Citrus Sinensis ID: 019290

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340---
Protein Sequence
MKLLSSFIIFIFPLVFPCVILSSKSYQQLQLPGVVGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEGNTLNSVSEVQEYGEYLYTGSSVQPYVVVIKA
Secondary Structure (PSIPRED)
ccHHHHHHHHHccccccccccccccccEEcccccccccEEEEcccccEEEEEEcccEEEEEEcccccEEEEEEcccccccccccccccEEEccccccccEEEEEccccEEEEEEccccEEEEEccccEEEEEEEEcccccEEccccEEEEccccEEEEEcccccccccccccccccccccEEEEEEccccccEEEEEcccccccEEEEcccccEEEEEEccccEEEEEEEcccccccccEEEEEcccccccEEEcccccEEEEEEcccccccccccccHHHccccccccccEEEEEEcccccEEEEEEcccccccccEEEEEEEccEEEEEcccccEEEEEEc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHccccccccccHHHHcHEcccccccccccEEEcccccccEEEccccEEEEEEcccccEEEEEEccccccHHHccccccccccccccccccEEEccccccEEEEEccccEEEEcccccEEEEEEEccccccEEEccccEEcccccEEEEEcccccccHHHHHHHHHccccccEEEEEcccccEEEEEEccccccccEEEcccccEEEEEEccHHHEEEEEEcccccccHHHHHHccccccccccccccccEEEEEEccccccHHHHHHccccccccHHcccccEEEEEcccccEEEEEEcccccEEEEEEEEEEEccEEEEEEEcccEEEEEEc
Coil and Loop (DISEMBL)
MKLLSSFIIFIFplvfpcvilssksyqqlqlpgvvgpeslafdcngegpyvgvsdgrILKWKaansgwtefattaphrareicdgstnttleplcgrplgikfnpvtcdLYIADAYFGlmvvgpnggqaqqlassaggipfrftndldidpntgivyftdssiyfqRRQYFMSIatgdrsgrllkydplkknVTVMYNglsfpngvalsnnNSFLLLAESATLKILRFWLqgerttytpqlfaemprfpdniksdskgEFWIAMNSArgkiesnkktafceetakpwflrdpvgvkfdvngnvvdvldgnegntlnSVSEVQEYGEYLytgssvqpyVVVIKA
Flexible Loop (DISEMBL)
MKLLSSFIIFIFPLVFPCVILSSKSYQQLQLPGVVGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSiatgdrsgrllkYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYtpqlfaemprfpDNIKSDSKGEFWIAMNSargkiesnkkTAFCEETAKPWFLRDPVGVKFDVNGNVVDvldgnegntlNSVSEVQEYGEYlytgssvqpYVVVIKA
Low Complexity Region (SEG)
MKLLSSFIIFIFPLVFPCVILSSKSYQQLQLPGVVGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSFPNGValsnnnsflllaesaTLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFdvngnvvdvldgnegnTLNSVSEVQEYGEYLYTGSSVQPYVVVIKA
Disordered region (IsUnstruct)
***LSSFIIFIFPLVFPCVILSSKSYQQLQLPGVVGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFP*******KGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEGNTLNSVSEVQEYGEYLYTGSSVQPYVVVI**
Disordered Region (DISOPRED)
MKLLSSFIIFIFPLVFPCVILSSKSYQQLQLPGVVGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEGNTLNSVSEVQEYGEYLYTGSSVQPYVVVIKA
Disordered Region (DISEMBL)
MKLLSSFIIFIFPLVFPCVILSSKSYQQLQLPGVVGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEGNTLNSVSEVQEYGEYLYTGSSVQPYVVVIKA
Disordered Region (DISPRO)
*KLLSSFIIFIFPLVFPCVILSSKSYQQLQLPGVVGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEGNTLNSVSEVQEYGEYLYTGSSVQPYVVVIKA
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKLLSSFIIFIFPLVFPCVILSSKSYQQLQLPGVVGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEGNTLNSVSEVQEYGEYLYTGSSVQPYVVVIKA
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	343	2.2.26 [Sep-21-2011]
P92976	329	Strictosidine synthase 3	no	no	0.860	0.896	0.404	3e-54
P94111	335	Strictosidine synthase 1	no	no	0.865	0.886	0.381	9e-51
P68175	344	Strictosidine synthase OS	N/A	no	0.819	0.816	0.356	1e-50
P68174	342	Strictosidine synthase (F	N/A	no	0.819	0.821	0.356	1e-50
P18417	352	Strictosidine synthase OS	N/A	no	0.842	0.821	0.338	5e-45
Q3T0E5	412	Adipocyte plasma membrane	yes	no	0.865	0.720	0.325	8e-39
Q7TP48	376	Adipocyte plasma membrane	yes	no	0.848	0.773	0.328	5e-38
B5X3B2	416	Adipocyte plasma membrane	N/A	no	0.886	0.730	0.325	7e-38
Q5ZIF1	415	Adipocyte plasma membrane	yes	no	0.851	0.703	0.337	1e-37
Q9HDC9	416	Adipocyte plasma membrane	yes	no	0.854	0.704	0.326	2e-37

>sp|P92976|STS3_ARATH Strictosidine synthase 3 OS=Arabidopsis thaliana GN=SS3 PE=2 SV=2

 Score =  212 bits (540), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 131/324 (40%), Positives = 176/324 (54%), Gaps = 29/324 (8%)

Query: 25  SYQQLQLPG-VVGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREIC 83
           S+Q+L +PG   GPE+ AFD  G+G Y GV+ G+ILK+     G+ +FA         +C
Sbjct: 28  SFQKLPVPGNRTGPEAFAFDSTGKGFYTGVTGGKILKY-LPKKGYVDFAQITNSSKSSLC 86

Query: 84  DGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFGLMVVGPNGGQAQQLASSAGGIPFRF 143
           DG+  TT    CGRP GI FN  T DLY+ADA  GL V+   GG A+++A S GG PF F
Sbjct: 87  DGALGTTNVEKCGRPAGIAFNTKTGDLYVADAALGLHVIPRRGGLAKKIADSVGGKPFLF 146

Query: 144 TNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSFP 203
            + LD+DP TG+VYFT  S  F  R    ++AT D +G+  KYDP KK VTV+  GLS  
Sbjct: 147 LDGLDVDPTTGVVYFTSFSSTFGPRDVLKAVATKDSTGKFFKYDPSKKVVTVLMEGLSGS 206

Query: 204 NGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKS-DSKGEFWI 262
            G A+S++ SF+L+ +     I R+W++G +   T + F      PDNIK   S G FW+
Sbjct: 207 AGCAVSSDGSFVLVGQFTKSNIKRYWIKGSKAG-TSEDFTNSVSNPDNIKRIGSTGNFWV 265

Query: 263 A--MNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDV--LDGNEGNTLNSV 318
           A  +NSA G                     +P  VK    G V+    L    G+TL  V
Sbjct: 266 ASVVNSATGPT-------------------NPSAVKVSSAGKVLQTIPLKDKFGDTL--V 304

Query: 319 SEVQEYGEYLYTGSSVQPYVVVIK 342
           SEV EY   LY G+   P+  ++K
Sbjct: 305 SEVNEYKGQLYIGALFGPFAGILK 328

Catalyzes the stereospecific condensation of tryptamine with secologanin to form strictosidine, the key intermediate of indole alkaloid biosynthesis.
Arabidopsis thaliana (taxid: 3702)
EC: 4EC: .EC: 3EC: .EC: 3EC: .EC: 2

>sp|P94111|STS1_ARATH Strictosidine synthase 1 OS=Arabidopsis thaliana GN=SS1 PE=2 SV=2

 Score =  201 bits (510), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 123/322 (38%), Positives = 174/322 (54%), Gaps = 25/322 (7%)

Query: 25  SYQQLQLPGV-VGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREIC 83
           S+Q+L +P    GPE+ AFD  G+G Y GVS G+ILK+    +G+ +FA          C
Sbjct: 26  SFQKLPVPETRSGPEAFAFDSTGKGFYTGVSGGKILKY-LPETGYVDFAQITESSNSSWC 84

Query: 84  DGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFGLMVVGPNGGQAQQLASSAGGIPFRF 143
           DG+  T L   CGRP GI FN  T DLY+ADA  GL V+ P GG A ++  S  G PF+F
Sbjct: 85  DGTIGTALAGRCGRPAGIAFNEKTGDLYVADAPLGLHVISPAGGLATKITDSVDGKPFKF 144

Query: 144 TNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSFP 203
            + LD+DP TG+VYFT  S  F   Q  +++   D +G+L KYDP  K VTV+  GLS  
Sbjct: 145 LDGLDVDPTTGVVYFTSFSSRFSPIQVLIALGLKDATGKLYKYDPSTKVVTVLMEGLSGS 204

Query: 204 NGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKS-DSKGEFWI 262
            G A+S++ SF+L+++     I R+W++G +   + + F      PDNIK   S G FW+
Sbjct: 205 AGCAVSSDGSFVLVSQFTKSNIKRYWIKGPKAG-SSEDFTNSVSNPDNIKRIGSTGNFWV 263

Query: 263 AMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDV--LDGNEGNTLNSVSE 320
           A    +  + +N                 P  VK + NG V+    L    G+TL  +SE
Sbjct: 264 ASVVNKIIVPTN-----------------PSAVKVNSNGEVLQTIPLKDKFGDTL--LSE 304

Query: 321 VQEYGEYLYTGSSVQPYVVVIK 342
           V E+   LY G+   P+  ++K
Sbjct: 305 VNEFEGNLYIGTLTGPFAGILK 326

Catalyzes the stereospecific condensation of tryptamine with secologanin to form strictosidine, the key intermediate of indole alkaloid biosynthesis.

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

>sp|P68175|STSY_RAUSE Strictosidine synthase OS=Rauvolfia serpentina GN=STR1 PE=1 SV=1

 Score =  200 bits (509), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 106/297 (35%), Positives = 165/297 (55%), Gaps = 16/297 (5%)

Query: 36  GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLC 95
            P S  FD   +G Y  V DGR++K++  NSG+ +FA  +P+  +  C+ ST+    PLC
Sbjct: 42  APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLC 101

Query: 96  GRPLGIKFNPVTCDLYIADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGI 155
           GR   I +N     LYI D Y+ L VVG  GG A QLA+S  G+PF++   + +D  TGI
Sbjct: 102 GRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGI 161

Query: 156 VYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFL 215
           VYFTD S  +  R     + T D++GRL+KYDP  K  T++   L  P G  +S ++SF+
Sbjct: 162 VYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFV 221

Query: 216 LLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNSARGKIESNK 275
           L+AE  + +I+++WL+G +   T ++  ++P  P NIK ++ G FW+   S+  +++ N 
Sbjct: 222 LVAEFLSHQIVKYWLEGPKKG-TAEVLVKIPN-PGNIKRNADGHFWV---SSSEELDGNM 276

Query: 276 KTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEGNTLNSVSEVQEYGEYLYTGS 332
                          DP G+KFD  GN+++V+            ++QE+   LY G+
Sbjct: 277 HGRV-----------DPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQEHDGLLYIGT 322

Catalyzes the stereospecific condensation of tryptamine with secologanin to form strictosidine, the key intermediate of indole alkaloid biosynthesis.

Rauvolfia serpentina (taxid: 4060)

EC: 4

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

>sp|P68174|STSY_RAUMA Strictosidine synthase (Fragment) OS=Rauvolfia mannii GN=STR1 PE=3 SV=1

 Score =  200 bits (509), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 106/297 (35%), Positives = 165/297 (55%), Gaps = 16/297 (5%)

Query: 36  GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLC 95
            P S  FD   +G Y  V DGR++K++  NSG+ +FA  +P+  +  C+ ST+    PLC
Sbjct: 40  APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLC 99

Query: 96  GRPLGIKFNPVTCDLYIADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGI 155
           GR   I +N     LYI D Y+ L VVG  GG A QLA+S  G+PF++   + +D  TGI
Sbjct: 100 GRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGI 159

Query: 156 VYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFL 215
           VYFTD S  +  R     + T D++GRL+KYDP  K  T++   L  P G  +S ++SF+
Sbjct: 160 VYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFV 219

Query: 216 LLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNSARGKIESNK 275
           L+AE  + +I+++WL+G +   T ++  ++P  P NIK ++ G FW+   S+  +++ N 
Sbjct: 220 LVAEFLSHQIVKYWLEGPKKG-TAEVLVKIPN-PGNIKRNADGHFWV---SSSEELDGNM 274

Query: 276 KTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEGNTLNSVSEVQEYGEYLYTGS 332
                          DP G+KFD  GN+++V+            ++QE+   LY G+
Sbjct: 275 HGRV-----------DPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQEHDGLLYIGT 320

Catalyzes the stereospecific condensation of tryptamine with secologanin to form strictosidine, the key intermediate of indole alkaloid biosynthesis.

Rauvolfia mannii (taxid: 4062)

EC: 4

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

>sp|P18417|STSY_CATRO Strictosidine synthase OS=Catharanthus roseus GN=STR1 PE=1 SV=2

 Score =  181 bits (460), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 104/307 (33%), Positives = 164/307 (53%), Gaps = 18/307 (5%)

Query: 37  PESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCG 96
           P +  FD   +G Y  V DGR++K++  NSG+T+FA  +P   +  C+ ST+    PLCG
Sbjct: 47  PNAFTFDSTDKGFYTSVQDGRVIKYEGPNSGFTDFAYASPFWNKAFCENSTDPEKRPLCG 106

Query: 97  RPLGIKFNPVTCDLYIADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIV 156
           R   I ++     +YI D ++ L VVG  GG A QLA+S  G+PF++   + +D  TGIV
Sbjct: 107 RTYDISYDYKNSQMYIVDGHYHLCVVGKEGGYATQLATSVQGVPFKWLYAVTVDQRTGIV 166

Query: 157 YFTD-SSIYFQRRQYFMSIA-TGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSF 214
           YFTD SSI+    +    I  T DR+GRL+KYDP  K  T++   L  P G  +S + SF
Sbjct: 167 YFTDVSSIHDDSPEGVEEIMNTSDRTGRLMKYDPSTKETTLLLKELHVPGGAEISADGSF 226

Query: 215 LLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNSARGKIESN 274
           +++AE  + +I+++WL+G +   + +    +P  P NIK +S G FW+   S+  +++  
Sbjct: 227 VVVAEFLSNRIVKYWLEGPKKG-SAEFLVTIPN-PGNIKRNSDGHFWV---SSSEELDGG 281

Query: 275 KKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEGNTLNSVSEVQEYGEYLYTGSSV 334
           +                  G+KFD  GN++ V+            ++QE+   LY GS  
Sbjct: 282 QHGRVVSR-----------GIKFDGFGNILQVIPLPPPYEGEHFEQIQEHDGLLYIGSLF 330

Query: 335 QPYVVVI 341
              V ++
Sbjct: 331 HSSVGIL 337

Catalyzes the stereospecific condensation of tryptamine with secologanin to form strictosidine, the key intermediate of indole alkaloid biosynthesis.

Catharanthus roseus (taxid: 4058)

EC: 4

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

>sp|Q3T0E5|APMAP_BOVIN Adipocyte plasma membrane-associated protein OS=Bos taurus GN=APMAP PE=2 SV=1

 Score =  161 bits (407), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 106/326 (32%), Positives = 159/326 (48%), Gaps = 29/326 (8%)

Query: 34  VVGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEP 93
           +VGPES+A    G+  + G +DGR++K +           + P + R+          EP
Sbjct: 98  LVGPESIA--NIGDVMFTGTADGRVVKLENGEVETIARFGSGPCKTRDD---------EP 146

Query: 94  LCGRPLGIKFNPVTCDLYIADAYFGLMVVGPNGGQAQQLASSAGGIPFR---FTNDLDID 150
            CGRPLGI+  P    L++ DAY GL  V P   + + L SS   I  R   F NDL + 
Sbjct: 147 ACGRPLGIRAGP-NGTLFVVDAYKGLFEVNPWKREVKLLLSSETPIEGRKMSFLNDLTVT 205

Query: 151 PNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVALSN 210
            +   +YFTDSS  +QRR Y + +  G   GRLL+YD   K V V+ + L FPNGV LS 
Sbjct: 206 RDGRKIYFTDSSSKWQRRDYLLLLMEGTDDGRLLEYDTQTKEVKVLLDHLRFPNGVQLSP 265

Query: 211 NNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNSARGK 270
              F+L+ E A ++I RF++ G            +P FPDNI++ S G +W++M + R  
Sbjct: 266 AEDFVLVVELAMVRIRRFYVSGLMKGGADVFVENLPGFPDNIRASSSGGYWVSMAAIRAN 325

Query: 271 --------------IESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEGNTLN 316
                         ++      F +ET   +  R  + ++   +G  +  L   EG  + 
Sbjct: 326 PGFSMLDFLSERPFLKKVIFKLFSQETVMKFVPRYSLVLELSDSGTFLRSLHDPEGQVVT 385

Query: 317 SVSEVQEYGEYLYTGSSVQPYVVVIK 342
            VSE  E+  +LY GS   PY+  ++
Sbjct: 386 YVSEAHEHSGHLYLGSFRAPYLCRLR 411

Exhibits strong arylesterase activity with beta-naphthyl acetate and phenyl acetate. May play a role in adipocyte differentiation.

