeEEEECC--CeE-EEEECCCCEEEeCEEEECCCCCccc
Confidence            4555555554 378999999999998876  444 36654 6678999999999987743

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=95.97  E-value=0.023  Score=56.12  Aligned_cols=58  Identities=17%  Similarity=0.156  Sum_probs=48.0

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC--Ce--EEec-CEEEEeeChhhH
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KE--TYSA-GAVVLAVGISTL  120 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~--g~--~~~a-d~VV~a~p~~~~  120 (343)
                      ..|+.+|.+.+++.|++|+++++|++|..++  |+|++|...  ++  .+.| +.||+|++...-
T Consensus       217 ~~l~~~L~~~~~~~Gv~i~~~t~v~~Li~~~--g~V~GV~~~~~g~~~~i~a~kaVILAtGGf~~  279 (564)
T PRK12845        217 QALAAGLFAGVLRAGIPIWTETSLVRLTDDG--GRVTGAVVDHRGREVTVTARRGVVLAAGGFDH  279 (564)
T ss_pred             HHHHHHHHHHHHHCCCEEEecCEeeEEEecC--CEEEEEEEEECCcEEEEEcCCEEEEecCCccc
Confidence            5699999999999999999999999998765  899998653  43  3566 589999988664

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=95.96  E-value=1.4  Score=41.17  Aligned_cols=56  Identities=21%  Similarity=0.323  Sum_probs=43.5

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhh
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST  119 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~  119 (343)
                      ..+.+.|.+.+.+.|++++ +++|..+..++  +..+.|+++ |++++||.||.|.+...
T Consensus        85 ~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~--~~~~~v~~~~g~~~~a~~VI~A~G~~s  141 (388)
T TIGR01790        85 TRLHEELLQKCPEGGVLWL-ERKAIHAEADG--VALSTVYCAGGQRIQARLVIDARGFGP  141 (388)
T ss_pred             HHHHHHHHHHHHhcCcEEE-ccEEEEEEecC--CceeEEEeCCCCEEEeCEEEECCCCch
Confidence            4577888888888899886 66888888764  233567776 45899999999999976

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PRK07121 hypothetical protein; Validated

Probab=95.93  E-value=0.022  Score=55.32  Aligned_cols=60  Identities=23%  Similarity=0.299  Sum_probs=49.7

Q ss_pred             chhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC--Ce--EEec-CEEEEeeChhhH
Q 019274           60 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KE--TYSA-GAVVLAVGISTL  120 (343)
Q Consensus        60 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~--g~--~~~a-d~VV~a~p~~~~  120 (343)
                      +..+++.|.+.+++.|++|+++++|++|..+++ |+|++|+..  ++  .+.| +.||+|++....
T Consensus       176 g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~-g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~~  240 (492)
T PRK07121        176 GAMLMDPLAKRAAALGVQIRYDTRATRLIVDDD-GRVVGVEARRYGETVAIRARKGVVLAAGGFAM  240 (492)
T ss_pred             hHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCC-CCEEEEEEEeCCcEEEEEeCCEEEECCCCcCc
Confidence            356899999999999999999999999998754 788888763  32  5788 999999997653

>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E

Probab=95.92  E-value=0.031  Score=55.32  Aligned_cols=58  Identities=21%  Similarity=0.245  Sum_probs=48.9

Q ss_pred             chhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE----CCe--EEecCEEEEeeChhh
Q 019274           60 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST  119 (343)
Q Consensus        60 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~----~g~--~~~ad~VV~a~p~~~  119 (343)
                      +..|+++|.+.+++.|++|+.+++|++|..++  |+|.||..    +|+  .+.|+.||+|++...
T Consensus       118 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~--g~v~Ga~~~~~~~g~~~~i~AkaVILATGG~~  181 (565)
T TIGR01816       118 GHAILHTLYQQNLKADTSFFNEYFALDLLMED--GECRGVIAYCLETGEIHRFRAKAVVLATGGYG  181 (565)
T ss_pred             hHHHHHHHHHHHHhCCCEEEeccEEEEEEeeC--CEEEEEEEEEcCCCcEEEEEeCeEEECCCCcc
Confidence            35689999999999999999999999999875  89998875    243  578999999998864

coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.

>PRK08244 hypothetical protein; Provisional

Probab=95.91  E-value=0.96  Score=43.98  Aligned_cols=55  Identities=24%  Similarity=0.238  Sum_probs=42.4

Q ss_pred             hhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE---CC-eEEecCEEEEeeChhhH
Q 019274           63 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---GK-ETYSAGAVVLAVGISTL  120 (343)
Q Consensus        63 l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~---~g-~~~~ad~VV~a~p~~~~  120 (343)
                      +-+.|.+.+++.|++|+.+++|+++..++  +.+. |++   +| .+++||.||-|-+..+.
T Consensus       102 le~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~v~-v~~~~~~g~~~i~a~~vVgADG~~S~  160 (493)
T PRK08244        102 TEKVLEEHARSLGVEIFRGAEVLAVRQDG--DGVE-VVVRGPDGLRTLTSSYVVGADGAGSI  160 (493)
T ss_pred             HHHHHHHHHHHcCCeEEeCCEEEEEEEcC--CeEE-EEEEeCCccEEEEeCEEEECCCCChH
Confidence            55667777788899999999999998877  4443 333   24 47899999999998764

>PLN02697 lycopene epsilon cyclase

Probab=95.90  E-value=1.9  Score=42.23  Aligned_cols=55  Identities=13%  Similarity=0.190  Sum_probs=43.1

Q ss_pred             hhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE-CCeEEecCEEEEeeChhh
Q 019274           62 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST  119 (343)
Q Consensus        62 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~-~g~~~~ad~VV~a~p~~~  119 (343)
                      .|.+.|.+.+.+.|+++ ++++|++|..++  +.+..+.+ +|.+++|+.||.|.+++.
T Consensus       193 ~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~--~~~~vv~~~dG~~i~A~lVI~AdG~~S  248 (529)
T PLN02697        193 LLHEELLRRCVESGVSY-LSSKVDRITEAS--DGLRLVACEDGRVIPCRLATVASGAAS  248 (529)
T ss_pred             HHHHHHHHHHHhcCCEE-EeeEEEEEEEcC--CcEEEEEEcCCcEEECCEEEECCCcCh
Confidence            46678888888889998 788999998776  33333444 467899999999999987

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=95.89  E-value=0.026  Score=55.99  Aligned_cols=58  Identities=24%  Similarity=0.254  Sum_probs=48.5

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC--Ce--EEec-CEEEEeeChhhH
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KE--TYSA-GAVVLAVGISTL  120 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~--g~--~~~a-d~VV~a~p~~~~  120 (343)
                      ..|+++|.+.+++.|++|+++++|++|..++  ++|.+|...  ++  ++.| +.||+|++...-
T Consensus       221 ~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~~--g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~  283 (578)
T PRK12843        221 NALIGRLLYSLRARGVRILTQTDVESLETDH--GRVIGATVVQGGVRRRIRARGGVVLATGGFNR  283 (578)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEeeC--CEEEEEEEecCCeEEEEEccceEEECCCCccc
Confidence            4689999999999999999999999998775  889888774  33  4676 689999998654

>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=95.85  E-value=0.053  Score=49.84  Aligned_cols=84  Identities=13%  Similarity=0.118  Sum_probs=62.3

Q ss_pred             ccHHHHHHHHHHHH--HhcCCCceeEeecCCCchhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEe
Q 019274           30 CSAAATLGILYFII--LAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYS  107 (343)
Q Consensus        30 ~sa~~~~~~l~~~~--~~~~~~~~~~~~~gG~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~  107 (343)
                      .++..++..+..|+  ++..+.+...||..|+++ |++.+++...-.||+..+|.++.+|....+ |++.+|..++++..
T Consensus       200 ~p~~~~~~ri~~Y~~S~~~yg~~~ylyP~yGlgE-L~QgFaRlsAvyGgTYMLn~pi~ei~~~~~-gk~igvk~~~~v~~  277 (440)
T KOG1439|consen  200 QPAKETLERILLYVRSFARYGKSPYLYPLYGLGE-LPQGFARLSAVYGGTYMLNKPIDEINETKN-GKVIGVKSGGEVAK  277 (440)
T ss_pred             CccHHHHHHHHHHHHHHhhcCCCcceecccCcch-hhHHHHHHhhccCceeecCCceeeeeccCC-ccEEEEecCCceee
Confidence            34445555554442  223334457789999875 999999988778999999999999998544 88888888888888


Q ss_pred             cCEEEEee
Q 019274          108 AGAVVLAV  115 (343)
Q Consensus       108 ad~VV~a~  115 (343)
                      +..||+..
T Consensus       278 ~k~vi~dp  285 (440)
T KOG1439|consen  278 CKKVICDP  285 (440)
T ss_pred             cceEEecC
Confidence            88777654

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=95.84  E-value=0.036  Score=52.92  Aligned_cols=55  Identities=20%  Similarity=0.338  Sum_probs=46.1

Q ss_pred             hhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhh
Q 019274           63 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST  119 (343)
Q Consensus        63 l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~  119 (343)
                      +-+.|.+.+++.|++|+.+++|++|..++  +++.+++.++++++||.||.|.+...
T Consensus       110 fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~--g~v~~v~~~g~~i~A~~VI~A~G~~s  164 (428)
T PRK10157        110 FDAWLMEQAEEAGAQLITGIRVDNLVQRD--GKVVGVEADGDVIEAKTVILADGVNS  164 (428)
T ss_pred             HHHHHHHHHHHCCCEEECCCEEEEEEEeC--CEEEEEEcCCcEEECCEEEEEeCCCH
Confidence            44567888888999999999999998776  67666766677899999999998865

>PRK06834 hypothetical protein; Provisional

Probab=95.84  E-value=1.1  Score=43.67  Aligned_cols=56  Identities=27%  Similarity=0.261  Sum_probs=45.2

Q ss_pred             hhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhH
Q 019274           62 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTL  120 (343)
Q Consensus        62 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~  120 (343)
                      .+-+.|.+.+++.|++|+.+++|++|..++  +.+ .|++. +++++||.||.|.+..+.
T Consensus       101 ~le~~L~~~l~~~gv~i~~~~~v~~v~~~~--~~v-~v~~~~g~~i~a~~vVgADG~~S~  157 (488)
T PRK06834        101 HIERILAEWVGELGVPIYRGREVTGFAQDD--TGV-DVELSDGRTLRAQYLVGCDGGRSL  157 (488)
T ss_pred             HHHHHHHHHHHhCCCEEEcCCEEEEEEEcC--CeE-EEEECCCCEEEeCEEEEecCCCCC
Confidence            356677788888899999999999999877  444 35554 568999999999998774

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=95.74  E-value=0.0038  Score=58.19  Aligned_cols=108  Identities=14%  Similarity=0.041  Sum_probs=73.3

Q ss_pred             CCCCHHHHHHhHHHHHHhhhcCCcccccHHHHHHHHHHHHHhcC--CCceeEeecCCCchhhhHHHHHHHHHcCCeEEcc
Q 019274            4 FGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQ--KNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDG   81 (343)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~~~~--~~~~~~~~~gG~~~~l~~~l~~~l~~~G~~i~~~   81 (343)
                      +.+|+.+++.|+.|+....|+.+|+++++.++..+=........  ...-.++|++| .+.+++.|++   ..+.+|++|
T Consensus       140 ~~~G~~lye~ff~~Yt~K~Wg~~p~el~~~~~~RvP~~~~~d~~yf~d~~q~~P~~G-yt~~~~~ml~---~~~i~v~l~  215 (377)
T TIGR00031       140 QLLYQFLYQKVYKPYTVKQWGLPAEEIDPFVIGRVPVVLSEDSSYFPDRYQGLPKGG-YTKLFEKMLD---HPLIDVKLN  215 (377)
T ss_pred             HHHHHHHHHHhccccCceeeCCChHHCCHHHeEecceEecCCCCccccccccccccc-HHHHHHHHHh---cCCCEEEeC
Confidence            45789999999999999999999999998876422111100000  01234689999 6778887764   347789999


Q ss_pred             eeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhhHH
Q 019274           82 RRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQ  121 (343)
Q Consensus        82 ~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~~~  121 (343)
                      +.+..+...+  ++   +...++.+. +.||.|.|++.+-
T Consensus       216 ~~~~~~~~~~--~~---~~~~~~~~~-~~vi~Tg~id~~f  249 (377)
T TIGR00031       216 CHINLLKDKD--SQ---LHFANKAIR-KPVIYTGLIDQLF  249 (377)
T ss_pred             Cccceeeccc--cc---eeecccccc-CcEEEecCchHHH
Confidence            9888887544  33   333332333 8899998887764

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=95.73  E-value=1  Score=42.55  Aligned_cols=59  Identities=15%  Similarity=0.139  Sum_probs=44.0

Q ss_pred             hhHHHHHHHHHc-CCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhH-HHhh
Q 019274           63 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTL-QELI  124 (343)
Q Consensus        63 l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~-~~Ll  124 (343)
                      |-+.|.+.+.+. |++|+.+++|++|..++  +.+ .|++. |++++||.||.|-+..+. .+.+
T Consensus       113 l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~--~~~-~v~~~~g~~~~a~lvIgADG~~S~vR~~~  174 (405)
T PRK08850        113 IQLALLEQVQKQDNVTLLMPARCQSIAVGE--SEA-WLTLDNGQALTAKLVVGADGANSWLRRQM  174 (405)
T ss_pred             HHHHHHHHHhcCCCeEEEcCCeeEEEEeeC--CeE-EEEECCCCEEEeCEEEEeCCCCChhHHHc
Confidence            455666666654 78999999999998776  443 46665 678999999999998764 3443

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=95.70  E-value=0.029  Score=53.67  Aligned_cols=59  Identities=27%  Similarity=0.295  Sum_probs=48.5

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC---Ce--EEecCEEEEeeChhhH
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG---KE--TYSAGAVVLAVGISTL  120 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~---g~--~~~ad~VV~a~p~~~~  120 (343)
                      ..+++.|.+.+++.|++|+++++|++|..+++ |+|++|++.   ++  .+.++.||+|++....
T Consensus       130 ~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~-g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~  193 (439)
T TIGR01813       130 AEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQ-GTVVGVVVKGKGKGIYIKAAKAVVLATGGFGS  193 (439)
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCEeeEeEECCC-CcEEEEEEEeCCCeEEEEecceEEEecCCCCC
Confidence            35889999999999999999999999998654 778887663   33  4689999999997654

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=95.68  E-value=0.98  Score=42.24  Aligned_cols=55  Identities=16%  Similarity=0.120  Sum_probs=44.1

Q ss_pred             hhhHHHHHHHHHcC-CeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhH
Q 019274           62 KIFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTL  120 (343)
Q Consensus        62 ~l~~~l~~~l~~~G-~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~  120 (343)
                      .+.+.|.+.+++.| ++++ ++.|++|..++  +.+ .|++. |.+++||.||.|.+.+..
T Consensus       112 ~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~--~~~-~v~~~~g~~~~a~~vI~adG~~S~  168 (388)
T PRK07608        112 LIERALWAALRFQPNLTWF-PARAQGLEVDP--DAA-TLTLADGQVLRADLVVGADGAHSW  168 (388)
T ss_pred             HHHHHHHHHHHhCCCcEEE-cceeEEEEecC--CeE-EEEECCCCEEEeeEEEEeCCCCch
Confidence            47788888888888 8889 99999998766  443 46665 558999999999998754

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=95.65  E-value=0.044  Score=48.42  Aligned_cols=59  Identities=25%  Similarity=0.242  Sum_probs=47.8

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC------------CeEEecCEEEEeeChhhH
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG------------KETYSAGAVVLAVGISTL  120 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~------------g~~~~ad~VV~a~p~~~~  120 (343)
                      ..+.+.|.+.+++.|++|+.++.|+++..+++ ++|.+|.+.            ..+++|+.||.|++.+..
T Consensus       104 ~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~-g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~  174 (257)
T PRK04176        104 VEAAAKLAAAAIDAGAKIFNGVSVEDVILRED-PRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAE  174 (257)
T ss_pred             HHHHHHHHHHHHHcCCEEEcCceeceeeEeCC-CcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcH
Confidence            45788899999999999999999999987663 478777653            136899999999997653

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=95.65  E-value=0.033  Score=55.29  Aligned_cols=59  Identities=17%  Similarity=0.217  Sum_probs=48.5

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC--Ce--EEecC-EEEEeeChhhH
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KE--TYSAG-AVVLAVGISTL  120 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~--g~--~~~ad-~VV~a~p~~~~  120 (343)
                      ..++..|.+.+++.|++|+++++|++|..+++ |+|++|...  ++  .+.|+ .||+|++...-
T Consensus       213 ~~~~~~l~~~~~~~gv~i~~~~~~~~Li~d~~-g~V~Gv~~~~~~~~~~i~a~~aVilAtGGf~~  276 (584)
T PRK12835        213 QSLVARLRLALKDAGVPLWLDSPMTELITDPD-GAVVGAVVEREGRTLRIGARRGVILATGGFDH  276 (584)
T ss_pred             HHHHHHHHHHHHhCCceEEeCCEEEEEEECCC-CcEEEEEEEeCCcEEEEEeceeEEEecCcccC
Confidence            45888888889999999999999999998754 889988764  33  46887 59999998653

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=95.59  E-value=0.99  Score=42.67  Aligned_cols=58  Identities=17%  Similarity=0.184  Sum_probs=43.2

Q ss_pred             hhhhHHHHHHHHHc-CCeEEcceeeeEEEecCCCCeEEEEEEC--C--eEEecCEEEEeeChhhHH
Q 019274           61 EKIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCG--K--ETYSAGAVVLAVGISTLQ  121 (343)
Q Consensus        61 ~~l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~~g~v~~V~~~--g--~~~~ad~VV~a~p~~~~~  121 (343)
                      ..+.+.|.+.+.+. |++++++++|++|..++  +.+ .|++.  +  .+++||.||.|-+.....
T Consensus       121 ~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~--~~~-~v~~~~~~~~~~i~adlvIgADG~~S~v  183 (415)
T PRK07364        121 QVLLEALQEFLQSCPNITWLCPAEVVSVEYQQ--DAA-TVTLEIEGKQQTLQSKLVVAADGARSPI  183 (415)
T ss_pred             HHHHHHHHHHHhcCCCcEEEcCCeeEEEEecC--Cee-EEEEccCCcceEEeeeEEEEeCCCCchh
Confidence            34667777777665 78999999999998776  443 35543  3  368999999999987753

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=95.58  E-value=0.039  Score=54.48  Aligned_cols=58  Identities=17%  Similarity=0.208  Sum_probs=48.8

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC--Ce--EEecC-EEEEeeChhhH
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KE--TYSAG-AVVLAVGISTL  120 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~--g~--~~~ad-~VV~a~p~~~~  120 (343)
                      ..|++.|.+.+++.|++|+++++|++|..++  |+|++|...  ++  .+.|+ .||+|++...-
T Consensus       208 ~~l~~~l~~~~~~~gv~i~~~~~v~~Li~~~--g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~~~  270 (557)
T PRK12844        208 AALIGRMLEAALAAGVPLWTNTPLTELIVED--GRVVGVVVVRDGREVLIRARRGVLLASGGFGH  270 (557)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeC--CEEEEEEEEECCeEEEEEecceEEEecCCccC
Confidence            5689999999999999999999999999876  899998773  43  46785 79999987654

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=95.56  E-value=1.3  Score=41.58  Aligned_cols=55  Identities=16%  Similarity=0.150  Sum_probs=41.8

Q ss_pred             hhHHHHHHHHH-cCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhH
Q 019274           63 IFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTL  120 (343)
Q Consensus        63 l~~~l~~~l~~-~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~  120 (343)
                      +-+.|.+.+.+ .|++|+.+++|+++..++  +.+ .|++. +.++++|.||.|.+.+..
T Consensus       114 l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~--~~~-~v~~~~g~~~~a~~vI~AdG~~S~  170 (395)
T PRK05732        114 VGQRLFALLDKAPGVTLHCPARVANVERTQ--GSV-RVTLDDGETLTGRLLVAADGSHSA  170 (395)
T ss_pred             HHHHHHHHHhcCCCcEEEcCCEEEEEEEcC--CeE-EEEECCCCEEEeCEEEEecCCChh
Confidence            44566666655 478999999999998766  444 46665 567899999999998763

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=95.55  E-value=2.3  Score=41.83  Aligned_cols=58  Identities=19%  Similarity=0.108  Sum_probs=42.2

Q ss_pred             hHHHHHHHHHc-CCeEEcceeeeEEEecCCCCeEEEEEE---CC--eEEecCEEEEeeChhhHH-Hhh
Q 019274           64 FEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC---GK--ETYSAGAVVLAVGISTLQ-ELI  124 (343)
Q Consensus        64 ~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~~g~v~~V~~---~g--~~~~ad~VV~a~p~~~~~-~Ll  124 (343)
                      -+.|.+.+.+. |++|+.+++|++|..++  +.|+ |++   +|  .+++||.||-|-+..+.. +.+
T Consensus       116 e~~L~~~~~~~~gv~v~~g~~v~~i~~~~--~~v~-v~~~~~~G~~~~i~ad~vVgADG~~S~vR~~l  180 (538)
T PRK06183        116 EAVLRAGLARFPHVRVRFGHEVTALTQDD--DGVT-VTLTDADGQRETVRARYVVGCDGANSFVRRTL  180 (538)
T ss_pred             HHHHHHHHHhCCCcEEEcCCEEEEEEEcC--CeEE-EEEEcCCCCEEEEEEEEEEecCCCchhHHHHc
Confidence            34555666554 89999999999999877  4443 444   34  378999999999998754 444

>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=95.50  E-value=0.054  Score=53.67  Aligned_cols=59  Identities=19%  Similarity=0.290  Sum_probs=49.0

Q ss_pred             chhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE----CCe--EEecCEEEEeeChhh
Q 019274           60 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST  119 (343)
Q Consensus        60 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~----~g~--~~~ad~VV~a~p~~~  119 (343)
                      +..|+++|.+.+++.|++|+.++.+++|..+++ |+|.||..    +|+  .+.|+.||+|++...
T Consensus       125 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~  189 (570)
T PRK05675        125 GHALLHTLYQGNLKNGTTFLNEWYAVDLVKNQD-GAVVGVIAICIETGETVYIKSKATVLATGGAG  189 (570)
T ss_pred             HHHHHHHHHHHHhccCCEEEECcEEEEEEEcCC-CeEEEEEEEEcCCCcEEEEecCeEEECCCCcc
Confidence            356899999999889999999999999998644 89999875    243  568999999999865

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=95.49  E-value=0.045  Score=53.05  Aligned_cols=58  Identities=14%  Similarity=0.158  Sum_probs=45.9

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE---C-C--eEEecCEEEEeeChhhH
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---G-K--ETYSAGAVVLAVGISTL  120 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~---~-g--~~~~ad~VV~a~p~~~~  120 (343)
                      ..++++|.+.+++.|++|+++++|++|..+++ +. +.|.+   + +  .+++||+||+|++.+..
T Consensus       178 ~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~-~~-v~v~~~~~~~g~~~~i~A~~VV~AAG~~s~  241 (483)
T TIGR01320       178 GALTKQLLGYLVQNGTTIRFGHEVRNLKRQSD-GS-WTVTVKNTRTGGKRTLNTRFVFVGAGGGAL  241 (483)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCC-Ce-EEEEEeeccCCceEEEECCEEEECCCcchH
Confidence            56899999999999999999999999988653 43 33432   2 3  26899999999998874

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=95.47  E-value=0.047  Score=53.29  Aligned_cols=57  Identities=18%  Similarity=0.189  Sum_probs=47.5

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC--C---eEEecCEEEEeeChhh
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--K---ETYSAGAVVLAVGIST  119 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~--g---~~~~ad~VV~a~p~~~  119 (343)
                      ..+++.|.+.+++.|++|+++++|++|..++  |+|++|.+.  +   .++.||.||+|++...
T Consensus       190 ~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~--g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~  251 (506)
T PRK06481        190 GYLVDGLLKNVQERKIPLFVNADVTKITEKD--GKVTGVKVKINGKETKTISSKAVVVTTGGFG  251 (506)
T ss_pred             HHHHHHHHHHHHHcCCeEEeCCeeEEEEecC--CEEEEEEEEeCCCeEEEEecCeEEEeCCCcc
Confidence            3588999999999999999999999998765  788888663  2   2588999999998654

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=95.43  E-value=0.094  Score=49.50  Aligned_cols=59  Identities=17%  Similarity=0.179  Sum_probs=49.4

Q ss_pred             hhhhHHHHHHHHHc-CCeEEcceeeeEEEecCCCCeEEEEEEC----C--eEEecCEEEEeeChhhHH
Q 019274           61 EKIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCG----K--ETYSAGAVVLAVGISTLQ  121 (343)
Q Consensus        61 ~~l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~~g~v~~V~~~----g--~~~~ad~VV~a~p~~~~~  121 (343)
                      ..|.+.|.+.+++. |.+++++++|++|.+.+| |+ |.|.+.    +  .+++|+.|++..+..++.
T Consensus       181 G~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~d-g~-W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~  246 (488)
T PF06039_consen  181 GALTRQLVEYLQKQKGFELHLNHEVTDIKRNGD-GR-WEVKVKDLKTGEKREVRAKFVFVGAGGGALP  246 (488)
T ss_pred             HHHHHHHHHHHHhCCCcEEEecCEeCeeEECCC-CC-EEEEEEecCCCCeEEEECCEEEECCchHhHH
Confidence            35889999999888 999999999999999886 64 666552    2  478999999999999876

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>PRK09126 hypothetical protein; Provisional

Probab=95.43  E-value=0.81  Score=42.90  Aligned_cols=55  Identities=24%  Similarity=0.212  Sum_probs=41.7

Q ss_pred             hhHHHHHHHH-HcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhH
Q 019274           63 IFEPWMDSMR-TRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTL  120 (343)
Q Consensus        63 l~~~l~~~l~-~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~  120 (343)
                      +.+.|.+.+. ..|++|+.+++|+++..++  +.+ .|.+. |++++||.||.|.+....
T Consensus       112 l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~--~~~-~v~~~~g~~~~a~~vI~AdG~~S~  168 (392)
T PRK09126        112 IRRAAYEAVSQQDGIELLTGTRVTAVRTDD--DGA-QVTLANGRRLTARLLVAADSRFSA  168 (392)
T ss_pred             HHHHHHHHHhhCCCcEEEcCCeEEEEEEcC--CeE-EEEEcCCCEEEeCEEEEeCCCCch
Confidence            5556666654 4689999999999998766  443 46654 668999999999998654

>PLN02463 lycopene beta cyclase

Probab=95.41  E-value=2.7  Score=40.39  Aligned_cols=54  Identities=26%  Similarity=0.343  Sum_probs=42.6

Q ss_pred             hhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhh
Q 019274           62 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST  119 (343)
Q Consensus        62 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~  119 (343)
                      .+-+.|.+.+.+.|++++ +++|++|..++  ++ +.|+++ |.+++||.||.|.+...
T Consensus       115 ~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~--~~-~~V~~~dG~~i~A~lVI~AdG~~s  169 (447)
T PLN02463        115 KLKSKMLERCIANGVQFH-QAKVKKVVHEE--SK-SLVVCDDGVKIQASLVLDATGFSR  169 (447)
T ss_pred             HHHHHHHHHHhhcCCEEE-eeEEEEEEEcC--Ce-EEEEECCCCEEEcCEEEECcCCCc
Confidence            455777788888899986 67999998876  44 457776 56899999999999864

>PRK06175 L-aspartate oxidase; Provisional

Probab=95.37  E-value=0.06  Score=51.45  Aligned_cols=58  Identities=12%  Similarity=0.261  Sum_probs=46.1

Q ss_pred             chhhhHHHHHHHHH-cCCeEEcceeeeEEEecCCCCeEEEEEE--CCe--EEecCEEEEeeChhh
Q 019274           60 REKIFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSAGAVVLAVGIST  119 (343)
Q Consensus        60 ~~~l~~~l~~~l~~-~G~~i~~~~~V~~I~~~~~~g~v~~V~~--~g~--~~~ad~VV~a~p~~~  119 (343)
                      +..+++.|.+.+++ .|++|+++++|++|..++  ++|.+|..  +++  .+.|+.||+|++...
T Consensus       127 g~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~--~~v~Gv~~~~~g~~~~i~Ak~VILAtGG~~  189 (433)
T PRK06175        127 GKKVEKILLKKVKKRKNITIIENCYLVDIIEND--NTCIGAICLKDNKQINIYSKVTILATGGIG  189 (433)
T ss_pred             hHHHHHHHHHHHHhcCCCEEEECcEeeeeEecC--CEEEEEEEEECCcEEEEEcCeEEEccCccc
Confidence            34688999988875 499999999999998776  78888653  343  579999999999743

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=95.35  E-value=1.3  Score=41.50  Aligned_cols=56  Identities=11%  Similarity=0.048  Sum_probs=44.1

Q ss_pred             hhhHHHHHHHHHc-CCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhH
Q 019274           62 KIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTL  120 (343)
Q Consensus        62 ~l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~  120 (343)
                      .+-+.|.+.+++. |++++.+++|+++..++  +. +.|.++ +++++||.||.|.+..+.
T Consensus       113 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~--~~-~~v~~~~g~~~~a~~vI~AdG~~S~  170 (391)
T PRK08020        113 VLQLALWQALEAHPNVTLRCPASLQALQRDD--DG-WELTLADGEEIQAKLVIGADGANSQ  170 (391)
T ss_pred             HHHHHHHHHHHcCCCcEEEcCCeeEEEEEcC--Ce-EEEEECCCCEEEeCEEEEeCCCCch
Confidence            3556777777766 89999999999998776  44 346665 568999999999999774

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=95.34  E-value=0.071  Score=53.13  Aligned_cols=58  Identities=24%  Similarity=0.254  Sum_probs=48.5

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE----CCe--EEecCEEEEeeChhh
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST  119 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~----~g~--~~~ad~VV~a~p~~~  119 (343)
                      ..|+++|.+.+++.|++|+.++.|++|..+++ |+|.||..    +|+  .+.|+.||+|++...
T Consensus       149 ~~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~  212 (598)
T PRK09078        149 HAILHTLYQQSLKHNAEFFIEYFALDLIMDDG-GVCRGVVAWNLDDGTLHRFRAHMVVLATGGYG  212 (598)
T ss_pred             HHHHHHHHHHHhhcCCEEEEeEEEEEEEEcCC-CEEEEEEEEECCCCcEEEEEcCEEEECCCCCc
Confidence            46889999999889999999999999988754 78888875    243  678999999998764

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=95.32  E-value=0.065  Score=50.87  Aligned_cols=55  Identities=16%  Similarity=0.189  Sum_probs=45.9

Q ss_pred             hhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-C--eEEecCEEEEeeChh
Q 019274           62 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-K--ETYSAGAVVLAVGIS  118 (343)
Q Consensus        62 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g--~~~~ad~VV~a~p~~  118 (343)
                      .+.+.|.+.+++.|++|+++++|.++..++  +++..+... +  ..++||.||+|++..
T Consensus       260 rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~--~~V~~v~~~~g~~~~i~AD~VVLAtGrf  317 (422)
T PRK05329        260 RLQNALRRAFERLGGRIMPGDEVLGAEFEG--GRVTAVWTRNHGDIPLRARHFVLATGSF  317 (422)
T ss_pred             HHHHHHHHHHHhCCCEEEeCCEEEEEEEeC--CEEEEEEeeCCceEEEECCEEEEeCCCc
Confidence            588999999999999999999999999876  666665543 3  358999999999974

>PRK08401 L-aspartate oxidase; Provisional

Probab=95.30  E-value=0.059  Score=52.01  Aligned_cols=58  Identities=19%  Similarity=0.184  Sum_probs=49.3

Q ss_pred             chhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhhH
Q 019274           60 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL  120 (343)
Q Consensus        60 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~~  120 (343)
                      +..+.+.|.+.+++.|++++.+ .|+.|..++  |+|.+|.++++.+.|+.||+|++....
T Consensus       119 G~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~~--g~v~Gv~~~g~~i~a~~VVLATGG~~~  176 (466)
T PRK08401        119 GKHIIKILYKHARELGVNFIRG-FAEELAIKN--GKAYGVFLDGELLKFDATVIATGGFSG  176 (466)
T ss_pred             hHHHHHHHHHHHHhcCCEEEEe-EeEEEEeeC--CEEEEEEECCEEEEeCeEEECCCcCcC
Confidence            3568999999999999999876 799988765  788888888778999999999998764

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=95.24  E-value=0.064  Score=53.01  Aligned_cols=59  Identities=19%  Similarity=0.179  Sum_probs=48.1

Q ss_pred             chhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC--Ce--EEecC-EEEEeeChhhH
Q 019274           60 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KE--TYSAG-AVVLAVGISTL  120 (343)
Q Consensus        60 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~--g~--~~~ad-~VV~a~p~~~~  120 (343)
                      +..+...|.+.+++.|++|+++++|++|..++  ++|++|+..  ++  .+.|+ .||+|++....
T Consensus       207 g~~~~~~L~~~~~~~gv~v~~~t~v~~l~~~~--g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~  270 (557)
T PRK07843        207 GQALAAGLRIGLQRAGVPVLLNTPLTDLYVED--GRVTGVHAAESGEPQLIRARRGVILASGGFEH  270 (557)
T ss_pred             cHHHHHHHHHHHHcCCCEEEeCCEEEEEEEeC--CEEEEEEEEeCCcEEEEEeceeEEEccCCcCc
Confidence            45688899999999999999999999999876  788888763  43  57886 69999987654

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=95.15  E-value=0.081  Score=52.60  Aligned_cols=59  Identities=14%  Similarity=0.186  Sum_probs=48.6

Q ss_pred             chhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE----CCe--EEecCEEEEeeChhh
Q 019274           60 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST  119 (343)
Q Consensus        60 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~----~g~--~~~ad~VV~a~p~~~  119 (343)
                      +..|+..|.+.+++.|++|++++.|++|..+++ |+|.||..    +|+  .+.|+.||+|++...
T Consensus       142 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~  206 (588)
T PRK08958        142 GHALLHTLYQQNLKNHTTIFSEWYALDLVKNQD-GAVVGCTAICIETGEVVYFKARATVLATGGAG  206 (588)
T ss_pred             HHHHHHHHHHHhhhcCCEEEeCcEEEEEEECCC-CEEEEEEEEEcCCCcEEEEEcCeEEECCCCcc
Confidence            356889999988888999999999999998643 88999875    243  568999999998865

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=95.02  E-value=0.099  Score=51.83  Aligned_cols=57  Identities=26%  Similarity=0.324  Sum_probs=47.8

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE----CCe--EEecCEEEEeeChhh
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST  119 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~----~g~--~~~ad~VV~a~p~~~  119 (343)
                      ..+.+.|.+.+++.|++|+.++.|++|..++  |+|.+|..    +++  .+.|+.||+|++...
T Consensus       129 ~~i~~~L~~~~~~~gv~i~~~~~v~~L~~~~--g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~  191 (566)
T TIGR01812       129 HALLHTLYEQCLKLGVSFFNEYFALDLIHDD--GRVRGVVAYDLKTGEIVFFRAKAVVLATGGYG  191 (566)
T ss_pred             HHHHHHHHHHHHHcCCEEEeccEEEEEEEeC--CEEEEEEEEECCCCcEEEEECCeEEECCCccc
Confidence            4588899998888899999999999998876  88888764    243  579999999999764

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=94.96  E-value=0.11  Score=51.70  Aligned_cols=58  Identities=22%  Similarity=0.276  Sum_probs=48.3

Q ss_pred             chhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE----CCe--EEecCEEEEeeChhh
Q 019274           60 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST  119 (343)
Q Consensus        60 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~----~g~--~~~ad~VV~a~p~~~  119 (343)
                      +..+++.|.+.+++.|++|+.++.|++|..++  |+|.++..    +++  .+.|+.||+|++...
T Consensus       134 G~~i~~~L~~~~~~~gi~i~~~t~v~~L~~~~--g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~  197 (575)
T PRK05945        134 GHAILHELVNNLRRYGVTIYDEWYVMRLILED--NQAKGVVMYHIADGRLEVVRAKAVMFATGGYG  197 (575)
T ss_pred             hHHHHHHHHHHHhhCCCEEEeCcEEEEEEEEC--CEEEEEEEEEcCCCeEEEEECCEEEECCCCCc
Confidence            35689999999999999999999999998876  88887763    243  579999999999864

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=94.95  E-value=0.071  Score=52.90  Aligned_cols=57  Identities=18%  Similarity=0.151  Sum_probs=47.7

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC--Ce--EEecC-EEEEeeChhh
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KE--TYSAG-AVVLAVGIST  119 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~--g~--~~~ad-~VV~a~p~~~  119 (343)
                      ..|+++|.+.+++.|++|+++++|++|..++  ++|++|++.  ++  .+.++ .||+|++...
T Consensus       214 ~~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~~--g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~  275 (574)
T PRK12842        214 NALAARLAKSALDLGIPILTGTPARELLTEG--GRVVGARVIDAGGERRITARRGVVLACGGFS  275 (574)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEeeC--CEEEEEEEEcCCceEEEEeCCEEEEcCCCcc
Confidence            4588999999999999999999999999886  888888763  22  46786 7999999765

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=94.84  E-value=0.1  Score=52.49  Aligned_cols=53  Identities=19%  Similarity=0.195  Sum_probs=43.9

Q ss_pred             HHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC----Ce--EEecCEEEEeeChhh
Q 019274           65 EPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG----KE--TYSAGAVVLAVGIST  119 (343)
Q Consensus        65 ~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~----g~--~~~ad~VV~a~p~~~  119 (343)
                      +.|.+.+++.|++|++++.|++|..++  |+|.||...    |.  .+.|+.||+|++...
T Consensus       174 ~~L~~~~~~~gV~i~~~t~v~~Li~d~--g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~g  232 (640)
T PRK07573        174 QALSRQIAAGTVKMYTRTEMLDLVVVD--GRARGIVARNLVTGEIERHTADAVVLATGGYG  232 (640)
T ss_pred             HHHHHHHHhcCCEEEeceEEEEEEEeC--CEEEEEEEEECCCCcEEEEECCEEEECCCCcc
Confidence            667777888899999999999998876  888888752    33  578999999998754

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=94.80  E-value=0.096  Score=50.89  Aligned_cols=58  Identities=21%  Similarity=0.257  Sum_probs=45.5

Q ss_pred             hhhhHHHHHHHHHcC-CeEEcceeeeEEEecCCCCeEEEEEE---C-Ce--EEecCEEEEeeChhhH
Q 019274           61 EKIFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVC---G-KE--TYSAGAVVLAVGISTL  120 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G-~~i~~~~~V~~I~~~~~~g~v~~V~~---~-g~--~~~ad~VV~a~p~~~~  120 (343)
                      ..+.++|.+.+++.| ++|+++++|++|..+++ ++ +.|.+   . |+  +++|++||+|++.+..
T Consensus       183 ~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~d-g~-~~v~~~~~~~G~~~~i~A~~VVvaAGg~s~  247 (494)
T PRK05257        183 GALTRQLVGYLQKQGNFELQLGHEVRDIKRNDD-GS-WTVTVKDLKTGEKRTVRAKFVFIGAGGGAL  247 (494)
T ss_pred             HHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCC-CC-EEEEEEEcCCCceEEEEcCEEEECCCcchH
Confidence            358899999999887 69999999999998653 54 33443   2 32  6899999999999874

>PRK12839 hypothetical protein; Provisional

Probab=94.72  E-value=0.1  Score=51.72  Aligned_cols=59  Identities=19%  Similarity=0.153  Sum_probs=47.3

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC---Ce-EE-ecCEEEEeeChhhH
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG---KE-TY-SAGAVVLAVGISTL  120 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~---g~-~~-~ad~VV~a~p~~~~  120 (343)
                      ..|+..|.+.+++.|++|+++++|++|..+++ |+|++|...   +. ++ .++.||+|++...-
T Consensus       214 ~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~-g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~~  277 (572)
T PRK12839        214 TALTGRLLRSADDLGVDLRVSTSATSLTTDKN-GRVTGVRVQGPDGAVTVEATRGVVLATGGFPN  277 (572)
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEEEEECCC-CcEEEEEEEeCCCcEEEEeCCEEEEcCCCccc
Confidence            45889999999999999999999999987644 889998753   33 34 45899999987653

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=94.62  E-value=0.13  Score=51.40  Aligned_cols=58  Identities=24%  Similarity=0.271  Sum_probs=44.6

Q ss_pred             chhhhHHHHHHHHHc----CCeEEcceeeeEEEecCCCCeEEEEEEC----Ce--EEecCEEEEeeChh
Q 019274           60 REKIFEPWMDSMRTR----GCEFLDGRRVTDFIYDEERCCISDVVCG----KE--TYSAGAVVLAVGIS  118 (343)
Q Consensus        60 ~~~l~~~l~~~l~~~----G~~i~~~~~V~~I~~~~~~g~v~~V~~~----g~--~~~ad~VV~a~p~~  118 (343)
                      +..++.+|.+.+++.    |++|+++++|++|..+++ |+|+||...    ++  .+.|+.||+|++..
T Consensus       128 G~~i~~~L~~~~~~~~~~~gV~i~~~t~v~~Li~dd~-grV~GV~~~~~~~g~~~~i~AkaVVLATGG~  195 (603)
T TIGR01811       128 GQQLLLALDSALRRQIAAGLVEKYEGWEMLDIIVVDG-NRARGIIARNLVTGEIETHSADAVILATGGY  195 (603)
T ss_pred             hhHHHHHHHHHHHhhhccCCcEEEeCcEEEEEEEcCC-CEEEEEEEEECCCCcEEEEEcCEEEECCCCC
Confidence            345777777666543    799999999999988653 788888752    32  57899999999875

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>TIGR00292 thiazole biosynthesis enzyme

Probab=94.62  E-value=0.16  Score=44.71  Aligned_cols=58  Identities=21%  Similarity=0.300  Sum_probs=46.5

Q ss_pred             hhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-------C-----eEEecCEEEEeeChhh
Q 019274           62 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-------K-----ETYSAGAVVLAVGIST  119 (343)
Q Consensus        62 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-------g-----~~~~ad~VV~a~p~~~  119 (343)
                      .+.+.|.+.+.+.|++|+.++.|+++..+++..+|.+|.++       +     .+++|+.||.|++...
T Consensus       101 el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a  170 (254)
T TIGR00292       101 EFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDA  170 (254)
T ss_pred             HHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCc
Confidence            47888999999999999999999999887621168888763       1     3689999999998654

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PRK08013 oxidoreductase; Provisional

Probab=94.61  E-value=4.1  Score=38.38  Aligned_cols=59  Identities=14%  Similarity=0.054  Sum_probs=44.6

Q ss_pred             hhHHHHHHHHHc-CCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhHH-Hhh
Q 019274           63 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQ-ELI  124 (343)
Q Consensus        63 l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~~-~Ll  124 (343)
                      |-+.|.+.+++. |++|+.+++|++|+.++  +.+ .|++. |++++||.||-|-+.++.. +.+
T Consensus       113 l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~--~~v-~v~~~~g~~i~a~lvVgADG~~S~vR~~~  174 (400)
T PRK08013        113 IHYALWQKAQQSSDITLLAPAELQQVAWGE--NEA-FLTLKDGSMLTARLVVGADGANSWLRNKA  174 (400)
T ss_pred             HHHHHHHHHhcCCCcEEEcCCeeEEEEecC--CeE-EEEEcCCCEEEeeEEEEeCCCCcHHHHHc
Confidence            556777777765 78999999999998776  333 35554 6789999999999988753 443

>TIGR00551 nadB L-aspartate oxidase

Probab=94.59  E-value=0.09  Score=51.10  Aligned_cols=58  Identities=21%  Similarity=0.272  Sum_probs=48.0

Q ss_pred             hhhhHHHHHHHHH-cCCeEEcceeeeEEEecCCCCeEEEEEEC--C--eEEecCEEEEeeChhhH
Q 019274           61 EKIFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVCG--K--ETYSAGAVVLAVGISTL  120 (343)
Q Consensus        61 ~~l~~~l~~~l~~-~G~~i~~~~~V~~I~~~~~~g~v~~V~~~--g--~~~~ad~VV~a~p~~~~  120 (343)
                      ..+.+.|.+.+++ .|++|+.++.|++|..++  ++|.+|.+.  +  ..+.|+.||+|++....
T Consensus       128 ~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~--g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~~  190 (488)
T TIGR00551       128 REVITTLVKKALNHPNIRIIEGENALDLLIET--GRVVGVWVWNRETVETCHADAVVLATGGAGK  190 (488)
T ss_pred             HHHHHHHHHHHHhcCCcEEEECeEeeeeeccC--CEEEEEEEEECCcEEEEEcCEEEECCCcccC
Confidence            4688999999987 699999999999998776  778877664  2  36799999999998753

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=94.57  E-value=0.16  Score=50.86  Aligned_cols=58  Identities=19%  Similarity=0.246  Sum_probs=47.4

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE----CCe--EEecCEEEEeeChhh
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST  119 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~----~g~--~~~ad~VV~a~p~~~  119 (343)
                      ..|..+|.+.+++.|++|+.+++|++|..+++ |+|.||..    +|+  .+.|+.||+|++...
T Consensus       166 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~  229 (617)
T PTZ00139        166 HAMLHTLYGQSLKYDCNFFIEYFALDLIMDED-GECRGVIAMSMEDGSIHRFRAHYTVIATGGYG  229 (617)
T ss_pred             HHHHHHHHHHHHhCCCEEEeceEEEEEEECCC-CEEEEEEEEECCCCeEEEEECCcEEEeCCCCc
Confidence            46889999999899999999999999988433 88888864    243  568999999997753

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=94.54  E-value=0.11  Score=46.75  Aligned_cols=60  Identities=22%  Similarity=0.253  Sum_probs=43.3

Q ss_pred             HHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC---Ce----EEecCEEEEeeChhhHHHhhhh
Q 019274           67 WMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG---KE----TYSAGAVVLAVGISTLQELIKN  126 (343)
Q Consensus        67 l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~---g~----~~~ad~VV~a~p~~~~~~Ll~~  126 (343)
                      |...++..+.+|++++.|++|..+++++++++|++.   +.    ++.++.||+|+++-.+.+||-.
T Consensus       199 L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~LLl~  265 (296)
T PF00732_consen  199 LPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTPRLLLR  265 (296)
T ss_dssp             HHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHHHHHHH
T ss_pred             cchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCChhhhcc
Confidence            444444448999999999999876322788888874   32    4578999999999888776543

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=94.53  E-value=0.14  Score=47.73  Aligned_cols=54  Identities=28%  Similarity=0.321  Sum_probs=43.1

Q ss_pred             hhhhHHHHHHHHHc-CCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeCh
Q 019274           61 EKIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGI  117 (343)
Q Consensus        61 ~~l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~  117 (343)
                      ..+.+.+.+.++++ +.+| ....|++|..++  ++|++|++. |+.+.+|.||+|+++
T Consensus        95 ~~y~~~~~~~l~~~~nl~i-~~~~V~~l~~e~--~~v~GV~~~~g~~~~a~~vVlaTGt  150 (392)
T PF01134_consen   95 DKYSRAMREKLESHPNLTI-IQGEVTDLIVEN--GKVKGVVTKDGEEIEADAVVLATGT  150 (392)
T ss_dssp             HHHHHHHHHHHHTSTTEEE-EES-EEEEEECT--TEEEEEEETTSEEEEECEEEE-TTT
T ss_pred             HHHHHHHHHHHhcCCCeEE-EEcccceEEecC--CeEEEEEeCCCCEEecCEEEEeccc
Confidence            34667777888874 4566 477999999998  899999997 789999999999998

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=94.52  E-value=0.12  Score=51.28  Aligned_cols=57  Identities=18%  Similarity=0.211  Sum_probs=48.2

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC----Ce--EEecCEEEEeeChhh
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG----KE--TYSAGAVVLAVGIST  119 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~----g~--~~~ad~VV~a~p~~~  119 (343)
                      ..++++|.+.+++.|++|+.++.+++|..++  |+|+||...    ++  .+.|+.||+|++...
T Consensus       136 ~~i~~~L~~~~~~~gv~i~~~~~~~~Li~~~--g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~  198 (566)
T PRK06452        136 MALLHTLFERTSGLNVDFYNEWFSLDLVTDN--KKVVGIVAMQMKTLTPFFFKTKAVVLATGGMG  198 (566)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCcEEEEEEEEC--CEEEEEEEEECCCCeEEEEEeCeEEECCCccc
Confidence            4588999998888899999999999999876  899998752    32  568999999999765

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=94.50  E-value=0.16  Score=50.93  Aligned_cols=58  Identities=16%  Similarity=0.235  Sum_probs=48.0

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE----CCe--EEecCEEEEeeChhh
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST  119 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~----~g~--~~~ad~VV~a~p~~~  119 (343)
                      ..|+++|.+.+++.|++|+.++.+.+|..+++ |+|.+|..    +|+  .+.|+.||+|++...
T Consensus       187 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g  250 (635)
T PLN00128        187 HAMLHTLYGQAMKHNTQFFVEYFALDLIMDSD-GACQGVIALNMEDGTLHRFRAHSTILATGGYG  250 (635)
T ss_pred             HHHHHHHHHHHHhCCCEEEEeeEEEEEEEcCC-CEEEEEEEEEcCCCeEEEEEcCeEEECCCCCc
Confidence            45889999988888999999999999988743 78888865    243  578999999999864

>PRK06996 hypothetical protein; Provisional

Probab=94.49  E-value=3.6  Score=38.69  Aligned_cols=53  Identities=17%  Similarity=0.187  Sum_probs=41.7

Q ss_pred             hhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC---C-eEEecCEEEEeeCh
Q 019274           62 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG---K-ETYSAGAVVLAVGI  117 (343)
Q Consensus        62 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~---g-~~~~ad~VV~a~p~  117 (343)
                      .|-+.|.+.+++.|++++.+++|+++..+++  .| .+...   | ++++||.||-|-+.
T Consensus       116 ~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~--~v-~v~~~~~~g~~~i~a~lvIgADG~  172 (398)
T PRK06996        116 SLVAALARAVRGTPVRWLTSTTAHAPAQDAD--GV-TLALGTPQGARTLRARIAVQAEGG  172 (398)
T ss_pred             HHHHHHHHHHHhCCCEEEcCCeeeeeeecCC--eE-EEEECCCCcceEEeeeEEEECCCC
Confidence            4778888889999999999999999987663  33 35543   2 47999999999774

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=94.48  E-value=0.13  Score=50.79  Aligned_cols=58  Identities=21%  Similarity=0.237  Sum_probs=45.0

Q ss_pred             hhhhHHHHHHHHH---c-CCeEEcceeeeEEEecCCCCeEEEEEEC------------------C-eEEecCEEEEeeCh
Q 019274           61 EKIFEPWMDSMRT---R-GCEFLDGRRVTDFIYDEERCCISDVVCG------------------K-ETYSAGAVVLAVGI  117 (343)
Q Consensus        61 ~~l~~~l~~~l~~---~-G~~i~~~~~V~~I~~~~~~g~v~~V~~~------------------g-~~~~ad~VV~a~p~  117 (343)
                      ..++++|.+.+++   . |++|++++++++|..++  |+|++|+..                  + ..+.|+.||+|++.
T Consensus       148 ~~~~~~l~~~~~~~~~~~gv~i~~~t~~~~Li~~~--g~V~Gv~~~~~~~~~~~~~~~~~~~~~~~~~i~AkaVILATGG  225 (549)
T PRK12834        148 PGVVEPFERRVREAAARGLVRFRFRHRVDELVVTD--GAVTGVRGTVLEPSDAERGEASSREVVGEFELRAQAVIVTSGG  225 (549)
T ss_pred             HHHHHHHHHHHHHHHHhCCceEEecCEeeEEEEeC--CEEEEEEEEecccccccccccccccccceEEEecCEEEEeCCC
Confidence            3578888777652   3 58999999999999875  899999741                  1 25789999999987


Q ss_pred             hhH
Q 019274          118 STL  120 (343)
Q Consensus       118 ~~~  120 (343)
                      ..-
T Consensus       226 f~~  228 (549)
T PRK12834        226 IGG  228 (549)
T ss_pred             ccc
Confidence            653

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=94.45  E-value=0.16  Score=51.19  Aligned_cols=58  Identities=19%  Similarity=0.148  Sum_probs=47.5

Q ss_pred             chhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE----CCe--EEecCEEEEeeChhh
Q 019274           60 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST  119 (343)
Q Consensus        60 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~----~g~--~~~ad~VV~a~p~~~  119 (343)
                      ...|...|.+.+++.|++|+.+++|++|..++  |+|.||..    +|+  .+.|+.||+|++...
T Consensus       157 G~~l~~~L~~~~~~~gv~i~~~~~~~~Li~~~--g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g  220 (657)
T PRK08626        157 GHTMLYAVDNEAIKLGVPVHDRKEAIALIHDG--KRCYGAVVRCLITGELRAYVAKATLIATGGYG  220 (657)
T ss_pred             HHHHHHHHHHHHHhCCCEEEeeEEEEEEEEEC--CEEEEEEEEEcCCCcEEEEEcCeEEECCCccc
Confidence            34577888888889999999999999999876  88888765    243  468999999999754

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=94.44  E-value=0.18  Score=50.24  Aligned_cols=58  Identities=14%  Similarity=0.168  Sum_probs=47.8

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE-C---Ce--EEecCEEEEeeChhh
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-G---KE--TYSAGAVVLAVGIST  119 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~-~---g~--~~~ad~VV~a~p~~~  119 (343)
                      ..|++.|.+.+.+.|++|+.++.|++|..+++ |+|.+|.. +   ++  .+.|+.||+|++...
T Consensus       148 ~~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~  211 (591)
T PRK07057        148 HALLHTLYQQNVAAKTQFFVEWMALDLIRDAD-GDVLGVTALEMETGDVYILEAKTTLFATGGAG  211 (591)
T ss_pred             HHHHHHHHHHHHhcCCEEEeCcEEEEEEEcCC-CeEEEEEEEEcCCCeEEEEECCeEEECCCCcc
Confidence            45889999988889999999999999998644 78888865 2   43  568999999998765

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=94.40  E-value=4.5  Score=37.97  Aligned_cols=60  Identities=12%  Similarity=0.006  Sum_probs=43.5

Q ss_pred             hhhHHHHHHHHHcCCeEEcceeeeEEEe-cCCCCeEEEEEE--CCe--EEecCEEEEeeChhhHH-Hhh
Q 019274           62 KIFEPWMDSMRTRGCEFLDGRRVTDFIY-DEERCCISDVVC--GKE--TYSAGAVVLAVGISTLQ-ELI  124 (343)
Q Consensus        62 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~-~~~~g~v~~V~~--~g~--~~~ad~VV~a~p~~~~~-~Ll  124 (343)
                      .+.+.|.+.+.+.|++++++++|+++.. ++  .. ..|+.  +|+  +++||.||-|=+..+.. +.+
T Consensus       104 ~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~--~~-~~V~~~~~G~~~~i~ad~vVgADG~~S~vR~~~  169 (392)
T PRK08243        104 EVTRDLMAARLAAGGPIRFEASDVALHDFDS--DR-PYVTYEKDGEEHRLDCDFIAGCDGFHGVSRASI  169 (392)
T ss_pred             HHHHHHHHHHHhCCCeEEEeeeEEEEEecCC--Cc-eEEEEEcCCeEEEEEeCEEEECCCCCCchhhhc
Confidence            3567777777788999999999999976 33  22 23444  353  68999999999987753 444

>PRK06126 hypothetical protein; Provisional

Probab=94.35  E-value=5.8  Score=39.09  Aligned_cols=55  Identities=22%  Similarity=0.251  Sum_probs=40.5

Q ss_pred             hhHHHHHHHHHc-CCeEEcceeeeEEEecCCCCeEEEEEE---C-Ce--EEecCEEEEeeChhhH
Q 019274           63 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC---G-KE--TYSAGAVVLAVGISTL  120 (343)
Q Consensus        63 l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~~g~v~~V~~---~-g~--~~~ad~VV~a~p~~~~  120 (343)
                      |-+.|.+.+++. |++|+++++|++|..++  +.|. +++   . |+  ++++|.||.|.+..+.
T Consensus       128 l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~--~~v~-v~~~~~~~g~~~~i~ad~vVgADG~~S~  189 (545)
T PRK06126        128 LEPILLEHAAAQPGVTLRYGHRLTDFEQDA--DGVT-ATVEDLDGGESLTIRADYLVGCDGARSA  189 (545)
T ss_pred             HHHHHHHHHHhCCCceEEeccEEEEEEECC--CeEE-EEEEECCCCcEEEEEEEEEEecCCcchH
Confidence            445666666654 78999999999999876  4444 332   2 43  6899999999999774

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=94.32  E-value=0.1  Score=48.48  Aligned_cols=53  Identities=17%  Similarity=0.144  Sum_probs=42.2

Q ss_pred             hhhhHHHHHHHHHc-CCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhhH
Q 019274           61 EKIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL  120 (343)
Q Consensus        61 ~~l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~~  120 (343)
                      ..++.+|.+.+.+. |++|+.+++|++|.  .  +   .|+++++.++||+||+|++++..
T Consensus       145 ~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~--~--~---~v~t~~g~i~a~~VV~A~G~~s~  198 (365)
T TIGR03364       145 REAIPALAAYLAEQHGVEFHWNTAVTSVE--T--G---TVRTSRGDVHADQVFVCPGADFE  198 (365)
T ss_pred             HHHHHHHHHHHHhcCCCEEEeCCeEEEEe--c--C---eEEeCCCcEEeCEEEECCCCChh
Confidence            34778888887775 99999999999995  2  3   36666556789999999999764

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PRK07512 L-aspartate oxidase; Provisional

Probab=94.30  E-value=0.094  Score=51.28  Aligned_cols=58  Identities=22%  Similarity=0.352  Sum_probs=47.6

Q ss_pred             chhhhHHHHHHHHHc-CCeEEcceeeeEEEecCCCCeEEEEEEC--Ce--EEecCEEEEeeChhh
Q 019274           60 REKIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCG--KE--TYSAGAVVLAVGIST  119 (343)
Q Consensus        60 ~~~l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~~g~v~~V~~~--g~--~~~ad~VV~a~p~~~  119 (343)
                      +..++++|.+.+++. |++|+.++.|++|..++  |+|++|.+.  ++  .+.|+.||+|++...
T Consensus       135 G~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~~--g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~~  197 (513)
T PRK07512        135 GAAIMRALIAAVRATPSITVLEGAEARRLLVDD--GAVAGVLAATAGGPVVLPARAVVLATGGIG  197 (513)
T ss_pred             HHHHHHHHHHHHHhCCCCEEEECcChhheeecC--CEEEEEEEEeCCeEEEEECCEEEEcCCCCc
Confidence            356899999988775 89999999999998776  888888763  33  579999999999854

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=94.23  E-value=0.18  Score=48.32  Aligned_cols=63  Identities=25%  Similarity=0.371  Sum_probs=48.5

Q ss_pred             chhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhhHHHhhh
Q 019274           60 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIK  125 (343)
Q Consensus        60 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~~~~Ll~  125 (343)
                      ...+.+.+.+.+++.|++|+++++|++|.. +  +++..+.++++++++|.||++++...-..++.
T Consensus       190 ~~~~~~~l~~~l~~~gI~v~~~~~v~~i~~-~--~~~~~v~~~~~~i~~d~vi~a~G~~p~~~~l~  252 (444)
T PRK09564        190 DKEITDVMEEELRENGVELHLNEFVKSLIG-E--DKVEGVVTDKGEYEADVVIVATGVKPNTEFLE  252 (444)
T ss_pred             CHHHHHHHHHHHHHCCCEEEcCCEEEEEec-C--CcEEEEEeCCCEEEcCEEEECcCCCcCHHHHH
Confidence            355778888899999999999999999964 3  44566777777899999999998754333443

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=94.16  E-value=0.14  Score=49.59  Aligned_cols=58  Identities=12%  Similarity=0.091  Sum_probs=44.4

Q ss_pred             hhhhHHHHHHHHH-cCCeEEcceeeeEEEecCCCCeEEEEE---EC-Ce--EEecCEEEEeeChhhH
Q 019274           61 EKIFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVV---CG-KE--TYSAGAVVLAVGISTL  120 (343)
Q Consensus        61 ~~l~~~l~~~l~~-~G~~i~~~~~V~~I~~~~~~g~v~~V~---~~-g~--~~~ad~VV~a~p~~~~  120 (343)
                      ..|.++|.+.+.+ .|++|+++++|+.|..+++ +. |.|.   ++ ++  +++||.||+|++.+..
T Consensus       184 ~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d-~~-w~v~v~~t~~g~~~~i~Ad~VV~AAGawS~  248 (497)
T PRK13339        184 GALTRKLAKHLESHPNAQVKYNHEVVDLERLSD-GG-WEVTVKDRNTGEKREQVADYVFIGAGGGAI  248 (497)
T ss_pred             HHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCC-CC-EEEEEEecCCCceEEEEcCEEEECCCcchH
Confidence            3578889888864 4899999999999988732 44 3444   33 32  6899999999999884

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=94.15  E-value=0.16  Score=50.14  Aligned_cols=58  Identities=19%  Similarity=0.221  Sum_probs=47.0

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE----CCe--EEecCEEEEeeChhh
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST  119 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~----~g~--~~~ad~VV~a~p~~~  119 (343)
                      ..+++.|.+.+++.|++|++++.|++|..+++ ++|++|..    +++  .+.|+.||+|++...
T Consensus       134 ~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~-~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~  197 (543)
T PRK06263        134 HEMMMGLMEYLIKERIKILEEVMAIKLIVDEN-REVIGAIFLDLRNGEIFPIYAKATILATGGAG  197 (543)
T ss_pred             HHHHHHHHHHHhcCCCEEEeCeEeeeeEEeCC-cEEEEEEEEECCCCcEEEEEcCcEEECCCCCC
Confidence            45889999988889999999999999988763 45887753    243  578999999999754

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=93.94  E-value=0.19  Score=49.22  Aligned_cols=57  Identities=12%  Similarity=0.194  Sum_probs=45.4

Q ss_pred             hhhhHHHHHHHHHc-CCeEEcceeeeEEEecCCCCeEEEEEEC--Ce--EEecC-EEEEeeChhh
Q 019274           61 EKIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCG--KE--TYSAG-AVVLAVGIST  119 (343)
Q Consensus        61 ~~l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~~g~v~~V~~~--g~--~~~ad-~VV~a~p~~~  119 (343)
                      ..++..+.+.+.+. |++|+++++|++|..++  |+|.+|+..  ++  ++.|+ .||+|++...
T Consensus       173 ~~l~~~l~~~~~~~~gv~i~~~t~~~~Li~~~--g~v~Gv~~~~~g~~~~i~A~k~VIlAtGG~~  235 (513)
T PRK12837        173 RALIGRFLAALARFPNARLRLNTPLVELVVED--GRVVGAVVERGGERRRVRARRGVLLAAGGFE  235 (513)
T ss_pred             HHHHHHHHHHHHhCCCCEEEeCCEEEEEEecC--CEEEEEEEEECCcEEEEEeCceEEEeCCCcc
Confidence            35788888877664 99999999999998876  889888763  33  57886 7999998864

>PRK08275 putative oxidoreductase; Provisional

Probab=93.91  E-value=0.22  Score=49.21  Aligned_cols=58  Identities=16%  Similarity=0.182  Sum_probs=47.8

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE----CCe--EEecCEEEEeeChhh
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST  119 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~----~g~--~~~ad~VV~a~p~~~  119 (343)
                      ..+.+.|.+.+++.|++|+.++.|++|..+++ |+|.+|..    +|+  .+.|+.||+|++...
T Consensus       137 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~  200 (554)
T PRK08275        137 HDIKKVLYRQLKRARVLITNRIMATRLLTDAD-GRVAGALGFDCRTGEFLVIRAKAVILCCGAAG  200 (554)
T ss_pred             HHHHHHHHHHHHHCCCEEEcceEEEEEEEcCC-CeEEEEEEEecCCCcEEEEECCEEEECCCCcc
Confidence            45889999999999999999999999988733 78888864    243  478999999999864

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=93.80  E-value=0.15  Score=47.83  Aligned_cols=54  Identities=28%  Similarity=0.301  Sum_probs=44.0

Q ss_pred             CchhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-Ce-EEecCEEEEeeChhh
Q 019274           59 LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KE-TYSAGAVVLAVGIST  119 (343)
Q Consensus        59 ~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~-~~~ad~VV~a~p~~~  119 (343)
                      +...+.+...+.|+++|++|+++++|++|..+       +|+++ |+ ++.++.+|.|++...
T Consensus       207 ~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~-------~v~~~~g~~~I~~~tvvWaaGv~a  262 (405)
T COG1252         207 FPPKLSKYAERALEKLGVEVLLGTPVTEVTPD-------GVTLKDGEEEIPADTVVWAAGVRA  262 (405)
T ss_pred             CCHHHHHHHHHHHHHCCCEEEcCCceEEECCC-------cEEEccCCeeEecCEEEEcCCCcC
Confidence            35678999999999999999999999999743       24454 44 599999999998743

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=93.79  E-value=0.24  Score=49.29  Aligned_cols=59  Identities=29%  Similarity=0.364  Sum_probs=47.5

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCC--CCeEEEEEE----CCe--EEecCEEEEeeChhh
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEE--RCCISDVVC----GKE--TYSAGAVVLAVGIST  119 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~--~g~v~~V~~----~g~--~~~ad~VV~a~p~~~  119 (343)
                      ..+++.|.+.+++.|++|+.++.|++|..+++  +|+|.||..    +++  .+.|+.||+|++...
T Consensus       140 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~  206 (583)
T PRK08205        140 HMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSG  206 (583)
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCc
Confidence            56889999999999999999999999987641  157888865    243  578999999999865

>PRK06116 glutathione reductase; Validated

Probab=93.73  E-value=0.26  Score=47.30  Aligned_cols=57  Identities=14%  Similarity=0.231  Sum_probs=45.2

Q ss_pred             chhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChh
Q 019274           60 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS  118 (343)
Q Consensus        60 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~  118 (343)
                      ...+.+.+.+.+++.|++|+++++|.+|..+++ +.+ .|.+. |+++++|.||++++..
T Consensus       207 ~~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~-g~~-~v~~~~g~~i~~D~Vv~a~G~~  264 (450)
T PRK06116        207 DPDIRETLVEEMEKKGIRLHTNAVPKAVEKNAD-GSL-TLTLEDGETLTVDCLIWAIGRE  264 (450)
T ss_pred             CHHHHHHHHHHHHHCCcEEECCCEEEEEEEcCC-ceE-EEEEcCCcEEEeCEEEEeeCCC
Confidence            345778888999999999999999999987653 433 35554 6789999999999763

>PRK07804 L-aspartate oxidase; Provisional

Probab=93.68  E-value=0.2  Score=49.40  Aligned_cols=58  Identities=19%  Similarity=0.179  Sum_probs=48.0

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-------C--eEEecCEEEEeeChhh
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-------K--ETYSAGAVVLAVGIST  119 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-------g--~~~~ad~VV~a~p~~~  119 (343)
                      ..+.+.|.+.+++.|++|+.++.|.+|..+++ |+|.+|.+.       +  ..+.|+.||+|++...
T Consensus       144 ~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~-g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~  210 (541)
T PRK07804        144 AEVQRALDAAVRADPLDIREHALALDLLTDGT-GAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLG  210 (541)
T ss_pred             HHHHHHHHHHHHhCCCEEEECeEeeeeEEcCC-CeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCC
Confidence            45889999999999999999999999988754 688887652       2  3578999999999854

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=93.62  E-value=8.1  Score=38.14  Aligned_cols=61  Identities=13%  Similarity=0.107  Sum_probs=42.3

Q ss_pred             hhHHHHHHHHHc-CCeEEcceeeeEEEecCCCCeEE-EEEEC-Ce-EEecCEEEEeeChhhH-HHhhh
Q 019274           63 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCIS-DVVCG-KE-TYSAGAVVLAVGISTL-QELIK  125 (343)
Q Consensus        63 l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~~g~v~-~V~~~-g~-~~~ad~VV~a~p~~~~-~~Ll~  125 (343)
                      +-+.|.+.+++. |++|+++++|+++..++  +.+. .++.. +. +++||.||.|.+.... .+.+.
T Consensus       127 le~~L~~~~~~~~~v~v~~~~~v~~i~~~~--~~v~v~~~~~~g~~~i~ad~vVgADG~~S~vR~~lg  192 (547)
T PRK08132        127 VEGYLVERAQALPNIDLRWKNKVTGLEQHD--DGVTLTVETPDGPYTLEADWVIACDGARSPLREMLG  192 (547)
T ss_pred             HHHHHHHHHHhCCCcEEEeCCEEEEEEEcC--CEEEEEEECCCCcEEEEeCEEEECCCCCcHHHHHcC
Confidence            345566666665 68999999999999876  4332 22222 33 6899999999998774 34443

>PRK07395 L-aspartate oxidase; Provisional

Probab=93.42  E-value=0.2  Score=49.39  Aligned_cols=59  Identities=19%  Similarity=0.184  Sum_probs=46.8

Q ss_pred             chhhhHHHHHHHHHc-CCeEEcceeeeEEEecCCCCeEEEEEEC--Ce--EEecCEEEEeeChh
Q 019274           60 REKIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCG--KE--TYSAGAVVLAVGIS  118 (343)
Q Consensus        60 ~~~l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~~g~v~~V~~~--g~--~~~ad~VV~a~p~~  118 (343)
                      +..++++|.+.+++. |++|++++.|++|..++++|+|.||...  +.  .+.|+.||+|++..
T Consensus       133 G~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~AkaVILATGG~  196 (553)
T PRK07395        133 GRAIVTTLTEQVLQRPNIEIISQALALSLWLEPETGRCQGISLLYQGQITWLRAGAVILATGGG  196 (553)
T ss_pred             hHHHHHHHHHHHhhcCCcEEEECcChhhheecCCCCEEEEEEEEECCeEEEEEcCEEEEcCCCC
Confidence            356899999988754 8999999999999886321788888653  43  46899999999985

>PRK08071 L-aspartate oxidase; Provisional

Probab=93.23  E-value=0.18  Score=49.27  Aligned_cols=56  Identities=21%  Similarity=0.273  Sum_probs=45.2

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC---Ce--EEecCEEEEeeChhh
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG---KE--TYSAGAVVLAVGIST  119 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~---g~--~~~ad~VV~a~p~~~  119 (343)
                      ..+.++|.+.++ .|++|+.++.|++|..++  |+|.+|...   ++  .+.|+.||+|++...
T Consensus       130 ~~i~~~L~~~~~-~gV~i~~~~~v~~Li~~~--g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~~  190 (510)
T PRK08071        130 KNLLEHLLQELV-PHVTVVEQEMVIDLIIEN--GRCIGVLTKDSEGKLKRYYADYVVLASGGCG  190 (510)
T ss_pred             HHHHHHHHHHHh-cCCEEEECeEhhheeecC--CEEEEEEEEECCCcEEEEEcCeEEEecCCCc
Confidence            347888888776 599999999999998776  788888763   32  578999999998855

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=93.09  E-value=0.35  Score=48.37  Aligned_cols=57  Identities=21%  Similarity=0.239  Sum_probs=45.9

Q ss_pred             hhhhHHHHHHHHHcC-CeEEcceeeeEEEecCCCCeEEEEEE---C-Ce--EEecCEEEEeeChhh
Q 019274           61 EKIFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVC---G-KE--TYSAGAVVLAVGIST  119 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G-~~i~~~~~V~~I~~~~~~g~v~~V~~---~-g~--~~~ad~VV~a~p~~~  119 (343)
                      ..+.+.|.+.+++.| ++|+.++.|.+|..++  ++|++|..   . ++  .+.|+.||+|++...
T Consensus       132 ~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~~--g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~  195 (608)
T PRK06854        132 ESYKPIVAEAAKKALGDNVLNRVFITDLLVDD--NRIAGAVGFSVRENKFYVFKAKAVIVATGGAA  195 (608)
T ss_pred             HHHHHHHHHHHHhcCCCEEEeCCEEEEEEEeC--CEEEEEEEEEccCCcEEEEECCEEEECCCchh
Confidence            357888888887776 9999999999998776  78888753   2 33  679999999999765

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=93.07  E-value=0.18  Score=47.47  Aligned_cols=64  Identities=22%  Similarity=0.304  Sum_probs=53.5

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhHHHhhh
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQELIK  125 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~~~Ll~  125 (343)
                      ..+-+.+.++++++|+++++++.|.++.-..+ |++.-|.+. +.++.||-||+.+++....+++.
T Consensus       255 ~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~-Gev~~V~l~dg~~l~adlvv~GiG~~p~t~~~~  319 (478)
T KOG1336|consen  255 PSIGQFYEDYYENKGVKFYLGTVVSSLEGNSD-GEVSEVKLKDGKTLEADLVVVGIGIKPNTSFLE  319 (478)
T ss_pred             HHHHHHHHHHHHhcCeEEEEecceeecccCCC-CcEEEEEeccCCEeccCeEEEeecccccccccc
Confidence            45778889999999999999999999987766 888888876 67999999999999865544443

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=92.92  E-value=0.36  Score=34.02  Aligned_cols=42  Identities=17%  Similarity=0.234  Sum_probs=34.5

Q ss_pred             CCchhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC
Q 019274           58 TLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG  102 (343)
Q Consensus        58 G~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~  102 (343)
                      .+...+.+.+.+.+++.|++|++++.|++|..+++ + +. |++.
T Consensus        37 ~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~-~-~~-V~~~   78 (80)
T PF00070_consen   37 GFDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGD-G-VE-VTLE   78 (80)
T ss_dssp             TSSHHHHHHHHHHHHHTTEEEEESEEEEEEEEETT-S-EE-EEEE
T ss_pred             hcCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCC-E-EE-EEEe
Confidence            34566888899999999999999999999998885 5 65 6653

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=92.82  E-value=0.43  Score=45.63  Aligned_cols=56  Identities=25%  Similarity=0.232  Sum_probs=44.0

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhh
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST  119 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~  119 (343)
                      ..+.+.+.+.+++.|++++++++|++|..++  +++ .+..+++++++|.||++++...
T Consensus       198 ~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~--~~v-~v~~~g~~i~~D~viva~G~~p  253 (438)
T PRK07251        198 PSVAALAKQYMEEDGITFLLNAHTTEVKNDG--DQV-LVVTEDETYRFDALLYATGRKP  253 (438)
T ss_pred             HHHHHHHHHHHHHcCCEEEcCCEEEEEEecC--CEE-EEEECCeEEEcCEEEEeeCCCC
Confidence            4466777788899999999999999998755  443 3555677899999999987643

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=92.71  E-value=0.4  Score=45.90  Aligned_cols=56  Identities=16%  Similarity=0.238  Sum_probs=44.4

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhh
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST  119 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~  119 (343)
                      ..+.+.+.+.+++.|+++++++.|++|..++  +.+ .+.++++++.+|.||++++...
T Consensus       199 ~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~--~~v-~v~~~~g~i~~D~vl~a~G~~p  254 (441)
T PRK08010        199 RDIADNIATILRDQGVDIILNAHVERISHHE--NQV-QVHSEHAQLAVDALLIASGRQP  254 (441)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC--CEE-EEEEcCCeEEeCEEEEeecCCc
Confidence            4577888889999999999999999998765  543 3555555689999999987643

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=92.63  E-value=0.52  Score=45.42  Aligned_cols=56  Identities=21%  Similarity=0.262  Sum_probs=44.0

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE-CC---eEEecCEEEEeeChhh
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK---ETYSAGAVVLAVGIST  119 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~-~g---~~~~ad~VV~a~p~~~  119 (343)
                      ..+.+.+.+.+++.|++|+++++|++|..++  +.+ .+.+ ++   +++++|.||++++...
T Consensus       213 ~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~--~~v-~v~~~~gg~~~~i~~D~vi~a~G~~p  272 (462)
T PRK06416        213 KEISKLAERALKKRGIKIKTGAKAKKVEQTD--DGV-TVTLEDGGKEETLEADYVLVAVGRRP  272 (462)
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCEEEEEEEeC--CEE-EEEEEeCCeeEEEEeCEEEEeeCCcc
Confidence            4577888888999999999999999998765  443 3444 34   5789999999998643

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=92.62  E-value=0.49  Score=45.93  Aligned_cols=57  Identities=12%  Similarity=0.256  Sum_probs=45.6

Q ss_pred             chhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChh
Q 019274           60 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS  118 (343)
Q Consensus        60 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~  118 (343)
                      ...+.+.+.+.+++.|++|++++.|++|..+++ +. ..|++. ++++++|.||++++..
T Consensus       230 d~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~-~~-~~v~~~~g~~i~~D~vl~a~G~~  287 (486)
T TIGR01423       230 DSTLRKELTKQLRANGINIMTNENPAKVTLNAD-GS-KHVTFESGKTLDVDVVMMAIGRV  287 (486)
T ss_pred             CHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCC-ce-EEEEEcCCCEEEcCEEEEeeCCC
Confidence            456788999999999999999999999987653 43 345554 6689999999999854

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=92.60  E-value=0.52  Score=44.10  Aligned_cols=56  Identities=11%  Similarity=0.153  Sum_probs=44.3

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhh
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST  119 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~  119 (343)
                      ..+.+.+.+.+++.|++++++++|++|..++  +. +.|.+. |+++++|.||++++...
T Consensus       183 ~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~--~~-~~v~~~~g~~i~~D~vI~a~G~~p  239 (377)
T PRK04965        183 PEVSSRLQHRLTEMGVHLLLKSQLQGLEKTD--SG-IRATLDSGRSIEVDAVIAAAGLRP  239 (377)
T ss_pred             HHHHHHHHHHHHhCCCEEEECCeEEEEEccC--CE-EEEEEcCCcEEECCEEEECcCCCc
Confidence            3456778888999999999999999998765  43 346654 67899999999998744

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=92.58  E-value=0.51  Score=46.91  Aligned_cols=57  Identities=21%  Similarity=0.234  Sum_probs=46.1

Q ss_pred             hhhhHHHHHHHHH-cCCeEEcceeeeEEEecCCCCeEEEEEE----CCe--EEecCEEEEeeChhh
Q 019274           61 EKIFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST  119 (343)
Q Consensus        61 ~~l~~~l~~~l~~-~G~~i~~~~~V~~I~~~~~~g~v~~V~~----~g~--~~~ad~VV~a~p~~~  119 (343)
                      ..++++|.+.+.+ .|++|+.++.|++|..++  |+|.+|..    +++  .+.|+.||+|++...
T Consensus       137 ~~i~~~L~~~~~~~~gv~i~~~~~v~~Li~~~--g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~  200 (577)
T PRK06069        137 FYIMHTLYSRALRFDNIHFYDEHFVTSLIVEN--GVFKGVTAIDLKRGEFKVFQAKAGIIATGGAG  200 (577)
T ss_pred             HHHHHHHHHHHHhcCCCEEEECCEEEEEEEEC--CEEEEEEEEEcCCCeEEEEECCcEEEcCchhc
Confidence            4588889888766 589999999999998876  88888754    243  578999999999864

>PLN02985 squalene monooxygenase

Probab=92.56  E-value=11  Score=36.88  Aligned_cols=56  Identities=18%  Similarity=0.197  Sum_probs=40.1

Q ss_pred             hhhHHHHHHHHHc-CCeEEcceeeeEEEecCCCCeEEEEEE---CCe--EEecCEEEEeeChhhH
Q 019274           62 KIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC---GKE--TYSAGAVVLAVGISTL  120 (343)
Q Consensus        62 ~l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~~g~v~~V~~---~g~--~~~ad~VV~a~p~~~~  120 (343)
                      .|.+.|.+.+.+. +++++.+ .|.++..++  +.+.+|++   +|+  +++||.||.|-+..+.
T Consensus       148 ~l~~~L~~~a~~~~~V~i~~g-tvv~li~~~--~~v~gV~~~~~dG~~~~~~AdLVVgADG~~S~  209 (514)
T PLN02985        148 RFVQRLRQKASSLPNVRLEEG-TVKSLIEEK--GVIKGVTYKNSAGEETTALAPLTVVCDGCYSN  209 (514)
T ss_pred             HHHHHHHHHHHhCCCeEEEee-eEEEEEEcC--CEEEEEEEEcCCCCEEEEECCEEEECCCCchH
Confidence            4677888887766 5788765 577776655  66667765   343  4579999999998774

>PLN02507 glutathione reductase

Probab=92.50  E-value=0.54  Score=45.86  Aligned_cols=57  Identities=19%  Similarity=0.299  Sum_probs=45.0

Q ss_pred             CchhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChh
Q 019274           59 LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS  118 (343)
Q Consensus        59 ~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~  118 (343)
                      +...+.+.+.+.+++.|++|++++.|++|..++  +.+ .|.++ |+++++|.||++++..
T Consensus       242 ~d~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~--~~~-~v~~~~g~~i~~D~vl~a~G~~  299 (499)
T PLN02507        242 FDDEMRAVVARNLEGRGINLHPRTNLTQLTKTE--GGI-KVITDHGEEFVADVVLFATGRA  299 (499)
T ss_pred             cCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeC--CeE-EEEECCCcEEEcCEEEEeecCC
Confidence            345577888888999999999999999998655  443 35554 5689999999999864

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=92.44  E-value=0.49  Score=45.58  Aligned_cols=57  Identities=14%  Similarity=0.124  Sum_probs=45.4

Q ss_pred             chhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhh
Q 019274           60 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST  119 (343)
Q Consensus        60 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~  119 (343)
                      ...+.+.+.+.+++.|++++++++|++|..++  +.+ .+++. |+++++|.||++++...
T Consensus       215 d~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~--~~~-~v~~~~g~~i~~D~vi~a~G~~p  272 (461)
T PRK05249        215 DDEISDALSYHLRDSGVTIRHNEEVEKVEGGD--DGV-IVHLKSGKKIKADCLLYANGRTG  272 (461)
T ss_pred             CHHHHHHHHHHHHHcCCEEEECCEEEEEEEeC--CeE-EEEECCCCEEEeCEEEEeecCCc
Confidence            34577889999999999999999999998765  433 35554 66899999999998654

>PRK14694 putative mercuric reductase; Provisional

Probab=92.35  E-value=0.47  Score=45.86  Aligned_cols=56  Identities=18%  Similarity=0.194  Sum_probs=45.2

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhh
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST  119 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~  119 (343)
                      ..+.+.+.+.+++.|+++++++.|++|..++  +. ..+.++++++++|.||++++...
T Consensus       218 ~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~--~~-~~v~~~~~~i~~D~vi~a~G~~p  273 (468)
T PRK14694        218 PAVGEAIEAAFRREGIEVLKQTQASEVDYNG--RE-FILETNAGTLRAEQLLVATGRTP  273 (468)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC--CE-EEEEECCCEEEeCEEEEccCCCC
Confidence            4578889999999999999999999998665  43 34556666799999999997644

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=92.34  E-value=0.46  Score=47.72  Aligned_cols=56  Identities=20%  Similarity=0.249  Sum_probs=45.9

Q ss_pred             hhhhHHHHHHHHHc--------C-----CeEEcceeeeEEEecCCCCeEEEEEE----CCe--EEecCEEEEeeChh
Q 019274           61 EKIFEPWMDSMRTR--------G-----CEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIS  118 (343)
Q Consensus        61 ~~l~~~l~~~l~~~--------G-----~~i~~~~~V~~I~~~~~~g~v~~V~~----~g~--~~~ad~VV~a~p~~  118 (343)
                      ..++++|.+.+++.        |     ++|+.++.|.+|..++  |+|.+|..    +++  .+.|+.||+|++..
T Consensus       138 ~~i~~~L~~~~~~~~~~~~~~~G~~~~~v~i~~~~~v~~L~~~~--g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~  212 (626)
T PRK07803        138 LELIRTLQQKIVSLQQEDHAELGDYEARIKVFAECTITELLKDG--GRIAGAFGYWRESGRFVLFEAPAVVLATGGI  212 (626)
T ss_pred             HHHHHHHHHHHHhhhccccccccCCcCceEEEeCCEEEEEEEEC--CEEEEEEEEECCCCeEEEEEcCeEEECCCcc
Confidence            45888999888777        7     8999999999999876  88888754    243  57999999999974

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=92.19  E-value=0.64  Score=44.76  Aligned_cols=56  Identities=18%  Similarity=0.255  Sum_probs=44.3

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-C--eEEecCEEEEeeChhh
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-K--ETYSAGAVVLAVGIST  119 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g--~~~~ad~VV~a~p~~~  119 (343)
                      ..+.+.+.+.+++.|+++++++.|++|..++  +++. +.+. |  .++++|.||++++...
T Consensus       211 ~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~--~~v~-v~~~~g~~~~i~~D~vi~a~G~~p  269 (461)
T TIGR01350       211 AEVSKVVAKALKKKGVKILTNTKVTAVEKND--DQVV-YENKGGETETLTGEKVLVAVGRKP  269 (461)
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCEEEEEEEeC--CEEE-EEEeCCcEEEEEeCEEEEecCCcc
Confidence            4577788888999999999999999998766  5543 5543 4  4789999999998643

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=91.84  E-value=0.7  Score=44.32  Aligned_cols=56  Identities=20%  Similarity=0.239  Sum_probs=44.0