Bos taurus (taxid: 9913)

>sp|Q7TP48|APMAP_RAT Adipocyte plasma membrane-associated protein OS=Rattus norvegicus GN=Apmap PE=2 SV=2

 Score =  158 bits (400), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 105/320 (32%), Positives = 150/320 (46%), Gaps = 29/320 (9%)

Query: 36  GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLC 95
           GPES+     G+  + G +DGR++K +           + P + R+          EP C
Sbjct: 61  GPESIV--NIGDVLFTGTADGRVVKLENGEIETIARFGSGPCKTRDD---------EPTC 109

Query: 96  GRPLGIKFNPVTCDLYIADAYFGLMVVGPNGGQAQQLASSAG---GIPFRFTNDLDIDPN 152
           GRPLGI+  P    L++ DAY GL  V P     + L SS     G    F NDL I  +
Sbjct: 110 GRPLGIRVGP-NGTLFVVDAYKGLFEVNPQKRSVKLLLSSETPIEGKKMSFVNDLTITRD 168

Query: 153 TGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNN 212
              +YFTDSS  +QRR Y + +  G   GRLL+YD + K V V+ + L FPNGV LS   
Sbjct: 169 GRKIYFTDSSSKWQRRDYLLLVMEGTDDGRLLEYDTVTKEVKVLLDQLQFPNGVQLSPEE 228

Query: 213 SFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNSARGK-- 270
            F+L+AE+A  +I R ++ G            MP FPDNI+  S G +W+A  + R    
Sbjct: 229 DFVLVAETAMARIRRVYVSGLMKGGADMFVENMPGFPDNIRPSSSGGYWVAAATIRANPG 288

Query: 271 ------------IESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEGNTLNSV 318
                       I+      F +ET   +  R  + ++   +G     L   +G  +  V
Sbjct: 289 FSMLDFLSDKPFIKRMIFKLFSQETVMKFVPRYSLVLEVSDSGAFRRSLHDPDGQVVTYV 348

Query: 319 SEVQEYGEYLYTGSSVQPYV 338
           SE  E+  YLY GS   P++
Sbjct: 349 SEAHEHDGYLYLGSFRSPFI 368

Exhibits strong arylesterase activity with beta-naphthyl acetate and phenyl acetate. May play a role in adipocyte differentiation.

Rattus norvegicus (taxid: 10116)

>sp|B5X3B2|APMAP_SALSA Adipocyte plasma membrane-associated protein OS=Salmo salar GN=apmap PE=2 SV=1

 Score =  158 bits (399), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 108/332 (32%), Positives = 155/332 (46%), Gaps = 28/332 (8%)

Query: 24  KSYQQLQLPGVVGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREIC 83
           +  Q+L    +VGPES+A    G+  Y G +DG+I+K +  +       T      +  C
Sbjct: 88  REAQRLFEDQLVGPESIA--NFGDLIYTGTADGKIVKIEGKS------ITVIARLGKPPC 139

Query: 84  DGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFGLMVVGPNGGQAQQLASSA---GGIP 140
           DGS     EP CGRPLGI+  P    L++ADAY GL  V P  G+   L S+    GG  
Sbjct: 140 DGSREQ--EPSCGRPLGIRVGP-NGTLFVADAYLGLFKVNPVTGEVTNLVSAGQMVGGRR 196

Query: 141 FRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGL 200
             F NDLD+  +   VYFTDSS  +QRR Y   I      GR+L+YD   K VTV+   L
Sbjct: 197 LSFVNDLDVTQDGRKVYFTDSSSRWQRRDYLHLIMEATADGRVLEYDTETKEVTVLMENL 256

Query: 201 SFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEF 260
            F NG+ L  +   +L+AE+   +I R  + G            +P FPDNI+  S G +
Sbjct: 257 RFANGIQLFPDEESVLVAETTMARIRRVHVSGLNKGGMDTFVDNLPGFPDNIRRSSSGGY 316

Query: 261 WIAMNSARGK--------------IESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDV 306
           W+AM++ R                I+      F ++    +  R  + ++   +G  +  
Sbjct: 317 WVAMSAVRPNPGFSMLDFLSQKPWIKKLIFKLFSQDVLMKFVPRYSLVIELQESGACMRS 376

Query: 307 LDGNEGNTLNSVSEVQEYGEYLYTGSSVQPYV 338
                G     VSE  E+  +LY GS   PY+
Sbjct: 377 FHDPHGMVAAYVSEAHEHDGHLYLGSFRSPYL 408

Salmo salar (taxid: 8030)

>sp|Q5ZIF1|APMAP_CHICK Adipocyte plasma membrane-associated protein OS=Gallus gallus GN=APMAP PE=2 SV=1

 Score =  157 bits (397), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 109/323 (33%), Positives = 152/323 (47%), Gaps = 31/323 (9%)

Query: 34  VVGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTL-E 92
           +VGPES+     G+  + G +DG+ILK +       E  T A      I  G   T   E
Sbjct: 98  LVGPESIV--NIGDVLFTGTADGKILKIEDG-----EVQTVA-----RIGHGPCGTPEDE 145

Query: 93  PLCGRPLGIKFNPVTCDLYIADAYFGLMVVGPNGGQAQQLASSAG---GIPFRFTNDLDI 149
           P CGRPLGI+  P    L++ADAY+GL  V P  G+ + L S+     G    F NDL +
Sbjct: 146 PTCGRPLGIRVGP-NNTLFVADAYYGLYEVNPGTGETKMLVSTKTLIEGQKLSFLNDLTV 204

Query: 150 DPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVALS 209
             +   +YFTDSS  +QRR +   +  G   GRLL+YD + K V V+  GL FPNGV LS
Sbjct: 205 TQDGRKIYFTDSSSKWQRRDFLFLVMEGTDDGRLLEYDTVTKEVKVLMVGLRFPNGVQLS 264

Query: 210 NNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNSARG 269
               F+L+ E+A  +I R+++ G            MP  PDNI+  S G +W+AM   R 
Sbjct: 265 PAEDFVLVLETAMARIRRYYVSGLMKGGADMFVENMPGLPDNIRLSSSGGYWVAMPVVRP 324

Query: 270 K--------------IESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEGNTL 315
                          I+        +ET      +  + V+    G+         G T+
Sbjct: 325 NPGFSMLDFLSEKPWIKRMIFKLLSQETVTKLLPKRSLVVELSETGSYRRSFHDPTGLTV 384

Query: 316 NSVSEVQEYGEYLYTGSSVQPYV 338
             VSE  E+  YLY GS   P++
Sbjct: 385 PYVSEAHEHNGYLYLGSFRSPFI 407

Gallus gallus (taxid: 9031)

>sp|Q9HDC9|APMAP_HUMAN Adipocyte plasma membrane-associated protein OS=Homo sapiens GN=APMAP PE=1 SV=2

 Score =  156 bits (395), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 105/322 (32%), Positives = 156/322 (48%), Gaps = 29/322 (9%)

Query: 34  VVGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEP 93
           +VGPES+A    G+  + G +DGR++K +           + P + R+          EP
Sbjct: 99  LVGPESIAH--IGDVMFTGTADGRVVKLENGEIETIARFGSGPCKTRDD---------EP 147

Query: 94  LCGRPLGIKFNPVTCDLYIADAYFGLMVVGPNGGQAQQLASSAGGIP---FRFTNDLDID 150
           +CGRPLGI+  P    L++ADAY GL  V P   + + L SS   I      F NDL + 
Sbjct: 148 VCGRPLGIRAGP-NGTLFVADAYKGLFEVNPWKREVKLLLSSETPIEGKNMSFVNDLTVT 206

Query: 151 PNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVALSN 210
            +   +YFTDSS  +QRR Y + +  G   GRLL+YD + + V V+ + L FPNGV LS 
Sbjct: 207 QDGRKIYFTDSSSKWQRRDYLLLVMEGTDDGRLLEYDTVTREVKVLLDQLRFPNGVQLSP 266

Query: 211 NNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMN----- 265
              F+L+AE+   +I R ++ G            MP FPDNI+  S G +W+ M+     
Sbjct: 267 AEDFVLVAETTMARIRRVYVSGLMKGGADLFVENMPGFPDNIRPSSSGGYWVGMSTIRPN 326

Query: 266 ---------SARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEGNTLN 316
                    S R  I+      F +ET   +  R  + ++   +G     L   +G    
Sbjct: 327 PGFSMLDFLSERPWIKRMIFKLFSQETVMKFVPRYSLVLELSDSGAFRRSLHDPDGLVAT 386

Query: 317 SVSEVQEYGEYLYTGSSVQPYV 338
            +SEV E+  +LY GS   P++
Sbjct: 387 YISEVHEHDGHLYLGSFRSPFL 408

Exhibits strong arylesterase activity with beta-naphthyl acetate and phenyl acetate. May play a role in adipocyte differentiation.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	343
356526701	349	PREDICTED: strictosidine synthase-like [	0.921	0.905	0.591	1e-104
449464826	350	PREDICTED: strictosidine synthase 1-like	0.915	0.897	0.578	1e-104
449525752	350	PREDICTED: LOW QUALITY PROTEIN: strictos	0.915	0.897	0.575	1e-103
255546951	352	strictosidine synthase, putative [Ricinu	0.941	0.917	0.536	1e-103
255646184	349	unknown [Glycine max]	0.921	0.905	0.585	1e-102
356558999	347	PREDICTED: strictosidine synthase-like [	0.979	0.968	0.555	2e-99
224101613	263	predicted protein [Populus trichocarpa]	0.758	0.988	0.601	3e-90
297742774	653	unnamed protein product [Vitis vinifera]	0.912	0.479	0.497	1e-85
296085255	315	unnamed protein product [Vitis vinifera]	0.874	0.952	0.493	1e-84
296090370	322	unnamed protein product [Vitis vinifera]	0.886	0.944	0.495	2e-84

>gi|356526701|ref|XP_003531955.1| PREDICTED: strictosidine synthase-like [Glycine max]

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 191/323 (59%), Positives = 238/323 (73%), Gaps = 7/323 (2%)

Query: 24  KSYQQLQLP-GVVGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREI 82
           KSY QL LP  V G ES+AFDC+G+GPYVGVSDGRILKW+     W +FA T+PHR +++
Sbjct: 31  KSYSQLDLPHSVFGSESVAFDCHGKGPYVGVSDGRILKWQETKREWIDFAVTSPHRNKKL 90

Query: 83  CDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFGLMVVGPNGGQAQQLASSAGGIPFR 142
           CDG  N  +E +CGRPLG+KFN VTC+LYIADAYFGL+VVGP+GG A+QLA+SA G+PFR
Sbjct: 91  CDGLQNDKMESMCGRPLGLKFNTVTCELYIADAYFGLLVVGPSGGVAKQLATSAEGVPFR 150

Query: 143 FTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSF 202
           FTN LDID  TG VYFTDSSI FQRR Y   I +GDR+GRLLKY P  ++V V+  GL+F
Sbjct: 151 FTNALDIDTKTGEVYFTDSSILFQRRVYISIILSGDRTGRLLKYVPSTQSVHVLVKGLAF 210

Query: 203 PNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQL--FAEMPRFPDNIKSDSKGEF 260
           PNGVALS +NSF+L+AES T KIL+  L+  +T     +  FA++PR PDNIK ++KGEF
Sbjct: 211 PNGVALSKDNSFILVAESTTFKILKIQLRDSKTNNNNNIEPFAQVPRSPDNIKRNNKGEF 270

Query: 261 WIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEGNTLNSVSE 320
           W+A NS RG I+   K     ET  PW   DPV +KFD  G  + VLDG  G  L+SVSE
Sbjct: 271 WVAQNSGRGLIQ---KLGNEIETTLPWNA-DPVAIKFDEKGRAIVVLDGEYGRQLDSVSE 326

Query: 321 VQEYGEYLYTGSSVQPYVVVIKA 343
           V+E+   L+ GS+VQP++ +IKA
Sbjct: 327 VEEHEGSLWIGSAVQPFIGLIKA 349

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464826|ref|XP_004150130.1| PREDICTED: strictosidine synthase 1-like [Cucumis sativus]

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 188/325 (57%), Positives = 237/325 (72%), Gaps = 11/325 (3%)

Query: 25  SYQQLQLPG-VVGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREIC 83
           + + ++LPG V GPES+AFDC GEGPY  VSDGRILKWK  + GWT+FA T+P+R  + C
Sbjct: 26  AIEAVELPGGVFGPESIAFDCRGEGPYASVSDGRILKWKGPHLGWTQFALTSPNREGKEC 85

Query: 84  DGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFGLMVVGPNGGQAQQLASSAGGIPFRF 143
           DG   +  E  CGRPLGIKF+P TCDLYIADAYFGL+ VGP GG A+QLA+SA G+P RF
Sbjct: 86  DGQPQS--EAACGRPLGIKFHPTTCDLYIADAYFGLLAVGPKGGLARQLATSAQGVPLRF 143

Query: 144 TNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSFP 203
           TN LDIDP  GIVYFTDSSI FQRR + +SI  GD++GRLLKYDP  +NVTV+ NGL+FP
Sbjct: 144 TNALDIDPQNGIVYFTDSSILFQRRVWLLSIMNGDKTGRLLKYDPRTQNVTVLRNGLAFP 203

Query: 204 NGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIA 263
           NGVAL+ ++SFLL+AE+ TL++L+FWL+G +   T ++FA++ RFPDNIK    G+FWIA
Sbjct: 204 NGVALNADSSFLLMAETGTLQVLKFWLKGPKAN-TMEIFAQLERFPDNIKRTDNGDFWIA 262

Query: 264 MNSARGKIESNK-------KTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEGNTLN 316
           MNSARG +++          T    E   PW   DPV VK +  G V  ++DG EG  L 
Sbjct: 263 MNSARGTLDTQTWKELYRGATMKQGEVKIPWIQADPVAVKLNERGEVKGMVDGGEGQALE 322

Query: 317 SVSEVQEYGEYLYTGSSVQPYVVVI 341
           SVSEV+E    L+ GS+V+PYV +I
Sbjct: 323 SVSEVEESRGRLWIGSAVKPYVGLI 347

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449525752|ref|XP_004169880.1| PREDICTED: LOW QUALITY PROTEIN: strictosidine synthase 1-like [Cucumis sativus]

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 187/325 (57%), Positives = 236/325 (72%), Gaps = 11/325 (3%)

Query: 25  SYQQLQLPG-VVGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREIC 83
           + + ++LPG V GPES+AFDC GEGPY  VSDGRILKWK  + GWT+FA T+P+R  + C
Sbjct: 26  AIEAVELPGGVFGPESIAFDCRGEGPYASVSDGRILKWKGPHLGWTQFALTSPNREGKEC 85

Query: 84  DGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFGLMVVGPNGGQAQQLASSAGGIPFRF 143
           DG   +  E  CGRPLGIKF+P TCDLYIADAY GL+ VGP GG A+QLA+SA G+P RF
Sbjct: 86  DGQPQS--EAACGRPLGIKFHPTTCDLYIADAYXGLLAVGPKGGLARQLATSAQGVPLRF 143

Query: 144 TNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSFP 203
           TN LDIDP  GIVYFTDSSI FQRR + +SI  GD++GRLLKYDP  +NVTV+ NGL+FP
Sbjct: 144 TNALDIDPQNGIVYFTDSSILFQRRVWLLSIMNGDKTGRLLKYDPRTQNVTVLRNGLAFP 203

Query: 204 NGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIA 263
           NGVAL+ ++SFLL+AE+ TL++L+FWL+G +   T ++FA++ RFPDNIK    G+FWIA
Sbjct: 204 NGVALNADSSFLLMAETGTLQVLKFWLKGPKAN-TMEIFAQLERFPDNIKRTDNGDFWIA 262

Query: 264 MNSARGKIESNK-------KTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEGNTLN 316
           MNSARG +++          T    E   PW   DPV VK +  G V  ++DG EG  L 
Sbjct: 263 MNSARGTLDTQTWKELYRGATMKQGEVKIPWIQADPVAVKLNERGEVKGMVDGGEGQALE 322

Query: 317 SVSEVQEYGEYLYTGSSVQPYVVVI 341
           SVSEV+E    L+ GS+V+PYV +I
Sbjct: 323 SVSEVEESRGRLWIGSAVKPYVGLI 347

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255546951|ref|XP_002514533.1| strictosidine synthase, putative [Ricinus communis] gi|223546137|gb|EEF47639.1| strictosidine synthase, putative [Ricinus communis]

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 184/343 (53%), Positives = 244/343 (71%), Gaps = 20/343 (5%)

Query: 3   LLSSFIIFIFPLVFPCVILS---SKSYQQLQLPGVVGPESLAFDCNGEGPYVGVSDGRIL 59
           LLS F +    L     +L    +  Y QL LPGV+GPESLAFDCNG GPY GVSDGRIL
Sbjct: 26  LLSCFFLSFLVLAHGRFLLRDALNNYYYQLNLPGVLGPESLAFDCNGNGPYAGVSDGRIL 85

Query: 60  KWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFGL 119
           +W+    GW EFA T+ +R  ++CDGS NT LEP+CGRPLG+KF+P TCDLY+ADAYFGL
Sbjct: 86  RWQGQGKGWVEFAITSANR--KLCDGSENTDLEPICGRPLGLKFHPATCDLYVADAYFGL 143

Query: 120 MVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDR 179
           + VGPNGG A +LA+SA G+P +FTNDLDIDPN+G+VYFTDSS++++RR +  +I+  DR
Sbjct: 144 LKVGPNGGVATRLATSAEGVPLKFTNDLDIDPNSGVVYFTDSSVHYERRLFMEAISKADR 203

Query: 180 SGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTP 239
           +GRLLKYD   K V+V+Y GL+FPNGV LS +NS+LLL ES   ++L+F L        P
Sbjct: 204 TGRLLKYDLTTKKVSVLYRGLAFPNGVVLSKDNSYLLLVESMNFQVLKFPLSSYGVG-VP 262

Query: 240 QLFAEMPRFPDNIKSDSKGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDV 299
            +FA + RFPDNI+ +  G+FW+A+N+ARGK++                + DPVG++F+ 
Sbjct: 263 HVFASLDRFPDNIRRNDNGDFWVALNTARGKLQGA--------------VEDPVGIRFNE 308

Query: 300 NGNVVDVLDGNEGNTLNSVSEVQEYGEYLYTGSSVQPYVVVIK 342
            G VV V++GN G+TL+SVSE++E+   L+ GS  QPYV  +K
Sbjct: 309 YGRVVQVVNGNGGDTLDSVSEIEEHDGRLWFGSPTQPYVGTLK 351

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255646184|gb|ACU23577.1| unknown [Glycine max]

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 189/323 (58%), Positives = 236/323 (73%), Gaps = 7/323 (2%)

Query: 24  KSYQQLQLP-GVVGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREI 82
           KSY QL LP  V G ES+AFDC+G+GPYVGVSDGRILKW+     W +FA T+PHR +++
Sbjct: 31  KSYSQLDLPHSVFGSESVAFDCHGKGPYVGVSDGRILKWQETKREWIDFAVTSPHRNKKL 90