Q ss_pred             chhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE-CCeEEecCEEEEeeChh
Q 019274           60 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS  118 (343)
Q Consensus        60 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~-~g~~~~ad~VV~a~p~~  118 (343)
                      ...+.+.+.+.+++.|+++++++.|++|..+++ + + .|.+ +++++++|.||++++..
T Consensus       206 d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~-~-~-~v~~~~g~~i~~D~viva~G~~  262 (446)
T TIGR01424       206 DDDMRALLARNMEGRGIRIHPQTSLTSITKTDD-G-L-KVTLSHGEEIVADVVLFATGRS  262 (446)
T ss_pred             CHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCC-e-E-EEEEcCCcEeecCEEEEeeCCC
Confidence            345677888889999999999999999986552 3 2 3555 36689999999999864

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK06184 hypothetical protein; Provisional

Probab=91.78  E-value=0.64  Score=45.35  Aligned_cols=55  Identities=18%  Similarity=0.091  Sum_probs=43.6

Q ss_pred             hhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE---C-CeEEecCEEEEeeChhhH
Q 019274           63 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---G-KETYSAGAVVLAVGISTL  120 (343)
Q Consensus        63 l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~---~-g~~~~ad~VV~a~p~~~~  120 (343)
                      +-+.|.+.+++.|++|+++++|++|..++  +.|+ +++   + +++++||.||-|.+..+.
T Consensus       111 le~~L~~~l~~~gv~i~~~~~v~~i~~~~--~~v~-v~~~~~~~~~~i~a~~vVgADG~~S~  169 (502)
T PRK06184        111 TERILRERLAELGHRVEFGCELVGFEQDA--DGVT-ARVAGPAGEETVRARYLVGADGGRSF  169 (502)
T ss_pred             HHHHHHHHHHHCCCEEEeCcEEEEEEEcC--CcEE-EEEEeCCCeEEEEeCEEEECCCCchH
Confidence            45677788888899999999999998876  3443 333   3 468999999999999875

>PRK14727 putative mercuric reductase; Provisional

Probab=91.77  E-value=0.59  Score=45.29  Aligned_cols=56  Identities=14%  Similarity=0.192  Sum_probs=44.8

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhh
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST  119 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~  119 (343)
                      ..+.+.+.+.+++.|++|+++++|++|..++  +.+ .+.++++++.+|.||++++...
T Consensus       228 ~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~--~~~-~v~~~~g~i~aD~VlvA~G~~p  283 (479)
T PRK14727        228 PLLGETLTACFEKEGIEVLNNTQASLVEHDD--NGF-VLTTGHGELRAEKLLISTGRHA  283 (479)
T ss_pred             HHHHHHHHHHHHhCCCEEEcCcEEEEEEEeC--CEE-EEEEcCCeEEeCEEEEccCCCC
Confidence            4467788888999999999999999998765  433 3555555789999999998754

>TIGR01810 betA choline dehydrogenase

Probab=91.75  E-value=0.29  Score=48.15  Aligned_cols=50  Identities=18%  Similarity=0.164  Sum_probs=40.2

Q ss_pred             HcCCeEEcceeeeEEEecCCCCeEEEEEEC--Ce---EEecCEEEEeeChhhHHHhh
Q 019274           73 TRGCEFLDGRRVTDFIYDEERCCISDVVCG--KE---TYSAGAVVLAVGISTLQELI  124 (343)
Q Consensus        73 ~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~--g~---~~~ad~VV~a~p~~~~~~Ll  124 (343)
                      +.+.+|++++.|++|..++  +++++|++.  ++   .+.++.||+|+++-.+.+||
T Consensus       206 r~nl~i~~~~~V~rI~~~~--~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~SP~LL  260 (532)
T TIGR01810       206 RPNLEVQTRAFVTKINFEG--NRATGVEFKKGGRKEHTEANKEVILSAGAINSPQLL  260 (532)
T ss_pred             CCCeEEEeCCEEEEEEecC--CeEEEEEEEeCCcEEEEEEeeeEEEccCCCCCHHHH
Confidence            4579999999999999986  888999873  32   34789999999986666654

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=91.68  E-value=0.6  Score=48.52  Aligned_cols=62  Identities=10%  Similarity=0.111  Sum_probs=46.5

Q ss_pred             hhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhHHHhh
Q 019274           62 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQELI  124 (343)
Q Consensus        62 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~~~Ll  124 (343)
                      ...+.+.+.++++|++|++++.|++|..+++ +.+..|..+ |+++.+|.||++++...-..|+
T Consensus       188 ~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~-~~~~~v~~~dG~~i~~D~Vv~A~G~rPn~~L~  250 (847)
T PRK14989        188 MGGEQLRRKIESMGVRVHTSKNTLEIVQEGV-EARKTMRFADGSELEVDFIVFSTGIRPQDKLA  250 (847)
T ss_pred             HHHHHHHHHHHHCCCEEEcCCeEEEEEecCC-CceEEEEECCCCEEEcCEEEECCCcccCchHH
Confidence            3556788889999999999999999976542 334456664 6789999999999865433343

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=91.60  E-value=0.7  Score=37.34  Aligned_cols=40  Identities=33%  Similarity=0.339  Sum_probs=30.1

Q ss_pred             CCeEE-cceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeCh
Q 019274           75 GCEFL-DGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGI  117 (343)
Q Consensus        75 G~~i~-~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~  117 (343)
                      |++|. ...+|+.|...++ +  +.|.+. |..+.||+||+|++.
T Consensus       114 ~i~v~~~~~~V~~i~~~~~-~--~~v~~~~g~~~~~d~VvLa~Gh  155 (156)
T PF13454_consen  114 GITVRHVRAEVVDIRRDDD-G--YRVVTADGQSIRADAVVLATGH  155 (156)
T ss_pred             CcEEEEEeeEEEEEEEcCC-c--EEEEECCCCEEEeCEEEECCCC
Confidence            55554 6789999998874 4  345555 678899999999974

>PRK06753 hypothetical protein; Provisional

Probab=91.45  E-value=12  Score=34.73  Aligned_cols=54  Identities=13%  Similarity=0.135  Sum_probs=39.3

Q ss_pred             hhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhHH
Q 019274           63 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQ  121 (343)
Q Consensus        63 l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~~  121 (343)
                      |.+.|.+.++  ..+|+++++|++|..++  +.+ .|++. |+++++|.||-|-+..+..
T Consensus       100 l~~~L~~~~~--~~~i~~~~~v~~i~~~~--~~v-~v~~~~g~~~~~~~vigadG~~S~v  154 (373)
T PRK06753        100 LIDIIKSYVK--EDAIFTGKEVTKIENET--DKV-TIHFADGESEAFDLCIGADGIHSKV  154 (373)
T ss_pred             HHHHHHHhCC--CceEEECCEEEEEEecC--CcE-EEEECCCCEEecCEEEECCCcchHH
Confidence            4455554443  46899999999998766  544 46554 6788999999999987643

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=91.44  E-value=0.69  Score=44.67  Aligned_cols=55  Identities=18%  Similarity=0.146  Sum_probs=43.6

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChh
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS  118 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~  118 (343)
                      ..+.+.+.+.++++|++|+++++|++|..++  +.+ .|.+. |+++++|.||++++..
T Consensus       218 ~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~--~~~-~v~~~~g~~l~~D~vl~a~G~~  273 (466)
T PRK07845        218 ADAAEVLEEVFARRGMTVLKRSRAESVERTG--DGV-VVTLTDGRTVEGSHALMAVGSV  273 (466)
T ss_pred             HHHHHHHHHHHHHCCcEEEcCCEEEEEEEeC--CEE-EEEECCCcEEEecEEEEeecCC
Confidence            4467778888999999999999999998655  444 35544 6789999999998764

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=91.38  E-value=0.94  Score=43.55  Aligned_cols=59  Identities=10%  Similarity=0.062  Sum_probs=45.2

Q ss_pred             CchhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-C-eEEecCEEEEeeChhh
Q 019274           59 LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-K-ETYSAGAVVLAVGIST  119 (343)
Q Consensus        59 ~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g-~~~~ad~VV~a~p~~~  119 (343)
                      +...+.+.+.+.+++.|+++++++.|++|..+++ +.+ .|.++ + +.+++|.||++++...
T Consensus       205 ~d~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~-~~~-~v~~~~g~~~i~~D~vi~a~G~~p  265 (450)
T TIGR01421       205 FDSMISETITEEYEKEGINVHKLSKPVKVEKTVE-GKL-VIHFEDGKSIDDVDELIWAIGRKP  265 (450)
T ss_pred             cCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEeCC-ceE-EEEECCCcEEEEcCEEEEeeCCCc
Confidence            3445778888889999999999999999986542 433 45554 5 5689999999998643

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=91.30  E-value=1  Score=44.87  Aligned_cols=58  Identities=26%  Similarity=0.206  Sum_probs=46.8

Q ss_pred             chhhhHHHHHHHHHc-CCeEEcceeeeEEEecCCCCeEEEEEE----CC--eEEecCEEEEeeChhh
Q 019274           60 REKIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC----GK--ETYSAGAVVLAVGIST  119 (343)
Q Consensus        60 ~~~l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~~g~v~~V~~----~g--~~~~ad~VV~a~p~~~  119 (343)
                      +..|.++|.+.+.+. |++++.++.|++|..++  |+|.||..    +|  ..+.|+.||+|++...
T Consensus       131 G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~--g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~  195 (580)
T TIGR01176       131 GFHMLHTLFQTSLTYPQIMRYDEWFVTDLLVDD--GRVCGLVAIEMAEGRLVTILADAVVLATGGAG  195 (580)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEeCeEEEEEEeeC--CEEEEEEEEEcCCCcEEEEecCEEEEcCCCCc
Confidence            356889999887664 78999999999999876  88888764    24  3578999999998755

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=91.27  E-value=0.58  Score=50.52  Aligned_cols=59  Identities=22%  Similarity=0.275  Sum_probs=45.4

Q ss_pred             hhhHHHHHHHHHc---CCeEEcceeeeEEEecCC---CC----eEEEEEEC------Ce--EEecCEEEEeeChhhH
Q 019274           62 KIFEPWMDSMRTR---GCEFLDGRRVTDFIYDEE---RC----CISDVVCG------KE--TYSAGAVVLAVGISTL  120 (343)
Q Consensus        62 ~l~~~l~~~l~~~---G~~i~~~~~V~~I~~~~~---~g----~v~~V~~~------g~--~~~ad~VV~a~p~~~~  120 (343)
                      .+++.|.+.+++.   |++|+++++|++|..+++   +|    +|+||...      |+  .+.|+.||+|++...-
T Consensus       545 ~i~~~l~~~~~~~~~~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~AkaVILATGGf~~  621 (1167)
T PTZ00306        545 TIMRTLEDHIRTKLSGRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLLADAVILATGGFSN  621 (1167)
T ss_pred             HHHHHHHHHHHhhccCCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEEEeceEEEecCCccc
Confidence            4778888887754   899999999999998641   02    78888753      32  5789999999998653

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=91.18  E-value=13  Score=37.56  Aligned_cols=53  Identities=21%  Similarity=0.155  Sum_probs=38.2

Q ss_pred             hhHHHHHHHHHcCC-eEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhHH
Q 019274           63 IFEPWMDSMRTRGC-EFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQ  121 (343)
Q Consensus        63 l~~~l~~~l~~~G~-~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~~  121 (343)
                      |.+.|.+.   .+. .++.+++|++|..++  ++|+ |++. |.++++|.||.|-+.+...
T Consensus       196 L~~~L~~a---lg~~~i~~g~~V~~I~~~~--d~Vt-V~~~dG~ti~aDlVVGADG~~S~v  250 (668)
T PLN02927        196 LQQILARA---VGEDVIRNESNVVDFEDSG--DKVT-VVLENGQRYEGDLLVGADGIWSKV  250 (668)
T ss_pred             HHHHHHhh---CCCCEEEcCCEEEEEEEeC--CEEE-EEECCCCEEEcCEEEECCCCCcHH
Confidence            44455443   344 478999999998876  5554 6554 6688999999999998753

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=91.17  E-value=0.86  Score=42.96  Aligned_cols=59  Identities=17%  Similarity=0.251  Sum_probs=44.0

Q ss_pred             hhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhHHHhh
Q 019274           62 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQELI  124 (343)
Q Consensus        62 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~~~Ll  124 (343)
                      .+.+.+.+.+++.|++|+++++|++|.. +  +.+ .|.+. |+++.+|.||++++...-..|+
T Consensus       187 ~~~~~l~~~l~~~GV~i~~~~~V~~i~~-~--~~~-~v~l~~g~~i~aD~Vv~a~G~~pn~~l~  246 (396)
T PRK09754        187 PVQRYLLQRHQQAGVRILLNNAIEHVVD-G--EKV-ELTLQSGETLQADVVIYGIGISANDQLA  246 (396)
T ss_pred             HHHHHHHHHHHHCCCEEEeCCeeEEEEc-C--CEE-EEEECCCCEEECCEEEECCCCChhhHHH
Confidence            3556677888899999999999999975 3  333 45554 6789999999999874433343

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=91.10  E-value=0.66  Score=44.74  Aligned_cols=57  Identities=18%  Similarity=-0.066  Sum_probs=44.9

Q ss_pred             hhhhHHHHHHHHHcCCe--EEcceeeeEEEecCCCCeEEEEEEC--C-e--EEecCEEEEeeChhhH
Q 019274           61 EKIFEPWMDSMRTRGCE--FLDGRRVTDFIYDEERCCISDVVCG--K-E--TYSAGAVVLAVGISTL  120 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~--i~~~~~V~~I~~~~~~g~v~~V~~~--g-~--~~~ad~VV~a~p~~~~  120 (343)
                      ..+.+.|.+++++.|.+  |+++++|++|...+  ++ |.|++.  + .  +..+|+||+|++....
T Consensus       111 ~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~--~~-w~V~~~~~~~~~~~~~~d~VIvAtG~~~~  174 (461)
T PLN02172        111 REVLAYLQDFAREFKIEEMVRFETEVVRVEPVD--GK-WRVQSKNSGGFSKDEIFDAVVVCNGHYTE  174 (461)
T ss_pred             HHHHHHHHHHHHHcCCcceEEecCEEEEEeecC--Ce-EEEEEEcCCCceEEEEcCEEEEeccCCCC
Confidence            45889999999999987  99999999998876  54 566653  2 1  4579999999997543

>PRK08163 salicylate hydroxylase; Provisional

Probab=91.04  E-value=0.78  Score=43.05  Aligned_cols=56  Identities=14%  Similarity=0.214  Sum_probs=43.9

Q ss_pred             hhHHHHHHHHHcC-CeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhHH
Q 019274           63 IFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQ  121 (343)
Q Consensus        63 l~~~l~~~l~~~G-~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~~  121 (343)
                      |.+.|.+.+.+.| ++++.+++|+++..++  +.+. |.+. |++++||.||.|.+.+...
T Consensus       111 l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~--~~v~-v~~~~g~~~~ad~vV~AdG~~S~~  168 (396)
T PRK08163        111 IHLSLLEAVLDHPLVEFRTSTHVVGIEQDG--DGVT-VFDQQGNRWTGDALIGCDGVKSVV  168 (396)
T ss_pred             HHHHHHHHHHhcCCcEEEeCCEEEEEecCC--CceE-EEEcCCCEEecCEEEECCCcChHH
Confidence            5677888777665 8999999999998766  4443 5554 6689999999999988754

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=90.93  E-value=0.95  Score=43.70  Aligned_cols=55  Identities=16%  Similarity=0.285  Sum_probs=42.7

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE---CC--eEEecCEEEEeeChh
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---GK--ETYSAGAVVLAVGIS  118 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~---~g--~~~~ad~VV~a~p~~  118 (343)
                      ..+.+.+.+.++++|++|+++++|++|..++  +.+ .+++   +|  .++++|.||++++..
T Consensus       213 ~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~--~~~-~v~~~~~~g~~~~i~~D~vi~a~G~~  272 (466)
T PRK07818        213 AEVSKEIAKQYKKLGVKILTGTKVESIDDNG--SKV-TVTVSKKDGKAQELEADKVLQAIGFA  272 (466)
T ss_pred             HHHHHHHHHHHHHCCCEEEECCEEEEEEEeC--CeE-EEEEEecCCCeEEEEeCEEEECcCcc
Confidence            4477888999999999999999999998654  433 2333   34  378999999999863

>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=90.88  E-value=0.64  Score=42.60  Aligned_cols=84  Identities=14%  Similarity=0.146  Sum_probs=59.5

Q ss_pred             ccccHHHHHHHHHHHH--HhcCCCceeEeecCCCchhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeE
Q 019274           28 EQCSAAATLGILYFII--LAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKET  105 (343)
Q Consensus        28 ~~~sa~~~~~~l~~~~--~~~~~~~~~~~~~gG~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~  105 (343)
                      -+.++..++..+..|+  ++..+.+...||+-|+++ |++.+++...-.||+..+|+++.+|....  . |.+|..+..+
T Consensus       195 l~~p~re~~erIl~Y~~Sf~~yg~~pyLyp~YGl~E-l~QGFaRssav~GgtymLn~~i~ein~tk--~-v~~v~~~~~~  270 (434)
T COG5044         195 LDIPAREALERILRYMRSFGDYGKSPYLYPRYGLGE-LSQGFARSSAVYGGTYMLNQAIDEINETK--D-VETVDKGSLT  270 (434)
T ss_pred             ccCCchHHHHHHHHHHHhhcccCCCcceeeccCchh-hhHHHHHhhhccCceeecCcchhhhcccc--c-eeeeecCcce
Confidence            4555666666555553  123344567789988665 99999999878899999999999998755  2 3345444567


Q ss_pred             EecCEEEEee
Q 019274          106 YSAGAVVLAV  115 (343)
Q Consensus       106 ~~ad~VV~a~  115 (343)
                      ..|..||+.-
T Consensus       271 ~ka~KiI~~~  280 (434)
T COG5044         271 QKAGKIISSP  280 (434)
T ss_pred             eecCcccCCc
Confidence            8888888654

>PRK13748 putative mercuric reductase; Provisional

Probab=90.85  E-value=0.79  Score=45.38  Aligned_cols=56  Identities=18%  Similarity=0.226  Sum_probs=44.8

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhh
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST  119 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~  119 (343)
                      ..+.+.+.+.+++.|++|++++.|++|..++  +.+ .+.++++++++|.||++++...
T Consensus       310 ~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~--~~~-~v~~~~~~i~~D~vi~a~G~~p  365 (561)
T PRK13748        310 PAIGEAVTAAFRAEGIEVLEHTQASQVAHVD--GEF-VLTTGHGELRADKLLVATGRAP  365 (561)
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEEEEecC--CEE-EEEecCCeEEeCEEEEccCCCc
Confidence            4577888889999999999999999998765  543 3555555799999999998643

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=90.73  E-value=0.91  Score=45.02  Aligned_cols=54  Identities=20%  Similarity=0.218  Sum_probs=42.9

Q ss_pred             hhHHHHHHHHHc-CCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhh
Q 019274           63 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST  119 (343)
Q Consensus        63 l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~  119 (343)
                      +...|.+.+++. |+++ +.+.|++|..++  ++|.+|.+. |..+.|+.||.|++...
T Consensus       102 y~kaL~e~L~~~~nV~I-~q~~V~~Li~e~--grV~GV~t~dG~~I~Ak~VIlATGTFL  157 (618)
T PRK05192        102 YRAAMREILENQPNLDL-FQGEVEDLIVEN--GRVVGVVTQDGLEFRAKAVVLTTGTFL  157 (618)
T ss_pred             HHHHHHHHHHcCCCcEE-EEeEEEEEEecC--CEEEEEEECCCCEEECCEEEEeeCcch
Confidence            556777777766 6777 467899998887  788899887 66899999999999643

>PLN02815 L-aspartate oxidase

Probab=90.70  E-value=0.75  Score=45.81  Aligned_cols=58  Identities=12%  Similarity=0.229  Sum_probs=45.2

Q ss_pred             hhhhHHHHHHHHHc-CCeEEcceeeeEEEecCCCC---eEEEEEE----CCe--EEecCEEEEeeChhh
Q 019274           61 EKIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERC---CISDVVC----GKE--TYSAGAVVLAVGIST  119 (343)
Q Consensus        61 ~~l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~~g---~v~~V~~----~g~--~~~ad~VV~a~p~~~  119 (343)
                      ..+.++|.+.+++. |++|+.++.+++|..+++ |   +|.||..    +|.  .+.|+.||+|++...
T Consensus       155 ~~i~~~L~~~~~~~~~i~i~~~~~~~~Li~~~~-g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g  222 (594)
T PLN02815        155 REIERALLEAVKNDPNITFFEHHFAIDLLTSQD-GGSIVCHGADVLDTRTGEVVRFISKVTLLASGGAG  222 (594)
T ss_pred             HHHHHHHHHHHHhcCCCEEEeceEhheeeeecC-CCccEEEEEEEEEcCCCeEEEEEeceEEEcCCcce
Confidence            45888998888765 899999999999998643 4   3778865    243  568999999999754

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=90.62  E-value=1.1  Score=44.57  Aligned_cols=59  Identities=19%  Similarity=0.299  Sum_probs=45.7

Q ss_pred             chhhhHHHHHHHHHcC----CeEEcceeeeEEEecCCCCeEEEEEEC----Ce--EEecCEEEEeeChhh
Q 019274           60 REKIFEPWMDSMRTRG----CEFLDGRRVTDFIYDEERCCISDVVCG----KE--TYSAGAVVLAVGIST  119 (343)
Q Consensus        60 ~~~l~~~l~~~l~~~G----~~i~~~~~V~~I~~~~~~g~v~~V~~~----g~--~~~ad~VV~a~p~~~  119 (343)
                      +..|.+.|.+.+++.+    ++|+.++.++++..+++ |+|.||...    ++  .+.|+.||+|++...
T Consensus       132 G~~i~~~L~~~~~~~~~~~~i~i~~~~~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~  200 (589)
T PRK08641        132 GQQLLYALDEQVRRYEVAGLVTKYEGWEFLGAVLDDE-GVCRGIVAQDLFTMEIESFPADAVIMATGGPG  200 (589)
T ss_pred             HHHHHHHHHHHHHhhhccCCcEEEeeEEEEEEEECCC-CEEEEEEEEECCCCcEEEEECCEEEECCCCCc
Confidence            3458888888776654    67999999999998644 889988752    33  468999999998765

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=90.61  E-value=0.95  Score=43.57  Aligned_cols=57  Identities=28%  Similarity=0.296  Sum_probs=44.0

Q ss_pred             hhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhH
Q 019274           62 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTL  120 (343)
Q Consensus        62 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~  120 (343)
                      .+-+.|.+.+++.|++++.++ |.++..+++ |.|+.|+++ |++++||.||=|++....
T Consensus       155 ~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~-g~i~~v~~~~g~~i~ad~~IDASG~~s~  212 (454)
T PF04820_consen  155 KFDQFLRRHAEERGVEVIEGT-VVDVELDED-GRITAVRLDDGRTIEADFFIDASGRRSL  212 (454)
T ss_dssp             HHHHHHHHHHHHTT-EEEET--EEEEEE-TT-SEEEEEEETTSEEEEESEEEE-SGGG-C
T ss_pred             HHHHHHHHHHhcCCCEEEeCE-EEEEEEcCC-CCEEEEEECCCCEEEEeEEEECCCccch
Confidence            477788888899999999885 788877765 888899986 678999999999998664

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=90.51  E-value=1.2  Score=44.42  Aligned_cols=57  Identities=19%  Similarity=0.225  Sum_probs=45.6

Q ss_pred             hhhhHHHHHHHHHc-CCeEEcceeeeEEEecCCCCeEEEEEE----CCe--EEecCEEEEeeChhh
Q 019274           61 EKIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST  119 (343)
Q Consensus        61 ~~l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~~g~v~~V~~----~g~--~~~ad~VV~a~p~~~  119 (343)
                      ..|.++|.+.+.+. +++++.++.|++|..++  |+|.||..    +++  .+.|+.||+|++...
T Consensus       133 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~--g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~  196 (582)
T PRK09231        133 FHMLHTLFQTSLKYPQIQRFDEHFVLDILVDD--GHVRGLVAMNMMEGTLVQIRANAVVMATGGAG  196 (582)
T ss_pred             HHHHHHHHHHhhcCCCcEEEeCeEEEEEEEeC--CEEEEEEEEEcCCCcEEEEECCEEEECCCCCc
Confidence            45888888877665 78999999999999876  88887754    242  678999999998755

>PRK06370 mercuric reductase; Validated

Probab=90.32  E-value=1.1  Score=43.24  Aligned_cols=57  Identities=12%  Similarity=0.180  Sum_probs=42.2

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC--CeEEecCEEEEeeChh
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KETYSAGAVVLAVGIS  118 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~--g~~~~ad~VV~a~p~~  118 (343)
                      ..+.+.+.+.+++.|++|+++++|.+|..+++ +....+...  +.++++|.||++++..
T Consensus       212 ~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~-~~~v~~~~~~~~~~i~~D~Vi~A~G~~  270 (463)
T PRK06370        212 EDVAAAVREILEREGIDVRLNAECIRVERDGD-GIAVGLDCNGGAPEITGSHILVAVGRV  270 (463)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCC-EEEEEEEeCCCceEEEeCEEEECcCCC
Confidence            34677888889999999999999999987652 321222222  3578999999999864

>PRK09897 hypothetical protein; Provisional

Probab=90.29  E-value=1  Score=44.23  Aligned_cols=52  Identities=17%  Similarity=0.186  Sum_probs=38.6

Q ss_pred             hhHHHHHHHHHcC--CeEEcceeeeEEEecCCCCeEEEEEEC--CeEEecCEEEEeeCh
Q 019274           63 IFEPWMDSMRTRG--CEFLDGRRVTDFIYDEERCCISDVVCG--KETYSAGAVVLAVGI  117 (343)
Q Consensus        63 l~~~l~~~l~~~G--~~i~~~~~V~~I~~~~~~g~v~~V~~~--g~~~~ad~VV~a~p~  117 (343)
                      ..+.+.+.+++.|  ++|+.+++|++|..++  +. +.|.++  +..+.||.||+|++.
T Consensus       109 ~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~--~g-~~V~t~~gg~~i~aD~VVLAtGh  164 (534)
T PRK09897        109 QFLRLVDQARQQKFAVAVYESCQVTDLQITN--AG-VMLATNQDLPSETFDLAVIATGH  164 (534)
T ss_pred             HHHHHHHHHHHcCCeEEEEECCEEEEEEEeC--CE-EEEEECCCCeEEEcCEEEECCCC
Confidence            4444555566666  6888999999998876  44 346664  367899999999986

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=90.26  E-value=1.1  Score=40.06  Aligned_cols=54  Identities=24%  Similarity=0.316  Sum_probs=43.6

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChh
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS  118 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~  118 (343)
                      ..+.+.+.+.+++.|+++++ +.|++|..++  +. +.|.+. +.++++|+||+|++..
T Consensus        57 ~~~~~~l~~~~~~~gv~~~~-~~v~~v~~~~--~~-~~v~~~~~~~~~~d~liiAtG~~  111 (300)
T TIGR01292        57 PELMEKMKEQAVKFGAEIIY-EEVIKVDLSD--RP-FKVKTGDGKEYTAKAVIIATGAS  111 (300)
T ss_pred             HHHHHHHHHHHHHcCCeEEE-EEEEEEEecC--Ce-eEEEeCCCCEEEeCEEEECCCCC
Confidence            34778888888999999999 8999998765  43 456665 5689999999999974

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=90.17  E-value=1.2  Score=42.93  Aligned_cols=56  Identities=14%  Similarity=0.143  Sum_probs=43.0

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECC--eEEecCEEEEeeChhh
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGK--ETYSAGAVVLAVGIST  119 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g--~~~~ad~VV~a~p~~~  119 (343)
                      ..+.+.+.+.+++.|++|++++.|++|..++  +.+ .+..++  .++++|.||++++...
T Consensus       211 ~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~--~~v-~~~~~g~~~~i~~D~vivA~G~~p  268 (458)
T PRK06912        211 EDIAHILREKLENDGVKIFTGAALKGLNSYK--KQA-LFEYEGSIQEVNAEFVLVSVGRKP  268 (458)
T ss_pred             HHHHHHHHHHHHHCCCEEEECCEEEEEEEcC--CEE-EEEECCceEEEEeCEEEEecCCcc
Confidence            4477888888999999999999999997654  433 344444  3689999999998643

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=90.13  E-value=1.2  Score=43.16  Aligned_cols=55  Identities=11%  Similarity=0.227  Sum_probs=42.8

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE-C--C--eEEecCEEEEeeChh
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-G--K--ETYSAGAVVLAVGIS  118 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~-~--g--~~~~ad~VV~a~p~~  118 (343)
                      ..+.+.+.+.+++.|++|+++++|++|..++  +.+ .+.. +  |  +++++|.||++++..
T Consensus       224 ~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~--~~v-~v~~~~~~g~~~~i~~D~vl~a~G~~  283 (475)
T PRK06327        224 EQVAKEAAKAFTKQGLDIHLGVKIGEIKTGG--KGV-SVAYTDADGEAQTLEVDKLIVSIGRV  283 (475)
T ss_pred             HHHHHHHHHHHHHcCcEEEeCcEEEEEEEcC--CEE-EEEEEeCCCceeEEEcCEEEEccCCc
Confidence            4577888888999999999999999998765  444 3443 2  3  468999999999864

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=90.01  E-value=1  Score=44.05  Aligned_cols=55  Identities=13%  Similarity=0.216  Sum_probs=45.1

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChh
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS  118 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~  118 (343)
                      ..+.+.+.+.+++.|++++++++|++|..++  +. +.|.+. +..+++|.+|+|++..
T Consensus       267 ~~l~~~l~~~l~~~gv~i~~~~~V~~I~~~~--~~-~~v~~~~g~~i~~d~lIlAtGa~  322 (515)
T TIGR03140       267 SQLAANLEEHIKQYPIDLMENQRAKKIETED--GL-IVVTLESGEVLKAKSVIVATGAR  322 (515)
T ss_pred             HHHHHHHHHHHHHhCCeEEcCCEEEEEEecC--Ce-EEEEECCCCEEEeCEEEECCCCC
Confidence            3477888899999999999999999998765  43 456665 5689999999999985

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>TIGR02462 pyranose_ox pyranose oxidase

Probab=89.78  E-value=0.86  Score=44.74  Aligned_cols=62  Identities=18%  Similarity=0.202  Sum_probs=42.7

Q ss_pred             hhHHHHHHHHHcCCeEEcceeeeEEEecCCC-CeEEEEEE----CCe--EEecCEEEEeeChhhHHHhh
Q 019274           63 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEER-CCISDVVC----GKE--TYSAGAVVLAVGISTLQELI  124 (343)
Q Consensus        63 l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~-g~v~~V~~----~g~--~~~ad~VV~a~p~~~~~~Ll  124 (343)
                      |..++.+.++....+|++++.|++|..+.++ ++|.+|++    +++  +++|+.||+|+++-.+.+||
T Consensus       216 ~~~~~~~~~~~~n~~l~~~a~v~~i~~d~~~~~~v~~v~~~d~~~g~~~~v~A~~vVLAagaIetpRLL  284 (544)
T TIGR02462       216 FDLQPNDDAPSERFTLLTNHRCTRLVRNETNESEIEAALVRDLLSGDRFEIKADVYVLACGAVHNPQIL  284 (544)
T ss_pred             hhhhhhhhccCCCEEEEcCCEEEEEEeCCCCCceeEEEEEEECCCCcEEEEECCEEEEccCchhhHHHH
Confidence            3344433333333899999999999987542 36777744    233  57999999999987777654

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>TIGR02053 MerA mercuric reductase

Probab=89.77  E-value=1.4  Score=42.51  Aligned_cols=55  Identities=13%  Similarity=0.148  Sum_probs=42.3

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC----CeEEecCEEEEeeChh
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG----KETYSAGAVVLAVGIS  118 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~----g~~~~ad~VV~a~p~~  118 (343)
                      ..+.+.+.+.+++.|++++++++|++|..++  +. ..+.+.    ++++++|.||++++..
T Consensus       207 ~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~--~~-~~v~~~~~~~~~~i~~D~ViiA~G~~  265 (463)
T TIGR02053       207 PEISAAVEEALAEEGIEVVTSAQVKAVSVRG--GG-KIITVEKPGGQGEVEADELLVATGRR  265 (463)
T ss_pred             HHHHHHHHHHHHHcCCEEEcCcEEEEEEEcC--CE-EEEEEEeCCCceEEEeCEEEEeECCC
Confidence            4467788888999999999999999998765  33 234432    2579999999999853

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=89.76  E-value=1.2  Score=43.70  Aligned_cols=55  Identities=15%  Similarity=0.193  Sum_probs=45.6

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChh
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS  118 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~  118 (343)
                      ..+.+.+.+.+++.|.+++++++|++|..++  +. +.|.+. +.++++|.||+|++..
T Consensus       266 ~~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~--~~-~~V~~~~g~~i~a~~vViAtG~~  321 (517)
T PRK15317        266 PKLAAALEEHVKEYDVDIMNLQRASKLEPAA--GL-IEVELANGAVLKAKTVILATGAR  321 (517)
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEEEEecC--Ce-EEEEECCCCEEEcCEEEECCCCC
Confidence            3578899999999999999999999998865  33 456665 5689999999999984

>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=89.72  E-value=0.72  Score=41.56  Aligned_cols=56  Identities=21%  Similarity=0.237  Sum_probs=44.1

Q ss_pred             hhHHHHHHHHHcC------CeEEcceeeeEEEecCCCCeEEEEEEC---C--eEEecCEEEEeeChhhH
Q 019274           63 IFEPWMDSMRTRG------CEFLDGRRVTDFIYDEERCCISDVVCG---K--ETYSAGAVVLAVGISTL  120 (343)
Q Consensus        63 l~~~l~~~l~~~G------~~i~~~~~V~~I~~~~~~g~v~~V~~~---g--~~~~ad~VV~a~p~~~~  120 (343)
                      |+.+|.+.+++.-      ++|.++++|..|...+  |+|.+|+.-   |  ..+.++.||+|++....
T Consensus       141 i~~~L~~~l~k~as~~pe~~ki~~nskvv~il~n~--gkVsgVeymd~sgek~~~~~~~VVlatGGf~y  207 (477)
T KOG2404|consen  141 IVKALSTRLKKKASENPELVKILLNSKVVDILRNN--GKVSGVEYMDASGEKSKIIGDAVVLATGGFGY  207 (477)
T ss_pred             HHHHHHHHHHHhhhcChHHHhhhhcceeeeeecCC--CeEEEEEEEcCCCCccceecCceEEecCCcCc
Confidence            6677777665432      5899999999999666  899999873   3  36789999999998765

>COG4716 Myosin-crossreactive antigen [Function unknown]

Probab=89.70  E-value=1.2  Score=41.11  Aligned_cols=77  Identities=17%  Similarity=0.160  Sum_probs=51.8

Q ss_pred             HHHhhhcCCcccccHHHHHHHHHHHHHh--c-CCCceeEeecCCCchhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCC
Q 019274           18 LVQVGLFAPAEQCSAAATLGILYFIILA--H-QKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERC   94 (343)
Q Consensus        18 ~~~~~~~~~~~~~sa~~~~~~l~~~~~~--~-~~~~~~~~~~gG~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g   94 (343)
                      +.+.++++.....|+..+..++.+++..  . +..+.+.+-+-.-+++|+.+|..+|+++|+++.+++.|+.|..+...|
T Consensus       181 ~yW~tmFAFekWhSa~EmRRY~mRfihhi~gl~dfs~lkftkyNQYeSlvlPli~yL~~H~Vdf~~~~~Vedi~v~~t~g  260 (587)
T COG4716         181 YYWQTMFAFEKWHSAFEMRRYMMRFIHHISGLPDFSALKFTKYNQYESLVLPLITYLKSHGVDFTYDQKVEDIDVDDTPG  260 (587)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCCCcchhhcccccchHHHHHHHHHHHHHHcCCceEeccEEeeeeeccCcc
Confidence            3445566666778887777666555321  1 111122222333368899999999999999999999999999875324

>TIGR00136 gidA glucose-inhibited division protein A

Probab=89.66  E-value=1.1  Score=44.33  Aligned_cols=56  Identities=18%  Similarity=0.258  Sum_probs=42.7

Q ss_pred             hhhHHHHHHHHHc-CCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhh
Q 019274           62 KIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST  119 (343)
Q Consensus        62 ~l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~  119 (343)
                      .+.+.|.+.+++. |++++ ...|.++..+++ +++.+|.+. |..+.||.||+|++.+.
T Consensus        97 ~y~~~L~e~Le~~pgV~Il-e~~Vv~li~e~~-g~V~GV~t~~G~~I~Ad~VILATGtfL  154 (617)
T TIGR00136        97 LYRKAMRNALENQPNLSLF-QGEVEDLILEDN-DEIKGVVTQDGLKFRAKAVIITTGTFL  154 (617)
T ss_pred             HHHHHHHHHHHcCCCcEEE-EeEEEEEEEecC-CcEEEEEECCCCEEECCEEEEccCccc
Confidence            3556777778877 56665 557888876632 678899987 56899999999999984

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=89.51  E-value=1.5  Score=40.47  Aligned_cols=62  Identities=16%  Similarity=0.349  Sum_probs=49.3

Q ss_pred             CCCchhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC----C--eEEecCEEEEeeChhhH
Q 019274           57 GTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG----K--ETYSAGAVVLAVGISTL  120 (343)
Q Consensus        57 gG~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~----g--~~~~ad~VV~a~p~~~~  120 (343)
                      |+|-..+.++..+.|+..|.+++++++|+.+...+| |.| .|++.    +  +++++|.+.++++-.-.
T Consensus       248 ~~mD~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~d-g~v-~i~ve~ak~~k~~tle~DvlLVsiGRrP~  315 (506)
T KOG1335|consen  248 GVMDGEISKAFQRVLQKQGIKFKLGTKVTSATRNGD-GPV-EIEVENAKTGKKETLECDVLLVSIGRRPF  315 (506)
T ss_pred             cccCHHHHHHHHHHHHhcCceeEeccEEEEeeccCC-Cce-EEEEEecCCCceeEEEeeEEEEEccCccc
Confidence            555556899999999999999999999999999887 654 34442    2  47899999999976443

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=89.30  E-value=1.3  Score=42.21  Aligned_cols=61  Identities=21%  Similarity=0.249  Sum_probs=44.8

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhhHHHhhh
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIK  125 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~~~~Ll~  125 (343)
                      ..+.+.+.+.+++.|+++++++.|.+|..+   +++ .+..+|+++.+|.||++++...-..++.
T Consensus       179 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~---~~~-v~~~~g~~i~~D~vi~a~G~~p~~~~l~  239 (427)
T TIGR03385       179 EEMNQIVEEELKKHEINLRLNEEVDSIEGE---ERV-KVFTSGGVYQADMVILATGIKPNSELAK  239 (427)
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCEEEEEecC---CCE-EEEcCCCEEEeCEEEECCCccCCHHHHH
Confidence            346777888899999999999999999753   333 2233477899999999998754333443

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PRK09077 L-aspartate oxidase; Provisional

Probab=89.20  E-value=1.8  Score=42.57  Aligned_cols=59  Identities=19%  Similarity=0.218  Sum_probs=45.6

Q ss_pred             hhhhHHHHHHHHHc-CCeEEcceeeeEEEecC----CCCeEEEEEEC----Ce--EEecCEEEEeeChhh
Q 019274           61 EKIFEPWMDSMRTR-GCEFLDGRRVTDFIYDE----ERCCISDVVCG----KE--TYSAGAVVLAVGIST  119 (343)
Q Consensus        61 ~~l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~----~~g~v~~V~~~----g~--~~~ad~VV~a~p~~~  119 (343)
                      ..+.+.|.+.+++. |++|+.++.|.++..++    ++|+|.+|...    ++  .+.|+.||+|++...
T Consensus       138 ~~i~~~L~~~~~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~  207 (536)
T PRK09077        138 KAVQTTLVERARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRAKFVVLATGGAS  207 (536)
T ss_pred             HHHHHHHHHHHHhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEecCeEEECCCCCC
Confidence            45788888888765 89999999999998753    11688888652    33  578999999998865

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=89.15  E-value=1.2  Score=42.66  Aligned_cols=58  Identities=22%  Similarity=0.192  Sum_probs=46.1

Q ss_pred             CCchhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-Ce--EEecCEEEEeeChh
Q 019274           58 TLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KE--TYSAGAVVLAVGIS  118 (343)
Q Consensus        58 G~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~--~~~ad~VV~a~p~~  118 (343)
                      ++-.-+.+.+.+.+++.|.+++++++|+++...+  +. ..+.++ ++  ++++|.|++|++-.
T Consensus       211 ~~D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~--~~-v~v~~~~g~~~~~~ad~vLvAiGR~  271 (454)
T COG1249         211 GEDPEISKELTKQLEKGGVKILLNTKVTAVEKKD--DG-VLVTLEDGEGGTIEADAVLVAIGRK  271 (454)
T ss_pred             cCCHHHHHHHHHHHHhCCeEEEccceEEEEEecC--Ce-EEEEEecCCCCEEEeeEEEEccCCc
Confidence            3446688999999999889999999999999877  33 345554 33  78999999999863

>PTZ00052 thioredoxin reductase; Provisional

Probab=89.13  E-value=1.4  Score=42.93  Aligned_cols=58  Identities=21%  Similarity=0.177  Sum_probs=45.3

Q ss_pred             chhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhH
Q 019274           60 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTL  120 (343)
Q Consensus        60 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~  120 (343)
                      ...+.+.+.+.+++.|+++++++.|++|...+  +.+ .|.+. |+++.+|.||++++...-
T Consensus       221 d~~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~--~~~-~v~~~~g~~i~~D~vl~a~G~~pn  279 (499)
T PTZ00052        221 DRQCSEKVVEYMKEQGTLFLEGVVPINIEKMD--DKI-KVLFSDGTTELFDTVLYATGRKPD  279 (499)
T ss_pred             CHHHHHHHHHHHHHcCCEEEcCCeEEEEEEcC--CeE-EEEECCCCEEEcCEEEEeeCCCCC
Confidence            34467888899999999999999999998655  333 35554 677899999999987543

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=89.11  E-value=1.2  Score=46.11  Aligned_cols=55  Identities=15%  Similarity=0.196  Sum_probs=43.6

Q ss_pred             hhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhh
Q 019274           62 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST  119 (343)
Q Consensus        62 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~  119 (343)
                      .+.+.+.+.++++|++|++++.|++|..+   +++.+|++. |+++++|.||++++...
T Consensus       183 ~~~~~l~~~l~~~GV~v~~~~~v~~i~~~---~~~~~v~~~dG~~i~~D~Vi~a~G~~P  238 (785)
T TIGR02374       183 TAGRLLQRELEQKGLTFLLEKDTVEIVGA---TKADRIRFKDGSSLEADLIVMAAGIRP  238 (785)
T ss_pred             HHHHHHHHHHHHcCCEEEeCCceEEEEcC---CceEEEEECCCCEEEcCEEEECCCCCc
Confidence            34566778889999999999999999743   345667765 67899999999998643

>PRK10262 thioredoxin reductase; Provisional

Probab=89.11  E-value=0.86  Score=41.52  Aligned_cols=56  Identities=16%  Similarity=0.261  Sum_probs=42.1

Q ss_pred             hhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-----C--eEEecCEEEEeeChhh
Q 019274           62 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-----K--ETYSAGAVVLAVGIST  119 (343)
Q Consensus        62 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-----g--~~~~ad~VV~a~p~~~  119 (343)
                      .+.+.+.+.+++.|+++++++.|++|.-++  +++.+|++.     +  +++.+|.||++++...
T Consensus       186 ~~~~~~~~~l~~~gV~i~~~~~v~~v~~~~--~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p  248 (321)
T PRK10262        186 ILIKRLMDKVENGNIILHTNRTLEEVTGDQ--MGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSP  248 (321)
T ss_pred             HHHHHHHhhccCCCeEEEeCCEEEEEEcCC--ccEEEEEEEEcCCCCeEEEEECCEEEEEeCCcc
Confidence            356777888889999999999999997654  445556542     1  3689999999988643

>PRK07538 hypothetical protein; Provisional

Probab=89.03  E-value=21  Score=33.77  Aligned_cols=58  Identities=19%  Similarity=0.192  Sum_probs=40.1

Q ss_pred             hhHHHHHHHHH-cCC-eEEcceeeeEEEecCCCCeEEEEEEC--C--eEEecCEEEEeeChhhHH
Q 019274           63 IFEPWMDSMRT-RGC-EFLDGRRVTDFIYDEERCCISDVVCG--K--ETYSAGAVVLAVGISTLQ  121 (343)
Q Consensus        63 l~~~l~~~l~~-~G~-~i~~~~~V~~I~~~~~~g~v~~V~~~--g--~~~~ad~VV~a~p~~~~~  121 (343)
                      |-+.|.+.+.+ .|. +|+++++|+++..+++ +.+..+...  |  .+++||.||-|-+..+..
T Consensus       104 l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~-~~~~~~~~~~~g~~~~~~adlvIgADG~~S~v  167 (413)
T PRK07538        104 LQMLLLDAVRERLGPDAVRTGHRVVGFEQDAD-VTVVFLGDRAGGDLVSVRGDVLIGADGIHSAV  167 (413)
T ss_pred             HHHHHHHHHHhhcCCcEEEcCCEEEEEEecCC-ceEEEEeccCCCccceEEeeEEEECCCCCHHH
Confidence            45566666654 464 6999999999987764 433333321  2  378999999999998753

>PTZ00058 glutathione reductase; Provisional

Probab=89.02  E-value=1.7  Score=43.08  Aligned_cols=56  Identities=16%  Similarity=0.186  Sum_probs=42.9

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE-CC-eEEecCEEEEeeChh
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK-ETYSAGAVVLAVGIS  118 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~-~g-~~~~ad~VV~a~p~~  118 (343)
                      ..+.+.+.+.+++.|++|++++.|.+|..+++ +.+. +.. ++ +++++|.||++++..
T Consensus       278 ~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~-~~v~-v~~~~~~~~i~aD~VlvA~Gr~  335 (561)
T PTZ00058        278 ETIINELENDMKKNNINIITHANVEEIEKVKE-KNLT-IYLSDGRKYEHFDYVIYCVGRS  335 (561)
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEEEEEEecCC-CcEE-EEECCCCEEEECCEEEECcCCC
Confidence            45778888899999999999999999986542 3333 333 33 579999999999864

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=88.97  E-value=1.8  Score=41.85  Aligned_cols=58  Identities=16%  Similarity=0.231  Sum_probs=43.2

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE-CC--eEEecCEEEEeeChhh
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK--ETYSAGAVVLAVGIST  119 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~-~g--~~~~ad~VV~a~p~~~  119 (343)
                      ..+.+.+.+.+++.|++|++++.|++|..+.+ +++..+.. +|  .++++|.||++++...
T Consensus       221 ~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~-~~~~~~~~~~g~~~~i~~D~vi~a~G~~p  281 (472)
T PRK05976        221 AELSKEVARLLKKLGVRVVTGAKVLGLTLKKD-GGVLIVAEHNGEEKTLEADKVLVSVGRRP  281 (472)
T ss_pred             HHHHHHHHHHHHhcCCEEEeCcEEEEEEEecC-CCEEEEEEeCCceEEEEeCEEEEeeCCcc
Confidence            44678888889999999999999999986211 33443433 34  3689999999998754

>KOG2853 consensus Possible oxidoreductase [General function prediction only]

Probab=88.95  E-value=10  Score=34.68  Aligned_cols=80  Identities=21%  Similarity=0.267  Sum_probs=49.2

Q ss_pred             CCHHHHHHHHHHHHhhhcccCCCCceeeeEEEecCCCccccCCCCCCCCCC--CCCCCCCeEEeeccccCCCCCccchHH
Q 019274          208 LKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMR--GFTSFPNLFMAGDWITTRHGSWSQERS  285 (343)
Q Consensus       208 ~~~~e~~~~~~~~L~~~~p~~~~~~~~~~~~~r~~~~~~~~~~g~~~~~p~--~~~~~~~L~laGd~~~~g~~~~~~ega  285 (343)
                      .+.+...+.++-.|....|.+..+++...    |...+   ..+.+...+-  ...-+.|||++-..  .|||   +.-+
T Consensus       401 VD~d~F~qkiwP~L~nRVP~fetakVqsa----WaGyy---D~NtfD~ngViG~HP~y~Nly~atGF--sghG---vqqs  468 (509)
T KOG2853|consen  401 VDHDYFYQKIWPHLANRVPAFETAKVQSA----WAGYY---DHNTFDDNGVIGEHPLYTNLYMATGF--SGHG---VQQS  468 (509)
T ss_pred             cChHHHHhhhhHHHHhcccccceeeeeeh----hcccc---cccccccCCcccCCcceeeeeeeecc--cccc---hhcc
Confidence            44566788999999999999976555332    43221   1111111111  11235799998655  3554   4567


Q ss_pred             HHHHHHHHHHHHHH
Q 019274          286 YVTGLEAANRVVDY  299 (343)
Q Consensus       286 ~~Sg~~aA~~il~~  299 (343)
                      ...|+..|+.|++.
T Consensus       469 ~avgRAiaElIldG  482 (509)
T KOG2853|consen  469 PAVGRAIAELILDG  482 (509)
T ss_pred             hHHHHHHHHHHhcC
Confidence            78899999999874

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=88.94  E-value=1.1  Score=42.57  Aligned_cols=51  Identities=20%  Similarity=0.262  Sum_probs=41.1

Q ss_pred             chhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeCh
Q 019274           60 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGI  117 (343)
Q Consensus        60 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~  117 (343)
                      ...+.+.+.+.++++|++|+++++|+++.  +  +.   |.++ |+++++|.||++++.
T Consensus       227 ~~~~~~~~~~~L~~~gV~v~~~~~v~~v~--~--~~---v~~~~g~~i~~d~vi~~~G~  278 (424)
T PTZ00318        227 DQALRKYGQRRLRRLGVDIRTKTAVKEVL--D--KE---VVLKDGEVIPTGLVVWSTGV  278 (424)
T ss_pred             CHHHHHHHHHHHHHCCCEEEeCCeEEEEe--C--CE---EEECCCCEEEccEEEEccCC
Confidence            45578888899999999999999999985  3  32   3344 678999999999874

>PLN02661 Putative thiazole synthesis

Probab=88.80  E-value=1.8  Score=39.94  Aligned_cols=54  Identities=17%  Similarity=0.200  Sum_probs=41.9

Q ss_pred             hhhHHHHHHHH-HcCCeEEcceeeeEEEecCCCCeEEEEEEC---------C------eEEecCEEEEeeCh
Q 019274           62 KIFEPWMDSMR-TRGCEFLDGRRVTDFIYDEERCCISDVVCG---------K------ETYSAGAVVLAVGI  117 (343)
Q Consensus        62 ~l~~~l~~~l~-~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~---------g------~~~~ad~VV~a~p~  117 (343)
                      .+...|.+.+. +.|++|+.++.|.++..++  +++.||.++         +      ..++|+.||+|++.
T Consensus       173 e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~--grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh  242 (357)
T PLN02661        173 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKG--DRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGH  242 (357)
T ss_pred             HHHHHHHHHHHhcCCCEEEeCeEeeeEEecC--CEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCC
Confidence            35567777554 4689999999999999887  788888741         1      25799999999983

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=88.74  E-value=1.9  Score=43.12  Aligned_cols=59  Identities=15%  Similarity=0.217  Sum_probs=45.9

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCC-CeEEEEEE----CCe--EEecCEEEEeeChhh
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEER-CCISDVVC----GKE--TYSAGAVVLAVGIST  119 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~-g~v~~V~~----~g~--~~~ad~VV~a~p~~~  119 (343)
                      ..+...+.+.+++.+++|+.++.|++|..++++ |+|+||..    +++  .+.|+.||+|++...
T Consensus       126 ~~~~r~l~~~l~~~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~AkaVVLATGG~~  191 (614)
T TIGR02061       126 ESYKPIVAEAAKNALGDIFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKAKTVIVAAGGAV  191 (614)
T ss_pred             hhHHHHHHHHHHhCCCeEEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEECCEEEECCCccc
Confidence            457777777787777899999999999986421 58888865    243  578999999999864

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>PRK02106 choline dehydrogenase; Validated

Probab=88.67  E-value=0.58  Score=46.36  Aligned_cols=50  Identities=10%  Similarity=0.129  Sum_probs=40.4

Q ss_pred             HcCCeEEcceeeeEEEecCCCCeEEEEEEC--Ce---EEecCEEEEeeChhhHHHhh
Q 019274           73 TRGCEFLDGRRVTDFIYDEERCCISDVVCG--KE---TYSAGAVVLAVGISTLQELI  124 (343)
Q Consensus        73 ~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~--g~---~~~ad~VV~a~p~~~~~~Ll  124 (343)
                      +.+.+|++++.|++|..++  +++++|++.  +.   .+.++.||+|+++-.+.+||
T Consensus       213 ~~nl~i~~~a~V~rI~~~~--~~a~GV~~~~~~~~~~~~~ak~VILaaGai~TP~LL  267 (560)
T PRK02106        213 RPNLTIVTHALTDRILFEG--KRAVGVEYERGGGRETARARREVILSAGAINSPQLL  267 (560)
T ss_pred             CCCcEEEcCCEEEEEEEeC--CeEEEEEEEeCCcEEEEEeeeeEEEccCCCCCHHHH
Confidence            4568999999999999986  788898873  22   35789999999988776654

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=88.58  E-value=0.93  Score=42.76  Aligned_cols=40  Identities=25%  Similarity=0.247  Sum_probs=34.4

Q ss_pred             CCCCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHHHhC
Q 019274          259 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG  301 (343)
Q Consensus       259 ~~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~~~~  301 (343)
                      +.+.++|||.+||.  .|+. +++..|...|..+|+.|+.+.+
T Consensus       445 ~~t~i~gLy~aGdG--AG~a-rgI~~Aaa~Gi~~A~~i~~k~~  484 (486)
T COG2509         445 LSTSIKGLYPAGDG--AGLA-RGIVSAAADGIKAAEGIARKYG  484 (486)
T ss_pred             ceeeecceEEcccc--cccc-chhHHHhhhhHHHHHHHHHHhc
Confidence            45789999999999  4676 6888999999999999998765

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=88.27  E-value=22  Score=33.23  Aligned_cols=54  Identities=15%  Similarity=0.145  Sum_probs=39.1

Q ss_pred             hhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-------C--eEEecCEEEEeeChhhH
Q 019274           63 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-------K--ETYSAGAVVLAVGISTL  120 (343)
Q Consensus        63 l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-------g--~~~~ad~VV~a~p~~~~  120 (343)
                      |-+.|.+.+.+.|++++.+ .|++|..++  +.+ .|++.       +  .+++||.||-|.+....
T Consensus        94 fd~~L~~~a~~~G~~v~~~-~v~~v~~~~--~~~-~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~  156 (388)
T TIGR02023        94 FDSYLRERAQKAGAELIHG-LFLKLERDR--DGV-TLTYRTPKKGAGGEKGSVEADVVIGADGANSP  156 (388)
T ss_pred             HHHHHHHHHHhCCCEEEee-EEEEEEEcC--CeE-EEEEEeccccCCCcceEEEeCEEEECCCCCcH
Confidence            4456777778889999765 699998766  443 34432       2  37899999999998663

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=88.24  E-value=2.2  Score=41.47  Aligned_cols=56  Identities=16%  Similarity=0.103  Sum_probs=43.3

Q ss_pred             chhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE-CC---eEEecCEEEEeeChh
Q 019274           60 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK---ETYSAGAVVLAVGIS  118 (343)
Q Consensus        60 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~-~g---~~~~ad~VV~a~p~~  118 (343)
                      ...+.+.+.+.+++.|++|++++.|++|...+  +.+ .|+. ++   +++++|.||++++..
T Consensus       219 d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~--~~~-~v~~~~~~~~~~i~~D~vl~a~G~~  278 (484)
T TIGR01438       219 DQDCANKVGEHMEEHGVKFKRQFVPIKVEQIE--AKV-KVTFTDSTNGIEEEYDTVLLAIGRD  278 (484)
T ss_pred             CHHHHHHHHHHHHHcCCEEEeCceEEEEEEcC--CeE-EEEEecCCcceEEEeCEEEEEecCC
Confidence            44577888889999999999999999998655  433 3444 33   378999999999864

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=88.22  E-value=1.3  Score=41.49  Aligned_cols=47  Identities=19%  Similarity=0.129  Sum_probs=37.6

Q ss_pred             HHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhh
Q 019274           68 MDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST  119 (343)
Q Consensus        68 ~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~  119 (343)
                      .+.+++.|++++++++|++|..++  .   .|.++++++.+|++|+|++...
T Consensus        65 ~~~~~~~gv~~~~~~~V~~id~~~--~---~v~~~~~~~~yd~LVlATG~~~  111 (377)
T PRK04965         65 GEFAEQFNLRLFPHTWVTDIDAEA--Q---VVKSQGNQWQYDKLVLATGASA  111 (377)
T ss_pred             HHHHHhCCCEEECCCEEEEEECCC--C---EEEECCeEEeCCEEEECCCCCC
Confidence            345677899999999999998765  3   2456777899999999999743

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=88.14  E-value=2.2  Score=41.20  Aligned_cols=57  Identities=23%  Similarity=0.275  Sum_probs=42.6

Q ss_pred             chhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEE-EEEE--CC--eEEecCEEEEeeChh
Q 019274           60 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCIS-DVVC--GK--ETYSAGAVVLAVGIS  118 (343)
Q Consensus        60 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~-~V~~--~g--~~~~ad~VV~a~p~~  118 (343)
                      ...+.+.+.+.+++.|++|++++.|++|..++  +.+. .+..  ++  +++++|.||++++..
T Consensus       214 d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~--~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~  275 (466)
T PRK06115        214 DTETAKTLQKALTKQGMKFKLGSKVTGATAGA--DGVSLTLEPAAGGAAETLQADYVLVAIGRR  275 (466)
T ss_pred             CHHHHHHHHHHHHhcCCEEEECcEEEEEEEcC--CeEEEEEEEcCCCceeEEEeCEEEEccCCc
Confidence            34477888899999999999999999998654  3332 2221  22  478999999999864

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=88.14  E-value=0.95  Score=38.63  Aligned_cols=64  Identities=17%  Similarity=0.170  Sum_probs=50.0

Q ss_pred             EeecCCCchhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhhH
Q 019274           53 VWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL  120 (343)
Q Consensus        53 ~~~~gG~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~~  120 (343)
                      ++|.|=.+..|++.|.+..++.|-+|..+ .|+++..+.   +...+.++.+.+.||.||+|+++..-
T Consensus        62 GFPdgi~G~~l~d~mrkqs~r~Gt~i~tE-tVskv~~ss---kpF~l~td~~~v~~~avI~atGAsAk  125 (322)
T KOG0404|consen   62 GFPDGITGPELMDKMRKQSERFGTEIITE-TVSKVDLSS---KPFKLWTDARPVTADAVILATGASAK  125 (322)
T ss_pred             CCCcccccHHHHHHHHHHHHhhcceeeee-ehhhccccC---CCeEEEecCCceeeeeEEEeccccee
Confidence            35665444569999999999999999988 678888775   33556677778999999999998553

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=87.99  E-value=23  Score=33.05  Aligned_cols=56  Identities=25%  Similarity=0.115  Sum_probs=42.5

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhH
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTL  120 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~  120 (343)
                      ..+-+.+.+.++ .++.+++++.|++|...+  +. +.|+++ |.+++|+.||-|.++...
T Consensus        87 ~~f~~~l~~~~~-~~~~~~~~~~V~~i~~~~--~~-~~v~~~~g~~i~a~~VvDa~g~~~~  143 (374)
T PF05834_consen   87 ADFYEFLLERAA-AGGVIRLNARVTSIEETG--DG-VLVVLADGRTIRARVVVDARGPSSP  143 (374)
T ss_pred             HHHHHHHHHHhh-hCCeEEEccEEEEEEecC--ce-EEEEECCCCEEEeeEEEECCCcccc
Confidence            346677777777 567899999999999877  42 345665 679999999999986443

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=87.65  E-value=0.17  Score=48.37  Aligned_cols=59  Identities=27%  Similarity=0.290  Sum_probs=0.0

Q ss_pred             HHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC---C-eEEecCEEEEeeChhhHHHhhhh
Q 019274           66 PWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG---K-ETYSAGAVVLAVGISTLQELIKN  126 (343)
Q Consensus        66 ~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~---g-~~~~ad~VV~a~p~~~~~~Ll~~  126 (343)
                      .|.+.+++.|++|++++.|.++..++  ++|++|++.   | .+++|+.||=|++-..+..+..-
T Consensus        95 ~l~~~l~e~gv~v~~~t~v~~v~~~~--~~i~~V~~~~~~g~~~i~A~~~IDaTG~g~l~~~aG~  157 (428)
T PF12831_consen   95 VLDEMLAEAGVEVLLGTRVVDVIRDG--GRITGVIVETKSGRKEIRAKVFIDATGDGDLAALAGA  157 (428)
T ss_dssp             -----------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccc
Confidence            34445567899999999999999988  889999885   2 47899999999997666555433

>PLN02546 glutathione reductase

Probab=87.36  E-value=2.6  Score=41.73  Aligned_cols=59  Identities=20%  Similarity=0.266  Sum_probs=43.7

Q ss_pred             CchhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEE-ecCEEEEeeChhh
Q 019274           59 LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETY-SAGAVVLAVGIST  119 (343)
Q Consensus        59 ~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~-~ad~VV~a~p~~~  119 (343)
                      +...+.+.+.+.++++|++|++++.|.+|..+++ +.+ .+.++++++ .+|.||++++...
T Consensus       291 ~d~~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~-g~v-~v~~~~g~~~~~D~Viva~G~~P  350 (558)
T PLN02546        291 FDEEVRDFVAEQMSLRGIEFHTEESPQAIIKSAD-GSL-SLKTNKGTVEGFSHVMFATGRKP  350 (558)
T ss_pred             cCHHHHHHHHHHHHHCCcEEEeCCEEEEEEEcCC-CEE-EEEECCeEEEecCEEEEeecccc
Confidence            3455667788889999999999999999986543 543 455554444 5899999998654

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=86.70  E-value=2.1  Score=41.18  Aligned_cols=34  Identities=21%  Similarity=0.144  Sum_probs=25.4

Q ss_pred             HHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE
Q 019274           67 WMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC  101 (343)
Q Consensus        67 l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~  101 (343)
                      ..+.+++.|+++++++.+.+|..+++ |++++|++
T Consensus       315 ~~~~l~~~GV~~~~~~~~~~i~~~~~-g~v~~v~~  348 (449)
T TIGR01316       315 EIAHAEEEGVKFHFLCQPVEIIGDEE-GNVRAVKF  348 (449)
T ss_pred             HHHHHHhCCCEEEeccCcEEEEEcCC-CeEEEEEE
Confidence            34567788999999999999976443 67766654

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=86.41  E-value=1.6  Score=42.19  Aligned_cols=38  Identities=32%  Similarity=0.328  Sum_probs=28.4

Q ss_pred             CCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHHHhC
Q 019274          261 TSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG  301 (343)
Q Consensus       261 ~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~~~~  301 (343)
                      |..+|+|.+||-+. +.  ..+..|+..|+.||..|.+.+.
T Consensus       428 Ts~~gVfa~GD~~~-g~--~~~~~Av~~G~~AA~~i~~~L~  465 (471)
T PRK12810        428 TSNPKVFAAGDMRR-GQ--SLVVWAIAEGRQAARAIDAYLM  465 (471)
T ss_pred             CCCCCEEEccccCC-Cc--hhHHHHHHHHHHHHHHHHHHHh
Confidence            45688899998865 32  2456788889999988888775

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=86.38  E-value=2.5  Score=38.33  Aligned_cols=58  Identities=24%  Similarity=0.316  Sum_probs=46.4

Q ss_pred             CchhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhhH
Q 019274           59 LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL  120 (343)
Q Consensus        59 ~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~~  120 (343)
                      ....|.+.+.+.++..|.++.. ..|.++...+  . ...|+++.++++|+.||+|++...-
T Consensus        59 ~g~~L~~~~~~~a~~~~~~~~~-~~v~~v~~~~--~-~F~v~t~~~~~~ak~vIiAtG~~~~  116 (305)
T COG0492          59 LGPELMEQMKEQAEKFGVEIVE-DEVEKVELEG--G-PFKVKTDKGTYEAKAVIIATGAGAR  116 (305)
T ss_pred             chHHHHHHHHHHHhhcCeEEEE-EEEEEEeecC--c-eEEEEECCCeEEEeEEEECcCCccc
Confidence            3456899999999988998888 7888887765  3 4678887656999999999998654

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=86.10  E-value=2.3  Score=39.43  Aligned_cols=51  Identities=24%  Similarity=0.275  Sum_probs=40.7

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE-CCeEEecCEEEEeeChh
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS  118 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~-~g~~~~ad~VV~a~p~~  118 (343)
                      ..+.+.+.+.++++|++++++++|++|.  +  +   .|.+ +|+++++|.||++++..
T Consensus       191 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~--~--~---~v~~~~g~~i~~D~vi~a~G~~  242 (364)
T TIGR03169       191 AKVRRLVLRLLARRGIEVHEGAPVTRGP--D--G---ALILADGRTLPADAILWATGAR  242 (364)
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCeeEEEc--C--C---eEEeCCCCEEecCEEEEccCCC
Confidence            3467788888999999999999999884  3  3   2445 46789999999999864

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=85.18  E-value=2.8  Score=41.23  Aligned_cols=60  Identities=18%  Similarity=0.083  Sum_probs=44.4

Q ss_pred             hhhhHHHHHHHHHcCC--eEEcceeeeEEEecCC---CCeEEEEEEC--Ce--EEecCEEEEeeChhhHH
Q 019274           61 EKIFEPWMDSMRTRGC--EFLDGRRVTDFIYDEE---RCCISDVVCG--KE--TYSAGAVVLAVGISTLQ  121 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~--~i~~~~~V~~I~~~~~---~g~v~~V~~~--g~--~~~ad~VV~a~p~~~~~  121 (343)
                      ..+.+.|..+++..|.  .|++||+|++|...+|   +|+ |.|++.  |+  +..+|+||+|++.....
T Consensus        84 ~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~-W~V~~~~~g~~~~~~fD~VvvatG~~~~P  152 (531)
T PF00743_consen   84 SEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGK-WEVTTENDGKEETEEFDAVVVATGHFSKP  152 (531)
T ss_dssp             HHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETE-EEEEETTTTEEEEEEECEEEEEE-SSSCE
T ss_pred             HHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCce-EEEEeecCCeEEEEEeCeEEEcCCCcCCC
Confidence            4588888888887775  7999999999988653   133 677775  32  45799999999986543

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=85.06  E-value=2.9  Score=39.66  Aligned_cols=87  Identities=18%  Similarity=0.085  Sum_probs=48.0

Q ss_pred             HHHHHHHhhhcccCCCCceeeeEEEecCCCccccCCCCCCCCCCCCC-CCCCeEEeeccccCCCCCccchHHHHHHHHHH
Q 019274          215 AKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFT-SFPNLFMAGDWITTRHGSWSQERSYVTGLEAA  293 (343)
Q Consensus       215 ~~~~~~L~~~~p~~~~~~~~~~~~~r~~~~~~~~~~g~~~~~p~~~~-~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA  293 (343)
                      -.....+-+++|+++.++++..-+. . +..+...|....  +..++ .++||||||+-+..    -+.+-|+.+|..|+
T Consensus       285 ~~~Q~~~~r~Ipgle~a~~~r~G~~-~-~~~~i~~p~~l~--~~l~~k~~~~l~~AGqi~g~----~Gy~ea~a~G~~Ag  356 (436)
T PRK05335        285 WGEQKRVFRMIPGLENAEFVRYGVM-H-RNTFINSPKLLD--PTLQLKKRPNLFFAGQITGV----EGYVESAASGLLAG  356 (436)
T ss_pred             HHHHHHHHhcccchhceEEEeceEE-e-eccccCChhhCc--hhccccCCCCEEeeeeecCc----hHHHHHHHHHHHHH
Confidence            4455667788999986544322221 1 111111222111  12222 57999999999643    23356788888888


Q ss_pred             HHHHHHhCCCCcccccc
Q 019274          294 NRVVDYLGDGSFSKIIP  310 (343)
Q Consensus       294 ~~il~~~~~~~~~~~~~  310 (343)
                      ..+...+. |+...++|
T Consensus       357 ~n~~~~~~-g~~~~~~~  372 (436)
T PRK05335        357 INAARLAL-GKEPVIPP  372 (436)
T ss_pred             HHHHHHhc-CCCCCCCC
Confidence            77766553 34444454

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=84.93  E-value=3.4  Score=38.56  Aligned_cols=57  Identities=5%  Similarity=0.112  Sum_probs=45.2

Q ss_pred             hhhHHHHHHHHHcC-CeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhhHH
Q 019274           62 KIFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQ  121 (343)
Q Consensus        62 ~l~~~l~~~l~~~G-~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~~~  121 (343)
                      .|.+.|.+.+++.+ ++++.+++|++|..++  +.+ .|.+++++++||.||-|-+..+..
T Consensus       105 ~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~--~~v-~v~~~~~~~~adlvIgADG~~S~v  162 (374)
T PRK06617        105 DFKKILLSKITNNPLITLIDNNQYQEVISHN--DYS-IIKFDDKQIKCNLLIICDGANSKV  162 (374)
T ss_pred             HHHHHHHHHHhcCCCcEEECCCeEEEEEEcC--CeE-EEEEcCCEEeeCEEEEeCCCCchh
Confidence            46778888877765 7899999999998876  444 466665689999999999998754

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=84.73  E-value=2.8  Score=41.05  Aligned_cols=52  Identities=12%  Similarity=0.265  Sum_probs=39.3

Q ss_pred             HHHHHHHH-cCCeEEcceeeeEEEecCCCCeEEEEEEC----C--eEEecCEEEEeeChhh
Q 019274           66 PWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVCG----K--ETYSAGAVVLAVGIST  119 (343)
Q Consensus        66 ~l~~~l~~-~G~~i~~~~~V~~I~~~~~~g~v~~V~~~----g--~~~~ad~VV~a~p~~~  119 (343)
                      .+.+.+++ .|++|++++.|++|.-++  +++.+|++.    +  +++++|.||++++...
T Consensus       392 ~l~~~l~~~~gV~i~~~~~v~~i~~~~--~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~P  450 (515)
T TIGR03140       392 VLQDKLKSLPNVDILTSAQTTEIVGDG--DKVTGIRYQDRNSGEEKQLDLDGVFVQIGLVP  450 (515)
T ss_pred             HHHHHHhcCCCCEEEECCeeEEEEcCC--CEEEEEEEEECCCCcEEEEEcCEEEEEeCCcC
Confidence            45566665 599999999999998665  566667652    2  4689999999998644

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=84.59  E-value=48  Score=33.49  Aligned_cols=61  Identities=30%  Similarity=0.287  Sum_probs=42.5

Q ss_pred             hhHHHHHHHHHcCC--eEEcceeeeEEEecCCC-CeEEEEEE-------CC--eEEecCEEEEeeChhhH-HHhh
Q 019274           63 IFEPWMDSMRTRGC--EFLDGRRVTDFIYDEER-CCISDVVC-------GK--ETYSAGAVVLAVGISTL-QELI  124 (343)
Q Consensus        63 l~~~l~~~l~~~G~--~i~~~~~V~~I~~~~~~-g~v~~V~~-------~g--~~~~ad~VV~a~p~~~~-~~Ll  124 (343)
                      +-+.|.+.+.+.|+  +++.+++|+++..++++ ..| .|++       +|  ++++||.||-|=++.+. .+.+
T Consensus       143 le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V-~v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S~VR~~l  216 (634)
T PRK08294        143 VHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPV-TVTLRRTDGEHEGEEETVRAKYVVGCDGARSRVRKAI  216 (634)
T ss_pred             HHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCE-EEEEEECCCCCCCceEEEEeCEEEECCCCchHHHHhc
Confidence            55667777877775  77899999999876431 123 2433       24  47899999999998775 3444

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=84.37  E-value=3.1  Score=40.04  Aligned_cols=38  Identities=32%  Similarity=0.469  Sum_probs=27.2

Q ss_pred             CCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHHHhC
Q 019274          261 TSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG  301 (343)
Q Consensus       261 ~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~~~~  301 (343)
                      |..+|+|.+||-.. +.  ..+..|+..|..||..|.+.+.
T Consensus       415 Ts~~~VfA~GD~~~-~~--~~~~~A~~~G~~aA~~I~~~l~  452 (457)
T PRK11749        415 TSLPGVFAGGDIVT-GA--ATVVWAVGDGKDAAEAIHEYLE  452 (457)
T ss_pred             cCCCCEEEeCCcCC-Cc--hHHHHHHHHHHHHHHHHHHHHh
Confidence            45678888888763 22  2456688888888888887765

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=84.10  E-value=3.7  Score=39.67  Aligned_cols=38  Identities=29%  Similarity=0.466  Sum_probs=28.6

Q ss_pred             CCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHHHhC
Q 019274          261 TSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG  301 (343)
Q Consensus       261 ~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~~~~  301 (343)
                      +..+|+|.+||-+. + + ..+..|+..|+.||..|.+.++
T Consensus       429 T~~~gVfa~GD~~~-~-~-~~~~~Ai~~G~~aA~~i~~~L~  466 (467)
T TIGR01318       429 TTNPKIFAGGDAVR-G-A-DLVVTAVAEGRQAAQGILDWLG  466 (467)
T ss_pred             CCCCCEEEECCcCC-C-c-cHHHHHHHHHHHHHHHHHHHhc
Confidence            45689999999864 2 2 2456688899999999888765

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>TIGR02028 ChlP geranylgeranyl reductase

Probab=84.03  E-value=38  Score=31.88  Aligned_cols=40  Identities=13%  Similarity=-0.049  Sum_probs=31.3

Q ss_pred             CCCeEEeeccccCCCCC--ccchHHHHHHHHHHHHHHHHhCC
Q 019274          263 FPNLFMAGDWITTRHGS--WSQERSYVTGLEAANRVVDYLGD  302 (343)
Q Consensus       263 ~~~L~laGd~~~~g~~~--~~~ega~~Sg~~aA~~il~~~~~  302 (343)
                      -+|+.++||.-+.-.|.  .++..|+.||..||+.+.+.+..
T Consensus       269 ~~~~llvGDAAg~v~P~tGeGI~~A~~sg~~aa~~i~~~~~~  310 (398)
T TIGR02028       269 VGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEESRL  310 (398)
T ss_pred             CCCEEEEEcCCCCCCcccccchHHHHHHHHHHHHHHHHHHhc
Confidence            37899999987643332  67888999999999999876643

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=83.99  E-value=42  Score=32.30  Aligned_cols=39  Identities=13%  Similarity=-0.054  Sum_probs=30.5

Q ss_pred             CCCeEEeeccccCCCCC--ccchHHHHHHHHHHHHHHHHhC
Q 019274          263 FPNLFMAGDWITTRHGS--WSQERSYVTGLEAANRVVDYLG  301 (343)
Q Consensus       263 ~~~L~laGd~~~~g~~~--~~~ega~~Sg~~aA~~il~~~~  301 (343)
                      .+|+.++||..+.-.|.  .++..|+.||..||+.+.+.+.
T Consensus       308 ~~~vlLvGDAAg~v~P~tGeGI~~Am~sg~~AAe~i~~~~~  348 (450)
T PLN00093        308 RGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSE  348 (450)
T ss_pred             CCCcEEEeccccCCCccccccHHHHHHHHHHHHHHHHHHHh
Confidence            46899999976533332  6788899999999999987664

>PRK11445 putative oxidoreductase; Provisional

Probab=83.40  E-value=37  Score=31.27  Aligned_cols=52  Identities=12%  Similarity=-0.024  Sum_probs=37.7

Q ss_pred             HHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE--CCe--EEecCEEEEeeChhhH
Q 019274           65 EPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSAGAVVLAVGISTL  120 (343)
Q Consensus        65 ~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~--~g~--~~~ad~VV~a~p~~~~  120 (343)
                      +.|.+. .+.|++++.++.|+++..++  +. +.|+.  +|+  +++||.||.|.+..+.
T Consensus       103 ~~L~~~-~~~gv~v~~~~~v~~i~~~~--~~-~~v~~~~~g~~~~i~a~~vV~AdG~~S~  158 (351)
T PRK11445        103 LWLKSL-IPASVEVYHNSLCRKIWRED--DG-YHVIFRADGWEQHITARYLVGADGANSM  158 (351)
T ss_pred             HHHHHH-HhcCCEEEcCCEEEEEEEcC--CE-EEEEEecCCcEEEEEeCEEEECCCCCcH
Confidence            344443 35689999999999998776  33 34553  343  6899999999999764

>PRK07846 mycothione reductase; Reviewed

Probab=83.27  E-value=4.5  Score=38.92  Aligned_cols=56  Identities=18%  Similarity=0.213  Sum_probs=40.4

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhH
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTL  120 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~  120 (343)
                      ..+.+.+.+.+ +.|++++++++|++|..++  +.+ .|.++ ++++++|.||++++...-
T Consensus       207 ~~~~~~l~~l~-~~~v~i~~~~~v~~i~~~~--~~v-~v~~~~g~~i~~D~vl~a~G~~pn  263 (451)
T PRK07846        207 DDISERFTELA-SKRWDVRLGRNVVGVSQDG--SGV-TLRLDDGSTVEADVLLVATGRVPN  263 (451)
T ss_pred             HHHHHHHHHHH-hcCeEEEeCCEEEEEEEcC--CEE-EEEECCCcEeecCEEEEEECCccC
Confidence            34555555544 5689999999999998665  443 35554 668999999999987543

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=82.83  E-value=2.6  Score=39.49  Aligned_cols=76  Identities=20%  Similarity=0.210  Sum_probs=41.0

Q ss_pred             HHHHHHHhhhcccCCCCceeeeE-EEecCCCccccCCCCCCCCCCCCC-CCCCeEEeeccccCCCCCccchHHHHHHHHH
Q 019274          215 AKAVSYLSKCIKDFSTATVMDHK-IRRFPKSLTHFFPGSYKYMMRGFT-SFPNLFMAGDWITTRHGSWSQERSYVTGLEA  292 (343)
Q Consensus       215 ~~~~~~L~~~~p~~~~~~~~~~~-~~r~~~~~~~~~~g~~~~~p~~~~-~~~~L~laGd~~~~g~~~~~~ega~~Sg~~a  292 (343)
                      ..++..+-+.+|+++.++++..- .++.  . +.. |.  ...+..++ .++|||+||+-+.+  -  +.+.|+.+|..|
T Consensus       311 ~~~Q~~~~r~IpGLe~a~~~r~Gy~~ey--~-~v~-~~--~l~~~l~~k~~~~lf~AGqi~G~--~--Gy~eaaa~G~~a  380 (392)
T PF01134_consen  311 WDVQKRIFRSIPGLENAEILRPGYAHEY--D-FVD-PP--QLLNTLETKKIPGLFFAGQINGT--E--GYEEAAAQGLIA  380 (392)
T ss_dssp             HHHHHHHHTTSTTTTT--EEE--EEEEE--E-EE--GG--GBBTTSBBSSSBTEEE-GGGGTB-----SHHHHHHHHHHH
T ss_pred             HHHHHHHhhcCCChhcChhhheEEeeee--e-EEe-hh--hcccceEECCCCCceECCCCcch--h--HHHHHHHHHHHH
Confidence            45666777889999865443211 1111  0 000 11  11123334 48999999999643  2  345677788888


Q ss_pred             HHHHHHHh
Q 019274          293 ANRVVDYL  300 (343)
Q Consensus       293 A~~il~~~  300 (343)
                      +-.+...+
T Consensus       381 g~na~~~~  388 (392)
T PF01134_consen  381 GINAARRL  388 (392)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            87776654

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>PRK12831 putative oxidoreductase; Provisional

Probab=82.80  E-value=3.8  Score=39.55  Aligned_cols=38  Identities=29%  Similarity=0.325  Sum_probs=29.0

Q ss_pred             CCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHHHhC
Q 019274          261 TSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG  301 (343)
Q Consensus       261 ~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~~~~  301 (343)
                      |.++|+|.+||-+. |.  ..+..|+..|+.||..|.+.+.
T Consensus       424 Ts~pgVfAaGD~~~-g~--~~v~~Ai~~G~~AA~~I~~~L~  461 (464)
T PRK12831        424 TSKEGVFAGGDAVT-GA--ATVILAMGAGKKAAKAIDEYLS  461 (464)
T ss_pred             cCCCCEEEeCCCCC-Cc--hHHHHHHHHHHHHHHHHHHHhc
Confidence            45689999999864 32  3567788999999999887764

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=82.66  E-value=2.9  Score=39.53  Aligned_cols=54  Identities=15%  Similarity=0.164  Sum_probs=40.5

Q ss_pred             hhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhHH
Q 019274           63 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQ  121 (343)
Q Consensus        63 l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~~  121 (343)
                      |.+.|.+.+.  ...++++++|++|..++  +.+ .|... |.+++||.||.|-+.++..
T Consensus       107 l~~~L~~~~~--~~~v~~~~~v~~i~~~~--~~~-~v~~~~g~~~~ad~vVgADG~~S~v  161 (414)
T TIGR03219       107 FLDALLKHLP--EGIASFGKRATQIEEQA--EEV-QVLFTDGTEYRCDLLIGADGIKSAL  161 (414)
T ss_pred             HHHHHHHhCC--CceEEcCCEEEEEEecC--CcE-EEEEcCCCEEEeeEEEECCCccHHH
Confidence            5566666553  45789999999998766  343 46554 6689999999999998753

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=81.72  E-value=5  Score=37.54  Aligned_cols=56  Identities=13%  Similarity=0.033  Sum_probs=41.9

Q ss_pred             hhHHHHHHHHHc-CCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhHH
Q 019274           63 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQ  121 (343)
Q Consensus        63 l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~~  121 (343)
                      |-..|.+.+.+. |++|+.+++|++++.++  +.+ .|++. |.+++||.||.|.+..+..
T Consensus       112 l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~--~~~-~v~~~~g~~~~~~lvIgADG~~S~v  169 (384)
T PRK08849        112 IQLGLWQQFAQYPNLTLMCPEKLADLEFSA--EGN-RVTLESGAEIEAKWVIGADGANSQV  169 (384)
T ss_pred             HHHHHHHHHHhCCCeEEECCCceeEEEEcC--CeE-EEEECCCCEEEeeEEEEecCCCchh
Confidence            334555555543 68999999999999877  444 36665 6689999999999998754

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=81.56  E-value=5.6  Score=41.88  Aligned_cols=57  Identities=18%  Similarity=0.150  Sum_probs=41.8

Q ss_pred             hhhhHHHHHHHHHc----CCeEEcceeeeEEEecCCCCeEEEEEE----CCe--EEecCEEEEeeChhh
Q 019274           61 EKIFEPWMDSMRTR----GCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST  119 (343)
Q Consensus        61 ~~l~~~l~~~l~~~----G~~i~~~~~V~~I~~~~~~g~v~~V~~----~g~--~~~ad~VV~a~p~~~  119 (343)
                      ..+.+.|.+.+++.    ++++..++.+.++..++  |+|.||..    +|+  .+.|+.||+|++...
T Consensus       139 ~~i~~~L~~~l~~~~~~~~i~~~~~~~~~~Li~~~--g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g  205 (897)
T PRK13800        139 KDVKKALYRVLRQRSMRERIRIENRLMPVRVLTEG--GRAVGAAALNTRTGEFVTVGAKAVILATGPCG  205 (897)
T ss_pred             hhHHHHHHHHHHHhhhcCCcEEEeceeeEEEEeeC--CEEEEEEEEecCCCcEEEEECCEEEECCCccc
Confidence            45778888887765    45666666667887765  88888864    243  578999999999754

>TIGR03452 mycothione_red mycothione reductase

Probab=81.49  E-value=6.3  Score=37.91  Aligned_cols=55  Identities=20%  Similarity=0.240  Sum_probs=39.9

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhh
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST  119 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~  119 (343)
                      ..+.+.+.+.+ +.|.++++++.|+++..++  +.+ .|.+. |+++++|.||++++...
T Consensus       210 ~~~~~~l~~~~-~~gI~i~~~~~V~~i~~~~--~~v-~v~~~~g~~i~~D~vl~a~G~~p  265 (452)
T TIGR03452       210 EDISDRFTEIA-KKKWDIRLGRNVTAVEQDG--DGV-TLTLDDGSTVTADVLLVATGRVP  265 (452)
T ss_pred             HHHHHHHHHHH-hcCCEEEeCCEEEEEEEcC--CeE-EEEEcCCCEEEcCEEEEeeccCc
Confidence            34556665544 4689999999999998765  443 35554 56899999999998643

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=81.47  E-value=2.9  Score=38.57  Aligned_cols=59  Identities=24%  Similarity=0.305  Sum_probs=36.2

Q ss_pred             CCCchhhhHHHHHHHH------HcCCeEEcceeeeEEEecCCCCeEEEEEEC----C--eEEecCEEEEeeCh
Q 019274           57 GTLREKIFEPWMDSMR------TRGCEFLDGRRVTDFIYDEERCCISDVVCG----K--ETYSAGAVVLAVGI  117 (343)
Q Consensus        57 gG~~~~l~~~l~~~l~------~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~----g--~~~~ad~VV~a~p~  117 (343)
                      +|+...+++.|.+.+=      +.-.+|+.+++|+++...++ |++ .+.+.    +  .++++|.||+||+-
T Consensus       269 ~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~-~~~-~l~~~~~~~~~~~~~~~D~VilATGy  339 (341)
T PF13434_consen  269 GGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGD-GGV-RLTLRHRQTGEEETLEVDAVILATGY  339 (341)
T ss_dssp             SEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES--SSE-EEEEEETTT--EEEEEESEEEE---E
T ss_pred             CCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCC-CEE-EEEEEECCCCCeEEEecCEEEEcCCc
Confidence            5666667777766531      22358999999999998874 453 34442    2  46799999999974

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=81.30  E-value=5  Score=40.63  Aligned_cols=39  Identities=31%  Similarity=0.443  Sum_probs=31.3

Q ss_pred             CCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHHHhCC
Q 019274          261 TSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGD  302 (343)
Q Consensus       261 ~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~~~~~  302 (343)
                      |.++|+|.+||-+. | + ..+..|+..|+.||..|.+.++.
T Consensus       615 Ts~~gVfAaGD~~~-g-~-~~vv~Ai~~Gr~AA~~I~~~L~~  653 (654)
T PRK12769        615 TSNPKIFAGGDAVR-G-A-DLVVTAMAEGRHAAQGIIDWLGV  653 (654)
T ss_pred             cCCCCEEEcCCcCC-C-C-cHHHHHHHHHHHHHHHHHHHhCc
Confidence            56789999999865 3 2 35677999999999999988763

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=81.23  E-value=4.9  Score=38.42  Aligned_cols=53  Identities=11%  Similarity=0.164  Sum_probs=41.5

Q ss_pred             chhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE-CCeEEecCEEEEeeChhh
Q 019274           60 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST  119 (343)
Q Consensus        60 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~-~g~~~~ad~VV~a~p~~~  119 (343)
                      ...+.+.+.+.+++.|++++++++|++|.  +  ..   |++ +|+++++|.||++++...
T Consensus       188 d~~~~~~l~~~l~~~gI~i~~~~~v~~i~--~--~~---v~~~~g~~~~~D~vl~a~G~~p  241 (438)
T PRK13512        188 DADMNQPILDELDKREIPYRLNEEIDAIN--G--NE---VTFKSGKVEHYDMIIEGVGTHP  241 (438)
T ss_pred             CHHHHHHHHHHHHhcCCEEEECCeEEEEe--C--CE---EEECCCCEEEeCEEEECcCCCc
Confidence            34577788889999999999999999985  2  22   344 366789999999998644

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=80.85  E-value=3.5  Score=42.72  Aligned_cols=48  Identities=23%  Similarity=0.260  Sum_probs=38.0

Q ss_pred             HHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhh
Q 019274           67 WMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST  119 (343)
Q Consensus        67 l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~  119 (343)
                      ..+.++++|++++++++|++|..+.  .   .|.+. |.++.+|++|+|++...
T Consensus        60 ~~~~~~~~gv~~~~g~~V~~Id~~~--k---~V~~~~g~~~~yD~LVlATGs~p  108 (785)
T TIGR02374        60 SKDWYEKHGITLYTGETVIQIDTDQ--K---QVITDAGRTLSYDKLILATGSYP  108 (785)
T ss_pred             CHHHHHHCCCEEEcCCeEEEEECCC--C---EEEECCCcEeeCCEEEECCCCCc
Confidence            3456778899999999999998765  3   24555 66899999999999753

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=80.63  E-value=3.9  Score=38.52  Aligned_cols=46  Identities=13%  Similarity=0.184  Sum_probs=36.1

Q ss_pred             HHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhh
Q 019274           69 DSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST  119 (343)
Q Consensus        69 ~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~  119 (343)
                      +.+++.|+++++++.|..|..++  ..   |.++ |+++.+|++|+|++...
T Consensus        66 ~~~~~~~i~~~~g~~V~~id~~~--~~---v~~~~g~~~~yd~LViATGs~~  112 (396)
T PRK09754         66 NWWQENNVHLHSGVTIKTLGRDT--RE---LVLTNGESWHWDQLFIATGAAA  112 (396)
T ss_pred             HHHHHCCCEEEcCCEEEEEECCC--CE---EEECCCCEEEcCEEEEccCCCC
Confidence            34567899999999999998765  32   4444 67899999999999754

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=80.14  E-value=7.2  Score=33.37  Aligned_cols=56  Identities=21%  Similarity=0.209  Sum_probs=41.8

Q ss_pred             hhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-------C-----eEEecCEEEEeeChhh
Q 019274           63 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-------K-----ETYSAGAVVLAVGIST  119 (343)
Q Consensus        63 l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-------g-----~~~~ad~VV~a~p~~~  119 (343)
                      ++-.|+...-+.|++|.-.+.|+.+...++ +||.+|.++       +     -+++|+.||.|++.+.
T Consensus        98 ~~s~L~s~a~~aGakifn~~~vEDvi~r~~-~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda  165 (230)
T PF01946_consen   98 FTSTLASKAIDAGAKIFNLTSVEDVIVRED-DRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDA  165 (230)
T ss_dssp             HHHHHHHHHHTTTEEEEETEEEEEEEEECS-CEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSS
T ss_pred             HHHHHHHHHhcCCCEEEeeeeeeeeEEEcC-CeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCch
Confidence            566666666668999999999999987765 789999874       2     2789999999997654

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=80.06  E-value=1.9  Score=43.14  Aligned_cols=50  Identities=20%  Similarity=0.232  Sum_probs=42.2

Q ss_pred             HHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChh
Q 019274           66 PWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS  118 (343)
Q Consensus        66 ~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~  118 (343)
                      .|.+.+++.|.++++++.+++|..+   +++.+|+.. |..+.||-||+|++..
T Consensus       192 lL~~~le~~Gi~~~l~~~t~ei~g~---~~~~~vr~~DG~~i~ad~VV~a~GIr  242 (793)
T COG1251         192 LLRRKLEDLGIKVLLEKNTEEIVGE---DKVEGVRFADGTEIPADLVVMAVGIR  242 (793)
T ss_pred             HHHHHHHhhcceeecccchhhhhcC---cceeeEeecCCCcccceeEEEecccc
Confidence            4666788999999999999999863   577889886 6789999999999864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	343
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	3e-11
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	6e-11
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	3e-08
3utf_A	513	UDP-galactopyranose mutase; nucleotide binding, fl	3e-06
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	5e-06
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	2e-05
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	4e-05
2e1m_C	181	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	6e-05
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	7e-05
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	2e-04

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A* Length = 484

 Score = 63.3 bits (153), Expect = 3e-11
 Identities = 35/321 (10%), Positives = 89/321 (27%), Gaps = 30/321 (9%)

Query: 3   QFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVW-------- 54
           QFG  E +    + P        P    S       +  + L   +              
Sbjct: 146 QFG--EGIADIFMRPYNFKVWAVPPCLMSTEWVEERVAPVDLERIRRNIQENRDDLGWGP 203

Query: 55  ------CRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSA 108
                  +      I++   + + +    F  G +      D +    S+     E  S 
Sbjct: 204 NATFRFPQRGGTGIIYQAIKEKLPSEKLTFNSGFQAIAIDADAKTITFSN----GEVVSY 259

Query: 109 GAVVLAVGISTLQELIKNSILCNREEFLKVLN-LASIDVVSVKLWFDKKVTVPNVSNACS 167
             ++  V    L  + K +     +E+  + + +       + +           +    
Sbjct: 260 DYLISTVPFDNLLRMTKGTGFKGYDEWPAIADKMVYSSTNVIGIGVKGTPPPHLKTACWL 319

Query: 168 GFGDS----LAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSK 223
            F +        T F  +     +  +    +  +   + +  P+    ++   +     
Sbjct: 320 YFPEDTSPFYRATVF--SNYSKYNVPEGHWSLMLEVSES-KYKPVNHSTLIEDCIVGCLA 376

Query: 224 CIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYM--MRGFTSFPNLFMAGDWITTRHGSWS 281
                    ++     R  K     F G    +   +       ++  G +   R+   +
Sbjct: 377 SNLLLPEDLLVSKWHYRIEKGYPTPFIGRNNLLEKAQPELMSRCIYSRGRFGAWRYEVGN 436

Query: 282 QERSYVTGLEAANRVVDYLGD 302
           Q+ S++ G+EA + V+    +
Sbjct: 437 QDHSFMQGVEAIDHVLGLATE 457

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} Length = 470

 Score = 62.3 bits (151), Expect = 6e-11
 Identities = 50/328 (15%), Positives = 108/328 (32%), Gaps = 54/328 (16%)

Query: 7   SERLYRNVIGPLVQVGLFAPAEQCSAAATLGILY-------FIILAHQKNFDLVWCRGTL 59
            + +  N+I PL+        ++ S  +T    Y        +IL  +K       +   
Sbjct: 161 GDEVVENLIEPLLSGIYAGDIDKLSLMSTFPQFYQTEQKHRSLILGMKKTRPQGSGQQLT 220

Query: 60  REKI-----FEPWMDSMRTRGCEFLD------GRRVTDFIYDEERCCISDVVCGKETYSA 108
            +K          + ++     + L       G +VT   +      +   +    T  A
Sbjct: 221 AKKQGQFQTLSTGLQTLVEEIEKQLKLTKVYKGTKVTKLSHSGSCYSL--ELDNGVTLDA 278

Query: 109 GAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSG 168
            +V++         ++           LK ++  S+  V+  L F +     +V     G
Sbjct: 279 DSVIVTAPHKAAAGMLSELPA---ISHLKNMHSTSVANVA--LGFPE----GSVQMEHEG 329

Query: 169 FGDS---------LAWTFFDLNKIYDEHKDDSATVIQADFYHAN--ELMPLKDDQVVAKA 217
            G            A T+   NK +     +  T+++A    A    ++ L D+ ++   
Sbjct: 330 TGFVISRNSDFAITACTWT--NKKWPHAAPEGKTLLRAYVGKAGDESIVDLSDNDIINIV 387

Query: 218 VSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGF-----TSFPNLFMAGDW 272
           +  L K +            + R+ +S+  +  G +K  ++       +++P ++M G  
Sbjct: 388 LEDLKKVMNI--NGEPEMTCVTRWHESMPQYHVG-HKQRIKELREALASAYPGVYMTGAS 444

Query: 273 ITTRHGSWSQERSYVTGLEAANRVVDYL 300
                G          G  A +  + YL
Sbjct: 445 ---FEGV-GIPDCIDQGKAAVSDALTYL 468

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* Length = 478

 Score = 53.8 bits (129), Expect = 3e-08
 Identities = 48/326 (14%), Positives = 87/326 (26%), Gaps = 44/326 (13%)

Query: 8   ERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAH-------------QKNFDLVW 54
            R  + ++  +         EQ S AAT  +L  +   H             Q+   L  
Sbjct: 161 HRATQVLLDAVQTGIYAGDVEQLSVAATFPMLVKMEREHRSLILGAIRAQKAQRQAALPA 220

Query: 55  CRGTLREKIFEPWMDSMRT--------RGCEFLDGRRVTDFIYDEERCCIS-DVVCGKET 105
                       +   ++          G     G RV     ++    +  +    +  
Sbjct: 221 GTAPKLSGALSTFDGGLQVLIDALAASLGDAAHVGARVEGLAREDGGWRLIIEEHGRRAE 280

Query: 106 YSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNA 165
            S   VVLA       +L++  +       +  +  A I VV   L FD           
Sbjct: 281 LSVAQVVLAAPAHATAKLLRP-LDDALAALVAGIAYAPIAVVH--LGFDAGTLPAP---D 334

Query: 166 CSGFGDSLAWTFFDLNKIYDEHK-----DDSATVIQADF--YHANELMPLKDDQVVAKAV 218
             GF          L  I+         +    +            L+   +D + A A 
Sbjct: 335 GFGFLVPAEEQRRMLGAIHASTTFPFRAEGGRVLYSCMVGGARQPGLVEQDEDALAALAR 394

Query: 219 SYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYM---MRGFTSFPNLFMAGDWITT 275
             L        TA     ++ R+P  +  +  G  + +          P L + G+    
Sbjct: 395 EELKALAGV--TARPSFTRVFRWPLGIPQYNLGHLERVAAIDAALQRLPGLHLIGNA--- 449

Query: 276 RHGSWSQERSYVTGLEAANRVVDYLG 301
             G            + A+ +V    
Sbjct: 450 YKGV-GLNDCIRNAAQLADALVAGNT 474

>3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine dinucleotide BIND isomerase; HET: FDA; 2.25A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* Length = 513

 Score = 47.9 bits (113), Expect = 3e-06
 Identities = 36/299 (12%), Positives = 91/299 (30%), Gaps = 32/299 (10%)

Query: 61  EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL 120
             I+    +++      F +  +VT    + +   + D      T     +V  + +  L
Sbjct: 222 GGIWIAVANTLPKEKTRFGEKGKVTKVNANNKTVTLQD----GTTIGYKKLVSTMAVDFL 277

Query: 121 QELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVS----------------- 163
            E + +          K L  +S  V+ V +   +   + +                   
Sbjct: 278 AEAMND---QELVGLTKQLFYSSTHVIGVGVRGSRPERIGDKCWLYFPEDNCPFYRATIF 334

Query: 164 ------NACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKA 217
                 N              D ++       +            + + P+  + ++A  
Sbjct: 335 SNYSPYNQPEASAALPTMQLADGSRPQSTEAKEGPYWSIMLEVSESSMKPVNQETILADC 394

Query: 218 VSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYM--MRGFTSFPNLFMAGDWITT 275
           +  L        T  ++    RRF              +  +       +++  G + + 
Sbjct: 395 IQGLVNTEMLKPTDEIVSTYHRRFDHGYPTPTLEREGTLTQILPKLQDKDIWSRGRFGSW 454

Query: 276 RHGSWSQERSYVTGLEAANRVVDYLGDGSFSKIIPVEEDEPHIEALRTVNRRFNEIRAQ 334
           R+   +Q+ S++ G+EA + +V+   + + +    V   +     L    + F + +AQ
Sbjct: 455 RYEVGNQDHSFMLGVEAVDNIVNGAVELTLNYPDFVNGRQNTERRLVDGAQVFAKSKAQ 513

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 Length = 504

 Score = 47.0 bits (111), Expect = 5e-06
 Identities = 46/346 (13%), Positives = 90/346 (26%), Gaps = 55/346 (15%)

Query: 6   CSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILY-------------FIILAHQKNFDL 52
             + +   +I P V        +  S   +   L+                    KN   
Sbjct: 160 FGKEVVDYLIDPFVAGTCGGDPDSLSMHHSFPELWNLEKRFGSVILGAIRSKLSPKNEKK 219

Query: 53  VWCRGTLREKIFEPWMDSMRT-------------RGCEFLDGRRVTDFIYDEERCCISDV 99
                T   K  +    S                R  E     RV +           D 
Sbjct: 220 QGPPKTSANKKRQRGSFSFLGGMQTLTDAICKDLREDELRLNSRVLELSCSCTEDSAIDS 279

Query: 100 ---------VCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVK 150
                        E  S  AV++   +  ++ +       N      +  +  + +  V 
Sbjct: 280 WSIISASPHKRQSEEESFDAVIMTAPLCDVKSMKIAKRG-NPFLLNFIPEVDYVPLSVVI 338

Query: 151 LWFDKKVTVPN-------VSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADF--YH 201
             F ++            V +     G     T F  + ++ +   ++  +         
Sbjct: 339 TTFKRENVKYPLEGFGVLVPSKEQQHGLKTLGTLFS-SMMFPDRAPNNVYLYTTFVGGSR 397

Query: 202 ANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYM---MR 258
             EL      ++     S L + +               + K+   +       +    +
Sbjct: 398 NRELAKASRTELKEIVTSDLKQLLGA--EGEPTYVNHLYWSKAFPLYGHNYDSVLDAIDK 455

Query: 259 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGDGS 304
              + P LF AG+    R G  S  ++  +G  AA+ V+ YL   S
Sbjct: 456 MEKNLPGLFYAGNH---RGGL-SVGKALSSGCNAADLVISYLESVS 497

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... Length = 520

 Score = 45.2 bits (107), Expect = 2e-05
 Identities = 45/337 (13%), Positives = 98/337 (29%), Gaps = 50/337 (14%)

Query: 12  RNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSM 71
           + +    V + + A   + SA   L  L+++         ++      +E+ F      +
Sbjct: 162 KQLATLFVNLCVTAETHEVSA---LWFLWYVKQCGG-TTRIISTTNGGQERKFVGGSGQV 217

Query: 72  RTRGCEFLDGR-----RVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQEL-IK 125
             R  + L  R      V       E   +       E Y A  V+ A+  +   ++   
Sbjct: 218 SERIMDLLGDRVKLERPVIYIDQTRENVLV--ETLNHEMYEAKYVISAIPPTLGMKIHFN 275

Query: 126 NSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYD 185
             +   R + +  + L S  V+   +++ +                  A   + L    D
Sbjct: 276 PPLPMMRNQMITRVPLGS--VIKCIVYYKEPFWRKKDYCGTMIIDGEEAPVAYTL---DD 330

Query: 186 EHKDDSATVIQADFY---HANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRF- 241
              + +   I   F     A +L  L  ++ + K     +K +        + ++ + + 
Sbjct: 331 TKPEGNYAAIMG-FILAHKARKLARLTKEERLKKLCELYAKVLGSLEALEPVHYEEKNWC 389

Query: 242 --PKSLTHFFPGSYKYMMRG----------FTSFPNLFMAG-----DWITTRHGSWSQER 284
                   +  G Y                      ++ AG      W     G+     
Sbjct: 390 EEQ-----YSGGCYTTYFPPGILTQYGRVLRQPVDRIYFAGTETATHWSGYMEGA----- 439

Query: 285 SYVTGLEAANRVVDYLGDGSFSKIIPVEEDEPHIEAL 321
               G  AA  ++  +G     +I   E +   + A 
Sbjct: 440 -VEAGERAAREILHAMGKIPEDEIWQSEPESVDVPAQ 475

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* Length = 489

 Score = 44.1 bits (104), Expect = 4e-05
 Identities = 30/241 (12%), Positives = 77/241 (31%), Gaps = 31/241 (12%)

Query: 81  GRRVTDFIYDEERCCISDVVCGK-ETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVL 139
           G  VT      E   +     G  ++ +A   +  +    +   ++N++  +    LK  
Sbjct: 257 GAEVTSMKNVSEGVTVEYTAGGSKKSITADYAICTIPPHLVGR-LQNNLPGDVLTALKAA 315

Query: 140 NLASIDVVSVKLWFDKK--VTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQA 197
             +S     + + + ++   T   +    S     ++   F     YD +  D   V+  
Sbjct: 316 KPSS--SGKLGIEYSRRWWETEDRIYGGASNTDKDISQIMFP----YDHYNSDRGVVVA- 368

Query: 198 DFY----HANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPK------SLTH 247
            +Y           L   Q +AKA++  S+   +  T  +       + +      +  +
Sbjct: 369 -YYSSGKRQEAFESLTHRQRLAKAIAEGSEIHGEKYTRDISSSFSGSWRRTKYSESAWAN 427

Query: 248 FFPGSYKYMMRGFTSFP-------NLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYL 300
           +      +       +         ++ AGD ++     W Q  +  +  +    + + +
Sbjct: 428 WAGSGGSHGGAATPEYEKLLEPVDKIYFAGDHLSNAIA-W-QHGALTSARDVVTHIHERV 485

Query: 301 G 301
            
Sbjct: 486 A 486

>2e1m_C L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} Length = 181

 Score = 42.2 bits (99), Expect = 6e-05
 Identities = 22/130 (16%), Positives = 38/130 (29%), Gaps = 16/130 (12%)

Query: 184 YDEHKDDSATVIQADFY----HANELMPLKDDQVVAKAVSYLSKC----IKDFSTATVMD 235
           +         V+ A  Y     A       D +    A+  L       I+ F T     
Sbjct: 28  HPVPGTQGGVVLAA--YSWSDDAARWDSFDDAERYGYALENLQSVHGRRIEVFYTGAGQT 85

Query: 236 HKIRRFPKSL---THFFPGSYKYMMRGF-TSFPNLFMAGDWITTRHGSWSQERSYVTGLE 291
               R P +      + P                ++ AG+ ++ +H  W  E +  T + 
Sbjct: 86  QSWLRDPYACGEAAVYTPHQMTAFHLDVVRPEGPVYFAGEHVSLKHA-W-IEGAVETAVR 143

Query: 292 AANRVVDYLG 301
           AA  V +   
Sbjct: 144 AAIAVNEAPV 153

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} Length = 475

 Score = 43.5 bits (102), Expect = 7e-05
 Identities = 40/327 (12%), Positives = 86/327 (26%), Gaps = 45/327 (13%)

Query: 6   CSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILY------------FIILAHQKNFDLV 53
             + L   +I PL+        +Q S  AT                   ++         
Sbjct: 158 LGDALVEKLIEPLLSGIYAGNIDQMSTFATYPQFVANEQKAGSLFEGMRLMRPLDQLPQT 217

Query: 54  WCRGTLREKIFEPWMDSMRT---------RGCEFLDGRRVTDFIYDEERCCISDVVCGKE 104
                     F      + +            E      +     ++ R     +     
Sbjct: 218 PQTTIKATGQFLSLETGLESLIERLEEVLERSEIRLETPLLAISREDGRYR---LKTDHG 274

Query: 105 TYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVP-NVS 163
              A  V+L +    + +L+ ++ L      L+   L +    +V + FD++ ++P   +
Sbjct: 275 PEYADYVLLTIPHPQVVQLLPDAHL----PELE--QLTTHSTATVTMIFDQQQSLPIEGT 328

Query: 164 NACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHA--NELMPLKDDQVVAKAVSYL 221
                     + T          H     TV++A       + L+   D+ +    +  L
Sbjct: 329 GFVVNRRAPYSITACTAIDQKWNHSAPDHTVLRAFVGRPGNDHLVHESDEVLQQAVLQDL 388

Query: 222 SKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGF-----TSFPNLFMAGDWITTR 276
            K      T       I R    L  +  G +   ++         +P +++AG      
Sbjct: 389 EKICGR--TLEPKQVIISRLMDGLPAYTVG-HADRIQRVREEVLAQYPGIYLAGLA---Y 442

Query: 277 HGSWSQERSYVTGLEAANRVVDYLGDG 303
            G         +       +       
Sbjct: 443 DGV-GLPDCVASAKTMIESIELEQSHT 468

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A Length = 852

 Score = 42.3 bits (98), Expect = 2e-04
 Identities = 42/275 (15%), Positives = 86/275 (31%), Gaps = 55/275 (20%)

Query: 81  GRRVTDFIYDEERCCISDVVC----GKETYSAGAVVLAVGISTLQELIKNSIL------C 130
              V    Y    C +  V          Y   AV+  + +  L++    ++        
Sbjct: 587 NTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQ-QPPAVQFVPPLPE 645

Query: 131 NREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDD 190
            +   ++ +   +++   V L FD+    P+V          +  T     +++      
Sbjct: 646 WKTSAVQRMGFGNLN--KVVLCFDRVFWDPSV-----NLFGHVGSTTASRGELFLFWNLY 698

Query: 191 SATVIQADFY--HANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHF 248
            A ++ A      A  +  + DD +V + ++ L       +     +  + R+      +
Sbjct: 699 KAPILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRW--RADPW 756

Query: 249 FPGSYKYMMRGFT----------------------SFPNLFMAG-----DWITTRHGSWS 281
             GSY Y+  G +                        P LF AG     ++  T HG+  
Sbjct: 757 ARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGA-- 814

Query: 282 QERSYVTGLEAANRVVDYLGDGSFSKIIPVEEDEP 316
                ++GL  A R+ D      ++         P
Sbjct: 815 ----LLSGLREAGRIADQFLGAMYTLPRQATPGVP 845

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	343
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	99.97
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	99.95
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	99.94
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	99.94
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	99.93
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	99.91
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	99.91
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	99.9
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	99.9
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	99.89
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	99.89
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	99.88
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	99.87
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	99.84
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	99.83
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	99.8
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	99.79
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	99.78
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	99.77
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	99.76
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	99.71
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	99.66
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	99.63
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	99.61
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.59
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	99.26
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	99.15
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	99.12
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	99.1
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	99.08
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	99.03
2e1m_C	181	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	98.8
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	98.66
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	98.55
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	98.52
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	98.46
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	98.43
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	98.42
3dme_A	369	Conserved exported protein; structural genomics, P	98.41
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	98.38
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	98.29
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	98.11
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	98.08
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	98.07
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	98.01
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	98.0
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	97.95
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	97.82
3atr_A	453	Conserved archaeal protein; saturating double bond	97.73
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	97.68
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	97.65
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	97.36
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	97.35
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	97.32
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	97.19
2e1m_B	130	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	97.13
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	97.09
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	97.05
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	97.02
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	97.0
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	96.95
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	96.86
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	96.86
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	96.76
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	96.67
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	96.67
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	96.64
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	96.55
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	96.54
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	96.5
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	96.37
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	96.29
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	96.29
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	96.26
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	96.25
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	96.23
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	96.05
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	96.04
2cul_A	232	Glucose-inhibited division protein A-related PROT	95.91
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	95.9
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	95.88
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	95.8
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	95.65
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	95.59
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	95.49
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	95.49
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	95.46
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	95.39
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	95.39
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	95.39
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	95.39
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	95.38
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	95.24
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	95.18
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	95.14
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	95.13
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	95.09
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	95.05
4dna_A	463	Probable glutathione reductase; structural genomic	95.0
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	95.0
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	94.99
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	94.96
1fec_A	490	Trypanothione reductase; redox-active center, oxid	94.95
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	94.92
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	94.92
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	94.87
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	94.72
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	94.68
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	94.65
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	94.6
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	94.56
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	94.52
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	94.5
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	94.47
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	94.26
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	94.22
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	94.2
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	94.13
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	94.13
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	94.03
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	93.97
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	93.95
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	93.92
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	93.81
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	93.71
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	93.55
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	93.55
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	93.48
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	93.47
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	93.47
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	93.44
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	93.27
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	93.21
3r9u_A	315	Thioredoxin reductase; structural genomics, center	93.21
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	93.19
2bry_A	497	NEDD9 interacting protein with calponin homology a	93.15
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	93.13
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	93.08
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	93.04
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	92.9
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	92.63
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	92.61
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	92.52
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	92.47
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	92.25
1ojt_A	482	Surface protein; redox-active center, glycolysis,	92.17
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	92.15
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	92.12
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	92.09
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	92.01
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	92.01
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	92.0
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	91.93
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	91.92
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	91.75
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	91.65
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	91.57
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	91.54
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	91.51
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	91.17
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	90.97
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	90.96
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	90.75
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	90.68
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	90.48
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	90.33
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	90.13
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	90.01
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	89.81
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	89.73
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	89.69
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	89.59
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	89.53
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	89.44
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	89.42
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	89.35
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	89.3
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	89.1
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	89.03
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	89.02
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	88.97
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	88.69
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	88.61
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	88.29
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	87.86
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	87.73
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	87.67
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	87.58
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	87.5
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	87.42
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	87.37
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	87.37
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	86.86
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	86.67
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	86.01
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	85.92
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	85.63
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	85.23
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	85.04
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	84.71
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	84.53
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	84.5
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	84.15
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	83.99
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	83.89
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	83.1
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	82.12
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	82.03
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	81.53
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	81.41
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	81.09
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	81.04
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	80.83
2cul_A	232	Glucose-inhibited division protein A-related PROT	80.66
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	80.38

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=99.97  E-value=2e-29  Score=237.84  Aligned_cols=278  Identities=12%  Similarity=0.069  Sum_probs=210.6

Q ss_pred             CCHHHHHHhHHHHHHhhhcCCcccccHHHHHHHHHHHHHhcCCCceeEeecCCCchhhhHHHHHHHHHcCCeEEcceeee
Q 019274            6 CSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVT   85 (343)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~~~~~~~~~~~~~gG~~~~l~~~l~~~l~~~G~~i~~~~~V~   85 (343)
                      ++++.++.++++++...++.+++++|+..++..+......  .  ...+++||+ +.|+++|++.++++|++|+++++|+
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~--~--~~~~~~gG~-~~l~~~l~~~~~~~G~~i~~~~~V~  220 (425)
T 3ka7_A          146 VSDEWLIKFADSFCGWALSLKSDEVPVEEVFEIIENMYRF--G--GTGIPEGGC-KGIIDALETVISANGGKIHTGQEVS  220 (425)
T ss_dssp             CCCHHHHHHHHHHHHHHHSSCGGGSBHHHHHHHHHHHHHH--C--SCEEETTSH-HHHHHHHHHHHHHTTCEEECSCCEE
T ss_pred             cCCHHHHHHHHHHHHHHhCCCcccchHHHHHHHHHHHHhc--C--CccccCCCH-HHHHHHHHHHHHHcCCEEEECCcee
Confidence            5788899999999999999999999999888887765311  1  235789995 6799999999999999999999999


Q ss_pred             EEEecCCCCeEEEEEECCeEEecCEEEEeeChhhHHHhhhhhc-cc-CchhHHhhccCcccceEEEEEEeccCCCCCCCc
Q 019274           86 DFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSI-LC-NREEFLKVLNLASIDVVSVKLWFDKKVTVPNVS  163 (343)
Q Consensus        86 ~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~~~~Ll~~~~-~~-~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~~  163 (343)
                      +|..++  +++++|+++|++++||.||+|+|++.+.+|+++.. ++ +..+.+.+.++.+.+.+++++++++++. . .+
T Consensus       221 ~i~~~~--~~~~gv~~~g~~~~ad~VV~a~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~-~-~~  296 (425)
T 3ka7_A          221 KILIEN--GKAAGIIADDRIHDADLVISNLGHAATAVLCSEALSKEADAAYFKMVGTLQPSAGIKICLAADEPLV-G-HT  296 (425)
T ss_dssp             EEEEET--TEEEEEEETTEEEECSEEEECSCHHHHHHHTTTTCCTTTTHHHHHHHHHCCCBEEEEEEEEESSCSS-C-SS
T ss_pred             EEEEEC--CEEEEEEECCEEEECCEEEECCCHHHHHHhcCCcccccCCHHHHHHhhCcCCCceEEEEeecCCCcc-C-cC
Confidence            999987  78888999888999999999999999999987532 10 2345567778888888899999998864 2 34


Q ss_pred             ceeecCCCCccceEeeccccccccCCCCCeEEEEEeeCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCceeeeEEEecCC
Q 019274          164 NACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPK  243 (343)
Q Consensus       164 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~L~~~~p~~~~~~~~~~~~~r~~~  243 (343)
                      +.+++.+......+...+...+.+++++.+++.+.++...+..+. .++.++.++++|++++|+..   .....+.+|+.
T Consensus       297 ~~~~~~~~~~~~~~~~~s~~~p~~ap~G~~~l~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~p~~~---~~~~~v~~~~~  372 (425)
T 3ka7_A          297 GVLLTPYTRRINGVNEVTQADPELAPPGKHLTMCHQYVAPENVKN-LESEIEMGLEDLKEIFPGKR---YEVLLIQSYHD  372 (425)
T ss_dssp             SEEECCSSSSEEEEECGGGTCGGGSCTTCEEEEEEEEECGGGGGG-HHHHHHHHHHHHHHHSTTCC---EEEEEEEEEBT
T ss_pred             EEEECCChhhcceEEeccCCCCCcCCCCCeEEEEEeccccccccc-hHHHHHHHHHHHHHhCCCCc---eEEEEEEEECC
Confidence            555543322111233344455666656777776654432222222 34667999999999999843   33346788999


Q ss_pred             CccccCCCCCCCCCCCCCCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHH
Q 019274          244 SLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD  298 (343)
Q Consensus       244 ~~~~~~~g~~~~~p~~~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~  298 (343)
                      ++|.+.+++. .++...+|++|||+||||+.+.+| .+|++|+.||+.||++|+.
T Consensus       373 ~~P~~~~~~~-~~~~~~~p~~gL~laG~~~~~~gg-~gv~~~~~s~~~~~~~i~~  425 (425)
T 3ka7_A          373 EWPVNRAASG-TDPGNETPFSGLYVVGDGAKGKGG-IEVEGVALGVMSVMEKVLG  425 (425)
T ss_dssp             TBCSBSSCTT-CCCCSBCSSBTEEECSTTSCCTTC-CHHHHHHHHHHHHHHC---
T ss_pred             CccccccccC-CCCCCCCCcCCeEEeCCccCCCCC-CccHHHHHHHHHHHHHhhC
Confidence            9999998853 457777899999999999987666 5999999999999999874

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=99.95  E-value=2.6e-25  Score=209.66  Aligned_cols=272  Identities=12%  Similarity=0.066  Sum_probs=192.2

Q ss_pred             CCCHHHHHHhHHHHHHhhhcCCcccccHHHHHHHHHHHHHhcCCCceeEeecCCCchhhhHHHHHHHHHcCCeEEcceee
Q 019274            5 GCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRV   84 (343)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~~~~~~~~~~~~~gG~~~~l~~~l~~~l~~~G~~i~~~~~V   84 (343)
                      +++++.++.++++++...++.+++++|+..++..+......  .  ...+|+||+ +.|+++|++.++++|++|+++++|
T Consensus       138 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--g~~~~~gG~-~~l~~~l~~~~~~~G~~i~~~~~V  212 (421)
T 3nrn_A          138 IGENEFLLSVLESFAGWADSVSLSDLTALELAKEIRAALRW--G--GPGLIRGGC-KAVIDELERIIMENKGKILTRKEV  212 (421)
T ss_dssp             TCCCHHHHHHHHHHHHHHHSSCGGGSBHHHHHHHHHHHHHH--C--SCEEETTCH-HHHHHHHHHHHHTTTCEEESSCCE
T ss_pred             cCCcHHHHHHHHHHHHHhcCCCcccCCHHHHHHHHHHHhhc--C--CcceecCCH-HHHHHHHHHHHHHCCCEEEcCCeE
Confidence            47888899999999999999999999999888887765311  1  235789994 779999999999999999999999


Q ss_pred             eEEEecCCCCeEEEEEECCeEEecCEEEEeeChhhHHHhhhhhcccCchhHHhhccCcccceEEEEEEeccCCCCCCCcc
Q 019274           85 TDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSN  164 (343)
Q Consensus        85 ~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~~~~Ll~~~~~~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~~~  164 (343)
                      ++|..++  +++  |.++|++++||.||+|+|++.+.+|++...++ ....+.+.++.+.+.++++++++++.. . .++
T Consensus       213 ~~i~~~~--~~v--V~~~g~~~~ad~Vv~a~~~~~~~~ll~~~~~~-~~~~~~~~~~~~~~~~~v~l~~~~~~~-~-~~~  285 (421)
T 3nrn_A          213 VEINIEE--KKV--YTRDNEEYSFDVAISNVGVRETVKLIGRDYFD-RDYLKQVDSIEPSEGIKFNLAVPGEPR-I-GNT  285 (421)
T ss_dssp             EEEETTT--TEE--EETTCCEEECSEEEECSCHHHHHHHHCGGGSC-HHHHHHHHTCCCCCEEEEEEEEESSCS-S-CSS
T ss_pred             EEEEEEC--CEE--EEeCCcEEEeCEEEECCCHHHHHHhcCcccCC-HHHHHHHhCCCCCceEEEEEEEcCCcc-c-CCe
Confidence            9999877  665  76667899999999999999999998743332 345567788888888999999998753 2 345


Q ss_pred             eeecCCCCccceEeeccccccccCCCCCeEEEEEeeCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCceeeeEEEecCCC
Q 019274          165 ACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKS  244 (343)
Q Consensus       165 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~L~~~~p~~~~~~~~~~~~~r~~~~  244 (343)
                      .+++.+... ..+...+...+...+++.+++.+..+..    ..+.++.++.++++|++++|  . .+++  .+.+|+.+
T Consensus       286 ~~~~~~~~~-~~i~~~s~~~p~~ap~G~~~~~~~~~~~----~~~~~~~~~~~~~~L~~~~p--~-~~~~--~~~~~~~~  355 (421)
T 3nrn_A          286 IVFTPGLMI-NGFNEPSALDKSLAREGYTLIMAHMALK----NGNVKKAIEKGWEELLEIFP--E-GEPL--LAQVYRDG  355 (421)
T ss_dssp             EEECTTSSS-CEEECGGGTCGGGSCTTEEEEEEEEECT----TCCHHHHHHHHHHHHHHHCT--T-CEEE--EEEEC---
T ss_pred             EEEcCCcce-eeEeccCCCCCCcCCCCceEEEEEEeec----cccHHHHHHHHHHHHHHHcC--C-CeEE--EeeeccCC
Confidence            555443221 1222333333444534556655544321    22345669999999999999  2 2443  45678888


Q ss_pred             ccccCCCCCCCCCCCCCCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHHHhCCCCcc
Q 019274          245 LTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGDGSFS  306 (343)
Q Consensus       245 ~~~~~~g~~~~~p~~~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~~~~~~~~~  306 (343)
                      +|.+.+......+  .++ +|||+||||+.++++ .+|++|+.||.+||+.|    +.|+++
T Consensus       356 ~p~~~~~~~~~~~--~~~-~gl~laGd~~~~~~g-~~~~ga~~sg~~aA~~l----~~~~~~  409 (421)
T 3nrn_A          356 NPVNRTRAGLHIE--WPL-NEVLVVGDGYRPPGG-IEVDGIALGVMKALEKL----NLGSFS  409 (421)
T ss_dssp             ----------CCC--CCC-SSEEECSTTCCCTTC-CHHHHHHHHHHHHHHHT----TSCCCC
T ss_pred             CCcccccCCCCCC--CCC-CcEEEECCcccCCCc-eeeehHHHHHHHHHHHh----CcCchh
Confidence            8877433211222  567 999999999985434 36799999999999999    666766

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=99.94  E-value=1.4e-26  Score=224.07  Aligned_cols=313  Identities=16%  Similarity=0.086  Sum_probs=216.0

Q ss_pred             CHHHHHHhHHHHHHhhhcCCcccccHHHHHHHHHHH-----HHhcCCCceeEeecCCCchhhhHHHHHHHHHcCCeEEcc
Q 019274            7 SERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFI-----ILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDG   81 (343)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~-----~~~~~~~~~~~~~~gG~~~~l~~~l~~~l~~~G~~i~~~   81 (343)
                      .++.++.++++++.+.++.+++++|+..++..+...     ++....+....+++||+ +.|+++|++.+   |++|++|
T Consensus       157 ~~~~~~~~~~~~~~~~~g~~~~~~s~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gG~-~~l~~~l~~~l---g~~i~~~  232 (520)
T 1s3e_A          157 WTESAKQLATLFVNLCVTAETHEVSALWFLWYVKQCGGTTRIISTTNGGQERKFVGGS-GQVSERIMDLL---GDRVKLE  232 (520)
T ss_dssp             SSHHHHHHHHHHHHHHHSSCTTTSBHHHHHHHHHTTTCHHHHHCSTTSTTSEEETTCT-HHHHHHHHHHH---GGGEESS
T ss_pred             CCHHHHHHHHHHHhhhcCCChHHhHHHHHHHHHhhcCchhhhcccCCCcceEEEeCCH-HHHHHHHHHHc---CCcEEcC
Confidence            345668899999999999999999999887665421     01111222345678995 67999998776   7899999


Q ss_pred             eeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhHHHhhhhhcccCchhHHhhccCcccceEEEEEEeccCCCCC
Q 019274           82 RRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVP  160 (343)
Q Consensus        82 ~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~~~Ll~~~~~~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~  160 (343)
                      ++|++|..++  +++. |++. |++++||+||+|+|+..+.+|+..+.++ ....+.++++.+.++.++++.|++++|..
T Consensus       233 ~~V~~i~~~~--~~v~-v~~~~g~~~~ad~VI~a~p~~~l~~l~~~p~lp-~~~~~~i~~~~~~~~~kv~l~~~~~~w~~  308 (520)
T 1s3e_A          233 RPVIYIDQTR--ENVL-VETLNHEMYEAKYVISAIPPTLGMKIHFNPPLP-MMRNQMITRVPLGSVIKCIVYYKEPFWRK  308 (520)
T ss_dssp             CCEEEEECSS--SSEE-EEETTSCEEEESEEEECSCGGGGGGSEEESCCC-HHHHHHTTSCCBCCEEEEEEECSSCGGGG
T ss_pred             CeeEEEEECC--CeEE-EEECCCeEEEeCEEEECCCHHHHcceeeCCCCC-HHHHHHHHhCCCcceEEEEEEeCCCcccC
Confidence            9999999877  5554 7775 6689999999999999988876444342 34456778888989999999999987643


Q ss_pred             CCc-ceee--cCCCCccceEeeccccccccCCCC-CeEEEEEee--CCCCCCCCCHHHHHHHHHHHHhhhcccCCCCcee
Q 019274          161 NVS-NACS--GFGDSLAWTFFDLNKIYDEHKDDS-ATVIQADFY--HANELMPLKDDQVVAKAVSYLSKCIKDFSTATVM  234 (343)
Q Consensus       161 ~~~-~~~~--~~~~~~~~~~~d~~~~~~~~~~~~-~~~i~~~~~--~~~~~~~~~~~e~~~~~~~~L~~~~p~~~~~~~~  234 (343)
                      ... ...+  ..+.... .++|.+..      ++ ..++.....  .+..|.+++++++.+.++++|+++||......++
T Consensus       309 ~~~~g~~~~~~~~~~~~-~~~d~~~~------~~~~~~l~~~~~~~~a~~~~~~~~~e~~~~vl~~L~~~~~~~~~~~p~  381 (520)
T 1s3e_A          309 KDYCGTMIIDGEEAPVA-YTLDDTKP------EGNYAAIMGFILAHKARKLARLTKEERLKKLCELYAKVLGSLEALEPV  381 (520)
T ss_dssp             GTEEEEEEECSTTCSCS-EEEECCCT------TSCSCEEEEEEETHHHHHHTTSCHHHHHHHHHHHHHHHHTCGGGGCCS
T ss_pred             CCCCceeeccCCCCceE-EEeeCCCC------CCCCCEEEEEccchhhhhhhcCCHHHHHHHHHHHHHHHhCccccCCcc
Confidence            221 1111  1111222 23453321      22 244433222  2245677889999999999999999864112455


Q ss_pred             eeEEEecCCCcc-------ccCCCCCC-CCCCCCCCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHHHhCCCCcc
Q 019274          235 DHKIRRFPKSLT-------HFFPGSYK-YMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGDGSFS  306 (343)
Q Consensus       235 ~~~~~r~~~~~~-------~~~~g~~~-~~p~~~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~~~~~~~~~  306 (343)
                      .....+|....+       .+.||... .++...++++||||||+++...++ ++|+||+.||++||++|++.++....+
T Consensus       382 ~~~~~~W~~~~~~~G~~~~~~~~g~~~~~~~~l~~p~~~L~fAG~~t~~~~~-g~v~GAi~SG~~aA~~i~~~l~~~~~~  460 (520)
T 1s3e_A          382 HYEEKNWCEEQYSGGCYTTYFPPGILTQYGRVLRQPVDRIYFAGTETATHWS-GYMEGAVEAGERAAREILHAMGKIPED  460 (520)
T ss_dssp             EEEEEEGGGCTTTCSSSCBCCCTTHHHHHGGGTTCCBTTEEECSGGGCSSST-TSHHHHHHHHHHHHHHHHHHTTSSCGG
T ss_pred             EEEEEeeCCCCCCCCCCccccCCCccccchHHHhCCCCCEEEeehhhcCcCc-EEhHHHHHHHHHHHHHHHHHHhcCccc
Confidence            666777853211       23445321 234456788999999999976777 699999999999999999999888888


Q ss_pred             cccccCCCchhhhHHHHHHHHHHhhhcCCCCC
Q 019274          307 KIIPVEEDEPHIEALRTVNRRFNEIRAQLPLS  338 (343)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (343)
                      .+|..++ +......+.+.+.  ++.+.||+-
T Consensus       461 ~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~  489 (520)
T 1s3e_A          461 EIWQSEP-ESVDVPAQPITTT--FLERHLPSV  489 (520)
T ss_dssp             GSSCCCC-CCSSSCCCCCCCC--HHHHHSCCH
T ss_pred             cccccCC-ccccCCccccccc--hHhhcCCCc
Confidence            9998777 5455555555555  445566653

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=99.94  E-value=1.3e-25  Score=214.98  Aligned_cols=282  Identities=13%  Similarity=0.089  Sum_probs=203.4

Q ss_pred             CCCHHHHHHhHHHHHHhhhcCCcccccHHHHHHHHHHHHHhc--------------------------CCCceeEeecCC
Q 019274            5 GCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAH--------------------------QKNFDLVWCRGT   58 (343)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~~~--------------------------~~~~~~~~~~gG   58 (343)
                      ++++++.+++++|++.++|+.+++++|+..+++.+.......                          .....+.+++||
T Consensus       153 ~~g~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~l~~~e~~~gsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG  232 (477)
T 3nks_A          153 RLGPEVASLAMDSLCRGVFAGNSRELSIRSCFPSLFQAEQTHRSILLGLLLGAGRTPQPDSALIRQALAERWSQWSLRGG  232 (477)
T ss_dssp             HHCHHHHHHTHHHHHHHHHSSCTTTBBHHHHCHHHHHHHHHHSCHHHHHHHC-----CCCCHHHHHHHHTTCSEEEETTC
T ss_pred             hhCHHHHHHHHHHHhcccccCCHHHhhHHHHHHHHHHHHHHcCCHHHHHHHhcccccCCchhhhhhhcccCccEEEECCC
Confidence            567899999999999999999999999998877654421000                          012245678999


Q ss_pred             CchhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhhHHHhhhhhcccCchhHHhh
Q 019274           59 LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKV  138 (343)
Q Consensus        59 ~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~~~~Ll~~~~~~~~~~~~~~  138 (343)
                      + +.|+++|++.+++.|++|+++++|++|..++  ++++.|++++++++||+||+|+|++.+.+|+++..   ++..+.+
T Consensus       233 ~-~~l~~~l~~~l~~~g~~i~~~~~V~~i~~~~--~~~~~v~~~~~~~~ad~vv~a~p~~~~~~ll~~~~---~~~~~~l  306 (477)
T 3nks_A          233 L-EMLPQALETHLTSRGVSVLRGQPVCGLSLQA--EGRWKVSLRDSSLEADHVISAIPASVLSELLPAEA---APLARAL  306 (477)
T ss_dssp             T-THHHHHHHHHHHHTTCEEECSCCCCEEEECG--GGCEEEECSSCEEEESEEEECSCHHHHHHHSCGGG---HHHHHHH
T ss_pred             H-HHHHHHHHHHHHhcCCEEEeCCEEEEEEEcC--CceEEEEECCeEEEcCEEEECCCHHHHHHhccccC---HHHHHHH
Confidence            6 6799999999999999999999999999877  44457877777899999999999999999987642   3455677


Q ss_pred             ccCcccceEEEEEEeccCCCCCCCcceeecCCCC---ccceEeeccccccccCCCCCeEEEEEeeCC------CCCCCCC
Q 019274          139 LNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDS---LAWTFFDLNKIYDEHKDDSATVIQADFYHA------NELMPLK  209 (343)
Q Consensus       139 ~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~d~~~~~~~~~~~~~~~i~~~~~~~------~~~~~~~  209 (343)
                      .++.+.++.++++.|+++++....+..+......   .++ +|+.+.......+++..++.+.+...      .....++
T Consensus       307 ~~~~~~~~~~v~l~~~~~~~~~~~~g~l~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~l~~~~gg~~~~~~~~~~~~~~  385 (477)
T 3nks_A          307 SAITAVSVAVVNLQYQGAHLPVQGFGHLVPSSEDPGVLGI-VYDSVAFPEQDGSPPGLRVTVMLGGSWLQTLEASGCVLS  385 (477)
T ss_dssp             HTCCEEEEEEEEEEETTCCCSSCSSEEECCTTTCSSEEEE-ECHHHHCGGGSTTTTCEEEEEEECHHHHHHHHHSSCCCC
T ss_pred             hcCCCCcEEEEEEEECCCCCCCCCceEEccCCCCCCceEE-EEeccccCCCCCCCCceEEEEEECCccccccccccCCCC
Confidence            8889999999999999987633333333322111   122 45533221111123456654433211      1112468


Q ss_pred             HHHHHHHHHHHHhhhcccCCCCceeeeEEEecCCCccccCCCCCCCCCCC----CCCCCCeEEeeccccCCCCCccchHH
Q 019274          210 DDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRG----FTSFPNLFMAGDWITTRHGSWSQERS  285 (343)
Q Consensus       210 ~~e~~~~~~~~L~~~~p~~~~~~~~~~~~~r~~~~~~~~~~g~~~~~p~~----~~~~~~L~laGd~~~~g~~~~~~ega  285 (343)
                      ++++.+.++++|+++++...  ++....+.+|+++++.|++|+...+...    ....+|||+||||+. |   .+|++|
T Consensus       386 ~~~~~~~~~~~L~~~~g~~~--~~~~~~v~rw~~a~p~~~~g~~~~~~~~~~~l~~~~~~l~l~G~~~~-G---~gv~~a  459 (477)
T 3nks_A          386 QELFQQRAQEAAATQLGLKE--MPSHCLVHLHKNCIPQYTLGHWQKLESARQFLTAHRLPLTLAGASYE-G---VAVNDC  459 (477)
T ss_dssp             HHHHHHHHHHHHHHHHCCCS--CCSEEEEEEEEEEEECCBTTHHHHHHHHHHHHHHTTCSEEECSTTTS-C---CSHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCC--CCcEEEEEEcCCccCCCCCCHHHHHHHHHHHHHhcCCCEEEEccCCC-C---CcHHHH
Confidence            99999999999999997533  5667788999999999999875322111    112468999999974 3   478999


Q ss_pred             HHHHHHHHHHHHHH
Q 019274          286 YVTGLEAANRVVDY  299 (343)
Q Consensus       286 ~~Sg~~aA~~il~~  299 (343)
                      +.||+.||+.|+++
T Consensus       460 ~~sg~~aA~~il~~  473 (477)
T 3nks_A          460 IESGRQAAVSVLGT  473 (477)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999999875

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=99.93  E-value=7.6e-24  Score=203.92  Aligned_cols=244  Identities=11%  Similarity=0.078  Sum_probs=138.1

Q ss_pred             eEeecCCCchhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhHH-Hhhhhhcc
Q 019274           52 LVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQ-ELIKNSIL  129 (343)
Q Consensus        52 ~~~~~gG~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~~-~Ll~~~~~  129 (343)
                      ..+|+||+ +.|+++|++.++++|++|++|++|++|..++  +++++|+++ |++++||.||+|+++..+. +|++....
T Consensus       213 ~~~p~GG~-~~l~~aL~~~~~~~Gg~I~~~~~V~~I~~~~--~~~~gV~~~~g~~~~ad~VV~~a~~~~~~~~Ll~~~~~  289 (501)
T 4dgk_A          213 VWFPRGGT-GALVQGMIKLFQDLGGEVVLNARVSHMETTG--NKIEAVHLEDGRRFLTQAVASNADVVHTYRDLLSQHPA  289 (501)
T ss_dssp             EEEETTHH-HHHHHHHHHHHHHTTCEEECSCCEEEEEEET--TEEEEEEETTSCEEECSCEEECCC--------------
T ss_pred             eEEeCCCC-cchHHHHHHHHHHhCCceeeecceeEEEeeC--CeEEEEEecCCcEEEcCEEEECCCHHHHHHHhcccccc
Confidence            45799995 6799999999999999999999999999998  889999997 6899999999999988765 56666433


Q ss_pred             cCchhHHhhccCccc-ceEEEEEEeccCCCCCCCcceeecCCCC--------------ccceEee-ccccccccCCCCCe
Q 019274          130 CNREEFLKVLNLASI-DVVSVKLWFDKKVTVPNVSNACSGFGDS--------------LAWTFFD-LNKIYDEHKDDSAT  193 (343)
Q Consensus       130 ~~~~~~~~~~~l~~~-~~~~v~l~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~d-~~~~~~~~~~~~~~  193 (343)
                      + ....+.+++.++. +.++++++++.+......++.+++.+..              ....+.. .+...+.+++++.+
T Consensus       290 ~-~~~~~~~~~~~~~~s~~~~~~~l~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~dp~~ap~G~~  368 (501)
T 4dgk_A          290 A-VKQSNKLQTKRMSNSLFVLYFGLNHHHDQLAHHTVCFGPRYRELIDEIFNHDGLAEDFSLYLHAPCVTDSSLAPEGCG  368 (501)
T ss_dssp             --------------CCEEEEEEEEESSCCTTSCSEEEEEECC-------------CCCEEEEEEECGGGTCGGGSSTTCE
T ss_pred             c-hhhhhhhhccccCCceeEEEecccCCccccccceeccccchhhhccccccccccccCCceecccCCCCCCCcCCCCCc
Confidence            2 2333455555554 5778899999876533334444332100              0011111 11222344545555


Q ss_pred             EEEEE-eeCCCCCCCC----CHHHHHHHHHHHHhhh-cccCCCCceeeeEEEecCCCccc-----------cCCC---CC
Q 019274          194 VIQAD-FYHANELMPL----KDDQVVAKAVSYLSKC-IKDFSTATVMDHKIRRFPKSLTH-----------FFPG---SY  253 (343)
Q Consensus       194 ~i~~~-~~~~~~~~~~----~~~e~~~~~~~~L~~~-~p~~~~~~~~~~~~~r~~~~~~~-----------~~~g---~~  253 (343)
                      .+.+. ..+...+...    .++++.+++++.|++. +|++++ .++...+. +|.++..           ..+.   ..
T Consensus       369 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~vl~~l~~~~~P~~~~-~i~~~~~~-tP~~~~~~~~~~~G~~~g~~~~~~q~~  446 (501)
T 4dgk_A          369 SYYVLAPVPHLGTANLDWTVEGPKLRDRIFAYLEQHYMPGLRS-QLVTHRMF-TPFDFRDQLNAYHGSAFSVEPVLTQSA  446 (501)
T ss_dssp             EEEEEEEECCTTTSCCCHHHHHHHHHHHHHHHHHHHTCTTHHH-HEEEEEEE-CTTTTC---------------------
T ss_pred             eEEEEEecCccccccccHHHHHHHHHHHHHHHHHHhhCCChHH-ceEEEEEC-CHHHHHHHcCCCCccccChhcchhhcc
Confidence            54332 2222222221    2567788999999875 599986 66665554 4443322           2111   11


Q ss_pred             CCCCCCC-CCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHHHhCCCC
Q 019274          254 KYMMRGF-TSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGDGS  304 (343)
Q Consensus       254 ~~~p~~~-~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~~~~~~~  304 (343)
                      ..||... ++++|||+||+++++|   ++++||+.||++||+.|++++.-|.
T Consensus       447 ~~RP~~~~t~i~gLyl~G~~t~pG---~Gv~ga~~SG~~aA~~il~dL~gG~  495 (501)
T 4dgk_A          447 WFRPHNRDKTITNLYLVGAGTHPG---AGIPGVIGSAKATAGLMLEDLIGGS  495 (501)
T ss_dssp             ---------CCTTEEECCCH---------HHHHHHHHHHHHHHHHHHHC---
T ss_pred             ccCCCCCCCCCCCEEEECCCCCCc---ccHHHHHHHHHHHHHHHHHHhcCCC
Confidence            2466543 6899999999998765   5789999999999999999997654

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=99.91  E-value=3.4e-24  Score=203.79  Aligned_cols=278  Identities=12%  Similarity=0.093  Sum_probs=189.3

Q ss_pred             CHHHHHHhHHHHHHhhhcCCcc-cccHHHHHHHHHHH-----HHhcCCCceeEeecCCCchhhhHHHHHHHHHcCCeEEc
Q 019274            7 SERLYRNVIGPLVQVGLFAPAE-QCSAAATLGILYFI-----ILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLD   80 (343)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~-~~sa~~~~~~l~~~-----~~~~~~~~~~~~~~gG~~~~l~~~l~~~l~~~G~~i~~   80 (343)
                      .++.++.++++++.+.++.+++ ++|+..++..+...     ++. ..+....+++||+ +.|+++|++.+   |++|++
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~gG~-~~l~~~l~~~l---g~~i~~  231 (453)
T 2yg5_A          157 DDAEARDNIGLFIAGGMLTKPAHSFSALQAVLMAASAGSFSHLVD-EDFILDKRVIGGM-QQVSIRMAEAL---GDDVFL  231 (453)
T ss_dssp             SCHHHHHHHHHHHCCCCCCSCTTSSBHHHHHHHHHHTTCHHHHHC-HHHHTCEEETTCT-HHHHHHHHHHH---GGGEEC
T ss_pred             CCHHHHHHHHHHHHhhcccCCcccccHHHHHHHhccCCcHhhhcc-CCCcceEEEcCCh-HHHHHHHHHhc---CCcEEc
Confidence            3455667889998888999999 99998877665431     000 0011235688995 67999998766   789999


Q ss_pred             ceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhhHHHhhhhhcccCchhHHhhccCcccceEEEEEEeccCCCCC
Q 019274           81 GRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVP  160 (343)
Q Consensus        81 ~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~~~~Ll~~~~~~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~  160 (343)
                      |++|++|..++  ++.+.|++++++++||+||+|+|+..+.+|+..+.++ ....+.++++.+.++.++++.|++++|..
T Consensus       232 ~~~V~~i~~~~--~~~v~v~~~~~~~~ad~VI~a~p~~~~~~l~~~p~lp-~~~~~~i~~~~~~~~~kv~l~~~~~~w~~  308 (453)
T 2yg5_A          232 NAPVRTVKWNE--SGATVLADGDIRVEASRVILAVPPNLYSRISYDPPLP-RRQHQMHQHQSLGLVIKVHAVYETPFWRE  308 (453)
T ss_dssp             SCCEEEEEEET--TEEEEEETTTEEEEEEEEEECSCGGGGGGSEEESCCC-HHHHHHGGGEEECCEEEEEEEESSCGGGG
T ss_pred             CCceEEEEEeC--CceEEEEECCeEEEcCEEEEcCCHHHHhcCEeCCCCC-HHHHHHHhcCCCcceEEEEEEECCCCCCC
Confidence            99999999877  5523477778889999999999999988876444332 34456678888888999999999987633


Q ss_pred             CCc-ceeecCCCCccceEeeccccccccCCCC-CeEEEEEee--CCCCCCCCCHHHHHHHHHHHHhhhcccCCCCceeee
Q 019274          161 NVS-NACSGFGDSLAWTFFDLNKIYDEHKDDS-ATVIQADFY--HANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDH  236 (343)
Q Consensus       161 ~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~i~~~~~--~~~~~~~~~~~e~~~~~~~~L~~~~p~~~~~~~~~~  236 (343)
                      ... ...+..+....+ +++.+.  +    ++ ..++.+...  .+..|..++++++.+.++++|+++||.... +++..
T Consensus       309 ~~~~g~~~~~~~~~~~-~~~~~~--~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~-~p~~~  380 (453)
T 2yg5_A          309 DGLSGTGFGASEVVQE-VYDNTN--H----EDDRGTLVAFVSDEKADAMFELSAEERKATILASLARYLGPKAE-EPVVY  380 (453)
T ss_dssp             GTEEEEEECTTSSSCE-EEECCC--T----TCSSEEEEEEEEHHHHHHHHHSCHHHHHHHHHHHHHHHHCGGGG-CCSEE
T ss_pred             CCCCceeecCCCCeEE-EEeCCC--C----CCCCCEEEEEeccHHHHHHhcCCHHHHHHHHHHHHHHHhCccCC-CccEE
Confidence            221 111211222222 345331  1    22 234433222  223455678899999999999999975322 45565


Q ss_pred             EEEecCCCc-------cccCCCCCC-CCCCCCCCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHHHhC
Q 019274          237 KIRRFPKSL-------THFFPGSYK-YMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG  301 (343)
Q Consensus       237 ~~~r~~~~~-------~~~~~g~~~-~~p~~~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~~~~  301 (343)
                      .+.+|....       +.+.||... .++...++++||||||+++...++ ++|+||+.||++||++|++.++
T Consensus       381 ~~~~W~~~~~~~G~~~~~~~~g~~~~~~~~~~~p~~~l~~aG~~~~~~~~-g~v~gA~~SG~~aA~~i~~~l~  452 (453)
T 2yg5_A          381 YESDWGSEEWTRGCYAASFDLGGLHRYGADSRTPVGPIHFSCSDIAAEGY-QHVDGAVRMGQRTAADIIARSK  452 (453)
T ss_dssp             EECCTTTCTTTCSSSCEEECTTHHHHHGGGTTCCBTTEEECCGGGCSTTT-TSHHHHHHHHHHHHHHHHHHC-
T ss_pred             EEeecCCCCCCCCCCcCcCCCCccccchHHHhCCcCceEEeecccccccc-cchHHHHHHHHHHHHHHHHHhc
Confidence            667785321       234555321 234456789999999999976677 5899999999999999998764

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=99.91  E-value=1.3e-23  Score=201.08  Aligned_cols=280  Identities=15%  Similarity=0.109  Sum_probs=193.1

Q ss_pred             CCCHHHHHHhHHHHHHhhhcCCcccccHHHHHHHHHHHHHh---------------------cCCC----ceeEeecCCC
Q 019274            5 GCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILA---------------------HQKN----FDLVWCRGTL   59 (343)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~~---------------------~~~~----~~~~~~~gG~   59 (343)
                      ++++++++.++.|++.++++.+++++|+.+++..+..+...                     ....    ....+++||+
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~  237 (478)
T 2ivd_A          158 HLGHRATQVLLDAVQTGIYAGDVEQLSVAATFPMLVKMEREHRSLILGAIRAQKAQRQAALPAGTAPKLSGALSTFDGGL  237 (478)
T ss_dssp             HTCHHHHHHTHHHHHHHHHCCCTTTBBHHHHCHHHHHHHHHHSSHHHHHHHHHHHHTCC----CCSCCCCCCEEEETTCT
T ss_pred             hhCHHHHHHHHHHHhceeecCCHHHhhHHHHhHHHHHHHHhcCcHHHHHHHhhhccccccCcccccccccccEEEECCCH
Confidence            47889999999999999999999999998776655432100                     0011    3456789995


Q ss_pred             chhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE---C-CeEEecCEEEEeeChhhHHHhhhhhcccCchhH
Q 019274           60 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---G-KETYSAGAVVLAVGISTLQELIKNSILCNREEF  135 (343)
Q Consensus        60 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~---~-g~~~~ad~VV~a~p~~~~~~Ll~~~~~~~~~~~  135 (343)
                       +.|+++|++.+   |++|+++++|++|..++  ++ +.|++   . |++++||+||+|+|++.+.+|+++  + +....
T Consensus       238 -~~l~~~l~~~l---g~~i~~~~~V~~i~~~~--~~-~~v~~~~~~~g~~~~ad~vV~a~~~~~~~~ll~~--l-~~~~~  307 (478)
T 2ivd_A          238 -QVLIDALAASL---GDAAHVGARVEGLARED--GG-WRLIIEEHGRRAELSVAQVVLAAPAHATAKLLRP--L-DDALA  307 (478)
T ss_dssp             -HHHHHHHHHHH---GGGEESSEEEEEEECC----C-CEEEEEETTEEEEEECSEEEECSCHHHHHHHHTT--T-CHHHH
T ss_pred             -HHHHHHHHHHh---hhhEEcCCEEEEEEecC--Ce-EEEEEeecCCCceEEcCEEEECCCHHHHHHHhhc--c-CHHHH
Confidence             67999999887   68999999999999877  44 46776   4 668999999999999999988864  2 23445


Q ss_pred             HhhccCcccceEEEEEEeccCCCCC-CCcceeecC--CCCccceEeeccccccccCCCCCeEEEEEeeC--CCCCCCCCH
Q 019274          136 LKVLNLASIDVVSVKLWFDKKVTVP-NVSNACSGF--GDSLAWTFFDLNKIYDEHKDDSATVIQADFYH--ANELMPLKD  210 (343)
Q Consensus       136 ~~~~~l~~~~~~~v~l~~~~~~~~~-~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~  210 (343)
                      +.++++.+.++.++++.++++++.. ..+..+...  +....+.+++... .+...+++..++.+.+..  +..+...++
T Consensus       308 ~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~~~p~g~~~l~~~~~~~~~~~~~~~~~  386 (478)
T 2ivd_A          308 ALVAGIAYAPIAVVHLGFDAGTLPAPDGFGFLVPAEEQRRMLGAIHASTT-FPFRAEGGRVLYSCMVGGARQPGLVEQDE  386 (478)
T ss_dssp             HHHHTCCBCCEEEEEEEECTTSSCCCCSSEEECCGGGCCSCCEEEEHHHH-CGGGBSTTCEEEEEEEECTTCGGGGGSCH
T ss_pred             HHHhcCCCCcEEEEEEEEccccCCCCCceEEEecCCCCCceEEEEEEccc-CCCcCCCCCEEEEEEeCCcCCccccCCCH
Confidence            6778888999999999999886532 122222211  1111222343221 122222344555443332  233456789


Q ss_pred             HHHHHHHHHHHhhhcccCCCCceeeeEEEecCCCccccCCCCCCCC----CCCCCCCCCeEEeeccccCCCCCccchHHH
Q 019274          211 DQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYM----MRGFTSFPNLFMAGDWITTRHGSWSQERSY  286 (343)
Q Consensus       211 ~e~~~~~~~~L~~~~p~~~~~~~~~~~~~r~~~~~~~~~~g~~~~~----p~~~~~~~~L~laGd~~~~g~~~~~~ega~  286 (343)
                      +++.+.+++.|+++||...  .+....+.+|+.+.+.+.+|+....    +...+ ++||||||+++. |   .+|+||+
T Consensus       387 ~~~~~~~~~~l~~~~~~~~--~p~~~~~~~w~~~~p~~~~g~~~~~~~~~~~~~~-~~~l~~aG~~~~-g---~gv~gA~  459 (478)
T 2ivd_A          387 DALAALAREELKALAGVTA--RPSFTRVFRWPLGIPQYNLGHLERVAAIDAALQR-LPGLHLIGNAYK-G---VGLNDCI  459 (478)
T ss_dssp             HHHHHHHHHHHHHHHCCCS--CCSEEEEEEESSCCBCCBTTHHHHHHHHHHHHHT-STTEEECSTTTS-C---CSHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCC--CCcEEEEEECCCcccCCCcCHHHHHHHHHHHHhh-CCCEEEEccCCC-C---CCHHHHH
Confidence            9999999999999998754  4666667889999888888853211    11112 689999999973 2   3699999


Q ss_pred             HHHHHHHHHHHHHhCC
Q 019274          287 VTGLEAANRVVDYLGD  302 (343)
Q Consensus       287 ~Sg~~aA~~il~~~~~  302 (343)
                      .||++||+.|++.++.
T Consensus       460 ~SG~~aA~~i~~~l~~  475 (478)
T 2ivd_A          460 RNAAQLADALVAGNTS  475 (478)
T ss_dssp             HHHHHHHHHHCC----
T ss_pred             HHHHHHHHHHHHhhcc
Confidence            9999999999887653

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=99.90  E-value=2e-23  Score=199.09  Aligned_cols=279  Identities=15%  Similarity=0.184  Sum_probs=195.7

Q ss_pred             CCCCHHHHHHhHHHHHHhhhcCCcccccHHHHHHHHHHHHH------hc---------------CCCceeEeecCCCchh
Q 019274            4 FGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIIL------AH---------------QKNFDLVWCRGTLREK   62 (343)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~------~~---------------~~~~~~~~~~gG~~~~   62 (343)
                      .+++.+..+.+++|++.++|+.+++++|+...+..+..+..      ..               .....+.+++||+ +.
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~  236 (470)
T 3i6d_A          158 RRVGDEVVENLIEPLLSGIYAGDIDKLSLMSTFPQFYQTEQKHRSLILGMKKTRPQGSGQQLTAKKQGQFQTLSTGL-QT  236 (470)
T ss_dssp             HHSCHHHHHHTHHHHHHHTTCSCTTTBBHHHHCGGGCC-------------------------------EEEETTCT-HH
T ss_pred             HhcCHHHHHHhccchhcEEecCCHHHhhHHHHHHHHHHHHHhcCcHHHHHHhhccccccccccccCCceEEEeCChH-HH
Confidence            35788999999999999999999999999877665422100      00               0012455678995 67


Q ss_pred             hhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhHHHhhhhhcccCchhHHhhccC
Q 019274           63 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNL  141 (343)
Q Consensus        63 l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~~~Ll~~~~~~~~~~~~~~~~l  141 (343)
                      |+++|++.+++  ++|+++++|++|..++  ++ +.|++. |++++||+||+|+|++.+.+|+.+.     +..+.+.++
T Consensus       237 l~~~l~~~l~~--~~i~~~~~V~~i~~~~--~~-~~v~~~~g~~~~ad~vi~a~p~~~~~~l~~~~-----~~~~~~~~~  306 (470)
T 3i6d_A          237 LVEEIEKQLKL--TKVYKGTKVTKLSHSG--SC-YSLELDNGVTLDADSVIVTAPHKAAAGMLSEL-----PAISHLKNM  306 (470)
T ss_dssp             HHHHHHHTCCS--EEEECSCCEEEEEECS--SS-EEEEESSSCEEEESEEEECSCHHHHHHHTTTS-----TTHHHHHTC
T ss_pred             HHHHHHHhcCC--CEEEeCCceEEEEEcC--Ce-EEEEECCCCEEECCEEEECCCHHHHHHHcCCc-----hhhHHHhcC
Confidence            99999887744  7999999999999887  44 457776 5689999999999999999887653     224567888


Q ss_pred             cccceEEEEEEeccCCCCCCC--cceeecCCCCc--cceEeeccccccccCCCCCeEEEEEee--CCCCCCCCCHHHHHH
Q 019274          142 ASIDVVSVKLWFDKKVTVPNV--SNACSGFGDSL--AWTFFDLNKIYDEHKDDSATVIQADFY--HANELMPLKDDQVVA  215 (343)
Q Consensus       142 ~~~~~~~v~l~~~~~~~~~~~--~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~e~~~  215 (343)
                      .+.++.++++.++++++....  ...+.......  ....++ +...+...+++..++.+.+.  .+..+..++++++.+
T Consensus       307 ~~~~~~~v~l~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~-s~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~  385 (470)
T 3i6d_A          307 HSTSVANVALGFPEGSVQMEHEGTGFVISRNSDFAITACTWT-NKKWPHAAPEGKTLLRAYVGKAGDESIVDLSDNDIIN  385 (470)
T ss_dssp             EEEEEEEEEEEESSTTCCCSSCSSEEEECSTTCCSEEEEEEH-HHHCGGGSCTTCEEEEEEECCSSCCGGGTSCHHHHHH
T ss_pred             CCCceEEEEEEECchhcCCCCCCeEEEccCCCCCCceEEEEE-cCcCCCcCCCCCEEEEEEECCCCCccccCCCHHHHHH
Confidence            899999999999998763321  12222211111  011222 11112223234455544332  223455778999999


Q ss_pred             HHHHHHhhhcccCCCCceeeeEEEecCCCccccCCCCCCC----CCCCCCCCCCeEEeeccccCCCCCccchHHHHHHHH
Q 019274          216 KAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKY----MMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLE  291 (343)
Q Consensus       216 ~~~~~L~~~~p~~~~~~~~~~~~~r~~~~~~~~~~g~~~~----~p~~~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~  291 (343)
                      .++++|+++||...  ++....+.+|+++++.|.+|+...    ++...++.+|||+||+++. |   .+|++|+.||++
T Consensus       386 ~~~~~l~~~~g~~~--~p~~~~~~~w~~a~p~~~~g~~~~~~~~~~~l~~~~~~l~~aG~~~~-g---~gv~~a~~sG~~  459 (470)
T 3i6d_A          386 IVLEDLKKVMNING--EPEMTCVTRWHESMPQYHVGHKQRIKELREALASAYPGVYMTGASFE-G---VGIPDCIDQGKA  459 (470)
T ss_dssp             HHHHHHGGGSCCCS--CCSEEEEEEEEEEEEECBTTHHHHHHHHHHHHHHHSTTEEECSTTTS-C---CSHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCC--CceEEEEEEcCCccCCCCCCHHHHHHHHHHHHHhhCCCEEEEeecCC-C---CCHHHHHHHHHH
Confidence            99999999998653  566778899999999999886432    1222245789999999875 2   369999999999


Q ss_pred             HHHHHHHHh
Q 019274          292 AANRVVDYL  300 (343)
Q Consensus       292 aA~~il~~~  300 (343)
                      +|++|++.+
T Consensus       460 aA~~i~~~l  468 (470)
T 3i6d_A          460 AVSDALTYL  468 (470)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999999876

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=99.90  E-value=3e-23  Score=198.43  Aligned_cols=278  Identities=13%  Similarity=0.085  Sum_probs=194.0

Q ss_pred             CCCHHHHHHhHHHHHHhhhcCCcccccHHHHHHHHHHHH----------HhcC--------------CCceeEeecCCCc
Q 019274            5 GCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFII----------LAHQ--------------KNFDLVWCRGTLR   60 (343)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~----------~~~~--------------~~~~~~~~~gG~~   60 (343)
                      ++++++.+++++|++.++|+.+++++|+..++..+..+.          ....              ....+.+++||+ 
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~-  235 (475)
T 3lov_A          157 RLGDALVEKLIEPLLSGIYAGNIDQMSTFATYPQFVANEQKAGSLFEGMRLMRPLDQLPQTPQTTIKATGQFLSLETGL-  235 (475)
T ss_dssp             HHCHHHHHHTHHHHHHGGGCCCTTTSBSTTTCHHHHHHHHHHSSHHHHHHHTCC--------------CCSEEEETTCH-
T ss_pred             HhCHHHHHHHHHHHhceeecCChHHcCHHHHHHHHHHHHHhcCcHHHHHHHhcccccccccccccccCCCcEEeeCChH-
Confidence            467899999999999999999999999876655543321          0000              123456788995 


Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhhHHHhhhhhcccCchhHHhhcc
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLN  140 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~~~~Ll~~~~~~~~~~~~~~~~  140 (343)
                      +.|+++|++.+.+  ++|+++++|++|..++  ++ +.|++.+++++||+||+|+|++.+.+|+++..   .   +.+.+
T Consensus       236 ~~l~~~l~~~l~~--~~i~~~~~V~~i~~~~--~~-~~v~~~~g~~~ad~vV~a~p~~~~~~ll~~~~---~---~~~~~  304 (475)
T 3lov_A          236 ESLIERLEEVLER--SEIRLETPLLAISRED--GR-YRLKTDHGPEYADYVLLTIPHPQVVQLLPDAH---L---PELEQ  304 (475)
T ss_dssp             HHHHHHHHHHCSS--CEEESSCCCCEEEEET--TE-EEEECTTCCEEESEEEECSCHHHHHHHCTTSC---C---HHHHT
T ss_pred             HHHHHHHHhhccC--CEEEcCCeeeEEEEeC--CE-EEEEECCCeEECCEEEECCCHHHHHHHcCccC---H---HHHhc
Confidence            6699999888754  7999999999999887  55 45777644899999999999999999887642   1   56678


Q ss_pred             CcccceEEEEEEeccCCCCCCC-cceeecCCCCcc--ceEeeccccccccCCCCCeEEEEEee--CCCCCCCCCHHHHHH
Q 019274          141 LASIDVVSVKLWFDKKVTVPNV-SNACSGFGDSLA--WTFFDLNKIYDEHKDDSATVIQADFY--HANELMPLKDDQVVA  215 (343)
Q Consensus       141 l~~~~~~~v~l~~~~~~~~~~~-~~~~~~~~~~~~--~~~~d~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~e~~~  215 (343)
                      +.+.++.++++.|++++..+.. ...+.+.+....  ...++ +...+... |+..++.+.+.  .+..+...+++++.+
T Consensus       305 ~~~~~~~~v~l~~~~~~~~~~~g~g~l~~~~~~~~~~~~~~~-s~~~~~~~-p~~~~l~~~~~~~~~~~~~~~~~e~~~~  382 (475)
T 3lov_A          305 LTTHSTATVTMIFDQQQSLPIEGTGFVVNRRAPYSITACTAI-DQKWNHSA-PDHTVLRAFVGRPGNDHLVHESDEVLQQ  382 (475)
T ss_dssp             CCEEEEEEEEEEEECCSSCSSSSSEEEECTTSSCSEEEEEEH-HHHCTTTC-TTEEEEEEEECBTTBCGGGGSCHHHHHH
T ss_pred             CCCCeEEEEEEEECCcCCCCCCCEEEEecCCCCCceEEEEEE-cccCCCCC-CCcEEEEEEeCCCCCCcccCCCHHHHHH
Confidence            8899999999999998732211 122222221110  11222 11112222 33333333332  223455678999999


Q ss_pred             HHHHHHhhhcccCCCCceeeeEEEecCCCccccCCCCCCC----CCCCCCCCCCeEEeeccccCCCCCccchHHHHHHHH
Q 019274          216 KAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKY----MMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLE  291 (343)
Q Consensus       216 ~~~~~L~~~~p~~~~~~~~~~~~~r~~~~~~~~~~g~~~~----~p~~~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~  291 (343)
                      .++++|+++||...  +++...+.+|+.+++.|.+|+...    ++...++.+||||||+++. +   .+|++|+.||+.
T Consensus       383 ~~~~~L~~~~g~~~--~p~~~~v~~w~~a~p~~~~g~~~~~~~~~~~l~~~~~~l~~aG~~~~-g---~g~~~a~~sG~~  456 (475)
T 3lov_A          383 AVLQDLEKICGRTL--EPKQVIISRLMDGLPAYTVGHADRIQRVREEVLAQYPGIYLAGLAYD-G---VGLPDCVASAKT  456 (475)
T ss_dssp             HHHHHHHHHHSSCC--CCSEEEEEEEEEEEECCCTTHHHHHHHHHHHHHHHSTTEEECSTTTS-C---SSHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCC--CCeEEEEEEcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEccCCC-C---CCHHHHHHHHHH
Confidence            99999999998643  567778899999999999886421    1222246789999999975 2   479999999999


Q ss_pred             HHHHHHHHhCC
Q 019274          292 AANRVVDYLGD  302 (343)
Q Consensus       292 aA~~il~~~~~  302 (343)
                      +|++|++.++.
T Consensus       457 aA~~i~~~l~~  467 (475)
T 3lov_A          457 MIESIELEQSH  467 (475)
T ss_dssp             HHHHHHHTC--
T ss_pred             HHHHHHHHhhc
Confidence            99999998763

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=99.89  E-value=1.6e-22  Score=194.49  Aligned_cols=277  Identities=12%  Similarity=0.039  Sum_probs=189.4

Q ss_pred             CCHHHHHHhHHHHHHhhhcCCcccccHHHHHHHHHHHH--Hhc-CCCceeEeecCCCchhhhHHHHHHHHHcC-CeEEcc
Q 019274            6 CSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFII--LAH-QKNFDLVWCRGTLREKIFEPWMDSMRTRG-CEFLDG   81 (343)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~--~~~-~~~~~~~~~~gG~~~~l~~~l~~~l~~~G-~~i~~~   81 (343)
                      +++. .+.++++++...++.+++++|+..++..+....  +.. ........++||+ +.|+++|++.+++.| ++|+++
T Consensus       199 ~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~-~~l~~~l~~~l~~~g~~~i~~~  276 (495)
T 2vvm_A          199 LSLN-ERSSLEAFILLCSGGTLENSSFGEFLHWWAMSGYTYQGCMDCLMSYKFKDGQ-SAFARRFWEEAAGTGRLGYVFG  276 (495)
T ss_dssp             CCHH-HHHHHHHHHHHHHSSCTTTSBHHHHHHHHHHTTSSHHHHHHHHHSEEETTCH-HHHHHHHHHHHHTTTCEEEESS
T ss_pred             CCHH-HHHHHHHHHHHhcCCCcchhhHHHHHHHHHHcCCCHHHHHhhhceEEeCCCH-HHHHHHHHHHhhhcCceEEEeC
Confidence            4544 467999999999999999999988876654210  000 0011233568995 679999999999998 999999


Q ss_pred             eeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhHHHhhhhhcccCchhHHhhccCcccceEEEEEEeccCCCCC
Q 019274           82 RRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVP  160 (343)
Q Consensus        82 ~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~~~Ll~~~~~~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~  160 (343)
                      ++|++|..++  +.+ .|++. |++++||+||+|+|+..+.+|...+.++ ....+.++.+.+.++.++++.|+++++ .
T Consensus       277 ~~V~~i~~~~--~~v-~v~~~~g~~~~ad~vI~a~~~~~l~~i~~~p~lp-~~~~~ai~~~~~~~~~kv~l~~~~~~~-~  351 (495)
T 2vvm_A          277 CPVRSVVNER--DAA-RVTARDGREFVAKRVVCTIPLNVLSTIQFSPALS-TERISAMQAGHVSMCTKVHAEVDNKDM-R  351 (495)
T ss_dssp             CCEEEEEECS--SSE-EEEETTCCEEEEEEEEECCCGGGGGGSEEESCCC-HHHHHHHHHCCCCCCEEEEEEESCGGG-G
T ss_pred             CEEEEEEEcC--CEE-EEEECCCCEEEcCEEEECCCHHHHhheeeCCCCC-HHHHHHHHhcCCCceeEEEEEECCccC-C
Confidence            9999999876  444 57776 5689999999999999998875333332 344567788888899999999998765 2


Q ss_pred             CCcceeecCCCCccceEeeccccccccCCCCCeEEEEEeeCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCceeeeEEEe
Q 019274          161 NVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRR  240 (343)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~L~~~~p~~~~~~~~~~~~~r  240 (343)
                       .+..+...+....+ +++.... +    ++..++.. +.....  .+++++..+.+++.|++++|+..  ++....+.+
T Consensus       352 -~~~g~~~~~~~~~~-~~~~~~~-~----~~~~vl~~-~~~~~~--~~~~~e~~~~~~~~L~~~~~~~~--~~~~~~~~~  419 (495)
T 2vvm_A          352 -SWTGIAYPFNKLCY-AIGDGTT-P----AGNTHLVC-FGNSAN--HIQPDEDVRETLKAVGQLAPGTF--GVKRLVFHN  419 (495)
T ss_dssp             -GEEEEECSSCSSCE-EEEEEEC-T----TSCEEEEE-EECSTT--CCCTTTCHHHHHHHHHTTSTTSC--CEEEEEECC
T ss_pred             -CceeEecCCCCcEE-EecCCCC-C----CCCeEEEE-EeCccc--cCCCHHHHHHHHHHHHHhcCCCC--CceEEEEeE
Confidence             22111111222222 3332211 1    23345443 433221  13455677889999999998743  566666778


Q ss_pred             cCC------CccccCCCCCC-CCCCCCCCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHHHhCC
Q 019274          241 FPK------SLTHFFPGSYK-YMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGD  302 (343)
Q Consensus       241 ~~~------~~~~~~~g~~~-~~p~~~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~~~~~  302 (343)
                      |..      ++..+.||... .++...++.+||||||+++.+.++ ++|+||+.||++||++|++.++.
T Consensus       420 W~~dp~~~g~y~~~~~g~~~~~~~~l~~p~~~l~fAGe~t~~~~~-g~veGAi~SG~raA~~i~~~l~~  487 (495)
T 2vvm_A          420 WVKDEFAKGAWFFSRPGMVSECLQGLREKHGGVVFANSDWALGWR-SFIDGAIEEGTRAARVVLEELGT  487 (495)
T ss_dssp             TTTCTTTSSSSCCCCTTHHHHHHHHHHCCBTTEEECCGGGCSSST-TSHHHHHHHHHHHHHHHHHHHCC
T ss_pred             cCCCCCCCCCccCcCCCcchhhHHHHhCcCCCEEEechhhhcCCc-eEEEhHHHHHHHHHHHHHHHhcc
Confidence            853      33334555431 223334578999999999986677 69999999999999999998864

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=99.89  E-value=8e-23  Score=196.94  Aligned_cols=282  Identities=13%  Similarity=0.112  Sum_probs=191.0

Q ss_pred             CCCHHHHHHhHHHHHHhhhcCCcccccHHHHHHHHHHHH--------------HhcC---------------CCceeEee
Q 019274            5 GCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFII--------------LAHQ---------------KNFDLVWC   55 (343)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~--------------~~~~---------------~~~~~~~~   55 (343)
                      ++++++++++++|++.++++.+++++|+.++++.+....              +...               ......++
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (504)
T 1sez_A          159 HFGKEVVDYLIDPFVAGTCGGDPDSLSMHHSFPELWNLEKRFGSVILGAIRSKLSPKNEKKQGPPKTSANKKRQRGSFSF  238 (504)
T ss_dssp             HHCHHHHHTTHHHHHHHHHSCCGGGSBHHHHCHHHHHHHHHTSCHHHHHHHHTTC----------CCCSCCSTTCSCBEE
T ss_pred             HcCHHHHHHHHHHHHccccCCChHHhhHHHHhHHHHHHHHHhCCHHHHHHHhhhcccccccccccchhhccccCCceEee
Confidence            478899999999999999999999999987655443321              0000               01124567