Query: 83  CDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFGLMVVGPNGGQAQQLASSAGGIPFR 142
           CDG  N  +E +CGRPLG+KFN VTC+LYIADAYFGL+VVGP+GG A+QLA+SA G+PFR
Sbjct: 91  CDGLQNDKMESMCGRPLGLKFNTVTCELYIADAYFGLLVVGPSGGVAKQLATSAEGVPFR 150

Query: 143 FTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSF 202
           FTN LDID  TG VYFTDSSI FQRR Y   I +GDR+GRLLKY P  ++V V+  GL+F
Sbjct: 151 FTNALDIDTKTGEVYFTDSSILFQRRVYISIILSGDRTGRLLKYVPSTQSVHVLVKGLAF 210

Query: 203 PNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQL--FAEMPRFPDNIKSDSKGEF 260
           PNGVALS +NSF+L+AES T KIL+  L+  +T     +  FA++PR PDNIK ++KGEF
Sbjct: 211 PNGVALSKDNSFILVAESTTFKILKIQLRDSKTNNNNNIEPFAQVPRSPDNIKRNNKGEF 270

Query: 261 WIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEGNTLNSVSE 320
           W+A NS RG ++   K     ET  PW   DPV +KFD  G  + VLDG  G  L+SVSE
Sbjct: 271 WVAQNSGRGLMQ---KLGNEIETTLPWNA-DPVAIKFDEKGRAIVVLDGEYGRQLDSVSE 326

Query: 321 VQEYGEYLYTGSSVQPYVVVIKA 343
           V+E+   L+ G +VQP++  IKA
Sbjct: 327 VEEHEGSLWIGFAVQPFIGFIKA 349

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356558999|ref|XP_003547789.1| PREDICTED: strictosidine synthase-like [Glycine max]

 Score =  368 bits (944), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 194/349 (55%), Positives = 249/349 (71%), Gaps = 13/349 (3%)

Query: 4   LSSFIIFIFPLVFPCVILSS-------KSYQQLQLP-GVVGPESLAFDCNGEGPYVGVSD 55
           LS+  +F+F L    +   +       KSY QL LP  V G ES+AFDC+G+GPYVGVSD
Sbjct: 3   LSTLFLFLFHLAHAALSDEATFIRDGLKSYSQLDLPHSVFGSESVAFDCHGKGPYVGVSD 62

Query: 56  GRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA 115
           GRILKW      W +FA T+PHR +++CDG TN  +E +CGRPLG+KFN +TC+LYIADA
Sbjct: 63  GRILKWHETKREWIDFAVTSPHRNKKLCDGLTNDKMESMCGRPLGLKFNTLTCELYIADA 122

Query: 116 YFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIA 175
           YFGL+VVGP GG A+QLA+SA G+PFRFTN LDID  TG VYFTDSSI FQRR Y   I 
Sbjct: 123 YFGLLVVGPGGGVAKQLATSAEGVPFRFTNALDIDTKTGEVYFTDSSIMFQRRVYISIIL 182

Query: 176 TGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERT 235
           +GDR+GRLLKY P  ++V V+  GL+FPNGVALS +NSF+++AES T KIL+  ++  +T
Sbjct: 183 SGDRTGRLLKYVPSTQSVHVLVKGLAFPNGVALSKDNSFIIVAESTTFKILKIQVRDSKT 242

Query: 236 TYTP-QLFAEMPRFPDNIKSDSKGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVG 294
                + FA++PR PDNIK ++KGEFW+A+NS RG I+  +      ET  PW   DPV 
Sbjct: 243 NNNNIEPFAQVPRSPDNIKRNAKGEFWVALNSGRGLIQKLENEI---ETTLPWNA-DPVA 298

Query: 295 VKFDVNGNVVDVLDGNEGNTLNSVSEVQEYGEYLYTGSSVQPYVVVIKA 343
           +KFD  G  ++VLDG  G  L+SVSEV+E+   L+ GS+VQPY+ +IKA
Sbjct: 299 IKFDEKGRAIEVLDGEYGRQLDSVSEVEEHEGSLWIGSAVQPYIGLIKA 347

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101613|ref|XP_002312353.1| predicted protein [Populus trichocarpa] gi|222852173|gb|EEE89720.1| predicted protein [Populus trichocarpa]

 Score =  337 bits (865), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 157/261 (60%), Positives = 201/261 (77%), Gaps = 1/261 (0%)

Query: 82  ICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFGLMVVGPNGGQAQQLASSAGGIPF 141
           +CDGSTNT LEP+CGRPLG+KFN  TCDLYIADAY+GL+VVGP GG A QLA+SA G+PF
Sbjct: 1   MCDGSTNTKLEPVCGRPLGLKFNSATCDLYIADAYYGLLVVGPEGGVATQLAASAEGVPF 60

Query: 142 RFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLS 201
           RF N LD+D  TG+VYFTDSSIYFQRR+Y ++I + D++GRL+KYDP  K VTV+  GL+
Sbjct: 61  RFMNALDVDSRTGVVYFTDSSIYFQRREYLLAIISADKTGRLMKYDPNSKKVTVLLKGLA 120

Query: 202 FPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFW 261
           FPNGVA+S +NSF+L+AES T++IL+F+L G    +  + F ++ RFPDNIK  + GEFW
Sbjct: 121 FPNGVAISKDNSFILVAESFTMRILKFYLVGSE-IHGQETFIQLGRFPDNIKRTANGEFW 179

Query: 262 IAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEGNTLNSVSEV 321
           +A+N+ RGKI     T   +ET+  WF+ DPV V+    G VV+VLDGN GN L+SVSEV
Sbjct: 180 VALNTGRGKIRRLDSTKLQQETSIDWFVDDPVAVRLTSGGKVVNVLDGNGGNALDSVSEV 239

Query: 322 QEYGEYLYTGSSVQPYVVVIK 342
           +EY   L+ GSS++PYV  IK
Sbjct: 240 EEYSGLLWLGSSMKPYVGYIK 260

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742774|emb|CBI35408.3| unnamed protein product [Vitis vinifera]

 Score =  322 bits (826), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 169/340 (49%), Positives = 220/340 (64%), Gaps = 27/340 (7%)

Query: 4   LSSFIIFIFPLV--FPCV-ILSSKSYQQLQLP-GVVGPESLAFDCNGEGPYVGVSDGRIL 59
           LS F IF F L+  F CV    +  Y  L+LP GV GPES+AFDCNG+GPY G+SDGRIL
Sbjct: 3   LSQFFIFSFILISLFGCVNSHQALKYNTLELPSGVSGPESIAFDCNGDGPYTGISDGRIL 62

Query: 60  KWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFGL 119
           KW+ +  GW EFA T+P R  + CDGS N  +E +CGRPLG+KFN  TCDLYIADAYFGL
Sbjct: 63  KWQGSKHGWKEFAITSPFRIPKFCDGSLNPAMEQVCGRPLGLKFNEATCDLYIADAYFGL 122

Query: 120 MVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDR 179
           +VVG NGG A+Q+A SA G+PFRFTN LDID NTG+VYFTD+S  FQR  Y +++  GD+
Sbjct: 123 LVVGQNGGVAKQVAISAEGVPFRFTNALDIDQNTGVVYFTDTSTIFQRWAYAIAMQIGDK 182

Query: 180 SGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTP 239
           +GRLLKYDP  K VTV+  GLSF NGVALS +  F+L+ E+   K+ R+WLQ +++  + 
Sbjct: 183 TGRLLKYDPRTKEVTVLLRGLSFSNGVALSEDKDFVLVTETTAAKVTRYWLQCQKSQLS- 241

Query: 240 QLFAEMPRFPDNIKSDSKGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDV 299
             F ++   PDNI+ +  GEFW+A N+                  +P     P  V+ + 
Sbjct: 242 DTFTQLVGCPDNIQRNIHGEFWVAQNNC----------------GRPEVKVRP--VRLNK 283

Query: 300 NGNVVDVLDGNEGNTLNSVSEVQEYGEYLYTGSSVQPYVV 339
            G +V+ L  + G     +SEVQE    L+ GS +  Y+V
Sbjct: 284 EGKIVEELSVDVG----PLSEVQEKDNSLWLGSVILSYIV 319

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085255|emb|CBI28987.3| unnamed protein product [Vitis vinifera]

 Score =  319 bits (818), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 160/324 (49%), Positives = 214/324 (66%), Gaps = 24/324 (7%)

Query: 19  VILSSKSYQQLQLP-GVVGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPH 77
           +++ +  Y  L+LP GV GPES+AFDCNG+GPY G+SDGRILKW+ +  GW EFA T+P 
Sbjct: 14  IVMRTFKYNTLELPSGVSGPESIAFDCNGDGPYTGISDGRILKWQGSKHGWKEFAITSPF 73

Query: 78  RAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFGLMVVGPNGGQAQQLASSAG 137
           R  + CDGS N  +E +CGRPLG+KFN  TCDLYIADAYFGL+VVG NGG A+Q+A SA 
Sbjct: 74  RIPKFCDGSLNPAMEQVCGRPLGLKFNEATCDLYIADAYFGLLVVGQNGGVAKQVAISAE 133

Query: 138 GIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMY 197
           G+PFRFTN LDID NTG+VYFTD+S  FQR  Y +++  GD++GRLLKYDP  K VTV+ 
Sbjct: 134 GVPFRFTNALDIDQNTGVVYFTDTSTIFQRWAYAIAMQIGDKTGRLLKYDPRTKEVTVLL 193

Query: 198 NGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSK 257
            GLSF NGVALS +  F+L+ E+   K+ R+WLQG+++  +   F ++   PDNI+ +  
Sbjct: 194 RGLSFSNGVALSEDKDFVLVTETTAAKVTRYWLQGQKSQLS-DTFTQLVGCPDNIQRNIH 252

Query: 258 GEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEGNTLNS 317
           GEFW+A N+                  +P     P  V+ +  G +V+ L  + G     
Sbjct: 253 GEFWVAQNNC----------------GRPEVKVRP--VRLNKEGKIVEELSVDVG----P 290

Query: 318 VSEVQEYGEYLYTGSSVQPYVVVI 341
           +SEVQE    L+ GS +  Y+ V+
Sbjct: 291 LSEVQEKNNSLWLGSVILSYIGVL 314

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296090370|emb|CBI40189.3| unnamed protein product [Vitis vinifera]

 Score =  318 bits (816), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 163/329 (49%), Positives = 217/329 (65%), Gaps = 25/329 (7%)

Query: 15  VFPCV-ILSSKSYQQLQLPG-VVGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFA 72
           +F CV    +  Y +L+LP  V GPES+AFDCNG+GPY G+SDGRILKW+ +  GW EFA
Sbjct: 16  LFECVNSHQALKYNKLKLPSWVSGPESIAFDCNGDGPYTGISDGRILKWQGSKHGWKEFA 75

Query: 73  TTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFGLMVVGPNGGQAQQL 132
            T+P R  + C+GS N  +E +CGRPLG+KFN  TCDLYIADAYFGL+VVG NGG A+Q+
Sbjct: 76  ITSPFRIPKFCNGSINPAMEQVCGRPLGLKFNEATCDLYIADAYFGLLVVGHNGGVAKQI 135

Query: 133 ASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKN 192
           A SA G+PFRFTN LDID NTGIVYFTD+S  FQR  Y +++ TGD++GRLLKYDP  K 
Sbjct: 136 AISAEGVPFRFTNALDIDQNTGIVYFTDTSTIFQRWAYAIAMQTGDKTGRLLKYDPRTKE 195

Query: 193 VTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNI 252
           VTV+  GLSF NGVALS +  F+L+ E+ T K+ R+WL+G+++  +   F ++   PDNI
Sbjct: 196 VTVLLRGLSFSNGVALSKDKDFVLVTETTTAKVTRYWLRGQKSQLS-DTFTQLVGCPDNI 254

Query: 253 KSDSKGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEG 312
           + +  GEFW+A N+                  +P     P  V+ +  G +++ L  + G
Sbjct: 255 QRNIHGEFWVAQNNC----------------GRPELKVRP--VRLNEEGKIMEELSEDVG 296

Query: 313 NTLNSVSEVQEYGEYLYTGSSVQPYVVVI 341
                VSEVQE    L+  S + PY+ V+
Sbjct: 297 ----PVSEVQEKDNSLWLCSVIFPYISVL 321

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	343
TAIR|locus:2080575	374	AT3G57030 [Arabidopsis thalian	0.912	0.836	0.439	6e-64
TAIR|locus:2040312	376	SSL2 "strictosidine synthase-l	0.758	0.691	0.431	6.1e-56
TAIR|locus:2201841	390	SSL3 "strictosidine synthase-l	0.746	0.656	0.436	9.9e-55
TAIR|locus:504956439	395	AT5G22020 [Arabidopsis thalian	0.877	0.762	0.404	2.1e-54
TAIR|locus:2031511	329	SS3 "strictosidine synthase 3"	0.778	0.811	0.414	1.3e-51
TAIR|locus:2097488	403	LAP3 "LESS ADHERENT POLLEN 3"	0.679	0.578	0.406	9.5e-50
TAIR|locus:2080565	370	AT3G57020 [Arabidopsis thalian	0.688	0.637	0.407	1.1e-46
TAIR|locus:2080660	376	AT3G57010 [Arabidopsis thalian	0.670	0.611	0.426	1.8e-46
TAIR|locus:2031496	325	AT1G74010 [Arabidopsis thalian	0.740	0.781	0.392	6e-46
TAIR|locus:2031486	335	SS2 "strictosidine synthase 2"	0.760	0.779	0.387	7.6e-46

TAIR|locus:2080575 AT3G57030 [Arabidopsis thaliana (taxid:3702)]

 Score = 652 (234.6 bits), Expect = 6.0e-64, P = 6.0e-64
 Identities = 145/330 (43%), Positives = 189/330 (57%)

Query:    25 SYQQLQLPGVVGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICD 84
             S + + L G  GPES+AFD  GEGPYVGVSDGRILKW+    GW++FA T+ +R    C 
Sbjct:    45 SAKVVNLTGASGPESIAFDPAGEGPYVGVSDGRILKWRGEPLGWSDFAHTSSNRQE--CA 102

Query:    85 GSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFGLMVVGPNGGQAQQLASSAGGIPFRFT 144
                   LE +CGRPLG++F+  T DLYIADAYFGL+VVGP GG A+ L + A G PFRFT
Sbjct:   103 RPFAPELEHVCGRPLGLRFDKKTGDLYIADAYFGLLVVGPAGGLAKPLVTEAEGQPFRFT 162

Query:   145 NDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSFPN 204
             NDLDID    ++YFTD+S  FQRRQ+  ++   D++GR +KYD   K  TV+  GL+F N
Sbjct:   163 NDLDIDEQEDVIYFTDTSARFQRRQFLAAVLNVDKTGRFIKYDRSSKKATVLLQGLAFAN 222

Query:   205 GVXXXXXXXXXXXXXXXTLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAM 264
             GV               T KILR WL G     T Q+FAE+P FPDNI+ +S GEFW+A+
Sbjct:   223 GVALSKDRSFVLVVETTTCKILRLWLSGPNAG-THQVFAELPGFPDNIRRNSNGEFWVAL 281

Query:   265 NSARGKIE--SNKKTAFCEETAK----PWFLRD------P--VGVKFXXXXXXXXXXXXX 310
             +S +G     S  +T F +   +    P  L        P    +K              
Sbjct:   282 HSKKGLFAKLSLTQTWFRDLVLRLPISPQRLHSLFTGGIPHATAIKLSESGKVLEVLEDK 341

Query:   311 XXXTLNSVSEVQEYGEYLYTGSSVQPYVVV 340
                TL  +SEV+E    L+ GS + P++ V
Sbjct:   342 EGKTLRFISEVEEKDGKLWIGSVLVPFLGV 371

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2040312 SSL2 "strictosidine synthase-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 552 (199.4 bits), Expect = 6.1e-56, Sum P(2) = 6.1e-56
 Identities = 119/276 (43%), Positives = 161/276 (58%)

Query:    26 YQQLQLPGVVGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDG 85
             ++ +   G +GPES  FD  G+GPY G+SDGRI+KW A  S W +FA T    ARE C+G
Sbjct:    41 FRLIPTTGALGPESFVFDFFGDGPYTGLSDGRIVKWLANESRWIDFAVTTS--AREGCEG 98

Query:    86 S-TNTTLEPLCGRPLGIKFNPVTCDLYIADAYFGLMVVGPNGGQAQQLASSAGGIPFRFT 144
                +   E +CGRPLG+ F+  T DLYIADAY GL+ VGP GG A Q+         RFT
Sbjct:    99 PHEHQRTEHVCGRPLGLAFDKSTGDLYIADAYMGLLKVGPTGGVATQVLPRELNEALRFT 158

Query:   145 NDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSFPN 204
             N LDI+P TG+VYFTDSS  +QRR Y  ++ +GD++GRL+KYD  K+ VT + + L+F N
Sbjct:   159 NSLDINPRTGVVYFTDSSSVYQRRNYIGAMMSGDKTGRLMKYDNTKQ-VTTLLSNLAFVN 217

Query:   205 GVXXXXXXXXXXXXXXXTLKILRFWLQG----ERTTYTPQLFAE-MPRFPDNIKSDSKGE 259
             GV                 +ILR+WL       ++    ++FAE +P FPDNIK   +G 
Sbjct:   218 GVALSQNGDYLLVVETAMCRILRYWLNETSVKSQSHDNYEIFAEGLPGFPDNIKRSPRGG 277

Query:   260 FWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGV 295
             FW+ +N+   K+     T F    A  W  R  +G+
Sbjct:   278 FWVGLNTKHSKL-----TKFAMSNA--WLGRAALGL 306

GO:0005576 "extracellular region" evidence=ISM

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA

TAIR|locus:2201841 SSL3 "strictosidine synthase-like 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 565 (203.9 bits), Expect = 9.9e-55, P = 9.9e-55
 Identities = 117/268 (43%), Positives = 167/268 (62%)

Query:    34 VVGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTT--L 91
             V GPES+AFD  G GPY GV+DGRIL W      WT+FA T+ +R+ E+CD   +    L
Sbjct:    67 VQGPESIAFDPQGRGPYTGVADGRILFWNGTR--WTDFAYTSNNRS-ELCDPKPSLLDYL 123