Q ss_pred             cCCCchhhhHHHHHHHHHcC-CeEEcceeeeEEEecCCCCe----EEEEEEC---C---eEEecCEEEEeeChhhHHHhh
Q 019274           56 RGTLREKIFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCC----ISDVVCG---K---ETYSAGAVVLAVGISTLQELI  124 (343)
Q Consensus        56 ~gG~~~~l~~~l~~~l~~~G-~~i~~~~~V~~I~~~~~~g~----v~~V~~~---g---~~~~ad~VV~a~p~~~~~~Ll  124 (343)
                      +||+ +.|+++|++.+   | ++|++|++|++|..+++ +.    ++.|++.   |   ++++||+||+|+|+..+.+|+
T Consensus       239 ~GG~-~~l~~~l~~~l---~~~~i~~~~~V~~I~~~~~-~~~~~~~~~v~~~~~~g~~~~~~~ad~VI~a~p~~~l~~ll  313 (504)
T 1sez_A          239 LGGM-QTLTDAICKDL---REDELRLNSRVLELSCSCT-EDSAIDSWSIISASPHKRQSEEESFDAVIMTAPLCDVKSMK  313 (504)
T ss_dssp             TTCT-HHHHHHHHTTS---CTTTEETTCCEEEEEEECS-SSSSSCEEEEEEBCSSSSCBCCCEESEEEECSCHHHHHTSE
T ss_pred             CcHH-HHHHHHHHhhc---ccceEEcCCeEEEEEecCC-CCcccceEEEEEcCCCCccceeEECCEEEECCCHHHHHHHh
Confidence            8995 67999998765   4 79999999999998773 31    2456553   3   478999999999999999887


Q ss_pred             hh---hcccCchhHHhhccCcccceEEEEEEeccCCCCCC--CcceeecCCC-----CccceEeeccccccccCCCCCeE
Q 019274          125 KN---SILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPN--VSNACSGFGD-----SLAWTFFDLNKIYDEHKDDSATV  194 (343)
Q Consensus       125 ~~---~~~~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~--~~~~~~~~~~-----~~~~~~~d~~~~~~~~~~~~~~~  194 (343)
                      ..   ..++ +   ..+.++.+.++.++++.|+++++...  .+..++....     .....+++ +...+...+++..+
T Consensus       314 ~~~~~~~~~-~---~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~-s~~~~~~~p~g~~~  388 (504)
T 1sez_A          314 IAKRGNPFL-L---NFIPEVDYVPLSVVITTFKRENVKYPLEGFGVLVPSKEQQHGLKTLGTLFS-SMMFPDRAPNNVYL  388 (504)
T ss_dssp             EESSSSBCC-C---TTSCCCCEEEEEEEEEEEEGGGBSSCCCSSEEECCGGGGGGTCCSSEEEEH-HHHCGGGSCTTEEE
T ss_pred             hcccCCccc-H---HHHhcCCCCceEEEEEEEchhhcCCCCCceEEEcCCCCCCCCCccceEEee-ccccCCcCCCCCEE
Confidence            42   1121 1   12566778889999999998765321  1222222110     00111222 22223233223334


Q ss_pred             EEEEee--CCCCCCCCCHHHHHHHHHHHHhhhcccCCCCceeeeEEEecCCCccccCCCCCCCCC---CCCCCCCCeEEe
Q 019274          195 IQADFY--HANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMM---RGFTSFPNLFMA  269 (343)
Q Consensus       195 i~~~~~--~~~~~~~~~~~e~~~~~~~~L~~~~p~~~~~~~~~~~~~r~~~~~~~~~~g~~~~~p---~~~~~~~~L~la  269 (343)
                      +.+...  .+..+..++++++.+.++++|++++|...  +++...+.+|+.+++.|.+|+....+   ...++++|||||
T Consensus       389 l~~~~~g~~~~~~~~~~~ee~~~~v~~~L~~~~g~~~--~p~~~~~~~w~~~~p~~~~g~~~~~~~~~~~~~~~~~l~~a  466 (504)
T 1sez_A          389 YTTFVGGSRNRELAKASRTELKEIVTSDLKQLLGAEG--EPTYVNHLYWSKAFPLYGHNYDSVLDAIDKMEKNLPGLFYA  466 (504)
T ss_dssp             EEEEEESTTCGGGTTCCHHHHHHHHHHHHHHHHCBCS--CCSSEEEEEEEEEEECCCTTHHHHHHHHHHHHHHSTTEEEC
T ss_pred             EEEEeCCCCcccccCCCHHHHHHHHHHHHHHHhCCCC--CCeEEEEeECCCCCCccCcCHHHHHHHHHHHHHhCCCEEEE
Confidence            333222  22346678899999999999999998743  56677788999998989888632211   122467999999


Q ss_pred             eccccCCCCCccchHHHHHHHHHHHHHHHHhCC
Q 019274          270 GDWITTRHGSWSQERSYVTGLEAANRVVDYLGD  302 (343)
Q Consensus       270 Gd~~~~g~~~~~~ega~~Sg~~aA~~il~~~~~  302 (343)
                      |+++.   + .+|++|+.||++||++|++.++.
T Consensus       467 G~~~~---g-~~v~gai~sG~~aA~~il~~l~~  495 (504)
T 1sez_A          467 GNHRG---G-LSVGKALSSGCNAADLVISYLES  495 (504)
T ss_dssp             CSSSS---C-SSHHHHHHHHHHHHHHHHHHHSS
T ss_pred             eecCC---C-CCHHHHHHHHHHHHHHHHHHHhh
Confidence            99975   2 48999999999999999998864

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=99.88  E-value=3.1e-22  Score=191.36  Aligned_cols=280  Identities=12%  Similarity=0.099  Sum_probs=178.0

Q ss_pred             HHhHHHHHH-hhhcCCcccccHHHHHHHHHHHHHhcCCCceeEeecCCCchhhhHHHHHHHHHc--------CCeEEcce
Q 019274           12 RNVIGPLVQ-VGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTR--------GCEFLDGR   82 (343)
Q Consensus        12 ~~~~~~~~~-~~~~~~~~~~sa~~~~~~l~~~~~~~~~~~~~~~~~gG~~~~l~~~l~~~l~~~--------G~~i~~~~   82 (343)
                      +.++++++. ..++.+++..|+..+... ..+. .......+.+++||+ +.|+++|++.+.+.        |++|++++
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~-~~~~-~~~~~~~~~~~~gG~-~~l~~~l~~~l~~~~~~~~~i~~~~i~~~~  235 (472)
T 1b37_A          159 DMVVDYYKFDYEFAEPPRVTSLQNTVPL-ATFS-DFGDDVYFVADQRGY-EAVVYYLAGQYLKTDDKSGKIVDPRLQLNK  235 (472)
T ss_dssp             HHHHHHHHTHHHHSSCGGGBBSTTTSSC-HHHH-HHCSEEEEECCTTCT-THHHHHHHHTTSCBCTTTCCBCCTTEESSC
T ss_pred             HHHHHHHHHhhhhcccccccchhhcccc-cccc-ccCCceeeeecCCcH-HHHHHHHHHhccccccccccccccEEEcCC
Confidence            445555553 334556666664322111 0010 111112233347895 67999999888665        78999999


Q ss_pred             eeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhHHHhhh--hhcccCchhHHhhccCcccceEEEEEEeccCCCC
Q 019274           83 RVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQELIK--NSILCNREEFLKVLNLASIDVVSVKLWFDKKVTV  159 (343)
Q Consensus        83 ~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~~~Ll~--~~~~~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~  159 (343)
                      +|++|..++  +++. |++. |++++||+||+|+|+..+.+++.  .+.++ ....+.++++.+.++.++++.|++++|.
T Consensus       236 ~V~~i~~~~--~~v~-v~~~~g~~~~ad~vI~a~~~~~l~~~~~~~~p~Lp-~~~~~ai~~~~~~~~~kv~l~~~~~~w~  311 (472)
T 1b37_A          236 VVREIKYSP--GGVT-VKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLP-TWKVRAIYQFDMAVYTKIFLKFPRKFWP  311 (472)
T ss_dssp             CEEEEEECS--SCEE-EEETTSCEEEESEEEECSCHHHHHTTSSEEESCCC-HHHHHHHHHSEEECEEEEEEECSSCCSC
T ss_pred             EEEEEEEcC--CcEE-EEECCCCEEEcCEEEEecCHHHhccCCeeECCCCC-HHHHHHHHhcCCcceeEEEEECCCcCCC
Confidence            999999887  5554 7776 56899999999999999987542  22232 3445777888888889999999998874


Q ss_pred             CCC-cceee-cCCC-CccceEeeccccccccCCCCCeEEEEEeeC--CCCCCCCCHHHHHHHHHHHHhhhcccCCCCcee
Q 019274          160 PNV-SNACS-GFGD-SLAWTFFDLNKIYDEHKDDSATVIQADFYH--ANELMPLKDDQVVAKAVSYLSKCIKDFSTATVM  234 (343)
Q Consensus       160 ~~~-~~~~~-~~~~-~~~~~~~d~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~e~~~~~~~~L~~~~p~~~~~~~~  234 (343)
                      ..+ ...+. .... .... ++..  ..+. . +++.++.+.+..  +..|..++++++.+.+++.|+++||+....+++
T Consensus       312 ~~~~~~~~~~~~~~~~~~~-~~~~--~~~~-~-p~~~~l~~~~~~~~a~~~~~~~~~e~~~~~l~~L~~~~Pg~~~~~~~  386 (472)
T 1b37_A          312 EGKGREFFLYASSRRGYYG-VWQE--FEKQ-Y-PDANVLLVTVTDEESRRIEQQSDEQTKAEIMQVLRKMFPGKDVPDAT  386 (472)
T ss_dssp             CSTTCSEEEECCSSTTSSC-EEEE--CTTT-S-TTCCEEEEEEEHHHHHHHHTSCHHHHHHHHHHHHHHHCTTSCCCCCS
T ss_pred             CCCCcceEEecccCCccce-eeec--ccCC-C-CCCCEEEEEechHHHHHHHhCCHHHHHHHHHHHHHHHcCCCCCCCCc
Confidence            322 11111 1111 1111 2221  0111 1 344554443322  123556789999999999999999885322455


Q ss_pred             eeEEEecC------CCccccCCCCCC-CCCCCCCCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHHHhCCCC
Q 019274          235 DHKIRRFP------KSLTHFFPGSYK-YMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGDGS  304 (343)
Q Consensus       235 ~~~~~r~~------~~~~~~~~g~~~-~~p~~~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~~~~~~~  304 (343)
                      ...+.+|.      .++..+.||... .++...+|++||||||++++++++ ++|+||+.||++||++|++.++.++
T Consensus       387 ~~~~~~W~~~~~~~G~~~~~~~g~~~~~~~~l~~p~~~l~fAG~~t~~~~~-g~v~GA~~SG~~aA~~i~~~l~~~~  462 (472)
T 1b37_A          387 DILVPRWWSDRFYKGTFSNWPVGVNRYEYDQLRAPVGRVYFTGEHTSEHYN-GYVHGAYLSGIDSAEILINCAQKKM  462 (472)
T ss_dssp             EEECCCTTTCTTTSSSEEECBTTCCHHHHHHHHCCBTTEEECSGGGCTTTT-TSHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             eEEecccCCCCCCCcccCCCCCCCChhHHHHHhccCCcEEEeecccCCCCC-CchhHHHHHHHHHHHHHHHHHHhCc
Confidence            55566672      233334555432 233445788999999999987666 6999999999999999999876433

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=99.87  E-value=1.2e-20  Score=172.84  Aligned_cols=228  Identities=11%  Similarity=0.098  Sum_probs=158.8

Q ss_pred             eecCCCchhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhHHHhhhhh--ccc
Q 019274           54 WCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQELIKNS--ILC  130 (343)
Q Consensus        54 ~~~gG~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~~~Ll~~~--~~~  130 (343)
                      ...+|+ +.++++|++.+   |++|+++++|++|..++  ++ +.|+++ |++++||.||+|+|++.+.+|+.+.  .+ 
T Consensus       106 ~~~~g~-~~l~~~l~~~~---g~~i~~~~~V~~i~~~~--~~-~~v~~~~g~~~~ad~vV~A~p~~~~~~ll~~~~~~l-  177 (342)
T 3qj4_A          106 VAPQGI-SSIIKHYLKES---GAEVYFRHRVTQINLRD--DK-WEVSKQTGSPEQFDLIVLTMPVPEILQLQGDITTLI-  177 (342)
T ss_dssp             ECTTCT-THHHHHHHHHH---TCEEESSCCEEEEEECS--SS-EEEEESSSCCEEESEEEECSCHHHHTTCBSTHHHHS-
T ss_pred             ecCCCH-HHHHHHHHHhc---CCEEEeCCEEEEEEEcC--CE-EEEEECCCCEEEcCEEEECCCHHHHHHHhccccccc-
Confidence            346785 56888888765   89999999999999877  44 457776 5568999999999999999888642  22 


Q ss_pred             CchhHHhhccCcccceEEEEEEeccCCCCCCCcceeecCC-CCccceEeeccccccccCCCCCeEEEEEee--CCCCCCC
Q 019274          131 NREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFG-DSLAWTFFDLNKIYDEHKDDSATVIQADFY--HANELMP  207 (343)
Q Consensus       131 ~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~i~~~~~--~~~~~~~  207 (343)
                      ++...+.+.++.|.++.++++.|+++++.+.+...++..+ ....|.+++ +.......++++..+.+...  .+.++.+
T Consensus       178 ~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~k~~r~~~~~~~~~v~~~~~~~~~~~~~  256 (342)
T 3qj4_A          178 SECQRQQLEAVSYSSRYALGLFYEAGTKIDVPWAGQYITSNPCIRFVSID-NKKRNIESSEIGPSLVIHTTVPFGVTYLE  256 (342)
T ss_dssp             CHHHHHHHHTCCBCCEEEEEEECSSCC--CCSCSEEECSSCSSEEEEEEH-HHHTTCCCC-CCCEEEEEECHHHHHHTTT
T ss_pred             CHHHHHHHhcCCccccEEEEEEECCCCccCCceeeEEccCCcceEEEEcc-ccCCCCCCCCCCceEEEECCHHHHHHhhc
Confidence            2344677889999999999999998755444432222112 223443333 32211111123333322222  2234667


Q ss_pred             CCHHHHHHHHHHHHhhhcccCCCCceeeeEEEecCCCccccCCCCCCCCCCCC--CCCCCeEEeeccccCCCCCccchHH
Q 019274          208 LKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGF--TSFPNLFMAGDWITTRHGSWSQERS  285 (343)
Q Consensus       208 ~~~~e~~~~~~~~L~~~~p~~~~~~~~~~~~~r~~~~~~~~~~g~~~~~p~~~--~~~~~L~laGd~~~~g~~~~~~ega  285 (343)
                      .+++++.+.++++|++++|...  ++++..++||+.++|.+...   .++...  ...+||++||||+.+    .++|+|
T Consensus       257 ~~~~~~~~~~~~~l~~~~g~~~--~p~~~~v~rW~~a~p~~~~~---~~~~~~~~~~~~~l~laGd~~~g----~~v~~a  327 (342)
T 3qj4_A          257 HSIEDVQELVFQQLENILPGLP--QPIATKCQKWRHSQVTNAAA---NCPGQMTLHHKPFLACGGDGFTQ----SNFDGC  327 (342)
T ss_dssp             SCHHHHHHHHHHHHHHHSCSCC--CCSEEEEEEETTCSBSSCCS---SSCSCEEEETTTEEEECSGGGSC----SSHHHH
T ss_pred             CCHHHHHHHHHHHHHHhccCCC--CCceeeeccccccccccccC---CCcceeEecCCccEEEEccccCC----CCccHH
Confidence            8899999999999999999554  57788899999999877542   123222  356899999999863    589999


Q ss_pred             HHHHHHHHHHHHHH
Q 019274          286 YVTGLEAANRVVDY  299 (343)
Q Consensus       286 ~~Sg~~aA~~il~~  299 (343)
                      +.||+.||+.|+..
T Consensus       328 i~sg~~aa~~i~~~  341 (342)
T 3qj4_A          328 ITSALCVLEALKNY  341 (342)
T ss_dssp             HHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999999764

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=99.84  E-value=9.7e-21  Score=182.55  Aligned_cols=284  Identities=12%  Similarity=0.072  Sum_probs=185.9

Q ss_pred             CCCCHHHHHHhHHHHHHhhhcCCcccccHHHHHHH---------HHHHHHhcCC-----CceeEe-ecCCCchhhhHHHH
Q 019274            4 FGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGI---------LYFIILAHQK-----NFDLVW-CRGTLREKIFEPWM   68 (343)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~---------l~~~~~~~~~-----~~~~~~-~~gG~~~~l~~~l~   68 (343)
                      +++++++++.++.|++.++++.+++++++.++...         +.........     ...+.+ ++||+ +.|+++|+
T Consensus       151 ~~~g~~l~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~-~~l~~~l~  229 (513)
T 4gde_A          151 RMMGTGIADLFMRPYNFKVWAVPTTKMQCAWLGERVAAPNLKAVTTNVILGKTAGNWGPNATFRFPARGGT-GGIWIAVA  229 (513)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHSSCGGGBCSGGGCSSCCCCCHHHHHHHHHHTCCCCSCBTTBEEEEESSSHH-HHHHHHHH
T ss_pred             HhhhhhhhhhhcchhhhhhccCChHHhhHHHHHHhhcccchhhhhhhhhhcccccccccccceeecccCCH-HHHHHHHH
Confidence            45678999999999999999999999997654321         1111111111     122333 47995 67999999


Q ss_pred             HHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhhHHHhhhhhcccCchhHHhhccCcccceEE
Q 019274           69 DSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVS  148 (343)
Q Consensus        69 ~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~~~~Ll~~~~~~~~~~~~~~~~l~~~~~~~  148 (343)
                      +.|++.|++|++|++|++|..++  +++  +..+|++++||+||+|+|++.+.+++.+.     ........+.|.++.+
T Consensus       230 ~~l~~~g~~i~~~~~V~~I~~~~--~~v--~~~~G~~~~ad~vI~t~P~~~l~~~l~~~-----~~~~~~~~l~y~~~~~  300 (513)
T 4gde_A          230 NTLPKEKTRFGEKGKVTKVNANN--KTV--TLQDGTTIGYKKLVSTMAVDFLAEAMNDQ-----ELVGLTKQLFYSSTHV  300 (513)
T ss_dssp             HTSCGGGEEESGGGCEEEEETTT--TEE--EETTSCEEEEEEEEECSCHHHHHHHTTCH-----HHHHHHTTCCEEEEEE
T ss_pred             HHHHhcCeeeecceEEEEEEccC--CEE--EEcCCCEEECCEEEECCCHHHHHHhcCch-----hhHhhhhcccCCceEE
Confidence            99999999999999999999876  543  23347899999999999999999888753     2234557788999988


Q ss_pred             EEEEeccCCCCCCCcceeecC-CCCc-cceEeeccccccccCCCC---------------------CeEEEEEe--eCCC
Q 019274          149 VKLWFDKKVTVPNVSNACSGF-GDSL-AWTFFDLNKIYDEHKDDS---------------------ATVIQADF--YHAN  203 (343)
Q Consensus       149 v~l~~~~~~~~~~~~~~~~~~-~~~~-~~~~~d~~~~~~~~~~~~---------------------~~~i~~~~--~~~~  203 (343)
                      +.+.++...........++-+ +... ...+...++..+...+++                     ...+.+.+  ....
T Consensus       301 v~l~~~~~~~~~~~~~~~~y~~~~~~~f~Ri~~~~n~sp~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (513)
T 4gde_A          301 IGVGVRGSRPERIGDKCWLYFPEDNCPFYRATIFSNYSPYNQPEASAALPTMQLADGSRPQSTEAKEGPYWSIMLEVSES  380 (513)
T ss_dssp             EEEEEESSCCTTTTTCCEEECCSTTCSCSEEECGGGTCGGGSCCTTCCEECCEETTSCCCSCCSEECCCEEEEEEEEEEB
T ss_pred             EEEEEeccccccccccceeeccCCCCceeEEEecCCCCcccCCCCCceEEEEEeccCCCcccccCCcceEEEEEecccch
Confidence            999887754321111111111 1110 000111111111111111                     11111111  1223


Q ss_pred             CCCCCCHHHHHHHHHHHHhhhcccCCCCceeeeEEEecCCCccccCCCCCCC----CCCCCCCCCCeEEeeccccCCCCC
Q 019274          204 ELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKY----MMRGFTSFPNLFMAGDWITTRHGS  279 (343)
Q Consensus       204 ~~~~~~~~e~~~~~~~~L~~~~p~~~~~~~~~~~~~r~~~~~~~~~~g~~~~----~p~~~~~~~~L~laGd~~~~g~~~  279 (343)
                      ++..++++++++.++++|.++.+-....+++...+.||++++|.|+.|+...    ++..+  -+|||++|-+-.-.|..
T Consensus       381 ~~~~~~de~l~~~~~~~L~~~~~i~~~~~i~~~~v~r~~~ayP~y~~~~~~~~~~~~~~l~--~~~l~~~GR~g~~~Y~~  458 (513)
T 4gde_A          381 SMKPVNQETILADCIQGLVNTEMLKPTDEIVSTYHRRFDHGYPTPTLEREGTLTQILPKLQ--DKDIWSRGRFGSWRYEV  458 (513)
T ss_dssp             TTBCCCTTTHHHHHHHHHHHTTSSCTTCEEEEEEEEEEEEEEECCBTTHHHHHHHHHHHHH--HTTEEECSTTTTCCGGG
T ss_pred             hccCCCHHHHHHHHHHHHHHhcCCCCccceEEEEEEECCCeecccCHhHHHHHHHHHHHHh--hcCcEEecCCcccCcCC
Confidence            4556789999999999999998755444788888999999999999886532    12222  26999999652112221


Q ss_pred             ccchHHHHHHHHHHHHHHHH
Q 019274          280 WSQERSYVTGLEAANRVVDY  299 (343)
Q Consensus       280 ~~~ega~~Sg~~aA~~il~~  299 (343)
                      +.|+.|++||+.||+.|+..
T Consensus       459 ~n~D~a~~~g~~aa~~I~~g  478 (513)
T 4gde_A          459 GNQDHSFMLGVEAVDNIVNG  478 (513)
T ss_dssp             CSHHHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHHHHcC
Confidence            47999999999999999973

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=99.83  E-value=1.1e-20  Score=181.02  Aligned_cols=280  Identities=11%  Similarity=0.036  Sum_probs=184.9

Q ss_pred             CCCHHHHHHhHHHHHHhhhcCCcccccHHHHH---------HHHHHHHHhcC------CCceeEeec-CCCchhhhHHHH
Q 019274            5 GCSERLYRNVIGPLVQVGLFAPAEQCSAAATL---------GILYFIILAHQ------KNFDLVWCR-GTLREKIFEPWM   68 (343)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~---------~~l~~~~~~~~------~~~~~~~~~-gG~~~~l~~~l~   68 (343)
                      ++++++++++++|++.++|+.+++++|+.+++         .++...+ ...      ....+.||. ||+ +.|+++|+
T Consensus       146 ~~g~~~~~~~~~p~~~~v~~~~~~~ls~~~~~~r~~~~~l~~~~~~~~-~~~~~~~~~~~~~f~yp~~gG~-~~l~~~la  223 (484)
T 4dsg_A          146 QFGEGIADIFMRPYNFKVWAVPPCLMSTEWVEERVAPVDLERIRRNIQ-ENRDDLGWGPNATFRFPQRGGT-GIIYQAIK  223 (484)
T ss_dssp             HHHHHHCCCCCHHHHHHHHSSCGGGBCSSSCTTTSCCCCHHHHHHHHH-HTCCCCCCSTTSEEEEESSSCT-HHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHhhhcCCCHHHhcHHHHhccccCCCHHHHHHHHh-hcccccCCCccceEEeecCCCH-HHHHHHHH
Confidence            46788899999999999999999999986432         2222222 211      122356665 885 67999999


Q ss_pred             HHHHHcCCeEEcc--eeeeEEEecCCCCeEEEEEE-CCeEEecCEEEEeeChhhHHHhhhhh--cccCchhHHhhccCcc
Q 019274           69 DSMRTRGCEFLDG--RRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQELIKNS--ILCNREEFLKVLNLAS  143 (343)
Q Consensus        69 ~~l~~~G~~i~~~--~~V~~I~~~~~~g~v~~V~~-~g~~~~ad~VV~a~p~~~~~~Ll~~~--~~~~~~~~~~~~~l~~  143 (343)
                      +.+.+  .+|+++  ++|++|..++  ++|   ++ +|++++||+||+|+|++.+.+++.+.  .+ ++...+.+.++.|
T Consensus       224 ~~l~~--~~i~~~~~~~V~~I~~~~--~~v---~~~~G~~~~ad~VI~a~p~~~~~~ll~~~~~~~-~~~~~~~l~~l~y  295 (484)
T 4dsg_A          224 EKLPS--EKLTFNSGFQAIAIDADA--KTI---TFSNGEVVSYDYLISTVPFDNLLRMTKGTGFKG-YDEWPAIADKMVY  295 (484)
T ss_dssp             HHSCG--GGEEECGGGCEEEEETTT--TEE---EETTSCEEECSEEEECSCHHHHHHHEECSSCTT-GGGHHHHHHHCCE
T ss_pred             hhhhh--CeEEECCCceeEEEEecC--CEE---EECCCCEEECCEEEECCCHHHHHHHhhccCCCC-CHHHHHHHhCCCc
Confidence            98854  289999  5699999877  543   34 46789999999999999999988641  12 1344566788999


Q ss_pred             cceEEEEEEeccCCCC--CCCcceeecCCCCccceEeeccccccccCCCCCeEEEEEeeCCCCCCCCCHHHHHHHHHHHH
Q 019274          144 IDVVSVKLWFDKKVTV--PNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYL  221 (343)
Q Consensus       144 ~~~~~v~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~L  221 (343)
                      .++.++++.++++...  ...+..++.........+...++..+...+++.+++.+.+... .....+++++++.++++|
T Consensus       296 ~s~~~v~l~~~~~~~~~~~~~~~i~vp~~~~~~~ri~~~s~~~p~~ap~g~~~l~~e~~~~-~~~~~~d~~l~~~a~~~L  374 (484)
T 4dsg_A          296 SSTNVIGIGVKGTPPPHLKTACWLYFPEDTSPFYRATVFSNYSKYNVPEGHWSLMLEVSES-KYKPVNHSTLIEDCIVGC  374 (484)
T ss_dssp             EEEEEEEEEEESCCCGGGTTCCEEECCSTTCSCSEEECGGGTCGGGSCTTEEEEEEEEEEB-TTBCCCTTSHHHHHHHHH
T ss_pred             CceEEEEEEEcCCCcccCCCCeEEEEEcCCCeEEEEEeecCCCcccCCCCeEEEEEEEecC-cCCcCCHHHHHHHHHHHH
Confidence            9999999999987431  1122333321111111122223333433323445544444333 334568899999999999


Q ss_pred             hhhcccCCCCceeeeEEEecCCCccccCCCCCCCC----CCCCCCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHH
Q 019274          222 SKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYM----MRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVV  297 (343)
Q Consensus       222 ~~~~p~~~~~~~~~~~~~r~~~~~~~~~~g~~~~~----p~~~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il  297 (343)
                      .++..--.+..++...+.||+.++|.|++|+....    .... .. ||+++|.+-.-.|++.+|+.|+.||..||+.|+
T Consensus       375 ~~~~~~~~~~~~~~~~v~r~~~~yP~y~~~~~~~~~~~~~~l~-~~-~l~~~Gr~g~~~y~v~~~d~~i~sg~~aa~~i~  452 (484)
T 4dsg_A          375 LASNLLLPEDLLVSKWHYRIEKGYPTPFIGRNNLLEKAQPELM-SR-CIYSRGRFGAWRYEVGNQDHSFMQGVEAIDHVL  452 (484)
T ss_dssp             HHTTSCCTTCCEEEEEEEEEEEEEECCBTTHHHHHHHHHHHHH-HT-TEEECSTTTTCCGGGCSHHHHHHHHHHHHHHHT
T ss_pred             HHcCCCCccceEEEEEEEEeCccccCCCccHHHHHHHHHHHHH-hC-CcEeecCCcccccCCCChHHHHHHHHHHHHHHH
Confidence            99853212213555678899999999999865321    1111 23 999999963212321479999999999999997

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=99.80  E-value=5.7e-19  Score=169.39  Aligned_cols=235  Identities=11%  Similarity=0.104  Sum_probs=154.4

Q ss_pred             eeEeecCCCchhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-C---eEEecCEEEEeeChhhHHHhhhh
Q 019274           51 DLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-K---ETYSAGAVVLAVGISTLQELIKN  126 (343)
Q Consensus        51 ~~~~~~gG~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g---~~~~ad~VV~a~p~~~~~~Ll~~  126 (343)
                      .+.+++||+ +.|+++|++.+.+  ++|++|++|++|..++  ++|. |++. |   ++++||+||+|+|+..+.+|.. 
T Consensus       230 ~~~~~~gG~-~~l~~~l~~~l~~--~~i~~~~~V~~i~~~~--~~v~-v~~~~g~~~~~~~ad~vI~a~p~~~l~~l~~-  302 (489)
T 2jae_A          230 MMFTPVGGM-DRIYYAFQDRIGT--DNIVFGAEVTSMKNVS--EGVT-VEYTAGGSKKSITADYAICTIPPHLVGRLQN-  302 (489)
T ss_dssp             SEEEETTCT-THHHHHHHHHHCG--GGEETTCEEEEEEEET--TEEE-EEEEETTEEEEEEESEEEECSCHHHHTTSEE-
T ss_pred             cEEeecCCH-HHHHHHHHHhcCC--CeEEECCEEEEEEEcC--CeEE-EEEecCCeEEEEECCEEEECCCHHHHHhCcc-
Confidence            456688995 6799999988743  7899999999999887  5554 6553 4   5789999999999998877755 


Q ss_pred             hcccCchhHHhhccCcccceEEEEEEeccCCCCCC-C-cceeecCCCCccceEeeccccccccCCCCCeEEEEEee--CC
Q 019274          127 SILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPN-V-SNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFY--HA  202 (343)
Q Consensus       127 ~~~~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~-~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~~~~--~~  202 (343)
                       .+ +....+.++++.+.++.++++.|++++|... . ++.+...+..... ++..+..   +..+.+.++.+...  ..
T Consensus       303 -~l-~~~~~~~l~~~~~~~~~kv~l~~~~~~w~~~~~~~g~~~~~~~~~~~-~~~~s~~---~~~~~~~l~~~~~~g~~~  376 (489)
T 2jae_A          303 -NL-PGDVLTALKAAKPSSSGKLGIEYSRRWWETEDRIYGGASNTDKDISQ-IMFPYDH---YNSDRGVVVAYYSSGKRQ  376 (489)
T ss_dssp             -CC-CHHHHHHHHTEECCCEEEEEEEESSCHHHHTTCCCSCEEEESSTTCE-EECCSSS---TTSSCEEEEEEEEETHHH
T ss_pred             -CC-CHHHHHHHHhCCCccceEEEEEeCCCCccCCCCcccccccCCCCceE-EEeCCCC---CCCCCCEEEEEeeCCchh
Confidence             22 2345567788889999999999999875322 1 1011111111111 2221211   11123333322222  12


Q ss_pred             CCCCCCCHHHHHHHHHHHHhhhccc-CCCCceeeeEEEecCCCcc------ccC------CCCCC-CCCCCCCCCCCeEE
Q 019274          203 NELMPLKDDQVVAKAVSYLSKCIKD-FSTATVMDHKIRRFPKSLT------HFF------PGSYK-YMMRGFTSFPNLFM  268 (343)
Q Consensus       203 ~~~~~~~~~e~~~~~~~~L~~~~p~-~~~~~~~~~~~~r~~~~~~------~~~------~g~~~-~~p~~~~~~~~L~l  268 (343)
                      ..|..++++++.+.+++.|++++|+ +.. ++....+.+|....+      .+.      |+... .++...++.+||||
T Consensus       377 ~~~~~~~~~~~~~~~l~~L~~~~~~~~~~-~~~~~~~~~W~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~f  455 (489)
T 2jae_A          377 EAFESLTHRQRLAKAIAEGSEIHGEKYTR-DISSSFSGSWRRTKYSESAWANWAGSGGSHGGAATPEYEKLLEPVDKIYF  455 (489)
T ss_dssp             HHHHTSCHHHHHHHHHHHHHHHHCGGGGS-SEEEEEEEEGGGSTTTSCSSCEETTC-------CCHHHHHHTSCBTTEEE
T ss_pred             hhhhcCCHHHHHHHHHHHHHHHcCcchhh-hccccEEEEcCCCCCCCCcchhcccccCCCcccchhhHHHHhCCCCcEEE
Confidence            3456678999999999999999997 554 566666777855421      111      33211 12223457899999


Q ss_pred             eeccccCCCCCccchHHHHHHHHHHHHHHHHhC
Q 019274          269 AGDWITTRHGSWSQERSYVTGLEAANRVVDYLG  301 (343)
Q Consensus       269 aGd~~~~g~~~~~~ega~~Sg~~aA~~il~~~~  301 (343)
                      ||+++.. ++ ++|+||+.||++||++|++.+.
T Consensus       456 aG~~~~~-~~-~~v~gAi~sg~~aA~~i~~~l~  486 (489)
T 2jae_A          456 AGDHLSN-AI-AWQHGALTSARDVVTHIHERVA  486 (489)
T ss_dssp             CSGGGBS-ST-TSHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEHHhcc-Cc-cHHHHHHHHHHHHHHHHHHHHh
Confidence            9999852 44 6999999999999999998754

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=99.79  E-value=5.9e-18  Score=170.62  Aligned_cols=228  Identities=18%  Similarity=0.195  Sum_probs=155.3

Q ss_pred             EeecCCCchhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-------CeEEecCEEEEeeChhhHHHhhh
Q 019274           53 VWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-------KETYSAGAVVLAVGISTLQELIK  125 (343)
Q Consensus        53 ~~~~gG~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-------g~~~~ad~VV~a~p~~~~~~Ll~  125 (343)
                      ..++||+ +.|+++|++     +.+|++|++|++|..++  +.| .|++.       +++++||+||+|+|+..+.+++.
T Consensus       565 ~~~~gG~-~~L~~aLa~-----~l~I~Lnt~V~~I~~~~--~gV-~V~~~~~~~~~~g~~i~AD~VIvTvPl~vLk~l~~  635 (852)
T 2xag_A          565 LTVRNGY-SCVPVALAE-----GLDIKLNTAVRQVRYTA--SGC-EVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPP  635 (852)
T ss_dssp             EEETTCT-THHHHHHTT-----TCCEECSEEEEEEEEET--TEE-EEEEEESSSTTCEEEEEESEEEECCCHHHHHCSSC
T ss_pred             EEecCcH-HHHHHHHHh-----CCCEEeCCeEEEEEEcC--CcE-EEEEeecccCCCCeEEECCEEEECCCHHHHHhhhc
Confidence            4567995 668888875     34799999999999987  444 45542       35799999999999999987422


Q ss_pred             ----hhcccCchhHHhhccCcccceEEEEEEeccCCCCCCCcceeecCC------CCccceEeeccccccccCCCCCeEE
Q 019274          126 ----NSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFG------DSLAWTFFDLNKIYDEHKDDSATVI  195 (343)
Q Consensus       126 ----~~~~~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~d~~~~~~~~~~~~~~~i  195 (343)
                          .+.++ ....+.++++.+.++.+++|.|++++|.. ... .+|+.      ......+++..         +..++
T Consensus       636 ~I~F~P~LP-~~k~~AI~~l~~g~v~KV~L~F~~~fW~~-~~~-~fG~l~~~~~~~~~l~~~~~~~---------~~pvL  703 (852)
T 2xag_A          636 AVQFVPPLP-EWKTSAVQRMGFGNLNKVVLCFDRVFWDP-SVN-LFGHVGSTTASRGELFLFWNLY---------KAPIL  703 (852)
T ss_dssp             SSEEESCCC-HHHHHHHHHSEECCCEEEEEECSSCCSCT-TCC-EEEECCSSSTTTTTTCEEEECS---------SSSEE
T ss_pred             ccccCCCCC-HHHHHHHHcCCccceEEEEEEcCCcccCC-CCC-eeeeeccccCCCCceEEEecCC---------CCCEE
Confidence                12232 33456788899999999999999998843 212 22211      01112234321         11243


Q ss_pred             EEEee--CCCCCCCCCHHHHHHHHHHHHhhhcccCCCCceeeeEEEecCCC------ccccCCCCCCC------CC----
Q 019274          196 QADFY--HANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKS------LTHFFPGSYKY------MM----  257 (343)
Q Consensus       196 ~~~~~--~~~~~~~~~~~e~~~~~~~~L~~~~p~~~~~~~~~~~~~r~~~~------~~~~~~g~~~~------~p----  257 (343)
                      .+.+.  .+..+..++++++.+.++++|+++|+.....+++...+.+|...      +..+.||....      .|    
T Consensus       704 l~~v~G~~a~~l~~lsdeel~~~~l~~L~~ifG~~~~~~P~~~~vtrW~~dp~s~GsYs~~~pG~~~~~~~~L~~P~~~~  783 (852)
T 2xag_A          704 LALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPG  783 (852)
T ss_dssp             EEEECHHHHHHGGGSCHHHHHHHHHHHHHHHHCTTTCCCCSEEEECCTTTCTTTSSSCEECBTTCCTTHHHHTTSCBCCC
T ss_pred             EEEecCcCHHHHhcCCHHHHHHHHHHHHHHHhCccccCCceEEEEEecCCCCCcCccccccCCCcchhhHHHHhCccccc
Confidence            33222  23345678899999999999999998643225677778889653      22234554211      11    


Q ss_pred             ----CCCCCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHHHhCC
Q 019274          258 ----RGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGD  302 (343)
Q Consensus       258 ----~~~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~~~~~  302 (343)
                          ....+.++|||||+++...++ ++|+||+.||.+||++|+..+..
T Consensus       784 ~~~p~~~~~~grL~FAGE~Ts~~~~-gtveGAi~SG~RAA~~Il~~l~~  831 (852)
T 2xag_A          784 PSIPGAPQPIPRLFFAGEHTIRNYP-ATVHGALLSGLREAGRIADQFLG  831 (852)
T ss_dssp             CSSTTCCCCCCCEEECSGGGCTTST-TSHHHHHHHHHHHHHHHHHHHHC
T ss_pred             cccccccCCCCcEEEEehhHhCCCC-cCHHHHHHHHHHHHHHHHHHhhC
Confidence                123456899999999987677 79999999999999999998864

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=99.78  E-value=3.7e-18  Score=169.29  Aligned_cols=227  Identities=19%  Similarity=0.211  Sum_probs=152.4

Q ss_pred             EeecCCCchhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-------CeEEecCEEEEeeChhhHHHhh-
Q 019274           53 VWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-------KETYSAGAVVLAVGISTLQELI-  124 (343)
Q Consensus        53 ~~~~gG~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-------g~~~~ad~VV~a~p~~~~~~Ll-  124 (343)
                      ..++||+ +.|+++|++     +.+|++|++|++|..++  +.| .|++.       +++++||+||+|+|+..+.++. 
T Consensus       394 ~~~~gG~-~~l~~~La~-----~l~I~l~~~V~~I~~~~--~~v-~V~~~~~~~~~~~~~~~Ad~VI~tvP~~vL~~l~~  464 (662)
T 2z3y_A          394 LTVRNGY-SCVPVALAE-----GLDIKLNTAVRQVRYTA--SGC-EVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPP  464 (662)
T ss_dssp             EEETTCT-THHHHHHTT-----TCEEETTEEEEEEEEET--TEE-EEEEEESSCTTCEEEEEESEEEECCCHHHHHCSSC
T ss_pred             eeecCcH-HHHHHHHHh-----cCceecCCeEEEEEECC--CcE-EEEEeecccCCCCeEEEeCEEEECCCHHHHhcccC
Confidence            4567995 678888875     45899999999999987  444 45542       3579999999999999998742 


Q ss_pred             ---hhhcccCchhHHhhccCcccceEEEEEEeccCCCCCCCcceeecC-CC---Cc--cceEeeccccccccCCCCCeEE
Q 019274          125 ---KNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGF-GD---SL--AWTFFDLNKIYDEHKDDSATVI  195 (343)
Q Consensus       125 ---~~~~~~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~-~~---~~--~~~~~d~~~~~~~~~~~~~~~i  195 (343)
                         -.+.++ ....++++++.+.++.++++.|++++|.. ... .++. ..   ..  ...+++.+         +..++
T Consensus       465 ~i~f~P~LP-~~k~~Ai~~l~~g~~~KV~l~f~~~fW~~-~~~-~~G~l~~~~~~~~~~~~~~~~~---------~~~vL  532 (662)
T 2z3y_A          465 AVQFVPPLP-EWKTSAVQRMGFGNLNKVVLCFDRVFWDP-SVN-LFGHVGSTTASRGELFLFWNLY---------KAPIL  532 (662)
T ss_dssp             SSEEESCCC-HHHHHHHHHSEECCCEEEEEECSSCCSCT-TCS-EEEECCSSSTTTTEEEEEECCS---------SSSEE
T ss_pred             ceEEcCCCC-HHHHHHHHhCCccceeEEEEEcCcccccC-CCC-ceeeecCCCCCCCceeEEEeCC---------CCCEE
Confidence               112232 33457788999999999999999999843 212 2221 11   11  11122211         12344


Q ss_pred             EEEee--CCCCCCCCCHHHHHHHHHHHHhhhcccCCCCceeeeEEEecCCC------ccccCCCCCCC------CC----
Q 019274          196 QADFY--HANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKS------LTHFFPGSYKY------MM----  257 (343)
Q Consensus       196 ~~~~~--~~~~~~~~~~~e~~~~~~~~L~~~~p~~~~~~~~~~~~~r~~~~------~~~~~~g~~~~------~p----  257 (343)
                      ...+.  .+..+..++++++.+.++++|+++|+.....+++...+.+|...      +..+.||....      .|    
T Consensus       533 ~~~~~G~~a~~~~~lsdee~~~~~l~~L~~~~g~~~~~~p~~~~v~~W~~dp~~~Gsys~~~pg~~~~~~~~l~~p~~~~  612 (662)
T 2z3y_A          533 LALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPG  612 (662)
T ss_dssp             EEEECTHHHHHHTTSCHHHHHHHHHHHHHHHHCTTSSCCCSEEEECCTTTCTTTSSSCEECBTTCCTHHHHHHHCCBCC-
T ss_pred             EEEeccHhHHHHHhCCHHHHHHHHHHHHHHHhCCcccCCCceeEEEEECCCCCCCcccccCCCCCchhhHHHHhCcCccc
Confidence            33222  22345678999999999999999998643225667778889654      22234453210      11    


Q ss_pred             ----CCCCCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHHHhC
Q 019274          258 ----RGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG  301 (343)
Q Consensus       258 ----~~~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~~~~  301 (343)
                          ....+.++|||||+++...++ ++|+||+.||++||++|++.++
T Consensus       613 ~~~~~~~~~~grl~FAGe~ts~~~~-g~v~GAi~SG~raA~~i~~~~~  659 (662)
T 2z3y_A          613 PSIPGAPQPIPRLFFAGEHTIRNYP-ATVHGALLSGLREAGRIADQFL  659 (662)
T ss_dssp             --------CCCCEEECSGGGCTTST-TSHHHHHHHHHHHHHHHHHHHT
T ss_pred             cccccccCCCCcEEEEeccccCCCC-cCHHHHHHHHHHHHHHHHHHcc
Confidence                122356899999999987677 7999999999999999998765

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=99.77  E-value=7.5e-18  Score=161.93  Aligned_cols=234  Identities=13%  Similarity=0.064  Sum_probs=152.7

Q ss_pred             eEeecCCCchhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-Ce----EEecCEEEEeeChhhHHHhhhh
Q 019274           52 LVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KE----TYSAGAVVLAVGISTLQELIKN  126 (343)
Q Consensus        52 ~~~~~gG~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~----~~~ad~VV~a~p~~~~~~Ll~~  126 (343)
                      +..++||+ +.|+++|++.+.+   +|++|++|++|..++  ++| .|++. ++    +++||+||+|+|+..+.++.-.
T Consensus       233 ~~~~~gG~-~~l~~~l~~~l~~---~i~~~~~V~~I~~~~--~~v-~v~~~~~~~~~~~~~ad~vI~t~p~~~~~~i~f~  305 (498)
T 2iid_A          233 FDEIVDGM-DKLPTAMYRDIQD---KVHFNAQVIKIQQND--QKV-TVVYETLSKETPSVTADYVIVCTTSRAVRLIKFN  305 (498)
T ss_dssp             EEEETTCT-THHHHHHHHHTGG---GEESSCEEEEEEECS--SCE-EEEEECSSSCCCEEEESEEEECSCHHHHTTSEEE
T ss_pred             eEEeCCcH-HHHHHHHHHhccc---ccccCCEEEEEEECC--CeE-EEEEecCCcccceEEeCEEEECCChHHHhheecC
Confidence            45678995 6799999988753   899999999999887  554 46553 33    4799999999999987766433


Q ss_pred             hcccCchhHHhhccCcccceEEEEEEeccCCCCCCCc-ceeecCCCCccceEeeccccccccCCCCCeEEEEEee--CCC
Q 019274          127 SILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVS-NACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFY--HAN  203 (343)
Q Consensus       127 ~~~~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~~~~--~~~  203 (343)
                      +.++ ....+.++++.+.+..++++.|++++|..... ......+....+.+++ +..   .+ ++..++.....  .+.
T Consensus       306 p~Lp-~~~~~ai~~l~~~~~~kv~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~-s~~---~p-~g~~~L~~~~~g~~a~  379 (498)
T 2iid_A          306 PPLL-PKKAHALRSVHYRSGTKIFLTCTTKFWEDDGIHGGKSTTDLPSRFIYYP-NHN---FT-NGVGVIIAYGIGDDAN  379 (498)
T ss_dssp             SCCC-HHHHHHHHHCCEECEEEEEEEESSCGGGGGTCCSSEEEESSTTCEEECC-SSC---CT-TSCEEEEEEEEHHHHH
T ss_pred             CCCC-HHHHHHHHhCCCcceeEEEEEeCCCCccCCCccCCcccCCCCcceEEEC-CCC---CC-CCCcEEEEEeCCccHh
Confidence            3342 34567788899999999999999998743210 0110011111122222 111   11 23445443222  234


Q ss_pred             CCCCCCHHHHHHHHHHHHhhhcccCCC---CceeeeEEEecCCCccccCCCCCC---------CCCCCCCCCCCeEEeec
Q 019274          204 ELMPLKDDQVVAKAVSYLSKCIKDFST---ATVMDHKIRRFPKSLTHFFPGSYK---------YMMRGFTSFPNLFMAGD  271 (343)
Q Consensus       204 ~~~~~~~~e~~~~~~~~L~~~~p~~~~---~~~~~~~~~r~~~~~~~~~~g~~~---------~~p~~~~~~~~L~laGd  271 (343)
                      .+..++++++.+.++++|+++++...+   .......+.+|...  .|..|++.         ..+....+.+||||||+
T Consensus       380 ~~~~~~~~~~~~~~l~~L~~~~g~~~~~~~~~~~~~~~~~W~~~--p~~~G~~~~~~~~~~~~~~~~l~~p~~~l~fAGe  457 (498)
T 2iid_A          380 FFQALDFKDCADIVFNDLSLIHQLPKKDIQSFCYPSVIQKWSLD--KYAMGGITTFTPYQFQHFSDPLTASQGRIYFAGE  457 (498)
T ss_dssp             TTTTSCHHHHHHHHHHHHHHHHTCCHHHHHHHEEEEEEEEGGGC--TTTCSSEECCCTTHHHHHHHHHHCCBTTEEECSG
T ss_pred             hhhcCCHHHHHHHHHHHHHHHcCCChhhhhhhcCccEEEecCCC--CCCCceeeecCCcchHHHHHHHhCCCCcEEEEEc
Confidence            566788999999999999999973211   01123456678542  22333321         11222356889999999


Q ss_pred             cccCCCCCccchHHHHHHHHHHHHHHHHhCC
Q 019274          272 WITTRHGSWSQERSYVTGLEAANRVVDYLGD  302 (343)
Q Consensus       272 ~~~~g~~~~~~ega~~Sg~~aA~~il~~~~~  302 (343)
                      ++...+  ++|+||+.||++||++|++.++.
T Consensus       458 ~t~~~~--g~~~GAi~SG~raA~~i~~~l~~  486 (498)
T 2iid_A          458 YTAQAH--GWIDSTIKSGLRAARDVNLASEN  486 (498)
T ss_dssp             GGSSSS--SCHHHHHHHHHHHHHHHHHHHHC
T ss_pred             ccccCC--cCHHHHHHHHHHHHHHHHHHhcC
Confidence            986444  58999999999999999998864

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=99.76  E-value=8.3e-17  Score=151.73  Aligned_cols=258  Identities=12%  Similarity=0.080  Sum_probs=167.3

Q ss_pred             HHHHHhHHHHHHhhhcCCcccccHHHHHHHHHHHH------HhcCCCceeEeecCCCchhhhHHHHHHHHHcCCeEEcce
Q 019274            9 RLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFII------LAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGR   82 (343)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~------~~~~~~~~~~~~~gG~~~~l~~~l~~~l~~~G~~i~~~~   82 (343)
                      +....++.+++...++.+++++|+..++.++....      +..   ... .+.+|+ ..+++.++   ++.| +|++|+
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~g~-~~l~~~~~---~~~g-~i~~~~  224 (431)
T 3k7m_X          154 PVSRQFLLAWAWNMLGQPADQASALWMLQLVAAHHYSILGVVLS---LDE-VFSNGS-ADLVDAMS---QEIP-EIRLQT  224 (431)
T ss_dssp             HHHHHHHHHHHHHHHSSCTTTSBHHHHHHHHHHTTSCHHHHHHT---CCE-EETTCT-HHHHHHHH---TTCS-CEESSC
T ss_pred             HHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHhcCCccceeecc---hhh-hcCCcH-HHHHHHHH---hhCC-ceEeCC
Confidence            34455778889999999999999998877665320      011   111 457885 45666654   3446 999999


Q ss_pred             eeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhHHHhhhhhcccCchhHHhhccCcccceEEEEEEeccCCCCCC
Q 019274           83 RVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPN  161 (343)
Q Consensus        83 ~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~~~Ll~~~~~~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~  161 (343)
                      +|++|..++  ++| .|++. |++++||+||+|+|+..+.++.-.+.++ ....+.+..+.+...+++.+.++++++   
T Consensus       225 ~V~~i~~~~--~~v-~v~~~~g~~~~ad~vi~a~~~~~l~~i~~~p~l~-~~~~~~~~~~~~~~~~kv~~~~~~~~~---  297 (431)
T 3k7m_X          225 VVTGIDQSG--DVV-NVTVKDGHAFQAHSVIVATPMNTWRRIVFTPALP-ERRRSVIEEGHGGQGLKILIHVRGAEA---  297 (431)
T ss_dssp             CEEEEECSS--SSE-EEEETTSCCEEEEEEEECSCGGGGGGSEEESCCC-HHHHHHHHHCCCCCEEEEEEEEESCCT---
T ss_pred             EEEEEEEcC--CeE-EEEECCCCEEEeCEEEEecCcchHhheeeCCCCC-HHHHHHHHhCCCcceEEEEEEECCCCc---
Confidence            999999877  444 47776 5679999999999999988764333332 334466666777778899999998763   


Q ss_pred             CcceeecCCCCccceEeeccccccccCCCCCeEEEEEeeCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCceeeeEEEec
Q 019274          162 VSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRF  241 (343)
Q Consensus       162 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~L~~~~p~~~~~~~~~~~~~r~  241 (343)
                        + +++.+......+++....    . .++.++ +.+.....+...+.    +.+.+.|++++|+.   .++.....+|
T Consensus       298 --~-i~~~~d~~~~~~~~~~~~----~-~~~~~l-~~~~~g~~~~~~~~----~~~~~~l~~~~~~~---~~~~~~~~~W  361 (431)
T 3k7m_X          298 --G-IECVGDGIFPTLYDYCEV----S-ESERLL-VAFTDSGSFDPTDI----GAVKDAVLYYLPEV---EVLGIDYHDW  361 (431)
T ss_dssp             --T-EEEEBSSSSSEEEEEEEC----S-SSEEEE-EEEEETTTCCTTCH----HHHHHHHHHHCTTC---EEEEEECCCT
T ss_pred             --C-ceEcCCCCEEEEEeCcCC----C-CCCeEE-EEEeccccCCCCCH----HHHHHHHHHhcCCC---CccEeEeccc
Confidence              1 222222222223443321    0 123333 33333333333332    34667888889875   3555555678


Q ss_pred             CC------CccccCCCCC-CCCCCCCCCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHHH
Q 019274          242 PK------SLTHFFPGSY-KYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDY  299 (343)
Q Consensus       242 ~~------~~~~~~~g~~-~~~p~~~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~~  299 (343)
                      ..      ++..+.||.. ..++....|.++|||||..+...++ ++|+||+.||++||++|+..
T Consensus       362 ~~d~~~~G~~~~~~~g~~~~~~~~l~~p~g~~~fAGe~t~~~~~-g~~~GA~~sg~raa~~i~~~  425 (431)
T 3k7m_X          362 IADPLFEGPWVAPRVGQFSRVHKELGEPAGRIHFVGSDVSLEFP-GYIEGALETAECAVNAILHS  425 (431)
T ss_dssp             TTCTTTSSSSCCCCTTTTTTSSGGGGSCBTTEEECSGGGCSSST-TSHHHHHHHHHHHHHHHHHC
T ss_pred             CCCCCCCCCCCCcCCCCCcccHHHHhCCCCcEEEEehhhhccCC-eEehHHHHHHHHHHHHHHhh
Confidence            43      2223445653 3345555688999999998887777 79999999999999999874

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=99.71  E-value=7.6e-17  Score=161.50  Aligned_cols=229  Identities=17%  Similarity=0.176  Sum_probs=148.4

Q ss_pred             EeecCCCchhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhHHHh-h-hhhcc
Q 019274           53 VWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQEL-I-KNSIL  129 (343)
Q Consensus        53 ~~~~gG~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~~~L-l-~~~~~  129 (343)
                      ....+|+ +.++++|++     |++|+++++|++|..++  ++| .|++. |++++||+||+|+|+..+.+. + -.+.+
T Consensus       527 ~~~~~G~-~~l~~aLa~-----gl~I~l~t~V~~I~~~~--~~v-~V~~~~G~~i~Ad~VIvA~P~~vL~~~~i~f~P~L  597 (776)
T 4gut_A          527 TLLTPGY-SVIIEKLAE-----GLDIQLKSPVQCIDYSG--DEV-QVTTTDGTGYSAQKVLVTVPLALLQKGAIQFNPPL  597 (776)
T ss_dssp             EECTTCT-HHHHHHHHT-----TSCEESSCCEEEEECSS--SSE-EEEETTCCEEEESEEEECCCHHHHHTTCSEEESCC
T ss_pred             EEECChH-HHHHHHHHh-----CCcEEcCCeeEEEEEcC--CEE-EEEECCCcEEEcCEEEECCCHHHHhhcccccCCCC
Confidence            3456774 557766653     77999999999999887  444 47765 668999999999999998752 1 11223


Q ss_pred             cCchhHHhhccCcccceEEEEEEeccCCCCCC-CcceeecCCC------CccceEeeccccccccCCCCCeEEEEEeeC-
Q 019274          130 CNREEFLKVLNLASIDVVSVKLWFDKKVTVPN-VSNACSGFGD------SLAWTFFDLNKIYDEHKDDSATVIQADFYH-  201 (343)
Q Consensus       130 ~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~-~~~~~~~~~~------~~~~~~~d~~~~~~~~~~~~~~~i~~~~~~-  201 (343)
                      + ....+.+.++.+.++.++.+.|++++|... ....+++...      .....+++.+   +   ..+..++...+.. 
T Consensus       598 p-~~~~~ai~~l~~g~~~KV~l~f~~~FW~~~~~g~~~fG~l~~~~~~~~~~~~~~d~~---p---~g~~~vL~~~i~G~  670 (776)
T 4gut_A          598 S-EKKMKAINSLGAGIIEKIALQFPYRFWDSKVQGADFFGHVPPSASKRGLFAVFYDMD---P---QKKHSVLMSVIAGE  670 (776)
T ss_dssp             C-HHHHHHHHHEEEECCEEEEEECSSCTTHHHHTTCSEEEECCSSGGGTTEEEEEEESC---T---TSCSCEEEEEECTH
T ss_pred             C-HHHHHHHHhCCCeeEEEEEEecCcccccccCCCCceEEeecCCcCCCceEEEEecCC---C---CCCceEEEEEecch
Confidence            2 344577788888889999999999988431 0111222211      0111123321   1   0122344333322 


Q ss_pred             -CCCCCCCCHHHHHHHHHHHHhhhcccCCCCceeeeEEEecCCCcc------ccCCCCCC-CCCCCCCC-CCCeEEeecc
Q 019274          202 -ANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLT------HFFPGSYK-YMMRGFTS-FPNLFMAGDW  272 (343)
Q Consensus       202 -~~~~~~~~~~e~~~~~~~~L~~~~p~~~~~~~~~~~~~r~~~~~~------~~~~g~~~-~~p~~~~~-~~~L~laGd~  272 (343)
                       +..+..++++++.+.++++|+++||.....+++...+.+|....+      .+.||... ..+....+ .++|||||++
T Consensus       671 ~a~~l~~lsdeel~~~~l~~L~~ifg~~~~~~P~~~~vt~W~~dp~s~Gsys~~~~g~~~~~~~~L~~p~~grL~FAGE~  750 (776)
T 4gut_A          671 AVASVRTLDDKQVLQQCMATLRELFKEQEVPDPTKYFVTRWSTDPWIQMAYSFVKTGGSGEAYDIIAEDIQGTVFFAGEA  750 (776)
T ss_dssp             HHHHHHTSCHHHHHHHHHHHHHHHTTTSCCCCCSEEEECCGGGCTTTCCSEEEEBTTCCTHHHHHHHCCBTTTEEECSGG
T ss_pred             hHHHHHcCCHHHHHHHHHHHHHHHhCcccccCcceEEEecCCCCCccCCCCCccCCCCchhHHHHHhCcCCCcEEEEehh
Confidence             234567899999999999999999864322566667778854321      12233221 11111224 3789999999


Q ss_pred             ccCCCCCccchHHHHHHHHHHHHHHH
Q 019274          273 ITTRHGSWSQERSYVTGLEAANRVVD  298 (343)
Q Consensus       273 ~~~g~~~~~~ega~~Sg~~aA~~il~  298 (343)
                      ++..++ ++|+||+.||.+||++|++
T Consensus       751 Ts~~~~-gtveGAi~SG~RaA~~Ila  775 (776)
T 4gut_A          751 TNRHFP-QTVTGAYLSGVREASKIAA  775 (776)
T ss_dssp             GCSSSC-SSHHHHHHHHHHHHHHHHC
T ss_pred             hcCCCC-cCHHHHHHHHHHHHHHHHh
Confidence            997788 6999999999999999975

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=99.66  E-value=2.5e-15  Score=145.07  Aligned_cols=240  Identities=13%  Similarity=0.123  Sum_probs=140.4

Q ss_pred             EeecCCCchhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhHHHh--------
Q 019274           53 VWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQEL--------  123 (343)
Q Consensus        53 ~~~~gG~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~~~L--------  123 (343)
                      .+++|  .+.|+++|++.+.  +++|++|++|++|..+++ +. +.|++. |++++||+||+|+|+..+...        
T Consensus       196 ~~~~g--~~~l~~~l~~~l~--~~~i~~~~~V~~I~~~~~-~~-v~v~~~~g~~~~ad~VI~t~p~~~l~~~~~~~~~~~  269 (516)
T 1rsg_A          196 AFALN--YDSVVQRIAQSFP--QNWLKLSCEVKSITREPS-KN-VTVNCEDGTVYNADYVIITVPQSVLNLSVQPEKNLR  269 (516)
T ss_dssp             EEESC--HHHHHHHHHTTSC--GGGEETTCCEEEEEECTT-SC-EEEEETTSCEEEEEEEEECCCHHHHHGGGSSCSCST
T ss_pred             hhhhC--HHHHHHHHHHhCC--CCEEEECCEEEEEEEcCC-Ce-EEEEECCCcEEECCEEEECCCHHHhhhccccccccc
Confidence            35565  4678898887764  368999999999998642 33 467776 568999999999999998643        


Q ss_pred             --hh-hhcccCchhHHhhccCcccceEEEEEEeccCCCCCCCcceeecCCCCcc--ceEeecc-----------------
Q 019274          124 --IK-NSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLA--WTFFDLN-----------------  181 (343)
Q Consensus       124 --l~-~~~~~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~d~~-----------------  181 (343)
                        +. .+.+ +....+.++++.+.++.++++.|++++|..... .+.+......  ...++.+                 
T Consensus       270 ~~i~f~P~L-p~~~~~ai~~~~~~~~~Kv~l~f~~~fW~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (516)
T 1rsg_A          270 GRIEFQPPL-KPVIQDAFDKIHFGALGKVIFEFEECCWSNESS-KIVTLANSTNEFVEIVRNAENLDELDSMLEREDSQK  347 (516)
T ss_dssp             TCCEEESCC-CHHHHHHTTSSCCCCCEEEEEEESSCCSCCSCS-EEEECCCCCHHHHHHHHHCCSHHHHHHHC-------
T ss_pred             cceEecCCC-CHHHHHHHHhCCCCcceEEEEEeCCCCCCCCCC-cEEEeCCCCccchhhcccCcccchhhhccccccccc
Confidence              11 1123 234567888999999999999999999854322 2221111000  0000000                 


Q ss_pred             ----c--cccc-----cCCCCCeEEEEEeeCC---CCCCCC--CHHHHHHH---HHHHHhhhcc------cCCCC-----
Q 019274          182 ----K--IYDE-----HKDDSATVIQADFYHA---NELMPL--KDDQVVAK---AVSYLSKCIK------DFSTA-----  231 (343)
Q Consensus       182 ----~--~~~~-----~~~~~~~~i~~~~~~~---~~~~~~--~~~e~~~~---~~~~L~~~~p------~~~~~-----  231 (343)
                          .  ..+.     +...+..++.. +..+   ..+..+  +++++.+.   +++.+.++|+      ++...     
T Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~L~~-~~~g~~a~~~~~l~~~~~~~~~~~~~~l~~l~~~~g~~~~~~~~~~~~~~~~  426 (516)
T 1rsg_A          348 HTSVTCWSQPLFFVNLSKSTGVASFMM-LMQAPLTNHIESIREDKERLFSFFQPVLNKIMKCLDSEDVIDGMRPIENIAN  426 (516)
T ss_dssp             --CCCTTSSCEEEEEHHHHTSCSEEEE-EECBTHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTTCCCCEECCC-------
T ss_pred             ccccccccCceeEEEeeecCCCcEEEE-EecchHHHHHHhcCCCHHHHHHHHHHHHHHHHhhccccccccCCCCcccccc
Confidence                0  0000     00012334332 3222   123344  67777654   5555555553      33210     


Q ss_pred             --cee--eeEEEecCCCc------cccCCCCCCC--CCCC-CCCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHH
Q 019274          232 --TVM--DHKIRRFPKSL------THFFPGSYKY--MMRG-FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD  298 (343)
Q Consensus       232 --~~~--~~~~~r~~~~~------~~~~~g~~~~--~p~~-~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~  298 (343)
                        .++  ...+++|...-      ..+.||....  .... ..+.++|||||++|...++ ++|+||+.||.+||++|++
T Consensus       427 a~~p~~~~~~~~~W~~dp~~~Gsys~~~~g~~~~~~~~~l~~~~~~rl~FAGe~ts~~~~-g~v~GA~~SG~raA~~i~~  505 (516)
T 1rsg_A          427 ANKPVLRNIIVSNWTRDPYSRGAYSACFPGDDPVDMVVAMSNGQDSRIRFAGEHTIMDGA-GCAYGAWESGRREATRISD  505 (516)
T ss_dssp             CCSCEEEEEEECCTTTCTTTTTCCCCCBC----CHHHHHHHHCSSSSEEECSTTSCSTTB-TSHHHHHHHHHHHHHHHHH
T ss_pred             cCCCccceEEEecCCCCCCCCccCCCcCCCCCHHHHHHHhccCCCCcEEEeccccccCCC-ccchhHHHHHHHHHHHHHH
Confidence              122  45556774321      1223443210  0111 1356789999999987677 7999999999999999998


Q ss_pred             HhCC
Q 019274          299 YLGD  302 (343)
Q Consensus       299 ~~~~  302 (343)
                      .+..
T Consensus       506 ~~~~  509 (516)
T 1rsg_A          506 LLKL  509 (516)
T ss_dssp             HHHG
T ss_pred             Hhhh
Confidence            7763

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=99.63  E-value=9.3e-16  Score=144.24  Aligned_cols=259  Identities=12%  Similarity=0.137  Sum_probs=149.7

Q ss_pred             HHHHHhHHHHHHhhhcCCcccccHHHHHHHHHHH-HHhcCCCceeEeecCCCchhhhHHHHHHHHHcCCeEEcceeeeEE
Q 019274            9 RLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFI-ILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDF   87 (343)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~-~~~~~~~~~~~~~~gG~~~~l~~~l~~~l~~~G~~i~~~~~V~~I   87 (343)
                      ++.+.++.|++...++ +++++|+.+++.++... ++....+. ...+.||+ +.++++|.+.+   +.+|++|++|++|
T Consensus       156 ~~~~~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~g~-~~l~~~l~~~l---~~~v~~~~~V~~i  229 (424)
T 2b9w_A          156 AARDLWINPFTAFGYG-HFDNVPAAYVLKYLDFVTMMSFAKGD-LWTWADGT-QAMFEHLNATL---EHPAERNVDITRI  229 (424)
T ss_dssp             GGHHHHTTTTCCCCCC-CTTTSBHHHHHHHSCHHHHHHHHHTC-CBCCTTCH-HHHHHHHHHHS---SSCCBCSCCEEEE
T ss_pred             HHHHHHHHHHHhhccC-ChHhcCHHHHHHhhhHhhhhcccCCc-eEEeCChH-HHHHHHHHHhh---cceEEcCCEEEEE
Confidence            4666677788776664 67889988775443321 11100111 12457884 67999988766   5689999999999


Q ss_pred             EecCCCCeEEEEEECCeEEecCEEEEeeChhhHHHhhhhhcccCchhHHhhccCcccceEEEEEEeccCCCCCCCcceee
Q 019274           88 IYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACS  167 (343)
Q Consensus        88 ~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~~~~Ll~~~~~~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~~~~~~  167 (343)
                      ..++  +++. |++++++++||+||+|+|++.+.++++..    +...+.+.++.+.++. +.+.+....+  . ...++
T Consensus       230 ~~~~--~~v~-v~~~~g~~~ad~Vv~a~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~--~-~~~~~  298 (424)
T 2b9w_A          230 TRED--GKVH-IHTTDWDRESDVLVLTVPLEKFLDYSDAD----DDEREYFSKIIHQQYM-VDACLVKEYP--T-ISGYV  298 (424)
T ss_dssp             ECCT--TCEE-EEESSCEEEESEEEECSCHHHHTTSBCCC----HHHHHHHTTCEEEEEE-EEEEEESSCC--S-SEEEC
T ss_pred             EEEC--CEEE-EEECCCeEEcCEEEECCCHHHHhhccCCC----HHHHHHHhcCCcceeE-EEEEEeccCC--c-ccccc
Confidence            9877  5554 77775568999999999999887665431    2233344566665533 2223333322  1 11222


Q ss_pred             cCC--C-CccceEeeccccccccCCCCCeEEEEE-eeCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCceeeeEEEecCC
Q 019274          168 GFG--D-SLAWTFFDLNKIYDEHKDDSATVIQAD-FYHANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPK  243 (343)
Q Consensus       168 ~~~--~-~~~~~~~d~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~e~~~~~~~~L~~~~p~~~~~~~~~~~~~r~~~  243 (343)
                      +..  . ..++.+++....    ++.+..++.+. ......+...+++++.+.++++|.++.+...  +++..  ..|..
T Consensus       299 ~~~~~~~~~g~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~~l~~l~~~~~--~~~~~--~~w~~  370 (424)
T 2b9w_A          299 PDNMRPERLGHVMVYYHRW----ADDPHQIITTYLLRNHPDYADKTQEECRQMVLDDMETFGHPVE--KIIEE--QTWYY  370 (424)
T ss_dssp             GGGGSGGGTTSCCEEEECC----TTCTTSCEEEEEECCBTTBCCCCHHHHHHHHHHHHHHTTCCEE--EEEEE--EEEEE
T ss_pred             cCCCCCcCCCcceEEeeec----CCCCceEEEEEeccCCCcccccChHHHHHHHHHHHHHcCCccc--ccccc--cceee
Confidence            211  0 112223332222    11122333222 2223345567789999999999999654332  22221  22321


Q ss_pred             ----CccccCCCCCCCCCCCCCCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHH
Q 019274          244 ----SLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVV  297 (343)
Q Consensus       244 ----~~~~~~~g~~~~~p~~~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il  297 (343)
                          +...+..|+.. +.....+.+||||||+|+.  +  +.+|+|+.||..||+.|+
T Consensus       371 ~p~~~~~~~~~G~~~-~~~~~~~~~~l~~aG~~~~--~--g~~e~a~~Sg~~aA~~~l  423 (424)
T 2b9w_A          371 FPHVSSEDYKAGWYE-KVEGMQGRRNTFYAGEIMS--F--GNFDEVCHYSKDLVTRFF  423 (424)
T ss_dssp             EEECCHHHHHTTHHH-HHHHTTTGGGEEECSGGGS--C--SSHHHHHHHHHHHHHHHT
T ss_pred             eeccCHHHHhccHHH-HHHHHhCCCCceEeccccc--c--ccHHHHHHHHHHHHHHhc
Confidence                11223333221 1111235689999999974  3  478999999999999885

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=99.61  E-value=6e-15  Score=145.22  Aligned_cols=270  Identities=11%  Similarity=0.036  Sum_probs=159.9

Q ss_pred             ccccHHHHHHHHHHHHHhcCCCceeEeecCCCchhhhHHHHHHHHHcCCeEEcceeee--EEEecCCCC------eEEEE
Q 019274           28 EQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVT--DFIYDEERC------CISDV   99 (343)
Q Consensus        28 ~~~sa~~~~~~l~~~~~~~~~~~~~~~~~gG~~~~l~~~l~~~l~~~G~~i~~~~~V~--~I~~~~~~g------~v~~V   99 (343)
                      ...|...++...   . .. ...+...+.|| ++.|+++|++.+.. |+.|+++++|+  +|..+++ +      .| .|
T Consensus       320 ~~~S~le~L~~~---~-~~-~~~~~~~i~GG-~~~L~~aLa~~l~~-g~~I~l~~~V~~~~I~~~~~-g~~~~~~~V-~V  390 (721)
T 3ayj_A          320 YNISLVEMMRLI---L-WD-YSNEYTLPVTE-NVEFIRNLFLKAQN-VGAGKLVVQVRQERVANACH-SGTASARAQ-LL  390 (721)
T ss_dssp             TTBBHHHHHHHH---H-TT-TTCEECCSSSS-THHHHHHHHHHHHH-HTTTSEEEEEECEEEEEEEE-CSSSSCCEE-EE
T ss_pred             cchhHHHHHHHH---h-cC-CccceeEECCc-HHHHHHHHHHhccc-CCceEeCCEEEeeeEEECCC-CCccccceE-EE
Confidence            456665544443   1 21 23345567899 57899999998753 67899999999  9998753 3      23 35


Q ss_pred             -EEC-Ce--EEecCEEEEeeChhhHHHhh-----h----------------------hhc-ccC-------chhHHhhcc
Q 019274          100 -VCG-KE--TYSAGAVVLAVGISTLQELI-----K----------------------NSI-LCN-------REEFLKVLN  140 (343)
Q Consensus       100 -~~~-g~--~~~ad~VV~a~p~~~~~~Ll-----~----------------------~~~-~~~-------~~~~~~~~~  140 (343)
                       .+. |+  +++||+||+|+|+..+..++     .                      .+. +-+       ....+++++
T Consensus       391 ~~~~~G~~~~~~aD~VIvTvP~~~L~~~~~r~~i~~~~~~~~~~~~~~~~~~~~~~~~pplLlp~~~~~~~~~~~~Ai~~  470 (721)
T 3ayj_A          391 SYDSHNAVHSEAYDFVILAVPHDQLTPIVSRSGFEHAASQNLGDAGLGLETHTYNQVYPPLLLSDSSPAANARIVTAIGQ  470 (721)
T ss_dssp             EEETTCCEEEEEESEEEECSCHHHHHHHHSSSCSSCEEEEEESCGGGTCCCEEEEEEBCSSCCCSSCHHHHHHHHHHHHT
T ss_pred             EEecCCceEEEEcCEEEECCCHHHHhhccccccccccccccccccccccccccccccCCcccCCcccccccHHHHHHHHh
Confidence             333 55  78999999999999985411     1                      111 101       234577889


Q ss_pred             CcccceEEEEEEe-----ccCCCCCCCccee--ec-CCCCccce-EeeccccccccCCCCCeEEEEEeeC---CCCC---
Q 019274          141 LASIDVVSVKLWF-----DKKVTVPNVSNAC--SG-FGDSLAWT-FFDLNKIYDEHKDDSATVIQADFYH---ANEL---  205 (343)
Q Consensus       141 l~~~~~~~v~l~~-----~~~~~~~~~~~~~--~~-~~~~~~~~-~~d~~~~~~~~~~~~~~~i~~~~~~---~~~~---  205 (343)
                      +.+.+..++.+.+     ++++|... .+..  .. .+...... ++...+. ..+..++..++.+.|..   +..+   
T Consensus       471 l~~~~s~Kv~l~~~~~~~~~~fW~~~-~g~~i~~s~TD~~~r~~~~~p~p~~-~d~~~~~~gvlL~sYtwg~dA~~~~~~  548 (721)
T 3ayj_A          471 LHMARSSKVFATVKTAALDQPWVPQW-RGEPIKAVVSDSGLAASYVVPSPIV-EDGQAPEYSSLLASYTWEDDSTRLRHD  548 (721)
T ss_dssp             CCEECEEEEEEEEEGGGGGSTTSCEE-TTEECCEEEETTTTEEEEEEECSCC-----CCSEEEEEEEEEETHHHHHHHTT
T ss_pred             cCcccceEEEEEEccccCCCCccccc-CCCCceeeecCCCcceEEEeccCcc-cccCCCCCcEEEEEEeCccchhhhhcc
Confidence            9999999999999     88887432 1111  11 11111111 1110000 01111233444333321   1123   


Q ss_pred             ---CCCCHH-------HHHHHHHHHHh--hhcccCC-----------C-CceeeeEEEecCC--Cc---cccCCCCC---
Q 019274          206 ---MPLKDD-------QVVAKAVSYLS--KCIKDFS-----------T-ATVMDHKIRRFPK--SL---THFFPGSY---  253 (343)
Q Consensus       206 ---~~~~~~-------e~~~~~~~~L~--~~~p~~~-----------~-~~~~~~~~~r~~~--~~---~~~~~g~~---  253 (343)
                         ..++++       ++.+.++++|.  +++|+..           . ....+.....|..  +.   ..+.||..   
T Consensus       549 ~g~~~~~~~er~~~~~~~~~~~l~~la~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~dW~~dps~Gaf~~~~pgq~~~~  628 (721)
T 3ayj_A          549 FGLYPQNPATETGTADGMYRTMVNRAYRYVKYAGASNAQPWWFYQLLAEARTADRFVFDWTTNKTAGGFKLDMTGDHHQS  628 (721)
T ss_dssp             CCSSSEESSSSSCCCHHHHHHHHHHTCCEECCTTCSSCEECHHHHHHHTSCSTTCEEEEGGGSTTSSSEECCBTTTHHHH
T ss_pred             ccccCCChHHhhhhhhHHHHHHHHHHhhhccCccccccccchhhhhhhhcccCceEEEeCCCCCCCCccccCCCccchhh
Confidence               223333       44999999999  8898754           1 0112334566732  22   12345541   


Q ss_pred             ----CCC--CCCCCCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHHHhCCCCcccccc
Q 019274          254 ----KYM--MRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGDGSFSKIIP  310 (343)
Q Consensus       254 ----~~~--p~~~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~~~~~~~~~~~~~  310 (343)
                          .+.  .....+..++||||+++. .++ +.+|||+.||.+||..|...++.+...|+.+
T Consensus       629 ~l~~~~~~~~~~~~~~gri~fAGe~~S-~~~-GWieGAl~Sa~~Aa~~i~~~~~~~~~~~~~~  689 (721)
T 3ayj_A          629 NLCFRYHTHALAASLDNRFFIASDSYS-HLG-GWLEGAFMSALNAVAGLIVRANRGDVSALST  689 (721)
T ss_dssp             HHHHHGGGGGGCTTTCCCEEECSGGGS-SCT-TSHHHHHHHHHHHHHHHHHHHTTTCGGGBCT
T ss_pred             hhhhhhhhhccccCCCCCEEEeehhhc-cCC-ceehHHHHHHHHHHHHHHHHhcCCCCcccCc
Confidence                111  111234578999999997 566 6899999999999999999999877666554

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=99.26  E-value=6.6e-10  Score=105.26  Aligned_cols=66  Identities=11%  Similarity=0.083  Sum_probs=59.3

Q ss_pred             ceeEeecCCCchhhhHHHHHHHHHcCCeEEcceeeeEEEec--CCCCeEEEEEECCeEEecCEEEEeeChh
Q 019274           50 FDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYD--EERCCISDVVCGKETYSAGAVVLAVGIS  118 (343)
Q Consensus        50 ~~~~~~~gG~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~--~~~g~v~~V~~~g~~~~ad~VV~a~p~~  118 (343)
                      ..+.+|+||+ +.|+++|++.+++.|++|+++++|++|..+  +  +++++|+++|++++||+||+|++++
T Consensus       232 ~~~~~p~gG~-~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~--~~~~~V~~~g~~~~ad~VV~a~~~~  299 (453)
T 2bcg_G          232 SPYLYPMYGL-GELPQGFARLSAIYGGTYMLDTPIDEVLYKKDT--GKFEGVKTKLGTFKAPLVIADPTYF  299 (453)
T ss_dssp             CSEEEETTCT-THHHHHHHHHHHHTTCEEECSCCCCEEEEETTT--TEEEEEEETTEEEECSCEEECGGGC
T ss_pred             CceEeeCCCH-HHHHHHHHHHHHHcCCEEECCCEEEEEEEECCC--CeEEEEEECCeEEECCEEEECCCcc
Confidence            3466899996 579999999999999999999999999988  6  7888899888899999999999986

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=99.15  E-value=7.1e-09  Score=97.57  Aligned_cols=91  Identities=10%  Similarity=0.042  Sum_probs=69.5

Q ss_pred             CcccccHHHHHHHHHHHHH--hcCCCceeEeecCCCchhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECC
Q 019274           26 PAEQCSAAATLGILYFIIL--AHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGK  103 (343)
Q Consensus        26 ~~~~~sa~~~~~~l~~~~~--~~~~~~~~~~~~gG~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g  103 (343)
                      ++.+.++...+..+..+..  .......+.+|+||+ +.|+++|++.+++.|++|+++++|++|..++  +++++|+++|
T Consensus       198 ~~~~~p~~~~~~~~~~~~~s~~~~g~~~~~~p~gG~-~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~--~~v~~v~~~g  274 (433)
T 1d5t_A          198 DYLDQPCLETINRIKLYSESLARYGKSPYLYPLYGL-GELPQGFARLSAIYGGTYMLNKPVDDIIMEN--GKVVGVKSEG  274 (433)
T ss_dssp             GGGGSBSHHHHHHHHHHHHSCCSSSCCSEEEETTCT-THHHHHHHHHHHHHTCCCBCSCCCCEEEEET--TEEEEEEETT
T ss_pred             CccCCCHHHHHHHHHHHHHHHHhcCCCcEEEeCcCH-HHHHHHHHHHHHHcCCEEECCCEEEEEEEeC--CEEEEEEECC
Confidence            4556666544443333321  111223467899995 6799999999999999999999999999887  7888888888


Q ss_pred             eEEecCEEEEeeChhh
Q 019274          104 ETYSAGAVVLAVGIST  119 (343)
Q Consensus       104 ~~~~ad~VV~a~p~~~  119 (343)
                      ++++||+||+|++++.
T Consensus       275 ~~~~ad~VV~a~~~~~  290 (433)
T 1d5t_A          275 EVARCKQLICDPSYVP  290 (433)
T ss_dssp             EEEECSEEEECGGGCG
T ss_pred             eEEECCEEEECCCCCc
Confidence            8999999999999874

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=99.12  E-value=2.3e-11  Score=112.16  Aligned_cols=121  Identities=12%  Similarity=0.026  Sum_probs=85.6

Q ss_pred             CCCHHHHHHhHHHHHHhhhcCCcccccHHHHHHHHHHHHHhcCC-Ccee-EeecCCCchhhhHHHHHHHHHcCCeEEcce
Q 019274            5 GCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQK-NFDL-VWCRGTLREKIFEPWMDSMRTRGCEFLDGR   82 (343)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~~~~~-~~~~-~~~~gG~~~~l~~~l~~~l~~~G~~i~~~~   82 (343)
                      +++++++++++.|++.++|+.+++++|+..+..+.......+.. ...+ ++|+|| ++.|+++|++     |++|++|+
T Consensus       138 ~~g~~~~~~~~~p~~~~~~~~~~~~lsa~~~~~l~~~~~~~~~~~~~~~~~~p~gG-~~~l~~~l~~-----g~~i~l~~  211 (367)
T 1i8t_A          138 LVGEDLYQALIKGYTEKQWGRSAKELPAFIIKRIPVRFTFDNNYFSDRYQGIPVGG-YTKLIEKMLE-----GVDVKLGI  211 (367)
T ss_dssp             HHHHHHHHHHTHHHHHHHHSSCGGGSCTTSSCCCCBCSSSCCCSCCCSEEECBTTC-HHHHHHHHHT-----TSEEECSC
T ss_pred             HHhHHHHHHHHHHHHhhhhCCChHHcCHHHHhhceeeeccccccccchhhcccCCC-HHHHHHHHhc-----CCEEEeCC
Confidence            37889999999999999999999999987542110000000100 1123 489999 4678888876     68999999


Q ss_pred             eeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhhHHHhhhhhcccCchhHHhhccCcccceEEEEEEeccCC
Q 019274           83 RVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKV  157 (343)
Q Consensus        83 ~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~~~~Ll~~~~~~~~~~~~~~~~l~~~~~~~v~l~~~~~~  157 (343)
                      +|++|.  .  . +        ...||+||+|+|++.+.++             .+.+++|.+...+.+.++++.
T Consensus       212 ~V~~i~--~--~-v--------~~~~D~VV~a~p~~~~~~~-------------~l~~l~y~s~~~v~~~~d~~~  260 (367)
T 1i8t_A          212 DFLKDK--D--S-L--------ASKAHRIIYTGPIDQYFDY-------------RFGALEYRSLKFETERHEFPN  260 (367)
T ss_dssp             CGGGSH--H--H-H--------HTTEEEEEECSCHHHHTTT-------------TTCCCCEEEEEEEEEEESSSC
T ss_pred             ceeeec--h--h-h--------hccCCEEEEeccHHHHHHH-------------hhCCCCCceEEEEEEEecccc
Confidence            999884  2  2 2        2469999999999876532             134577888888888888764

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=99.10  E-value=5.9e-11  Score=110.01  Aligned_cols=116  Identities=7%  Similarity=-0.060  Sum_probs=83.2

Q ss_pred             CCCHHHHHHhHHHHHHhhhcCCcccccHHHHHHHHHHHHHhcC-CCcee-EeecCCCchhhhHHHHHHHHHcCCeEEcce
Q 019274            5 GCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQ-KNFDL-VWCRGTLREKIFEPWMDSMRTRGCEFLDGR   82 (343)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~~~~-~~~~~-~~~~gG~~~~l~~~l~~~l~~~G~~i~~~~   82 (343)
                      .++++++++++.|++.++|+.+++++|+..+..+...+...+. ....+ .+|+|| ++.|+++|++   +.|++|++|+
T Consensus       142 ~~g~~~~~~~~~p~~~~~~~~~~~~ls~~~~~r~~~~~~~~~~~~~~~~~~~p~gG-~~~l~~~l~~---~~g~~I~l~~  217 (384)
T 2bi7_A          142 FIGKELYEAFFKGYTIKQWGMQPSELPASILKRLPVRFNYDDNYFNHKFQGMPKCG-YTQMIKSILN---HENIKVDLQR  217 (384)
T ss_dssp             HHCHHHHHHHTHHHHHHHHSSCGGGSBGGGCCSCCCCSSSCCCSCCCSEEEEETTH-HHHHHHHHHC---STTEEEEESC
T ss_pred             hhcHHHHHHHHHHHHHHHhCCCHHHhCHHHHhccccccccccccccccccEEECcC-HHHHHHHHHh---cCCCEEEECC
Confidence            3789999999999999999999999998764211000000110 01123 389999 5679998876   3588999999


Q ss_pred             eee-EEEecCCCCeEEEEEECCeEEecCEEEEeeChhhHHHhhhhhcccCchhHHhhccCcccceEEEEEEec
Q 019274           83 RVT-DFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFD  154 (343)
Q Consensus        83 ~V~-~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~~~~Ll~~~~~~~~~~~~~~~~l~~~~~~~v~l~~~  154 (343)
                      +|+ +|..                 +||+||+|+|++.+.+++             +.++.|.+...+.+.++
T Consensus       218 ~V~~~i~~-----------------~~d~VI~a~p~~~~~~~~-------------lg~l~y~s~~~v~~~~d  260 (384)
T 2bi7_A          218 EFIVEERT-----------------HYDHVFYSGPLDAFYGYQ-------------YGRLGYRTLDFKKFTYQ  260 (384)
T ss_dssp             CCCGGGGG-----------------GSSEEEECSCHHHHTTTT-------------TCCCCEEEEEEEEEEEE
T ss_pred             eeehhhhc-----------------cCCEEEEcCCHHHHHHhh-------------cCCCCcceEEEEEEEeC
Confidence            998 7631                 299999999999876541             23467888777777777