Query:    92 --EPLCGRPLGIKFNPVTCDLYIADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDI 149
               E +CGRPLG++F+    DLYIADAY G+M VGP GG A  + + A G+P RFTNDLDI
Sbjct:   124 KDEDICGRPLGLRFDKKNGDLYIADAYLGIMKVGPEGGLATSVTNEADGVPLRFTNDLDI 183

Query:   150 DPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVXXX 209
             D + G VYFTDSS +FQRR++ + I +G+ SGR+LKY+P  K  T +   L FPNG+   
Sbjct:   184 D-DEGNVYFTDSSSFFQRRKFMLLIVSGEDSGRVLKYNPKTKETTTLVRNLQFPNGLSLG 242

Query:   210 XXXXXXXXXXXXTLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNSARG 269
                           ++ ++WL+GE+   T ++ A +  FPDNI+++  G+FW+A++  R 
Sbjct:   243 KDGSFFIFCEGSIGRLRKYWLKGEKAG-TSEVVALLHGFPDNIRTNKDGDFWVAVHCHRN 301

Query:   270 KIESNKKTAFCEETAKPWFLRDPVGVKF 297
              I ++    +     + +FL+ P+ VKF
Sbjct:   302 -IFTHLMAHY--PRVRKFFLKLPISVKF 326

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:504956439 AT5G22020 [Arabidopsis thaliana (taxid:3702)]

 Score = 562 (202.9 bits), Expect = 2.1e-54, P = 2.1e-54
 Identities = 132/326 (40%), Positives = 179/326 (54%)

Query:    34 VVGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTL-- 91
             + GPES+AFD  G GPY GV+DGR+L W      W +FA T+ +R+ EICD   +     
Sbjct:    73 IQGPESVAFDSLGRGPYTGVADGRVLFWDGEK--WIDFAYTSSNRS-EICDPKPSALSYL 129

Query:    92 --EPLCGRPLGIKFNPVTCDLYIADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDI 149
               E +CGRPLG++F+  T DLYIADAY GL+ VGP GG A  L + A G+P  FTNDLDI
Sbjct:   130 RNEHICGRPLGLRFDKRTGDLYIADAYMGLLKVGPEGGLATPLVTEAEGVPLGFTNDLDI 189

Query:   150 DPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVXXX 209
               + G VYFTDSSI +QRR +   + +GD +GR+LKYDP+ K   V+ + L FPNGV   
Sbjct:   190 -ADDGTVYFTDSSISYQRRNFLQLVFSGDNTGRVLKYDPVAKKAVVLVSNLQFPNGVSIS 248

Query:   210 XXXXXXXXXXXXTLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNSARG 269
                            + R+WL+GE+   T  +FA +P  PDN++++ KGEFW+A++  R 
Sbjct:   249 RDGSFFVFCEGDIGSLRRYWLKGEKAG-TTDVFAYLPGHPDNVRTNQKGEFWVALHCRRN 307

Query:   270 -----KIESNKKTAFCEE---TAKPWF-----LRDPVG--VKFXXXXXXXXXXXXXXXXT 314
                       K   F      TA+  +     LR P G  VK+                 
Sbjct:   308 YYSYLMARYPKLRMFILRLPITARTHYSFQIGLR-PHGLVVKYSPEGKLMHVLEDSEGKV 366

Query:   315 LNSVSEVQEYGEYLYTGSSVQPYVVV 340
             + SVSEV+E    L+ GS +  +V V
Sbjct:   367 VRSVSEVEEKDGKLWMGSVLMNFVAV 392

GO:0005576 "extracellular region" evidence=ISM

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2031511 SS3 "strictosidine synthase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 500 (181.1 bits), Expect = 1.3e-51, Sum P(2) = 1.3e-51
 Identities = 114/275 (41%), Positives = 150/275 (54%)

Query:     1 MKLLSSFIIFIFPLVFPCVILSSK--SYQQLQLPGV-VGPESLAFDCNGEGPYVGVSDGR 57
             M+   S I  +  L F   +LS+K  S+Q+L +PG   GPE+ AFD  G+G Y GV+ G+
Sbjct:     2 MRSFVSLISLLLLLSFSSSVLSTKKSSFQKLPVPGNRTGPEAFAFDSTGKGFYTGVTGGK 61

Query:    58 ILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYF 117
             ILK+     G+ +FA         +CDG+  TT    CGRP GI FN  T DLY+ADA  
Sbjct:    62 ILKY-LPKKGYVDFAQITNSSKSSLCDGALGTTNVEKCGRPAGIAFNTKTGDLYVADAAL 120

Query:   118 GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATG 177
             GL V+   GG A+++A S GG PF F + LD+DP TG+VYFT  S  F  R    ++AT 
Sbjct:   121 GLHVIPRRGGLAKKIADSVGGKPFLFLDGLDVDPTTGVVYFTSFSSTFGPRDVLKAVATK 180

Query:   178 DRSGRLLKYDPLKKNVTVMYNGLSFPNGVXXXXXXXXXXXXXXXTLKILRFWLQGERTTY 237
             D +G+  KYDP KK VTV+  GLS   G                   I R+W++G +   
Sbjct:   181 DSTGKFFKYDPSKKVVTVLMEGLSGSAGCAVSSDGSFVLVGQFTKSNIKRYWIKGSKAG- 239

Query:   238 TPQLFAEMPRFPDNIKS-DSKGEFWIA--MNSARG 269
             T + F      PDNIK   S G FW+A  +NSA G
Sbjct:   240 TSEDFTNSVSNPDNIKRIGSTGNFWVASVVNSATG 274

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0005618 "cell wall" evidence=IDA

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0006865 "amino acid transport" evidence=RCA

TAIR|locus:2097488 LAP3 "LESS ADHERENT POLLEN 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 518 (187.4 bits), Expect = 9.5e-50, P = 9.5e-50
 Identities = 98/241 (40%), Positives = 145/241 (60%)

Query:    34 VVGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREIC----DGSTNT 89
             V GPESL FD  G GPY G++DGR+++W     GW  F+      + E C    D +TN 
Sbjct:    82 VFGPESLEFDSLGRGPYTGLADGRVVRWMGEAIGWETFSVVTSKWSEEACVRGVDSTTNK 141

Query:    90 TL--EPLCGRPLGIKFNPVTCDLYIADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDL 147
                 E LCGRPLG++F+  T +LYIADAY+GL+VVGP GG A  LA+   G P  F NDL
Sbjct:   142 QWKHEKLCGRPLGLRFHKETGNLYIADAYYGLLVVGPEGGIATPLATHVEGKPILFANDL 201

Query:   148 DIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVX 207
             DI  N G ++FTD+S  + R  +F  +  G+ +GRLL+YDP  K   ++  GL+FPNG+ 
Sbjct:   202 DIHRN-GSIFFTDTSKRYDRANHFFILLEGESTGRLLRYDPPTKTTHIVLEGLAFPNGIQ 260

Query:   208 XXXXXXXXXXXXXXTLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNSA 267
                             +++++WL+G +     ++ A++P FPDN++ + +G+FW+A++  
Sbjct:   261 LSKDQSFLLFTETTNCRLVKYWLEGPKMGEV-EVVADLPGFPDNVRINEEGQFWVAIDCC 319

Query:   268 R 268
             R
Sbjct:   320 R 320

GO:0005739 "mitochondrion" evidence=ISM

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0010584 "pollen exine formation" evidence=RCA;IMP

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2080565 AT3G57020 [Arabidopsis thaliana (taxid:3702)]

 Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
 Identities = 99/243 (40%), Positives = 135/243 (55%)

Query:    29 LQLPGVVGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTN 88
             + +P V GPES+ FD  GEGPY  V DGRILKW+  + GW +FA T+PHR    C   + 
Sbjct:    47 IPIP-VAGPESIEFDPKGEGPYAAVVDGRILKWRGDDLGWVDFAYTSPHRGN--C---SK 100

Query:    89 TTLEPLCGRPLGIKFNPVTCDLYIADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLD 148
             T + P CGRPLG+ F   T DLYI D Y GLM VGP GG A+ +   A G    F N  D
Sbjct:   101 TEVVPTCGRPLGLTFEKKTGDLYICDGYLGLMKVGPEGGLAELIVDEAEGRKVMFANQGD 160

Query:   149 IDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVXX 208
             ID    + YF DSS  +  R  F    +G+RSGR+++YD   K   V+ + L   NG+  
Sbjct:   161 IDEEEDVFYFNDSSDKYHFRDVFFVAVSGERSGRVIRYDKKTKEAKVIMDNLVCNNGLAL 220

Query:   209 XXXXXXXXXXXXXTLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNSAR 268
                          T  + R+W++G +   T  +FA++P +PDNI+  S G+FWI ++  +
Sbjct:   221 NKDRSFLITCESGTSLVHRYWIKGPKAG-TRDIFAKVPGYPDNIRLTSTGDFWIGLHCKK 279

Query:   269 GKI 271
               I
Sbjct:   280 NLI 282

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0005773 "vacuole" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009813 "flavonoid biosynthetic process" evidence=RCA

GO:0010224 "response to UV-B" evidence=RCA

TAIR|locus:2080660 AT3G57010 [Arabidopsis thaliana (taxid:3702)]

 Score = 487 (176.5 bits), Expect = 1.8e-46, P = 1.8e-46
 Identities = 101/237 (42%), Positives = 134/237 (56%)

Query:    29 LQLPGVVGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTN 88
             + LP V GPESL FD  GEGPYVGV+DGRILKW+    GW +FA T+PHR     D  ++
Sbjct:    48 IPLP-VDGPESLEFDPQGEGPYVGVTDGRILKWRGEELGWVDFAYTSPHR-----DNCSS 101

Query:    89 TTLEPLCGRPLGIKFNPVTCDLYIADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLD 148
               + P CGRPLG+ F   T DLYI D YFG+M VGP GG A+ +   A G    F N  D
Sbjct:   102 HEVVPSCGRPLGLSFERKTGDLYICDGYFGVMKVGPEGGLAELVVDEAEGRKVMFANQGD 161

Query:   149 IDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVXX 208
             ID    I YF DSS  +  R  F    +G + GR+++YD  KK   V+ + L  PNG+  
Sbjct:   162 IDEEEDIFYFNDSSDTYHFRDVFYVSLSGTKVGRVIRYDMKKKEAKVIMDKLRLPNGLAL 221

Query:   209 XXXXXXXXXXXXXTLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMN 265
                          T    R W++G ++  T ++FA +P  PDNI+    G+FW+A++
Sbjct:   222 SKNGSFVVTCESSTNICHRIWVKGPKSG-TNEVFATLPGSPDNIRRTPTGDFWVALH 277

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

TAIR|locus:2031496 AT1G74010 [Arabidopsis thaliana (taxid:3702)]

 Score = 447 (162.4 bits), Expect = 6.0e-46, Sum P(2) = 6.0e-46
 Identities = 102/260 (39%), Positives = 137/260 (52%)

Query:     7 FIIFIFPLVFPCVILSSK-SYQQLQLPGV-VGPESLAFDCNGEGPYVGVSDGRILKWKAA 64
             F+I +  L F   + S   S+Q+L +P    GPES AFD  G G Y GVS G+ILK+   
Sbjct:     6 FVISLLLLSFSSAVFSDDASFQKLPVPDKRSGPESFAFDSTG-GFYTGVSGGKILKY-VP 63

Query:    65 NSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFGLMVVGP 124
               G+ +FA          C+G+  T     CGRP GI  N  T DLY+ADA  GL V+ P
Sbjct:    64 GKGYVDFAQITDSSNSAWCNGALGTAFAGKCGRPAGIALNSKTGDLYVADAPLGLHVISP 123

Query:   125 NGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLL 184
              GG A +LA S  G PF+F + LD+DP TG+VYFT  S  F  R+  +++   D SG+L 
Sbjct:   124 AGGLATKLADSVDGKPFKFLDGLDVDPTTGVVYFTSFSSKFGPREVLIAVGLKDASGKLF 183

Query:   185 KYDPLKKNVTVMYNGLSFPNGVXXXXXXXXXXXXXXXTLKILRFWLQGERTTYTPQLFAE 244
             KYDP  K VT +  GLS   G                   I ++W++G +   T + F+ 
Sbjct:   184 KYDPATKAVTELMEGLSGAAGCAVSSDGSFVLVSEFIKSNIKKYWIKGPKAG-TIEDFSS 242

Query:   245 MPRFPDNIKS-DSKGEFWIA 263
             +   PDNI+   S G FW+A
Sbjct:   243 LVSNPDNIRRVGSTGNFWVA 262

GO:0005576 "extracellular region" evidence=ISM

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016844 "strictosidine synthase activity" evidence=IEA

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006865 "amino acid transport" evidence=RCA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2031486 SS2 "strictosidine synthase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 452 (164.2 bits), Expect = 7.6e-46, Sum P(2) = 7.6e-46
 Identities = 103/266 (38%), Positives = 136/266 (51%)

Query:     1 MKLLSSFIIFIFPLVFPCVILSSK-SYQQLQLPGV-VGPESLAFDCNGEGPYVGVSDGRI 58
             M    S I  +  L     + S   S+Q+L +P    GPE+ AFD  G+G Y GVS G+I
Sbjct:     1 MTSFCSMISLLLLLSLSSAVFSDDASFQKLPVPETRSGPEAFAFDSTGKGFYTGVSGGKI 60

Query:    59 LKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFG 118
             LK+    +G+ +FA          CDG+  T L   CGRP GI FN  T DLY+ADA  G
Sbjct:    61 LKY-LPETGYVDFAQITESSNSSWCDGTIGTALAGRCGRPAGIAFNEKTGDLYVADAPLG 119

Query:   119 LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGD 178
             L V+ P GG A ++  S  G PF+F + LD+DP TG+VYFT  S  F   Q  +++   D
Sbjct:   120 LHVISPAGGLATKITDSVDGKPFKFLDGLDVDPTTGVVYFTSFSSRFSPIQVLIALGLKD 179

Query:   179 RSGRLLKYDPLKKNVTVMYNGLSFPNGVXXXXXXXXXXXXXXXTLKILRFWLQGERTTYT 238
              +G+L KYDP  K VTV+  GLS   G                   I R+W++G +   +
Sbjct:   180 ATGKLYKYDPSTKVVTVLMEGLSGSAGCAVSSDGSFVLVSQFTKSNIKRYWIKGPKAGSS 239

Query:   239 PQLFAEMPRFPDNIKS-DSKGEFWIA 263
                F      PDNIK   S G FW+A
Sbjct:   240 ED-FTNSVSNPDNIKRIGSTGNFWVA 264

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016844 "strictosidine synthase activity" evidence=IEA;TAS

GO:0005773 "vacuole" evidence=IDA

GO:0009611 "response to wounding" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0010167 "response to nitrate" evidence=RCA

GO:0010260 "organ senescence" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	4.3.3	0.766
3rd Layer	4.3.3.2	0.824

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh4_pg.C_LG_VIII000978	hypothetical protein (263 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	eugene3.00280038	hypothetical protein (145 aa)			•						0.503
	eugene3.85300001	hypothetical protein (161 aa)			•						0.461

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	343
pfam03088	89	pfam03088, Str_synth, Strictosidine synthase	7e-31
pfam08450	245	pfam08450, SGL, SMP-30/Gluconolaconase/LRE-like re	4e-13
COG3386	307	COG3386, COG3386, Gluconolactonase [Carbohydrate t	6e-13

>gnl|CDD|111929 pfam03088, Str_synth, Strictosidine synthase

 Score =  111 bits (280), Expect = 7e-31
 Identities = 42/89 (47%), Positives = 61/89 (68%)

Query: 145 NDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSFPN 204
           N LD+DP TG++YFTDSS  + RRQ   ++  GD++GRL+KYDP  K   V+   L FPN
Sbjct: 1   NALDVDPETGVLYFTDSSSRYDRRQVIFAMLEGDKTGRLMKYDPSTKVTKVLLKDLYFPN 60

Query: 205 GVALSNNNSFLLLAESATLKILRFWLQGE 233
           G+ALS + SF+L  E+   +I ++W++G 
Sbjct: 61  GIALSPDGSFVLFCETPMKRISKYWIKGP 89

Strictosidine synthase (E.C. 4.3.3.2) is a key enzyme in alkaloid biosynthesis. It catalyzes the condensation of tryptamine with secologanin to form strictosidine. Length = 89

>gnl|CDD|219847 pfam08450, SGL, SMP-30/Gluconolaconase/LRE-like region

 Score = 68.0 bits (167), Expect = 4e-13
 Identities = 47/169 (27%), Positives = 71/169 (42%), Gaps = 23/169 (13%)

Query: 110 LYIADAYFGLMVVGPNGGQAQQLASSAGGIPF-RFTNDLDIDPNTGIVYFTDSSIYFQRR 168
           L +A    GL ++  + G+   LA      P  RF ND  +DP+ G  +F          
Sbjct: 54  LIVALKR-GLALLDLDTGELTTLADLEPDEPLNRF-NDGKVDPD-GRFWFGTMG------ 104

Query: 169 QYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRF 228
                IA G   G L + DP  K V  + +G++  NG+A S +   L  A+S T +I  F
Sbjct: 105 ---FDIAPGGEPGALYRLDPDGK-VERVLDGITISNGLAWSPDGKTLYFADSPTRRIWAF 160

Query: 229 ------WLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNSARGKI 271
                  L   R  +    F +    PD +  D++G  W+A     GK+
Sbjct: 161 DYDADGGLISNRRVFAD--FKDGDGEPDGMAVDAEGNVWVARWGG-GKV 206

This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30), gluconolactonase and luciferin-regenerating enzyme (LRE). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 and LRE. Length = 245

>gnl|CDD|225921 COG3386, COG3386, Gluconolactonase [Carbohydrate transport and metabolism]

 Score = 68.2 bits (167), Expect = 6e-13
 Identities = 53/250 (21%), Positives = 89/250 (35%), Gaps = 63/250 (25%)