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=99.08  E-value=4e-12  Score=118.55  Aligned_cols=123  Identities=8%  Similarity=-0.111  Sum_probs=87.4

Q ss_pred             CCCHHHHHHhHHHHHHhhhcCCcccccHHHHHHHHHHHHHhcCC-Ccee-EeecCCCchhhhHHHHHHHHHcCCeEEcce
Q 019274            5 GCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQK-NFDL-VWCRGTLREKIFEPWMDSMRTRGCEFLDGR   82 (343)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~~~~~-~~~~-~~~~gG~~~~l~~~l~~~l~~~G~~i~~~~   82 (343)
                      ++++++++.++.|++.++|+.+++++|+.++..+...+...+.. ...+ .+|+|| ++.|+++|++   +.|++|++|+
T Consensus       148 ~~g~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~p~gG-~~~l~~~l~~---~~g~~I~l~~  223 (399)
T 1v0j_A          148 LIGRPLYEAFVKGYTAKQWQTDPKELPAANITRLPVRYTFDNRYFSDTYEGLPTDG-YTAWLQNMAA---DHRIEVRLNT  223 (399)
T ss_dssp             HHCHHHHHHHTHHHHHHHHTSCGGGSCGGGCSCCCCCSSSCCCSCCCSEEECBTTH-HHHHHHHHTC---STTEEEECSC
T ss_pred             HHhHHHHHHHHHHHHHhhcCCChhhcChHhhhcceeEeccccchhhhhhccccccc-HHHHHHHHHh---cCCeEEEECC
Confidence            57899999999999999999999999987652111000001110 1123 388999 4679998876   4588999999


Q ss_pred             eeeEEEecCCCCeEEEEEECCeEE-ecCEEEEeeChhhHHHhhhhhcccCchhHHhhccCcccceEEEEEEeccC
Q 019274           83 RVTDFIYDEERCCISDVVCGKETY-SAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKK  156 (343)
Q Consensus        83 ~V~~I~~~~~~g~v~~V~~~g~~~-~ad~VV~a~p~~~~~~Ll~~~~~~~~~~~~~~~~l~~~~~~~v~l~~~~~  156 (343)
                      +|++|..    . |     .  ++ +||+||+|+|++.+.++             .+.++.|.++..+.+.++.+
T Consensus       224 ~V~~I~~----~-v-----~--~~~~aD~VI~t~p~~~l~~~-------------~l~~l~y~s~~~~~~~~~~~  273 (399)
T 1v0j_A          224 DWFDVRG----Q-L-----R--PGSPAAPVVYTGPLDRYFDY-------------AEGRLGWRTLDFEVEVLPIG  273 (399)
T ss_dssp             CHHHHHH----H-H-----T--TTSTTCCEEECSCHHHHTTT-------------TTCCCCEEEEEEEEEEESSS
T ss_pred             chhhhhh----h-h-----h--hcccCCEEEECCcHHHHHhh-------------hhCCCCcceEEEEEEEEccc
Confidence            9999852    2 2     1  34 69999999999987654             12456788777788888764

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=99.03  E-value=6.2e-10  Score=105.16  Aligned_cols=113  Identities=13%  Similarity=0.092  Sum_probs=82.9

Q ss_pred             ccCCCCHHHHHHhHHHHHHhhhcCCcccccHHHHHHHHHHHH--HhcCCCceeEeecCCCchhhhHHHHHHHHHcCCeEE
Q 019274            2 IQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFII--LAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFL   79 (343)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~--~~~~~~~~~~~~~gG~~~~l~~~l~~~l~~~G~~i~   79 (343)
                      +++++++++.+.++.+++... ..+..+.++...+..+..+.  +...+.+.+.||+||+ ..|+++|++.+++.|++|+
T Consensus       197 ~~~gls~~l~~fl~~alaL~~-~~~~~~~~a~~~l~ri~~y~~Sl~~yg~s~~~yp~gG~-~~L~~aL~r~~~~~Gg~i~  274 (475)
T 3p1w_A          197 KHFNLCQLTIDFLGHAVALYL-NDDYLKQPAYLTLERIKLYMQSISAFGKSPFIYPLYGL-GGIPEGFSRMCAINGGTFM  274 (475)
T ss_dssp             HHTTCCHHHHHHHHHHTSCCS-SSGGGGSBHHHHHHHHHHHHHHHHHHSSCSEEEETTCT-THHHHHHHHHHHHC--CEE
T ss_pred             HHcCCCHHHHHHHHHHHHhhc-CCCcccCCHHHHHHHHHHHHHHHhhcCCCceEEECCCH-HHHHHHHHHHHHHcCCEEE
Confidence            567888888876555543322 12344567777766555443  2223456788999996 5699999999999999999


Q ss_pred             cceeeeEEEe-cCCCCeEEEEEEC-CeEEecCEEEEeeChh
Q 019274           80 DGRRVTDFIY-DEERCCISDVVCG-KETYSAGAVVLAVGIS  118 (343)
Q Consensus        80 ~~~~V~~I~~-~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~  118 (343)
                      ++++|++|.. ++  |++++|++. |++++||+||+|++..
T Consensus       275 l~t~V~~I~~d~~--g~v~gV~~~~G~~i~Ad~VI~a~~~~  313 (475)
T 3p1w_A          275 LNKNVVDFVFDDD--NKVCGIKSSDGEIAYCDKVICDPSYV  313 (475)
T ss_dssp             SSCCEEEEEECTT--SCEEEEEETTSCEEEEEEEEECGGGC
T ss_pred             eCCeEEEEEEecC--CeEEEEEECCCcEEECCEEEECCCcc
Confidence            9999999998 55  788999997 5789999999999764

>2e1m_C L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=98.80  E-value=1.5e-09  Score=89.50  Aligned_cols=97  Identities=12%  Similarity=0.116  Sum_probs=70.0

Q ss_pred             CCCCCCCCHHHHHHHHHHHHhhhc-ccCCCCceeee--EEEecCCCcc------ccCCCCCC-CCCCCCCCCCCeEEeec
Q 019274          202 ANELMPLKDDQVVAKAVSYLSKCI-KDFSTATVMDH--KIRRFPKSLT------HFFPGSYK-YMMRGFTSFPNLFMAGD  271 (343)
Q Consensus       202 ~~~~~~~~~~e~~~~~~~~L~~~~-p~~~~~~~~~~--~~~r~~~~~~------~~~~g~~~-~~p~~~~~~~~L~laGd  271 (343)
                      +..+..++++++++.++++|.++| |+. . .+...  .+++|...-+      .+.||... +.+....+.++|||||+
T Consensus        48 A~~~~~l~~~e~~~~~l~~L~~~~g~~~-~-~~~~~~~~~~~W~~dp~~~Ga~s~~~pg~~~~~~~~l~~p~grl~FAGe  125 (181)
T 2e1m_C           48 AARWDSFDDAERYGYALENLQSVHGRRI-E-VFYTGAGQTQSWLRDPYACGEAAVYTPHQMTAFHLDVVRPEGPVYFAGE  125 (181)
T ss_dssp             HHHHTTSCTTTTHHHHHHHHHHHHCGGG-G-GTEEEEEEEEESSSCTTTSSSEECCCTTHHHHHHHHHHSCBTTEEECSG
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHhCCCc-H-hhccCcceecccCCCCCCCCcccCcCCCchHHHHHHHhCCCCcEEEEEH
Confidence            344667788999999999999999 665 3 44445  6677854322      12344321 12233356789999999


Q ss_pred             cccCCCCCccchHHHHHHHHHHHHHHHHhCC
Q 019274          272 WITTRHGSWSQERSYVTGLEAANRVVDYLGD  302 (343)
Q Consensus       272 ~~~~g~~~~~~ega~~Sg~~aA~~il~~~~~  302 (343)
                      ++.. ++ ++|+||+.||++||++|+..++.
T Consensus       126 ~ts~-~~-g~~eGAl~SG~raA~~i~~~l~~  154 (181)
T 2e1m_C          126 HVSL-KH-AWIEGAVETAVRAAIAVNEAPVG  154 (181)
T ss_dssp             GGTT-ST-TSHHHHHHHHHHHHHHHHTCCC-
T ss_pred             HHcC-Cc-cCHHHHHHHHHHHHHHHHHHhcc
Confidence            9985 77 69999999999999999998764

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=98.66  E-value=2.1e-07  Score=90.65  Aligned_cols=138  Identities=9%  Similarity=0.007  Sum_probs=87.7

Q ss_pred             CccCCCCHHHHHHhHHHHHHhhhcCCcccccHHHHHHHHHHHH--HhcCCCceeEeecCCCchhhhHHHHHHHHHcCCeE
Q 019274            1 MIQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFII--LAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEF   78 (343)
Q Consensus         1 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~--~~~~~~~~~~~~~gG~~~~l~~~l~~~l~~~G~~i   78 (343)
                      |++.++++++.+.+...+  ++...  +..++...+..+..++  ++..+...+.||+||+ ..|+++|.+.++..||+|
T Consensus       321 L~~~~ls~~L~~~L~~~l--al~~~--~~~pa~~~l~~i~~~l~sl~~yg~sg~~yp~GG~-g~L~qaL~r~~~~~Gg~i  395 (650)
T 1vg0_A          321 LKTQKLTPNLQYFVLHSI--AMTSE--TTSCTVDGLKATKKFLQCLGRYGNTPFLFPLYGQ-GELPQCFCRMCAVFGGIY  395 (650)
T ss_dssp             HTTSSSCHHHHHHHHHHT--TC--C--CSCBHHHHHHHHHHHHHHTTSSSSSSEEEETTCT-THHHHHHHHHHHHTTCEE
T ss_pred             HHHhCCCHHHHHHHHHHH--hccCC--CCCchhHHHHHHHHHHHHHHhhccCceEEeCCch-hHHHHHHHHHHHHcCCEE
Confidence            356667777666554322  23222  2235555443333332  1222334678999996 569999999999999999


Q ss_pred             EcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhHHHhhhhhcccCchhHHhhccCcccceEEEEEEeccCC
Q 019274           79 LDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKV  157 (343)
Q Consensus        79 ~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~~~Ll~~~~~~~~~~~~~~~~l~~~~~~~v~l~~~~~~  157 (343)
                      +++++|++|..++++|++++|++. |++++||+||++..  .    ++...         ..++.+..+..+.+.+++++
T Consensus       396 ~l~~~V~~I~~~~~~g~v~gV~~~~Ge~i~A~~VVs~~~--~----lp~~~---------~~~~~~~~v~R~i~i~~~pi  460 (650)
T 1vg0_A          396 CLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDS--Y----LSENT---------CSRVQYRQISRAVLITDGSV  460 (650)
T ss_dssp             ESSCCEEEEEEETTTCCEEEEEETTSCEEECSEEEEEGG--G----BCTTT---------TTTCCCEEEEEEEEEESSCS
T ss_pred             EeCCEeeEEEEeCCCCeEEEEEeCCCCEEEcCEEEEChh--h----cCHhH---------hccccccceEEEEEEecCCC
Confidence            999999999987633578888865 78999999999332  1    11110         11223445666777788765


Q ss_pred             C
Q 019274          158 T  158 (343)
Q Consensus       158 ~  158 (343)
                      .
T Consensus       461 ~  461 (650)
T 1vg0_A          461 L  461 (650)
T ss_dssp             S
T ss_pred             C
Confidence            4

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=98.55  E-value=5.7e-08  Score=89.90  Aligned_cols=122  Identities=6%  Similarity=-0.035  Sum_probs=85.5

Q ss_pred             CCCCHHHHHHhHHHHHHhhhcCCcccccHHHHHHHHHHHHHhcCC--Ccee-EeecCCCchhhhHHHHHHHHHcCCeEEc
Q 019274            4 FGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQK--NFDL-VWCRGTLREKIFEPWMDSMRTRGCEFLD   80 (343)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~~~~~--~~~~-~~~~gG~~~~l~~~l~~~l~~~G~~i~~   80 (343)
                      +++|++++++|++|++.++|+.+++++|+.++.. +.........  ...+ ++|+||. ..|+++|++   +.|++|++
T Consensus       165 ~~~G~~~~e~~~~py~~k~~~~~~~~Lsa~~~~R-vp~~~~~d~~yf~~~~qg~P~gGy-~~l~e~l~~---~~g~~V~l  239 (397)
T 3hdq_A          165 SKVGRDLYNKFFRGYTRKQWGLDPSELDASVTAR-VPTRTNRDNRYFADTYQAMPLHGY-TRMFQNMLS---SPNIKVML  239 (397)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHSSCGGGSBTTTGGG-SCCCSSCCCBSCCCSEEEEETTCH-HHHHHHHTC---STTEEEEE
T ss_pred             HhcCHHHHHHHHHHHhCchhCCCHHHHHHHHHHh-cCcccccCccchhhhheeccCCCH-HHHHHHHHh---ccCCEEEE
Confidence            4678999999999999999999999999875421 1100000000  1123 4799994 678888754   56999999


Q ss_pred             ceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhhHHHhhhhhcccCchhHHhhccCcccceEEEEEEeccCCC
Q 019274           81 GRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVT  158 (343)
Q Consensus        81 ~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~~~~Ll~~~~~~~~~~~~~~~~l~~~~~~~v~l~~~~~~~  158 (343)
                      |++|+++   +  .          ++.+|+||+|+|++.+...             ...+|.|.+...+.+.++....
T Consensus       240 ~~~v~~~---~--~----------~~~~d~vI~T~P~d~~~~~-------------~~g~L~yrsl~~~~~~~~~~~~  289 (397)
T 3hdq_A          240 NTDYREI---A--D----------FIPFQHMIYTGPVDAFFDF-------------CYGKLPYRSLEFRHETHDTEQL  289 (397)
T ss_dssp             SCCGGGT---T--T----------TSCEEEEEECSCHHHHTTT-------------TTCCCCEEEEEEEEEEESSSCS
T ss_pred             CCeEEec---c--c----------cccCCEEEEcCCHHHHHHH-------------hcCCCCCceEEEEEEEeccccC
Confidence            9999843   1  1          3358999999998766311             1346788888888888886543

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=98.52  E-value=3.4e-06  Score=79.13  Aligned_cols=58  Identities=19%  Similarity=0.324  Sum_probs=51.6

Q ss_pred             hhhhHHHHHHHHHcCCeEEcce---eeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhH
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGR---RVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTL  120 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~---~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~  120 (343)
                      ..++++|.+.+++.|++|++++   +|++|..++  +++++|++. |++++||.||+|+++++.
T Consensus       161 ~~~~~~L~~~a~~~Gv~i~~~t~~~~V~~i~~~~--~~v~gV~t~~G~~i~Ad~VV~AtG~~s~  222 (438)
T 3dje_A          161 RNALVAAAREAQRMGVKFVTGTPQGRVVTLIFEN--NDVKGAVTADGKIWRAERTFLCAGASAG  222 (438)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESTTTTCEEEEEEET--TEEEEEEETTTEEEECSEEEECCGGGGG
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCcCceEEEEEecC--CeEEEEEECCCCEEECCEEEECCCCChh
Confidence            4588999999999999999999   999999887  788889987 558999999999999864

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=98.46  E-value=2.5e-05  Score=71.63  Aligned_cols=206  Identities=10%  Similarity=0.070  Sum_probs=111.3

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhhHHHhhhhhcccCchhHHhhcc
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLN  140 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~~~~Ll~~~~~~~~~~~~~~~~  140 (343)
                      ..++++|.+.+++.|++|+.+++|++|..++  +++.+|++.+++++||.||+|++.+... |.+.....        ..
T Consensus       149 ~~l~~~l~~~~~~~Gv~i~~~~~v~~i~~~~--~~v~gv~~~~g~i~a~~VV~A~G~~s~~-l~~~~g~~--------~~  217 (382)
T 1y56_B          149 FEATTAFAVKAKEYGAKLLEYTEVKGFLIEN--NEIKGVKTNKGIIKTGIVVNATNAWANL-INAMAGIK--------TK  217 (382)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEESS--SBEEEEEETTEEEECSEEEECCGGGHHH-HHHHHTCC--------SC
T ss_pred             HHHHHHHHHHHHHCCCEEECCceEEEEEEEC--CEEEEEEECCcEEECCEEEECcchhHHH-HHHHcCCC--------cC
Confidence            4578889999999999999999999999887  6777788876689999999999998532 32211000        00


Q ss_pred             CcccceEEEEEEeccCCCCCCCcceeecCCCCccceEeeccccccccCCCCCeEEEEE-eeCCCCCCCCCHHHHHHHHHH
Q 019274          141 LASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQAD-FYHANELMPLKDDQVVAKAVS  219 (343)
Q Consensus       141 l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~e~~~~~~~  219 (343)
                      +...+.-...+.++...... ....++..+.  ...++-     + .  +++-++... ......+....+++..+.+++
T Consensus       218 ~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~--~~~y~~-----p-~--~~g~~iG~~~~~~~~~~~~~~~~~~~~~l~~  286 (382)
T 1y56_B          218 IPIEPYKHQAVITQPIKRGT-INPMVISFKY--GHAYLT-----Q-T--FHGGIIGGIGYEIGPTYDLTPTYEFLREVSY  286 (382)
T ss_dssp             CCCEEEEEEEEEECCCSTTS-SCSEEEESTT--TTEEEE-----C-C--SSSCCEEECSCCBSSCCCCCCCHHHHHHHHH
T ss_pred             cCCCeeEeEEEEEccCCccc-CCCeEEecCC--CeEEEE-----E-e--CCeEEEecCCCCCCCCCCCCCCHHHHHHHHH
Confidence            11112212222233211100 0011211110  011111     1 0  123222211 111111222345677888999


Q ss_pred             HHhhhcccCCCCceeeeEEEecCCCccccCCCCCCCCCCCCCCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHHH
Q 019274          220 YLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDY  299 (343)
Q Consensus       220 ~L~~~~p~~~~~~~~~~~~~r~~~~~~~~~~g~~~~~p~~~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~~  299 (343)
                      .+.++||.+.+.+++..    |.. ....+++..... ......+|+|++..+.  |   .++.-|..+|+.+|+.|.+.
T Consensus       287 ~~~~~~p~l~~~~~~~~----~~g-~r~~t~d~~p~i-g~~~~~~~~~~~~G~~--g---~G~~~a~~~g~~la~~i~~~  355 (382)
T 1y56_B          287 YFTKIIPALKNLLILRT----WAG-YYAKTPDSNPAI-GRIEELNDYYIAAGFS--G---HGFMMAPAVGEMVAELITKG  355 (382)
T ss_dssp             HHHHHCGGGGGSEEEEE----EEE-EEEECTTSCCEE-EEESSSBTEEEEECCT--T---CHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHhCCCcCCCCceEE----EEe-ccccCCCCCcEe-ccCCCCCCEEEEEecC--c---chHhhhHHHHHHHHHHHhCC
Confidence            99999998865344332    211 112233322110 0012367999886542  3   35667889999999999864

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=98.43  E-value=7.3e-06  Score=75.21  Aligned_cols=196  Identities=12%  Similarity=0.034  Sum_probs=109.9

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhhHHHhhhhhcccCchhHHhhcc
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLN  140 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~~~~Ll~~~~~~~~~~~~~~~~  140 (343)
                      ..+.+.|.+.+++.|++|+++++|++|..++  +++ .|++++++++||.||+|++.+.. .+++....          .
T Consensus       164 ~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~--~~~-~v~~~~g~~~a~~vV~A~G~~s~-~l~~~~~~----------~  229 (382)
T 1ryi_A          164 YFVCKAYVKAAKMLGAEIFEHTPVLHVERDG--EAL-FIKTPSGDVWANHVVVASGVWSG-MFFKQLGL----------N  229 (382)
T ss_dssp             HHHHHHHHHHHHHTTCEEETTCCCCEEECSS--SSE-EEEETTEEEEEEEEEECCGGGTH-HHHHHTTC----------C
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCcEEEEEEEC--CEE-EEEcCCceEEcCEEEECCChhHH-HHHHhcCC----------C
Confidence            4588999999999999999999999999877  555 78787668999999999999754 23332110          0


Q ss_pred             CcccceEEEEEEeccCCCCCCCcceeecCCCCccceEeeccccccccCCCCCeEEEEEeeCCCCCCCCCHHHHHHHHHHH
Q 019274          141 LASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSY  220 (343)
Q Consensus       141 l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~  220 (343)
                      +...+.-...+.++.+.... . ..++.   ...+ ++      +.   +++.++.........+....+++..+.+++.
T Consensus       230 ~~~~~~~g~~~~~~~~~~~~-~-~~~~~---~~~~-~~------p~---~~g~~~vG~~~~~~~~~~~~~~~~~~~l~~~  294 (382)
T 1ryi_A          230 NAFLPVKGECLSVWNDDIPL-T-KTLYH---DHCY-IV------PR---KSGRLVVGATMKPGDWSETPDLGGLESVMKK  294 (382)
T ss_dssp             CCCEEEEEEEEEEECCSSCC-C-SEEEE---TTEE-EE------EC---TTSEEEEECCCEETCCCCSCCHHHHHHHHHH
T ss_pred             CceeccceEEEEECCCCCCc-c-ceEEc---CCEE-EE------Ec---CCCeEEEeecccccCCCCCCCHHHHHHHHHH
Confidence            11122222333343321100 1 11111   0011 11      10   1233321111111122333456778899999


Q ss_pred             HhhhcccCCCCceeeeEEEecCCCccccCCCCCCCCCCCC--CCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHH
Q 019274          221 LSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGF--TSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD  298 (343)
Q Consensus       221 L~~~~p~~~~~~~~~~~~~r~~~~~~~~~~g~~~~~p~~~--~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~  298 (343)
                      +.+++|.+.+.++...    |.. ...++++..   |..-  ...+|+|+++.+.  |+   ++..|..+|+.+|+.|++
T Consensus       295 ~~~~~p~l~~~~~~~~----w~g-~~~~t~d~~---p~ig~~~~~~~l~~~~G~~--g~---G~~~a~~~g~~la~~i~~  361 (382)
T 1ryi_A          295 AKTMLPAIQNMKVDRF----WAG-LRPGTKDGK---PYIGRHPEDSRILFAAGHF--RN---GILLAPATGALISDLIMN  361 (382)
T ss_dssp             HHHHCGGGGGSEEEEE----EEE-EEEECSSSC---CEEEEETTEEEEEEEECCS--SC---TTTTHHHHHHHHHHHHTT
T ss_pred             HHHhCCCcCCCceeeE----EEE-ecccCCCCC---cEeccCCCcCCEEEEEcCC--cc---hHHHhHHHHHHHHHHHhC
Confidence            9999998865333322    211 112233321   2111  1357999987663  33   345589999999999864

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=98.42  E-value=3.3e-05  Score=70.59  Aligned_cols=57  Identities=16%  Similarity=0.253  Sum_probs=50.2

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhhH
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL  120 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~~  120 (343)
                      ..++++|.+.+++.|++|+++++|++|..++  ++ +.|++++++++||+||+|++++..
T Consensus       154 ~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~--~~-~~V~t~~g~i~a~~VV~A~G~~s~  210 (381)
T 3nyc_A          154 DALHQGYLRGIRRNQGQVLCNHEALEIRRVD--GA-WEVRCDAGSYRAAVLVNAAGAWCD  210 (381)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCCCCEEEEET--TE-EEEECSSEEEEESEEEECCGGGHH
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEEEEEeC--Ce-EEEEeCCCEEEcCEEEECCChhHH
Confidence            4688999999999999999999999999887  55 678887668999999999999864

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=98.41  E-value=1.1e-05  Score=73.49  Aligned_cols=206  Identities=10%  Similarity=-0.034  Sum_probs=107.5

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-C--eEEecCEEEEeeChhhHHHhhhhh-cccCchhHH
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-K--ETYSAGAVVLAVGISTLQELIKNS-ILCNREEFL  136 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g--~~~~ad~VV~a~p~~~~~~Ll~~~-~~~~~~~~~  136 (343)
                      ..++++|.+.+++.|++|+++++|++|..+++ + ++.|.++ |  .+++||.||+|++++.. +|++.. -++ ..   
T Consensus       150 ~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~-~-~~~v~~~~g~~~~~~a~~VV~A~G~~s~-~l~~~~~g~~-~~---  222 (369)
T 3dme_A          150 HALMLAYQGDAESDGAQLVFHTPLIAGRVRPE-G-GFELDFGGAEPMTLSCRVLINAAGLHAP-GLARRIEGIP-RD---  222 (369)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEECTT-S-SEEEEECTTSCEEEEEEEEEECCGGGHH-HHHHTEETSC-GG---
T ss_pred             HHHHHHHHHHHHHCCCEEECCCEEEEEEEcCC-c-eEEEEECCCceeEEEeCEEEECCCcchH-HHHHHhcCCC-cc---
Confidence            45889999999999999999999999998863 3 3457776 4  38999999999999853 243321 110 00   


Q ss_pred             hhccCcccceEEEEEEeccCCCCCCCcceeecCCC--CccceEeeccccccccCCCCCeE-EEEEeeCCCCCCCCCHHHH
Q 019274          137 KVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGD--SLAWTFFDLNKIYDEHKDDSATV-IQADFYHANELMPLKDDQV  213 (343)
Q Consensus       137 ~~~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~e~  213 (343)
                        ......+.-..++.++.+...  . ..++....  ..... +..    +    .++.+ +.........+....+++.
T Consensus       223 --~~~~i~p~rG~~~~~~~~~~~--~-~~~~~~p~~~~~~~~-~~~----~----~~g~~~iG~t~e~~~~~~~~~~~~~  288 (369)
T 3dme_A          223 --SIPPEYLCKGSYFTLAGRAPF--S-RLIYPVPQHAGLGVH-LTL----D----LGGQAKFGPDTEWIATEDYTLDPRR  288 (369)
T ss_dssp             --GSCCCEEEEEEEEECSSSCSC--S-SEEEECTTCSSCCCC-EEE----C----TTSCEEECCCCEEESSCCCCCCGGG
T ss_pred             --ccceeeecceEEEEECCCCcc--C-ceeecCCCCCCceEE-EeC----c----cCCcEEECCCcccccccccccCHHH
Confidence              001112222334445543211  1 11221110  00010 100    0    12222 2111111011222234556


Q ss_pred             HHHHHHHHhhhcccCCCCceeeeEEEecCCCcccc-CCCCCCCCCCC----CCCCCCeEEeeccccCCCCCccchHHHHH
Q 019274          214 VAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHF-FPGSYKYMMRG----FTSFPNLFMAGDWITTRHGSWSQERSYVT  288 (343)
Q Consensus       214 ~~~~~~~L~~~~p~~~~~~~~~~~~~r~~~~~~~~-~~g~~~~~p~~----~~~~~~L~laGd~~~~g~~~~~~ega~~S  288 (343)
                      .+.+++.+.+++|.+.+.+++..+.    .-.+.. .++.....|..    ....+|+|++..+     +..++..+...
T Consensus       289 ~~~l~~~~~~~~P~l~~~~v~~~w~----G~Rp~~~~~~~~d~~p~i~g~~~~~~~~l~~~~G~-----~~~G~t~ap~~  359 (369)
T 3dme_A          289 ADVFYAAVRSYWPALPDGALAPGYT----GIRPKISGPHEPAADFAIAGPASHGVAGLVNLYGI-----ESPGLTASLAI  359 (369)
T ss_dssp             GGGHHHHHHTTCTTCCTTCCEEEEE----EEEEESSCTTSCCCCCEEECHHHHCCTTEEEEECC-----CTTHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCChhhceecce----eccccccCCCCCcCCeEEecccccCCCCEEEEeCC-----CCchHhccHHH
Confidence            7788999999999987645544322    111110 01111122322    1246899988655     22355667788


Q ss_pred             HHHHHHHH
Q 019274          289 GLEAANRV  296 (343)
Q Consensus       289 g~~aA~~i  296 (343)
                      |+.+|+.|
T Consensus       360 a~~~a~~i  367 (369)
T 3dme_A          360 AEETLARL  367 (369)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            88888766

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=98.38  E-value=2.4e-05  Score=72.25  Aligned_cols=199  Identities=15%  Similarity=0.098  Sum_probs=109.0

Q ss_pred             hhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhhHHHhhhhhcccCchhHHhhccC
Q 019274           62 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNL  141 (343)
Q Consensus        62 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~~~~Ll~~~~~~~~~~~~~~~~l  141 (343)
                      .+++.|.+.+++.|++|+++++|++|..++  +++++|++++++++||.||+|++.+.-. +......          .+
T Consensus       175 ~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~--~~~~~v~~~~g~~~a~~vV~a~G~~s~~-l~~~~g~----------~~  241 (405)
T 2gag_B          175 HVAWAFARKANEMGVDIIQNCEVTGFIKDG--EKVTGVKTTRGTIHAGKVALAGAGHSSV-LAEMAGF----------EL  241 (405)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCEEEEEESS--SBEEEEEETTCCEEEEEEEECCGGGHHH-HHHHHTC----------CC
T ss_pred             HHHHHHHHHHHHCCCEEEcCCeEEEEEEeC--CEEEEEEeCCceEECCEEEECCchhHHH-HHHHcCC----------CC
Confidence            588899999999999999999999999877  6778888875589999999999987532 2221100          01


Q ss_pred             cccceEEEEEEeccCCCCCCCcceeecCCCCccceEeeccccccccCCCCCeEE-EEEeeCCCCCCCCCHHHHHHHHHHH
Q 019274          142 ASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVI-QADFYHANELMPLKDDQVVAKAVSY  220 (343)
Q Consensus       142 ~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~~~~e~~~~~~~~  220 (343)
                      ...+.....+.++ +.. +.....+...+   ...++.     +.   +++.++ ..............+++..+.+++.
T Consensus       242 ~~~~~~~~~~~~~-~~~-~~~~~~~~~~~---~~~y~~-----p~---~~g~~~ig~~~~~~~~~~~~~~~~~~~~l~~~  308 (405)
T 2gag_B          242 PIQSHPLQALVSE-LFE-PVHPTVVMSNH---IHVYVS-----QA---HKGELVMGAGIDSYNGYGQRGAFHVIQEQMAA  308 (405)
T ss_dssp             CEEEEEEEEEEEE-EBC-SCCCSEEEETT---TTEEEE-----EC---TTSEEEEEEEECSSCCCSSCCCTHHHHHHHHH
T ss_pred             CccccceeEEEec-CCc-cccCceEEeCC---CcEEEE-----Ec---CCCcEEEEeccCCCCccccCCCHHHHHHHHHH
Confidence            1111111112222 211 10011111111   011111     10   133333 2222111112222345677889999


Q ss_pred             HhhhcccCCCCceeeeEEEecCCCccccCCCCCCCCCCCC-CCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHHH
Q 019274          221 LSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGF-TSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDY  299 (343)
Q Consensus       221 L~~~~p~~~~~~~~~~~~~r~~~~~~~~~~g~~~~~p~~~-~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~~  299 (343)
                      +.+++|.+.+.++...+.    . ...++++..   |..- .+.+|+|++..+.  |+   ++..|...|+.+|+.|.+.
T Consensus       309 ~~~~~p~l~~~~~~~~w~----g-~~~~t~d~~---p~ig~~~~~~l~~~~G~~--g~---G~~~a~~~g~~la~~i~g~  375 (405)
T 2gag_B          309 AVELFPIFARAHVLRTWG----G-IVDTTMDAS---PIISKTPIQNLYVNCGWG--TG---GFKGTPGAGFTLAHTIAND  375 (405)
T ss_dssp             HHHHCGGGGGCEECEEEE----E-EEEEETTSC---CEEEECSSBTEEEEECCG--GG---CSTTHHHHHHHHHHHHHHT
T ss_pred             HHHhCCccccCCcceEEe----e-ccccCCCCC---CEecccCCCCEEEEecCC--Cc---hhhHHHHHHHHHHHHHhCC
Confidence            999999886434433221    1 112233322   2111 1267999886553  33   3445889999999999864

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=98.29  E-value=2.9e-05  Score=72.90  Aligned_cols=206  Identities=14%  Similarity=0.057  Sum_probs=109.7

Q ss_pred             hhhHHHHHHHHHcCCeEEcceeeeEEEe---------------cCCCCeEEEEEECCeEE--ecCEEEEeeChhhHHHhh
Q 019274           62 KIFEPWMDSMRTRGCEFLDGRRVTDFIY---------------DEERCCISDVVCGKETY--SAGAVVLAVGISTLQELI  124 (343)
Q Consensus        62 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~---------------~~~~g~v~~V~~~g~~~--~ad~VV~a~p~~~~~~Ll  124 (343)
                      .++++|.+.+++.|++|+.+++|++|..               ++  +++++|+++++++  +||.||+|++++.. +|+
T Consensus       182 ~l~~~L~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~~~~~~~~--~~v~~V~t~~g~i~~~Ad~VV~AtG~~s~-~l~  258 (448)
T 3axb_A          182 KVVDYYYRRASGAGVEFIFGRRVVGVELKPRVELGIEGEPLPWQE--ARASAAVLSDGTRVEVGEKLVVAAGVWSN-RLL  258 (448)
T ss_dssp             HHHHHHHHHHHHTTCEEEESCCEEEEEEEESSCCCCTTSSCTTSC--EEEEEEEETTSCEEEEEEEEEECCGGGHH-HHH
T ss_pred             HHHHHHHHHHHhCCCEEEcCCeEEEEEecccccccccccccccCC--CceEEEEeCCCEEeecCCEEEECCCcCHH-HHH
Confidence            6889999999999999999999999988               44  6777888875578  99999999999853 344


Q ss_pred             hhhcccCchhHHhhccCcccceEEEEEEeccCCCCCCCccee-ecCCCCc-cceEeeccc--cccccCCCC-CeEEEEEe
Q 019274          125 KNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNAC-SGFGDSL-AWTFFDLNK--IYDEHKDDS-ATVIQADF  199 (343)
Q Consensus       125 ~~~~~~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~~~~~-~~~~~~~-~~~~~d~~~--~~~~~~~~~-~~~i~~~~  199 (343)
                      +....          .+...+.-..++.++.... ....... ..+.... ...+++...  +.+.   ++ +.++.-..
T Consensus       259 ~~~g~----------~~~~~p~rg~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~y~~p~---~~~g~~~iG~~  324 (448)
T 3axb_A          259 NPLGI----------DTFSRPKKRMVFRVSASTE-GLRRIMREGDLAGAGAPPLIILPKRVLVRPA---PREGSFWVQLS  324 (448)
T ss_dssp             GGGTC----------CCSEEEEEEEEEEEECCSH-HHHHHHHHCCTTSSSSCCEEEETTTEEEEEE---TTTTEEEEEEC
T ss_pred             HHcCC----------CCcccccceEEEEeCCccc-ccccccccccccccCCCceEEcCCceEEeec---CCCCeEEEecC
Confidence            43111          0111222222333332210 0000000 0000000 001111100  0110   12 34432221


Q ss_pred             eC---CCCCCC--CCHHHH-HHHHHHHHhhhcccCCCCceeeeEEEecCCCcccc-CCCCCCCCCCCC-CCCCCeEEeec
Q 019274          200 YH---ANELMP--LKDDQV-VAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHF-FPGSYKYMMRGF-TSFPNLFMAGD  271 (343)
Q Consensus       200 ~~---~~~~~~--~~~~e~-~~~~~~~L~~~~p~~~~~~~~~~~~~r~~~~~~~~-~~g~~~~~p~~~-~~~~~L~laGd  271 (343)
                      ..   ...+..  ..+++. .+.+++.+.++||.+.+.+++..+.    .-. .. +++..   |... .+ +|||++..
T Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~~~~~w~----G~r-~~~t~d~~---p~ig~~~-~~l~~a~G  395 (448)
T 3axb_A          325 DNLGRPFALEEDPQPEEHYYSLAILPILSLYLPQFQDAYPSGGWA----GHY-DISFDANP---VVFEPWE-SGIVVAAG  395 (448)
T ss_dssp             CCTTSCBCCCSSCCCCHHHHHHHTHHHHHHHCGGGTTCCCSEEEE----EEE-EEETTSSC---EEECGGG-CSEEEEEC
T ss_pred             CcccCCcccccccCCChHHHHHHHHHHHHHhCcCcccCCcccceE----EEe-ccccCCCC---cEeeecC-CCEEEEEC
Confidence            11   112222  234556 8899999999999987544443321    111 12 33322   2111 13 89998865


Q ss_pred             cccCCCCCccchHHHHHHHHHHHHHHH
Q 019274          272 WITTRHGSWSQERSYVTGLEAANRVVD  298 (343)
Q Consensus       272 ~~~~g~~~~~~ega~~Sg~~aA~~il~  298 (343)
                      +  .++   ++.-+...|+.+|+.|+.
T Consensus       396 ~--~g~---G~~~ap~~g~~la~~i~~  417 (448)
T 3axb_A          396 T--SGS---GIMKSDSIGRVAAAVALG  417 (448)
T ss_dssp             C--TTC---CGGGHHHHHHHHHHHHTT
T ss_pred             C--Cch---hHhHhHHHHHHHHHHHcC
Confidence            5  233   345588899999988865

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=98.11  E-value=0.00027  Score=64.73  Aligned_cols=204  Identities=10%  Similarity=0.079  Sum_probs=108.6

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhhHHHhhhhhcccCchhHHhhcc
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLN  140 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~~~~Ll~~~~~~~~~~~~~~~~  140 (343)
                      ..+++.|.+.+++.|++|+.+++|++|..++  +. +.|++++++++||.||+|++.+.- ++++....          .
T Consensus       150 ~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~--~~-~~v~~~~g~~~a~~vV~A~G~~~~-~l~~~~g~----------~  215 (389)
T 2gf3_A          150 ENCIRAYRELAEARGAKVLTHTRVEDFDISP--DS-VKIETANGSYTADKLIVSMGAWNS-KLLSKLNL----------D  215 (389)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEECS--SC-EEEEETTEEEEEEEEEECCGGGHH-HHGGGGTE----------E
T ss_pred             HHHHHHHHHHHHHCCCEEEcCcEEEEEEecC--Ce-EEEEeCCCEEEeCEEEEecCccHH-HHhhhhcc----------C
Confidence            4588999999999999999999999999876  44 457777778999999999999753 34433110          0


Q ss_pred             CcccceEEEEEEeccCCC-CC--CCcceeecCCCCccceEeeccccccccCCCCC-eEE-EEEee----CCCCCCCCC--
Q 019274          141 LASIDVVSVKLWFDKKVT-VP--NVSNACSGFGDSLAWTFFDLNKIYDEHKDDSA-TVI-QADFY----HANELMPLK--  209 (343)
Q Consensus       141 l~~~~~~~v~l~~~~~~~-~~--~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~i-~~~~~----~~~~~~~~~--  209 (343)
                      +...+.-...+.++.... ..  .....++..+ .... +|    ..|.   +++ .++ ..+..    .........  
T Consensus       216 ~pl~~~rg~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~-~y----~~p~---~~g~~~~iG~~~~~~~~~~~~~~~~~~~  286 (389)
T 2gf3_A          216 IPLQPYRQVVGFFESDESKYSNDIDFPGFMVEV-PNGI-YY----GFPS---FGGCGLKLGYHTFGQKIDPDTINREFGV  286 (389)
T ss_dssp             CCCEEEEEEEEEECCCHHHHBGGGTCCEEEEEE-TTEE-EE----EECB---STTCCEEEEESSCCEECCTTTCCCCTTS
T ss_pred             CceEEEEEEEEEEecCcccccccccCCEEEEeC-CCCc-EE----EcCC---CCCCcEEEEEcCCCCccCcccccCccCC
Confidence            111222222333332210 00  0000011000 0000 11    0110   122 332 22111    111111112  


Q ss_pred             HHHHHHHHHHHHhhhcccCCCCceeeeEEEecCCCccccCCCCCCCCCCCCCCCCCeEEeeccccCCCCCccchHHHHHH
Q 019274          210 DDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTG  289 (343)
Q Consensus       210 ~~e~~~~~~~~L~~~~p~~~~~~~~~~~~~r~~~~~~~~~~g~~~~~p~~~~~~~~L~laGd~~~~g~~~~~~ega~~Sg  289 (343)
                      .++..+.+++.+.++||.+.+ .++..    |. +....+|+..... ......+|+|++..+  .|+   ++.-|..+|
T Consensus       287 ~~~~~~~l~~~~~~~~P~l~~-~~~~~----w~-g~r~~t~D~~p~i-g~~~~~~~l~~a~G~--~g~---G~~~ap~~g  354 (389)
T 2gf3_A          287 YPEDESNLRAFLEEYMPGANG-ELKRG----AV-CMYTKTLDEHFII-DLHPEHSNVVIAAGF--SGH---GFKFSSGVG  354 (389)
T ss_dssp             SHHHHHHHHHHHHHHCGGGCS-CEEEE----EE-EEEEECTTSCCEE-EEETTEEEEEEEECC--TTC---CGGGHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCCC-CceEE----EE-EEeccCCCCCeEE-ccCCCCCCEEEEECC--ccc---cccccHHHH
Confidence            345568999999999999865 44332    31 1122334322111 001235799988655  233   455688999


Q ss_pred             HHHHHHHHHH
Q 019274          290 LEAANRVVDY  299 (343)
Q Consensus       290 ~~aA~~il~~  299 (343)
                      +.+|+.|++.
T Consensus       355 ~~la~~i~~~  364 (389)
T 2gf3_A          355 EVLSQLALTG  364 (389)
T ss_dssp             HHHHHHHHHS
T ss_pred             HHHHHHHcCC
Confidence            9999999864

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=98.08  E-value=7.9e-05  Score=73.88  Aligned_cols=57  Identities=14%  Similarity=0.195  Sum_probs=49.3

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhH
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTL  120 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~  120 (343)
                      ..++++|.+.+++.|++|+++++|++|..++  ++ +.|++. |++++||.||+|++.+..
T Consensus       417 ~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~--~~-v~V~t~~G~~i~Ad~VVlAtG~~s~  474 (676)
T 3ps9_A          417 AELTRNVLELAQQQGLQIYYQYQLQNFSRKD--DC-WLLNFAGDQQATHSVVVLANGHQIS  474 (676)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCCEEEEEEET--TE-EEEEETTSCEEEESEEEECCGGGGG
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCeeeEEEEeC--Ce-EEEEECCCCEEECCEEEECCCcchh
Confidence            4588999999999999999999999999887  65 478875 578999999999999743

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=98.07  E-value=0.00017  Score=71.69  Aligned_cols=56  Identities=13%  Similarity=0.117  Sum_probs=48.5

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-Ce-EEecCEEEEeeChhh
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KE-TYSAGAVVLAVGIST  119 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~-~~~ad~VV~a~p~~~  119 (343)
                      ..++++|.+.+++.|++|+++++|++|..++  ++ +.|+++ |+ +++||.||+|++.+.
T Consensus       412 ~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~--~~-v~V~t~~G~~~i~Ad~VVlAtG~~s  469 (689)
T 3pvc_A          412 SDLTHALMMLAQQNGMTCHYQHELQRLKRID--SQ-WQLTFGQSQAAKHHATVILATGHRL  469 (689)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCCEEEEEECS--SS-EEEEEC-CCCCEEESEEEECCGGGT
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCeEeEEEEeC--Ce-EEEEeCCCcEEEECCEEEECCCcch
Confidence            4588999999999999999999999999987  55 467776 45 899999999999974

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=98.01  E-value=0.00076  Score=62.03  Aligned_cols=56  Identities=29%  Similarity=0.392  Sum_probs=47.7

Q ss_pred             hhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhhH
Q 019274           62 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL  120 (343)
Q Consensus        62 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~~  120 (343)
                      .++++|.+.+++.|++|+++++|++|..++  +.+ .|++++++++||.||+|++.+..
T Consensus       154 ~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~--~~v-~v~t~~g~i~a~~VV~A~G~~s~  209 (397)
T 2oln_A          154 GTLAALFTLAQAAGATLRAGETVTELVPDA--DGV-SVTTDRGTYRAGKVVLACGPYTN  209 (397)
T ss_dssp             HHHHHHHHHHHHTTCEEEESCCEEEEEEET--TEE-EEEESSCEEEEEEEEECCGGGHH
T ss_pred             HHHHHHHHHHHHcCCEEECCCEEEEEEEcC--CeE-EEEECCCEEEcCEEEEcCCcChH
Confidence            578899999999999999999999999876  554 47777668999999999998753

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=98.00  E-value=0.00042  Score=67.08  Aligned_cols=220  Identities=17%  Similarity=0.062  Sum_probs=114.6

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC----C--eEEecCEEEEeeChhhHHHhhhhhcccCchh
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG----K--ETYSAGAVVLAVGISTLQELIKNSILCNREE  134 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~----g--~~~~ad~VV~a~p~~~~~~Ll~~~~~~~~~~  134 (343)
                      ..++.+|++.+++.|++|+.+++|++|..++  +++++|++.    |  .+++||.||.|+++++-. +......  .  
T Consensus       170 ~~l~~~L~~~a~~~G~~i~~~~~V~~l~~~~--g~v~gV~~~d~~tg~~~~i~A~~VV~AaG~~s~~-l~~~~g~--~--  242 (561)
T 3da1_A          170 ARLTLEIMKEAVARGAVALNYMKVESFIYDQ--GKVVGVVAKDRLTDTTHTIYAKKVVNAAGPWVDT-LREKDRS--K--  242 (561)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESEEEEEEEEET--TEEEEEEEEETTTCCEEEEEEEEEEECCGGGHHH-HHHTTTC--C--
T ss_pred             HHHHHHHHHHHHHcCCEEEcCCEEEEEEEcC--CeEEEEEEEEcCCCceEEEECCEEEECCCcchHH-HHHhcCC--C--
Confidence            4588899999999999999999999999987  788888763    3  378999999999998632 3221110  0  


Q ss_pred             HHhhccCcccceEEEEEEeccCCCCCCCcceeecCCCCccceEeeccccccccCCCCCeEEEEEe--eCCCCCCCCCHHH
Q 019274          135 FLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADF--YHANELMPLKDDQ  212 (343)
Q Consensus       135 ~~~~~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~e  212 (343)
                          ......+.-..++.++.+.. +.....++... ..+..+|-    .|.   .+..++..+.  +..+.......++
T Consensus       243 ----~~~~v~p~kG~~lvl~~~~~-~~~~~~~~~~~-~dgr~v~~----iP~---~g~~~iGtT~~~~~~~~~~~~~t~~  309 (561)
T 3da1_A          243 ----HGKYLKLSKGVHLVVDQSRF-PLRQAVYFDTE-SDGRMIFA----IPR---EGKTYIGTTDTFYDKDIASPRMTVE  309 (561)
T ss_dssp             ----CSSEEEEEEEEEEEEEGGGS-CCSSEEEECCS-SSCCCEEE----EEE---TTEEEECCCCEEECSCTTCCCCCHH
T ss_pred             ----CCceEEeccEEEEEECCccC-CCceEEEeccC-CCCcEEEE----Eec---CCCEEEcCCCCccCCCcCCCCCCHH
Confidence                00112233345666665432 11122222210 01111111    111   1222322221  1111122223456


Q ss_pred             HHHHHHHHHhhhcccCC--CCceeeeEEEecCCCccccC-CCCC---CCCCC-CCCCCCCeE-EeeccccCCCCCccchH
Q 019274          213 VVAKAVSYLSKCIKDFS--TATVMDHKIRRFPKSLTHFF-PGSY---KYMMR-GFTSFPNLF-MAGDWITTRHGSWSQER  284 (343)
Q Consensus       213 ~~~~~~~~L~~~~p~~~--~~~~~~~~~~r~~~~~~~~~-~g~~---~~~p~-~~~~~~~L~-laGd~~~~g~~~~~~eg  284 (343)
                      -++.+++.+.++||++.  ..+++..+.    +--|... ++..   ..|.. .....+||. ++|.-         +..
T Consensus       310 ~i~~ll~~~~~~~P~l~~~~~~v~~~~a----GlRPl~~~~~~~~~~~sR~~~i~~~~~gli~i~Ggk---------~Tt  376 (561)
T 3da1_A          310 DRDYILAAANYMFPSLRLTADDVESSWA----GLRPLIHEEGKKASEISRKDEIFFSDSGLISIAGGK---------LTG  376 (561)
T ss_dssp             HHHHHHHHHHHHCTTCCCCTTTEEEEEE----EEEEEEEC-----------CCEEECSSCCEEECCCC---------STT
T ss_pred             HHHHHHHHHHHhCCCCCCChhhEEEEeE----EeccccCCCCCCccccccceEEEecCCCeEEEeCCh---------hhh
Confidence            67889999999999875  334544332    1111110 0100   01111 111235543 22321         122


Q ss_pred             HHHHHHHHHHHHHHHhCCCCcccc--cccCC
Q 019274          285 SYVTGLEAANRVVDYLGDGSFSKI--IPVEE  313 (343)
Q Consensus       285 a~~Sg~~aA~~il~~~~~~~~~~~--~~~~~  313 (343)
                      +-.-|+.+++.+.+.++....|+|  .|+.+
T Consensus       377 ~r~mAe~~~d~~~~~~~~~~~~~t~~~~l~g  407 (561)
T 3da1_A          377 YRKMAERTVDAVAQGLNVNEPCTTAAIRLSG  407 (561)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCCCCTTSCCCTT
T ss_pred             HHHHHHHHHHHHHHhcCCCCCCCcCCcccCC
Confidence            456788899999998887666754  44444

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=97.95  E-value=0.0013  Score=63.65  Aligned_cols=58  Identities=16%  Similarity=0.176  Sum_probs=49.1

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE----CCe--EEecCEEEEeeChhhH
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGISTL  120 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~----~g~--~~~ad~VV~a~p~~~~  120 (343)
                      ..++.++++.+++.|++|+.+++|++|..++  ++|++|++    .++  +++||.||.|+++++-
T Consensus       188 ~~l~~~l~~~a~~~Ga~i~~~t~V~~l~~~~--~~v~gV~~~d~~tg~~~~i~A~~VV~AaG~ws~  251 (571)
T 2rgh_A          188 ARLVIDNIKKAAEDGAYLVSKMKAVGFLYEG--DQIVGVKARDLLTDEVIEIKAKLVINTSGPWVD  251 (571)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSEEEEEEEEET--TEEEEEEEEETTTCCEEEEEBSCEEECCGGGHH
T ss_pred             HHHHHHHHHHHHHcCCeEEeccEEEEEEEeC--CEEEEEEEEEcCCCCEEEEEcCEEEECCChhHH
Confidence            3577888888999999999999999999887  78888875    332  7899999999999854

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=97.73  E-value=0.0057  Score=57.33  Aligned_cols=57  Identities=23%  Similarity=0.237  Sum_probs=47.7

Q ss_pred             hhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE----CCe--EEecCEEEEeeChhhH
Q 019274           62 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGISTL  120 (343)
Q Consensus        62 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~----~g~--~~~ad~VV~a~p~~~~  120 (343)
                      .+.+.|.+.+++.|++|+++++|++|..++  ++|++|++    +|+  +++||.||.|.+....
T Consensus       101 ~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~--~~v~gv~~~~~~~G~~~~~~ad~VV~AdG~~s~  163 (453)
T 3atr_A          101 LYNQRVLKEAQDRGVEIWDLTTAMKPIFED--GYVKGAVLFNRRTNEELTVYSKVVVEATGYSRS  163 (453)
T ss_dssp             HHHHHHHHHHHHTTCEEESSEEEEEEEEET--TEEEEEEEEETTTTEEEEEECSEEEECCGGGCT
T ss_pred             HHHHHHHHHHHHcCCEEEeCcEEEEEEEEC--CEEEEEEEEEcCCCceEEEEcCEEEECcCCchh
Confidence            477888888888999999999999999877  67766655    454  7899999999998764

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=97.68  E-value=0.0051  Score=55.97  Aligned_cols=57  Identities=14%  Similarity=0.082  Sum_probs=46.2

Q ss_pred             hhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC--Ce--EEecCEEEEeeChhhH
Q 019274           62 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KE--TYSAGAVVLAVGISTL  120 (343)
Q Consensus        62 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~--g~--~~~ad~VV~a~p~~~~  120 (343)
                      .+-+.|.+.+++.|++++++++|+++..++  +++.++...  ++  +++||.||-|-+..+.
T Consensus       103 ~~~~~L~~~a~~~G~~~~~~~~v~~~~~~~--~~~~~v~~~~~~~~~~~~a~~vIgAdG~~S~  163 (397)
T 3oz2_A          103 KFDKHLAALAAKAGADVWVKSPALGVIKEN--GKVAGAKIRHNNEIVDVRAKMVIAADGFESE  163 (397)
T ss_dssp             HHHHHHHHHHHHHTCEEESSCCEEEEEEET--TEEEEEEEEETTEEEEEEEEEEEECCCTTCH
T ss_pred             HHHHHHHHHHHhcCcEEeeeeeeeeeeecc--ceeeeeeecccccceEEEEeEEEeCCccccH
Confidence            356778888888999999999999999887  777666543  43  6899999999998764

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=97.65  E-value=0.01  Score=56.38  Aligned_cols=57  Identities=18%  Similarity=0.131  Sum_probs=48.1

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE----CCe--EEecCEEEEeeChhhH
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGISTL  120 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~----~g~--~~~ad~VV~a~p~~~~  120 (343)
                      ..++.+|.+.+++.|++|+.+++|++|..++  + +++|++    +|+  +++||.||.|++++.-
T Consensus       149 ~~l~~~l~~~a~~~Gv~i~~~~~V~~l~~~~--~-~~~V~~~d~~~G~~~~i~A~~VV~AtG~~s~  211 (501)
T 2qcu_A          149 ARLVLANAQMVVRKGGEVLTRTRATSARREN--G-LWIVEAEDIDTGKKYSWQARGLVNATGPWVK  211 (501)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSEEEEEEEEET--T-EEEEEEEETTTCCEEEEEESCEEECCGGGHH
T ss_pred             HHHHHHHHHHHHHcCCEEEcCcEEEEEEEeC--C-EEEEEEEECCCCCEEEEECCEEEECCChhHH
Confidence            4588899999999999999999999999865  3 567776    354  7899999999999864

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=97.36  E-value=0.029  Score=54.37  Aligned_cols=58  Identities=12%  Similarity=0.218  Sum_probs=49.0

Q ss_pred             hhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-------C---------eEEecCEEEEeeChhhH
Q 019274           62 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-------K---------ETYSAGAVVLAVGISTL  120 (343)
Q Consensus        62 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-------g---------~~~~ad~VV~a~p~~~~  120 (343)
                      .|.+.|.+.+++.|++|+.+++|++|..+++ |+|++|++.       |         .+++||.||.|.+....
T Consensus       145 ~l~~~L~~~a~~~Gv~i~~g~~v~~l~~~~~-g~V~gV~~~~~g~~~~G~~~~~~~~g~~i~Ad~VV~AdG~~S~  218 (584)
T 2gmh_A          145 HLVSWMGEQAEALGVEVYPGYAAAEILFHED-GSVKGIATNDVGIQKDGAPKTTFERGLELHAKVTIFAEGCHGH  218 (584)
T ss_dssp             HHHHHHHHHHHHTTCEEETTCCEEEEEECTT-SSEEEEEECCEEECTTSCEEEEEECCCEEECSEEEECCCTTCH
T ss_pred             HHHHHHHHHHHHcCCEEEcCCEEEEEEEcCC-CCEEEEEeCCccccCCCCcccccCCceEEECCEEEEeeCCCch
Confidence            4778899999999999999999999998765 677778764       2         57899999999999764

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=97.35  E-value=0.0079  Score=55.49  Aligned_cols=58  Identities=14%  Similarity=0.095  Sum_probs=46.6

Q ss_pred             hhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-Ce--EEecCEEEEeeChhhH
Q 019274           62 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KE--TYSAGAVVLAVGISTL  120 (343)
Q Consensus        62 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~--~~~ad~VV~a~p~~~~  120 (343)
                      .+.+.|.+.+++.|++|+.+++|++|..+++ +.++.|.+. |+  +++||.||.|.+....
T Consensus       107 ~~~~~L~~~a~~~gv~i~~~~~v~~i~~~~~-~~~v~v~~~~g~~~~~~a~~vV~A~G~~s~  167 (421)
T 3nix_A          107 NFDKTLADEAARQGVDVEYEVGVTDIKFFGT-DSVTTIEDINGNKREIEARFIIDASGYGRV  167 (421)
T ss_dssp             HHHHHHHHHHHHHTCEEECSEEEEEEEEETT-EEEEEEEETTSCEEEEEEEEEEECCGGGCH
T ss_pred             HHHHHHHHHHHhCCCEEEcCCEEEEEEEeCC-EEEEEEEcCCCCEEEEEcCEEEECCCCchh
Confidence            4778888888888999999999999998763 433455555 55  6899999999998764

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=97.32  E-value=0.00062  Score=58.15  Aligned_cols=86  Identities=16%  Similarity=0.144  Sum_probs=57.0

Q ss_pred             CCHHHHHHHHHHHHhhhcccCCCCceeeeEEEecCCCccccCCCCCCCCCCCCCCCCCeEEeeccccCCCCCccchHHHH
Q 019274          208 LKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYV  287 (343)
Q Consensus       208 ~~~~e~~~~~~~~L~~~~p~~~~~~~~~~~~~r~~~~~~~~~~g~~~~~p~~~~~~~~L~laGd~~~~g~~~~~~ega~~  287 (343)
                      ....+..+.....+...+..... .+....+.+|..+.+.....    .+...+..+|+|+|||++.+    .++++|+.
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~w~~a~~~~~~~----~~~~~~~~~~v~l~GDa~~g----~gv~~A~~  314 (336)
T 3kkj_A          244 ASREQVIEHLHGAFAELIDCTMP-APVFSLAHRWLYARPAGAHE----WGALSDADLGIYVCGDWCLS----GRVEGAWL  314 (336)
T ss_dssp             SCHHHHHHHHHHHHHTTCSSCCC-CCSEEEEEEEEEEEESSCCC----CSSEEETTTTEEECCGGGTT----SSHHHHHH
T ss_pred             ccchhhhhhhhhhhhhhccCCcC-cchheeccceeecccccccC----ccceeeCCCCEEEEecccCC----cCHHHHHH
Confidence            34566666777777766644332 45555667775544322111    11122456899999999752    47899999


Q ss_pred             HHHHHHHHHHHHhCC
Q 019274          288 TGLEAANRVVDYLGD  302 (343)
Q Consensus       288 Sg~~aA~~il~~~~~  302 (343)
                      ||+.||+.|++.|..
T Consensus       315 sG~~aA~~I~~~L~~  329 (336)
T 3kkj_A          315 SGQEAARRLLEHLQL  329 (336)
T ss_dssp             HHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhhc
Confidence            999999999999875

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=97.19  E-value=0.013  Score=56.06  Aligned_cols=62  Identities=21%  Similarity=0.233  Sum_probs=47.6

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCC---eEEEEEEC-C---eEEecCEEEEeeChhhH-HHhh
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERC---CISDVVCG-K---ETYSAGAVVLAVGISTL-QELI  124 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g---~v~~V~~~-g---~~~~ad~VV~a~p~~~~-~~Ll  124 (343)
                      ..|.+.|.+.+++.|++|+++++|++|..+++ +   .|+ |++. +   .+++||.||.|.+..+. .+.+
T Consensus       120 ~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~-~~~~~v~-v~~~~~~~~~~i~a~~vV~AdG~~S~vR~~l  189 (535)
T 3ihg_A          120 DKLEPILLAQARKHGGAIRFGTRLLSFRQHDD-DAGAGVT-ARLAGPDGEYDLRAGYLVGADGNRSLVRESL  189 (535)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCEEEEEEEECG-GGCSEEE-EEEEETTEEEEEEEEEEEECCCTTCHHHHHT
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEECCC-CccccEE-EEEEcCCCeEEEEeCEEEECCCCcchHHHHc
Confidence            35778888899999999999999999998772 2   443 4433 3   57899999999999763 3444

>2e1m_B L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=97.13  E-value=0.0003  Score=53.94  Aligned_cols=113  Identities=10%  Similarity=0.021  Sum_probs=51.1

Q ss_pred             eEEecCEEEEeeChhhHHHhhhhhcccCchhHHhhccCcccceEEEEEEeccCCCCCCCcceeecCCCCccceEeecccc
Q 019274          104 ETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKI  183 (343)
Q Consensus       104 ~~~~ad~VV~a~p~~~~~~Ll~~~~~~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  183 (343)
                      ++++||+||+|+|+..+.++.-.+.++ ....++++++.+....++.+.|++++|.+..   ..          ++.+ .
T Consensus         4 ~~~~Ad~VIvTvP~~vL~~I~F~P~LP-~~k~~Ai~~l~~g~~~Kv~l~f~~~FW~~~~---~~----------gd~s-~   68 (130)
T 2e1m_B            4 QTWTGDLAIVTIPFSSLRFVKVTPPFS-YKKRRAVIETHYDQATKVLLEFSRRWWEFTE---AD----------WKRE-L   68 (130)
T ss_dssp             EEEEESEEEECSCHHHHTTSEEESCCC-HHHHHHHHHCCEECEEEEEEEESSCGGGCCH---HH----------HHHH-H
T ss_pred             eEEEcCEEEEcCCHHHHhcCcCCCCCC-HHHHHHHHhCCCcceeEEEEEECCCCCCCCC---cc----------cccc-C
Confidence            478999999999999988764444453 4556788999999999999999999984321   10          1111 0


Q ss_pred             ccccCCCCCeEEEEE-ee-CCCCCCCCCHHHHHHHHHHHHhhhcccCCCCceee
Q 019274          184 YDEHKDDSATVIQAD-FY-HANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMD  235 (343)
Q Consensus       184 ~~~~~~~~~~~i~~~-~~-~~~~~~~~~~~e~~~~~~~~L~~~~p~~~~~~~~~  235 (343)
                      .+.   ..+.++.+. +. .+..|..+++ +..+.++..|..++|+....+++.
T Consensus        69 ~~~---~pg~l~~f~~wg~~A~~~~~l~~-~~r~~~~~~l~~~~p~~~~~~~~~  118 (130)
T 2e1m_B           69 DAI---APGLYDYYQQWGEDDAEAALALP-QSVRNLPTGLLGAHPSVDESRIGE  118 (130)
T ss_dssp             HHH---STTHHHHHHHHCCCSCCCC-----------------------------
T ss_pred             CCC---CCeEEEEecccCHHHHHHhcCCH-HHHHHHHHHHHHhCCCCcHHHHHH
Confidence            000   112211111 01 2334566654 677889999999999765324443

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=97.09  E-value=0.0053  Score=56.57  Aligned_cols=58  Identities=17%  Similarity=0.123  Sum_probs=45.0

Q ss_pred             hhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhH-HHhh
Q 019274           62 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTL-QELI  124 (343)
Q Consensus        62 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~-~~Ll  124 (343)
                      .|.+.|.+.+++  ++|+++++|++|..++  +.+ .|++. |++++||.||.|.+.... .+.+
T Consensus       128 ~l~~~L~~~~~~--~~i~~~~~v~~i~~~~--~~v-~v~~~~g~~~~a~~vV~AdG~~S~vr~~l  187 (407)
T 3rp8_A          128 ELQREMLDYWGR--DSVQFGKRVTRCEEDA--DGV-TVWFTDGSSASGDLLIAADGSHSALRPWV  187 (407)
T ss_dssp             HHHHHHHHHHCG--GGEEESCCEEEEEEET--TEE-EEEETTSCEEEESEEEECCCTTCSSHHHH
T ss_pred             HHHHHHHHhCCc--CEEEECCEEEEEEecC--CcE-EEEEcCCCEEeeCEEEECCCcChHHHHHh
Confidence            366777777765  8999999999999887  554 46665 678999999999998764 4444

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=97.05  E-value=0.0014  Score=61.54  Aligned_cols=65  Identities=15%  Similarity=0.264  Sum_probs=53.9

Q ss_pred             EeecCCCchhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhh
Q 019274           53 VWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST  119 (343)
Q Consensus        53 ~~~~gG~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~  119 (343)
                      .+|..+-...+.+.|.+.+++.|++|+++++|++|..++  +++++|++. |++++||.||+|++...
T Consensus       126 ~~p~~~~~~~l~~~L~~~~~~~GV~i~~~~~V~~i~~~~--~~v~~V~~~~G~~i~Ad~VVlAtGg~s  191 (447)
T 2i0z_A          126 MFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYEN--GQTKAVILQTGEVLETNHVVIAVGGKS  191 (447)
T ss_dssp             EEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEET--TEEEEEEETTCCEEECSCEEECCCCSS
T ss_pred             EECCCCCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEecC--CcEEEEEECCCCEEECCEEEECCCCCc
Confidence            355433246789999999999999999999999999876  777888887 45699999999999876

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=97.02  E-value=0.018  Score=54.84  Aligned_cols=57  Identities=16%  Similarity=0.142  Sum_probs=47.8

Q ss_pred             hhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC---C--eEEecCEEEEeeChhhH
Q 019274           62 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG---K--ETYSAGAVVLAVGISTL  120 (343)
Q Consensus        62 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~---g--~~~~ad~VV~a~p~~~~  120 (343)
                      .+.+.|.+.+++.|++|+.+++|++|..++  +++.+|++.   |  .+++||.||.|.+....
T Consensus       112 ~l~~~L~~~a~~~Gv~i~~~~~V~~v~~~~--~~v~gv~~~~~dG~~~~i~ad~VI~AdG~~S~  173 (512)
T 3e1t_A          112 RFDDMLLRNSERKGVDVRERHEVIDVLFEG--ERAVGVRYRNTEGVELMAHARFIVDASGNRTR  173 (512)
T ss_dssp             HHHHHHHHHHHHTTCEEESSCEEEEEEEET--TEEEEEEEECSSSCEEEEEEEEEEECCCTTCS
T ss_pred             HHHHHHHHHHHhCCCEEEcCCEEEEEEEEC--CEEEEEEEEeCCCCEEEEEcCEEEECCCcchH
Confidence            477888888888999999999999999877  777767653   4  37899999999999763

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=97.00  E-value=0.033  Score=50.87  Aligned_cols=57  Identities=9%  Similarity=0.011  Sum_probs=45.1

Q ss_pred             hhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE--CCe--EEecCEEEEeeChhhH
Q 019274           62 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSAGAVVLAVGISTL  120 (343)
Q Consensus        62 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~--~g~--~~~ad~VV~a~p~~~~  120 (343)
                      .+.+.|.+.+.+.|++|+++++|++|..+++ +. +.|++  +|+  +++||.||.|.+....
T Consensus       104 ~l~~~L~~~~~~~g~~i~~~~~v~~i~~~~~-~~-~~v~~~~~g~~~~~~a~~vV~AdG~~S~  164 (394)
T 1k0i_A          104 EVTRDLMEAREACGATTVYQAAEVRLHDLQG-ER-PYVTFERDGERLRLDCDYIAGCDGFHGI  164 (394)
T ss_dssp             HHHHHHHHHHHHTTCEEESSCEEEEEECTTS-SS-CEEEEEETTEEEEEECSEEEECCCTTCS
T ss_pred             HHHHHHHHHHHhcCCeEEeceeEEEEEEecC-Cc-eEEEEecCCcEEEEEeCEEEECCCCCcH
Confidence            4677888888888999999999999987642 33 34554  565  6899999999999764

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=96.95  E-value=0.0051  Score=55.43  Aligned_cols=188  Identities=12%  Similarity=0.040  Sum_probs=99.5

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhhHHHhhhhhcccCchhHHhhcc
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLN  140 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~~~~Ll~~~~~~~~~~~~~~~~  140 (343)
                      ..++++|.+.+++.|++|+. ++|++|...+  +           ++||.||+|++++... |++.              
T Consensus       142 ~~~~~~l~~~~~~~Gv~i~~-~~V~~i~~~~--~-----------~~a~~VV~A~G~~s~~-l~~~--------------  192 (351)
T 3g3e_A          142 KNYLQWLTERLTERGVKFFQ-RKVESFEEVA--R-----------EGADVIVNCTGVWAGA-LQRD--------------  192 (351)
T ss_dssp             HHHHHHHHHHHHHTTCEEEE-CCCCCHHHHH--H-----------TTCSEEEECCGGGGGG-TSCC--------------
T ss_pred             HHHHHHHHHHHHHCCCEEEE-EEeCCHHHhh--c-----------CCCCEEEECCCcChHh-hcCC--------------
Confidence            35889999999999999998 8998886432  1           4699999999998743 3322              


Q ss_pred             CcccceEEEEEEeccCCCCCCCcceeecCC---CCccceEeeccccccccCCCCCeEEEEEeeCCCCCCCCCHHHHHHHH
Q 019274          141 LASIDVVSVKLWFDKKVTVPNVSNACSGFG---DSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKA  217 (343)
Q Consensus       141 l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~e~~~~~  217 (343)
                      +...+.-..++.++.+ ...  .. ++..+   ......++     .+.   ++.-++...... ..+....+++..+.+
T Consensus       193 ~~l~p~rg~~~~~~~~-~~~--~~-~~~~~~~~~~~~~~y~-----~p~---~~~~~iGg~~~~-~~~~~~~~~~~~~~l  259 (351)
T 3g3e_A          193 PLLQPGRGQIMKVDAP-WMK--HF-ILTHDPERGIYNSPYI-----IPG---TQTVTLGGIFQL-GNWSELNNIQDHNTI  259 (351)
T ss_dssp             TTCEEEEEEEEEEECT-TCC--SE-EEECCTTTCTTCSCEE-----EEC---SSCEEEECCCEE-TCCCCSCCHHHHHHH
T ss_pred             CceeecCCcEEEEeCC-Ccc--eE-EEeccccCCCCceeEE-----EeC---CCcEEEeeeeec-CCCCCCCCHHHHHHH
Confidence            1111222233333432 111  11 11110   00001111     010   122222211111 122222356678899


Q ss_pred             HHHHhhhcccCCCCceeeeEEEecCCCccccCCCCCCC-CCCC--CCCCCCeEEeeccccCCCCCccchHHHHHHHHHHH
Q 019274          218 VSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKY-MMRG--FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAAN  294 (343)
Q Consensus       218 ~~~L~~~~p~~~~~~~~~~~~~r~~~~~~~~~~g~~~~-~p~~--~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~  294 (343)
                      ++.+.++||.+.+.+++..+.    .- ...+|+ ... .+..  ....+|+|++..+  .|   .++.-+..+|+.+|+
T Consensus       260 ~~~~~~~~P~l~~~~i~~~w~----G~-r~~t~D-~p~~~~~ig~~~~~~~~~~~~G~--~g---~G~~~ap~~g~~la~  328 (351)
T 3g3e_A          260 WEGCCRLEPTLKNARIIGERT----GF-RPVRPQ-IRLEREQLRTGPSNTEVIHNYGH--GG---YGLTIHWGCALEAAK  328 (351)
T ss_dssp             HHHHHHHCGGGGGCEEEEEEE----EE-EEECSS-CEEEEEEECCSSSCEEEEEEECC--TT---CHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCccCCcEeeeeE----ee-CCCCCC-ccceeeeccCCCCCCeEEEEeCC--Cc---chHhhhHHHHHHHHH
Confidence            999999999986544443322    11 112222 110 0000  1125789988654  23   456678899999999


Q ss_pred             HHHHHhC
Q 019274          295 RVVDYLG  301 (343)
Q Consensus       295 ~il~~~~  301 (343)
                      .|.+.+.
T Consensus       329 li~~~~~  335 (351)
T 3g3e_A          329 LFGRILE  335 (351)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9987664

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=96.86  E-value=0.0054  Score=59.62  Aligned_cols=58  Identities=21%  Similarity=0.123  Sum_probs=47.7

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC--C--eEEecCEEEEeeChhhH
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--K--ETYSAGAVVLAVGISTL  120 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~--g--~~~~ad~VV~a~p~~~~  120 (343)
                      ..+.+.|.+.+++.|++|+.+++|++|..++  +.+++|++.  |  .+++||.||.|.+....
T Consensus       128 ~~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~~--g~~~~V~~~~~G~~~~i~AdlVV~AdG~~S~  189 (591)
T 3i3l_A          128 EEFDKLLLDEARSRGITVHEETPVTDVDLSD--PDRVVLTVRRGGESVTVESDFVIDAGGSGGP  189 (591)
T ss_dssp             HHHHHHHHHHHHHTTCEEETTCCEEEEECCS--TTCEEEEEEETTEEEEEEESEEEECCGGGCH
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC--CCEEEEEEecCCceEEEEcCEEEECCCCcch
Confidence            3477888888989999999999999999875  445677764  5  47899999999998764

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=96.86  E-value=0.0022  Score=65.02  Aligned_cols=57  Identities=14%  Similarity=0.159  Sum_probs=51.3

Q ss_pred             hhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhhH
Q 019274           62 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL  120 (343)
Q Consensus        62 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~~  120 (343)
                      .++++|.+.+++.|++|+++++|++|..++  +++++|++++++++||.||+|++++..
T Consensus       152 ~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~~--~~v~~V~t~~G~i~Ad~VV~AaG~~s~  208 (830)
T 1pj5_A          152 RAVQLLIKRTESAGVTYRGSTTVTGIEQSG--GRVTGVQTADGVIPADIVVSCAGFWGA  208 (830)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCEEEEEEET--TEEEEEEETTEEEECSEEEECCGGGHH
T ss_pred             HHHHHHHHHHHHcCCEEECCceEEEEEEeC--CEEEEEEECCcEEECCEEEECCccchH
Confidence            588999999999999999999999999877  677788888778999999999999863

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=96.76  E-value=0.0029  Score=60.86  Aligned_cols=57  Identities=28%  Similarity=0.293  Sum_probs=50.5

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhh
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST  119 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~  119 (343)
                      ..+.+.|.+.+++.|++|+++++|++|..++  +++++|+++ |++++||.||+|++...
T Consensus       220 ~~l~~~L~~~l~~~Gv~I~~~t~V~~I~~~~--~~v~gV~l~~G~~i~Ad~VVlA~G~~s  277 (549)
T 3nlc_A          220 VTMIEKMRATIIELGGEIRFSTRVDDLHMED--GQITGVTLSNGEEIKSRHVVLAVGHSA  277 (549)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCCEEEEEESS--SBEEEEEETTSCEEECSCEEECCCTTC
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEEEEEEEeC--CEEEEEEECCCCEEECCEEEECCCCCh
Confidence            4588889999999999999999999999887  678889887 56899999999999876

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=96.67  E-value=0.0043  Score=57.43  Aligned_cols=58  Identities=19%  Similarity=0.253  Sum_probs=50.0

Q ss_pred             chhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhh
Q 019274           60 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST  119 (343)
Q Consensus        60 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~  119 (343)
                      ...+.+.+.+.++++|++|+++++|++|..++  +++.+|++. |++++||.||++++...
T Consensus       193 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~--~~v~~v~l~dG~~i~aD~Vv~a~G~~p  251 (415)
T 3lxd_A          193 GEALSEFYQAEHRAHGVDLRTGAAMDCIEGDG--TKVTGVRMQDGSVIPADIVIVGIGIVP  251 (415)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEETCCEEEEEESS--SBEEEEEESSSCEEECSEEEECSCCEE
T ss_pred             CHHHHHHHHHHHHhCCCEEEECCEEEEEEecC--CcEEEEEeCCCCEEEcCEEEECCCCcc
Confidence            45678888999999999999999999998876  777788886 67899999999998744

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=96.67  E-value=0.0046  Score=57.05  Aligned_cols=58  Identities=22%  Similarity=0.273  Sum_probs=50.2

Q ss_pred             chhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhh
Q 019274           60 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST  119 (343)
Q Consensus        60 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~  119 (343)
                      ...+.+.+.+.+++.|++|+++++|++|..++  +++.+|++. |++++||.||++++...
T Consensus       183 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~--~~v~~V~~~dG~~i~aD~Vv~a~G~~p  241 (404)
T 3fg2_P          183 TPEISSYFHDRHSGAGIRMHYGVRATEIAAEG--DRVTGVVLSDGNTLPCDLVVVGVGVIP  241 (404)
T ss_dssp             CHHHHHHHHHHHHHTTCEEECSCCEEEEEEET--TEEEEEEETTSCEEECSEEEECCCEEE
T ss_pred             CHHHHHHHHHHHHhCCcEEEECCEEEEEEecC--CcEEEEEeCCCCEEEcCEEEECcCCcc
Confidence            45678889999999999999999999998876  778888886 67899999999998743

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=96.64  E-value=0.0033  Score=56.99  Aligned_cols=56  Identities=18%  Similarity=0.285  Sum_probs=47.9

Q ss_pred             hhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhhH
Q 019274           62 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL  120 (343)
Q Consensus        62 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~~  120 (343)
                      .++++|.+.+++.|++|+.+++|++|..++  ++ +.|++++++++||.||+|++++.-
T Consensus       150 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~--~~-~~v~~~~g~~~a~~vV~a~G~~s~  205 (372)
T 2uzz_A          150 LAIKTWIQLAKEAGCAQLFNCPVTAIRHDD--DG-VTIETADGEYQAKKAIVCAGTWVK  205 (372)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCEEEEEECS--SS-EEEEESSCEEEEEEEEECCGGGGG
T ss_pred             HHHHHHHHHHHHCCCEEEcCCEEEEEEEcC--CE-EEEEECCCeEEcCEEEEcCCccHH
Confidence            588999999999999999999999999877  44 457777557999999999998753

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=96.55  E-value=0.0054  Score=56.93  Aligned_cols=63  Identities=17%  Similarity=0.260  Sum_probs=52.3

Q ss_pred             EeecCCCchhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhh
Q 019274           53 VWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST  119 (343)
Q Consensus        53 ~~~~gG~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~  119 (343)
                      .++... ...+.+.|.+.+++.|++|+++++|++|..++  +. +.|.+.+++++||.||+|++...
T Consensus       125 ~~~~~~-~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~--~~-~~V~~~~g~i~ad~VIlAtG~~S  187 (417)
T 3v76_A          125 LFCDHS-AKDIIRMLMAEMKEAGVQLRLETSIGEVERTA--SG-FRVTTSAGTVDAASLVVASGGKS  187 (417)
T ss_dssp             EEESSC-HHHHHHHHHHHHHHHTCEEECSCCEEEEEEET--TE-EEEEETTEEEEESEEEECCCCSS
T ss_pred             EeeCCC-HHHHHHHHHHHHHHCCCEEEECCEEEEEEEeC--CE-EEEEECCcEEEeeEEEECCCCcc
Confidence            345434 45799999999999999999999999999877  54 56888766899999999999875

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=96.54  E-value=0.0042  Score=59.27  Aligned_cols=57  Identities=21%  Similarity=0.303  Sum_probs=49.1

Q ss_pred             hhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC--Ce--EEecC-EEEEeeChhh
Q 019274           62 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KE--TYSAG-AVVLAVGIST  119 (343)
Q Consensus        62 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~--g~--~~~ad-~VV~a~p~~~  119 (343)
                      .+++.|.+.+++.|++|+++++|++|..+++ |+|++|++.  ++  +++|| .||+|++...
T Consensus       203 ~l~~~L~~~~~~~Gv~i~~~t~v~~L~~~~~-g~v~GV~~~~~g~~~~i~A~k~VVlAtGG~~  264 (510)
T 4at0_A          203 MLMKPLVETAEKLGVRAEYDMRVQTLVTDDT-GRVVGIVAKQYGKEVAVRARRGVVLATGSFA  264 (510)
T ss_dssp             HHHHHHHHHHHHTTCEEECSEEEEEEEECTT-CCEEEEEEEETTEEEEEEEEEEEEECCCCCT
T ss_pred             HHHHHHHHHHHHcCCEEEecCEeEEEEECCC-CcEEEEEEEECCcEEEEEeCCeEEEeCCChh
Confidence            6899999999999999999999999999843 888888774  43  58996 9999999875

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=96.50  E-value=0.0067  Score=58.72  Aligned_cols=58  Identities=19%  Similarity=0.230  Sum_probs=49.0

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE---CCe--EEecCEEEEeeChhh
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---GKE--TYSAGAVVLAVGIST  119 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~---~g~--~~~ad~VV~a~p~~~  119 (343)
                      ..+.+.|.+.+++.|++|+++++|++|..+++ |+|++|++   +|+  +++||.||+|++...
T Consensus       255 ~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~-g~v~Gv~~~~~~g~~~~i~a~~VVlAtGg~~  317 (571)
T 1y0p_A          255 AHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDK-GTVKGILVKGMYKGYYWVKADAVILATGGFA  317 (571)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSEEEEEEEECTT-SCEEEEEEEETTTEEEEEECSEEEECCCCCT
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEeeEeEEcCC-CeEEEEEEEeCCCcEEEEECCeEEEeCCCcc
Confidence            46889999999999999999999999998754 67877765   354  689999999999864

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=96.37  E-value=0.0065  Score=58.75  Aligned_cols=58  Identities=19%  Similarity=0.275  Sum_probs=49.0

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE---CCe--EEecCEEEEeeChhh
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---GKE--TYSAGAVVLAVGIST  119 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~---~g~--~~~ad~VV~a~p~~~  119 (343)
                      ..+.+.|.+.+++.|++|+++++|++|..+++ |+|++|++   +|+  +++||.||+|++...
T Consensus       250 ~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~-g~v~Gv~~~~~~g~~~~i~A~~VVlAtGg~s  312 (566)
T 1qo8_A          250 PEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDD-HSVVGAVVHGKHTGYYMIGAKSVVLATGGYG  312 (566)
T ss_dssp             HHHHHHHHHHHHHTTCCEECSEEEEEEEECTT-SBEEEEEEEETTTEEEEEEEEEEEECCCCCT
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEEEEEEECCC-CcEEEEEEEeCCCcEEEEEcCEEEEecCCcc
Confidence            45889999999999999999999999998764 67877766   354  689999999999866

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=96.29  E-value=0.2  Score=47.49  Aligned_cols=60  Identities=17%  Similarity=0.123  Sum_probs=47.2

Q ss_pred             hhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-Ce---EEecCEEEEeeChhhH-HHhh
Q 019274           62 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KE---TYSAGAVVLAVGISTL-QELI  124 (343)
Q Consensus        62 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~---~~~ad~VV~a~p~~~~-~~Ll  124 (343)
                      .+.+.|.+.+++.|++|+++++|++|..++  +.|+ |++. ++   +++||.||.|.+..+. .+.+
T Consensus       108 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~v~-v~~~~~~g~~~~~a~~vVgADG~~S~VR~~l  172 (499)
T 2qa2_A          108 TTESVLEEWALGRGAELLRGHTVRALTDEG--DHVV-VEVEGPDGPRSLTTRYVVGCDGGRSTVRKAA  172 (499)
T ss_dssp             HHHHHHHHHHHHTTCEEEESCEEEEEEECS--SCEE-EEEECSSCEEEEEEEEEEECCCTTCHHHHHT
T ss_pred             HHHHHHHHHHHhCCCEEEcCCEEEEEEEeC--CEEE-EEEEcCCCcEEEEeCEEEEccCcccHHHHHc
Confidence            477788888888899999999999999877  4443 5553 32   7899999999999874 3454

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=96.29  E-value=0.053  Score=48.86  Aligned_cols=45  Identities=24%  Similarity=0.252  Sum_probs=37.1

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhhH
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL  120 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~~  120 (343)
                      ..++++|.+.+++.|++|+. ++|++|..    .  .       + +||.||.|++.+.-
T Consensus       142 ~~~~~~l~~~~~~~G~~i~~-~~v~~l~~----~--~-------~-~a~~VV~A~G~~s~  186 (363)
T 1c0p_A          142 PKYCQYLARELQKLGATFER-RTVTSLEQ----A--F-------D-GADLVVNATGLGAK  186 (363)
T ss_dssp             HHHHHHHHHHHHHTTCEEEE-CCCSBGGG----T--C-------S-SCSEEEECCGGGGG
T ss_pred             HHHHHHHHHHHHHCCCEEEE-EEcccHhh----c--C-------c-CCCEEEECCCcchh
Confidence            45889999999999999998 99998742    2  1       2 79999999999874

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=96.26  E-value=0.01  Score=57.37  Aligned_cols=58  Identities=22%  Similarity=0.258  Sum_probs=47.5

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC---Ce--EEecCEEEEeeChhh
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG---KE--TYSAGAVVLAVGIST  119 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~---g~--~~~ad~VV~a~p~~~  119 (343)
                      ..+.+.|.+.+++.|++|+++++|++|..+++ |+|++|++.   |+  ++.||.||+|++...
T Consensus       255 ~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~~-g~v~GV~~~~~~G~~~~i~A~~VVlAtGg~~  317 (572)
T 1d4d_A          255 AHVAQVLWDNAVKRGTDIRLNSRVVRILEDAS-GKVTGVLVKGEYTGYYVIKADAVVIAAGGFA  317 (572)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSEEEEEEEEC---CCEEEEEEEETTTEEEEEECSEEEECCCCCT
T ss_pred             HHHHHHHHHHHHHcCCeEEecCEEEEEEECCC-CeEEEEEEEeCCCcEEEEEcCEEEEeCCCCc
Confidence            46889999999999999999999999987653 578777663   54  689999999999754

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=96.25  E-value=0.22  Score=47.10  Aligned_cols=60  Identities=17%  Similarity=0.082  Sum_probs=47.2

Q ss_pred             hhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-Ce---EEecCEEEEeeChhhH-HHhh
Q 019274           62 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KE---TYSAGAVVLAVGISTL-QELI  124 (343)
Q Consensus        62 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~---~~~ad~VV~a~p~~~~-~~Ll  124 (343)
                      .+.+.|.+.+++.|++|+++++|++|..++  +.|+ |++. ++   +++||.||.|.+..+. .+.+
T Consensus       107 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~v~-v~~~~~~g~~~~~a~~vVgADG~~S~VR~~l  171 (500)
T 2qa1_A          107 VTETHLEQWATGLGADIRRGHEVLSLTDDG--AGVT-VEVRGPEGKHTLRAAYLVGCDGGRSSVRKAA  171 (500)
T ss_dssp             HHHHHHHHHHHHTTCEEEETCEEEEEEEET--TEEE-EEEEETTEEEEEEESEEEECCCTTCHHHHHT
T ss_pred             HHHHHHHHHHHHCCCEEECCcEEEEEEEcC--CeEE-EEEEcCCCCEEEEeCEEEECCCcchHHHHHc
Confidence            467788888888899999999999999887  4554 5553 32   7899999999999875 3444

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=96.23  E-value=0.0084  Score=56.17  Aligned_cols=58  Identities=12%  Similarity=0.200  Sum_probs=48.9

Q ss_pred             chhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhh
Q 019274           60 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST  119 (343)
Q Consensus        60 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~  119 (343)
                      ...+.+.+.+.+++.|++|+++++|++|..++  +++..|.++|++++||.||+|++...
T Consensus       190 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~--~~v~~v~~~g~~i~~D~vv~a~G~~p  247 (452)
T 2cdu_A          190 DKEFTDILAKDYEAHGVNLVLGSKVAAFEEVD--DEIITKTLDGKEIKSDIAILCIGFRP  247 (452)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEESSCEEEEEEET--TEEEEEETTSCEEEESEEEECCCEEE
T ss_pred             hhhHHHHHHHHHHHCCCEEEcCCeeEEEEcCC--CeEEEEEeCCCEEECCEEEECcCCCC
Confidence            45578889999999999999999999998655  66766777778899999999998643

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=96.05  E-value=0.082  Score=51.05  Aligned_cols=60  Identities=20%  Similarity=0.141  Sum_probs=47.4

Q ss_pred             hhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE--C-C-eEEecCEEEEeeChhhH-HHhh
Q 019274           62 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--G-K-ETYSAGAVVLAVGISTL-QELI  124 (343)
Q Consensus        62 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~--~-g-~~~~ad~VV~a~p~~~~-~~Ll  124 (343)
                      .+.+.|.+.+++.|++|+.+++|++|..++  +.| .|++  . | .+++||.||.|.+..+. .+.+
T Consensus       149 ~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~--~~v-~v~~~~~~G~~~~~a~~vV~ADG~~S~vR~~l  213 (570)
T 3fmw_A          149 RTEALLAEHAREAGAEIPRGHEVTRLRQDA--EAV-EVTVAGPSGPYPVRARYGVGCDGGRSTVRRLA  213 (570)
T ss_dssp             HHHHHHHHHHHHHTEECCBSCEEEECCBCS--SCE-EEEEEETTEEEEEEESEEEECSCSSCHHHHHT
T ss_pred             HHHHHHHHHHHhCCCEEEeCCEEEEEEEcC--CeE-EEEEEeCCCcEEEEeCEEEEcCCCCchHHHHc
Confidence            467788888888899999999999999877  444 3555  3 5 58999999999999774 3444

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=96.04  E-value=0.016  Score=53.40  Aligned_cols=62  Identities=15%  Similarity=0.177  Sum_probs=50.9

Q ss_pred             eecCCCchhhhHHHHHHHHHcCCeEEcceeeeEEEec----CCCCeEEEEEECCeEEecCEEEEeeChhh
Q 019274           54 WCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYD----EERCCISDVVCGKETYSAGAVVLAVGIST  119 (343)
Q Consensus        54 ~~~gG~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~----~~~g~v~~V~~~g~~~~ad~VV~a~p~~~  119 (343)
                      ||... ...+.+.|.+.+++.|++|+++++|++|..+    +  ++ +.|++++++++||.||+|++...
T Consensus       103 ~p~~~-~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~--~~-~~v~~~~g~i~ad~VVlAtG~~s  168 (401)
T 2gqf_A          103 FCDEG-AEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEK--VR-FVLQVNSTQWQCKNLIVATGGLS  168 (401)
T ss_dssp             EETTC-THHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSS--CC-EEEEETTEEEEESEEEECCCCSS
T ss_pred             ccCCC-HHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCC--Ce-EEEEECCCEEECCEEEECCCCcc
Confidence            45433 4668999999999999999999999999976    4  44 46777766899999999998776

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=95.91  E-value=0.016  Score=49.00  Aligned_cols=55  Identities=15%  Similarity=0.041  Sum_probs=45.9

Q ss_pred             hhhHHHHHHHHHc-CCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhh
Q 019274           62 KIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST  119 (343)
Q Consensus        62 ~l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~  119 (343)
                      .+.+.|.+.+++. |++++ +++|++|..++  +++++|++. |++++||.||.|++...
T Consensus        69 ~~~~~l~~~~~~~~gv~i~-~~~v~~i~~~~--~~v~~v~~~~g~~i~a~~VV~A~G~~s  125 (232)
T 2cul_A           69 AFHARAKYLLEGLRPLHLF-QATATGLLLEG--NRVVGVRTWEGPPARGEKVVLAVGSFL  125 (232)
T ss_dssp             HHHHHHHHHHHTCTTEEEE-ECCEEEEEEET--TEEEEEEETTSCCEECSEEEECCTTCS
T ss_pred             HHHHHHHHHHHcCCCcEEE-EeEEEEEEEeC--CEEEEEEECCCCEEECCEEEECCCCCh
Confidence            5778888889887 89998 67999999877  677788886 56899999999999843

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=95.90  E-value=0.0049  Score=56.89  Aligned_cols=56  Identities=16%  Similarity=0.151  Sum_probs=43.4

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeee---------EEEecCCCCeEEEEEECCeEEecCEEEEeeChhh
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVT---------DFIYDEERCCISDVVCGKETYSAGAVVLAVGIST  119 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~---------~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~  119 (343)
                      ..+.+.|.+.+++.|++|+.+++|+         +|..++  +++ +|++++++++||.||.|+++++
T Consensus       172 ~~l~~~L~~~~~~~Gv~i~~~~~v~~~~g~~~~~~i~~~~--~~v-~v~~~~g~i~a~~VV~A~G~~s  236 (405)
T 3c4n_A          172 GSLALLAAQQAIGQGAGLLLNTRAELVPGGVRLHRLTVTN--THQ-IVVHETRQIRAGVIIVAAGAAG  236 (405)
T ss_dssp             HHHHHHHHHHHHTTTCEEECSCEEEEETTEEEEECBCC----------CBCCEEEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEeccccccccceEeeC--CeE-EEEECCcEEECCEEEECCCccH
Confidence            3488999999999999999999999         888766  555 6777666899999999999985

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=95.88  E-value=0.84  Score=44.57  Aligned_cols=64  Identities=25%  Similarity=0.226  Sum_probs=46.8

Q ss_pred             hhhHHHHHHHHHcCC--eEEcceeeeEEEecCC-CCeEEEEEE-------CC--eEEecCEEEEeeChhhH-HHhhh
Q 019274           62 KIFEPWMDSMRTRGC--EFLDGRRVTDFIYDEE-RCCISDVVC-------GK--ETYSAGAVVLAVGISTL-QELIK  125 (343)
Q Consensus        62 ~l~~~l~~~l~~~G~--~i~~~~~V~~I~~~~~-~g~v~~V~~-------~g--~~~~ad~VV~a~p~~~~-~~Ll~  125 (343)
                      .+.+.|.+.+++.|+  +|+++++|++|..+++ ++..+.|++       +|  .+++||.||.|.+..+. .+.+.
T Consensus       142 ~l~~~L~~~a~~~g~~v~v~~~~~v~~l~~~~~~~~~~v~v~~~~~~~~~~G~~~~i~a~~vVgADG~~S~vR~~lg  218 (639)
T 2dkh_A          142 RVHDHYLERMRNSPSRLEPHYARRVLDVKVDHGAADYPVTVTLERCDAAHAGQIETVQARYVVGCDGARSNVRRAIG  218 (639)
T ss_dssp             HHHHHHHHHHHHSTTCCCCBCSEEEEEEEECTTCSSCCEEEEEEECSGGGTTCEEEEEEEEEEECCCTTCHHHHHTT
T ss_pred             HHHHHHHHHHHhCCCCcEEecCCEEEEEEECCCCCcCCEEEEEEeccccCCCCeEEEEeCEEEECCCcchHHHHHhC
Confidence            477788889999987  9999999999998752 021123432       34  47899999999999874 34543

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=95.80  E-value=0.016  Score=54.21  Aligned_cols=56  Identities=11%  Similarity=0.096  Sum_probs=47.6

Q ss_pred             chhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChh
Q 019274           60 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS  118 (343)
Q Consensus        60 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~  118 (343)
                      ...+.+.+.+.+++.|++|+++++|++|..++  +++ .|.+++++++||.||+|++..
T Consensus       188 d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~--~~v-~v~~~~g~i~aD~Vv~A~G~~  243 (452)
T 3oc4_A          188 DKEMVAEVQKSLEKQAVIFHFEETVLGIEETA--NGI-VLETSEQEISCDSGIFALNLH  243 (452)
T ss_dssp             CHHHHHHHHHHHHTTTEEEEETCCEEEEEECS--SCE-EEEESSCEEEESEEEECSCCB
T ss_pred             CHHHHHHHHHHHHHcCCEEEeCCEEEEEEccC--CeE-EEEECCCEEEeCEEEECcCCC
Confidence            45678889999999999999999999998766  566 677775689999999999864

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=95.65  E-value=0.028  Score=52.30  Aligned_cols=57  Identities=19%  Similarity=0.348  Sum_probs=47.5

Q ss_pred             chhhhHHHHHHHHHcCCeEEcceeeeEEEe--cCCCCeEEEEEEC-CeEEecCEEEEeeChh
Q 019274           60 REKIFEPWMDSMRTRGCEFLDGRRVTDFIY--DEERCCISDVVCG-KETYSAGAVVLAVGIS  118 (343)
Q Consensus        60 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~--~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~  118 (343)
                      ...+.+.+.+.+++.|++|+++++|++|..  ++  ++++.|++. |+++.+|.||++++..
T Consensus       190 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~--~~v~~v~~~~G~~i~~D~Vv~a~G~~  249 (431)
T 1q1r_A          190 APPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQ--QKVTAVLCEDGTRLPADLVIAGIGLI  249 (431)
T ss_dssp             CHHHHHHHHHHHHHHTCEEECSCCEEEEEECTTT--CCEEEEEETTSCEEECSEEEECCCEE
T ss_pred             hHHHHHHHHHHHHhCCeEEEeCCEEEEEEeccCC--CcEEEEEeCCCCEEEcCEEEECCCCC
Confidence            345778888899999999999999999987  44  667678875 6789999999999864

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=95.59  E-value=0.034  Score=52.25  Aligned_cols=58  Identities=19%  Similarity=0.243  Sum_probs=47.5

Q ss_pred             CchhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE-CCeEEecCEEEEeeChhh
Q 019274           59 LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST  119 (343)
Q Consensus        59 ~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~-~g~~~~ad~VV~a~p~~~  119 (343)
                      +...+.+.+.+.+++.|++|+++++|++|..++  +++. |++ +|++++||.||+|++...
T Consensus       200 ~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~--~~v~-v~~~~g~~i~aD~Vv~a~G~~p  258 (472)
T 3iwa_A          200 TSKSLSQMLRHDLEKNDVVVHTGEKVVRLEGEN--GKVA-RVITDKRTLDADLVILAAGVSP  258 (472)
T ss_dssp             SCHHHHHHHHHHHHHTTCEEECSCCEEEEEESS--SBEE-EEEESSCEEECSEEEECSCEEE
T ss_pred             cCHHHHHHHHHHHHhcCCEEEeCCEEEEEEccC--CeEE-EEEeCCCEEEcCEEEECCCCCc
Confidence            345678889999999999999999999998766  6654 554 467899999999998753

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=95.49  E-value=0.024  Score=53.92  Aligned_cols=62  Identities=13%  Similarity=0.104  Sum_probs=46.6

Q ss_pred             hhHHHHHHHHHcC-CeEEcceeeeEEEecCCCCeEEEEEE---CC-----eEEecCEEEEeeChhhHHHhh
Q 019274           63 IFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVC---GK-----ETYSAGAVVLAVGISTLQELI  124 (343)
Q Consensus        63 l~~~l~~~l~~~G-~~i~~~~~V~~I~~~~~~g~v~~V~~---~g-----~~~~ad~VV~a~p~~~~~~Ll  124 (343)
                      ...++.+.++++| ++|++++.|++|..+++++++++|++   +|     .+++|+.||+|+++....+||
T Consensus       223 ~~~~~l~~a~~~~n~~i~~~~~V~~i~~~~~g~~~~gV~~~~~~g~~~~~~~v~A~~VIlaaG~~~s~~lL  293 (504)
T 1n4w_A          223 LDKTYLAAALGTGKVTIQTLHQVKTIRQTKDGGYALTVEQKDTDGKLLATKEISCRYLFLGAGSLGSTELL  293 (504)
T ss_dssp             TTTTHHHHHHHTTSEEEEESEEEEEEEECTTSSEEEEEEEECTTCCEEEEEEEEEEEEEECSHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCcEEEeCCEEEEEEECCCCCEEEEEEEeCCCCccceeEEEeeCEEEEccCCCCCHHHH
Confidence            3455556666676 89999999999999853147889987   34     257899999999998766543

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=95.49  E-value=0.026  Score=54.77  Aligned_cols=58  Identities=14%  Similarity=0.196  Sum_probs=48.1

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE---C-Ce--EEecCEEEEeeChhh
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---G-KE--TYSAGAVVLAVGIST  119 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~---~-g~--~~~ad~VV~a~p~~~  119 (343)
                      ..+++.|.+.+++.|++|+++++|++|..+++ |+|++|.+   . |+  ++.|+.||+|++...
T Consensus       143 ~~l~~~L~~~~~~~gv~i~~~~~v~~L~~~~~-g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGg~~  206 (588)
T 2wdq_A          143 HALLHTLYQQNLKNHTTIFSEWYALDLVKNQD-GAVVGCTALCIETGEVVYFKARATVLATGGAG  206 (588)
T ss_dssp             HHHHHHHHHHHHHTTCEEEETEEEEEEEECTT-SCEEEEEEEETTTCCEEEEEEEEEEECCCCCG
T ss_pred             HHHHHHHHHHHHhCCCEEEeCcEEEEEEECCC-CEEEEEEEEEcCCCeEEEEEcCEEEECCCCCc
Confidence            45888999999999999999999999998632 78888875   2 43  589999999999865

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=95.46  E-value=0.029  Score=55.22  Aligned_cols=57  Identities=14%  Similarity=0.144  Sum_probs=48.3

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE---C-Ce--EEecCEEEEeeChhh
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---G-KE--TYSAGAVVLAVGIST  119 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~---~-g~--~~~ad~VV~a~p~~~  119 (343)
                      ..|++.|.+.+++.|++|+.+++|++|..++  |+|.+|.+   . |+  .+.|+.||+|++...
T Consensus       158 ~~l~~~L~~~a~~~gv~i~~~~~v~~L~~~~--g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~  220 (660)
T 2bs2_A          158 HTMLFAVANECLKLGVSIQDRKEAIALIHQD--GKCYGAVVRDLVTGDIIAYVAKGTLIATGGYG  220 (660)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSEEEEEEEEET--TEEEEEEEEETTTCCEEEEECSEEEECCCCCG
T ss_pred             HHHHHHHHHHHHhCCCEEEECcEEEEEEecC--CEEEEEEEEECCCCcEEEEEcCEEEEccCcch
Confidence            4588999999999999999999999999876  78888765   2 44  489999999999865

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=95.39  E-value=0.043  Score=52.39  Aligned_cols=59  Identities=20%  Similarity=0.250  Sum_probs=47.0

Q ss_pred             chhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeE--EEEEEC-Ce-EEecCEEEEeeChhh
Q 019274           60 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCI--SDVVCG-KE-TYSAGAVVLAVGIST  119 (343)
Q Consensus        60 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v--~~V~~~-g~-~~~ad~VV~a~p~~~  119 (343)
                      ...+.+.+.+.+++.|++|+++++|++|..+++ +++  +.|+++ |+ +++||.||+|++...
T Consensus       254 ~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~-~~v~~~~v~~~~G~~~i~aD~Vv~A~G~~p  316 (523)
T 1mo9_A          254 DNETRAYVLDRMKEQGMEIISGSNVTRIEEDAN-GRVQAVVAMTPNGEMRIETDFVFLGLGEQP  316 (523)
T ss_dssp             SHHHHHHHHHHHHHTTCEEESSCEEEEEEECTT-SBEEEEEEEETTEEEEEECSCEEECCCCEE
T ss_pred             cHHHHHHHHHHHHhCCcEEEECCEEEEEEEcCC-CceEEEEEEECCCcEEEEcCEEEECcCCcc
Confidence            345778899999999999999999999987653 554  346665 45 799999999998643

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=95.39  E-value=0.033  Score=49.06  Aligned_cols=55  Identities=15%  Similarity=0.259  Sum_probs=44.0

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-----C--eEEecCEEEEeeCh
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-----K--ETYSAGAVVLAVGI  117 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-----g--~~~~ad~VV~a~p~  117 (343)
                      ..+.+.+.+.+++.|++|+++++|++|..++  +++.+|++.     |  .++++|.||++++.
T Consensus       184 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~--~~v~~v~~~~~~~~g~~~~i~~D~vv~a~G~  245 (320)
T 1trb_A          184 KILIKRLMDKVENGNIILHTNRTLEEVTGDQ--MGVTGVRLRDTQNSDNIESLDVAGLFVAIGH  245 (320)
T ss_dssp             HHHHHHHHHHHHTSSEEEECSCEEEEEEECS--SSEEEEEEECCTTCCCCEEEECSEEEECSCE
T ss_pred             HHHHHHHHHhcccCCeEEEcCceeEEEEcCC--CceEEEEEEeccCCCceEEEEcCEEEEEeCC
Confidence            3466778888888999999999999998765  566666653     3  47899999999876

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=95.39  E-value=0.028  Score=45.20  Aligned_cols=55  Identities=16%  Similarity=0.106  Sum_probs=45.3

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhh
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST  119 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~  119 (343)
                      ..+.+.+.+.+++.|++++++ +|++|..++  +. +.|+++++++++|.||+|++...
T Consensus        56 ~~~~~~l~~~~~~~gv~v~~~-~v~~i~~~~--~~-~~v~~~~g~i~ad~vI~A~G~~~  110 (180)
T 2ywl_A           56 EELLRRLEAHARRYGAEVRPG-VVKGVRDMG--GV-FEVETEEGVEKAERLLLCTHKDP  110 (180)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEC-CCCEEEECS--SS-EEEECSSCEEEEEEEEECCTTCC
T ss_pred             HHHHHHHHHHHHHcCCEEEeC-EEEEEEEcC--CE-EEEEECCCEEEECEEEECCCCCC
Confidence            457888899999999999999 999998876  33 45776644899999999999753

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=95.39  E-value=0.032  Score=53.61  Aligned_cols=57  Identities=18%  Similarity=0.198  Sum_probs=48.3

Q ss_pred             hhhHHHHHHHHHc-CCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhH
Q 019274           62 KIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTL  120 (343)
Q Consensus        62 ~l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~  120 (343)
                      .+.+.|.+.+++. |++|+++ +|++|..+++ |.+++|++. |++++||.||.|++....
T Consensus       195 ~l~~~L~~~~~~~~Gv~i~~~-~V~~i~~~~~-g~~~~v~~~~G~~i~ad~vI~A~G~~S~  253 (550)
T 2e4g_A          195 LVADFLRRFATEKLGVRHVED-RVEHVQRDAN-GNIESVRTATGRVFDADLFVDCSGFRGL  253 (550)
T ss_dssp             HHHHHHHHHHHHHSCCEEEEC-CEEEEEECTT-SCEEEEEETTSCEEECSEEEECCGGGCC
T ss_pred             HHHHHHHHHHHhcCCcEEEEC-eEeEEEEcCC-CCEEEEEECCCCEEECCEEEECCCCchh
Confidence            4888899999988 9999999 9999988654 666778886 567999999999998764

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=95.38  E-value=0.024  Score=55.31  Aligned_cols=58  Identities=10%  Similarity=0.117  Sum_probs=48.9

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE----CCe--EEecCEEEEeeChhhH
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGISTL  120 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~----~g~--~~~ad~VV~a~p~~~~  120 (343)
                      ..+++.|.+.+++.|++|+.+++|++|..++  |+|.+|.+    +|+  .+.|+.||+|++....
T Consensus       155 ~~l~~~L~~~~~~~gv~i~~~~~v~~Li~~~--g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~~  218 (621)
T 2h88_A          155 HSLLHTLYGRSLRYDTSYFVEYFALDLLMEN--GECRGVIALCIEDGTIHRFRAKNTVIATGGYGR  218 (621)
T ss_dssp             HHHHHHHHHHHTTSCCEEEETEEEEEEEEET--TEEEEEEEEETTTCCEEEEEEEEEEECCCCCGG
T ss_pred             HHHHHHHHHHHHhCCCEEEEceEEEEEEEEC--CEEEEEEEEEcCCCcEEEEEcCeEEECCCcccc
Confidence            3688899999988999999999999999876  88888875    243  6899999999998653

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=95.24  E-value=0.041  Score=52.26  Aligned_cols=58  Identities=21%  Similarity=0.168  Sum_probs=48.3

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhH
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTL  120 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~  120 (343)
                      ..+.+.|.+.+++.|++++.+ +|++|..+++ +.+++|++. |++++||.||.|.+....
T Consensus       173 ~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~-~~~~~v~~~~g~~~~ad~vV~A~G~~S~  231 (511)
T 2weu_A          173 DEVARYLSEYAIARGVRHVVD-DVQHVGQDER-GWISGVHTKQHGEISGDLFVDCTGFRGL  231 (511)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEC-CEEEEEECTT-SCEEEEEESSSCEEECSEEEECCGGGCC
T ss_pred             HHHHHHHHHHHHHCCCEEEEC-eEeEEEEcCC-CCEEEEEECCCCEEEcCEEEECCCcchH
Confidence            357788888888899999999 9999988654 666778876 558999999999999764

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=95.18  E-value=0.035  Score=52.80  Aligned_cols=61  Identities=15%  Similarity=0.142  Sum_probs=46.2

Q ss_pred             hhHHHHHHHHHcC-CeEEcceeeeEEEecCCCC-eEEEEEE---CC-----eEEecCEEEEeeChhhHHHhh
Q 019274           63 IFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERC-CISDVVC---GK-----ETYSAGAVVLAVGISTLQELI  124 (343)
Q Consensus        63 l~~~l~~~l~~~G-~~i~~~~~V~~I~~~~~~g-~v~~V~~---~g-----~~~~ad~VV~a~p~~~~~~Ll  124 (343)
                      ...++...+++.| ++|++++.|++|..+++ + ++++|++   +|     .+++|+.||+|+++..+.+||
T Consensus       228 ~~~~~l~~a~~~~n~~i~~~~~v~~i~~~~~-g~~~~gV~~~~~~g~~~~~~~~~A~~VIlaaGa~~sp~lL  298 (507)
T 1coy_A          228 LDKTYLAQAAATGKLTITTLHRVTKVAPATG-SGYSVTMEQIDEQGNVVATKVVTADRVFFAAGSVGTSKLL  298 (507)
T ss_dssp             TTTTHHHHHHHTTCEEEECSEEEEEEEECSS-SSEEEEEEEECTTSCEEEEEEEEEEEEEECSHHHHHHHHH
T ss_pred             hHHHHHHHHHhcCCcEEEeCCEEEEEEECCC-CCEEEEEEEeCCCCcccccEEEEeCEEEEccCccCCHHHH
Confidence            4455555555665 89999999999999764 4 7888877   34     257899999999998766543

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=95.14  E-value=0.046  Score=47.65  Aligned_cols=56  Identities=16%  Similarity=0.205  Sum_probs=44.5

Q ss_pred             hhhHHHHHHHHH-cCCeEEcceeeeEEEecCCCCeEEEEEEC----------C-----eEEecCEEEEeeChhh
Q 019274           62 KIFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVCG----------K-----ETYSAGAVVLAVGIST  119 (343)
Q Consensus        62 ~l~~~l~~~l~~-~G~~i~~~~~V~~I~~~~~~g~v~~V~~~----------g-----~~~~ad~VV~a~p~~~  119 (343)
                      .+...|.+.+.+ .|++|+++++|++|..++  +++.+|.+.          +     .+++||.||+|++...
T Consensus       120 ~~~~~l~~~~~~~~gv~i~~~~~V~~i~~~~--~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~VV~AtG~~s  191 (284)
T 1rp0_A          120 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKG--NRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDG  191 (284)
T ss_dssp             HHHHHHHHHHHTSTTEEEEETEEEEEEEEET--TEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSS
T ss_pred             HHHHHHHHHHHhcCCCEEEcCcEEEEEEecC--CeEEEEEEeccccccccCccccCceEEEECCEEEECCCCch
Confidence            466677777765 699999999999999877  677777652          1     5789999999999753

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=95.13  E-value=0.03  Score=51.69  Aligned_cols=56  Identities=16%  Similarity=0.222  Sum_probs=46.3

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhh
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST  119 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~  119 (343)
                      ..+.+.+.+.+++.|++|++++.|++|..++   ++.+|++. |++++||.||++++...
T Consensus       185 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~---~~~~v~~~dg~~i~aD~Vv~a~G~~p  241 (410)
T 3ef6_A          185 RRIGAWLRGLLTELGVQVELGTGVVGFSGEG---QLEQVMASDGRSFVADSALICVGAEP  241 (410)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSCCEEEEECSS---SCCEEEETTSCEEECSEEEECSCEEE
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEEEEEeccC---cEEEEEECCCCEEEcCEEEEeeCCee
Confidence            4467788888999999999999999998643   45678885 67899999999998754

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=95.09  E-value=0.038  Score=49.28  Aligned_cols=57  Identities=16%  Similarity=0.031  Sum_probs=47.0

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhh
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST  119 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~  119 (343)
                      ..+.+.+.+.+++.|++++++++|++|..++  +.+.+|+++++++++|.||+|++...
T Consensus        76 ~~~~~~l~~~~~~~~~~~~~~~~v~~i~~~~--~~~~~v~~~~g~~~~d~vV~AtG~~~  132 (357)
T 4a9w_A           76 AEVLAYLAQYEQKYALPVLRPIRVQRVSHFG--ERLRVVARDGRQWLARAVISATGTWG  132 (357)
T ss_dssp             HHHHHHHHHHHHHTTCCEECSCCEEEEEEET--TEEEEEETTSCEEEEEEEEECCCSGG
T ss_pred             HHHHHHHHHHHHHcCCEEEcCCEEEEEEECC--CcEEEEEeCCCEEEeCEEEECCCCCC
Confidence            4577888888889999999999999999877  54322777766899999999999754

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=95.05  E-value=0.032  Score=51.02  Aligned_cols=61  Identities=18%  Similarity=0.156  Sum_probs=49.0

Q ss_pred             hhhHHHHHHHHHc-CCeEEcceeeeEEEecCCCCeEE-EEEEC-CeEEecCEEEEeeChhhH-HHhh
Q 019274           62 KIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCIS-DVVCG-KETYSAGAVVLAVGISTL-QELI  124 (343)
Q Consensus        62 ~l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~~g~v~-~V~~~-g~~~~ad~VV~a~p~~~~-~~Ll  124 (343)
                      .|.+.|.+.+++. |++|+++++|++|..++  ++++ .|++. |++++||.||.|.+.... .+.+
T Consensus       108 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~--~~v~g~v~~~~g~~~~ad~vV~AdG~~s~vr~~l  172 (399)
T 2x3n_A          108 SLRRLVLEKIDGEATVEMLFETRIEAVQRDE--RHAIDQVRLNDGRVLRPRVVVGADGIASYVRRRL  172 (399)
T ss_dssp             HHHHHHHHHHTTCTTEEEECSCCEEEEEECT--TSCEEEEEETTSCEEEEEEEEECCCTTCHHHHHT
T ss_pred             HHHHHHHHHhhhcCCcEEEcCCEEEEEEEcC--CceEEEEEECCCCEEECCEEEECCCCChHHHHHh
Confidence            5778888888887 89999999999999877  4443 57765 568999999999999775 3444

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=95.00  E-value=0.042  Score=51.55  Aligned_cols=57  Identities=18%  Similarity=0.162  Sum_probs=46.5

Q ss_pred             chhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEE-EC-CeEEecCEEEEeeChhh
Q 019274           60 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVV-CG-KETYSAGAVVLAVGIST  119 (343)
Q Consensus        60 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~-~~-g~~~~ad~VV~a~p~~~  119 (343)
                      ...+.+.+.+.+++.|++|+++++|++|..+++ +. ..|+ ++ |+ +++|.||+|++...
T Consensus       210 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~-~~-~~v~~~~~g~-i~aD~Vv~a~G~~p  268 (463)
T 4dna_A          210 DQDMRRGLHAAMEEKGIRILCEDIIQSVSADAD-GR-RVATTMKHGE-IVADQVMLALGRMP  268 (463)
T ss_dssp             CHHHHHHHHHHHHHTTCEEECSCCEEEEEECTT-SC-EEEEESSSCE-EEESEEEECSCEEE
T ss_pred             CHHHHHHHHHHHHHCCCEEECCCEEEEEEEcCC-CE-EEEEEcCCCe-EEeCEEEEeeCccc
Confidence            455788899999999999999999999988763 43 4677 65 55 99999999998743

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=95.00  E-value=0.047  Score=51.71  Aligned_cols=57  Identities=18%  Similarity=0.260  Sum_probs=46.2

Q ss_pred             chhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChh
Q 019274           60 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS  118 (343)
Q Consensus        60 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~  118 (343)
                      ...+.+.+.+.+++.|++|+++++|++|..+++ +. ..|++. |+++++|.||+|++..
T Consensus       234 d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~-~~-~~v~~~~G~~i~~D~vv~a~G~~  291 (495)
T 2wpf_A          234 DETIREEVTKQLTANGIEIMTNENPAKVSLNTD-GS-KHVTFESGKTLDVDVVMMAIGRI  291 (495)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEESCCEEEEEECTT-SC-EEEEETTSCEEEESEEEECSCEE
T ss_pred             CHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCC-ce-EEEEECCCcEEEcCEEEECCCCc
Confidence            345788889999999999999999999987652 33 456665 6689999999999864

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=94.99  E-value=0.038  Score=52.27  Aligned_cols=56  Identities=20%  Similarity=0.356  Sum_probs=46.6

Q ss_pred             chhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChh
Q 019274           60 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS  118 (343)
Q Consensus        60 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~  118 (343)
                      ...+.+.+.+.+++.|++|+++++|++|.. +  +++..|.++++++++|.||+|++..
T Consensus       235 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~-~--~~v~~v~~~g~~i~~D~Vi~a~G~~  290 (490)
T 2bc0_A          235 DRDLTDLMAKNMEEHGIQLAFGETVKEVAG-N--GKVEKIITDKNEYDVDMVILAVGFR  290 (490)
T ss_dssp             CHHHHHHHHHHHHTTTCEEEETCCEEEEEC-S--SSCCEEEESSCEEECSEEEECCCEE
T ss_pred             HHHHHHHHHHHHHhCCeEEEeCCEEEEEEc-C--CcEEEEEECCcEEECCEEEECCCCC
Confidence            455778888999999999999999999985 3  5555677788889999999999864

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=94.96  E-value=0.055  Score=50.75  Aligned_cols=56  Identities=16%  Similarity=0.160  Sum_probs=47.1

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhh
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST  119 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~  119 (343)
                      ..+.+.+.+.+++.|++|+++++|++|..++  +. +.|.++++++++|.||+|++...
T Consensus       216 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~--~~-~~v~~~~~~i~aD~Vv~a~G~~p  271 (467)
T 1zk7_A          216 PAIGEAVTAAFRAEGIEVLEHTQASQVAHMD--GE-FVLTTTHGELRADKLLVATGRTP  271 (467)
T ss_dssp             HHHHHHHHHHHHHTTCEEETTCCEEEEEEET--TE-EEEEETTEEEEESEEEECSCEEE
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEEeC--CE-EEEEECCcEEEcCEEEECCCCCc
Confidence            4578889999999999999999999998765  43 46777777899999999998753

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=94.95  E-value=0.045  Score=51.79  Aligned_cols=58  Identities=14%  Similarity=0.190  Sum_probs=46.6

Q ss_pred             chhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhh
Q 019274           60 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST  119 (343)
Q Consensus        60 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~  119 (343)
                      ...+.+.+.+.+++.|++|+++++|++|..+++ +. ..|++. |+++++|.||+|++...
T Consensus       230 d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~-~~-~~v~~~~G~~i~~D~vv~a~G~~p  288 (490)
T 1fec_A          230 DSELRKQLTEQLRANGINVRTHENPAKVTKNAD-GT-RHVVFESGAEADYDVVMLAIGRVP  288 (490)
T ss_dssp             CHHHHHHHHHHHHHTTEEEEETCCEEEEEECTT-SC-EEEEETTSCEEEESEEEECSCEEE
T ss_pred             CHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCC-CE-EEEEECCCcEEEcCEEEEccCCCc
Confidence            345788889999999999999999999987652 33 456665 56899999999998643

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=94.92  E-value=0.055  Score=50.99  Aligned_cols=57  Identities=11%  Similarity=0.074  Sum_probs=45.7

Q ss_pred             chhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-C-eEEecCEEEEeeCh
Q 019274           60 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-K-ETYSAGAVVLAVGI  117 (343)
Q Consensus        60 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g-~~~~ad~VV~a~p~  117 (343)
                      ...+.+.+.+.+++.|++|+++++|++|..+++ +++..|+++ | +++++|.||+|++.
T Consensus       225 d~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~-~~~~~v~~~~G~~~i~~D~vv~a~G~  283 (479)
T 2hqm_A          225 DECIQNTITDHYVKEGINVHKLSKIVKVEKNVE-TDKLKIHMNDSKSIDDVDELIWTIGR  283 (479)
T ss_dssp             CHHHHHHHHHHHHHHTCEEECSCCEEEEEECC--CCCEEEEETTSCEEEEESEEEECSCE
T ss_pred             CHHHHHHHHHHHHhCCeEEEeCCEEEEEEEcCC-CcEEEEEECCCcEEEEcCEEEECCCC
Confidence            345778888999999999999999999987643 433457765 6 68999999999985

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=94.92  E-value=0.049  Score=51.62  Aligned_cols=57  Identities=12%  Similarity=0.158  Sum_probs=46.5

Q ss_pred             chhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhh
Q 019274           60 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST  119 (343)
Q Consensus        60 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~  119 (343)
                      ...+.+.+.+.+++.|++|+++++|++|..++  +++ .|+++ |++++||.||+|++...
T Consensus       222 d~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~--~~v-~v~~~~g~~i~aD~Vv~a~G~~p  279 (499)
T 1xdi_A          222 DADAALVLEESFAERGVRLFKNARAASVTRTG--AGV-LVTMTDGRTVEGSHALMTIGSVP  279 (499)
T ss_dssp             SHHHHHHHHHHHHHTTCEEETTCCEEEEEECS--SSE-EEEETTSCEEEESEEEECCCEEE
T ss_pred             CHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeC--CEE-EEEECCCcEEEcCEEEECCCCCc
Confidence            34577888999999999999999999998766  444 46665 56899999999998754

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=94.87  E-value=0.058  Score=51.08  Aligned_cols=56  Identities=16%  Similarity=0.157  Sum_probs=45.8

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhh
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST  119 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~  119 (343)
                      ..+.+.+.+.++++|++|+++++|++|..++  +++ .|++. |++++||.||++++...
T Consensus       226 ~~~~~~~~~~l~~~GV~v~~~~~V~~i~~~~--~~~-~v~l~dG~~i~aD~Vv~a~G~~p  282 (493)
T 1m6i_A          226 EYLSNWTMEKVRREGVKVMPNAIVQSVGVSS--GKL-LIKLKDGRKVETDHIVAAVGLEP  282 (493)
T ss_dssp             HHHHHHHHHHHHTTTCEEECSCCEEEEEEET--TEE-EEEETTSCEEEESEEEECCCEEE
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEEEEEEecC--CeE-EEEECCCCEEECCEEEECCCCCc
Confidence            4467788888999999999999999998765  554 57765 67899999999998643

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=94.72  E-value=0.06  Score=49.08  Aligned_cols=56  Identities=16%  Similarity=0.117  Sum_probs=46.2

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhh
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST  119 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~  119 (343)
                      ..+.+.+.+.+++.|++|+++++|++|..++  +. ..|++. |++++||.||+|++...
T Consensus       187 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~--~~-~~v~~~~g~~i~~d~vv~a~G~~p  243 (384)
T 2v3a_A          187 PAAAKAVQAGLEGLGVRFHLGPVLASLKKAG--EG-LEAHLSDGEVIPCDLVVSAVGLRP  243 (384)
T ss_dssp             HHHHHHHHHHHHTTTCEEEESCCEEEEEEET--TE-EEEEETTSCEEEESEEEECSCEEE
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCEEEEEEecC--CE-EEEEECCCCEEECCEEEECcCCCc
Confidence            4577889999999999999999999998765  44 356665 67899999999998744

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=94.68  E-value=0.053  Score=51.17  Aligned_cols=56  Identities=25%  Similarity=0.300  Sum_probs=46.7

Q ss_pred             chhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChh
Q 019274           60 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS  118 (343)
Q Consensus        60 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~  118 (343)
                      ...+.+.+.+.+++.|++|+++++|++|..++  +++ .|++. |++++||.||+|++..
T Consensus       231 ~~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~~--~~v-~v~~~~g~~i~aD~Vi~A~G~~  287 (484)
T 3o0h_A          231 DYDLRQLLNDAMVAKGISIIYEATVSQVQSTE--NCY-NVVLTNGQTICADRVMLATGRV  287 (484)
T ss_dssp             CHHHHHHHHHHHHHHTCEEESSCCEEEEEECS--SSE-EEEETTSCEEEESEEEECCCEE
T ss_pred             CHHHHHHHHHHHHHCCCEEEeCCEEEEEEeeC--CEE-EEEECCCcEEEcCEEEEeeCCC
Confidence            34578888999999999999999999998876  444 57775 5689999999999864

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=94.65  E-value=0.069  Score=51.11  Aligned_cols=58  Identities=17%  Similarity=0.168  Sum_probs=48.2

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhH
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTL  120 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~  120 (343)
                      ..+.+.|.+.+++.|++++.+ +|++|..+++ |.++.|++. |++++||.||.|.+....
T Consensus       165 ~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~-g~~~~v~~~~g~~i~ad~vV~A~G~~s~  223 (538)
T 2aqj_A          165 HLVADFLKRWAVERGVNRVVD-EVVDVRLNNR-GYISNLLTKEGRTLEADLFIDCSGMRGL  223 (538)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEC-CEEEEEECTT-SCEEEEEETTSCEECCSEEEECCGGGCC
T ss_pred             HHHHHHHHHHHHHCCCEEEEe-eEeEEEEcCC-CcEEEEEECCCcEEEeCEEEECCCCchh
Confidence            457888999998899999999 8999988654 666678776 558999999999998764

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=94.60  E-value=0.058  Score=50.77  Aligned_cols=57  Identities=19%  Similarity=0.262  Sum_probs=47.4

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC--CeEEecCEEEEeeChhhH
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KETYSAGAVVLAVGISTL  120 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~--g~~~~ad~VV~a~p~~~~  120 (343)
                      ..+.+.|.+.+++.|++|+.+++| +|..++  ++|.+|.+.  ++++.||.||+|++....
T Consensus       119 ~~l~~~L~~~~~~~gv~i~~~~~v-~l~~~~--~~v~Gv~v~~~~g~~~a~~VVlAtGg~~~  177 (472)
T 2e5v_A          119 REIFNFLLKLAREEGIPIIEDRLV-EIRVKD--GKVTGFVTEKRGLVEDVDKLVLATGGYSY  177 (472)
T ss_dssp             HHHHHHHHHHHHHTTCCEECCCEE-EEEEET--TEEEEEEETTTEEECCCSEEEECCCCCGG
T ss_pred             HHHHHHHHHHHHhCCCEEEECcEE-EEEEeC--CEEEEEEEEeCCCeEEeeeEEECCCCCcc
Confidence            457889999888889999999999 998877  788788763  346789999999998653

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=94.56  E-value=0.1  Score=49.22  Aligned_cols=57  Identities=23%  Similarity=0.273  Sum_probs=47.6

Q ss_pred             chhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhh
Q 019274           60 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST  119 (343)
Q Consensus        60 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~  119 (343)
                      ...+.+.+.+.+++.|++|+++++|++|..+   ++++.|.++++++++|.||+|++...
T Consensus       226 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~---~~v~~v~~~~~~i~~D~vi~a~G~~p  282 (480)
T 3cgb_A          226 DGDMAEYIYKEADKHHIEILTNENVKAFKGN---ERVEAVETDKGTYKADLVLVSVGVKP  282 (480)
T ss_dssp             CHHHHHHHHHHHHHTTCEEECSCCEEEEEES---SBEEEEEETTEEEECSEEEECSCEEE
T ss_pred             CHHHHHHHHHHHHHcCcEEEcCCEEEEEEcC---CcEEEEEECCCEEEcCEEEECcCCCc
Confidence            3457788899999999999999999999754   45667778877899999999998653

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=94.52  E-value=0.062  Score=52.26  Aligned_cols=55  Identities=18%  Similarity=0.152  Sum_probs=46.7

Q ss_pred             hhhHHHHHHHHH-cCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhh
Q 019274           62 KIFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST  119 (343)
Q Consensus        62 ~l~~~l~~~l~~-~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~  119 (343)
                      .+.+.|.+.+++ .|++| +++.|++|..++  ++|++|.+. |.++.||.||+|++...
T Consensus       124 ~~~~~L~~~Le~~~GVeI-~~~~Vt~L~~e~--g~V~GV~t~dG~~i~AdaVVLATG~~s  180 (637)
T 2zxi_A          124 RYREYMKKVCENQENLYI-KQEEVVDIIVKN--NQVVGVRTNLGVEYKTKAVVVTTGTFL  180 (637)
T ss_dssp             HHHHHHHHHHHTCTTEEE-EESCEEEEEESS--SBEEEEEETTSCEEECSEEEECCTTCB
T ss_pred             HHHHHHHHHHHhCCCCEE-EEeEEEEEEecC--CEEEEEEECCCcEEEeCEEEEccCCCc
Confidence            477888888888 48999 678999999887  778889886 66899999999999864

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=94.50  E-value=0.074  Score=49.67  Aligned_cols=57  Identities=11%  Similarity=0.151  Sum_probs=45.9

Q ss_pred             chhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChh
Q 019274           60 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS  118 (343)
Q Consensus        60 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~  118 (343)
                      ...+.+.+.+.+++.|++|+++++|++|..+++ +. ..|++. |+++++|.||+|++..
T Consensus       207 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~-~~-~~v~~~~g~~i~~D~vv~a~G~~  264 (450)
T 1ges_A          207 DPMISETLVEVMNAEGPQLHTNAIPKAVVKNTD-GS-LTLELEDGRSETVDCLIWAIGRE  264 (450)
T ss_dssp             CHHHHHHHHHHHHHHSCEEECSCCEEEEEECTT-SC-EEEEETTSCEEEESEEEECSCEE
T ss_pred             hHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCC-cE-EEEEECCCcEEEcCEEEECCCCC
Confidence            345778888999999999999999999987653 43 356665 6689999999999764

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=94.47  E-value=0.068  Score=51.99  Aligned_cols=58  Identities=19%  Similarity=0.181  Sum_probs=48.3

Q ss_pred             hhhhHHHHHHHHHcC-CeEEcceeeeEEEecCCCCeEEEEEE---C-Ce--EEecCEEEEeeChhhH
Q 019274           61 EKIFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVC---G-KE--TYSAGAVVLAVGISTL  120 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G-~~i~~~~~V~~I~~~~~~g~v~~V~~---~-g~--~~~ad~VV~a~p~~~~  120 (343)
                      ..+.+.|.+.+++.| ++|+++++|++|..++  ++|++|..   . |+  ++.|+.||+|++....
T Consensus       134 ~~l~~~L~~~~~~~gnv~i~~~~~v~~l~~~~--g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~s~  198 (602)
T 1kf6_A          134 FHMLHTLFQTSLQFPQIQRFDEHFVLDILVDD--GHVRGLVAMNMMEGTLVQIRANAVVMATGGAGR  198 (602)
T ss_dssp             HHHHHHHHHHHTTCTTEEEEETEEEEEEEEET--TEEEEEEEEETTTTEEEEEECSCEEECCCCCGG
T ss_pred             HHHHHHHHHHHHhCCCcEEEeCCEEEEEEEeC--CEEEEEEEEEcCCCcEEEEEcCeEEECCCCCcc
Confidence            358889999988888 9999999999999876  78877753   2 55  6899999999998653

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=94.26  E-value=0.069  Score=52.10  Aligned_cols=55  Identities=20%  Similarity=0.158  Sum_probs=46.5

Q ss_pred             hhhHHHHHHHHH-cCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhh
Q 019274           62 KIFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST  119 (343)
Q Consensus        62 ~l~~~l~~~l~~-~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~  119 (343)
                      .+.+.|.+.+++ .|++| ++++|++|..++  ++|++|.+. |.+++||.||+|++...
T Consensus       125 ~~~~~L~e~Le~~~GV~I-~~~~V~~L~~e~--g~V~GV~t~dG~~I~Ad~VVLATGt~s  181 (651)
T 3ces_A          125 LYRQAVRTALENQPNLMI-FQQAVEDLIVEN--DRVVGAVTQMGLKFRAKAVVLTVGTFL  181 (651)
T ss_dssp             HHHHHHHHHHHTCTTEEE-EECCEEEEEESS--SBEEEEEETTSEEEEEEEEEECCSTTT
T ss_pred             HHHHHHHHHHHhCCCCEE-EEEEEEEEEecC--CEEEEEEECCCCEEECCEEEEcCCCCc
Confidence            477888888888 59999 678999999877  778889886 66899999999999864

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=94.22  E-value=0.093  Score=46.38  Aligned_cols=52  Identities=10%  Similarity=0.017  Sum_probs=40.5

Q ss_pred             hHHHHHHHHHc-CCeEEcceeeeEEEecCCCCeEEEEEEC----C--eEEecCEEEEeeCh
Q 019274           64 FEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCG----K--ETYSAGAVVLAVGI  117 (343)
Q Consensus        64 ~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~~g~v~~V~~~----g--~~~~ad~VV~a~p~  117 (343)
                      .+.+.+.+.+. |++|+++++|.+|..++  +++.+|++.    |  .++++|.||++++.
T Consensus       211 ~~~~~~~l~~~~gv~i~~~~~v~~i~~~~--~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~  269 (338)
T 3itj_A          211 STIMQKRAEKNEKIEILYNTVALEAKGDG--KLLNALRIKNTKKNEETDLPVSGLFYAIGH  269 (338)
T ss_dssp             CHHHHHHHHHCTTEEEECSEEEEEEEESS--SSEEEEEEEETTTTEEEEEECSEEEECSCE
T ss_pred             CHHHHHHHHhcCCeEEeecceeEEEEccc--CcEEEEEEEECCCCceEEEEeCEEEEEeCC
Confidence            45666677665 99999999999998876  556666653    2  47899999999886

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=94.20  E-value=0.088  Score=47.30  Aligned_cols=55  Identities=11%  Similarity=0.046  Sum_probs=44.4

Q ss_pred             hhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE---CC--eEEecCEEEEeeChh
Q 019274           62 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---GK--ETYSAGAVVLAVGIS  118 (343)
Q Consensus        62 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~---~g--~~~~ad~VV~a~p~~  118 (343)
                      .+.+.|.+.+++.|++|+++++|++|..++  +++.+|++   +|  .++++|.||++++..
T Consensus       203 ~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~--~~v~~v~~~~~~g~~~~i~~D~vi~a~G~~  262 (360)
T 3ab1_A          203 KTAHEVERARANGTIDVYLETEVASIEESN--GVLTRVHLRSSDGSKWTVEADRLLILIGFK  262 (360)
T ss_dssp             HHHHSSHHHHHHTSEEEESSEEEEEEEEET--TEEEEEEEEETTCCEEEEECSEEEECCCBC
T ss_pred             HHHHHHHHHhhcCceEEEcCcCHHHhccCC--CceEEEEEEecCCCeEEEeCCEEEECCCCC
Confidence            366777788888899999999999998876  66666766   45  478999999999853

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=94.13  E-value=0.086  Score=49.24  Aligned_cols=57  Identities=21%  Similarity=0.203  Sum_probs=46.6

Q ss_pred             chhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhh
Q 019274           60 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST  119 (343)
Q Consensus        60 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~  119 (343)
                      ...+.+.+.+.+++.|++|+++++|++|..++  +.+ .+++. ++++++|.||+|++...
T Consensus       207 ~~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~~--~~v-~v~~~~g~~i~~D~vv~A~G~~p  264 (455)
T 2yqu_A          207 DLEVSRAAERVFKKQGLTIRTGVRVTAVVPEA--KGA-RVELEGGEVLEADRVLVAVGRRP  264 (455)
T ss_dssp             CHHHHHHHHHHHHHHTCEEECSCCEEEEEEET--TEE-EEEETTSCEEEESEEEECSCEEE
T ss_pred             CHHHHHHHHHHHHHCCCEEEECCEEEEEEEeC--CEE-EEEECCCeEEEcCEEEECcCCCc
Confidence            35578889999999999999999999998766  443 46664 67899999999998754

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=94.13  E-value=0.075  Score=49.50  Aligned_cols=57  Identities=25%  Similarity=0.383  Sum_probs=46.7

Q ss_pred             chhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhh
Q 019274           60 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST  119 (343)
Q Consensus        60 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~  119 (343)
                      ...+.+.+.+.+++.|++|+++++|++|..+   ++++.|.++++++++|.||+|++...
T Consensus       190 ~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~---~~v~~v~~~~~~i~~d~vi~a~G~~p  246 (447)
T 1nhp_A          190 DKEFTDVLTEEMEANNITIATGETVERYEGD---GRVQKVVTDKNAYDADLVVVAVGVRP  246 (447)
T ss_dssp             CHHHHHHHHHHHHTTTEEEEESCCEEEEECS---SBCCEEEESSCEEECSEEEECSCEEE
T ss_pred             CHHHHHHHHHHHHhCCCEEEcCCEEEEEEcc---CcEEEEEECCCEEECCEEEECcCCCC
Confidence            3457788889999999999999999999854   34556777777899999999998643

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=94.03  E-value=0.06  Score=51.61  Aligned_cols=58  Identities=19%  Similarity=0.223  Sum_probs=44.0

Q ss_pred             hhhhHHHHHHHHH-cCCeEEcceeeeEEEecCCCC------eEEEEEE----CCe--EEecCEEEEeeChhh
Q 019274           61 EKIFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERC------CISDVVC----GKE--TYSAGAVVLAVGIST  119 (343)
Q Consensus        61 ~~l~~~l~~~l~~-~G~~i~~~~~V~~I~~~~~~g------~v~~V~~----~g~--~~~ad~VV~a~p~~~  119 (343)
                      ..+.+.|.+.+++ .|++|+++++|++|..+++ +      +|++|.+    +|+  ++.|+.||+|++...
T Consensus       138 ~~l~~~L~~~~~~~~gv~i~~~~~v~~L~~~~~-g~~~~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~  208 (540)
T 1chu_A          138 REVETTLVSKALNHPNIRVLERTNAVDLIVSDK-IGLPGTRRVVGAWVWNRNKETVETCHAKAVVLATGGAS  208 (540)
T ss_dssp             ----CCCHHHHHHCTTEEEECSEEEEEEEEGGG-TTCCSSCBEEEEEEEETTTTEEEEEECSEEEECCCCCG
T ss_pred             HHHHHHHHHHHHcCCCCEEEeCcEEEEEEEcCC-CCcccCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCcc
Confidence            3577788888888 6999999999999998332 5      7877766    254  689999999999865

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=93.97  E-value=0.12  Score=49.24  Aligned_cols=58  Identities=14%  Similarity=0.206  Sum_probs=47.0

Q ss_pred             hhhhHHHHHHHHH-cCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhH
Q 019274           61 EKIFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTL  120 (343)
Q Consensus        61 ~~l~~~l~~~l~~-~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~  120 (343)
                      ..+.+.|.+.+++ .|++++.+ +|++|..+++ +.++.|++. |++++||.||.|.+....
T Consensus       175 ~~l~~~L~~~a~~~~Gv~i~~~-~v~~i~~~~~-g~~~~v~~~~g~~i~ad~vV~AdG~~S~  234 (526)
T 2pyx_A          175 AKFSQLLTEHCTQKLGVTHIRD-HVSQIINNQH-GDIEKLITKQNGEISGQLFIDCTGAKSL  234 (526)
T ss_dssp             HHHHHHHHHHHHHTSCCEEEEC-CEEEEEECTT-SCEEEEEESSSCEEECSEEEECSGGGCC
T ss_pred             HHHHHHHHHHHHhcCCCEEEEe-EEEEEEecCC-CcEEEEEECCCCEEEcCEEEECCCcchH
Confidence            3477888888888 89999999 5999988754 655677775 567999999999998764

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=93.95  E-value=0.14  Score=44.96  Aligned_cols=51  Identities=18%  Similarity=0.352  Sum_probs=39.8

Q ss_pred             HHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE----CCe--EEecCEEEEeeCh
Q 019274           65 EPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGI  117 (343)
Q Consensus        65 ~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~----~g~--~~~ad~VV~a~p~  117 (343)
                      ..+.+.+++.|++|+++++|++|..++  +++.+|++    +|+  ++.+|.||++++.
T Consensus       194 ~~l~~~l~~~gv~i~~~~~v~~i~~~~--~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~  250 (319)
T 3cty_A          194 NAYVQEIKKRNIPYIMNAQVTEIVGDG--KKVTGVKYKDRTTGEEKLIETDGVFIYVGL  250 (319)
T ss_dssp             HHHHHHHHHTTCCEECSEEEEEEEESS--SSEEEEEEEETTTCCEEEECCSEEEECCCE
T ss_pred             HHHHHHHhcCCcEEEcCCeEEEEecCC--ceEEEEEEEEcCCCceEEEecCEEEEeeCC
Confidence            456777788999999999999998765  55656655    343  6899999998865

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=93.92  E-value=0.093  Score=47.16  Aligned_cols=55  Identities=18%  Similarity=0.166  Sum_probs=44.3

Q ss_pred             hhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhh
Q 019274           62 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST  119 (343)
Q Consensus        62 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~  119 (343)
                      .+.+.+.+.+++.|++|+++++|++|..++  +. +.|.+.+++++||+||+|++...
T Consensus        89 ~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~--~~-~~v~~~~g~~~~d~vVlAtG~~~  143 (369)
T 3d1c_A           89 TYAEYLQVVANHYELNIFENTVVTNISADD--AY-YTIATTTETYHADYIFVATGDYN  143 (369)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCEEEEEECS--SS-EEEEESSCCEEEEEEEECCCSTT
T ss_pred             HHHHHHHHHHHHcCCeEEeCCEEEEEEECC--Ce-EEEEeCCCEEEeCEEEECCCCCC
Confidence            356677777888899999999999999876  33 45777655789999999999864

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=93.81  E-value=0.13  Score=48.75  Aligned_cols=57  Identities=12%  Similarity=0.103  Sum_probs=45.7

Q ss_pred             chhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeE-EecCEEEEeeChh
Q 019274           60 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KET-YSAGAVVLAVGIS  118 (343)
Q Consensus        60 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~-~~ad~VV~a~p~~  118 (343)
                      ...+.+.+.+.+++.|++|+++++|++|..+++ +. ..|+++ |++ +++|.||++++..
T Consensus       216 d~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~-~~-~~v~~~~g~~~~~~D~vi~a~G~~  274 (500)
T 1onf_A          216 DESVINVLENDMKKNNINIVTFADVVEIKKVSD-KN-LSIHLSDGRIYEHFDHVIYCVGRS  274 (500)
T ss_dssp             CHHHHHHHHHHHHHTTCEEECSCCEEEEEESST-TC-EEEEETTSCEEEEESEEEECCCBC
T ss_pred             chhhHHHHHHHHHhCCCEEEECCEEEEEEEcCC-ce-EEEEECCCcEEEECCEEEECCCCC
Confidence            355778889999999999999999999987653 43 356665 566 8999999999864

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=93.71  E-value=0.16  Score=47.59  Aligned_cols=56  Identities=18%  Similarity=0.130  Sum_probs=45.5

Q ss_pred             chhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-Ce-EEecCEEEEeeChh
Q 019274           60 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KE-TYSAGAVVLAVGIS  118 (343)
Q Consensus        60 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~-~~~ad~VV~a~p~~  118 (343)
                      ...+.+.+.+.+++.|++|+++++|++|..++  +. ..|+++ |+ ++++|.||+|++..
T Consensus       206 ~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~--~~-~~v~~~~G~~~i~~D~vv~a~G~~  263 (463)
T 2r9z_A          206 DPLLSATLAENMHAQGIETHLEFAVAALERDA--QG-TTLVAQDGTRLEGFDSVIWAVGRA  263 (463)
T ss_dssp             CHHHHHHHHHHHHHTTCEEESSCCEEEEEEET--TE-EEEEETTCCEEEEESEEEECSCEE
T ss_pred             CHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeC--Ce-EEEEEeCCcEEEEcCEEEECCCCC
Confidence            34577888889999999999999999998765  33 456665 66 79999999999864

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=93.55  E-value=0.18  Score=45.93  Aligned_cols=60  Identities=12%  Similarity=0.042  Sum_probs=36.1

Q ss_pred             eeEeecCCCchhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeC
Q 019274           51 DLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVG  116 (343)
Q Consensus        51 ~~~~~~gG~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p  116 (343)
                      .+.-+.|| ++.|+++|++.+   +.+|++|++|++|...++ | |..+..+......-+|.+.+-
T Consensus       311 ~~~~i~GG-~~~l~~~l~~~l---~~~i~l~~~V~~I~~~~~-g-v~v~~~~~~~~~g~~~~~~~~  370 (376)
T 2e1m_A          311 TYWEIEGG-SRMLPETLAKDL---RDQIVMGQRMVRLEYYDP-G-RDGHHGELTGPGGPAVAIQTV  370 (376)
T ss_dssp             CEEEETTC-TTHHHHHHHHHG---GGTEECSEEEEEEEECCC-C--------------CCEEEEEE
T ss_pred             ceEEECCc-HHHHHHHHHHhc---CCcEEecCeEEEEEECCC-c-eEEEeCCCcCCCCCeeEEEec
Confidence            34456899 467999999887   568999999999998774 4 322222212233455666553

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=93.55  E-value=0.16  Score=45.99  Aligned_cols=57  Identities=14%  Similarity=0.145  Sum_probs=46.1

Q ss_pred             hhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhH-HHhh
Q 019274           62 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTL-QELI  124 (343)
Q Consensus        62 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~-~~Ll  124 (343)
                      .|.+.|.+.+++.|++|+++++|++|.. +  +   .|++. |++++||.||.|.+.... .+.+
T Consensus       108 ~l~~~L~~~~~~~gv~i~~~~~v~~i~~-~--~---~v~~~~g~~~~ad~vV~AdG~~s~vr~~l  166 (379)
T 3alj_A          108 HLHDALVNRARALGVDISVNSEAVAADP-V--G---RLTLQTGEVLEADLIVGADGVGSKVRDSI  166 (379)
T ss_dssp             HHHHHHHHHHHHTTCEEESSCCEEEEET-T--T---EEEETTSCEEECSEEEECCCTTCHHHHHH
T ss_pred             HHHHHHHHHHHhcCCEEEeCCEEEEEEe-C--C---EEEECCCCEEEcCEEEECCCccHHHHHHh
Confidence            4678888899889999999999999987 4  6   35555 668999999999999764 3444

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=93.48  E-value=0.19  Score=47.14  Aligned_cols=56  Identities=20%  Similarity=0.220  Sum_probs=44.5

Q ss_pred             chhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-C---eEEecCEEEEeeChh
Q 019274           60 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-K---ETYSAGAVVLAVGIS  118 (343)
Q Consensus        60 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g---~~~~ad~VV~a~p~~  118 (343)
                      ...+.+.+.+.+++.|++|+++++|++|..++  +.+. |++. +   .++++|.||++++..
T Consensus       220 ~~~~~~~l~~~l~~~Gv~v~~~~~v~~i~~~~--~~~~-v~~~~~~g~~~~~~D~vi~a~G~~  279 (476)
T 3lad_A          220 DEQVAKEAQKILTKQGLKILLGARVTGTEVKN--KQVT-VKFVDAEGEKSQAFDKLIVAVGRR  279 (476)
T ss_dssp             CHHHHHHHHHHHHHTTEEEEETCEEEEEEECS--SCEE-EEEESSSEEEEEEESEEEECSCEE
T ss_pred             CHHHHHHHHHHHHhCCCEEEECCEEEEEEEcC--CEEE-EEEEeCCCcEEEECCEEEEeeCCc
Confidence            45578888899999999999999999998876  4443 4442 2   578999999999864

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=93.47  E-value=0.15  Score=49.92  Aligned_cols=57  Identities=19%  Similarity=0.260  Sum_probs=47.1

Q ss_pred             hhhhHHHHHHHHHc-CC-eEEcceeeeEEEecCCCC---eEEEEEE---C-Ce--EEecCEEEEeeChhh
Q 019274           61 EKIFEPWMDSMRTR-GC-EFLDGRRVTDFIYDEERC---CISDVVC---G-KE--TYSAGAVVLAVGIST  119 (343)
Q Consensus        61 ~~l~~~l~~~l~~~-G~-~i~~~~~V~~I~~~~~~g---~v~~V~~---~-g~--~~~ad~VV~a~p~~~  119 (343)
                      ..+.+.|.+.+++. |+ +|+.+++|++|..++  +   +|++|..   . |+  .+.|+.||+|++...
T Consensus       151 ~~~~~~l~~~~~~~~gv~~i~~~~~v~~L~~~~--~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGG~~  218 (643)
T 1jnr_A          151 ESYKPIIAEAAKMAVGEENIYERVFIFELLKDN--NDPNAVAGAVGFSVREPKFYVFKAKAVILATGGAT  218 (643)
T ss_dssp             TTHHHHHHHHHHHHHCGGGEECSEEEEEEEECT--TCTTBEEEEEEEESSSSCEEEEECSEEEECCCCBC
T ss_pred             HHHHHHHHHHHHhcCCCcEEEecCEEEEEEEcC--CccceeEEEEEEEecCCcEEEEEcCEEEECCCccc
Confidence            35778888888887 99 999999999999876  6   8888864   2 43  689999999998765

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=93.47  E-value=0.12  Score=45.43  Aligned_cols=56  Identities=13%  Similarity=0.138  Sum_probs=46.1

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChh
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS  118 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~  118 (343)
                      ..+.+.+.+.+++.|.+++++++|++|..+++ +. +.|.++++++.+|+||+|++..
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~-~~v~~~~g~~~~d~vVlAtG~~  122 (332)
T 3lzw_A           67 QELINNLKEQMAKFDQTICLEQAVESVEKQAD-GV-FKLVTNEETHYSKTVIITAGNG  122 (332)
T ss_dssp             HHHHHHHHHHHTTSCCEEECSCCEEEEEECTT-SC-EEEEESSEEEEEEEEEECCTTS
T ss_pred             HHHHHHHHHHHHHhCCcEEccCEEEEEEECCC-Cc-EEEEECCCEEEeCEEEECCCCC
Confidence            45778888888888999999999999998763 33 5677876669999999999983

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=93.44  E-value=0.18  Score=47.25  Aligned_cols=57  Identities=18%  Similarity=0.258  Sum_probs=44.6

Q ss_pred             chhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE------CCeEEecCEEEEeeChh
Q 019274           60 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC------GKETYSAGAVVLAVGIS  118 (343)
Q Consensus        60 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~------~g~~~~ad~VV~a~p~~  118 (343)
                      ...+.+.+.+.+++.|++|+++++|++|..+++ +.+ .|++      +++++++|.||++++..
T Consensus       219 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~-~~~-~v~~~~~~~~~~~~i~~D~vv~a~G~~  281 (474)
T 1zmd_A          219 DMEISKNFQRILQKQGFKFKLNTKVTGATKKSD-GKI-DVSIEAASGGKAEVITCDVLLVCIGRR  281 (474)
T ss_dssp             CHHHHHHHHHHHHHTTCEEECSEEEEEEEECTT-SCE-EEEEEETTSCCCEEEEESEEEECSCEE
T ss_pred             CHHHHHHHHHHHHHCCCEEEeCceEEEEEEcCC-ceE-EEEEEecCCCCceEEEcCEEEECcCCC
Confidence            455778888999999999999999999987662 323 3442      24689999999999864

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=93.27  E-value=0.17  Score=48.65  Aligned_cols=57  Identities=14%  Similarity=0.300  Sum_probs=44.8

Q ss_pred             chhhhHHHHHHHHHcCCeEEcceeeeEEEec------------------CCCCeEEEEEEC-CeEEecCEEEEeeChh
Q 019274           60 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYD------------------EERCCISDVVCG-KETYSAGAVVLAVGIS  118 (343)
Q Consensus        60 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~------------------~~~g~v~~V~~~-g~~~~ad~VV~a~p~~  118 (343)
                      ...+.+.+.+.+++.|+++++++.|++|..+                  .+ +++. +.+. |++++||.||+|++..
T Consensus       191 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~-v~~~~g~~i~~D~vi~a~G~~  266 (565)
T 3ntd_A          191 DREMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIK-GHLS-LTLSNGELLETDLLIMAIGVR  266 (565)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEETCCEEEEEEECCCCCCCGGGTCCCTTCCTT-CEEE-EEETTSCEEEESEEEECSCEE
T ss_pred             CHHHHHHHHHHHHHCCCEEEeCCeEEEEeccccccccccccccccccccCC-CcEE-EEEcCCCEEEcCEEEECcCCc
Confidence            3457788888899999999999999999873                  22 5543 4444 6789999999999864

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=93.21  E-value=0.19  Score=46.20  Aligned_cols=52  Identities=17%  Similarity=0.195  Sum_probs=43.0

Q ss_pred             chhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChh
Q 019274           60 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS  118 (343)
Q Consensus        60 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~  118 (343)
                      ...+.+.+.+.+++.|++|+++++|++|.  +  +   .|++. |+++++|.||++++..
T Consensus       186 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~--~--~---~v~~~~g~~i~~D~vi~a~G~~  238 (408)
T 2gqw_A          186 PATLADFVARYHAAQGVDLRFERSVTGSV--D--G---VVLLDDGTRIAADMVVVGIGVL  238 (408)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEESCCEEEEE--T--T---EEEETTSCEEECSEEEECSCEE
T ss_pred             CHHHHHHHHHHHHHcCcEEEeCCEEEEEE--C--C---EEEECCCCEEEcCEEEECcCCC
Confidence            34577888889999999999999999998  4  5   35554 6789999999999864

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=93.21  E-value=0.17  Score=44.18  Aligned_cols=49  Identities=12%  Similarity=0.163  Sum_probs=38.2

Q ss_pred             HHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC---Ce--EEecCEEEEeeCh
Q 019274           67 WMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG---KE--TYSAGAVVLAVGI  117 (343)
Q Consensus        67 l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~---g~--~~~ad~VV~a~p~  117 (343)
                      +.+.+++.|++++++++|.+|..++  +++.+|++.   |+  ++++|.||++++.
T Consensus       189 ~~~~~~~~gv~~~~~~~v~~i~~~~--~~~~~v~~~~~~g~~~~~~~D~vv~a~G~  242 (315)
T 3r9u_A          189 VEKVKKNEKIELITSASVDEVYGDK--MGVAGVKVKLKDGSIRDLNVPGIFTFVGL  242 (315)
T ss_dssp             HHHHHHCTTEEEECSCEEEEEEEET--TEEEEEEEECTTSCEEEECCSCEEECSCE
T ss_pred             HHHHHhcCCeEEEeCcEEEEEEcCC--CcEEEEEEEcCCCCeEEeecCeEEEEEcC
Confidence            3444567899999999999998776  677667653   43  7899999999885

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=93.19  E-value=0.28  Score=46.98  Aligned_cols=79  Identities=14%  Similarity=0.141  Sum_probs=49.5

Q ss_pred             HHHHHHHHhhhcccCCCCceeeeEEEecCCCccc-cCCCCCCCCCCCCC-CCCCeEEeeccccCCCCCccchHHHHHHHH
Q 019274          214 VAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTH-FFPGSYKYMMRGFT-SFPNLFMAGDWITTRHGSWSQERSYVTGLE  291 (343)
Q Consensus       214 ~~~~~~~L~~~~p~~~~~~~~~~~~~r~~~~~~~-~~~g~~~~~p~~~~-~~~~L~laGd~~~~g~~~~~~ega~~Sg~~  291 (343)
                      +.+.+..+.+.+|++...+.+-+-+- .+.+-|. ...+     ...++ .++|||.|||.  .|+. +++..|..+|..
T Consensus       463 l~e~~~~~~~~~~g~~~~~~~l~g~e-~~~ssp~ri~~~-----~~~~~~~~~gly~~Geg--aG~a-~gi~~Aa~~G~~  533 (549)
T 3nlc_A          463 IREAIPAFDRKIKGFASEDGLLTGVE-TRTSSPVCIKRG-----KDFQSVNLKGFYPAGEG--AGYA-GGILSAGIDGIK  533 (549)
T ss_dssp             HHHHHHHHHTTSTTTTCTTCEEEEEE-CCSSCSEECCCT-----TTTSCTTCBTEEECHHH--HTSC-CSHHHHHHHHHH
T ss_pred             HHHHHHHhhccCcCCCCCCcEEEEEe-eccCCceeEEEC-----CCceECCcCCEEEcccc--CChh-hHHHHHHHHHHH
Confidence            34456777777898854222211111 2222111 1111     22334 68999999999  4777 688999999999


Q ss_pred             HHHHHHHHhC
Q 019274          292 AANRVVDYLG  301 (343)
Q Consensus       292 aA~~il~~~~  301 (343)
                      ||+.|++.+.
T Consensus       534 ~a~~i~~~~~  543 (549)
T 3nlc_A          534 VAEAVARDIV  543 (549)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhh
Confidence            9999998764

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=93.15  E-value=0.083  Score=50.09  Aligned_cols=60  Identities=12%  Similarity=0.029  Sum_probs=45.4

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE----CC--eEEecCEEEEeeChhhH
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GK--ETYSAGAVVLAVGISTL  120 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~----~g--~~~~ad~VV~a~p~~~~  120 (343)
                      ..+.+.|.+.+++.|++|+++++|++|..+++++..+.|++    +|  .+++||.||.|++....
T Consensus       166 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~v~~~~~~~g~~~~i~ad~VV~A~G~~S~  231 (497)
T 2bry_A          166 RQLQLLLLKVALLLGVEIHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQLASYEFDVLISAAGGKFV  231 (497)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCEEEEEECCCSTTCCBEEEEESCCCHHHHTCCBSEEEECCCTTCC
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEecCCCCEEEEEEEECCCCCEEEEEcCEEEECCCCCcc
Confidence            34667888888889999999999999987521033356666    34  36899999999998764

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=93.13  E-value=0.31  Score=45.68  Aligned_cols=58  Identities=14%  Similarity=0.101  Sum_probs=45.0

Q ss_pred             chhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECC--------eEEecCEEEEeeChh
Q 019274           60 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGK--------ETYSAGAVVLAVGIS  118 (343)
Q Consensus        60 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g--------~~~~ad~VV~a~p~~  118 (343)
                      ...+.+.+.+.+++.|++|++++.|++|..+++ +....|.+.+        .++++|.||++++..
T Consensus       227 d~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~-~~~~~v~~~~~~~g~~~g~~~~~D~vi~a~G~~  292 (478)
T 3dk9_A          227 DSMISTNCTEELENAGVEVLKFSQVKEVKKTLS-GLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRV  292 (478)
T ss_dssp             CHHHHHHHHHHHHHTTCEEETTEEEEEEEECSS-SEEEEEEECCTTSCCEEEEEEEESEEEECSCEE
T ss_pred             CHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCC-CcEEEEEEccCCCCcccceEEEcCEEEEeeccc
Confidence            355778888999999999999999999987653 5223455542        578999999999864

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=93.08  E-value=0.29  Score=43.23  Aligned_cols=53  Identities=15%  Similarity=0.085  Sum_probs=41.5

Q ss_pred             hhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE----CC--eEEecCEEEEeeCh
Q 019274           62 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GK--ETYSAGAVVLAVGI  117 (343)
Q Consensus        62 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~----~g--~~~~ad~VV~a~p~  117 (343)
                      .+.+.+.+.+++.|+++++++.|.+|..+   +++.+|++    +|  .++++|.||++++.
T Consensus       192 ~~~~~l~~~l~~~gv~v~~~~~v~~i~~~---~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~  250 (335)
T 2zbw_A          192 ASVKELMKAHEEGRLEVLTPYELRRVEGD---ERVRWAVVFHNQTQEELALEVDAVLILAGY  250 (335)
T ss_dssp             HHHHHHHHHHHTTSSEEETTEEEEEEEES---SSEEEEEEEETTTCCEEEEECSEEEECCCE
T ss_pred             HHHHHHHhccccCCeEEecCCcceeEccC---CCeeEEEEEECCCCceEEEecCEEEEeecC
Confidence            35677778888889999999999999874   34455655    45  47899999999886

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=93.04  E-value=0.25  Score=46.21  Aligned_cols=56  Identities=13%  Similarity=0.123  Sum_probs=44.6

Q ss_pred             chhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE--C--Ce--EEecCEEEEeeChh
Q 019274           60 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--G--KE--TYSAGAVVLAVGIS  118 (343)
Q Consensus        60 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~--~--g~--~~~ad~VV~a~p~~  118 (343)
                      ...+.+.+.+.+++.|++|+++++|++|..++  +.+ .|++  +  |+  ++++|.||+|++..
T Consensus       209 ~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~--~~~-~v~~~~~~~g~~~~i~~D~vv~a~G~~  270 (464)
T 2eq6_A          209 DPETAALLRRALEKEGIRVRTKTKAVGYEKKK--DGL-HVRLEPAEGGEGEEVVVDKVLVAVGRK  270 (464)
T ss_dssp             CHHHHHHHHHHHHHTTCEEECSEEEEEEEEET--TEE-EEEEEETTCCSCEEEEESEEEECSCEE
T ss_pred             CHHHHHHHHHHHHhcCCEEEcCCEEEEEEEeC--CEE-EEEEeecCCCceeEEEcCEEEECCCcc
Confidence            34577888889999999999999999998766  443 3554  4  55  78999999999864

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=92.90  E-value=0.27  Score=45.93  Aligned_cols=57  Identities=14%  Similarity=0.272  Sum_probs=43.7

Q ss_pred             chhhhHHHHHHH-HHcCCeEEcceeeeEEEecCCCCeEEEEEE---CC--eEEecCEEEEeeChhh
Q 019274           60 REKIFEPWMDSM-RTRGCEFLDGRRVTDFIYDEERCCISDVVC---GK--ETYSAGAVVLAVGIST  119 (343)
Q Consensus        60 ~~~l~~~l~~~l-~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~---~g--~~~~ad~VV~a~p~~~  119 (343)
                      ...+.+.+.+.+ ++.|++|+++++|++|..++  +.+ .|.+   +|  +++++|.||+|++...
T Consensus       214 d~~~~~~l~~~l~~~~gv~i~~~~~v~~i~~~~--~~~-~v~~~~~~g~~~~i~~D~vv~a~G~~p  276 (468)
T 2qae_A          214 DEDVTNALVGALAKNEKMKFMTSTKVVGGTNNG--DSV-SLEVEGKNGKRETVTCEALLVSVGRRP  276 (468)
T ss_dssp             CHHHHHHHHHHHHHHTCCEEECSCEEEEEEECS--SSE-EEEEECC---EEEEEESEEEECSCEEE
T ss_pred             CHHHHHHHHHHHhhcCCcEEEeCCEEEEEEEcC--CeE-EEEEEcCCCceEEEECCEEEECCCccc
Confidence            345678888999 99999999999999998765  333 3444   34  5789999999998643

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=92.63  E-value=0.32  Score=45.39  Aligned_cols=56  Identities=14%  Similarity=0.235  Sum_probs=44.3

Q ss_pred             chhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE--CC--eEEecCEEEEeeChh
Q 019274           60 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GK--ETYSAGAVVLAVGIS  118 (343)
Q Consensus        60 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~--~g--~~~~ad~VV~a~p~~  118 (343)
                      ...+.+.+.+.+++.|++|+++++|++|..++  +++ .+.+  +|  .++++|.||++++..
T Consensus       211 ~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~--~~~-~v~~~~~g~~~~~~~D~vv~a~G~~  270 (464)
T 2a8x_A          211 DADVSKEIEKQFKKLGVTILTATKVESIADGG--SQV-TVTVTKDGVAQELKAEKVLQAIGFA  270 (464)
T ss_dssp             CHHHHHHHHHHHHHHTCEEECSCEEEEEEECS--SCE-EEEEESSSCEEEEEESEEEECSCEE
T ss_pred             CHHHHHHHHHHHHHcCCEEEeCcEEEEEEEcC--CeE-EEEEEcCCceEEEEcCEEEECCCCC
Confidence            34577888889999999999999999998765  443 3554  45  578999999999864

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=92.61  E-value=0.18  Score=48.22  Aligned_cols=57  Identities=30%  Similarity=0.334  Sum_probs=46.2

Q ss_pred             hhhHHHHHHHHHcCC--eEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhh
Q 019274           62 KIFEPWMDSMRTRGC--EFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST  119 (343)
Q Consensus        62 ~l~~~l~~~l~~~G~--~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~  119 (343)
                      .+.+.+.+.+++.|.  +|+++++|+++..+++ +..+.|+++ |++++||.||+|++...
T Consensus        88 ei~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~-~~~~~V~~~~G~~i~ad~lV~AtG~~s  147 (540)
T 3gwf_A           88 EILEYLEDVVDRFDLRRHFKFGTEVTSALYLDD-ENLWEVTTDHGEVYRAKYVVNAVGLLS  147 (540)
T ss_dssp             HHHHHHHHHHHHTTCGGGEEESCCEEEEEEETT-TTEEEEEETTSCEEEEEEEEECCCSCC
T ss_pred             HHHHHHHHHHHHcCCcceeEeccEEEEEEEeCC-CCEEEEEEcCCCEEEeCEEEECCcccc
Confidence            467778888888888  8999999999998764 334678886 56799999999999643

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=92.52  E-value=0.2  Score=48.06  Aligned_cols=56  Identities=23%  Similarity=0.125  Sum_probs=45.2

Q ss_pred             hhhHHHHHHHHHcCC--eEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChh
Q 019274           62 KIFEPWMDSMRTRGC--EFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS  118 (343)
Q Consensus        62 ~l~~~l~~~l~~~G~--~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~  118 (343)
                      .+.+.+.+.+++.|.  +|+++++|+++..+++ +..+.|+++ |++++||.||+|++..
T Consensus       100 ei~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~-~~~w~V~~~~G~~i~ad~lV~AtG~~  158 (549)
T 4ap3_A          100 EILAYLEHVADRFDLRRDIRFDTRVTSAVLDEE-GLRWTVRTDRGDEVSARFLVVAAGPL  158 (549)
T ss_dssp             HHHHHHHHHHHHTTCGGGEECSCCEEEEEEETT-TTEEEEEETTCCEEEEEEEEECCCSE
T ss_pred             HHHHHHHHHHHHcCCCccEEECCEEEEEEEcCC-CCEEEEEECCCCEEEeCEEEECcCCC
Confidence            466777777888887  8999999999998764 334678886 6679999999999964

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=92.47  E-value=0.28  Score=45.64  Aligned_cols=57  Identities=16%  Similarity=0.188  Sum_probs=44.5

Q ss_pred             chhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE--C--CeEEecCEEEEeeChhh
Q 019274           60 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--G--KETYSAGAVVLAVGIST  119 (343)
Q Consensus        60 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~--~--g~~~~ad~VV~a~p~~~  119 (343)
                      ...+.+.+.+.+++.|++|+++++|++|..++  +.+ .|++  +  +.++++|.||++++...
T Consensus       210 ~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~--~~~-~v~~~~~g~~~~~~~D~vv~a~G~~p  270 (455)
T 1ebd_A          210 EKQMAAIIKKRLKKKGVEVVTNALAKGAEERE--DGV-TVTYEANGETKTIDADYVLVTVGRRP  270 (455)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEESEEEEEEEEET--TEE-EEEEEETTEEEEEEESEEEECSCEEE
T ss_pred             CHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeC--CeE-EEEEEeCCceeEEEcCEEEECcCCCc
Confidence            34577888889999999999999999998765  443 3443  2  35789999999998643

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=92.25  E-value=0.2  Score=49.16  Aligned_cols=56  Identities=16%  Similarity=0.205  Sum_probs=46.7

Q ss_pred             hhhHHHHHHHHHc--CCeEEcceeeeEEEecCCCC---eEEEEEE----CCe--EEecCEEEEeeChhh
Q 019274           62 KIFEPWMDSMRTR--GCEFLDGRRVTDFIYDEERC---CISDVVC----GKE--TYSAGAVVLAVGIST  119 (343)
Q Consensus        62 ~l~~~l~~~l~~~--G~~i~~~~~V~~I~~~~~~g---~v~~V~~----~g~--~~~ad~VV~a~p~~~  119 (343)
                      .+.+.|.+.+++.  |++|+.++.|.+|..++  +   +|.+|..    +|+  .+.|+.||+|++...
T Consensus       167 ~i~~~L~~~a~~~~~gV~i~~~~~v~dLi~~~--~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVLATGG~g  233 (662)
T 3gyx_A          167 SYKVIVAEAAKNALGQDRIIERIFIVKLLLDK--NTPNRIAGAVGFNLRANEVHIFKANAMVVACGGAV  233 (662)
T ss_dssp             SHHHHHHHHHHHHHCTTTEECSEEECCCEECS--SSTTBEEEEEEEESSSSCEEEEECSEEEECCCCBC
T ss_pred             HHHHHHHHHHHhcCCCcEEEEceEEEEEEEeC--CccceEEEEEEEEcCCCcEEEEEeCEEEECCCccc
Confidence            5788899998887  99999999999999876  5   8888864    243  579999999998754

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=92.17  E-value=0.2  Score=47.08  Aligned_cols=57  Identities=19%  Similarity=0.193  Sum_probs=44.8

Q ss_pred             chhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE-C----CeEEecCEEEEeeChhh
Q 019274           60 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-G----KETYSAGAVVLAVGIST  119 (343)
Q Consensus        60 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~-~----g~~~~ad~VV~a~p~~~  119 (343)
                      ...+.+.+.+.+++.|++|+++++|++|..++  +. ..|++ +    |+++++|.||++++...
T Consensus       225 ~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~--~~-~~v~~~~~~~~g~~~~~D~vv~a~G~~p  286 (482)
T 1ojt_A          225 DRDLVKVWQKQNEYRFDNIMVNTKTVAVEPKE--DG-VYVTFEGANAPKEPQRYDAVLVAAGRAP  286 (482)
T ss_dssp             CHHHHHHHHHHHGGGEEEEECSCEEEEEEEET--TE-EEEEEESSSCCSSCEEESCEEECCCEEE
T ss_pred             CHHHHHHHHHHHHhcCCEEEECCEEEEEEEcC--Ce-EEEEEeccCCCceEEEcCEEEECcCCCc
Confidence            45577888899999999999999999998765  43 34544 3    45789999999998643

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=92.15  E-value=0.21  Score=48.72  Aligned_cols=55  Identities=16%  Similarity=0.082  Sum_probs=45.4

Q ss_pred             hhhHHHHHHHHHc-CCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhh
Q 019274           62 KIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST  119 (343)
Q Consensus        62 ~l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~  119 (343)
                      .+.+.|.+.+++. |++|+ +..|++|..++  ++|++|.+. |.+++||.||+|++.+.
T Consensus       118 ~l~~~L~~~l~~~~GV~I~-~~~V~~L~~d~--g~V~GV~t~~G~~i~Ad~VVLATG~~s  174 (641)
T 3cp8_A          118 QYSLYMRRIVEHEPNIDLL-QDTVIGVSANS--GKFSSVTVRSGRAIQAKAAILACGTFL  174 (641)
T ss_dssp             HHHHHHHHHHHTCTTEEEE-ECCEEEEEEET--TEEEEEEETTSCEEEEEEEEECCTTCB
T ss_pred             HHHHHHHHHHHhCCCCEEE-eeEEEEEEecC--CEEEEEEECCCcEEEeCEEEECcCCCC
Confidence            4678888888874 89985 56999998877  778888886 66899999999999764

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=92.12  E-value=0.28  Score=46.08  Aligned_cols=57  Identities=19%  Similarity=0.149  Sum_probs=44.0