Query: 46  GEGP----------YVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLC 95
           GEGP          +V +  GRI +          F +                      
Sbjct: 27  GEGPVWDPDRGALLWVDILGGRIHRLDPETGKKRVFPSPG-------------------- 66

Query: 96  GRPLGIKFNP----VTCDLYIADAYFGLMVVGP-NGGQAQQLASSAGGIPFRFTNDLDID 150
           G   G   +     + C+        G+ ++ P  GG+   LA    G+P    ND  +D
Sbjct: 67  GFSSGALIDAGGRLIACE-------HGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVD 119

Query: 151 PNTGIVYFTDSSIYFQRRQYFMSIATGDRS-----GRLLKYDPLKKNVTVMYNGLSFPNG 205
           P+ G ++F D           M      +S     G L + DP    V ++ + L+ PNG
Sbjct: 120 PD-GRIWFGD-----------MGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNG 167

Query: 206 VALSNNNSFLLLAESATLKILRFWLQGER-TTYTPQLFAEMPRF---PDNIKSDSKGEFW 261
           +A S +   L +A++   +I R+ L          + F +       PD +  D+ G  W
Sbjct: 168 LAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLW 227

Query: 262 IAMNSARGKI 271
           +A     G++
Sbjct: 228 VAAVWGGGRV 237

Length = 307

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	343
KOG1520	376	consensus Predicted alkaloid synthase/Surface muci	100.0
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.96
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	99.94
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	99.92
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.83
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	99.82
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.67
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	99.66
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.61
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.59
PRK11028	330	6-phosphogluconolactonase; Provisional	99.56
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.54
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	99.45
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.43
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	99.43
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.41
PRK11028	330	6-phosphogluconolactonase; Provisional	99.35
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.32
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	99.22
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.21
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	99.15
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	99.14
COG3292	671	Predicted periplasmic ligand-binding sensor domain	99.14
KOG4659	1899	consensus Uncharacterized conserved protein (Rhs f	99.09
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	99.06
COG3391	381	Uncharacterized conserved protein [Function unknow	99.06
KOG1214	1289	consensus Nidogen and related basement membrane pr	98.98
COG3292	671	Predicted periplasmic ligand-binding sensor domain	98.92
COG3391	381	Uncharacterized conserved protein [Function unknow	98.91
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.88
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	98.88
PRK04792	448	tolB translocation protein TolB; Provisional	98.84
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	98.83
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	98.82
PRK02889	427	tolB translocation protein TolB; Provisional	98.79
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	98.79
PRK04922	433	tolB translocation protein TolB; Provisional	98.79
PRK05137	435	tolB translocation protein TolB; Provisional	98.79
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.76
KOG4659	1899	consensus Uncharacterized conserved protein (Rhs f	98.75
KOG1214	1289	consensus Nidogen and related basement membrane pr	98.75
PRK00178	430	tolB translocation protein TolB; Provisional	98.75
PRK03629	429	tolB translocation protein TolB; Provisional	98.73
PRK05137	435	tolB translocation protein TolB; Provisional	98.69
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	98.66
KOG0315	311	consensus G-protein beta subunit-like protein (con	98.63
PRK03629	429	tolB translocation protein TolB; Provisional	98.6
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.6
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	98.6
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.59
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.59
PRK04043	419	tolB translocation protein TolB; Provisional	98.57
PRK04792	448	tolB translocation protein TolB; Provisional	98.56
KOG0315	311	consensus G-protein beta subunit-like protein (con	98.56
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	98.56
PRK04922	433	tolB translocation protein TolB; Provisional	98.55
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.53
PRK02889	427	tolB translocation protein TolB; Provisional	98.51
PRK00178	430	tolB translocation protein TolB; Provisional	98.51
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	98.49
PRK01742	429	tolB translocation protein TolB; Provisional	98.48
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	98.47
COG2133	399	Glucose/sorbosone dehydrogenases [Carbohydrate tra	98.44
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.43
KOG0318	603	consensus WD40 repeat stress protein/actin interac	98.31
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	98.31
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	98.31
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.27
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.27
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	98.27
COG4946	668	Uncharacterized protein related to the periplasmic	98.22
KOG0266	456	consensus WD40 repeat-containing protein [General	98.21
PRK01029	428	tolB translocation protein TolB; Provisional	98.17
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	98.17
PRK04043	419	tolB translocation protein TolB; Provisional	98.16
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.14
KOG0279	315	consensus G protein beta subunit-like protein [Sig	98.14
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.14
PLN00181	793	protein SPA1-RELATED; Provisional	98.13
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.13
PTZ00421	493	coronin; Provisional	98.12
PRK01742	429	tolB translocation protein TolB; Provisional	98.11
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	98.1
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.09
KOG1520	376	consensus Predicted alkaloid synthase/Surface muci	98.09
KOG0279	315	consensus G protein beta subunit-like protein [Sig	98.08
KOG2055	514	consensus WD40 repeat protein [General function pr	98.08
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	98.06
KOG0266	456	consensus WD40 repeat-containing protein [General	98.06
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	98.04
KOG0318	603	consensus WD40 repeat stress protein/actin interac	98.01
KOG0263	707	consensus Transcription initiation factor TFIID, s	98.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	98.0
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	97.99
KOG0286	343	consensus G-protein beta subunit [General function	97.98
KOG0286	343	consensus G-protein beta subunit [General function	97.98
KOG2106	626	consensus Uncharacterized conserved protein, conta	97.95
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.94
COG4946	668	Uncharacterized protein related to the periplasmic	97.9
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.89
PHA02713	557	hypothetical protein; Provisional	97.88
PLN00181	793	protein SPA1-RELATED; Provisional	97.87
KOG0275	508	consensus Conserved WD40 repeat-containing protein	97.86
KOG1273	405	consensus WD40 repeat protein [General function pr	97.82
PRK13684	334	Ycf48-like protein; Provisional	97.81
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	97.81
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	97.81
KOG1539	910	consensus WD repeat protein [General function pred	97.79
KOG4328	498	consensus WD40 protein [Function unknown]	97.78
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	97.77
PTZ00420	568	coronin; Provisional	97.76
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	97.74
PRK01029	428	tolB translocation protein TolB; Provisional	97.72
KOG0296	399	consensus Angio-associated migratory cell protein	97.65
KOG0282	503	consensus mRNA splicing factor [Function unknown]	97.65
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.62
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	97.6
KOG2321	703	consensus WD40 repeat protein [General function pr	97.59
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.57
KOG2048	691	consensus WD40 repeat protein [General function pr	97.56
PRK02888	635	nitrous-oxide reductase; Validated	97.55
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.54
KOG0278	334	consensus Serine/threonine kinase receptor-associa	97.54
KOG1274	933	consensus WD40 repeat protein [General function pr	97.54
PTZ00421	493	coronin; Provisional	97.53
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	97.5
KOG2055	514	consensus WD40 repeat protein [General function pr	97.46
KOG2048	691	consensus WD40 repeat protein [General function pr	97.45
KOG0772	641	consensus Uncharacterized conserved protein, conta	97.42
KOG0289	506	consensus mRNA splicing factor [General function p	97.41
KOG0289	506	consensus mRNA splicing factor [General function p	97.38
KOG0293	519	consensus WD40 repeat-containing protein [Function	97.34
KOG0278	334	consensus Serine/threonine kinase receptor-associa	97.33
KOG0316	307	consensus Conserved WD40 repeat-containing protein	97.32
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	97.32
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	97.3
KOG0310	487	consensus Conserved WD40 repeat-containing protein	97.3
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	97.3
KOG0646	476	consensus WD40 repeat protein [General function pr	97.28
KOG2106	626	consensus Uncharacterized conserved protein, conta	97.27
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	97.27
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	97.26
KOG0772	641	consensus Uncharacterized conserved protein, conta	97.21
KOG0263	707	consensus Transcription initiation factor TFIID, s	97.2
PRK02888	635	nitrous-oxide reductase; Validated	97.2
KOG0640	430	consensus mRNA cleavage stimulating factor complex	97.18
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	97.17
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	97.16
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.16
PF05787	524	DUF839: Bacterial protein of unknown function (DUF	97.15
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	97.13
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	97.11
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.07
KOG0643	327	consensus Translation initiation factor 3, subunit	97.02
KOG0275	508	consensus Conserved WD40 repeat-containing protein	97.02
KOG0293	519	consensus WD40 repeat-containing protein [Function	97.01
PTZ00420	568	coronin; Provisional	96.99
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	96.99
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	96.97
KOG1539	910	consensus WD repeat protein [General function pred	96.96
KOG1407	313	consensus WD40 repeat protein [Function unknown]	96.95
KOG0294	362	consensus WD40 repeat-containing protein [Function	96.95
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.9
COG3211	616	PhoX Predicted phosphatase [General function predi	96.87
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	96.86
KOG1274	933	consensus WD40 repeat protein [General function pr	96.86
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	96.83
PF13449	326	Phytase-like: Esterase-like activity of phytase	96.83
KOG0283	712	consensus WD40 repeat-containing protein [Function	96.79
PHA03098	534	kelch-like protein; Provisional	96.78
PHA02790	480	Kelch-like protein; Provisional	96.74
KOG0639	705	consensus Transducin-like enhancer of split protei	96.67
PHA02713	557	hypothetical protein; Provisional	96.59
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.58
PF13449	326	Phytase-like: Esterase-like activity of phytase	96.57
PF05787	524	DUF839: Bacterial protein of unknown function (DUF	96.51
smart00135	43	LY Low-density lipoprotein-receptor YWTD domain. T	96.5
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	96.46
KOG0640	430	consensus mRNA cleavage stimulating factor complex	96.43
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	96.41
KOG0646	476	consensus WD40 repeat protein [General function pr	96.39
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	96.38
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	96.37
KOG0316	307	consensus Conserved WD40 repeat-containing protein	96.37
COG2133	399	Glucose/sorbosone dehydrogenases [Carbohydrate tra	96.35
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	96.35
PHA02790	480	Kelch-like protein; Provisional	96.34
KOG0308	735	consensus Conserved WD40 repeat-containing protein	96.28
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	96.28
KOG1273	405	consensus WD40 repeat protein [General function pr	96.23
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	96.23
KOG0643	327	consensus Translation initiation factor 3, subunit	96.22
PHA03098	534	kelch-like protein; Provisional	96.17
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	96.16
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	96.14
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	96.07
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	95.98
KOG0284	464	consensus Polyadenylation factor I complex, subuni	95.94
KOG0303	472	consensus Actin-binding protein Coronin, contains	95.91
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	95.91
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	95.86
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	95.79
KOG0310	487	consensus Conserved WD40 repeat-containing protein	95.78
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	95.75
KOG0288	459	consensus WD40 repeat protein TipD [General functi	95.75
KOG1407	313	consensus WD40 repeat protein [Function unknown]	95.73
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	95.66
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	95.6
KOG0301	745	consensus Phospholipase A2-activating protein (con	95.59
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	95.55
COG1520	370	FOG: WD40-like repeat [Function unknown]	95.53
KOG0639	705	consensus Transducin-like enhancer of split protei	95.5
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	95.48
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	95.45
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	95.38
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	95.27
KOG2139	445	consensus WD40 repeat protein [General function pr	95.27
PRK13684	334	Ycf48-like protein; Provisional	95.23
KOG0649	325	consensus WD40 repeat protein [General function pr	95.23
KOG2110	391	consensus Uncharacterized conserved protein, conta	95.22
PLN00033	398	photosystem II stability/assembly factor; Provisio	95.11
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	95.05
KOG0649	325	consensus WD40 repeat protein [General function pr	95.04
KOG0296	399	consensus Angio-associated migratory cell protein	95.02
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	95.0
KOG2139	445	consensus WD40 repeat protein [General function pr	94.96
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	94.87
KOG0645	312	consensus WD40 repeat protein [General function pr	94.86
KOG0288	459	consensus WD40 repeat protein TipD [General functi	94.84
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	94.64
KOG2321	703	consensus WD40 repeat protein [General function pr	94.57
COG3211	616	PhoX Predicted phosphatase [General function predi	94.53
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	94.48
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	94.48
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	94.33
KOG0973	942	consensus Histone transcription regulator HIRA, WD	94.21
KOG0641	350	consensus WD40 repeat protein [General function pr	94.21
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	94.13
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	94.09
PF07494	24	Reg_prop: Two component regulator propeller; Inter	94.08
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	94.08
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	94.03
KOG3881	412	consensus Uncharacterized conserved protein [Funct	93.96
PF00058	42	Ldl_recept_b: Low-density lipoprotein receptor rep	93.85
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	93.79
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	93.75
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	93.75
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	93.74
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	93.72
smart00284	255	OLF Olfactomedin-like domains.	93.67
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	93.66
KOG0771	398	consensus Prolactin regulatory element-binding pro	93.6
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	93.59
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	93.49
KOG0284	464	consensus Polyadenylation factor I complex, subuni	93.48
PF02191	250	OLF: Olfactomedin-like domain; InterPro: IPR003112	93.41
KOG0283	712	consensus WD40 repeat-containing protein [Function	93.36
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	93.24
KOG4227	609	consensus WD40 repeat protein [General function pr	93.16
PF00058	42	Ldl_recept_b: Low-density lipoprotein receptor rep	93.07
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	93.07
KOG1215	877	consensus Low-density lipoprotein receptors contai	92.8
PLN02153	341	epithiospecifier protein	92.76
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	92.6
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	92.49
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	92.28
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	92.23
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	92.23
PF07494	24	Reg_prop: Two component regulator propeller; Inter	92.22
COG4247	364	Phy 3-phytase (myo-inositol-hexaphosphate 3-phosph	92.17
KOG0973	942	consensus Histone transcription regulator HIRA, WD	92.04
PLN00033	398	photosystem II stability/assembly factor; Provisio	91.73
KOG2110	391	consensus Uncharacterized conserved protein, conta	91.7
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	91.43
COG1520	370	FOG: WD40-like repeat [Function unknown]	91.4
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	91.38
KOG0308	735	consensus Conserved WD40 repeat-containing protein	91.28
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	91.26
KOG0302	440	consensus Ribosome Assembly protein [General funct	91.25
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	91.21
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	91.17
KOG1215	877	consensus Low-density lipoprotein receptors contai	91.07
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	90.92
PF09910	339	DUF2139: Uncharacterized protein conserved in arch	90.64
COG5276	370	Uncharacterized conserved protein [Function unknow	90.61
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	90.58
PLN02153	341	epithiospecifier protein	90.45
KOG0269	839	consensus WD40 repeat-containing protein [Function	90.33
KOG1963	792	consensus WD40 repeat protein [General function pr	90.31
KOG2096	420	consensus WD40 repeat protein [General function pr	90.28
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	90.21
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	90.09
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	89.78
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	89.43
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	89.34
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	89.3
smart00135	43	LY Low-density lipoprotein-receptor YWTD domain. T	89.29
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	89.25
KOG0645	312	consensus WD40 repeat protein [General function pr	89.19
PF14517	229	Tachylectin: Tachylectin; PDB: 1TL2_A.	89.05
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	88.98
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	88.56
PLN02193	470	nitrile-specifier protein	88.5
PF14517	229	Tachylectin: Tachylectin; PDB: 1TL2_A.	88.44
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	88.41
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	88.31
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	88.07
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	87.62
KOG0294	362	consensus WD40 repeat-containing protein [Function	87.35
PF14339	236	DUF4394: Domain of unknown function (DUF4394)	87.02
KOG1963	792	consensus WD40 repeat protein [General function pr	86.99
COG4247	364	Phy 3-phytase (myo-inositol-hexaphosphate 3-phosph	86.84
PF06739	38	SBBP: Beta-propeller repeat; InterPro: IPR010620 T	86.57
KOG4227	609	consensus WD40 repeat protein [General function pr	86.11
KOG0302	440	consensus Ribosome Assembly protein [General funct	86.11
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	85.93
KOG0647	347	consensus mRNA export protein (contains WD40 repea	84.76
KOG4328	498	consensus WD40 protein [Function unknown]	84.67
KOG2096	420	consensus WD40 repeat protein [General function pr	83.38
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	83.19
KOG2111	346	consensus Uncharacterized conserved protein, conta	82.95
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	82.57
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	82.55
KOG2395	644	consensus Protein involved in vacuole import and d	82.5
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	81.46
KOG1188	376	consensus WD40 repeat protein [General function pr	81.4
PLN02193	470	nitrile-specifier protein	80.95
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	80.71
KOG0295	406	consensus WD40 repeat-containing protein [Function	80.28
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	80.16
KOG0269	839	consensus WD40 repeat-containing protein [Function	80.1
PRK13616	591	lipoprotein LpqB; Provisional	80.1

>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]

Probab=100.00  E-value=3.8e-34  Score=249.76  Aligned_cols=302  Identities=47%  Similarity=0.869  Sum_probs=258.8

Q ss_pred             CCCCCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEE
Q 019290           33 GVVGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYI  112 (343)
Q Consensus        33 ~~~~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v  112 (343)
                      .+..||.+.+|+.|.--|++..++++.+|..+...+..+...........|........++.+++|.||+++...|.|||
T Consensus        52 ~~~g~E~~~fd~~~~gp~~~v~dg~il~~~g~~~Gwv~~~~~~~s~~~~~~~~~~~~~~e~~CGRPLGl~f~~~ggdL~V  131 (376)
T KOG1520|consen   52 HLTGPESLLFDPQGGGPYTGVVDGRILKYTGNDDGWVKFADTKDSTNRSQCCDPGSFETEPLCGRPLGIRFDKKGGDLYV  131 (376)
T ss_pred             ccCChhhheecccCCCceEEEECCceEEEeccCceEEEEEeccccccccccCCCcceecccccCCcceEEeccCCCeEEE
Confidence            46679999999987767888899999999887666777766543344455555445666778999999999996679999


Q ss_pred             EeCCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCc
Q 019290          113 ADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKN  192 (343)
Q Consensus       113 ~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~  192 (343)
                      ||..-|++.+++++++.+.+....++.+..+.|++.+++ +|.+||+|++.+++++++.+.+.++.+.|++++||+.+++
T Consensus       132 aDAYlGL~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~-~g~vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~tK~  210 (376)
T KOG1520|consen  132 ADAYLGLLKVGPEGGLAELLADEAEGKPFKFLNDLDIDP-EGVVYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDPSTKV  210 (376)
T ss_pred             EecceeeEEECCCCCcceeccccccCeeeeecCceeEcC-CCeEEEeccccccchhheEEeeecCCCccceEEecCcccc
Confidence            999999999999999988888888888889999999999 5999999999999999999999999889999999999999


Q ss_pred             eEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeec-CCCCCCceeeCCCCCEEEEeccCCCcc
Q 019290          193 VTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAE-MPRFPDNIKSDSKGEFWIAMNSARGKI  271 (343)
Q Consensus       193 ~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~G~lwi~~~~~~~~~  271 (343)
                      .+++..++.++||+++++|+..+.++++...+|.+|.+.++.. ++.++|++ ++|+||+|..+++|.+||+.+.++.  
T Consensus       211 ~~VLld~L~F~NGlaLS~d~sfvl~~Et~~~ri~rywi~g~k~-gt~EvFa~~LPG~PDNIR~~~~G~fWVal~~~~~--  287 (376)
T KOG1520|consen  211 TKVLLDGLYFPNGLALSPDGSFVLVAETTTARIKRYWIKGPKA-GTSEVFAEGLPGYPDNIRRDSTGHFWVALHSKRS--  287 (376)
T ss_pred             hhhhhhcccccccccCCCCCCEEEEEeeccceeeeeEecCCcc-CchhhHhhcCCCCCcceeECCCCCEEEEEecccc--
Confidence            8899999999999999999999999999999999999998766 67788988 9999999999999999999876333  


Q ss_pred             ccccccccccccCCCcc---------------------cCCCeEEEECCCCCEEEEeeCCCCCccCCceeEEEeCCEEEE
Q 019290          272 ESNKKTAFCEETAKPWF---------------------LRDPVGVKFDVNGNVVDVLDGNEGNTLNSVSEVQEYGEYLYT  330 (343)
Q Consensus       272 ~~~~~~~~~~~~~~~~~---------------------~~~~~v~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i  330 (343)
                           ..|+.....||+                     .+...|.+.|.+|+.++++++.++.....++.+.+.+|+||+
T Consensus       288 -----~~~~~~~~~p~vr~~~~~~~~~~~~~~~~~~~~~p~~~V~~~d~~G~il~~lhD~~g~~~~~~sev~E~dg~Lyi  362 (376)
T KOG1520|consen  288 -----TLWRLLMKYPWVRKFIAKLPKYMELLYFLNNGGKPHSAVKLSDETGKILESLHDKEGKVITLVSEVGEHDGHLYI  362 (376)
T ss_pred             -----hHHHhhhcChHHHHHHHhhccchhhhhhhhccCCCceEEEEecCCCcEEEEEecCCCCceEEEEEEeecCCeEEE
Confidence                 356666666664                     122667677789999999998888777777788888999999


Q ss_pred             ecCCCCeEEEEcC
Q 019290          331 GSSVQPYVVVIKA  343 (343)
Q Consensus       331 ~~~~~~~i~~~~~  343 (343)
                      |+....+|.|++.
T Consensus       363 GS~~~p~i~~lkl  375 (376)
T KOG1520|consen  363 GSLFNPYIARLKL  375 (376)
T ss_pred             cccCcceeEEEec
Confidence            9999999999873

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.96  E-value=1.4e-27  Score=207.85  Aligned_cols=236  Identities=30%  Similarity=0.474  Sum_probs=180.4

Q ss_pred             CceEEEcC-CCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           37 PESLAFDC-NGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        37 p~~l~~d~-~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      ||++++++ +|.++|++..+++|+++++.++....+..                      ..|.|++++.+++.+|+++ 
T Consensus         2 ~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~----------------------~~~~G~~~~~~~g~l~v~~-   58 (246)
T PF08450_consen    2 GEGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDL----------------------PGPNGMAFDRPDGRLYVAD-   58 (246)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEES----------------------SSEEEEEEECTTSEEEEEE-
T ss_pred             CcceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEec----------------------CCCceEEEEccCCEEEEEE-
Confidence            78999998 78888899999999999999876655421                      1289999994389999996 


Q ss_pred             CCeEEEEeCCCCeEEEcccccCCC-CccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceE
Q 019290          116 YFGLMVVGPNGGQAQQLASSAGGI-PFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVT  194 (343)
Q Consensus       116 ~~gi~~~d~~~~~~~~~~~~~~~~-~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~  194 (343)
                      ..++.++|+++++++.+.....+. +...+|++++|+ +|++|++++......         ....++|++++++ ++..
T Consensus        59 ~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~---------~~~~g~v~~~~~~-~~~~  127 (246)
T PF08450_consen   59 SGGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGAS---------GIDPGSVYRIDPD-GKVT  127 (246)
T ss_dssp             TTCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTT---------CGGSEEEEEEETT-SEEE
T ss_pred             cCceEEEecCCCcEEEEeeccCCCcccCCCceEEEcC-CCCEEEEecCCCccc---------cccccceEEECCC-CeEE
Confidence            567788899999998876654333 678899999999 599999987531100         0001789999998 7888


Q ss_pred             EeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccc-cccceeeecC---CCCCCceeeCCCCCEEEEeccCCCc
Q 019290          195 VMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERT-TYTPQLFAEM---PRFPDNIKSDSKGEFWIAMNSARGK  270 (343)
Q Consensus       195 ~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~-~~~~~~~~~~---~~~p~~i~~d~~G~lwi~~~~~~~~  270 (343)
                      .+..++..||||++++|++.||++++..++|++|+++.+.. +...+.+...   .+.|+|+++|++|+||++.+.    
T Consensus       128 ~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~----  203 (246)
T PF08450_consen  128 VVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWG----  203 (246)
T ss_dssp             EEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEET----
T ss_pred             EEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcC----
Confidence            77888899999999999999999999999999999975322 2444555442   235999999999999999887    


Q ss_pred             cccccccccccccCCCcccCCCeEEEECCCCCEEEEeeCCCCCccCCceeEEE---eCCEEEEecCC
Q 019290          271 IESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEGNTLNSVSEVQE---YGEYLYTGSSV  334 (343)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~~~~~~~~~~~~~---~~g~l~i~~~~  334 (343)
                                          .+.|+++|++|+.+..+..|..    .++.+..   +.++|||++++
T Consensus       204 --------------------~~~I~~~~p~G~~~~~i~~p~~----~~t~~~fgg~~~~~L~vTta~  246 (246)
T PF08450_consen  204 --------------------GGRIVVFDPDGKLLREIELPVP----RPTNCAFGGPDGKTLYVTTAR  246 (246)
T ss_dssp             --------------------TTEEEEEETTSCEEEEEE-SSS----SEEEEEEESTTSSEEEEEEB-
T ss_pred             --------------------CCEEEEECCCccEEEEEcCCCC----CEEEEEEECCCCCEEEEEeCC
Confidence                                4699999999999999887732    3444443   46889999863

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=99.94  E-value=8.1e-24  Score=186.67  Aligned_cols=251  Identities=22%  Similarity=0.331  Sum_probs=180.8

Q ss_pred             CCCCCceEEEcCCCC-eeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEE
Q 019290           33 GVVGPESLAFDCNGE-GPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLY  111 (343)
Q Consensus        33 ~~~~p~~l~~d~~g~-~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~  111 (343)
                      +..-.|+.+++++.. ++|++..+++|+++++.+++...+..                    ....+.++.++. ++.|+
T Consensus        23 ~~~~gEgP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~--------------------p~~~~~~~~~d~-~g~Lv   81 (307)
T COG3386          23 GATLGEGPVWDPDRGALLWVDILGGRIHRLDPETGKKRVFPS--------------------PGGFSSGALIDA-GGRLI   81 (307)
T ss_pred             ccccccCccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEEC--------------------CCCcccceeecC-CCeEE
Confidence            444688989998866 77899999999999998877666642                    222356677776 67777


Q ss_pred             EEeCCCeEEEEeCCCCeE-EEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCC
Q 019290          112 IADAYFGLMVVGPNGGQA-QQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLK  190 (343)
Q Consensus       112 v~~~~~gi~~~d~~~~~~-~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~  190 (343)
                      .+  ..|+++++++++.. +.+.....+.+.+.+|++.+++ +|++||+++++ +.     ....+....+.|||+|+.+
T Consensus        82 ~~--~~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~p-dG~~wfgt~~~-~~-----~~~~~~~~~G~lyr~~p~g  152 (307)
T COG3386          82 AC--EHGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDP-DGRIWFGDMGY-FD-----LGKSEERPTGSLYRVDPDG  152 (307)
T ss_pred             EE--ccccEEEeccCCceeEEeccccCCCCcCCCCceeEcC-CCCEEEeCCCc-cc-----cCccccCCcceEEEEcCCC
Confidence            76  46788888776666 6666665666778999999999 69999999873 10     0111223356899999864


Q ss_pred             CceEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC-ccccccce--eeec-CCCCCCceeeCCCCCEEEEecc
Q 019290          191 KNVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQG-ERTTYTPQ--LFAE-MPRFPDNIKSDSKGEFWIAMNS  266 (343)
Q Consensus       191 ~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~-~~~~~~~~--~~~~-~~~~p~~i~~d~~G~lwi~~~~  266 (343)
                      +..+.+..++..+||+|++||++.+|++++..++|++++++. ........  .+.. .++.|||+++|++|++|++...
T Consensus       153 ~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~  232 (307)
T COG3386         153 GVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVW  232 (307)
T ss_pred             CEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEeccc
Confidence            444444444899999999999999999999999999999872 11112222  2222 4689999999999999975443


Q ss_pred             CCCccccccccccccccCCCcccCCCeEEEECCCCCEEEEeeCCCCCccCCceeEEEeCCEEEEecCCCCe
Q 019290          267 ARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEGNTLNSVSEVQEYGEYLYTGSSVQPY  337 (343)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~~~~  337 (343)
                      .                       .+.|.+|+|+|++...+..|.. ....++..-++.++|||++..++.
T Consensus       233 ~-----------------------g~~v~~~~pdG~l~~~i~lP~~-~~t~~~FgG~~~~~L~iTs~~~~~  279 (307)
T COG3386         233 G-----------------------GGRVVRFNPDGKLLGEIKLPVK-RPTNPAFGGPDLNTLYITSARSGM  279 (307)
T ss_pred             C-----------------------CceEEEECCCCcEEEEEECCCC-CCccceEeCCCcCEEEEEecCCCC
Confidence            1                       2388999999999999988743 122222223336899999998854

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=99.92  E-value=6.9e-23  Score=170.28  Aligned_cols=251  Identities=16%  Similarity=0.137  Sum_probs=195.0

Q ss_pred             ccccccccCCCCCCCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEE
Q 019290           23 SKSYQQLQLPGVVGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIK  102 (343)
Q Consensus        23 ~~~~~~~~~~~~~~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~  102 (343)
                      .....++++|....|..++.++||.+||.+...+.|-++||.+++...+..                   .....|++|.
T Consensus        50 ~~s~~~fpvp~G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypL-------------------g~Ga~Phgiv  110 (353)
T COG4257          50 DGSSAEFPVPNGSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPL-------------------GSGASPHGIV  110 (353)
T ss_pred             CCccceeccCCCCCccccccCCCCceEEecCccccceecCCCCCceEEEec-------------------CCCCCCceEE
Confidence            446678888877799999999999978888888999999999999888853                   3455799999


Q ss_pred             EeCCCCeEEEEeCCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCce
Q 019290          103 FNPVTCDLYIADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGR  182 (343)
Q Consensus       103 ~~~~~~~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~  182 (343)
                      +.+ ++..||+++..+|.++|+++..++++.-.. ......++...+|+ +|+|||+.+...               .| 
T Consensus       111 ~gp-dg~~Witd~~~aI~R~dpkt~evt~f~lp~-~~a~~nlet~vfD~-~G~lWFt~q~G~---------------yG-  171 (353)
T COG4257         111 VGP-DGSAWITDTGLAIGRLDPKTLEVTRFPLPL-EHADANLETAVFDP-WGNLWFTGQIGA---------------YG-  171 (353)
T ss_pred             ECC-CCCeeEecCcceeEEecCcccceEEeeccc-ccCCCcccceeeCC-CccEEEeecccc---------------ce-
Confidence            999 999999998789999999999998874332 22335678999999 599999876421               22 


Q ss_pred             EEEEeCCCCceEEeec-CCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeec---CCCCCCceeeCCCC
Q 019290          183 LLKYDPLKKNVTVMYN-GLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAE---MPRFPDNIKSDSKG  258 (343)
Q Consensus       183 v~~~d~~~~~~~~~~~-~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~~p~~i~~d~~G  258 (343)
                        |+|+.++.++++.. ....++|||..+||+ +|+++-..+-|-++|....    ..+.+..   +..-...+..|+.|
T Consensus       172 --rLdPa~~~i~vfpaPqG~gpyGi~atpdGs-vwyaslagnaiaridp~~~----~aev~p~P~~~~~gsRriwsdpig  244 (353)
T COG4257         172 --RLDPARNVISVFPAPQGGGPYGICATPDGS-VWYASLAGNAIARIDPFAG----HAEVVPQPNALKAGSRRIWSDPIG  244 (353)
T ss_pred             --ecCcccCceeeeccCCCCCCcceEECCCCc-EEEEeccccceEEcccccC----CcceecCCCcccccccccccCccC
Confidence              78888777776643 345699999999998 6777778889999886642    2223221   11124457789999


Q ss_pred             CEEEEeccCCCccccccccccccccCCCcccCCCeEEEECCCCCEEEEeeCCCCCccCCceeEEEeCCEEEEecCCCCeE
Q 019290          259 EFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEGNTLNSVSEVQEYGEYLYTGSSVQPYV  338 (343)
Q Consensus       259 ~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~~~~i  338 (343)
                      ++|++++.                        .+.+.+|||..+.-..+..|.. ....-+..+.+.+++|+..+..+.|
T Consensus       245 ~~wittwg------------------------~g~l~rfdPs~~sW~eypLPgs-~arpys~rVD~~grVW~sea~agai  299 (353)
T COG4257         245 RAWITTWG------------------------TGSLHRFDPSVTSWIEYPLPGS-KARPYSMRVDRHGRVWLSEADAGAI  299 (353)
T ss_pred             cEEEeccC------------------------CceeeEeCcccccceeeeCCCC-CCCcceeeeccCCcEEeeccccCce
Confidence            99999998                        5689999998777777777654 3444455566699999999999999


Q ss_pred             EEEcC
Q 019290          339 VVIKA  343 (343)
Q Consensus       339 ~~~~~  343 (343)
                      .|+|+
T Consensus       300 ~rfdp  304 (353)
T COG4257         300 GRFDP  304 (353)
T ss_pred             eecCc
Confidence            99986

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.83  E-value=2.4e-17  Score=168.32  Aligned_cols=263  Identities=18%  Similarity=0.223  Sum_probs=177.7

Q ss_pred             CCCCceEEEcCC-CCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEE
Q 019290           34 VVGPESLAFDCN-GEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYI  112 (343)
Q Consensus        34 ~~~p~~l~~d~~-g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v  112 (343)
                      +..|.++++|+. |+++++++.+++|.++|..+.....+.... .  ....+|   ......+..|.|++++++++.|||
T Consensus       567 l~~P~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g-~--~G~~dG---~~~~a~f~~P~GIavd~~gn~LYV  640 (1057)
T PLN02919        567 LKFPGKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTG-E--EGLRDG---SFEDATFNRPQGLAYNAKKNLLYV  640 (1057)
T ss_pred             CCCCceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCC-C--cCCCCC---chhccccCCCcEEEEeCCCCEEEE
Confidence            457889999986 665557788999999998764333332100 0  011111   111235667999999985667999


Q ss_pred             EeCCCe-EEEEeCCCCeEEEccccc------C------CCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCC
Q 019290          113 ADAYFG-LMVVGPNGGQAQQLASSA------G------GIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDR  179 (343)
Q Consensus       113 ~~~~~g-i~~~d~~~~~~~~~~~~~------~------~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~  179 (343)
                      +|+.++ |.++|+.++.++.+....      .      ...++.|.++++++.++.+|+++..                 
T Consensus       641 aDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~-----------------  703 (1057)
T PLN02919        641 ADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG-----------------  703 (1057)
T ss_pred             EeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC-----------------
Confidence            997755 899999988887664310      0      1125678999999855899999875                 


Q ss_pred             CceEEEEeCCCCceEEeec---------------CCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCcccc--c-----
Q 019290          180 SGRLLKYDPLKKNVTVMYN---------------GLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTT--Y-----  237 (343)
Q Consensus       180 ~~~v~~~d~~~~~~~~~~~---------------~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~--~-----  237 (343)
                      .+.|+++|..++....+..               .+..|.+++++++++.||+++..+++|.+|++++....  .     
T Consensus       704 ~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~  783 (1057)
T PLN02919        704 QHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPT  783 (1057)
T ss_pred             CCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccc
Confidence            5678888877665543321               24568999999999999999999999999998752210  0     


Q ss_pred             ---cceeeec--------CCCCCCceeeCCCCCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECCCCCEEEE
Q 019290          238 ---TPQLFAE--------MPRFPDNIKSDSKGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDV  306 (343)
Q Consensus       238 ---~~~~~~~--------~~~~p~~i~~d~~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~  306 (343)
                         ....+..        .-..|.++++|++|++||++..                        .+.|.++|+++..+..
T Consensus       784 ~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~------------------------N~rIrviD~~tg~v~t  839 (1057)
T PLN02919        784 FSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSY------------------------NHKIKKLDPATKRVTT  839 (1057)
T ss_pred             cCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECC------------------------CCEEEEEECCCCeEEE
Confidence               0000000        0125889999999999999987                        5688999987655443


Q ss_pred             eeCC------CC----CccCCceeEEEe-CCEEEEecCCCCeEEEEcC
Q 019290          307 LDGN------EG----NTLNSVSEVQEY-GEYLYTGSSVQPYVVVIKA  343 (343)
Q Consensus       307 ~~~~------~~----~~~~~~~~~~~~-~g~l~i~~~~~~~i~~~~~  343 (343)
                      +...      ++    .....+..+..+ +|+|||+....++|.+++.
T Consensus       840 iaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~  887 (1057)
T PLN02919        840 LAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDL  887 (1057)
T ss_pred             EeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEEC
Confidence            3211      01    123345555544 8899999999999999863