Q ss_pred             chhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-C-----eEEecCEEEEeeChh
Q 019274           60 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-K-----ETYSAGAVVLAVGIS  118 (343)
Q Consensus        60 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g-----~~~~ad~VV~a~p~~  118 (343)
                      ...+.+.+.+.+++.|++|+++++|++|..+++ +++ .|++. +     .++++|.||++++..
T Consensus       226 d~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~-~~~-~v~~~~~~~~~~~~~~~D~vi~a~G~~  288 (483)
T 3dgh_A          226 DQQMAELVAASMEERGIPFLRKTVPLSVEKQDD-GKL-LVKYKNVETGEESEDVYDTVLWAIGRK  288 (483)
T ss_dssp             CHHHHHHHHHHHHHTTCCEEETEEEEEEEECTT-SCE-EEEEEETTTCCEEEEEESEEEECSCEE
T ss_pred             CHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCC-CcE-EEEEecCCCCceeEEEcCEEEECcccc
Confidence            345778888999999999999999999987653 443 35442 2     268999999999864

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=92.09  E-value=0.28  Score=47.34  Aligned_cols=54  Identities=13%  Similarity=0.146  Sum_probs=44.4

Q ss_pred             chhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChh
Q 019274           60 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS  118 (343)
Q Consensus        60 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~  118 (343)
                      ...+.+.+.+.+++.|++|+++++|++|..++  +   +|++. |+++++|.||+|++..
T Consensus       227 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~--~---~v~~~~g~~i~~D~Vi~a~G~~  281 (588)
T 3ics_A          227 DYEMAAYVHEHMKNHDVELVFEDGVDALEENG--A---VVRLKSGSVIQTDMLILAIGVQ  281 (588)
T ss_dssp             CHHHHHHHHHHHHHTTCEEECSCCEEEEEGGG--T---EEEETTSCEEECSEEEECSCEE
T ss_pred             CHHHHHHHHHHHHHcCCEEEECCeEEEEecCC--C---EEEECCCCEEEcCEEEEccCCC
Confidence            45578889999999999999999999998655  4   24554 6789999999999864

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=92.01  E-value=0.26  Score=46.18  Aligned_cols=58  Identities=14%  Similarity=0.114  Sum_probs=43.8

Q ss_pred             hhhhHHHHHHHHHcCCe--EEcceeeeEEEecCCCCeEEEEEEC----C--eEEecCEEEEeeChhh
Q 019274           61 EKIFEPWMDSMRTRGCE--FLDGRRVTDFIYDEERCCISDVVCG----K--ETYSAGAVVLAVGIST  119 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~--i~~~~~V~~I~~~~~~g~v~~V~~~----g--~~~~ad~VV~a~p~~~  119 (343)
                      ..+.+.|.+.+++.|.+  |+++++|++|..++++++ +.|++.    |  .+++||+||+|++...
T Consensus       101 ~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~-~~V~~~~~~~g~~~~~~~d~VVvAtG~~s  166 (464)
T 2xve_A          101 EVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQT-FTVTVQDHTTDTIYSEEFDYVVCCTGHFS  166 (464)
T ss_dssp             HHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTE-EEEEEEETTTTEEEEEEESEEEECCCSSS
T ss_pred             HHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCc-EEEEEEEcCCCceEEEEcCEEEECCCCCC
Confidence            34677788888888988  999999999988763123 456553    3  4789999999999644

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=92.01  E-value=0.27  Score=44.01  Aligned_cols=57  Identities=14%  Similarity=0.209  Sum_probs=45.8

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhh
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST  119 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~  119 (343)
                      ..+.+.+.+.+++.|.+++++++|++|..+++ +. +.|.+. +.++++|.||+|++...
T Consensus        74 ~~~~~~l~~~~~~~~~~~~~~~~v~~i~~~~~-~~-~~v~~~~g~~~~~~~li~AtG~~~  131 (360)
T 3ab1_A           74 IDLVESLWAQAERYNPDVVLNETVTKYTKLDD-GT-FETRTNTGNVYRSRAVLIAAGLGA  131 (360)
T ss_dssp             HHHHHHHHHHHHTTCCEEECSCCEEEEEECTT-SC-EEEEETTSCEEEEEEEEECCTTCS
T ss_pred             HHHHHHHHHHHHHhCCEEEcCCEEEEEEECCC-ce-EEEEECCCcEEEeeEEEEccCCCc
Confidence            44777888888888999999999999998763 33 457776 56899999999999843

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=92.00  E-value=0.43  Score=44.94  Aligned_cols=56  Identities=20%  Similarity=0.236  Sum_probs=44.5

Q ss_pred             chhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC----C--eEEecCEEEEeeChh
Q 019274           60 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG----K--ETYSAGAVVLAVGIS  118 (343)
Q Consensus        60 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~----g--~~~~ad~VV~a~p~~  118 (343)
                      ...+.+.+.+.+++.|++|+++++|++|..++  +.+ .|++.    |  .++++|.||+|++..
T Consensus       238 d~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~--~~~-~v~~~~~~~g~~~~i~~D~Vi~a~G~~  299 (491)
T 3urh_A          238 DGEVAKQLQRMLTKQGIDFKLGAKVTGAVKSG--DGA-KVTFEPVKGGEATTLDAEVVLIATGRK  299 (491)
T ss_dssp             CHHHHHHHHHHHHHTTCEEECSEEEEEEEEET--TEE-EEEEEETTSCCCEEEEESEEEECCCCE
T ss_pred             CHHHHHHHHHHHHhCCCEEEECCeEEEEEEeC--CEE-EEEEEecCCCceEEEEcCEEEEeeCCc
Confidence            45578888899999999999999999998776  443 34432    4  578999999999864

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=91.93  E-value=0.34  Score=45.40  Aligned_cols=56  Identities=18%  Similarity=0.273  Sum_probs=43.8

Q ss_pred             chhhhHHHHHHHHHcCCeEEcceeeeEEEe--cCCCCeEEEEEEC------CeEEecCEEEEeeChh
Q 019274           60 REKIFEPWMDSMRTRGCEFLDGRRVTDFIY--DEERCCISDVVCG------KETYSAGAVVLAVGIS  118 (343)
Q Consensus        60 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~--~~~~g~v~~V~~~------g~~~~ad~VV~a~p~~  118 (343)
                      ...+.+.+.+.+++.|++|+++++|++|..  ++  +. ..|++.      ++++++|.||+|++..
T Consensus       223 ~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~--~~-~~v~~~~~~~g~~~~~~~D~vv~a~G~~  286 (478)
T 1v59_A          223 DGEVAKATQKFLKKQGLDFKLSTKVISAKRNDDK--NV-VEIVVEDTKTNKQENLEAEVLLVAVGRR  286 (478)
T ss_dssp             CHHHHHHHHHHHHHTTCEEECSEEEEEEEEETTT--TE-EEEEEEETTTTEEEEEEESEEEECSCEE
T ss_pred             CHHHHHHHHHHHHHCCCEEEeCCEEEEEEEecCC--Ce-EEEEEEEcCCCCceEEECCEEEECCCCC
Confidence            345778889999999999999999999987  33  33 445542      3578999999999864

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=91.92  E-value=0.32  Score=42.42  Aligned_cols=51  Identities=10%  Similarity=0.239  Sum_probs=38.4

Q ss_pred             HHHHHHHHH-cCCeEEcceeeeEEEecCCCCeEEEEEEC----C--eEEecCEEEEeeCh
Q 019274           65 EPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVCG----K--ETYSAGAVVLAVGI  117 (343)
Q Consensus        65 ~~l~~~l~~-~G~~i~~~~~V~~I~~~~~~g~v~~V~~~----g--~~~~ad~VV~a~p~  117 (343)
                      +.+.+.+++ .|++|+++++|++|..++  +++.+|++.    |  .++.+|.||++++.
T Consensus       183 ~~~~~~l~~~~gv~v~~~~~v~~i~~~~--~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~  240 (310)
T 1fl2_A          183 QVLQDKLRSLKNVDIILNAQTTEVKGDG--SKVVGLEYRDRVSGDIHNIELAGIFVQIGL  240 (310)
T ss_dssp             HHHHHHHHTCTTEEEESSEEEEEEEESS--SSEEEEEEEETTTCCEEEEECSEEEECSCE
T ss_pred             HHHHHHHhhCCCeEEecCCceEEEEcCC--CcEEEEEEEECCCCcEEEEEcCEEEEeeCC
Confidence            445666776 699999999999998765  666566652    3  26789999998764

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=91.75  E-value=0.28  Score=42.78  Aligned_cols=57  Identities=11%  Similarity=0.184  Sum_probs=44.2

Q ss_pred             hhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChh
Q 019274           62 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS  118 (343)
Q Consensus        62 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~  118 (343)
                      .+.+.+.+.+++.|++++.+++|++|..+.+++..+.|.++ ++++++|.||+|++..
T Consensus        57 ~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~lv~AtG~~  114 (310)
T 1fl2_A           57 KLAGALKVHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAK  114 (310)
T ss_dssp             HHHHHHHHHHHTSCEEEECSCCEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCEE
T ss_pred             HHHHHHHHHHHHcCCeEEccCEEEEEEecccCCceEEEEECCCCEEEeCEEEECcCCC
Confidence            46777888888889999999999999765310223567776 5689999999999974

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=91.65  E-value=0.28  Score=46.88  Aligned_cols=59  Identities=14%  Similarity=0.202  Sum_probs=44.9

Q ss_pred             HHHHHHHHH-cCCeEEcceeeeEEEecCCCCeEEEEEEC----Ce--EE---ecCEEEEeeChhhHHHhhh
Q 019274           65 EPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVCG----KE--TY---SAGAVVLAVGISTLQELIK  125 (343)
Q Consensus        65 ~~l~~~l~~-~G~~i~~~~~V~~I~~~~~~g~v~~V~~~----g~--~~---~ad~VV~a~p~~~~~~Ll~  125 (343)
                      .++.+.+.+ .+++|++++.|++|..++  +++++|++.    |+  ++   .++.||+|++.....+|+.
T Consensus       199 ~~~l~~~~~~~~~~i~~~~~V~~i~~~~--~~~~gV~~~~~~~g~~~~~~v~~~~~VIlaaG~~~sp~lL~  267 (546)
T 1kdg_A          199 ATYLQTALARPNFTFKTNVMVSNVVRNG--SQILGVQTNDPTLGPNGFIPVTPKGRVILSAGAFGTSRILF  267 (546)
T ss_dssp             HTHHHHHHTCTTEEEECSCCEEEEEEET--TEEEEEEESCTTSSGGGEEEEEEEEEEEECSHHHHHHHHHH
T ss_pred             HHHHHHHhhCCCcEEEeCCEEEEEEEeC--CEEEEEEEEecCCCceeEEEEEeCCEEEEcCChhcCHHHHH
Confidence            345555554 489999999999999987  789999874    32  33   7899999999977666543

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=91.57  E-value=0.33  Score=42.84  Aligned_cols=55  Identities=16%  Similarity=0.262  Sum_probs=44.6

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChh
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS  118 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~  118 (343)
                      ..+.+.+.+.+++.|.+++++++|++|..++  +. +.|.++ +.++++|.||+|++..
T Consensus        65 ~~~~~~l~~~~~~~~~~~~~~~~v~~i~~~~--~~-~~v~~~~g~~~~~~~lv~AtG~~  120 (335)
T 2zbw_A           65 KDLVKGLVEQVAPFNPVYSLGERAETLEREG--DL-FKVTTSQGNAYTAKAVIIAAGVG  120 (335)
T ss_dssp             HHHHHHHHHHHGGGCCEEEESCCEEEEEEET--TE-EEEEETTSCEEEEEEEEECCTTS
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCEEEEEEECC--CE-EEEEECCCCEEEeCEEEECCCCC
Confidence            3467778888888899999999999998876  43 457676 5589999999999974

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=91.54  E-value=0.14  Score=50.61  Aligned_cols=54  Identities=11%  Similarity=0.083  Sum_probs=39.7

Q ss_pred             hhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChh
Q 019274           63 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS  118 (343)
Q Consensus        63 l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~  118 (343)
                      +.+.+.+.+++.|++|+++++|++|..++  ..+..+.++ +++++||.||+|++..
T Consensus       569 ~~~~l~~~l~~~GV~i~~~~~V~~i~~~~--~~v~~~~~~~~~~i~aD~VV~A~G~~  623 (690)
T 3k30_A          569 EVNRIQRRLIENGVARVTDHAVVAVGAGG--VTVRDTYASIERELECDAVVMVTARL  623 (690)
T ss_dssp             CHHHHHHHHHHTTCEEEESEEEEEEETTE--EEEEETTTCCEEEEECSEEEEESCEE
T ss_pred             hHHHHHHHHHHCCCEEEcCcEEEEEECCe--EEEEEccCCeEEEEECCEEEECCCCC
Confidence            46778888999999999999999997432  222111122 3578999999999864

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=91.51  E-value=0.41  Score=44.73  Aligned_cols=57  Identities=16%  Similarity=0.235  Sum_probs=44.5

Q ss_pred             chhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE----CC--eEEecCEEEEeeChhh
Q 019274           60 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GK--ETYSAGAVVLAVGIST  119 (343)
Q Consensus        60 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~----~g--~~~~ad~VV~a~p~~~  119 (343)
                      ...+.+.+.+.+++.|++|+++++|++|..++  +.+ .|.+    +|  .++++|.||++++...
T Consensus       217 ~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~--~~~-~v~~~~~~~g~~~~~~~D~vv~a~G~~p  279 (470)
T 1dxl_A          217 DAEIRKQFQRSLEKQGMKFKLKTKVVGVDTSG--DGV-KLTVEPSAGGEQTIIEADVVLVSAGRTP  279 (470)
T ss_dssp             CHHHHHHHHHHHHHSSCCEECSEEEEEEECSS--SSE-EEEEEESSSCCCEEEEESEEECCCCEEE
T ss_pred             cHHHHHHHHHHHHHcCCEEEeCCEEEEEEEcC--CeE-EEEEEecCCCcceEEECCEEEECCCCCc
Confidence            34577888999999999999999999998765  333 3443    33  5789999999998743

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=91.17  E-value=0.33  Score=46.00  Aligned_cols=57  Identities=12%  Similarity=0.072  Sum_probs=42.8

Q ss_pred             CCchhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-C----eEEecCEEEEeeCh
Q 019274           58 TLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-K----ETYSAGAVVLAVGI  117 (343)
Q Consensus        58 G~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g----~~~~ad~VV~a~p~  117 (343)
                      .+...+.+.+.+.+++.|++|++|++|++|.-+   +.+..+... |    +++.||.||+|++.
T Consensus       269 ~~~~~~~~~~~~~L~~~GV~v~~~~~v~~v~~~---~~~~~~~~~dg~~~~~~i~ad~viwa~Gv  330 (502)
T 4g6h_A          269 MFEKKLSSYAQSHLENTSIKVHLRTAVAKVEEK---QLLAKTKHEDGKITEETIPYGTLIWATGN  330 (502)
T ss_dssp             TSCHHHHHHHHHHHHHTTCEEETTEEEEEECSS---EEEEEEECTTSCEEEEEEECSEEEECCCE
T ss_pred             CCCHHHHHHHHHHHHhcceeeecCceEEEEeCC---ceEEEEEecCcccceeeeccCEEEEccCC
Confidence            445678888999999999999999999998532   322233332 3    36899999999874

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=90.97  E-value=0.31  Score=46.70  Aligned_cols=58  Identities=16%  Similarity=0.119  Sum_probs=45.8

Q ss_pred             hhhhHHHHHHHHHcCC--eEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhh
Q 019274           61 EKIFEPWMDSMRTRGC--EFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST  119 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~--~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~  119 (343)
                      ..+.+.+.+.+++.|.  +|+++++|+++..+++ +..+.|+++ |++++||.||+|++...
T Consensus        87 ~ei~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~-~~~w~V~~~~G~~~~ad~lV~AtG~~s  147 (545)
T 3uox_A           87 PEMLRYVNRAADAMDVRKHYRFNTRVTAARYVEN-DRLWEVTLDNEEVVTCRFLISATGPLS  147 (545)
T ss_dssp             HHHHHHHHHHHHHHTCGGGEECSCCEEEEEEEGG-GTEEEEEETTTEEEEEEEEEECCCSCB
T ss_pred             HHHHHHHHHHHHHcCCcCcEEECCEEEEEEEeCC-CCEEEEEECCCCEEEeCEEEECcCCCC
Confidence            3466777777788787  8999999999998764 334678886 67899999999999644

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=90.96  E-value=0.31  Score=42.97  Aligned_cols=54  Identities=17%  Similarity=0.232  Sum_probs=43.9

Q ss_pred             hhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhh
Q 019274           62 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST  119 (343)
Q Consensus        62 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~  119 (343)
                      .+.+.+.+.+++.|++++.++ |.+|..++  +. +.|.++++++++|.||+|++...
T Consensus        71 ~~~~~l~~~~~~~gv~~~~~~-v~~i~~~~--~~-~~v~~~~~~~~~~~vv~A~G~~~  124 (333)
T 1vdc_A           71 ELTDKFRKQSERFGTTIFTET-VTKVDFSS--KP-FKLFTDSKAILADAVILAIGAVA  124 (333)
T ss_dssp             HHHHHHHHHHHHTTCEEECCC-CCEEECSS--SS-EEEECSSEEEEEEEEEECCCEEE
T ss_pred             HHHHHHHHHHHHCCCEEEEeE-EEEEEEcC--CE-EEEEECCcEEEcCEEEECCCCCc
Confidence            477788888888999999997 99998766  43 34666777899999999999853

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=90.75  E-value=0.61  Score=41.76  Aligned_cols=58  Identities=16%  Similarity=0.242  Sum_probs=43.8

Q ss_pred             hhhHHHHHHHHH-cCCeEEcceeeeEEEecCC---------------CC--eEEEEEEC-------C--------eEEec
Q 019274           62 KIFEPWMDSMRT-RGCEFLDGRRVTDFIYDEE---------------RC--CISDVVCG-------K--------ETYSA  108 (343)
Q Consensus        62 ~l~~~l~~~l~~-~G~~i~~~~~V~~I~~~~~---------------~g--~v~~V~~~-------g--------~~~~a  108 (343)
                      .+.+.|.+.+++ .|++|+.++.|++|..+++               .|  +|.+|.+.       +        .+++|
T Consensus       161 d~~~~L~~~a~~~~gV~i~~~~~V~dLi~~~d~~~~~~~~~~g~~~~~g~~rV~GVv~~~~~v~~~g~~~~~~d~~~i~A  240 (344)
T 3jsk_A          161 LFTSTVLSKVLQRPNVKLFNATTVEDLITRKHHAESSSSSDDGEAEDEAKVRIAGVVTNWTLVSMHHDDQSAMDPNTINA  240 (344)
T ss_dssp             HHHHHHHHHHHTCTTEEEEETEEEEEEEEEEC----------------CCEEEEEEEEEEHHHHTTSSSSSCCBCEEEEC
T ss_pred             HHHHHHHHHHHhCCCCEEEeCCEEEEEEecCCcccccccccccccccCCCceEeEEEeeeeeeeccCCcccccCceEEEc
Confidence            356788888887 4999999999999987651               02  67787651       2        36899


Q ss_pred             CEEEEeeChhh
Q 019274          109 GAVVLAVGIST  119 (343)
Q Consensus       109 d~VV~a~p~~~  119 (343)
                      +.||.|++...
T Consensus       241 k~VV~ATG~~s  251 (344)
T 3jsk_A          241 PVIISTTGHDG  251 (344)
T ss_dssp             SEEEECCCSSS
T ss_pred             CEEEECCCCCc
Confidence            99999998754

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=90.68  E-value=0.46  Score=45.45  Aligned_cols=56  Identities=18%  Similarity=0.080  Sum_probs=46.6

Q ss_pred             chhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChh
Q 019274           60 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS  118 (343)
Q Consensus        60 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~  118 (343)
                      -..+.+.+.+.+++.|+++++++.|+++...+  +++ .|.+. ++++.+|.|++|++-.
T Consensus       262 D~ei~~~l~~~l~~~gi~~~~~~~v~~~~~~~--~~~-~v~~~~~~~~~~D~vLvAvGR~  318 (542)
T 4b1b_A          262 DQQCAVKVKLYMEEQGVMFKNGILPKKLTKMD--DKI-LVEFSDKTSELYDTVLYAIGRK  318 (542)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEETCCEEEEEEET--TEE-EEEETTSCEEEESEEEECSCEE
T ss_pred             chhHHHHHHHHHHhhcceeecceEEEEEEecC--CeE-EEEEcCCCeEEEEEEEEccccc
Confidence            45588899999999999999999999999877  554 46665 5678899999999853

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=90.48  E-value=0.25  Score=47.31  Aligned_cols=51  Identities=22%  Similarity=0.328  Sum_probs=40.7

Q ss_pred             HcCCeEEcceeeeEEEecCCCCeEEEEEEC----Ce--EEecC-EEEEeeChhhHHHhh
Q 019274           73 TRGCEFLDGRRVTDFIYDEERCCISDVVCG----KE--TYSAG-AVVLAVGISTLQELI  124 (343)
Q Consensus        73 ~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~----g~--~~~ad-~VV~a~p~~~~~~Ll  124 (343)
                      +.|++|++++.|++|..+++ +++++|++.    |+  ++.|+ .||+|++.....+|+
T Consensus       221 ~~~~~i~~~~~V~~i~~~~~-~~~~GV~~~~~~~g~~~~i~A~k~VIlaaG~~~sp~lL  278 (546)
T 2jbv_A          221 QENFTLLTGLRARQLVFDAD-RRCTGVDIVDSAFGHTHRLTARNEVVLSTGAIDTPKLL  278 (546)
T ss_dssp             CTTEEEECSCEEEEEEECTT-SBEEEEEEESSTTSCEEEEEEEEEEEECSHHHHHHHHH
T ss_pred             CCCcEEEeCCEEEEEEECCC-CeEEEEEEEECCCCcEEEEEeCccEEEecCccCCchhh
Confidence            56899999999999999764 678888862    32  67898 999999996655554

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=90.33  E-value=0.41  Score=43.79  Aligned_cols=51  Identities=12%  Similarity=0.095  Sum_probs=41.6

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChh
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS  118 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~  118 (343)
                      ..+.+.+.+.+++.|++++++++|++|.  +  +.   |++. |+++++|.||++++..
T Consensus       218 ~~~~~~~~~~l~~~gV~~~~~~~v~~i~--~--~~---v~~~~g~~~~~D~vi~a~G~~  269 (409)
T 3h8l_A          218 PNSRKAVASIYNQLGIKLVHNFKIKEIR--E--HE---IVDEKGNTIPADITILLPPYT  269 (409)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSCCEEEEC--S--SE---EEETTSCEEECSEEEEECCEE
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCceEEEC--C--Ce---EEECCCCEEeeeEEEECCCCC
Confidence            4578889999999999999999999985  2  22   4454 6789999999998863

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=90.13  E-value=0.81  Score=39.74  Aligned_cols=51  Identities=18%  Similarity=0.187  Sum_probs=37.7

Q ss_pred             HHHHHHHH-HcCCeEEcceeeeEEEecCCCCeEEEEEE----CCe--EEecCEEEEeeCh
Q 019274           65 EPWMDSMR-TRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGI  117 (343)
Q Consensus        65 ~~l~~~l~-~~G~~i~~~~~V~~I~~~~~~g~v~~V~~----~g~--~~~ad~VV~a~p~  117 (343)
                      ..+.+.+. +.|++|+++++|++|..++  +++.+|++    +|+  ++++|.||++++.
T Consensus       182 ~~~~~~l~~~~gv~v~~~~~v~~i~~~~--~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~  239 (311)
T 2q0l_A          182 PITLEHAKNNDKIEFLTPYVVEEIKGDA--SGVSSLSIKNTATNEKRELVVPGFFIFVGY  239 (311)
T ss_dssp             HHHHHHHHTCTTEEEETTEEEEEEEEET--TEEEEEEEEETTTCCEEEEECSEEEECSCE
T ss_pred             HHHHHHHhhCCCeEEEeCCEEEEEECCC--CcEeEEEEEecCCCceEEEecCEEEEEecC
Confidence            44556665 4699999999999998765  55555654    343  6899999998865

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=90.01  E-value=0.52  Score=41.28  Aligned_cols=50  Identities=16%  Similarity=0.253  Sum_probs=37.4

Q ss_pred             HHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC------CeEEecCEEEEeeCh
Q 019274           65 EPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG------KETYSAGAVVLAVGI  117 (343)
Q Consensus        65 ~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~------g~~~~ad~VV~a~p~  117 (343)
                      +...+.+++.|++++++++|.+|..++  + +..|++.      +.++.+|.||++++.
T Consensus       193 ~~~~~~l~~~gv~~~~~~~v~~i~~~~--~-~~~v~~~~~~~g~~~~~~~D~vv~a~G~  248 (332)
T 3lzw_A          193 EHSVENLHASKVNVLTPFVPAELIGED--K-IEQLVLEEVKGDRKEILEIDDLIVNYGF  248 (332)
T ss_dssp             HHHHHHHHHSSCEEETTEEEEEEECSS--S-CCEEEEEETTSCCEEEEECSEEEECCCE
T ss_pred             HHHHHHHhcCCeEEEeCceeeEEecCC--c-eEEEEEEecCCCceEEEECCEEEEeecc
Confidence            344556788999999999999998765  4 3445543      246899999998875

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=89.81  E-value=0.29  Score=46.23  Aligned_cols=50  Identities=16%  Similarity=0.250  Sum_probs=40.2

Q ss_pred             HHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhh
Q 019274           67 WMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST  119 (343)
Q Consensus        67 l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~  119 (343)
                      +.+.+++.|++|++++.|++|..++   ++..|+++ |+++++|.||++++...
T Consensus       263 le~~l~~~GV~v~~~~~v~~i~~~~---~v~~v~~~~g~~i~aD~Vv~a~G~~p  313 (493)
T 1y56_A          263 VIQELERWGIDYVHIPNVKRVEGNE---KVERVIDMNNHEYKVDALIFADGRRP  313 (493)
T ss_dssp             HHHHHHHHTCEEEECSSEEEEECSS---SCCEEEETTCCEEECSEEEECCCEEE
T ss_pred             HHHHHHhCCcEEEeCCeeEEEecCC---ceEEEEeCCCeEEEeCEEEECCCcCc
Confidence            3467888999999999999998543   45667775 67899999999998754

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=89.73  E-value=0.6  Score=42.47  Aligned_cols=58  Identities=10%  Similarity=0.102  Sum_probs=42.9

Q ss_pred             hhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhH-HHhhh
Q 019274           63 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTL-QELIK  125 (343)
Q Consensus        63 l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~-~~Ll~  125 (343)
                      +.+.|.+.+  .|++|+++++|++|..++  +.+ .|++. |++++||.||.|.+.... .+.+.
T Consensus       101 l~~~L~~~~--~~~~i~~~~~v~~i~~~~--~~v-~v~~~~g~~~~ad~vV~AdG~~S~vr~~~~  160 (397)
T 2vou_A          101 IYGGLYELF--GPERYHTSKCLVGLSQDS--ETV-QMRFSDGTKAEANWVIGADGGASVVRKRLL  160 (397)
T ss_dssp             HHHHHHHHH--CSTTEETTCCEEEEEECS--SCE-EEEETTSCEEEESEEEECCCTTCHHHHHHH
T ss_pred             HHHHHHHhC--CCcEEEcCCEEEEEEecC--CEE-EEEECCCCEEECCEEEECCCcchhHHHHhc
Confidence            444554443  389999999999999877  444 46665 668999999999999775 34443

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=89.59  E-value=0.55  Score=44.83  Aligned_cols=56  Identities=16%  Similarity=0.035  Sum_probs=42.3

Q ss_pred             hhHHHHHHHHHcC--CeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhh
Q 019274           63 IFEPWMDSMRTRG--CEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST  119 (343)
Q Consensus        63 l~~~l~~~l~~~G--~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~  119 (343)
                      +.+.+...+++.+  .+|+++++|+++..+++ +..+.|+++ |++++||.||+|++...
T Consensus        96 i~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~-~~~w~V~~~~G~~~~ad~vV~AtG~~s  154 (542)
T 1w4x_A           96 ILRYINFVADKFDLRSGITFHTTVTAAAFDEA-TNTWTVDTNHGDRIRARYLIMASGQLS  154 (542)
T ss_dssp             HHHHHHHHHHHTTGGGGEECSCCEEEEEEETT-TTEEEEEETTCCEEEEEEEEECCCSCC
T ss_pred             HHHHHHHHHHHcCCCceEEcCcEEEEEEEcCC-CCeEEEEECCCCEEEeCEEEECcCCCC
Confidence            5555666666655  68999999999998764 334668776 56899999999999753

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=89.53  E-value=0.52  Score=43.72  Aligned_cols=56  Identities=14%  Similarity=-0.137  Sum_probs=42.9

Q ss_pred             hhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC----Ce---EEecCEEEEeeChhhH
Q 019274           62 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG----KE---TYSAGAVVLAVGISTL  120 (343)
Q Consensus        62 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~----g~---~~~ad~VV~a~p~~~~  120 (343)
                      .+.+.|.+.+++.+..|+++++|++|..++  +. +.|++.    |+   +++||.||+|++....
T Consensus       116 ~l~~~l~~~~~~~~~~i~~~t~V~~v~~~~--~~-~~V~~~~~~~G~~~~~~~~d~VVvAtG~~s~  178 (447)
T 2gv8_A          116 TIQEYQRIYAQPLLPFIKLATDVLDIEKKD--GS-WVVTYKGTKAGSPISKDIFDAVSICNGHYEV  178 (447)
T ss_dssp             HHHHHHHHHHGGGGGGEECSEEEEEEEEET--TE-EEEEEEESSTTCCEEEEEESEEEECCCSSSS
T ss_pred             HHHHHHHHHHHHhhCeEEeCCEEEEEEeCC--Ce-EEEEEeecCCCCeeEEEEeCEEEECCCCCCC
Confidence            466777777777788999999999998776  54 445543    44   6899999999998543

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=89.44  E-value=0.26  Score=43.62  Aligned_cols=42  Identities=14%  Similarity=0.272  Sum_probs=30.2

Q ss_pred             CCCCCCCeEEeeccccC--CCC-C-ccchHHHHHHHHHHHHHHHHh
Q 019274          259 GFTSFPNLFMAGDWITT--RHG-S-WSQERSYVTGLEAANRVVDYL  300 (343)
Q Consensus       259 ~~~~~~~L~laGd~~~~--g~~-~-~~~ega~~Sg~~aA~~il~~~  300 (343)
                      ..|.+||+|.|||....  +.+ + ....+++.||+.||+.|++.+
T Consensus       279 ~~t~vpGv~aaGDaa~~v~g~~rmGp~~g~mi~SG~~AAe~I~~~l  324 (326)
T 3fpz_A          279 AYAGVDNMYFAGMEVAELDGLNRMGPTFGAMALSGVHAAEQILKHF  324 (326)
T ss_dssp             ECTTSBTEEECTHHHHHHHTCCBCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred             eEECCCCEEEEchHhccccCCCcCchHHHHHHHHHHHHHHHHHHHh
Confidence            34678999999997531  111 1 244567889999999999876

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=89.42  E-value=0.95  Score=40.18  Aligned_cols=40  Identities=10%  Similarity=0.189  Sum_probs=30.3

Q ss_pred             hhhHHHHHHHHHc-CCeEEcceeeeEEEecCC-C-C--eEEEEEE
Q 019274           62 KIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEE-R-C--CISDVVC  101 (343)
Q Consensus        62 ~l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~-~-g--~v~~V~~  101 (343)
                      .+.+.|.+.+.+. |++|+.+++|++|..+++ + |  +|.+|.+
T Consensus       147 ~~~~~L~~~a~~~~GV~i~~~~~V~~Ll~~~~~~~g~~rV~GVvv  191 (326)
T 2gjc_A          147 LFISTVLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVT  191 (326)
T ss_dssp             HHHHHHHHHHHTSTTEEEETTEEEEEEEECCCC-----CEEEEEE
T ss_pred             HHHHHHHHHHHHhcCcEEEecceeeeeeecccccCCCcEEEEEEe
Confidence            3567788877775 999999999999988742 1 3  7888876

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=89.35  E-value=0.9  Score=42.66  Aligned_cols=57  Identities=18%  Similarity=0.202  Sum_probs=43.3

Q ss_pred             chhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE-C---Ce--EEecCEEEEeeChh
Q 019274           60 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-G---KE--TYSAGAVVLAVGIS  118 (343)
Q Consensus        60 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~-~---g~--~~~ad~VV~a~p~~  118 (343)
                      ...+.+.+.+.+++.|++|++++.|++|...++ +.+ .|++ +   |+  ++++|.||++++..
T Consensus       224 d~~~~~~l~~~l~~~gv~~~~~~~v~~i~~~~~-~~~-~v~~~~~~~g~~~~~~~D~vi~a~G~~  286 (488)
T 3dgz_A          224 DQQMSSLVTEHMESHGTQFLKGCVPSHIKKLPT-NQL-QVTWEDHASGKEDTGTFDTVLWAIGRV  286 (488)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEETEEEEEEEECTT-SCE-EEEEEETTTTEEEEEEESEEEECSCEE
T ss_pred             CHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCC-CcE-EEEEEeCCCCeeEEEECCEEEEcccCC
Confidence            355788888999999999999999999987543 443 3433 1   44  47899999999864

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=89.30  E-value=0.56  Score=40.86  Aligned_cols=54  Identities=15%  Similarity=0.159  Sum_probs=43.2

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChh
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS  118 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~  118 (343)
                      ..+.+.+.+.+++.|+++++ ++|++|..++  +. +.|.++ ++++++|.||+|++..
T Consensus        70 ~~~~~~~~~~~~~~~v~~~~-~~v~~i~~~~--~~-~~v~~~~g~~~~~d~lvlAtG~~  124 (323)
T 3f8d_A           70 SDMIKVFNKHIEKYEVPVLL-DIVEKIENRG--DE-FVVKTKRKGEFKADSVILGIGVK  124 (323)
T ss_dssp             HHHHHHHHHHHHTTTCCEEE-SCEEEEEEC----C-EEEEESSSCEEEEEEEEECCCCE
T ss_pred             HHHHHHHHHHHHHcCCEEEE-EEEEEEEecC--CE-EEEEECCCCEEEcCEEEECcCCC
Confidence            34777888888889999999 8999998876  44 457776 4789999999999976

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=89.10  E-value=0.86  Score=40.01  Aligned_cols=51  Identities=8%  Similarity=0.094  Sum_probs=37.4

Q ss_pred             HHHH-HHHHHcCCeEEcceeeeEEEecCCCC--eEEEEEE----CC--eEEecCEEEEeeCh
Q 019274           65 EPWM-DSMRTRGCEFLDGRRVTDFIYDEERC--CISDVVC----GK--ETYSAGAVVLAVGI  117 (343)
Q Consensus        65 ~~l~-~~l~~~G~~i~~~~~V~~I~~~~~~g--~v~~V~~----~g--~~~~ad~VV~a~p~  117 (343)
                      +.+. +.+++.|++|+++++|++|..++  +  ++.+|++    +|  .++.+|.||++++.
T Consensus       198 ~~~~~~~~~~~gv~i~~~~~v~~i~~~~--~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~  257 (333)
T 1vdc_A          198 KIMQQRALSNPKIDVIWNSSVVEAYGDG--ERDVLGGLKVKNVVTGDVSDLKVSGLFFAIGH  257 (333)
T ss_dssp             HHHHHHHHTCTTEEEECSEEEEEEEESS--SSSSEEEEEEEETTTCCEEEEECSEEEECSCE
T ss_pred             HHHHHHHHhCCCeeEecCCceEEEeCCC--CccceeeEEEEecCCCceEEEecCEEEEEeCC
Confidence            4444 33467899999999999998765  3  6555555    24  47899999999875

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=89.03  E-value=0.66  Score=43.05  Aligned_cols=56  Identities=18%  Similarity=0.265  Sum_probs=45.2

Q ss_pred             CchhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChh
Q 019274           59 LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS  118 (343)
Q Consensus        59 ~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~  118 (343)
                      +...+.+.+.+.+++. +++++++.|.+|..++   ++..+..+++++++|.||+|++..
T Consensus       188 ~~~~~~~~l~~~l~~~-v~i~~~~~v~~i~~~~---~v~~v~~~g~~i~~D~Vv~a~G~~  243 (449)
T 3kd9_A          188 FDKEVTDILEEKLKKH-VNLRLQEITMKIEGEE---RVEKVVTDAGEYKAELVILATGIK  243 (449)
T ss_dssp             SCHHHHHHHHHHHTTT-SEEEESCCEEEEECSS---SCCEEEETTEEEECSEEEECSCEE
T ss_pred             cCHHHHHHHHHHHHhC-cEEEeCCeEEEEeccC---cEEEEEeCCCEEECCEEEEeeCCc
Confidence            3455777888888888 9999999999997543   345567778899999999999864

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=89.02  E-value=0.96  Score=42.56  Aligned_cols=55  Identities=22%  Similarity=0.131  Sum_probs=43.6

Q ss_pred             chhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE---CC--eEEecCEEEEeeChh
Q 019274           60 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---GK--ETYSAGAVVLAVGIS  118 (343)
Q Consensus        60 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~---~g--~~~~ad~VV~a~p~~  118 (343)
                      ...+.+.+.+.+++. ++|+++++|++|..++  +++. |++   +|  .++++|.||+|++..
T Consensus       214 d~~~~~~l~~~l~~~-V~i~~~~~v~~i~~~~--~~v~-v~~~~~~G~~~~i~~D~Vi~a~G~~  273 (492)
T 3ic9_A          214 DEEMKRYAEKTFNEE-FYFDAKARVISTIEKE--DAVE-VIYFDKSGQKTTESFQYVLAATGRK  273 (492)
T ss_dssp             CHHHHHHHHHHHHTT-SEEETTCEEEEEEECS--SSEE-EEEECTTCCEEEEEESEEEECSCCE
T ss_pred             CHHHHHHHHHHHhhC-cEEEECCEEEEEEEcC--CEEE-EEEEeCCCceEEEECCEEEEeeCCc
Confidence            345778888888877 9999999999998876  4443 544   45  578999999999864

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=88.97  E-value=0.62  Score=42.37  Aligned_cols=50  Identities=14%  Similarity=0.064  Sum_probs=39.7

Q ss_pred             hhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeCh
Q 019274           63 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGI  117 (343)
Q Consensus        63 l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~  117 (343)
                      +.....+.+++.|++++++++|++|..++  ..   |+++ |+++.+|++|+|++.
T Consensus        64 l~~~~~~~~~~~~i~~~~~~~V~~id~~~--~~---v~~~~g~~~~yd~lvlAtG~  114 (385)
T 3klj_A           64 ILIKKNDWYEKNNIKVITSEFATSIDPNN--KL---VTLKSGEKIKYEKLIIASGS  114 (385)
T ss_dssp             TBSSCHHHHHHTTCEEECSCCEEEEETTT--TE---EEETTSCEEECSEEEECCCE
T ss_pred             ccCCCHHHHHHCCCEEEeCCEEEEEECCC--CE---EEECCCCEEECCEEEEecCC
Confidence            33445566778899999999999998765  43   5565 678999999999996

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=88.69  E-value=0.62  Score=44.28  Aligned_cols=57  Identities=9%  Similarity=0.212  Sum_probs=44.3

Q ss_pred             hhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChh
Q 019274           62 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS  118 (343)
Q Consensus        62 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~  118 (343)
                      .+.+.+.+.+++.|++++.+++|++|..+.+.+..+.|.++ |.++++|.||+|++..
T Consensus       268 ~l~~~l~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~V~~~~g~~~~~d~vVlAtG~~  325 (521)
T 1hyu_A          268 KLAGALKAHVSDYDVDVIDSQSASKLVPAATEGGLHQIETASGAVLKARSIIIATGAK  325 (521)
T ss_dssp             HHHHHHHHHHHTSCEEEECSCCEEEEECCSSTTSCEEEEETTSCEEEEEEEEECCCEE
T ss_pred             HHHHHHHHHHHHcCCEEEcCCEEEEEEeccCCCceEEEEECCCCEEEcCEEEECCCCC
Confidence            46778888888899999999999999764210223567776 5689999999999974

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=88.61  E-value=19  Score=35.12  Aligned_cols=38  Identities=18%  Similarity=0.119  Sum_probs=28.2

Q ss_pred             CCCeEEeeccccCCCCC--ccchHHHHHHHHHHHHHHHHh
Q 019274          263 FPNLFMAGDWITTRHGS--WSQERSYVTGLEAANRVVDYL  300 (343)
Q Consensus       263 ~~~L~laGd~~~~g~~~--~~~ega~~Sg~~aA~~il~~~  300 (343)
                      .++++++||..|...|.  .+|+-++..|.+.|.+|...+
T Consensus       350 ~gRV~L~GDAAH~~~P~~GqG~N~gi~DA~nLawkLa~vl  389 (665)
T 1pn0_A          350 DERVFIAGDACHTHSPKAGQGMNTSMMDTYNLGWKLGLVL  389 (665)
T ss_dssp             TTTEEECGGGTEECCSTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECccccCCCcccCCcchhHHHHHHHHHHHHHHH
Confidence            37899999998854442  567778888888877776544

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=88.29  E-value=0.58  Score=43.46  Aligned_cols=56  Identities=11%  Similarity=-0.054  Sum_probs=40.0

Q ss_pred             hhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEE--EEEEC-Ce----EEecCEEEEeeCh
Q 019274           62 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCIS--DVVCG-KE----TYSAGAVVLAVGI  117 (343)
Q Consensus        62 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~--~V~~~-g~----~~~ad~VV~a~p~  117 (343)
                      .+.+.+...+++.|.+|+++++|++|..++++++.+  .|++. ++    +++||+||+|++.
T Consensus       128 ~~~~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g~~~~~~~d~lVlAtG~  190 (463)
T 3s5w_A          128 EFNDYLRWVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRNADGEELVRTTRALVVSPGG  190 (463)
T ss_dssp             HHHHHHHHHHTTCTTTEEESEEEEEEEEEEETTEEEEEEEEEEETTSCEEEEEESEEEECCCC
T ss_pred             HHHHHHHHHHHHcCCeEEeCCEEEEEEEecCCCceEEEEEEEecCCCceEEEEeCEEEECCCC
Confidence            355666666677789999999999998762113343  34443 33    7899999999996

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=87.86  E-value=1.8  Score=40.08  Aligned_cols=42  Identities=19%  Similarity=0.084  Sum_probs=32.8

Q ss_pred             cCCeEEcceeeeEEEecCCCCeEEEEEE----CCe--EEecCEEEEeeChh
Q 019274           74 RGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIS  118 (343)
Q Consensus        74 ~G~~i~~~~~V~~I~~~~~~g~v~~V~~----~g~--~~~ad~VV~a~p~~  118 (343)
                      .|++|+++++|++|..++  +. +.|++    +|+  ++++|.||+|++..
T Consensus       329 ~~v~i~~~~~v~~v~~~~--~~-~~v~~~~~~~g~~~~~~~D~Vv~AtG~~  376 (463)
T 3s5w_A          329 PRHAFRCMTTVERATATA--QG-IELALRDAGSGELSVETYDAVILATGYE  376 (463)
T ss_dssp             CCSEEETTEEEEEEEEET--TE-EEEEEEETTTCCEEEEEESEEEECCCEE
T ss_pred             CCeEEEeCCEEEEEEecC--CE-EEEEEEEcCCCCeEEEECCEEEEeeCCC
Confidence            589999999999998776  44 34554    243  48999999999874

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=87.73  E-value=0.91  Score=39.41  Aligned_cols=54  Identities=19%  Similarity=0.275  Sum_probs=42.6

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChh
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS  118 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~  118 (343)
                      ..+.+.+.+.+++.|+++++ ++|++|..++  +. +.|.+. ++++++|.||+|++..
T Consensus        59 ~~~~~~l~~~~~~~~v~~~~-~~v~~i~~~~--~~-~~v~~~~g~~~~~~~vv~AtG~~  113 (311)
T 2q0l_A           59 LDFMQPWQEQCFRFGLKHEM-TAVQRVSKKD--SH-FVILAEDGKTFEAKSVIIATGGS  113 (311)
T ss_dssp             HHHHHHHHHHHHTTSCEEEC-SCEEEEEEET--TE-EEEEETTSCEEEEEEEEECCCEE
T ss_pred             HHHHHHHHHHHHHcCCEEEE-EEEEEEEEcC--CE-EEEEEcCCCEEECCEEEECCCCC
Confidence            34677788888888999998 7999998876  43 346554 6689999999999964

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=87.67  E-value=1.4  Score=38.50  Aligned_cols=50  Identities=14%  Similarity=0.080  Sum_probs=36.5

Q ss_pred             HHHHHHHHH-cCCeEEcceeeeEEEecCCCCeEEEEEE----CCe--EEecCEEEEeeCh
Q 019274           65 EPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGI  117 (343)
Q Consensus        65 ~~l~~~l~~-~G~~i~~~~~V~~I~~~~~~g~v~~V~~----~g~--~~~ad~VV~a~p~  117 (343)
                      ..+.+.+.+ .|++|+++++|++|..+   +++.+|++    +|+  ++++|.||++++.
T Consensus       191 ~~~~~~l~~~~gv~i~~~~~v~~i~~~---~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~  247 (325)
T 2q7v_A          191 KVAQARAFANPKMKFIWDTAVEEIQGA---DSVSGVKLRNLKTGEVSELATDGVFIFIGH  247 (325)
T ss_dssp             HHHHHHHHTCTTEEEECSEEEEEEEES---SSEEEEEEEETTTCCEEEEECSEEEECSCE
T ss_pred             hHHHHHHHhcCCceEecCCceEEEccC---CcEEEEEEEECCCCcEEEEEcCEEEEccCC
Confidence            445555554 59999999999999864   44556665    343  6899999999865

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=87.58  E-value=1.1  Score=40.75  Aligned_cols=59  Identities=15%  Similarity=0.143  Sum_probs=43.1

Q ss_pred             hhhHHHHHHHHH-cC-CeEEcceeeeEEEecCCCCeEEEEEE-C---C--eEEecCEEEEeeChhhH-HHhh
Q 019274           62 KIFEPWMDSMRT-RG-CEFLDGRRVTDFIYDEERCCISDVVC-G---K--ETYSAGAVVLAVGISTL-QELI  124 (343)
Q Consensus        62 ~l~~~l~~~l~~-~G-~~i~~~~~V~~I~~~~~~g~v~~V~~-~---g--~~~~ad~VV~a~p~~~~-~~Ll  124 (343)
                      .|.+.|.+.+++ .| ++|+++++|++|.. ++ + |. |++ +   |  .+++||.||.|.+.... .+.+
T Consensus       108 ~l~~~L~~~~~~~~g~~~v~~~~~v~~i~~-~~-~-v~-v~~~~~~~g~~~~~~ad~vV~AdG~~S~vR~~l  175 (410)
T 3c96_A          108 ELQMILLAAVRERLGQQAVRTGLGVERIEE-RD-G-RV-LIGARDGHGKPQALGADVLVGADGIHSAVRAHL  175 (410)
T ss_dssp             HHHHHHHHHHHHHHCTTSEEESEEEEEEEE-ET-T-EE-EEEEEETTSCEEEEEESEEEECCCTTCHHHHHH
T ss_pred             HHHHHHHHHHHhhCCCcEEEECCEEEEEec-CC-c-cE-EEEecCCCCCceEEecCEEEECCCccchhHHHh
Confidence            366778888776 37 48999999999988 52 4 43 433 2   5  47899999999999775 3444

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=87.50  E-value=0.9  Score=39.82  Aligned_cols=53  Identities=17%  Similarity=0.227  Sum_probs=43.0

Q ss_pred             hhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE----CCeEEecCEEEEeeChh
Q 019274           62 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKETYSAGAVVLAVGIS  118 (343)
Q Consensus        62 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~----~g~~~~ad~VV~a~p~~  118 (343)
                      .+.+.+.+.+++.|+++++++ |++|..++  +. +.+.+    ++.++.+|.||+|++..
T Consensus        85 ~~~~~~~~~~~~~gv~i~~~~-v~~i~~~~--~~-~~v~~~~~~~~~~~~~d~vvlAtG~~  141 (338)
T 3itj_A           85 ELMDRMREQSTKFGTEIITET-VSKVDLSS--KP-FKLWTEFNEDAEPVTTDAIILATGAS  141 (338)
T ss_dssp             HHHHHHHHHHHHTTCEEECSC-EEEEECSS--SS-EEEEETTCSSSCCEEEEEEEECCCEE
T ss_pred             HHHHHHHHHHHHcCCEEEEeE-EEEEEEcC--CE-EEEEEEecCCCcEEEeCEEEECcCCC
Confidence            577888888999999999998 99998876  44 34555    35678999999999874

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=87.42  E-value=1.1  Score=41.53  Aligned_cols=52  Identities=10%  Similarity=0.158  Sum_probs=42.3

Q ss_pred             chhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChh
Q 019274           60 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS  118 (343)
Q Consensus        60 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~  118 (343)
                      ...+.+.+.+.+++.|+++++++.|+++.  +  ..   |.+. |+++++|.||++++..
T Consensus       187 d~~~~~~~~~~l~~~gV~i~~~~~v~~~~--~--~~---v~~~~g~~~~~D~vl~a~G~~  239 (437)
T 4eqs_A          187 DADMNQPILDELDKREIPYRLNEEINAIN--G--NE---ITFKSGKVEHYDMIIEGVGTH  239 (437)
T ss_dssp             CGGGGHHHHHHHHHTTCCEEESCCEEEEE--T--TE---EEETTSCEEECSEEEECCCEE
T ss_pred             cchhHHHHHHHhhccceEEEeccEEEEec--C--Ce---eeecCCeEEeeeeEEEEecee
Confidence            45688899999999999999999999875  2  32   4454 6789999999999853

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=87.37  E-value=1.2  Score=38.64  Aligned_cols=50  Identities=18%  Similarity=0.379  Sum_probs=36.3

Q ss_pred             HHHHHHHH-cCCeEEcceeeeEEEecCCCCeEEEEEEC----Ce--EEecCEEEEeeChh
Q 019274           66 PWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVCG----KE--TYSAGAVVLAVGIS  118 (343)
Q Consensus        66 ~l~~~l~~-~G~~i~~~~~V~~I~~~~~~g~v~~V~~~----g~--~~~ad~VV~a~p~~  118 (343)
                      .+.+.+.+ .|++++++++|++|..++   ++.+|++.    |+  ++++|.||++++..
T Consensus       194 ~~~~~~~~~~gv~~~~~~~v~~i~~~~---~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~  250 (323)
T 3f8d_A          194 IYVETVKKKPNVEFVLNSVVKEIKGDK---VVKQVVVENLKTGEIKELNVNGVFIEIGFD  250 (323)
T ss_dssp             HHHHHHHTCTTEEEECSEEEEEEEESS---SEEEEEEEETTTCCEEEEECSEEEECCCEE
T ss_pred             HHHHHHHhCCCcEEEeCCEEEEEeccC---ceeEEEEEECCCCceEEEEcCEEEEEECCC
Confidence            34444544 499999999999998654   34556553    44  68999999999864

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=87.37  E-value=1.1  Score=40.37  Aligned_cols=52  Identities=17%  Similarity=0.209  Sum_probs=40.8

Q ss_pred             chhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChh
Q 019274           60 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS  118 (343)
Q Consensus        60 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~  118 (343)
                      ...+.+.+.+.+++.|++|+++++|++|.  .  ..   |+++++++++|.||++++..
T Consensus       182 ~~~~~~~l~~~l~~~gV~i~~~~~v~~i~--~--~~---v~~~~g~i~~D~vi~a~G~~  233 (367)
T 1xhc_A          182 DEELSNMIKDMLEETGVKFFLNSELLEAN--E--EG---VLTNSGFIEGKVKICAIGIV  233 (367)
T ss_dssp             CHHHHHHHHHHHHHTTEEEECSCCEEEEC--S--SE---EEETTEEEECSCEEEECCEE
T ss_pred             CHHHHHHHHHHHHHCCCEEEcCCEEEEEE--e--eE---EEECCCEEEcCEEEECcCCC
Confidence            34577888899999999999999999996  3  32   45553239999999999864

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=86.86  E-value=0.73  Score=42.93  Aligned_cols=54  Identities=22%  Similarity=0.328  Sum_probs=42.7

Q ss_pred             chhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-C--eEEecCEEEEeeChh
Q 019274           60 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-K--ETYSAGAVVLAVGIS  118 (343)
Q Consensus        60 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g--~~~~ad~VV~a~p~~  118 (343)
                      ...+.+.+.+.+++.|++|+++++|++|.. +  + + .++.+ |  .++++|.||+|++..
T Consensus       211 ~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~-~--~-v-~v~~~~G~~~~i~~D~vv~a~G~~  267 (458)
T 1lvl_A          211 DSELTAPVAESLKKLGIALHLGHSVEGYEN-G--C-L-LANDGKGGQLRLEADRVLVAVGRR  267 (458)
T ss_dssp             CHHHHHHHHHHHHHHTCEEETTCEEEEEET-T--E-E-EEECSSSCCCEECCSCEEECCCEE
T ss_pred             CHHHHHHHHHHHHHCCCEEEECCEEEEEEe-C--C-E-EEEECCCceEEEECCEEEECcCCC
Confidence            345778888889999999999999999975 4  4 3 34433 4  578999999999864

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=86.67  E-value=1.2  Score=38.97  Aligned_cols=53  Identities=15%  Similarity=0.152  Sum_probs=42.8

Q ss_pred             hhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChh
Q 019274           62 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS  118 (343)
Q Consensus        62 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~  118 (343)
                      .+.+.+.+.+++.|++++. ++|++|..++  +. +.|.++++++++|.||+|++..
T Consensus        73 ~~~~~~~~~~~~~~v~~~~-~~v~~i~~~~--~~-~~v~~~~~~~~~~~li~AtG~~  125 (319)
T 3cty_A           73 ELAKLFADHAANYAKIREG-VEVRSIKKTQ--GG-FDIETNDDTYHAKYVIITTGTT  125 (319)
T ss_dssp             HHHHHHHHHHHTTSEEEET-CCEEEEEEET--TE-EEEEESSSEEEEEEEEECCCEE
T ss_pred             HHHHHHHHHHHHcCCEEEE-eeEEEEEEeC--CE-EEEEECCCEEEeCEEEECCCCC
Confidence            4677788888888999998 7899998876  44 3466777789999999999974

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=86.01  E-value=0.98  Score=43.59  Aligned_cols=53  Identities=19%  Similarity=0.254  Sum_probs=41.6

Q ss_pred             HHcCCeEEcceeeeEEEecC---CCCeEEEEEEC---Ce--EEecC-EEEEeeChhhHHHhhh
Q 019274           72 RTRGCEFLDGRRVTDFIYDE---ERCCISDVVCG---KE--TYSAG-AVVLAVGISTLQELIK  125 (343)
Q Consensus        72 ~~~G~~i~~~~~V~~I~~~~---~~g~v~~V~~~---g~--~~~ad-~VV~a~p~~~~~~Ll~  125 (343)
                      ++.+.+|++++.|++|..+.   + ++++||+..   |.  ++.|+ .||+++++-...+||.
T Consensus       238 ~r~NL~V~t~a~V~rIl~d~~~~~-~ra~GV~~~~~~G~~~~v~A~kEVILsAGa~~SPqLL~  299 (583)
T 3qvp_A          238 QRPNLQVLTGQYVGKVLLSQNGTT-PRAVGVEFGTHKGNTHNVYAKHEVLLAAGSAVSPTILE  299 (583)
T ss_dssp             TCTTEEEECSCEEEEEEEECSSSS-CEEEEEEEESSTTCEEEEEEEEEEEECSCTTTHHHHHH
T ss_pred             cCCCcEEEcCCEEEEEEeccCCCC-CEEEEEEEEecCCcEEEEEECCEEEEeCCccCCHHHHH
Confidence            45688999999999999982   2 789999863   43  56786 6999999988777653

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=85.92  E-value=0.81  Score=44.55  Aligned_cols=53  Identities=13%  Similarity=0.147  Sum_probs=40.6

Q ss_pred             cCCeEEcceeeeEEEecCCCCeEEEEEEC----Ce--EEecCEEEEeeChhhHHHhhhh
Q 019274           74 RGCEFLDGRRVTDFIYDEERCCISDVVCG----KE--TYSAGAVVLAVGISTLQELIKN  126 (343)
Q Consensus        74 ~G~~i~~~~~V~~I~~~~~~g~v~~V~~~----g~--~~~ad~VV~a~p~~~~~~Ll~~  126 (343)
                      .|++|++++.|++|..+++++++++|++.    |+  ++.||.||++++.....++|..
T Consensus       273 ~nv~v~~~~~V~~i~~~~~~~~v~GV~~~~~~~g~~~~i~A~~VIlaaG~~~s~~lL~~  331 (623)
T 3pl8_A          273 ERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLVN  331 (623)
T ss_dssp             EEEEEECSEEEEEEEECTTSSCEEEEEEEETTTCCEEEECEEEEEECSCTTHHHHHHHT
T ss_pred             CCEEEEeCCEEEEEEEECCCCEEEEEEEEEcCCCcEEEEECCEEEEcCCCcCCHHHHHh
Confidence            37899999999999987531478888762    43  6789999999998776665543

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=85.63  E-value=0.49  Score=45.21  Aligned_cols=59  Identities=14%  Similarity=0.191  Sum_probs=42.7

Q ss_pred             HHHHHHHcCCeEEcceeeeEEEecCC-CCeEEEEEEC---Ce--EE---ecCEEEEeeChhhHHHhhh
Q 019274           67 WMDSMRTRGCEFLDGRRVTDFIYDEE-RCCISDVVCG---KE--TY---SAGAVVLAVGISTLQELIK  125 (343)
Q Consensus        67 l~~~l~~~G~~i~~~~~V~~I~~~~~-~g~v~~V~~~---g~--~~---~ad~VV~a~p~~~~~~Ll~  125 (343)
                      +.+.+++.|.+|++++.|++|..+++ .+++++|++.   |+  ++   .++.||+|+++....+|+.
T Consensus       200 ~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~GV~~~~~~g~~~~~~v~a~k~VILaaGa~~sp~lL~  267 (536)
T 1ju2_A          200 LLNKGNSNNLRVGVHASVEKIIFSNAPGLTATGVIYRDSNGTPHQAFVRSKGEVIVSAGTIGTPQLLL  267 (536)
T ss_dssp             GGGGSCTTTEEEEESCEEEEEEECCSSSCBEEEEEEECTTSCEEEEEEEEEEEEEECCHHHHHHHHHH
T ss_pred             hhhhhcCCCcEEEeCCEEEEEEECCCCCCEEEEEEEEeCCCceEEEEeccCCEEEEcCcccCCHHHHH
Confidence            33334567899999999999998762 1378888762   43  34   4689999999977666543

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=85.23  E-value=0.55  Score=43.38  Aligned_cols=53  Identities=8%  Similarity=-0.048  Sum_probs=38.9

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE-CC--eEEecCEEEEeeChh
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK--ETYSAGAVVLAVGIS  118 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~-~g--~~~~ad~VV~a~p~~  118 (343)
                      ....+.+.+.++++|+++++++.|++|.  +  +++. +.. +|  +++.||.||++++..
T Consensus       200 ~~~~~~l~~~l~~~GV~~~~~~~v~~v~--~--~~~~-~~~~~g~~~~i~~d~vi~~~G~~  255 (430)
T 3hyw_A          200 GASKRLVEDLFAERNIDWIANVAVKAIE--P--DKVI-YEDLNGNTHEVPAKFTMFMPSFQ  255 (430)
T ss_dssp             TTHHHHHHHHHHHTTCEEECSCEEEEEC--S--SEEE-EECTTSCEEEEECSEEEEECEEE
T ss_pred             HHHHHHHHHHHHhCCeEEEeCceEEEEe--C--CceE-EEeeCCCceEeecceEEEeccCC
Confidence            3355677788899999999999999985  3  3332 333 23  478999999998753

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=85.04  E-value=0.61  Score=42.42  Aligned_cols=53  Identities=15%  Similarity=0.085  Sum_probs=39.5

Q ss_pred             hhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhH
Q 019274           63 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTL  120 (343)
Q Consensus        63 l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~  120 (343)
                      |.+.|.+.++  +++|+++++|++|..++  +.+ .|++. |++++||.||.|.+....
T Consensus       130 l~~~L~~~~~--~~~i~~~~~v~~i~~~~--~~v-~v~~~~g~~~~ad~vV~AdG~~S~  183 (398)
T 2xdo_A          130 LRAILLNSLE--NDTVIWDRKLVMLEPGK--KKW-TLTFENKPSETADLVILANGGMSK  183 (398)
T ss_dssp             HHHHHHHTSC--TTSEEESCCEEEEEECS--SSE-EEEETTSCCEEESEEEECSCTTCS
T ss_pred             HHHHHHhhcC--CCEEEECCEEEEEEECC--CEE-EEEECCCcEEecCEEEECCCcchh
Confidence            4445554443  36899999999999876  444 46665 668999999999998764

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=84.71  E-value=1.3  Score=40.76  Aligned_cols=50  Identities=10%  Similarity=-0.012  Sum_probs=37.5

Q ss_pred             hhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE---C-----CeEEecCEEEEeeCh
Q 019274           63 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---G-----KETYSAGAVVLAVGI  117 (343)
Q Consensus        63 l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~---~-----g~~~~ad~VV~a~p~  117 (343)
                      +.+.+.+.+++.|++++++++|++|.-    +++. +..   +     +.++.+|.||++++.
T Consensus       210 ~~~~~~~~l~~~gI~~~~~~~v~~v~~----~~v~-~~~~~~~g~~~~~~~i~~D~vv~~~g~  267 (437)
T 3sx6_A          210 SKGILTKGLKEEGIEAYTNCKVTKVED----NKMY-VTQVDEKGETIKEMVLPVKFGMMIPAF  267 (437)
T ss_dssp             HHHHHHHHHHHTTCEEECSEEEEEEET----TEEE-EEEECTTSCEEEEEEEECSEEEEECCE
T ss_pred             HHHHHHHHHHHCCCEEEcCCEEEEEEC----CeEE-EEecccCCccccceEEEEeEEEEcCCC
Confidence            667788889999999999999999963    2222 221   2     347899999999763

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=84.53  E-value=1.3  Score=39.40  Aligned_cols=54  Identities=11%  Similarity=0.111  Sum_probs=40.2

Q ss_pred             hhhHHHHHHHHHcC-CeEEcceeeeEEEecCCCCeEEEEEEC-CeEE-ecCEEEEeeChh
Q 019274           62 KIFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVCG-KETY-SAGAVVLAVGIS  118 (343)
Q Consensus        62 ~l~~~l~~~l~~~G-~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~-~ad~VV~a~p~~  118 (343)
                      .+.+.+.+.+++.| ++|++++.|.+|..++  +. ..|++. |+++ .+|.||++++..
T Consensus       215 ~~~~~l~~~l~~~g~v~~~~~~~v~~i~~~~--~~-~~v~~~~g~~~~~~d~vi~a~G~~  271 (369)
T 3d1c_A          215 YTRQRLGNVIKQGARIEMNVHYTVKDIDFNN--GQ-YHISFDSGQSVHTPHEPILATGFD  271 (369)
T ss_dssp             HHHHHHHHHHHTTCCEEEECSCCEEEEEEET--TE-EEEEESSSCCEEESSCCEECCCBC
T ss_pred             HHHHHHHHHHhhCCcEEEecCcEEEEEEecC--Cc-eEEEecCCeEeccCCceEEeeccC
Confidence            34577888888887 9999999999997655  43 346554 5555 469999998863

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=84.50  E-value=1.5  Score=41.58  Aligned_cols=51  Identities=10%  Similarity=0.256  Sum_probs=38.3

Q ss_pred             HHHHHHHHH-cCCeEEcceeeeEEEecCCCCeEEEEEEC----Ce--EEecCEEEEeeCh
Q 019274           65 EPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVCG----KE--TYSAGAVVLAVGI  117 (343)
Q Consensus        65 ~~l~~~l~~-~G~~i~~~~~V~~I~~~~~~g~v~~V~~~----g~--~~~ad~VV~a~p~  117 (343)
                      +.+.+.+++ .|++|++++.|++|..++  +++.+|++.    |+  ++.+|.||++++.
T Consensus       394 ~~l~~~l~~~~gV~v~~~~~v~~i~~~~--~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~  451 (521)
T 1hyu_A          394 QVLQDKVRSLKNVDIILNAQTTEVKGDG--SKVVGLEYRDRVSGDIHSVALAGIFVQIGL  451 (521)
T ss_dssp             HHHHHHHTTCTTEEEECSEEEEEEEECS--SSEEEEEEEETTTCCEEEEECSEEEECCCE
T ss_pred             HHHHHHHhcCCCcEEEeCCEEEEEEcCC--CcEEEEEEEeCCCCceEEEEcCEEEECcCC
Confidence            345666776 599999999999998765  666666652    43  6789999998774

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=84.15  E-value=1.9  Score=37.39  Aligned_cols=54  Identities=13%  Similarity=0.155  Sum_probs=42.0

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChh
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS  118 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~  118 (343)
                      ..+.+.+.+.+++.|++++.++ |+.|..++  +. +.|..++.++++|.||+|++..
T Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~-v~~i~~~~--~~-~~v~~~~~~~~~~~lv~AtG~~  115 (320)
T 1trb_A           62 PLLMERMHEHATKFETEIIFDH-INKVDLQN--RP-FRLNGDNGEYTCDALIIATGAS  115 (320)
T ss_dssp             HHHHHHHHHHHHHTTCEEECCC-EEEEECSS--SS-EEEEESSCEEEEEEEEECCCEE
T ss_pred             HHHHHHHHHHHHHCCCEEEEee-eeEEEecC--CE-EEEEeCCCEEEcCEEEECCCCC
Confidence            3467778888888999999996 99998765  44 3343456789999999999874

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=83.99  E-value=1.3  Score=38.54  Aligned_cols=52  Identities=17%  Similarity=0.195  Sum_probs=37.9

Q ss_pred             hhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChh
Q 019274           63 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS  118 (343)
Q Consensus        63 l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~  118 (343)
                      +.........+.+..+..+..+.......  .  ..+..++++++||++|+|++..
T Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~d~liiAtGs~  115 (312)
T 4gcm_A           64 LSTKMFEHAKKFGAVYQYGDIKSVEDKGE--Y--KVINFGNKELTAKAVIIATGAE  115 (312)
T ss_dssp             HHHHHHHHHHHTTCEEEECCCCEEEECSS--C--EEEECSSCEEEEEEEEECCCEE
T ss_pred             HHHHHHHHHhhccccccceeeeeeeeeec--c--eeeccCCeEEEeceeEEcccCc
Confidence            55566666777788888887777766544  3  3355567899999999999964

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=83.89  E-value=1.8  Score=40.33  Aligned_cols=43  Identities=14%  Similarity=0.141  Sum_probs=32.0

Q ss_pred             cCCeEEcceeeeEEEecCCCC-eEEEEEEC----------------C--eEEecCEEEEeeCh
Q 019274           74 RGCEFLDGRRVTDFIYDEERC-CISDVVCG----------------K--ETYSAGAVVLAVGI  117 (343)
Q Consensus        74 ~G~~i~~~~~V~~I~~~~~~g-~v~~V~~~----------------g--~~~~ad~VV~a~p~  117 (343)
                      +|++|++++.+.+|.-+++ + ++.+|++.                |  +++.+|.||++++.
T Consensus       270 ~gv~~~~~~~~~~i~~~~~-~~~v~~v~~~~~~l~~~~~~~~~~~~g~~~~i~~d~Vi~a~G~  331 (460)
T 1cjc_A          270 RAWGLRFFRSPQQVLPSPD-GRRAAGIRLAVTRLEGIGEATRAVPTGDVEDLPCGLVLSSIGY  331 (460)
T ss_dssp             EEEEEECSEEEEEEEECTT-SSSEEEEEEEEEEEESSGGGCEEEEEEEEEEEECSEEEECCCE
T ss_pred             ceEEEECCCChheEEcCCC-CceEEEEEEEEEEEccccCCCcccCCCceEEEEcCEEEECCCC
Confidence            8899999999999986533 4 56555542                3  36788988888875

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=83.10  E-value=1  Score=43.47  Aligned_cols=53  Identities=15%  Similarity=0.211  Sum_probs=40.3

Q ss_pred             HHcCCeEEcceeeeEEEecCCCCeEEEEEEC---Ce--EEecC-EEEEeeChhhHHHhh
Q 019274           72 RTRGCEFLDGRRVTDFIYDEERCCISDVVCG---KE--TYSAG-AVVLAVGISTLQELI  124 (343)
Q Consensus        72 ~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~---g~--~~~ad-~VV~a~p~~~~~~Ll  124 (343)
                      ++.+.+|++++.|++|..+++++++++|+..   |.  ++.|+ .||++++.-...+||
T Consensus       217 ~r~Nl~v~~~a~v~ri~~~~~~~~a~GV~~~~~~g~~~~v~A~keVILsaGa~~sp~lL  275 (577)
T 3q9t_A          217 NKPNITIVPEVHSKRLIINEADRTCKGVTVVTAAGNELNFFADREVILSQGVFETPKLL  275 (577)
T ss_dssp             SCTTEEEECSEEEEEEEEETTTTEEEEEEEEETTSCEEEEEEEEEEEECSHHHHHHHHH
T ss_pred             cCCCeEEEcCcEEEEEEEeCCCCEEEEEEEEeCCCcEEEEEeeeEEEEcccccCChHHH
Confidence            3457899999999999998311789999873   43  56784 699999988776654

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=82.12  E-value=0.86  Score=43.82  Aligned_cols=53  Identities=21%  Similarity=0.146  Sum_probs=40.6

Q ss_pred             HHcCCeEEcceeeeEEEec----CCCCeEEEEEEC---C-e--EEec-CEEEEeeChhhHHHhhh
Q 019274           72 RTRGCEFLDGRRVTDFIYD----EERCCISDVVCG---K-E--TYSA-GAVVLAVGISTLQELIK  125 (343)
Q Consensus        72 ~~~G~~i~~~~~V~~I~~~----~~~g~v~~V~~~---g-~--~~~a-d~VV~a~p~~~~~~Ll~  125 (343)
                      ++.+.+|++++.|++|..+    ++ ++++||+..   | .  ++.| +.||+++++-.+.+||.
T Consensus       219 ~r~NL~Vlt~a~V~rIl~~~~~~g~-~rA~GVe~~~~~g~~~~~v~A~kEVILsAGai~SPqlL~  282 (566)
T 3fim_B          219 SRPNLSVLINAQVTKLVNSGTTNGL-PAFRCVEYAEQEGAPTTTVCAKKEVVLSAGSVGTPILLQ  282 (566)
T ss_dssp             TCTTEEEESSCEEEEEECCEEETTE-EECCEEEEESSTTSCCEEEEEEEEEEECCHHHHHHHHHH
T ss_pred             cCCCeEEECCCEEEEEEeecCCCCC-CEEEEEEEEECCCceEEEEEeeeEEEEecCCcCChHHHH
Confidence            4568899999999999987    32 478888863   3 3  5678 57999999887776643

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=82.03  E-value=2.6  Score=36.80  Aligned_cols=54  Identities=20%  Similarity=0.146  Sum_probs=41.4

Q ss_pred             hhhHHHHHHHHHcCCeEEcceeeeEEEec--CCCCeEEEEEE-CCeEEecCEEEEeeChh
Q 019274           62 KIFEPWMDSMRTRGCEFLDGRRVTDFIYD--EERCCISDVVC-GKETYSAGAVVLAVGIS  118 (343)
Q Consensus        62 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~--~~~g~v~~V~~-~g~~~~ad~VV~a~p~~  118 (343)
                      .+.+.+.+.+++.|++++. ++|++|..+  +  +..+.|.+ +|+++++|+||+|++..
T Consensus        66 ~~~~~l~~~~~~~gv~~~~-~~v~~i~~~~~~--~~~~~v~~~~g~~~~~~~vv~AtG~~  122 (325)
T 2q7v_A           66 ELAQRMHQQAEKFGAKVEM-DEVQGVQHDATS--HPYPFTVRGYNGEYRAKAVILATGAD  122 (325)
T ss_dssp             HHHHHHHHHHHHTTCEEEE-CCEEEEEECTTS--SSCCEEEEESSCEEEEEEEEECCCEE
T ss_pred             HHHHHHHHHHHHcCCEEEe-eeEEEEEeccCC--CceEEEEECCCCEEEeCEEEECcCCC
Confidence            4677788888889999988 689999877  4  32123444 46789999999999974

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=81.53  E-value=2.4  Score=37.28  Aligned_cols=53  Identities=19%  Similarity=0.196  Sum_probs=41.2

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEE-EEC-CeEEecCEEEEeeChh
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDV-VCG-KETYSAGAVVLAVGIS  118 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V-~~~-g~~~~ad~VV~a~p~~  118 (343)
                      ..+.+.+.+.+++.|+++++++ |.+|.. +  +. +.| .++ ++++++|.||+|++..
T Consensus        71 ~~~~~~l~~~~~~~~v~~~~~~-v~~i~~-~--~~-~~v~~~~~g~~~~~d~lviAtG~~  125 (335)
T 2a87_A           71 PELMDEMREQALRFGADLRMED-VESVSL-H--GP-LKSVVTADGQTHRARAVILAMGAA  125 (335)
T ss_dssp             HHHHHHHHHHHHHTTCEEECCC-EEEEEC-S--SS-SEEEEETTSCEEEEEEEEECCCEE
T ss_pred             HHHHHHHHHHHHHcCCEEEEee-EEEEEe-C--Cc-EEEEEeCCCCEEEeCEEEECCCCC
Confidence            3467778888888899999997 999887 3  33 345 565 5689999999999974

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=81.41  E-value=2.4  Score=36.22  Aligned_cols=53  Identities=21%  Similarity=0.164  Sum_probs=40.1

Q ss_pred             hhhHHHHHHHHHc-CCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChh
Q 019274           62 KIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS  118 (343)
Q Consensus        62 ~l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~  118 (343)
                      .+.+.+.+.+++. +.+++ +++|++|..++  +. +.|.+. ++++++|.||+|++..
T Consensus        57 ~~~~~~~~~~~~~~~v~~~-~~~v~~i~~~~--~~-~~v~~~~g~~~~~d~vviAtG~~  111 (297)
T 3fbs_A           57 EIIAEARRQIERYPTIHWV-EGRVTDAKGSF--GE-FIVEIDGGRRETAGRLILAMGVT  111 (297)
T ss_dssp             HHHHHHHHHHTTCTTEEEE-ESCEEEEEEET--TE-EEEEETTSCEEEEEEEEECCCCE
T ss_pred             HHHHHHHHHHHhcCCeEEE-EeEEEEEEEcC--Ce-EEEEECCCCEEEcCEEEECCCCC
Confidence            4677777777776 45554 56999998876  44 567775 5689999999999984

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=81.09  E-value=3  Score=39.77  Aligned_cols=56  Identities=13%  Similarity=0.147  Sum_probs=41.0

Q ss_pred             hhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE-C---C--eEEecCEEEEeeChhhH-HHhh
Q 019274           63 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-G---K--ETYSAGAVVLAVGISTL-QELI  124 (343)
Q Consensus        63 l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~-~---g--~~~~ad~VV~a~p~~~~-~~Ll  124 (343)
                      +.+.|.+.+++.   |+++++|++|..++  +.|+ |++ +   |  .+++||.||.|.+..+. .+.+
T Consensus       140 l~~~L~~~a~~~---v~~~~~v~~~~~~~--~~v~-v~~~~~~~G~~~~i~a~~vVgADG~~S~vR~~l  202 (549)
T 2r0c_A          140 LAPLLAEAVGER---LRTRSRLDSFEQRD--DHVR-ATITDLRTGATRAVHARYLVACDGASSPTRKAL  202 (549)
T ss_dssp             HHHHHHHHHGGG---EECSEEEEEEEECS--SCEE-EEEEETTTCCEEEEEEEEEEECCCTTCHHHHHH
T ss_pred             HHHHHHHHHHHh---cccCcEEEEEEEeC--CEEE-EEEEECCCCCEEEEEeCEEEECCCCCcHHHHHc
Confidence            555666777665   99999999999877  4454 433 2   4  47899999999999874 3454

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=81.04  E-value=2.4  Score=43.48  Aligned_cols=49  Identities=22%  Similarity=0.331  Sum_probs=37.8

Q ss_pred             HHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC--------C--eEEecCEEEEeeCh
Q 019274           68 MDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--------K--ETYSAGAVVLAVGI  117 (343)
Q Consensus        68 ~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~--------g--~~~~ad~VV~a~p~  117 (343)
                      .+.+++.|++|++++.|++|..+++ +++.+|++.        |  +++++|.||++++.
T Consensus       323 ~~~l~~~GV~v~~~~~v~~i~~~~~-~~v~~v~~~~~~~~~~~G~~~~i~~D~Vv~a~G~  381 (965)
T 2gag_A          323 AAQAVADGVQVISGSVVVDTEADEN-GELSAIVVAELDEARELGGTQRFEADVLAVAGGF  381 (965)
T ss_dssp             HHHHHHTTCCEEETEEEEEEEECTT-SCEEEEEEEEECTTCCEEEEEEEECSEEEEECCE
T ss_pred             HHHHHhCCeEEEeCCEeEEEeccCC-CCEEEEEEEeccccCCCCceEEEEcCEEEECCCc
Confidence            5668889999999999999987412 555556542        3  47899999999985

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=80.83  E-value=2.2  Score=38.30  Aligned_cols=47  Identities=23%  Similarity=0.195  Sum_probs=36.4

Q ss_pred             HHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChh
Q 019274           67 WMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS  118 (343)
Q Consensus        67 l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~  118 (343)
                      ..+.+++.|++++++++|+.|..+.  ..   |+.+++++++|++|+|++..
T Consensus        66 ~~~~~~~~~v~~~~g~~v~~id~~~--~~---V~~~g~~~~~d~lViATGs~  112 (367)
T 1xhc_A           66 SLDWYRKRGIEIRLAEEAKLIDRGR--KV---VITEKGEVPYDTLVLATGAR  112 (367)
T ss_dssp             CHHHHHHHTEEEECSCCEEEEETTT--TE---EEESSCEEECSEEEECCCEE
T ss_pred             CHHHHHhCCcEEEECCEEEEEECCC--CE---EEECCcEEECCEEEECCCCC
Confidence            3455677899999999999997654  33   33567789999999999963

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=80.66  E-value=1.6  Score=36.41  Aligned_cols=36  Identities=22%  Similarity=0.351  Sum_probs=29.9

Q ss_pred             CCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHHHh
Q 019274          261 TSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYL  300 (343)
Q Consensus       261 ~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~~~  300 (343)
                      +.+||||.+||..  +.+  ....++.+|+.+|+.|++.+
T Consensus       196 t~~p~iya~G~~a--~~g--~~~~~~~~g~~~a~~i~~~l  231 (232)
T 2cul_A          196 KRLEGLYAVGLCV--REG--DYARMSEEGKRLAEHLLHEL  231 (232)
T ss_dssp             TTSBSEEECGGGT--SCC--CHHHHHHHHHHHHHHHHHHC
T ss_pred             cccccceeeeecc--cCc--cHHHHHHHHHHHHHHHHhhc
Confidence            5789999999997  333  55668899999999999875

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=80.38  E-value=1.6  Score=42.19  Aligned_cols=53  Identities=19%  Similarity=0.201  Sum_probs=40.3

Q ss_pred             HHcCCeEEcceeeeEEEecCCC--CeEEEEEE---CCe--EEec-CEEEEeeChhhHHHhh
Q 019274           72 RTRGCEFLDGRRVTDFIYDEER--CCISDVVC---GKE--TYSA-GAVVLAVGISTLQELI  124 (343)
Q Consensus        72 ~~~G~~i~~~~~V~~I~~~~~~--g~v~~V~~---~g~--~~~a-d~VV~a~p~~~~~~Ll  124 (343)
                      ++.+.+|++++.|++|..++++  +++++|+.   +|+  ++.| +.||+|++.-...+||
T Consensus       242 ~~~nl~i~~~~~v~~l~~~~~~~~~~~~GV~~~~~~g~~~~v~A~k~VILaaG~~~sp~lL  302 (587)
T 1gpe_A          242 QRSNLEILTGQMVGKVLFKQTASGPQAVGVNFGTNKAVNFDVFAKHEVLLAAGSAISPLIL  302 (587)
T ss_dssp             TCTTEEEEESCEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEEECSCTTTHHHHH
T ss_pred             cCCCcEEEcCCEEEEEEECCCCCCCEEEEEEEEeCCCcEEEEEecccEEEccCCCCCHHHH
Confidence            4568899999999999987421  37888875   354  5678 8999999997766654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	343
d2dw4a2	449	c.3.1.2 (A:274-654,A:764-831) Lysine-specific hist	1e-04

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 449

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (95), Expect = 1e-04
 Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 2/53 (3%)

Query: 250 PGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD-YLG 301
                 +       P LF AG+     + +     + ++GL  A R+ D +LG
Sbjct: 398 ITPGPSIPGAPQPIPRLFFAGEHTIRNYPAT-VHGALLSGLREAGRIADQFLG 449

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	343
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	98.96
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	98.7
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	98.52
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	98.42
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	98.23
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	98.03
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	97.96
d2ivda2	108	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	97.84
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	97.77
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	97.76
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	97.72
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	97.69
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	97.66
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	97.61
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	97.6
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	97.51
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	97.47
d1seza2	112	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	97.4
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	97.34
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	97.27
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	97.2
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	97.17
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	97.14
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	97.06
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	97.01
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	96.93
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	96.9
d2iida2	113	L-aminoacid oxidase {Malayan pit viper (Calloselas	96.88
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	96.84
d2dw4a3	109	Lysine-specific histone demethylase 1, LSD1 {Human	96.71
d2v5za2	112	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	96.69
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	96.62
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	96.59
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	96.56
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	96.56
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	96.51
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	96.51
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	96.46
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	96.43
d1b5qa2	112	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	96.39
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	95.84
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	94.97
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	94.9
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	94.86
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	94.78
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	94.46
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	93.9
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	93.88
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	92.24
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	91.79
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	91.35
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	90.85
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	90.85
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	90.6
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	89.86
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	89.67
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	88.76
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	88.63
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	87.62
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	86.93
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	86.29
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	85.68
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	85.08
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	83.9
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	83.37
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	82.68
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	82.21

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.96  E-value=2.1e-09  Score=90.51  Aligned_cols=64  Identities=11%  Similarity=0.139  Sum_probs=56.4

Q ss_pred             ceeEeecCCCchhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEe
Q 019274           50 FDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLA  114 (343)
Q Consensus        50 ~~~~~~~gG~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a  114 (343)
                      ..+.+|+||+ +.|+++|++.++++|++|++|++|++|..++++++|.+|+.+|++++||+||++
T Consensus       226 ~~~~~~~gG~-~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VI~~  289 (297)
T d2bcgg1         226 SPYLYPMYGL-GELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTKLGTFKAPLVIAD  289 (297)
T ss_dssp             CSEEEETTCT-THHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEETTEEEECSCEEEC
T ss_pred             CcceeccCcH-HHHHHHHHHHHHhcCCEEEeCCEeeEEEEECCCCEEEEEEcCCEEEECCEEEEC
Confidence            4567899996 569999999999999999999999999887553788888888999999999987

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=1.5e-07  Score=83.01  Aligned_cols=108  Identities=16%  Similarity=-0.026  Sum_probs=75.5

Q ss_pred             HHHHHHhHHHHHHhhhcCCcccccHHHHHHHHHHHH-----HhcCCCceeEeecCCCchhhhHHHHHHHHHcCCeEEcce
Q 019274            8 ERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFII-----LAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGR   82 (343)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~-----~~~~~~~~~~~~~gG~~~~l~~~l~~~l~~~G~~i~~~~   82 (343)
                      .+....++..+........+...++..++..+....     ...........+.+++ ..+++.++   ++.|++|++|+
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~---~~~g~~i~~~~  228 (383)
T d2v5za1         153 TESAKQLATLFVNLCVTAETHEVSALWFLWYVKQCGGTTRIISTTNGGQERKFVGGS-GQVSERIM---DLLGDRVKLER  228 (383)
T ss_dssp             SHHHHHHHHHHHHHHHSSCTTTSBHHHHHHHHHTTTCHHHHHCSTTSTTSEEETTCT-HHHHHHHH---HHHGGGEEESC
T ss_pred             chHHHHHHHHhhhhhhccccchhhHHHHHHHHHhhcccccccccccCcceeeeccch-hHHHHHHH---HHcCCeEEecC
Confidence            345566777888888888889998887766554221     0111122234456774 56777775   45699999999


Q ss_pred             eeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhHHH
Q 019274           83 RVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQE  122 (343)
Q Consensus        83 ~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~~~  122 (343)
                      +|++|..++  ++| .|++. |++++||+||+|+|+..+.+
T Consensus       229 ~v~~I~~~~--~~v-~v~~~~g~~~~ad~vI~a~p~~~~~~  266 (383)
T d2v5za1         229 PVIYIDQTR--ENV-LVETLNHEMYEAKYVISAIPPTLGMK  266 (383)
T ss_dssp             CEEEEECSS--SSE-EEEETTSCEEEESEEEECSCGGGGGG
T ss_pred             cceEEEecC--CeE-EEEECCCCEEECCEEEECCCHHHHhh
Confidence            999999887  555 47775 67899999999999865543

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=98.42  E-value=1.3e-06  Score=74.78  Aligned_cols=115  Identities=19%  Similarity=0.148  Sum_probs=76.3