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=99.82  E-value=1.1e-17  Score=139.49  Aligned_cols=247  Identities=13%  Similarity=0.131  Sum_probs=180.7

Q ss_pred             cccccccCCCCCCCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEE
Q 019290           24 KSYQQLQLPGVVGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKF  103 (343)
Q Consensus        24 ~~~~~~~~~~~~~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~  103 (343)
                      -..++++++...+|++|..++||..|++++.. .|.|+|+++.++++|......                ...+-+...|
T Consensus        93 Gev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~lp~~~----------------a~~nlet~vf  155 (353)
T COG4257          93 GEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPLPLEH----------------ADANLETAVF  155 (353)
T ss_pred             CceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeeccccc----------------CCCcccceee
Confidence            34678889977899999999999944454444 899999999999999653322                2223456778


Q ss_pred             eCCCCeEEEEeCCCeEE-EEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCce
Q 019290          104 NPVTCDLYIADAYFGLM-VVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGR  182 (343)
Q Consensus       104 ~~~~~~l~v~~~~~gi~-~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~  182 (343)
                      |+ .|+|||. ...|.+ ++|+..+.++.+. ...+   ..+++|++.+ ||.+|++...                 .+-
T Consensus       156 D~-~G~lWFt-~q~G~yGrLdPa~~~i~vfp-aPqG---~gpyGi~atp-dGsvwyasla-----------------gna  211 (353)
T COG4257         156 DP-WGNLWFT-GQIGAYGRLDPARNVISVFP-APQG---GGPYGICATP-DGSVWYASLA-----------------GNA  211 (353)
T ss_pred             CC-CccEEEe-eccccceecCcccCceeeec-cCCC---CCCcceEECC-CCcEEEEecc-----------------ccc
Confidence            98 9999998 467744 8999877776653 2233   4689999999 6999997654                 456


Q ss_pred             EEEEeCCCCceEEeecCC---CCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeee--cCCCCCCceeeCCC
Q 019290          183 LLKYDPLKKNVTVMYNGL---SFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFA--EMPRFPDNIKSDSK  257 (343)
Q Consensus       183 v~~~d~~~~~~~~~~~~~---~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~p~~i~~d~~  257 (343)
                      |.++|+.++..+++...-   .....+..++.+ .+++++..++++++|+...    .....+.  .....|+.|.+|..
T Consensus       212 iaridp~~~~aev~p~P~~~~~gsRriwsdpig-~~wittwg~g~l~rfdPs~----~sW~eypLPgs~arpys~rVD~~  286 (353)
T COG4257         212 IARIDPFAGHAEVVPQPNALKAGSRRIWSDPIG-RAWITTWGTGSLHRFDPSV----TSWIEYPLPGSKARPYSMRVDRH  286 (353)
T ss_pred             eEEcccccCCcceecCCCcccccccccccCccC-cEEEeccCCceeeEeCccc----ccceeeeCCCCCCCcceeeeccC
Confidence            899999877655543221   223445556655 4889999999999999764    2222222  13346889999999


Q ss_pred             CCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECCCCCEEEEeeCCCCCccCCceeEEEeCCEEEEecCCCCe
Q 019290          258 GEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEGNTLNSVSEVQEYGEYLYTGSSVQPY  337 (343)
Q Consensus       258 G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~~~~  337 (343)
                      |++|..+..                        .+.|.+||+....+.++..+..+  .....+....|++|++....+.
T Consensus       287 grVW~sea~------------------------agai~rfdpeta~ftv~p~pr~n--~gn~ql~gr~ge~W~~e~gvd~  340 (353)
T COG4257         287 GRVWLSEAD------------------------AGAIGRFDPETARFTVLPIPRPN--SGNIQLDGRPGELWFTEAGVDA  340 (353)
T ss_pred             CcEEeeccc------------------------cCceeecCcccceEEEecCCCCC--CCceeccCCCCceeecccCcce
Confidence            999999887                        45888999999999999876542  2233444458999999999999


Q ss_pred             EEEEc
Q 019290          338 VVVIK  342 (343)
Q Consensus       338 i~~~~  342 (343)
                      +++++
T Consensus       341 lv~~r  345 (353)
T COG4257         341 LVTTR  345 (353)
T ss_pred             eEEEE
Confidence            99875

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.67  E-value=5.2e-14  Score=144.16  Aligned_cols=208  Identities=17%  Similarity=0.249  Sum_probs=141.0

Q ss_pred             CCCCceEEEcCCCCeeE-EEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEE
Q 019290           34 VVGPESLAFDCNGEGPY-VGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYI  112 (343)
Q Consensus        34 ~~~p~~l~~d~~g~~l~-~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v  112 (343)
                      +..|.+|+++++++.+| +++.+++|.++|..++....+....... ....++.  .........|.+++++++++.+||
T Consensus       623 f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g-~~~~gg~--~~~~~~ln~P~gVa~dp~~g~LyV  699 (1057)
T PLN02919        623 FNRPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKG-SDYQGGK--KGTSQVLNSPWDVCFEPVNEKVYI  699 (1057)
T ss_pred             cCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCccc-CCCCCCh--hhhHhhcCCCeEEEEecCCCeEEE
Confidence            45799999999988666 5677889999999887776664321100 0000000  000112457899999987789999


Q ss_pred             EeCCCe-EEEEeCCCCeEEEccccc----------CCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCc
Q 019290          113 ADAYFG-LMVVGPNGGQAQQLASSA----------GGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSG  181 (343)
Q Consensus       113 ~~~~~g-i~~~d~~~~~~~~~~~~~----------~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~  181 (343)
                      ++..++ |+++|..++.+..+....          ....+..|++++++++++.||+++..                 .+
T Consensus       700 ad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~-----------------n~  762 (1057)
T PLN02919        700 AMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE-----------------SS  762 (1057)
T ss_pred             EECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC-----------------CC
Confidence            987654 999999888765443110          01124678999999942349999875                 56


Q ss_pred             eEEEEeCCCCceEEee----------------------cCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccc
Q 019290          182 RLLKYDPLKKNVTVMY----------------------NGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTP  239 (343)
Q Consensus       182 ~v~~~d~~~~~~~~~~----------------------~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~  239 (343)
                      +|.++|++++....+.                      ..+..|.+++++++|. +||++..+++|.+|+.++..    .
T Consensus       763 ~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVADs~N~rIrviD~~tg~----v  837 (1057)
T PLN02919        763 SIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVADSYNHKIKKLDPATKR----V  837 (1057)
T ss_pred             eEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEEECCCCEEEEEECCCCe----E
Confidence            7888887765543221                      0134688999999886 89999999999999987532    1


Q ss_pred             eeeec--------------CCCCCCceeeCCCCCEEEEecc
Q 019290          240 QLFAE--------------MPRFPDNIKSDSKGEFWIAMNS  266 (343)
Q Consensus       240 ~~~~~--------------~~~~p~~i~~d~~G~lwi~~~~  266 (343)
                      ..+..              .-..|.++++|++|++||++..
T Consensus       838 ~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~  878 (1057)
T PLN02919        838 TTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTN  878 (1057)
T ss_pred             EEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECC
Confidence            11111              0125889999999999999876

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.66  E-value=5.2e-14  Score=115.10  Aligned_cols=237  Identities=13%  Similarity=0.133  Sum_probs=152.5

Q ss_pred             ceEEEcCC-CCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCC-CeEEEEeC
Q 019290           38 ESLAFDCN-GEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVT-CDLYIADA  115 (343)
Q Consensus        38 ~~l~~d~~-g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~-~~l~v~~~  115 (343)
                      |+..++.+ +.++|++...+.+.|||..+..........                  ..  ..|..+--++ -..+.+..
T Consensus        18 Egp~w~~~~~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~------------------p~--~ag~ilpv~~~~q~~~v~~   77 (310)
T KOG4499|consen   18 EGPHWDVERQSLLYVDIEAGEVHRYDIEQNKVYRAKIEG------------------PP--SAGFILPVEGGPQEFAVGC   77 (310)
T ss_pred             CCCceEEecceEEEEEeccCceehhhhhhhheEEEEEec------------------Cc--ceeEEEEecCCCceEEEee
Confidence            67777764 778899999999999998776655443221                  00  1233332211 23444434


Q ss_pred             CCe--EEEEeCCCCeEEEc---ccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCC-CceEEEEeCC
Q 019290          116 YFG--LMVVGPNGGQAQQL---ASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDR-SGRLLKYDPL  189 (343)
Q Consensus       116 ~~g--i~~~d~~~~~~~~~---~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~-~~~v~~~d~~  189 (343)
                      +..  +..+|.-......+   .........+..|+-.+|| +|+.|.+++...      .. .  ... .+.++++- .
T Consensus        78 G~kf~i~nwd~~~~~a~v~~t~~ev~~d~kknR~NDgkvdP-~Gryy~GtMad~------~~-~--le~~~g~Ly~~~-~  146 (310)
T KOG4499|consen   78 GSKFVIVNWDGVSESAKVYRTLFEVQPDRKKNRLNDGKVDP-DGRYYGGTMADF------GD-D--LEPIGGELYSWL-A  146 (310)
T ss_pred             cceEEEEEcccccceeeeeeeccccCchHHhcccccCccCC-CCceeeeeeccc------cc-c--ccccccEEEEec-c
Confidence            444  44444222222222   1122223346789999999 599999887531      01 0  112 34455554 5


Q ss_pred             CCceEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEE--ccCccccccceeeec-------CCCCCCceeeCCCCCE
Q 019290          190 KKNVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFW--LQGERTTYTPQLFAE-------MPRFPDNIKSDSKGEF  260 (343)
Q Consensus       190 ~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~--~~~~~~~~~~~~~~~-------~~~~p~~i~~d~~G~l  260 (343)
                      +++++.+......+|+++++.|.+..|+.++.+..|-.|+  ..+... .+.+.+.+       .+..|+|+++|.+|+|
T Consensus       147 ~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~-snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L  225 (310)
T KOG4499|consen  147 GHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDL-SNRKVIFDLRKSQPFESLEPDGMTIDTEGNL  225 (310)
T ss_pred             CCCceeeehhccCCccccccccCcEEEEEccCceEEeeeecCCCcccc-cCcceeEEeccCCCcCCCCCCcceEccCCcE
Confidence            5888888888889999999999999999999999995555  444333 33333322       2247999999999999


Q ss_pred             EEEeccCCCccccccccccccccCCCcccCCCeEEEECC-CCCEEEEeeCCCCCccCCceeEEEe-C--CEEEEecCC
Q 019290          261 WIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDV-NGNVVDVLDGNEGNTLNSVSEVQEY-G--EYLYTGSSV  334 (343)
Q Consensus       261 wi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~~-~--g~l~i~~~~  334 (343)
                      ||++++                        .+.|+++|| +|+.+..+-.|.    ..+++++.- +  ..+|+++..
T Consensus       226 ~Va~~n------------------------g~~V~~~dp~tGK~L~eiklPt----~qitsccFgGkn~d~~yvT~aa  275 (310)
T KOG4499|consen  226 YVATFN------------------------GGTVQKVDPTTGKILLEIKLPT----PQITSCCFGGKNLDILYVTTAA  275 (310)
T ss_pred             EEEEec------------------------CcEEEEECCCCCcEEEEEEcCC----CceEEEEecCCCccEEEEEehh
Confidence            999999                        569999999 699888877663    345555543 2  457777654

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.61  E-value=1.2e-12  Score=119.49  Aligned_cols=252  Identities=19%  Similarity=0.225  Sum_probs=156.9

Q ss_pred             CCCCCceEEEcCCCCeeEEEec----CCEEEEEEc--CCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCC
Q 019290           33 GVVGPESLAFDCNGEGPYVGVS----DGRILKWKA--ANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPV  106 (343)
Q Consensus        33 ~~~~p~~l~~d~~g~~l~~~~~----~g~i~~~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~  106 (343)
                      ...+|..|+++++++.+|+...    .++|..|..  +++++..+....                 .....|..++++++
T Consensus        35 ~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~-----------------~~g~~p~~i~~~~~   97 (345)
T PF10282_consen   35 EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVP-----------------SGGSSPCHIAVDPD   97 (345)
T ss_dssp             ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEE-----------------ESSSCEEEEEECTT
T ss_pred             CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeec-----------------cCCCCcEEEEEecC
Confidence            4458999999999999997755    467766654  445666553211                 13346889999997


Q ss_pred             CCeEEEEeCCCe-EEEEeCCC-CeEEEcccc---------cCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeee
Q 019290          107 TCDLYIADAYFG-LMVVGPNG-GQAQQLASS---------AGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIA  175 (343)
Q Consensus       107 ~~~l~v~~~~~g-i~~~d~~~-~~~~~~~~~---------~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~  175 (343)
                      ++.||+++...| +..++++. |........         ...+...+++.+.++|....+|+++.+             
T Consensus        98 g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG-------------  164 (345)
T PF10282_consen   98 GRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG-------------  164 (345)
T ss_dssp             SSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT-------------
T ss_pred             CCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC-------------
Confidence            778999976555 66666543 554433111         112334678999999943458888876             


Q ss_pred             ecCCCceEEEEeCC--CCceEE----eecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC-ccccccceeeecCC--
Q 019290          176 TGDRSGRLLKYDPL--KKNVTV----MYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQG-ERTTYTPQLFAEMP--  246 (343)
Q Consensus       176 ~~~~~~~v~~~d~~--~~~~~~----~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~--  246 (343)
                          ..+|+.|+.+  ++++..    -......|..++|+++++.+|+++...+.|.+|+++. ...+.....+...+  
T Consensus       165 ----~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~  240 (345)
T PF10282_consen  165 ----ADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEG  240 (345)
T ss_dssp             ----TTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETT
T ss_pred             ----CCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecccc
Confidence                4566666554  333432    1345677999999999999999999999999999882 22212222222111  


Q ss_pred             ----CCCCceeeCCCCCE-EEEeccCCCccccccccccccccCCCcccCCCeEEEECCC-CCEEEEeeCCCCCccCCcee
Q 019290          247 ----RFPDNIKSDSKGEF-WIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVN-GNVVDVLDGNEGNTLNSVSE  320 (343)
Q Consensus       247 ----~~p~~i~~d~~G~l-wi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~~~~  320 (343)
                          ..+.++++++||+. |++... .+.+                     .++.+|+. |++...-..+.+  -..+..
T Consensus       241 ~~~~~~~~~i~ispdg~~lyvsnr~-~~sI---------------------~vf~~d~~~g~l~~~~~~~~~--G~~Pr~  296 (345)
T PF10282_consen  241 FTGENAPAEIAISPDGRFLYVSNRG-SNSI---------------------SVFDLDPATGTLTLVQTVPTG--GKFPRH  296 (345)
T ss_dssp             SCSSSSEEEEEE-TTSSEEEEEECT-TTEE---------------------EEEEECTTTTTEEEEEEEEES--SSSEEE
T ss_pred             ccccCCceeEEEecCCCEEEEEecc-CCEE---------------------EEEEEecCCCceEEEEEEeCC--CCCccE
Confidence                13566899999975 555544 5433                     66677654 555433222222  123444


Q ss_pred             EEE--eCCEEEEecCCCCeEEEEc
Q 019290          321 VQE--YGEYLYTGSSVQPYVVVIK  342 (343)
Q Consensus       321 ~~~--~~g~l~i~~~~~~~i~~~~  342 (343)
                      +..  ++..||+++..++.|.+|+
T Consensus       297 ~~~s~~g~~l~Va~~~s~~v~vf~  320 (345)
T PF10282_consen  297 FAFSPDGRYLYVANQDSNTVSVFD  320 (345)
T ss_dssp             EEE-TTSSEEEEEETTTTEEEEEE
T ss_pred             EEEeCCCCEEEEEecCCCeEEEEE
Confidence            444  4788999999999999875

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.59  E-value=1.9e-13  Score=118.92  Aligned_cols=188  Identities=23%  Similarity=0.321  Sum_probs=130.0

Q ss_pred             eeeEEEeCCCCeEEEEeCCCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEe-CCCCeEEEEeCCcccccccceeeee
Q 019290           98 PLGIKFNPVTCDLYIADAYFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDID-PNTGIVYFTDSSIYFQRRQYFMSIA  175 (343)
Q Consensus        98 p~gi~~~~~~~~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d-~~dg~l~v~~~~~~~~~~~~~~~~~  175 (343)
                      +.|++++++++.||++|...+ |+++++++++.+.+..       ..+++++++ + +|++|+++..             
T Consensus         2 ~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~-------~~~~G~~~~~~-~g~l~v~~~~-------------   60 (246)
T PF08450_consen    2 GEGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDL-------PGPNGMAFDRP-DGRLYVADSG-------------   60 (246)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEES-------SSEEEEEEECT-TSEEEEEETT-------------
T ss_pred             CcceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEec-------CCCceEEEEcc-CCEEEEEEcC-------------
Confidence            457888877899999987554 9999999887765321       227899999 6 6999998754             


Q ss_pred             ecCCCceEEEEeCCCCceEEeec------CCCCcceeEEecCCCEEEEEEcCC--------CeEEEEEccCcccccccee
Q 019290          176 TGDRSGRLLKYDPLKKNVTVMYN------GLSFPNGVALSNNNSFLLLAESAT--------LKILRFWLQGERTTYTPQL  241 (343)
Q Consensus       176 ~~~~~~~v~~~d~~~~~~~~~~~------~~~~~~~i~~~~d~~~lyv~~~~~--------~~i~~~~~~~~~~~~~~~~  241 (343)
                            ++..+|+++++++.+..      .+..+|+++++++|+ +|++++..        ++|++++.++    . ...
T Consensus        61 ------~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~~----~-~~~  128 (246)
T PF08450_consen   61 ------GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPDG----K-VTV  128 (246)
T ss_dssp             ------CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETTS----E-EEE
T ss_pred             ------ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCCC----e-EEE
Confidence                  45666988888776543      345689999999987 99998764        6799998763    1 222