Q ss_pred             CHHHHHHhHHHHHHhhhcCCcccccHHHHHHHHHHHHH---------------hc----------CCCceeEeecCCCch
Q 019274            7 SERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIIL---------------AH----------QKNFDLVWCRGTLRE   61 (343)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~---------------~~----------~~~~~~~~~~gG~~~   61 (343)
                      ..........++....+..+++..+.......+.....               ..          ........+.||+ +
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~  222 (347)
T d2ivda1         144 GHRATQVLLDAVQTGIYAGDVEQLSVAATFPMLVKMEREHRSLILGAIRAQKAQRQAALPAGTAPKLSGALSTFDGGL-Q  222 (347)
T ss_dssp             CHHHHHHTHHHHHHHHHCCCTTTBBHHHHCHHHHHHHHHHSSHHHHHHHHHHHHTCC----CCSCCCCCCEEEETTCT-H
T ss_pred             hcchhccccchhhhhhhccccchhhHHHHHHHHHHhhhhccchhhhhhhccchhccccccccccccccCcccccCCch-H
Confidence            34555666678888888888877776655444332110               00          0012234567885 5


Q ss_pred             hhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE-CC--eEEecCEEEEeeChhhHHHhhhhh
Q 019274           62 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK--ETYSAGAVVLAVGISTLQELIKNS  127 (343)
Q Consensus        62 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~-~g--~~~~ad~VV~a~p~~~~~~Ll~~~  127 (343)
                      .++++|.+.+   |++|++|++|++|..++  +++..+.. ++  ++++||+||+|+|++.+.+|+++.
T Consensus       223 ~~~~~l~~~~---g~~i~~~~~V~~I~~~~--~~~~v~~~~~~~~~~~~ad~VV~a~p~~~~~~Ll~~~  286 (347)
T d2ivda1         223 VLIDALAASL---GDAAHVGARVEGLARED--GGWRLIIEEHGRRAELSVAQVVLAAPAHATAKLLRPL  286 (347)
T ss_dssp             HHHHHHHHHH---GGGEESSEEEEEEECC----CCEEEEEETTEEEEEECSEEEECSCHHHHHHHHTTT
T ss_pred             HHHHHHHHHh---hcccccCCEEEEEEEeC--CeEEEEEEcCCeEEEEECCEEEECCCHHHHHHhccCC
Confidence            6888877654   89999999999999887  44432222 33  478999999999999999998764

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=3.8e-07  Score=79.86  Aligned_cols=46  Identities=22%  Similarity=0.350  Sum_probs=35.5

Q ss_pred             CCCCCCCCCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHHHh
Q 019274          254 KYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYL  300 (343)
Q Consensus       254 ~~~p~~~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~~~  300 (343)
                      ..++...++++||||||++++++++ ++|+||+.||++||++|++.+
T Consensus       402 ~~~~~~~~~~~~l~fAGe~t~~~~~-g~~~GA~~SG~~aA~~Il~~~  447 (449)
T d2dw4a2         402 PSIPGAPQPIPRLFFAGEHTIRNYP-ATVHGALLSGLREAGRIADQF  447 (449)
T ss_dssp             --------CCCCEEECSGGGCTTSC-SSHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhcCCCCCEEEEcCCcCCCCc-eehHHHHHHHHHHHHHHHHHh
Confidence            3456667889999999999998888 699999999999999999875

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=98.03  E-value=5.6e-06  Score=71.42  Aligned_cols=58  Identities=14%  Similarity=0.156  Sum_probs=52.9

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhhH
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL  120 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~~  120 (343)
                      ..++.+|.+.+++.|++|+.+++|++|..++  +++++|++++++++||+||+|+++++-
T Consensus       148 ~~l~~~l~~~a~~~gv~i~~~~~V~~i~~~~--~~v~~V~T~~g~i~a~~VV~aaG~~s~  205 (305)
T d1pj5a2         148 ARAVQLLIKRTESAGVTYRGSTTVTGIEQSG--GRVTGVQTADGVIPADIVVSCAGFWGA  205 (305)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEEET--TEEEEEEETTEEEECSEEEECCGGGHH
T ss_pred             hhhhhhHHhhhhcccccccCCceEEEEEEeC--CEEEEEeccceeEECCEEEEecchhHH
Confidence            4588889999999999999999999999998  889999999889999999999999863

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.96  E-value=3.8e-05  Score=69.89  Aligned_cols=110  Identities=9%  Similarity=-0.002  Sum_probs=81.8

Q ss_pred             CccCCCCHHHHHHhHHHHHHhhhcCCcccccHHHHHHHHHHHHH--hcCCCceeEeecCCCchhhhHHHHHHHHHcCCeE
Q 019274            1 MIQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIIL--AHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEF   78 (343)
Q Consensus         1 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~--~~~~~~~~~~~~gG~~~~l~~~l~~~l~~~G~~i   78 (343)
                      |+++++++...+.+...++  +  ...++.....++..++.++-  +..+.+.+.||..|+++ |++++.+...-.|+..
T Consensus       319 l~~~~l~~~~~~~i~~aia--l--~~~~~~~~~~~l~ri~~yl~Slg~yG~spflyp~YG~gE-ipQ~FcR~~AV~Gg~Y  393 (491)
T d1vg0a1         319 LKTQKLTPNLQYFVLHSIA--M--TSETTSCTVDGLKATKKFLQCLGRYGNTPFLFPLYGQGE-LPQCFCRMCAVFGGIY  393 (491)
T ss_dssp             HTTSSSCHHHHHHHHHHTT--C----CCSCBHHHHHHHHHHHHHHTTSSSSSSEEEETTCTTH-HHHHHHHHHHHTTCEE
T ss_pred             HHHcCCChHHHHHHHhhee--c--cCCCCccHHHHHHHHHHHHHHHHhhCCCCeEeecCCcch-HHHHHHHHHHhcCcEE
Confidence            4577888888887654333  2  22344566677777776642  34445678899988765 9999999998899999


Q ss_pred             EcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEee
Q 019274           79 LDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAV  115 (343)
Q Consensus        79 ~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~  115 (343)
                      .||++|++|..+.+++++.+|+.+ |+++.++.||+.-
T Consensus       394 ~L~~~i~~i~~d~e~~~~~~v~~~~g~~i~~k~vI~~p  431 (491)
T d1vg0a1         394 CLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIED  431 (491)
T ss_dssp             ESSCCEEEEEEETTTCCEEEEEETTSCEEECSEEEEEG
T ss_pred             EcCCccceEEEecCCCeEEEEEccCCcEEecCeEEECH
Confidence            999999999986443778888887 7899999998753

>d2ivda2 d.16.1.5 (A:307-414) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: L-aminoacid/polyamine oxidase
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=97.84  E-value=8.7e-05  Score=53.41  Aligned_cols=102  Identities=12%  Similarity=0.074  Sum_probs=63.7

Q ss_pred             ccceEEEEEEeccCCCC-CCCcceeecCCC--CccceEeeccccccccCCCCCeEEEEEeeC--CCCCCCCCHHHHHHHH
Q 019274          143 SIDVVSVKLWFDKKVTV-PNVSNACSGFGD--SLAWTFFDLNKIYDEHKDDSATVIQADFYH--ANELMPLKDDQVVAKA  217 (343)
Q Consensus       143 ~~~~~~v~l~~~~~~~~-~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~e~~~~~  217 (343)
                      |.++++|+|+|++.... +..++.+.+...  ...-+.|+.+ ..+...+++..++.+.+..  ..+....+++++.+.+
T Consensus         2 Ya~vavV~l~~~~~~~~~~~GfG~LVP~~e~~~~lg~~f~S~-~fp~r~p~~~~llrv~~Gg~~~~~~~~~~d~~l~~~a   80 (108)
T d2ivda2           2 YAPIAVVHLGFDAGTLPAPDGFGFLVPAEEQRRMLGAIHAST-TFPFRAEGGRVLYSCMVGGARQPGLVEQDEDALAALA   80 (108)
T ss_dssp             BCCEEEEEEEECTTSSCCCCSSEEECCGGGCCSCCEEEEHHH-HCGGGBSTTCEEEEEEEECTTCGGGGGSCHHHHHHHH
T ss_pred             CCCEEEEEEEEcHHHCCCCCceEEEccCCCCCeEEEEEEEcc-ccccccCCCCEEEEEEeCCCCCcccccCCHHHHHHHH
Confidence            78899999999876432 223444443221  1112245533 3333332344555443332  2345567899999999


Q ss_pred             HHHHhhhcccCCCCceeeeEEEecCCCccc
Q 019274          218 VSYLSKCIKDFSTATVMDHKIRRFPKSLTH  247 (343)
Q Consensus       218 ~~~L~~~~p~~~~~~~~~~~~~r~~~~~~~  247 (343)
                      +++|+++++- .. +++...+.||+.++|+
T Consensus        81 ~~dL~~~lgi-~~-~P~~~~v~rw~~aiPQ  108 (108)
T d2ivda2          81 REELKALAGV-TA-RPSFTRVFRWPLGIPQ  108 (108)
T ss_dssp             HHHHHHHHCC-CS-CCSEEEEEEESSCCBC
T ss_pred             HHHHHHHhCC-CC-CCcEEEeeECCCCcCc
Confidence            9999999964 33 6888899999999874

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=97.77  E-value=2.1e-05  Score=68.14  Aligned_cols=67  Identities=7%  Similarity=-0.012  Sum_probs=49.8

Q ss_pred             eeEeecCCCchhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEE-EEEC---CeEEecCEEEEeeChhhHHHh
Q 019274           51 DLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISD-VVCG---KETYSAGAVVLAVGISTLQEL  123 (343)
Q Consensus        51 ~~~~~~gG~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~-V~~~---g~~~~ad~VV~a~p~~~~~~L  123 (343)
                      .+..+.+|+ ..++++|+   ++.|++|+++++|++|..++  +++.. +...   +++++||+||+|+|+..+.++
T Consensus       229 ~~~~~~~~~-~~l~~~l~---~~~g~~i~~~~~V~~I~~~~--~~v~v~~~~~~~~~~~~~aD~VI~A~p~~~l~~i  299 (370)
T d2iida1         229 RFDEIVDGM-DKLPTAMY---RDIQDKVHFNAQVIKIQQND--QKVTVVYETLSKETPSVTADYVIVCTTSRAVRLI  299 (370)
T ss_dssp             CEEEETTCT-THHHHHHH---HHTGGGEESSCEEEEEEECS--SCEEEEEECSSSCCCEEEESEEEECSCHHHHTTS
T ss_pred             ccccchhhH-HHHHHHHH---HhcCCccccCceEEEEEEeC--CeEEEEEEecCCCeEEEEeeEEEecCCHHHHhhC
Confidence            345677885 56888775   45689999999999999988  55432 2222   357899999999999887654

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=97.76  E-value=2.7e-05  Score=64.89  Aligned_cols=66  Identities=15%  Similarity=0.260  Sum_probs=55.0

Q ss_pred             eecCCCchhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhHH
Q 019274           54 WCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQ  121 (343)
Q Consensus        54 ~~~gG~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~~  121 (343)
                      +|.......+.+.|.+.+++.|++|+++++|++|..++  +++.+|.++ +++++||.||+|++.....
T Consensus       103 ~~~~~~~~~i~~~L~~~~~~~gv~i~~~~~v~~i~~~~--~~~~~v~~~~g~~i~a~~vI~AtGg~S~p  169 (251)
T d2i0za1         103 FPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYEN--GQTKAVILQTGEVLETNHVVIAVGGKSVP  169 (251)
T ss_dssp             EETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEET--TEEEEEEETTCCEEECSCEEECCCCSSSG
T ss_pred             ecccccHHHHHHHHHHHHHHcCCcccCCcEEEEEEEEC--CEEEEEEeCCCCeEecCeEEEccCCcccc
Confidence            44433346689999999999999999999999999988  777788876 6789999999999986543

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=97.72  E-value=5.8e-05  Score=56.66  Aligned_cols=57  Identities=18%  Similarity=0.331  Sum_probs=47.3

Q ss_pred             chhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeC
Q 019274           60 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVG  116 (343)
Q Consensus        60 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p  116 (343)
                      .+.+.+.+.+.++++|+++++|+.|++|....+++++..|.++ |++++||.||+|++
T Consensus        76 ~~~~~~~~~~~~~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~vi~a~G  133 (133)
T d1q1ra2          76 APPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIG  133 (133)
T ss_dssp             CHHHHHHHHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCC
T ss_pred             chhhhhhhhhcccccccEEEeCCeEEEEEEeCCCceEEEEECCCCCEEECCEEEEeeC
Confidence            4557778888899999999999999999876543667778887 67899999999975

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=97.69  E-value=3.4e-05  Score=65.47  Aligned_cols=62  Identities=19%  Similarity=0.372  Sum_probs=53.0

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhhHHHhhhh
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKN  126 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~~~~Ll~~  126 (343)
                      ..++.+|.+.+++.|++|+++++|++|..++  ++ +.|++++++++||+||+|+++++-. |++.
T Consensus       150 ~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~--~~-v~V~t~~g~i~a~~VViAaG~~s~~-l~~~  211 (281)
T d2gf3a1         150 ENCIRAYRELAEARGAKVLTHTRVEDFDISP--DS-VKIETANGSYTADKLIVSMGAWNSK-LLSK  211 (281)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEECS--SC-EEEEETTEEEEEEEEEECCGGGHHH-HGGG
T ss_pred             cccccccccccccccccccCCcEEEEEEEEC--CE-EEEEECCcEEEcCEEEECCCCcchh-hHHh
Confidence            4688999999999999999999999999988  55 4688988889999999999987653 5443

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=97.66  E-value=5.7e-05  Score=55.27  Aligned_cols=57  Identities=14%  Similarity=0.218  Sum_probs=47.7

Q ss_pred             CCchhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeC
Q 019274           58 TLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVG  116 (343)
Q Consensus        58 G~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p  116 (343)
                      ++...+.+.+.+.++++|++|++|+.|++|..+++ |. ..|.++ |++++||.||+|++
T Consensus        59 ~~d~~~~~~~~~~l~~~GI~v~~~~~v~~i~~~~~-g~-~~v~~~~g~~i~~D~Vi~a~G  116 (117)
T d1feca2          59 GFDSELRKQLTEQLRANGINVRTHENPAKVTKNAD-GT-RHVVFESGAEADYDVVMLAIG  116 (117)
T ss_dssp             TSCHHHHHHHHHHHHHTTEEEEETCCEEEEEECTT-SC-EEEEETTSCEEEESEEEECSC
T ss_pred             cccchhhHHHHHHHhhCcEEEEcCCEEEEEEECCC-CE-EEEEECCCCEEEcCEEEEecC
Confidence            44566899999999999999999999999987764 54 457766 77899999999985

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=97.61  E-value=4.1e-05  Score=64.67  Aligned_cols=57  Identities=16%  Similarity=0.116  Sum_probs=50.2

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhhH
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL  120 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~~  120 (343)
                      ..+++.|.+.++++|++|+.+++|++|..++   ++++|++++++++||.||+|+++++-
T Consensus       151 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~---~~~~V~t~~g~i~a~~vV~AaG~~s~  207 (276)
T d1ryia1         151 YFVCKAYVKAAKMLGAEIFEHTPVLHVERDG---EALFIKTPSGDVWANHVVVASGVWSG  207 (276)
T ss_dssp             HHHHHHHHHHHHHTTCEEETTCCCCEEECSS---SSEEEEETTEEEEEEEEEECCGGGTH
T ss_pred             ccchhHHHHHHHHcCCEEecceEEEeEEeec---ceEEEecCCeEEEcCEEEECCCccHH
Confidence            4588899999999999999999999998765   35789999889999999999999864

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=97.60  E-value=8.4e-05  Score=54.37  Aligned_cols=56  Identities=11%  Similarity=0.173  Sum_probs=46.9

Q ss_pred             CCchhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEee
Q 019274           58 TLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAV  115 (343)
Q Consensus        58 G~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~  115 (343)
                      ++...+.+.+.+.++++|++|++|++|++|+..++ +++ .|.++ |++++||.||+|+
T Consensus        61 ~~d~~~~~~l~~~l~~~GV~v~~~~~v~~ie~~~~-~~~-~v~~~~G~~i~~D~Vi~AI  117 (117)
T d1aoga2          61 GFDHTLREELTKQLTANGIQILTKENPAKVELNAD-GSK-SVTFESGKKMDFDLVMMAI  117 (117)
T ss_dssp             TSCHHHHHHHHHHHHHTTCEEEESCCEEEEEECTT-SCE-EEEETTSCEEEESEEEECS
T ss_pred             ccchHHHHHHHHHHHhcCcEEEcCCEEEEEEEcCC-CeE-EEEECCCcEEEeCEEEEeC
Confidence            44567889999999999999999999999987664 554 57776 6789999999985

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=0.00011  Score=55.26  Aligned_cols=55  Identities=18%  Similarity=0.160  Sum_probs=46.5

Q ss_pred             CchhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeC
Q 019274           59 LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVG  116 (343)
Q Consensus        59 ~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p  116 (343)
                      +...+.+.+.+.++++|+++++|+.|++|..++  +++ .|+++ |+++.||.||+|++
T Consensus        81 ~~~~~~~~~~~~l~~~GV~~~~~~~V~~i~~~~--~~~-~v~l~~G~~i~aD~Vi~A~G  136 (137)
T d1m6ia2          81 LPEYLSNWTMEKVRREGVKVMPNAIVQSVGVSS--GKL-LIKLKDGRKVETDHIVAAVG  136 (137)
T ss_dssp             SCHHHHHHHHHHHHTTTCEEECSCCEEEEEEET--TEE-EEEETTSCEEEESEEEECCC
T ss_pred             CCHHHHHHHHHHHHhCCcEEEeCCEEEEEEecC--CEE-EEEECCCCEEECCEEEEeec
Confidence            345577888899999999999999999998876  654 47776 67899999999986

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=97.47  E-value=0.00013  Score=53.23  Aligned_cols=56  Identities=11%  Similarity=0.208  Sum_probs=46.8

Q ss_pred             CchhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeC
Q 019274           59 LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVG  116 (343)
Q Consensus        59 ~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p  116 (343)
                      +...+.+.+.+.++++|+++++++.|++|..+++ +.+ .|.+. |+++++|.||+|++
T Consensus        60 ~d~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~-~~~-~v~~~~g~~~~~D~vi~a~G  116 (116)
T d1gesa2          60 FDPMISETLVEVMNAEGPQLHTNAIPKAVVKNTD-GSL-TLELEDGRSETVDCLIWAIG  116 (116)
T ss_dssp             SCHHHHHHHHHHHHHHSCEEECSCCEEEEEECTT-SCE-EEEETTSCEEEESEEEECSC
T ss_pred             cchhhHHHHHHHHHHCCCEEEeCCEEEEEEEcCC-cEE-EEEECCCCEEEcCEEEEecC
Confidence            3456889999999999999999999999988764 554 47676 67899999999975

>d1seza2 d.16.1.5 (A:330-441) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: L-aminoacid/polyamine oxidase
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=97.40  E-value=0.00027  Score=51.01  Aligned_cols=102  Identities=9%  Similarity=0.006  Sum_probs=62.2

Q ss_pred             cccceEEEEEEeccCCCC--CCCcceeecCCC-----CccceEeeccccccccCCCCCeEEEEEee--CCCCCCCCCHHH
Q 019274          142 ASIDVVSVKLWFDKKVTV--PNVSNACSGFGD-----SLAWTFFDLNKIYDEHKDDSATVIQADFY--HANELMPLKDDQ  212 (343)
Q Consensus       142 ~~~~~~~v~l~~~~~~~~--~~~~~~~~~~~~-----~~~~~~~d~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~e  212 (343)
                      +|.++.+|+++|++....  ...++.+.....     ...-++|+.+ ..+...+++..++.+.+.  ...++.+.++++
T Consensus         1 ~Ya~va~V~l~~~~~~~~~~~~GfG~LVP~~e~~~g~~~lg~~f~S~-~fp~r~p~~~~ll~~~~Gg~~~~~~~~~~d~~   79 (112)
T d1seza2           1 DYVPLSVVITTFKRENVKYPLEGFGVLVPSKEQQHGLKTLGTLFSSM-MFPDRAPNNVYLYTTFVGGSRNRELAKASRTE   79 (112)
T ss_dssp             CEEEEEEEEEEEEGGGBSSCCCSSEEECCGGGGGGTCCSSEEEEHHH-HCGGGSCTTEEEEEEEEESTTCGGGTTCCHHH
T ss_pred             CCCcEEEEEEEEchHHcCCCCCceEEEeCCcccCCCceEEEEEEecc-cCCCcCCCCcEEEEEEECCCCCcccccCCHHH
Confidence            378889999999876431  123444442211     1112245532 333333233344443332  223456789999


Q ss_pred             HHHHHHHHHhhhcccCCCCceeeeEEEecCCCcc
Q 019274          213 VVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLT  246 (343)
Q Consensus       213 ~~~~~~~~L~~~~p~~~~~~~~~~~~~r~~~~~~  246 (343)
                      +.+.++++|+++++--.  +++...+.||+.++|
T Consensus        80 l~~~a~~dl~~~lgi~~--~P~~~~v~rw~~aiP  111 (112)
T d1seza2          80 LKEIVTSDLKQLLGAEG--EPTYVNHLYWSKAFP  111 (112)
T ss_dssp             HHHHHHHHHHHHHCBCS--CCSSEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHhCCCC--CccEEEEEECCcccC
Confidence            99999999999996533  688888999998876

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=97.34  E-value=0.00031  Score=51.44  Aligned_cols=57  Identities=23%  Similarity=0.310  Sum_probs=45.6

Q ss_pred             CchhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE---C-CeEEecCEEEEeeC
Q 019274           59 LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---G-KETYSAGAVVLAVG  116 (343)
Q Consensus        59 ~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~---~-g~~~~ad~VV~a~p  116 (343)
                      +...+.+.+.+.+++.|.++++++.|++|..+++ +++..+..   + +++++||.||+|++
T Consensus        61 ~d~~~~~~~~~~l~~~gI~v~~~~~v~~i~~~~~-~~~~~~~~~~~~~~~~i~~D~Vi~a~G  121 (121)
T d1mo9a2          61 KDNETRAYVLDRMKEQGMEIISGSNVTRIEEDAN-GRVQAVVAMTPNGEMRIETDFVFLGLG  121 (121)
T ss_dssp             CSHHHHHHHHHHHHHTTCEEESSCEEEEEEECTT-SBEEEEEEEETTEEEEEECSCEEECCC
T ss_pred             cccchhhhhhhhhhccccEEEcCCEEEEEEecCC-ceEEEEEEEeCCCCEEEEcCEEEEEEC
Confidence            3456788899999999999999999999998775 66554443   2 35789999999975

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.27  E-value=0.00024  Score=52.30  Aligned_cols=53  Identities=25%  Similarity=0.351  Sum_probs=45.0

Q ss_pred             chhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEee
Q 019274           60 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAV  115 (343)
Q Consensus        60 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~  115 (343)
                      ...+.+.+.+.++++|+++++++.|++|..+   +++..|..+|++++||.||+|+
T Consensus        71 d~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~---~~~~~v~~dg~~i~~D~vi~aI  123 (123)
T d1nhpa2          71 DKEFTDVLTEEMEANNITIATGETVERYEGD---GRVQKVVTDKNAYDADLVVVAV  123 (123)
T ss_dssp             CHHHHHHHHHHHHTTTEEEEESCCEEEEECS---SBCCEEEESSCEEECSEEEECS
T ss_pred             chhhHHHHHHHhhcCCeEEEeCceEEEEEcC---CCEEEEEeCCCEEECCEEEEEC
Confidence            4557888889999999999999999999753   4566677788899999999985

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=97.20  E-value=0.0005  Score=50.19  Aligned_cols=56  Identities=20%  Similarity=0.281  Sum_probs=44.7

Q ss_pred             CCchhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE--CC--eEEecCEEEEeeC
Q 019274           58 TLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GK--ETYSAGAVVLAVG  116 (343)
Q Consensus        58 G~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~--~g--~~~~ad~VV~a~p  116 (343)
                      ++...+.+.+.+.++++|.+++++++|++|..++  +.+. |++  .+  ++++||.|++|++
T Consensus        60 ~~d~ei~~~l~~~l~~~Gv~i~~~~~v~~i~~~~--~~v~-v~~~~~~~~~~~~~D~vlvAvG  119 (119)
T d3lada2          60 AVDEQVAKEAQKILTKQGLKILLGARVTGTEVKN--KQVT-VKFVDAEGEKSQAFDKLIVAVG  119 (119)
T ss_dssp             TSCHHHHHHHHHHHHHTTEEEEETCEEEEEEECS--SCEE-EEEESSSEEEEEEESEEEECSC
T ss_pred             cccchhHHHHHHHHHhcCceeecCcEEEEEEEeC--CEEE-EEEEECCCCEEEECCEEEEeeC
Confidence            4456689999999999999999999999999887  3332 443  22  4789999999975

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.17  E-value=0.00053  Score=50.29  Aligned_cols=56  Identities=13%  Similarity=0.262  Sum_probs=44.2

Q ss_pred             CCchhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC----C--eEEecCEEEEe
Q 019274           58 TLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG----K--ETYSAGAVVLA  114 (343)
Q Consensus        58 G~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~----g--~~~~ad~VV~a  114 (343)
                      .+...+.+.+.+.++++|++|++|++|+++...++ +....++..    +  ++++||.|++|
T Consensus        61 ~~d~ei~~~l~~~l~~~GV~i~~~~~v~~v~~~~~-~~~v~~~~~~~~~~~~~~ie~D~vlvA  122 (122)
T d1v59a2          61 SMDGEVAKATQKFLKKQGLDFKLSTKVISAKRNDD-KNVVEIVVEDTKTNKQENLEAEVLLVA  122 (122)
T ss_dssp             SSCHHHHHHHHHHHHHTTCEEECSEEEEEEEEETT-TTEEEEEEEETTTTEEEEEEESEEEEC
T ss_pred             hhhhhhHHHHHHHHHhccceEEeCCEEEEEEEeCC-CcEEEEEEEeCCCCCeEEEEeCEEEEC
Confidence            44566899999999999999999999999998775 544444442    2  47899999986

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.14  E-value=0.00065  Score=49.41  Aligned_cols=56  Identities=11%  Similarity=0.170  Sum_probs=45.4

Q ss_pred             CCchhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEE-ecCEEEEee
Q 019274           58 TLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETY-SAGAVVLAV  115 (343)
Q Consensus        58 G~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~-~ad~VV~a~  115 (343)
                      ++...+.+.+.+.++++|+++++++.|++|...++ +++ .|+++ |+++ .+|.||+|+
T Consensus        60 ~~d~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~-~~~-~v~~~~G~~~~~~D~Vi~AI  117 (117)
T d1onfa2          60 KFDESVINVLENDMKKNNINIVTFADVVEIKKVSD-KNL-SIHLSDGRIYEHFDHVIYCV  117 (117)
T ss_dssp             TSCHHHHHHHHHHHHHTTCEEECSCCEEEEEESST-TCE-EEEETTSCEEEEESEEEECC
T ss_pred             cccHHHHHHHHHHHHhCCCEEEECCEEEEEEEcCC-CeE-EEEECCCCEEEeCCEEEEeC
Confidence            44567899999999999999999999999987765 654 57666 6666 479999985

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=97.06  E-value=0.00054  Score=56.93  Aligned_cols=67  Identities=13%  Similarity=0.192  Sum_probs=51.6

Q ss_pred             eecCCCchhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEE-EEEECCeEEecCEEEEeeChhhHH
Q 019274           54 WCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCIS-DVVCGKETYSAGAVVLAVGISTLQ  121 (343)
Q Consensus        54 ~~~gG~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~-~V~~~g~~~~ad~VV~a~p~~~~~  121 (343)
                      ++... .+.+.+.|.+.+++.|++|+++++|++|...++...+. .+..++++++||+||+|++.....
T Consensus       103 ~~~~~-a~~i~~~L~~~~~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~a~~VIiAtGG~S~p  170 (253)
T d2gqfa1         103 FCDEG-AEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCKNLIVATGGLSMP  170 (253)
T ss_dssp             EETTC-THHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTEEEEESEEEECCCCSSCG
T ss_pred             ccccc-hhHHHHHHHHHHHHcCCCeecCceEEEEEeecCCceeEEEEecCCEEEEeCEEEEcCCccccc
Confidence            44444 56799999999999999999999999998866412222 345567899999999999975543

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=97.01  E-value=0.0011  Score=48.47  Aligned_cols=57  Identities=16%  Similarity=0.165  Sum_probs=44.4

Q ss_pred             CCchhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC--C--eEEecCEEEEee
Q 019274           58 TLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--K--ETYSAGAVVLAV  115 (343)
Q Consensus        58 G~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~--g--~~~~ad~VV~a~  115 (343)
                      ++...+.+.+.+.+++.|++|++|+.|++|+.+++ +....+...  |  .+++||.|++|.
T Consensus        63 ~~d~~~~~~l~~~l~~~GI~i~~~~~v~~i~~~~~-~~~v~~~~~~~g~~~~i~~D~vLvAA  123 (123)
T d1dxla2          63 TMDAEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGD-GVKLTVEPSAGGEQTIIEADVVLVSA  123 (123)
T ss_dssp             TSCHHHHHHHHHHHHHSSCCEECSEEEEEEECSSS-SEEEEEEESSSCCCEEEEESEEECCC
T ss_pred             hhhhcchhhhhhhhhcccceEEcCCceEEEEEccC-eEEEEEEECCCCeEEEEEcCEEEEcC
Confidence            44567899999999999999999999999998774 533344443  2  358999999874

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.93  E-value=0.0019  Score=46.68  Aligned_cols=56  Identities=11%  Similarity=0.121  Sum_probs=42.0

Q ss_pred             CCchhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECC--eEEecCEEEEe
Q 019274           58 TLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGK--ETYSAGAVVLA  114 (343)
Q Consensus        58 G~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g--~~~~ad~VV~a  114 (343)
                      ++...+.+.+.+.++++|++|++++.|++|...++ +....+..+|  .+++||.||++
T Consensus        60 ~~d~~~~~~l~~~l~~~GI~i~~~~~v~~i~~~~~-~~~v~~~~~g~~~~i~~D~Vlvs  117 (117)
T d1ebda2          60 GFEKQMAAIIKKRLKKKGVEVVTNALAKGAEERED-GVTVTYEANGETKTIDADYVLVT  117 (117)
T ss_dssp             TSCHHHHHHHHHHHHHTTCEEEESEEEEEEEEETT-EEEEEEEETTEEEEEEESEEEEC
T ss_pred             cccchhHHHHHHHHHhcCCEEEcCCEEEEEEEcCC-EEEEEEEeCCCEEEEEeEEEEEC
Confidence            44455889999999999999999999999998773 3222222334  46899999874

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=96.90  E-value=0.0012  Score=56.30  Aligned_cols=58  Identities=19%  Similarity=0.247  Sum_probs=48.9

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC---Ce--EEecCEEEEeeChhh
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG---KE--TYSAGAVVLAVGIST  119 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~---g~--~~~ad~VV~a~p~~~  119 (343)
                      ..+++.+.+.+++.|++|+++++|++|..+++ |+|.+|.+.   ++  ++.|+.||+|++...
T Consensus       145 ~~~~~~l~~~a~~~gv~i~~~~~v~~li~~~~-G~V~Gv~~~~~~~~~~~i~Ak~VVlAtGG~~  207 (308)
T d1y0pa2         145 AHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDK-GTVKGILVKGMYKGYYWVKADAVILATGGFA  207 (308)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSEEEEEEEECTT-SCEEEEEEEETTTEEEEEECSEEEECCCCCT
T ss_pred             HHHHHHHHHHHHhccceEEEeeccchhhhhcc-cccccccccccccceeEeecCeEEEccCccc
Confidence            34788889999999999999999999988765 889998774   32  678999999999754

>d2iida2 d.16.1.5 (A:320-432) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: L-aminoacid/polyamine oxidase
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=96.88  E-value=0.0014  Score=46.94  Aligned_cols=97  Identities=12%  Similarity=-0.038  Sum_probs=56.0

Q ss_pred             ccceEEEEEEeccCCCCCCCc-ceeecCCCCccceEeeccccccccCCCCCeEEEEEee--CCCCCCCCCHHHHHHHHHH
Q 019274          143 SIDVVSVKLWFDKKVTVPNVS-NACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFY--HANELMPLKDDQVVAKAVS  219 (343)
Q Consensus       143 ~~~~~~v~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~e~~~~~~~  219 (343)
                      |.++.++.+.|++++|.+... ......+......++....     ...+..++.+...  .+..+..++++++++.+++
T Consensus         2 y~~~~Kv~l~f~~~FW~~~g~~~~~~~td~~~~~~~~~~~~-----~~~~~~vL~~~~~g~~a~~~~~l~~e~~~~~~l~   76 (113)
T d2iida2           2 YRSGTKIFLTCTTKFWEDDGIHGGKSTTDLPSRFIYYPNHN-----FTNGVGVIIAYGIGDDANFFQALDFKDCADIVFN   76 (113)
T ss_dssp             EECEEEEEEEESSCGGGGGTCCSSEEEESSTTCEEECCSSC-----CTTSCEEEEEEEEHHHHHTTTTSCHHHHHHHHHH
T ss_pred             CccEEEEEEEcCCCCCCCcCCEeeEEEeCCCceEEEeCCCC-----CCCCceEEEEEeCCchhHHHHcCCHHHHHHHHHH
Confidence            567889999999999954321 1111112122221121111     1123445543222  3456778899999999999


Q ss_pred             HHhhhcccCCCC---ceeeeEEEecCCC
Q 019274          220 YLSKCIKDFSTA---TVMDHKIRRFPKS  244 (343)
Q Consensus       220 ~L~~~~p~~~~~---~~~~~~~~r~~~~  244 (343)
                      .|++++|.....   .++...+.+|...
T Consensus        77 ~L~~~~~~~~~~~~~~~~~~~~~~W~~d  104 (113)
T d2iida2          77 DLSLIHQLPKKDIQSFCYPSVIQKWSLD  104 (113)
T ss_dssp             HHHHHHTCCHHHHHHHEEEEEEEEGGGC
T ss_pred             HHHHHcCCcccccccccCeEEEeecCCC
Confidence            999999975431   2345556778543

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=96.84  E-value=0.001  Score=57.20  Aligned_cols=59  Identities=22%  Similarity=0.248  Sum_probs=49.3

Q ss_pred             chhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC---Ce--EEecCEEEEeeChhh
Q 019274           60 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG---KE--TYSAGAVVLAVGIST  119 (343)
Q Consensus        60 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~---g~--~~~ad~VV~a~p~~~  119 (343)
                      ...+++.|.+.+.+.|++|+++++|++|..+++ |+|.+|...   ++  ++.|+.||+|++...
T Consensus       151 ~~~~~~~l~~~a~~~gv~i~~~t~v~~li~d~~-G~V~Gv~~~~~~~~~~~i~Ak~VIlAtGG~~  214 (322)
T d1d4ca2         151 GAHVAQVLWDNAVKRGTDIRLNSRVVRILEDAS-GKVTGVLVKGEYTGYYVIKADAVVIAAGGFA  214 (322)
T ss_dssp             HHHHHHHHHHHHHHTTCEEETTEEEEEEECCSS-SCCCEEEEEETTTEEEEEECSEEEECCCCCT
T ss_pred             hHHHHHHHHHHHHhcCceEEEeeeccccccccc-ccccceEEEeecccEEEEeCCeEEEcCCCcc
Confidence            356889999999999999999999999998765 888888763   32  579999999998654

>d2dw4a3 d.16.1.5 (A:655-763) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: L-aminoacid/polyamine oxidase
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.71  E-value=0.002  Score=45.63  Aligned_cols=95  Identities=17%  Similarity=0.151  Sum_probs=54.1

Q ss_pred             cceEEEEEEeccCCCCCCCcce-eecCCCCccceEeeccccccccCCCCCeEEEEEee--CCCCCCCCCHHHHHHHHHHH
Q 019274          144 IDVVSVKLWFDKKVTVPNVSNA-CSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFY--HANELMPLKDDQVVAKAVSY  220 (343)
Q Consensus       144 ~~~~~v~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~e~~~~~~~~  220 (343)
                      ..+.++.|.|++++|.+..... ....+......+.+...      ..+..++.+...  .+..+..++++++.+.+++.
T Consensus         3 G~~~Kv~l~f~~~FW~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~vL~~~~~G~~a~~~~~l~~~~~~~~~l~~   76 (109)
T d2dw4a3           3 GNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWN------LYKAPILLALVAGEAAGIMENISDDVIVGRCLAI   76 (109)
T ss_dssp             CCCEEEEEECSSCCSCTTCSEEEECCSSSTTTTTTCEEEC------C--CCEEEEEECHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             ChhEEEEEEECCCCCCCCCCEeEEEecCCCCceEEeeccC------CCCCCEEEEEECcHHHHHHHhcCHHHHHHHHHHH
Confidence            4567899999999985432211 11111111111111111      123344433332  24456788999999999999


Q ss_pred             HhhhcccCCCCceeeeEEEecCCC
Q 019274          221 LSKCIKDFSTATVMDHKIRRFPKS  244 (343)
Q Consensus       221 L~~~~p~~~~~~~~~~~~~r~~~~  244 (343)
                      |+++||+....+++...+++|...
T Consensus        77 L~~~~~~~~~~~~~~~~~~~W~~d  100 (109)
T d2dw4a3          77 LKGIFGSSAVPQPKETVVSRWRAD  100 (109)
T ss_dssp             HHHHHCTTTCCCCSEEEECCTTTC
T ss_pred             HHHHhCccccCcccEEEEeccCCC
Confidence            999998653325666666777544

>d2v5za2 d.16.1.5 (A:290-401) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: L-aminoacid/polyamine oxidase
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.69  E-value=0.0018  Score=46.28  Aligned_cols=97  Identities=10%  Similarity=0.053  Sum_probs=56.4

Q ss_pred             ccceEEEEEEeccCCCCCCCcc-eeecCCCC-ccceEeeccccccccCCCCCeEEEEEee--CCCCCCCCCHHHHHHHHH
Q 019274          143 SIDVVSVKLWFDKKVTVPNVSN-ACSGFGDS-LAWTFFDLNKIYDEHKDDSATVIQADFY--HANELMPLKDDQVVAKAV  218 (343)
Q Consensus       143 ~~~~~~v~l~~~~~~~~~~~~~-~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~e~~~~~~  218 (343)
                      +..+.++.|.|++++|.+.... .....+.. ....+++.+...     .+..++.+...  .+..+..++++++++.++
T Consensus         2 mG~~~Kv~l~f~~~FW~~~~~~g~~~~~~~~~~~~~~~~~~~~~-----~~~~vL~~~~~G~~a~~~~~ls~~e~~~~~l   76 (112)
T d2v5za2           2 LGSVIKCIVYYKEPFWRKKDYCGTMIIDGEEAPVAYTLDDTKPE-----GNYAAIMGFILAHKARKLARLTKEERLKKLC   76 (112)
T ss_dssp             BCCEEEEEEECSSCGGGGGTEEEEEEECSTTCSCSEEEECCCTT-----SCSCEEEEEEETHHHHHHTTSCHHHHHHHHH
T ss_pred             chheEEEEEEcCCCCCCCCCceeeEEecCCCCcEEEEccCcCcc-----CCCcEEEEEeCcHHHHHHHhCCHHHHHHHHH
Confidence            3467899999999999543211 11111111 111123322211     12345443333  234567889999999999


Q ss_pred             HHHhhhcccCCCCceeeeEEEecCCC
Q 019274          219 SYLSKCIKDFSTATVMDHKIRRFPKS  244 (343)
Q Consensus       219 ~~L~~~~p~~~~~~~~~~~~~r~~~~  244 (343)
                      +.|+++||+....+++...+++|...
T Consensus        77 ~~L~~~~g~~~~~~~~~~~~~~W~~d  102 (112)
T d2v5za2          77 ELYAKVLGSLEALEPVHYEEKNWCEE  102 (112)
T ss_dssp             HHHHHHHTCGGGGCCSEEEEEEGGGC
T ss_pred             HHHHHHhCccccCCccEEEEcccCCC
Confidence            99999998642225667777888544

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=96.62  E-value=0.00085  Score=55.22  Aligned_cols=40  Identities=10%  Similarity=0.332  Sum_probs=35.0

Q ss_pred             CCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHHHhC
Q 019274          261 TSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG  301 (343)
Q Consensus       261 ~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~~~~  301 (343)
                      ++.+|+|++||++++.+| ++++||+.||+.||+.|+..+.
T Consensus       304 ~~~~~v~~~GD~~~~~~~-~~~~gA~~sG~~aA~~l~~~~~  343 (347)
T d1b5qa1         304 APVGRVYFTGEHTSEHYN-GYVHGAYLSGIDSAEILINCAQ  343 (347)
T ss_dssp             CCBTTEEECSGGGCSSCT-TSHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCEEEEEccccCcCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence            467899999999987677 6889999999999999988764

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=96.59  E-value=0.0033  Score=52.69  Aligned_cols=110  Identities=13%  Similarity=0.117  Sum_probs=69.5

Q ss_pred             HHHHHHhHHHHHHhhhcCCcccccHHHHHHHHHHHHHh-----------cC------------------CCceeEeecCC
Q 019274            8 ERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILA-----------HQ------------------KNFDLVWCRGT   58 (343)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~~-----------~~------------------~~~~~~~~~gG   58 (343)
                      .........++....+....+..+.......+......           ..                  .......++||
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  229 (373)
T d1seza1         150 KEVVDYLIDPFVAGTCGGDPDSLSMHHSFPELWNLEKRFGSVILGAIRSKLSPKNEKKQGPPKTSANKKRQRGSFSFLGG  229 (373)
T ss_dssp             HHHHHTTHHHHHHHHHSCCGGGSBHHHHCHHHHHHHHHTSCHHHHHHHHTTC----------CCCSCCSTTCSCBEETTC
T ss_pred             ccchhcccchhhhhhcccccccchhhhHHHHHHHhhhcchhhhhhHHHhhhccccccccchhhhhhhhcccceeeeeccc
Confidence            34455566777888888888888776555443321100           00                  00112245678


Q ss_pred             CchhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCe----EEEEEEC------CeEEecCEEEEeeChhhHH
Q 019274           59 LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCC----ISDVVCG------KETYSAGAVVLAVGISTLQ  121 (343)
Q Consensus        59 ~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~----v~~V~~~------g~~~~ad~VV~a~p~~~~~  121 (343)
                      + +.++++|++.++  +++|+++++|++|..+++ +.    ...|...      ++.++||.||+|+|...+.
T Consensus       230 ~-~~l~~~l~~~l~--~~~i~~~~~V~~i~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~D~Vi~a~p~~~l~  298 (373)
T d1seza1         230 M-QTLTDAICKDLR--EDELRLNSRVLELSCSCT-EDSAIDSWSIISASPHKRQSEEESFDAVIMTAPLCDVK  298 (373)
T ss_dssp             T-HHHHHHHHTTSC--TTTEETTCCEEEEEEECS-SSSSSCEEEEEEBCSSSSCBCCCEESEEEECSCHHHHH
T ss_pred             c-hHHHHHHHHHhc--cceEecCCEEEEEEEeCC-cccccccceEEecccCCCCceEEECCEEEECCchHHhh
Confidence            4 678998888763  789999999999998763 21    1233321      2467999999999875554

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=96.56  E-value=0.002  Score=55.20  Aligned_cols=59  Identities=19%  Similarity=0.286  Sum_probs=49.4

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC---Ce--EEecCEEEEeeChhhH
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG---KE--TYSAGAVVLAVGISTL  120 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~---g~--~~~ad~VV~a~p~~~~  120 (343)
                      ..++++|.+.+++.|++|+++++|+++.++++ ++|.+|...   ++  .+.|+.||+|++....
T Consensus       148 ~~i~~~L~~~~~~~g~~i~~~~~v~~l~~~~~-g~V~Gv~~~~~~~~~~~i~Ak~VVlAtGG~~~  211 (317)
T d1qo8a2         148 PEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDD-HSVVGAVVHGKHTGYYMIGAKSVVLATGGYGM  211 (317)
T ss_dssp             HHHHHHHHHHHHHTTCCEECSEEEEEEEECTT-SBEEEEEEEETTTEEEEEEEEEEEECCCCCTT
T ss_pred             hhhhHHHHHHhhhccceeeeccchhheeeccc-ccceeeEeecccceEEEEeccceEEecccccc
Confidence            35889999999999999999999999988665 889888763   33  5789999999998653

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.56  E-value=0.0025  Score=45.91  Aligned_cols=55  Identities=22%  Similarity=0.312  Sum_probs=41.1

Q ss_pred             CCchhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECC--eEEecCEEEEeeC
Q 019274           58 TLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGK--ETYSAGAVVLAVG  116 (343)
Q Consensus        58 G~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g--~~~~ad~VV~a~p  116 (343)
                      .+...+.+.+.+.++++|++++++++|+++.  +  +.......++  .+++||.||+|++
T Consensus        59 ~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~--~--~~~~~~~~~~~~~~i~~D~vi~A~G  115 (115)
T d1lvla2          59 TYDSELTAPVAESLKKLGIALHLGHSVEGYE--N--GCLLANDGKGGQLRLEADRVLVAVG  115 (115)
T ss_dssp             TSCHHHHHHHHHHHHHHTCEEETTCEEEEEE--T--TEEEEECSSSCCCEECCSCEEECCC
T ss_pred             cccchhHHHHHHHHHhhcceEEcCcEEEEEc--C--CeEEEEEcCCCeEEEEcCEEEEecC
Confidence            3445688899999999999999999999985  3  3322222222  4799999999985

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=96.51  E-value=0.0015  Score=47.92  Aligned_cols=56  Identities=16%  Similarity=0.197  Sum_probs=44.2

Q ss_pred             CCchhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE--C-C--eEEecCEEEEeeC
Q 019274           58 TLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--G-K--ETYSAGAVVLAVG  116 (343)
Q Consensus        58 G~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~--~-g--~~~~ad~VV~a~p  116 (343)
                      .+...+.+.+.+.++++|++++++++|++++.+++ | +. |.+  . +  ++++||.|++|++
T Consensus        64 ~~d~~~~~~l~~~l~~~gv~~~~~~~v~~v~~~~~-g-~~-v~~~~~~g~~~~i~~D~vl~A~G  124 (125)
T d1ojta2          64 GADRDLVKVWQKQNEYRFDNIMVNTKTVAVEPKED-G-VY-VTFEGANAPKEPQRYDAVLVAAG  124 (125)
T ss_dssp             TSCHHHHHHHHHHHGGGEEEEECSCEEEEEEEETT-E-EE-EEEESSSCCSSCEEESCEEECCC
T ss_pred             cchhhHHHHHHHHHHHcCcccccCcEEEEEEEcCC-c-EE-EEEEeCCCCeEEEEcCEEEEecC
Confidence            34456889999999999999999999999998773 4 32 443  2 2  3789999999985

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.51  E-value=0.0052  Score=44.89  Aligned_cols=58  Identities=16%  Similarity=0.150  Sum_probs=43.2

Q ss_pred             CCchhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCe-EEEEEEC-C------eEEecCEEEEeeC
Q 019274           58 TLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCC-ISDVVCG-K------ETYSAGAVVLAVG  116 (343)
Q Consensus        58 G~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~-v~~V~~~-g------~~~~ad~VV~a~p  116 (343)
                      ++...+.+.+.+.++++|++|++|++|++|...++ |. +..+... |      ...+||.||+|++
T Consensus        60 ~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~-g~~v~~~~~~~g~~~~~~~~~~~D~vl~a~G  125 (125)
T d3grsa2          60 SFDSMISTNCTEELENAGVEVLKFSQVKEVKKTLS-GLEVSMVTAVPGRLPVMTMIPDVDCLLWAIG  125 (125)
T ss_dssp             TSCHHHHHHHHHHHHHTTCEEETTEEEEEEEEETT-EEEEEEEECCTTSCCEEEEEEEESEEEECSC
T ss_pred             chhhHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCC-eEEEEEEEccCCcCcCccccccCCEEEEEeC
Confidence            44566889999999999999999999999988764 42 2222222 2      2468999999975

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.46  E-value=0.0024  Score=46.54  Aligned_cols=52  Identities=19%  Similarity=0.254  Sum_probs=43.1

Q ss_pred             CchhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeCh
Q 019274           59 LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGI  117 (343)
Q Consensus        59 ~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~  117 (343)
                      +...+.+.+.+.++++|+++++|+.|+++.  +  .   ++..+++.+++|.||+|++.
T Consensus        70 ~d~~~~~~~~~~l~~~GV~~~~~~~v~~~~--~--~---~v~~~~~~i~~D~vi~a~Gv  121 (122)
T d1xhca2          70 LDEELSNMIKDMLEETGVKFFLNSELLEAN--E--E---GVLTNSGFIEGKVKICAIGI  121 (122)
T ss_dssp             CCHHHHHHHHHHHHHTTEEEECSCCEEEEC--S--S---EEEETTEEEECSCEEEECCE
T ss_pred             CCHHHHHHHHHHHHHCCcEEEeCCEEEEEe--C--C---EEEeCCCEEECCEEEEEEEe
Confidence            456688889999999999999999999884  2  2   25667889999999999874

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=96.43  E-value=0.003  Score=45.99  Aligned_cols=50  Identities=18%  Similarity=0.215  Sum_probs=40.7

Q ss_pred             chhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeC
Q 019274           60 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVG  116 (343)
Q Consensus        60 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p  116 (343)
                      ...+.+.+.+.++++|++|++++.|+++.  +  +.   |+++ |++++||.||+|++
T Consensus        71 ~~~~~~~~~~~l~~~GV~i~~~~~v~~~~--~--~~---v~l~dg~~i~~D~vi~a~G  121 (121)
T d1d7ya2          71 PATLADFVARYHAAQGVDLRFERSVTGSV--D--GV---VLLDDGTRIAADMVVVGIG  121 (121)
T ss_dssp             CHHHHHHHHHHHHTTTCEEEESCCEEEEE--T--TE---EEETTSCEEECSEEEECSC
T ss_pred             CHHHHHHHHHHHHHCCcEEEeCCEEEEEe--C--CE---EEECCCCEEECCEEEEeeC
Confidence            45678888889999999999999999875  3  43   3444 78999999999975

>d1b5qa2 d.16.1.5 (A:294-405) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: L-aminoacid/polyamine oxidase
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=96.39  E-value=0.0067  Score=43.01  Aligned_cols=96  Identities=14%  Similarity=0.098  Sum_probs=55.2

Q ss_pred             cceEEEEEEeccCCCCCCCcceeecC-CCCcc--ceEeeccccccccCCCCCeEEEEEee--CCCCCCCCCHHHHHHHHH
Q 019274          144 IDVVSVKLWFDKKVTVPNVSNACSGF-GDSLA--WTFFDLNKIYDEHKDDSATVIQADFY--HANELMPLKDDQVVAKAV  218 (343)
Q Consensus       144 ~~~~~v~l~~~~~~~~~~~~~~~~~~-~~~~~--~~~~d~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~e~~~~~~  218 (343)
                      ..+.++.|.|++++|.+......+.. ....+  ..+.+....     ..+..++.+...  .+..+..++++++.+.++
T Consensus         3 G~~~Ki~l~F~~~FW~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~vL~~~~~G~~a~~~~~l~~~~~~~~~l   77 (112)
T d1b5qa2           3 AVYTKIFLKFPRKFWPEGKGREFFLYASSRRGYYGVWQEFEKQ-----YPDANVLLVTVTDEESRRIEQQSDEQTKAEIM   77 (112)
T ss_dssp             ECEEEEEEECSSCCSCCSTTCSEEEEECSSTTSSCEEEECTTT-----STTCCEEEEEEEHHHHHHHHTSCHHHHHHHHH
T ss_pred             ccEEEEEEEECCCCCCCCCCEEEEEeecCCCCeeEEEEEcccC-----CCCCCEEEEEeCcHHHHHHHhCCHHHHHHHHH
Confidence            35678999999999854432111111 11111  111222211     123445544333  234567789999999999


Q ss_pred             HHHhhhcccCCCCceeeeEEEecCCC
Q 019274          219 SYLSKCIKDFSTATVMDHKIRRFPKS  244 (343)
Q Consensus       219 ~~L~~~~p~~~~~~~~~~~~~r~~~~  244 (343)
                      +.|+++||+....+++...+++|...
T Consensus        78 ~~L~~~~~~~~~~~~~~~~~t~W~~d  103 (112)
T d1b5qa2          78 QVLRKMFPGKDVPDATDILVPRWWSD  103 (112)
T ss_dssp             HHHHHHCTTSCCCCCSEEECCCTTTC
T ss_pred             HHHHHHhCcccccCCCEEEeccCCCC
Confidence            99999998654335666666667443

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=95.84  E-value=0.0023  Score=53.72  Aligned_cols=37  Identities=32%  Similarity=0.541  Sum_probs=32.0

Q ss_pred             CCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHHHhC
Q 019274          261 TSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG  301 (343)
Q Consensus       261 ~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~~~~  301 (343)
                      +++||||+|||++. |   .++.+|+.||+.||+.|++.|.
T Consensus       334 t~~pglf~aGd~~~-g---~~~~~A~~~G~~aA~~i~~~L~  370 (373)
T d1seza1         334 KNLPGLFYAGNHRG-G---LSVGKALSSGCNAADLVISYLE  370 (373)
T ss_dssp             HHSTTEEECCSSSS-C---SSHHHHHHHHHHHHHHHHHHHS
T ss_pred             CCCCCEEEEecCCC-c---hhHHHHHHHHHHHHHHHHHHHh
Confidence            46799999999975 2   3688999999999999999886

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=94.97  E-value=0.019  Score=49.77  Aligned_cols=57  Identities=18%  Similarity=0.176  Sum_probs=39.9

Q ss_pred             HHHHHHHHcC-CeEEcceeeeEEEecCCCCeEEEEEE---C--C-----eEEecCEEEEeeChhhHHHhh
Q 019274           66 PWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVC---G--K-----ETYSAGAVVLAVGISTLQELI  124 (343)
Q Consensus        66 ~l~~~l~~~G-~~i~~~~~V~~I~~~~~~g~v~~V~~---~--g-----~~~~ad~VV~a~p~~~~~~Ll  124 (343)
                      .....+++.| .+|+++++|++|..+++  +.++|..   +  +     .+++||.||+|+++-.+.+||
T Consensus       227 ~~L~~a~~~g~~~i~t~~~V~~I~~~~~--~~~~V~v~~~~~~~~~~~~~~~~A~~VILaAGai~Tp~LL  294 (370)
T d3coxa1         227 TYLAQAAATGKLTITTLHRVTKVAPATG--SGYSVTMEQIDEQGNVVATKVVTADRVFFAAGSVGTSKLL  294 (370)
T ss_dssp             THHHHHHHTTCEEEECSEEEEEEEECSS--SSEEEEEEEECTTSCEEEEEEEEEEEEEECSHHHHHHHHH
T ss_pred             HHHHHHHhCCCcEEEecCcEEEEEEcCC--CeEEEEEEEeCCccceeeEEEEECCEEEEeeCHHHhHHHH
Confidence            3334444555 69999999999999874  3334433   2  1     257899999999987776665

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.90  E-value=0.018  Score=41.63  Aligned_cols=58  Identities=21%  Similarity=0.213  Sum_probs=42.3

Q ss_pred             CCchhhhHHHHHHHHHcCCeEEcceeeeEEEecCC--CCeEEEEEEC----Ce--EEecCEEEEeeC
Q 019274           58 TLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEE--RCCISDVVCG----KE--TYSAGAVVLAVG  116 (343)
Q Consensus        58 G~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~--~g~v~~V~~~----g~--~~~ad~VV~a~p  116 (343)
                      ++...+.+.+.+.+++.|++|++|+.|+++...++  .+++ .+...    ++  ..++|.|++|++
T Consensus        57 ~~D~~~~~~l~~~l~~~Gv~i~~~~~v~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~D~vl~AiG  122 (122)
T d1h6va2          57 GFDQDMANKIGEHMEEHGIKFIRQFVPTKIEQIEAGTPGRL-KVTAKSTNSEETIEDEFNTVLLAVG  122 (122)
T ss_dssp             TSCHHHHHHHHHHHHHTTEEEEESCEEEEEEEEECSTTCEE-EEEEECTTSCEEEEEEESEEECCCC
T ss_pred             cCCHHHHHHHHHHHHHCCCEEEECCEEEEEEEecCCCccEE-EEEEEECCCCcEEEEECCEEEEEeC
Confidence            44566899999999999999999999999976432  1332 33332    22  457999999875

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=94.86  E-value=0.031  Score=47.61  Aligned_cols=56  Identities=14%  Similarity=0.166  Sum_probs=46.7

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE----CCe--EEecCEEEEeeChh
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIS  118 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~----~g~--~~~ad~VV~a~p~~  118 (343)
                      ..+..+|.+.+++.|++|+.++.|.++..++  ++|.++..    +|+  ++.|+.||+|++..
T Consensus       158 ~~i~~~l~~~~~~~gv~i~~~~~~~~li~~~--~~v~g~~~~~~~~g~~~~i~Ak~VvlATGG~  219 (336)
T d2bs2a2         158 HTMLFAVANECLKLGVSIQDRKEAIALIHQD--GKCYGAVVRDLVTGDIIAYVAKGTLIATGGY  219 (336)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSEEEEEEEEET--TEEEEEEEEETTTCCEEEEECSEEEECCCCC
T ss_pred             HHHHHHHHHHHHhccccccceeeeeeccccc--ccccceeEEeccCCcEEEEecCeEEEecccc
Confidence            4588899999999999999999999999988  78776655    243  57899999998864

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=94.78  E-value=0.025  Score=47.71  Aligned_cols=56  Identities=16%  Similarity=0.033  Sum_probs=46.2

Q ss_pred             hhhhHHHHHHHHHcCC--eEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeCh
Q 019274           61 EKIFEPWMDSMRTRGC--EFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGI  117 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~--~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~  117 (343)
                      +.+.+.|.+.+++.+.  .|++|++|+++..+++ ...|.|++. ++++++|.||+|++.
T Consensus        85 ~e~~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de~-~~~W~V~~~~~~~~~~~~~i~atG~  143 (298)
T d1w4xa1          85 PEILRYINFVADKFDLRSGITFHTTVTAAAFDEA-TNTWTVDTNHGDRIRARYLIMASGQ  143 (298)
T ss_dssp             HHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETT-TTEEEEEETTCCEEEEEEEEECCCS
T ss_pred             chHHHHHHHHHHHcCCcccccCCcEEEEEEEecC-CCceeeccccccccccceEEEeecc
Confidence            4477788888888887  6999999999998654 335889886 678999999999996

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=94.46  E-value=0.031  Score=48.23  Aligned_cols=58  Identities=14%  Similarity=0.114  Sum_probs=41.0

Q ss_pred             HHHHHHHcC-CeEEcceeeeEEEecCCCCeEEEEEE-C--C-----eEEecCEEEEeeChhhHHHhh
Q 019274           67 WMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVC-G--K-----ETYSAGAVVLAVGISTLQELI  124 (343)
Q Consensus        67 l~~~l~~~G-~~i~~~~~V~~I~~~~~~g~v~~V~~-~--g-----~~~~ad~VV~a~p~~~~~~Ll  124 (343)
                      ....+++.| .+|++++.|++|..+++.+..+.|+. +  +     .+++|+.||+|+++-.+.+||
T Consensus       224 yl~~a~~~gn~~i~~~t~V~~I~~~~~g~~~v~v~~~~~~~~~~~~~~i~Ak~VVLaAGai~Tp~LL  290 (367)
T d1n4wa1         224 YLAAALGTGKVTIQTLHQVKTIRQTKDGGYALTVEQKDTDGKLLATKEISCRYLFLGAGSLGSTELL  290 (367)
T ss_dssp             HHHHHHHTTSEEEEESEEEEEEEECTTSSEEEEEEEECTTCCEEEEEEEEEEEEEECSHHHHHHHHH
T ss_pred             hhHHHHhCCCeEEECCCEEEEEEEcCCCCEEEEEEEECCCCcceeEEEEecCEEEEecchhcCHHHH
Confidence            334455666 79999999999998874123334443 1  1     257899999999997777765

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=93.90  E-value=0.041  Score=46.97  Aligned_cols=56  Identities=14%  Similarity=-0.137  Sum_probs=43.0

Q ss_pred             hhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC----Ce---EEecCEEEEeeChhhH
Q 019274           62 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG----KE---TYSAGAVVLAVGISTL  120 (343)
Q Consensus        62 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~----g~---~~~ad~VV~a~p~~~~  120 (343)
                      .+.+.|..+++..+..|++|++|++|..++  ++ |.|++.    ++   ...||.||+|++....
T Consensus       114 ~~~~yl~~~~~~~~~~I~~~t~V~~v~~~~--~~-w~Vt~~~~~~~~~~~~~~~d~VI~AtG~~s~  176 (335)
T d2gv8a1         114 TIQEYQRIYAQPLLPFIKLATDVLDIEKKD--GS-WVVTYKGTKAGSPISKDIFDAVSICNGHYEV  176 (335)
T ss_dssp             HHHHHHHHHHGGGGGGEECSEEEEEEEEET--TE-EEEEEEESSTTCCEEEEEESEEEECCCSSSS
T ss_pred             HHHHHHHHHHHHhhhcccCceEEEEEEecC--CE-EEEEEEecCCCCeEEEEEeeEEEEccccccc
Confidence            466777777777889999999999999887  66 445542    22   4579999999997654

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=93.88  E-value=0.039  Score=46.74  Aligned_cols=54  Identities=20%  Similarity=0.304  Sum_probs=40.7

Q ss_pred             hhHHHHHH-HHHcCCeEEcceeeeEEEecCCCCeEEEEEE----CCe--EEecCEEEEeeChh
Q 019274           63 IFEPWMDS-MRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIS  118 (343)
Q Consensus        63 l~~~l~~~-l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~----~g~--~~~ad~VV~a~p~~  118 (343)
                      ++..+.+. .+..+++|+.+++|++|..++  |+|.++..    +|+  .+.|+.||+|++..
T Consensus       136 ~~~~~l~~~~~~~~v~i~~~~~v~~Ll~d~--g~v~Gvv~~~~~~g~~~~~~AkaVILATGG~  196 (311)
T d1kf6a2         136 MLHTLFQTSLQFPQIQRFDEHFVLDILVDD--GHVRGLVAMNMMEGTLVQIRANAVVMATGGA  196 (311)
T ss_dssp             HHHHHHHHHTTCTTEEEEETEEEEEEEEET--TEEEEEEEEETTTTEEEEEECSCEEECCCCC
T ss_pred             HHHhHHHHHHccCcceeEeeeEeeeeEecC--CcceeEEEEEcCCCcEEEEECCEEEEcCCCc
Confidence            44444444 444579999999999999888  88888764    244  45899999999874

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.24  E-value=0.033  Score=44.34  Aligned_cols=43  Identities=16%  Similarity=0.235  Sum_probs=35.4

Q ss_pred             HHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeCh
Q 019274           70 SMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGI  117 (343)
Q Consensus        70 ~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~  117 (343)
                      .+++.|++++++++|++|..++  .   .|+++ |+++.+|.+|+|++.
T Consensus        92 ~~~~~gI~~~~g~~V~~id~~~--~---~V~l~dG~~i~~d~lViAtG~  135 (213)
T d1m6ia1          92 HIENGGVAVLTGKKVVQLDVRD--N---MVKLNDGSQITYEKCLIATGG  135 (213)
T ss_dssp             TSTTCEEEEEETCCEEEEEGGG--T---EEEETTSCEEEEEEEEECCCE
T ss_pred             HHHHCCeEEEeCCEEEEeeccC--c---eeeeccceeeccceEEEeeee
Confidence            4567899999999999997765  4   35665 779999999999984

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=91.79  E-value=0.19  Score=40.24  Aligned_cols=49  Identities=16%  Similarity=0.093  Sum_probs=37.0

Q ss_pred             HHHHHHc-CCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhh
Q 019274           68 MDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST  119 (343)
Q Consensus        68 ~~~l~~~-G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~  119 (343)
                      .+.++.. +.+|+.+ .|.+|..++  +++.+|++. |.++.|+.||+|++...
T Consensus        74 k~~l~~~~nL~i~q~-~V~dli~e~--~~v~gV~t~~G~~~~AkaVILtTGTFL  124 (230)
T d2cula1          74 KYLLEGLRPLHLFQA-TATGLLLEG--NRVVGVRTWEGPPARGEKVVLAVGSFL  124 (230)
T ss_dssp             HHHHHTCTTEEEEEC-CEEEEEEET--TEEEEEEETTSCCEECSEEEECCTTCS
T ss_pred             HHHHhhhcCHHHHhc-cceeeEecc--cceeeEEeccccEEEEeEEEEccCcce
Confidence            3344433 5566644 788888888  789999997 67899999999999753

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=91.35  E-value=0.0073  Score=51.62  Aligned_cols=96  Identities=7%  Similarity=-0.063  Sum_probs=62.6

Q ss_pred             CCCHHHHHHhHHHHHHhhhcCCcccccHHHHHHHHHHHHHhcC--CCceeEeecCCCchhhhHHHHHHHHHcCCeEEcce
Q 019274            5 GCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQ--KNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGR   82 (343)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~~~~--~~~~~~~~~gG~~~~l~~~l~~~l~~~G~~i~~~~   82 (343)
                      .+|+++++.++.|++..+|+.+++++++.++..+-........  ...--++|++| +..+++.|   |+..+.+|.+++
T Consensus       141 ~~G~~lye~f~~pYt~K~Wg~~~~~L~~~~~~r~p~r~~~d~~yf~d~~q~~Pk~G-yt~~~e~m---L~~~~i~v~ln~  216 (314)
T d2bi7a1         141 FIGKELYEAFFKGYTIKQWGMQPSELPASILKRLPVRFNYDDNYFNHKFQGMPKCG-YTQMIKSI---LNHENIKVDLQR  216 (314)
T ss_dssp             HHCHHHHHHHTHHHHHHHHSSCGGGSBGGGCCSCCCCSSSCCCSCCCSEEEEETTH-HHHHHHHH---HCSTTEEEEESC
T ss_pred             hchhhhHHhhcCcchhhhhccCCcccchhhhhccceeccccccccchhhheeeccc-HHHHHHHH---HhCCCCeeeccc
Confidence            4689999999999999999999999998765322111000000  01112578888 45576655   344567888776


Q ss_pred             eeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhhH
Q 019274           83 RVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL  120 (343)
Q Consensus        83 ~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~~  120 (343)
                      .+.    .+            +...+|+||.|.|++.+
T Consensus       217 ~~~----~~------------~~~~~d~vI~TgpiD~~  238 (314)
T d2bi7a1         217 EFI----VE------------ERTHYDHVFYSGPLDAF  238 (314)
T ss_dssp             CCC----GG------------GGGGSSEEEECSCHHHH
T ss_pred             ccc----cc------------ccccceeEEEeccHHHH
Confidence            642    11            13358999999998765

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=90.85  E-value=0.12  Score=44.59  Aligned_cols=59  Identities=14%  Similarity=0.228  Sum_probs=42.5

Q ss_pred             hHHHHHHHHHcC-CeEEcceeeeEEEecCCCCeEEEEEEC------Ce--EEecC-EEEEeeChhhHHHhh
Q 019274           64 FEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVCG------KE--TYSAG-AVVLAVGISTLQELI  124 (343)
Q Consensus        64 ~~~l~~~l~~~G-~~i~~~~~V~~I~~~~~~g~v~~V~~~------g~--~~~ad-~VV~a~p~~~~~~Ll  124 (343)
                      ..++...+.+++ .+|++++.|++|..++  +++++|++.      +.  ++.|+ .||+|+++-.+.+||
T Consensus       193 ~~~yl~~a~~r~nl~i~t~~~V~rI~~d~--~ra~GV~~~~~~~~~~~~~~v~a~~eVILsAGai~SP~LL  261 (360)
T d1kdga1         193 VATYLQTALARPNFTFKTNVMVSNVVRNG--SQILGVQTNDPTLGPNGFIPVTPKGRVILSAGAFGTSRIL  261 (360)
T ss_dssp             HHTHHHHHHTCTTEEEECSCCEEEEEEET--TEEEEEEESCTTSSGGGEEEEEEEEEEEECSHHHHHHHHH
T ss_pred             cchhhhhhhcccccccccCcEEEEEEEeC--CEEEEEEEEecccCcceEEEEEECCEEEEechhHhChHHH
Confidence            344444444444 6999999999999988  899999883      22  34554 499999987777765

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=90.85  E-value=0.37  Score=35.83  Aligned_cols=49  Identities=20%  Similarity=0.249  Sum_probs=36.7

Q ss_pred             hhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCe--EEecCEEEEeeC
Q 019274           63 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKE--TYSAGAVVLAVG  116 (343)
Q Consensus        63 l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~--~~~ad~VV~a~p  116 (343)
                      ....+...++.+|+++..++.|.+|. ++  |.  .+..+|+  ++.||.||+|++
T Consensus       110 ~~~~~~~~~~~~gv~~~~~~~v~~i~-~~--gv--~~~~~g~e~~i~aD~Vv~A~G  160 (162)
T d1ps9a2         110 TGWIHRTTLLSRGVKMIPGVSYQKID-DD--GL--HVVINGETQVLAVDNVVICAG  160 (162)
T ss_dssp             THHHHHHHHHHTTCEEECSCEEEEEE-TT--EE--EEEETTEEEEECCSEEEECCC
T ss_pred             hhHHHHHHHhhCCeEEEeeeEEEEEc-CC--CC--EEecCCeEEEEECCEEEECCC
Confidence            34456677889999999999999985 22  43  2445553  589999999986

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=90.60  E-value=0.15  Score=43.58  Aligned_cols=53  Identities=11%  Similarity=0.123  Sum_probs=41.2

Q ss_pred             HcCCeEEcceeeeEEEecCCCCeEEEEEEC----Ce--EEecCEEEEeeChhhHHHhhh
Q 019274           73 TRGCEFLDGRRVTDFIYDEERCCISDVVCG----KE--TYSAGAVVLAVGISTLQELIK  125 (343)
Q Consensus        73 ~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~----g~--~~~ad~VV~a~p~~~~~~Ll~  125 (343)
                      ..+.+|++++.|++|..+++++++++|++.    ++  +++|+.||++.++..+.+||-
T Consensus       230 ~~~~~l~~~a~V~~i~~~~~~~r~~gV~~~d~~~g~~~~i~a~~vilaaGa~~tp~lL~  288 (379)
T d2f5va1         230 EERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLV  288 (379)
T ss_dssp             EEEEEEECSEEEEEEEECTTSSCEEEEEEEETTTCCEEEEEEEEEEECSCHHHHHHHHH
T ss_pred             CCCCEEecCCEEEEEEEeCCCCEEEEEEEEECCCCEEEEEeceEEEeccCccCCHHHHh
Confidence            456899999999999987543578888752    33  578999999999988776653

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=89.86  E-value=0.12  Score=43.14  Aligned_cols=35  Identities=26%  Similarity=0.343  Sum_probs=28.4

Q ss_pred             CCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHH
Q 019274          262 SFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD  298 (343)
Q Consensus       262 ~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~  298 (343)
                      +..++||+||++...+  +.+++|+.||+.||..|..
T Consensus       332 ~~g~v~~aGd~~~~~~--~~~~~a~~sG~~aA~~i~~  366 (370)
T d2iida1         332 SQGRIYFAGEYTAQAH--GWIDSTIKSGLRAARDVNL  366 (370)
T ss_dssp             CBTTEEECSGGGSSSS--SCHHHHHHHHHHHHHHHHH
T ss_pred             ccCCEEEecccccCCC--cccHHHHHHHHHHHHHHHh
Confidence            4468999999986332  5799999999999999854

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=89.67  E-value=0.35  Score=37.30  Aligned_cols=47  Identities=17%  Similarity=0.239  Sum_probs=35.7

Q ss_pred             HHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE-C-Ce--EEecCEEEEeeCh
Q 019274           68 MDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-G-KE--TYSAGAVVLAVGI  117 (343)
Q Consensus        68 ~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~-~-g~--~~~ad~VV~a~p~  117 (343)
                      .+.+++.|.++++++.|++|..++  ..++ ++. . |+  ++.+|.+|++++.
T Consensus        63 ~~~l~~~gi~v~~~~~V~~i~~~~--~~v~-~~~~~~g~~~~~~~D~li~a~G~  113 (198)
T d1nhpa1          63 GEKMESRGVNVFSNTEITAIQPKE--HQVT-VKDLVSGEERVENYDKLIISPGA  113 (198)
T ss_dssp             HHHHHHTTCEEEETEEEEEEETTT--TEEE-EEETTTCCEEEEECSEEEECCCE
T ss_pred             HHHHHHCCcEEEEeeceeeEeecc--ccce-eeecccccccccccceeeEeecc
Confidence            456788899999999999998776  4443 332 2 33  5789999999986

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=88.76  E-value=0.21  Score=43.25  Aligned_cols=55  Identities=16%  Similarity=0.192  Sum_probs=40.9

Q ss_pred             HHHcCCeEEcceeeeEEEecCCC--CeEEEEEE---CCe--EEecCE-EEEeeChhhHHHhhh
Q 019274           71 MRTRGCEFLDGRRVTDFIYDEER--CCISDVVC---GKE--TYSAGA-VVLAVGISTLQELIK  125 (343)
Q Consensus        71 l~~~G~~i~~~~~V~~I~~~~~~--g~v~~V~~---~g~--~~~ad~-VV~a~p~~~~~~Ll~  125 (343)
                      ++..+.+|++++.|++|..+++.  .++++|+.   +|+  +++|++ ||+|.++-.+.+||-
T Consensus       235 ~~~~nl~i~t~~~V~rI~~~~~~~~~ra~GV~~~~~~g~~~~v~A~keVILsAGAi~SP~LLl  297 (385)
T d1cf3a1         235 YQRPNLQVLTGQYVGKVLLSQNGTTPRAVGVEFGTHKGNTHNVYAKHEVLLAAGSAVSPTILE  297 (385)
T ss_dssp             TTCTTEEEEESCEEEEEEEECSSSSCEEEEEEEEEETTEEEEEEEEEEEEECSCTTTHHHHHH
T ss_pred             hcCCcccccCCceEEEEEEcCCCceeEEEEEEEEcCCCCEEEEEeCCEEEEcCchhhCHHHHH
Confidence            34557899999999999987631  17888875   354  567876 999999877777653

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=88.63  E-value=0.24  Score=39.39  Aligned_cols=50  Identities=18%  Similarity=0.240  Sum_probs=40.4

Q ss_pred             HHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhHHHhh
Q 019274           72 RTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQELI  124 (343)
Q Consensus        72 ~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~~~Ll  124 (343)
                      +..+++++++++|..|...+  +.+ .|++. |+.+++|++++++|...+.+.+
T Consensus       221 ~~~~~~i~~~~~v~~i~~~~--~~v-~v~~~~g~~~~~d~~~~~~~~~~l~~~~  271 (347)
T d1b5qa1         221 KIVDPRLQLNKVVREIKYSP--GGV-TVKTEDNSVYSADYVMVSASLGVLQSDL  271 (347)
T ss_dssp             CBCCTTEESSCCEEEEEECS--SCE-EEEETTSCEEEESEEEECSCHHHHHTTS
T ss_pred             hhcccccccccccccccccC--ccE-EEEECCCCEEEcCEEEeecCHHHHhhcc
Confidence            44577999999999999887  554 46665 6789999999999998876543

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=87.62  E-value=0.88  Score=32.35  Aligned_cols=51  Identities=10%  Similarity=0.150  Sum_probs=38.8

Q ss_pred             hHHHHHHHHHcC-CeEEcceeeeEEEecCCCCeEEEEEEC----C--eEEecCEEEEeeC
Q 019274           64 FEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVCG----K--ETYSAGAVVLAVG  116 (343)
Q Consensus        64 ~~~l~~~l~~~G-~~i~~~~~V~~I~~~~~~g~v~~V~~~----g--~~~~ad~VV~a~p  116 (343)
                      .+.+.+.+++.+ .+|++++.|.+|.=++  +++.+|++.    |  .++.+|.|.++++
T Consensus        68 ~~~~~~~~~~~~~I~v~~~~~v~~i~G~~--~~v~~v~l~~~~tge~~~l~vdgvFv~IG  125 (126)
T d1fl2a2          68 DQVLQDKLRSLKNVDIILNAQTTEVKGDG--SKVVGLEYRDRVSGDIHNIELAGIFVQIG  125 (126)
T ss_dssp             CHHHHHHHHTCTTEEEESSEEEEEEEESS--SSEEEEEEEETTTCCEEEEECSEEEECSC
T ss_pred             ccccccccccccceeEEcCcceEEEEccc--cceeeEEEEECCCCCEEEEECCEEEEEeC
Confidence            456667777665 7999999999998765  457778763    3  3689999998875

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=86.93  E-value=0.41  Score=35.54  Aligned_cols=47  Identities=23%  Similarity=0.205  Sum_probs=35.9

Q ss_pred             HHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhh
Q 019274           68 MDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST  119 (343)
Q Consensus        68 ~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~  119 (343)
                      .+.+++.|.++++++.|+++....   +  .+..+++++.+|.+|+|++...
T Consensus        59 ~~~~~~~~v~~~~~~~v~~i~~~~---~--~~~~~~~~i~~D~li~a~G~~~  105 (167)
T d1xhca1          59 LDWYRKRGIEIRLAEEAKLIDRGR---K--VVITEKGEVPYDTLVLATGAPN  105 (167)
T ss_dssp             HHHHHHHTEEEECSCCEEEEETTT---T--EEEESSCEEECSEEEECCCEEC
T ss_pred             HHHHHhccceeeeecccccccccc---c--cccccccccccceeEEEEEecC
Confidence            345677899999999999986433   2  2455677899999999998643

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=86.29  E-value=1.3  Score=31.34  Aligned_cols=54  Identities=15%  Similarity=0.275  Sum_probs=39.7

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC----C---eEEecCEEEEeeC
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG----K---ETYSAGAVVLAVG  116 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~----g---~~~~ad~VV~a~p  116 (343)
                      +.+.+.+.+..+.....+++++.|.+|.=++  .++.+|++.    +   +++.+|.|+++++
T Consensus        66 ~~~~~~~~~~~~~~~i~~~~~~~v~~i~G~~--~~v~~v~l~~~~~~e~~~~l~~dgvFv~iG  126 (126)
T d1trba2          66 KILIKRLMDKVENGNIILHTNRTLEEVTGDQ--MGVTGVRLRDTQNSDNIESLDVAGLFVAIG  126 (126)
T ss_dssp             HHHHHHHHHHHHTSSEEEECSCEEEEEEECS--SSEEEEEEECCTTCCCCEEEECSEEEECSC
T ss_pred             hHHHHHHHHhhcccceeEecceEEEEEECCC--CceEEEEEEECCCCceEEEEECCEEEEEeC
Confidence            4456666666666678999999999998765  557788763    2   3588999998764

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=85.68  E-value=0.91  Score=37.98  Aligned_cols=57  Identities=14%  Similarity=0.206  Sum_probs=44.5

Q ss_pred             hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE---C-Ce--EEecCEEEEeeChh
Q 019274           61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---G-KE--TYSAGAVVLAVGIS  118 (343)
Q Consensus        61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~---~-g~--~~~ad~VV~a~p~~  118 (343)
                      ..+.++|.+.+++.+++++.++.+.++..+++ +++.++..   . |+  .+.|+.||+|++..
T Consensus       143 ~~i~~~L~~~~~~~~v~~~~~~~~~~l~~~~~-~~~~g~~~~~~~~g~~~~~~a~~vIlAtGG~  205 (330)
T d1neka2         143 HALLHTLYQQNLKNHTTIFSEWYALDLVKNQD-GAVVGCTALCIETGEVVYFKARATVLATGGA  205 (330)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSEEEEEEEECTT-SCEEEEEEEETTTCCEEEEEESCEEECCCCC
T ss_pred             HHHHHHHHHHHHhcCCeEEEEEEEEEeeeecc-ccceeeeeEEccCCcEEEEeccEEEEcCCCc
Confidence            46889999999999999999999999987654 55554332   2 43  56899999999874

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=85.08  E-value=0.45  Score=41.19  Aligned_cols=54  Identities=20%  Similarity=0.247  Sum_probs=39.3

Q ss_pred             HHcCCeEEcceeeeEEEecCC--CCeEEEEEEC---Ce--EEecCE-EEEeeChhhHHHhhh
Q 019274           72 RTRGCEFLDGRRVTDFIYDEE--RCCISDVVCG---KE--TYSAGA-VVLAVGISTLQELIK  125 (343)
Q Consensus        72 ~~~G~~i~~~~~V~~I~~~~~--~g~v~~V~~~---g~--~~~ad~-VV~a~p~~~~~~Ll~  125 (343)
                      .+.+.+|++++.|++|..+++  ..++++|++.   +.  ++.|++ ||+|.++-.+.+||-
T Consensus       242 ~r~nl~i~t~a~V~rIl~~~~~~g~ra~GV~~~~~~g~~~~v~A~keVILaAGai~SP~LLl  303 (391)
T d1gpea1         242 QRSNLEILTGQMVGKVLFKQTASGPQAVGVNFGTNKAVNFDVFAKHEVLLAAGSAISPLILE  303 (391)
T ss_dssp             TCTTEEEEESCEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEEECSCTTTHHHHHH
T ss_pred             cchhhhhhccceeeEEeeeCCCCCceEEeeEEecCCCeEEEEEeCCEEEEecchhcchHHHH
Confidence            345789999999999977532  0268888762   43  567886 999999877766543

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.90  E-value=0.41  Score=39.88  Aligned_cols=40  Identities=20%  Similarity=0.389  Sum_probs=29.6

Q ss_pred             CCCCCCeEEeecccc---C--CCCCccchHHHHHHHHHHHHHHHHh
Q 019274          260 FTSFPNLFMAGDWIT---T--RHGSWSQERSYVTGLEAANRVVDYL  300 (343)
Q Consensus       260 ~~~~~~L~laGd~~~---~--g~~~~~~ega~~Sg~~aA~~il~~~  300 (343)
                      .+..||+|++||...   .  ..+ .++.+++.||++||+.|++.|
T Consensus       265 ~~~~pgl~~~Gdaa~~v~g~~r~G-~t~g~m~~sG~~aA~~i~~~l  309 (311)
T d2gjca1         265 YAGVDNMYFAGMEVAELDGLNRMG-PTFGAMALSGVHAAEQILKHF  309 (311)
T ss_dssp             CTTSTTEEECTHHHHHHHTCCBCC-SCCHHHHHHHHHHHHHHHHHH
T ss_pred             EEccCCEEEEeeecCcccCcCCcc-HHHHHHHHHHHHHHHHHHHHh
Confidence            356799999999642   1  122 356667889999999999876

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=83.37  E-value=0.92  Score=33.31  Aligned_cols=28  Identities=11%  Similarity=-0.008  Sum_probs=24.3

Q ss_pred             hhhHHHHHHHHHcCCeEEcceeeeEEEe
Q 019274           62 KIFEPWMDSMRTRGCEFLDGRRVTDFIY   89 (343)
Q Consensus        62 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~   89 (343)
                      .....+.+.++++|+++++++.|.+|..
T Consensus        83 ~~~~~~~~~l~~~GV~i~~~~~v~~i~~  110 (156)
T d1djqa2          83 LEYPNMMRRLHELHVEELGDHFCSRIEP  110 (156)
T ss_dssp             TCHHHHHHHHHHTTCEEEETEEEEEEET
T ss_pred             hHHHHHHHHHhhccceEEeccEEEEecC
Confidence            3567888889999999999999999974

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=82.68  E-value=0.7  Score=36.38  Aligned_cols=40  Identities=18%  Similarity=0.136  Sum_probs=30.6

Q ss_pred             CCCCCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHHH
Q 019274          258 RGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDY  299 (343)
Q Consensus       258 ~~~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~~  299 (343)
                      ..+|.+||+|-+||-+.. .+ ....-|+.-|+.||+.|...
T Consensus       190 ~~~TsvpgIyA~GDv~~g-~~-~l~~~A~~eG~~aa~~~~g~  229 (235)
T d1h6va1         190 EEQTNVPYIYAIGDILEG-KL-ELTPVAIQAGRLLAQRLYGG  229 (235)
T ss_dssp             TSBCSSTTEEECGGGBTT-SC-CCHHHHHHHHHHHHHHHHHC
T ss_pred             ccccCCCCEEEEEeccCC-Cc-ccHHHHHHHHHHHHHHHcCC
Confidence            346899999999999863 23 23445889999999999763

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=82.21  E-value=1.5  Score=35.98  Aligned_cols=56  Identities=20%  Similarity=0.175  Sum_probs=41.1

Q ss_pred             hhHHHHHHHHHcCCeEEcceeeeEEEecCC-----CCeEEEEEE--C--Ce--EEecCEEEEeeChh
Q 019274           63 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEE-----RCCISDVVC--G--KE--TYSAGAVVLAVGIS  118 (343)
Q Consensus        63 l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~-----~g~v~~V~~--~--g~--~~~ad~VV~a~p~~  118 (343)
                      +...+.+.++..|++++.++++.++..+++     .++|+++..  .  ++  .+.++.||+|++..
T Consensus       140 ~~~~~~~~~~~~~v~~~~~~~~~~Li~~~~~~~~~~~rv~Gv~~~~~~~g~~~~~~ak~VilAtGG~  206 (305)
T d1chua2         140 ETTLVSKALNHPNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRNKETVETCHAKAVVLATGGA  206 (305)
T ss_dssp             -CCCHHHHHHCTTEEEECSEEEEEEEEGGGTTCCSSCBEEEEEEEETTTTEEEEEECSEEEECCCCC
T ss_pred             HHHHHHHHHhccCcceeceeEEEEEEEEcCcccccCceEEEEEEEeCCCCcEEEEeecceEEeeecc
Confidence            334455566777999999999999998762     126888866  1  33  46899999999875