Q ss_pred             eecCCCCCCceeeCCCCC-EEEEeccCCCccccccccccccccCCCcccCCCeEEEECC--CCC-E--EEEeeCCCCCcc
Q 019290          242 FAEMPRFPDNIKSDSKGE-FWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDV--NGN-V--VDVLDGNEGNTL  315 (343)
Q Consensus       242 ~~~~~~~p~~i~~d~~G~-lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~--~g~-~--~~~~~~~~~~~~  315 (343)
                      ....-..|+||+++++|+ ||+++..                        .+.|++++.  ++. .  ...+...... .
T Consensus       129 ~~~~~~~pNGi~~s~dg~~lyv~ds~------------------------~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~  183 (246)
T PF08450_consen  129 VADGLGFPNGIAFSPDGKTLYVADSF------------------------NGRIWRFDLDADGGELSNRRVFIDFPGG-P  183 (246)
T ss_dssp             EEEEESSEEEEEEETTSSEEEEEETT------------------------TTEEEEEEEETTTCCEEEEEEEEE-SSS-S
T ss_pred             EecCcccccceEECCcchheeecccc------------------------cceeEEEeccccccceeeeeeEEEcCCC-C
Confidence            222223589999999996 7888776                        347788875  344 2  1223222221 1


Q ss_pred             CCceeEEEe-CCEEEEecCCCCeEEEEcC
Q 019290          316 NSVSEVQEY-GEYLYTGSSVQPYVVVIKA  343 (343)
Q Consensus       316 ~~~~~~~~~-~g~l~i~~~~~~~i~~~~~  343 (343)
                      ..+-.+..+ +|+||++....+.|.+|++
T Consensus       184 g~pDG~~vD~~G~l~va~~~~~~I~~~~p  212 (246)
T PF08450_consen  184 GYPDGLAVDSDGNLWVADWGGGRIVVFDP  212 (246)
T ss_dssp             CEEEEEEEBTTS-EEEEEETTTEEEEEET
T ss_pred             cCCCcceEcCCCCEEEEEcCCCEEEEECC
Confidence            234455555 8999999999999999985

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.56  E-value=1e-11  Score=112.81  Aligned_cols=256  Identities=16%  Similarity=0.216  Sum_probs=149.1

Q ss_pred             ccccccCCCCCCCceEEEcCCCCeeEEEe-cCCEEEEEEcC-CCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEE
Q 019290           25 SYQQLQLPGVVGPESLAFDCNGEGPYVGV-SDGRILKWKAA-NSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIK  102 (343)
Q Consensus        25 ~~~~~~~~~~~~p~~l~~d~~g~~l~~~~-~~g~i~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~  102 (343)
                      .++.++.++  .|..++++++|+.+|++. ..++|..|+.+ ++.+.....                  ....+.|.+++
T Consensus        27 ~~~~~~~~~--~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~------------------~~~~~~p~~i~   86 (330)
T PRK11028         27 LLQVVDVPG--QVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAE------------------SPLPGSPTHIS   86 (330)
T ss_pred             eeeEEecCC--CCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeee------------------ecCCCCceEEE
Confidence            344444443  699999999999888764 46778777664 344443321                  01223578999


Q ss_pred             EeCCCCeEEEEeCCC-eEEEEeCCC-CeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCC
Q 019290          103 FNPVTCDLYIADAYF-GLMVVGPNG-GQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRS  180 (343)
Q Consensus       103 ~~~~~~~l~v~~~~~-gi~~~d~~~-~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~  180 (343)
                      ++++++.+|++.... .+..++.++ +...........  ...++.++++++...+|+++..                 .
T Consensus        87 ~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~--~~~~~~~~~~p~g~~l~v~~~~-----------------~  147 (330)
T PRK11028         87 TDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEG--LEGCHSANIDPDNRTLWVPCLK-----------------E  147 (330)
T ss_pred             ECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccC--CCcccEeEeCCCCCEEEEeeCC-----------------C
Confidence            999666788886544 477777653 222111111111  2457889999943357777654                 4


Q ss_pred             ceEEEEeCCC-CceEE------eecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCc-cccccceeeecCC------
Q 019290          181 GRLLKYDPLK-KNVTV------MYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGE-RTTYTPQLFAEMP------  246 (343)
Q Consensus       181 ~~v~~~d~~~-~~~~~------~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~------  246 (343)
                      +.|..||.++ +.+..      -......|..++++++++.+|+++...+.|.+|+++.. ..+.....+...+      
T Consensus       148 ~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~  227 (330)
T PRK11028        148 DRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDT  227 (330)
T ss_pred             CEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCC
Confidence            5677777653 32211      11234668899999999999999888899999998732 1111111111111      


Q ss_pred             CCCCceeeCCCCC-EEEEeccCCCccccccccccccccCCCcccCCCeEEEECCCCCEEEEe-eCCCCCccCCceeEEEe
Q 019290          247 RFPDNIKSDSKGE-FWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVL-DGNEGNTLNSVSEVQEY  324 (343)
Q Consensus       247 ~~p~~i~~d~~G~-lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~-~~~~~~~~~~~~~~~~~  324 (343)
                      ..+..+.++++|+ +|+++.. .+.+                     .++.++.++...... ..+.+..... -.+..+
T Consensus       228 ~~~~~i~~~pdg~~lyv~~~~-~~~I---------------------~v~~i~~~~~~~~~~~~~~~~~~p~~-~~~~~d  284 (330)
T PRK11028        228 RWAADIHITPDGRHLYACDRT-ASLI---------------------SVFSVSEDGSVLSFEGHQPTETQPRG-FNIDHS  284 (330)
T ss_pred             ccceeEEECCCCCEEEEecCC-CCeE---------------------EEEEEeCCCCeEEEeEEEeccccCCc-eEECCC
Confidence            1233578899986 6666433 2322                     455556665432222 1121211111 122345


Q ss_pred             CCEEEEecCCCCeEEEEc
Q 019290          325 GEYLYTGSSVQPYVVVIK  342 (343)
Q Consensus       325 ~g~l~i~~~~~~~i~~~~  342 (343)
                      +..||+++..++.|.+|+
T Consensus       285 g~~l~va~~~~~~v~v~~  302 (330)
T PRK11028        285 GKYLIAAGQKSHHISVYE  302 (330)
T ss_pred             CCEEEEEEccCCcEEEEE
Confidence            778999998888888774

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.54  E-value=7.8e-11  Score=102.42  Aligned_cols=253  Identities=15%  Similarity=0.179  Sum_probs=160.5

Q ss_pred             CCCCceEEEcCCCCeeEEEecC---CE--EEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCC
Q 019290           34 VVGPESLAFDCNGEGPYVGVSD---GR--ILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTC  108 (343)
Q Consensus        34 ~~~p~~l~~d~~g~~l~~~~~~---g~--i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~  108 (343)
                      ..+|.-|++++++++||+....   |+  -|++|++.++++.+....                 .....|..+++++++.
T Consensus        39 ~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~-----------------~~g~~p~yvsvd~~g~  101 (346)
T COG2706          39 LGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQT-----------------LPGSPPCYVSVDEDGR  101 (346)
T ss_pred             cCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccc-----------------cCCCCCeEEEECCCCC
Confidence            3489999999999999976543   44  456677767776653211                 1222358899998444


Q ss_pred             eEEEEeCCCe-EEEEeCCC-CeEEEcccc--------cCCCCccCcceeEEeCCCC-eEEEEeCCcccccccceeeeeec
Q 019290          109 DLYIADAYFG-LMVVGPNG-GQAQQLASS--------AGGIPFRFTNDLDIDPNTG-IVYFTDSSIYFQRRQYFMSIATG  177 (343)
Q Consensus       109 ~l~v~~~~~g-i~~~d~~~-~~~~~~~~~--------~~~~~~~~~~~i~~d~~dg-~l~v~~~~~~~~~~~~~~~~~~~  177 (343)
                      .|+++....| |.++-.+. |.+....+.        .+.+...+++...++| ++ .+++.|.+               
T Consensus       102 ~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP-~~~~l~v~DLG---------------  165 (346)
T COG2706         102 FVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTP-DGRYLVVPDLG---------------  165 (346)
T ss_pred             EEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCC-CCCEEEEeecC---------------
Confidence            6777765555 44444422 443332111        1122234577888999 46 57776765               


Q ss_pred             CCCceEEEEeCCCCceEEe----ecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCc-cccccceeeecCC-CC---
Q 019290          178 DRSGRLLKYDPLKKNVTVM----YNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGE-RTTYTPQLFAEMP-RF---  248 (343)
Q Consensus       178 ~~~~~v~~~d~~~~~~~~~----~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~-~~---  248 (343)
                        ..+|+.|+.+.|+....    .....+|.=|+|+|+++..|+...-+++|.++..+.. +.+.+.+.+..++ .+   
T Consensus       166 --~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~  243 (346)
T COG2706         166 --TDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGT  243 (346)
T ss_pred             --CceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCC
Confidence              56777777766665432    3556778999999999999999889999999998764 2223333332222 11   


Q ss_pred             --CCceeeCCCCCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECCCCCEEEEe-eCCCCCccCCceeEEEeC
Q 019290          249 --PDNIKSDSKGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVL-DGNEGNTLNSVSEVQEYG  325 (343)
Q Consensus       249 --p~~i~~d~~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~-~~~~~~~~~~~~~~~~~~  325 (343)
                        ...|.++++|++..+++...+.+                     .++++|+++..+..+ ..+.+.....-..+...+
T Consensus       244 ~~~aaIhis~dGrFLYasNRg~dsI---------------------~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g  302 (346)
T COG2706         244 NWAAAIHISPDGRFLYASNRGHDSI---------------------AVFSVDPDGGKLELVGITPTEGQFPRDFNINPSG  302 (346)
T ss_pred             CceeEEEECCCCCEEEEecCCCCeE---------------------EEEEEcCCCCEEEEEEEeccCCcCCccceeCCCC
Confidence              12267899999888877756655                     888999986554443 333332212222223336


Q ss_pred             CEEEEecCCCCeEEEEc
Q 019290          326 EYLYTGSSVQPYVVVIK  342 (343)
Q Consensus       326 g~l~i~~~~~~~i~~~~  342 (343)
                      +-|++++-.++.|.+|.
T Consensus       303 ~~Liaa~q~sd~i~vf~  319 (346)
T COG2706         303 RFLIAANQKSDNITVFE  319 (346)
T ss_pred             CEEEEEccCCCcEEEEE
Confidence            67999999999998874

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=99.45  E-value=2.9e-13  Score=96.18  Aligned_cols=88  Identities=55%  Similarity=1.004  Sum_probs=71.9

Q ss_pred             ceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEeecCCCCcceeEEecCCCEEEEEEcCCCe
Q 019290          145 NDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESATLK  224 (343)
Q Consensus       145 ~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~  224 (343)
                      |++++++++|.+||++.+..+...++.+.+.++.+.|+|++|||.+++.+.+..++..|||+++++|+..++++++...+
T Consensus         1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~~~R   80 (89)
T PF03088_consen    1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETGRYR   80 (89)
T ss_dssp             -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGGGTE
T ss_pred             CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEeccCce
Confidence            57889984499999999999999999888888888999999999999999999999999999999999999999999999


Q ss_pred             EEEEEccC
Q 019290          225 ILRFWLQG  232 (343)
Q Consensus       225 i~~~~~~~  232 (343)
                      |.+|.+.|
T Consensus        81 i~rywl~G   88 (89)
T PF03088_consen   81 ILRYWLKG   88 (89)
T ss_dssp             EEEEESSS
T ss_pred             EEEEEEeC
Confidence            99999876

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.43  E-value=1.2e-10  Score=106.31  Aligned_cols=214  Identities=21%  Similarity=0.283  Sum_probs=127.0

Q ss_pred             CCCCCceEEEcCCCCeeEEEe-cCCEEEEEEcCC-CCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeE
Q 019290           33 GVVGPESLAFDCNGEGPYVGV-SDGRILKWKAAN-SGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDL  110 (343)
Q Consensus        33 ~~~~p~~l~~d~~g~~l~~~~-~~g~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l  110 (343)
                      ....|..++++++|+.+|++. .+|.+..|+.+. +............      |.+..........||.+.++++++.+
T Consensus        85 ~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~------g~g~~~~rq~~~h~H~v~~~pdg~~v  158 (345)
T PF10282_consen   85 GGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHE------GSGPNPDRQEGPHPHQVVFSPDGRFV  158 (345)
T ss_dssp             SSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESE------EEESSTTTTSSTCEEEEEE-TTSSEE
T ss_pred             CCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccC------CCCCcccccccccceeEEECCCCCEE
Confidence            345799999999999888664 577787776654 3333321100000      00000011334568999999966789


Q ss_pred             EEEeCC-CeEEEEeCCCC--eEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCce--EEE
Q 019290          111 YIADAY-FGLMVVGPNGG--QAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGR--LLK  185 (343)
Q Consensus       111 ~v~~~~-~gi~~~d~~~~--~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~--v~~  185 (343)
                      |+++-+ +.|+.|+.+..  ++...... .......|..++++++...+|+.+..                 .+.  ++.
T Consensus       159 ~v~dlG~D~v~~~~~~~~~~~l~~~~~~-~~~~G~GPRh~~f~pdg~~~Yv~~e~-----------------s~~v~v~~  220 (345)
T PF10282_consen  159 YVPDLGADRVYVYDIDDDTGKLTPVDSI-KVPPGSGPRHLAFSPDGKYAYVVNEL-----------------SNTVSVFD  220 (345)
T ss_dssp             EEEETTTTEEEEEEE-TTS-TEEEEEEE-ECSTTSSEEEEEE-TTSSEEEEEETT-----------------TTEEEEEE
T ss_pred             EEEecCCCEEEEEEEeCCCceEEEeecc-ccccCCCCcEEEEcCCcCEEEEecCC-----------------CCcEEEEe
Confidence            999865 45777766543  35442211 22234679999999943468887643                 334  455


Q ss_pred             EeCCCCceEEee------cC---CCCcceeEEecCCCEEEEEEcCCCeEEEEEccCc-cccccceeeecCCCCCCceeeC
Q 019290          186 YDPLKKNVTVMY------NG---LSFPNGVALSNNNSFLLLAESATLKILRFWLQGE-RTTYTPQLFAEMPRFPDNIKSD  255 (343)
Q Consensus       186 ~d~~~~~~~~~~------~~---~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~p~~i~~d  255 (343)
                      ++..++.++.+.      .+   ...+.+|++++||++||+++...+.|..|+++.. +.+.....+......|.++++|
T Consensus       221 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s  300 (345)
T PF10282_consen  221 YDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFS  300 (345)
T ss_dssp             EETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-
T ss_pred             ecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEe
Confidence            554456554322      11   1257889999999999999999999999999643 2222222222223359999999


Q ss_pred             CCCCE-EEEeccCCCcc
Q 019290          256 SKGEF-WIAMNSARGKI  271 (343)
Q Consensus       256 ~~G~l-wi~~~~~~~~~  271 (343)
                      ++|+. |++... .+.+
T Consensus       301 ~~g~~l~Va~~~-s~~v  316 (345)
T PF10282_consen  301 PDGRYLYVANQD-SNTV  316 (345)
T ss_dssp             TTSSEEEEEETT-TTEE
T ss_pred             CCCCEEEEEecC-CCeE
Confidence            99975 555444 4433

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=99.43  E-value=1.6e-10  Score=106.38  Aligned_cols=172  Identities=21%  Similarity=0.325  Sum_probs=111.4

Q ss_pred             CCCCCCceEEEcCCCCeeEEEec------------C-CEEEEEEcCC--CC---eEEeeecCCCccccccCCCCCcccCC
Q 019290           32 PGVVGPESLAFDCNGEGPYVGVS------------D-GRILKWKAAN--SG---WTEFATTAPHRAREICDGSTNTTLEP   93 (343)
Q Consensus        32 ~~~~~p~~l~~d~~g~~l~~~~~------------~-g~i~~~d~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (343)
                      |.+.+|..|++|++|+ +|++..            . ++|++++..+  +.   .+.|.                    .
T Consensus        11 p~~~~P~~ia~d~~G~-l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa--------------------~   69 (367)
T TIGR02604        11 PLLRNPIAVCFDERGR-LWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFA--------------------E   69 (367)
T ss_pred             CccCCCceeeECCCCC-EEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEee--------------------c
Confidence            6678999999999999 665532            2 3898887643  22   23332                    3


Q ss_pred             CcCCeeeEEEeCCCCeEEEEeCCCeEEEE-eCCC-----CeEEEcccccCCC---CccCcceeEEeCCCCeEEEEeCCcc
Q 019290           94 LCGRPLGIKFNPVTCDLYIADAYFGLMVV-GPNG-----GQAQQLASSAGGI---PFRFTNDLDIDPNTGIVYFTDSSIY  164 (343)
Q Consensus        94 ~~~~p~gi~~~~~~~~l~v~~~~~gi~~~-d~~~-----~~~~~~~~~~~~~---~~~~~~~i~~d~~dg~l~v~~~~~~  164 (343)
                      ....|.||++.+ ++ |||++ ...|+++ +.+.     ++.+.+.......   ....++++++++ ||.||++.....
T Consensus        70 ~l~~p~Gi~~~~-~G-lyV~~-~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~  145 (367)
T TIGR02604        70 ELSMVTGLAVAV-GG-VYVAT-PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTL  145 (367)
T ss_pred             CCCCccceeEec-CC-EEEeC-CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCC
Confidence            345689999997 66 99984 5678877 4432     1334343322211   245688999999 699999876421


Q ss_pred             cccc--cceeeeeecCCCceEEEEeCCCCceEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEE
Q 019290          165 FQRR--QYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFW  229 (343)
Q Consensus       165 ~~~~--~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~  229 (343)
                      ....  ............+.++|+++++++.+.+..++..+++++++++|+ +|+++.......++.
T Consensus       146 ~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~-l~~tdn~~~~~~~i~  211 (367)
T TIGR02604       146 ASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGD-VFFCDNDDPPLCRVT  211 (367)
T ss_pred             CceeccCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCC-EEEEccCCCceeEEc
Confidence            1000  000000011124689999999888888888889999999999876 788876555555443

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.41  E-value=6.6e-10  Score=96.73  Aligned_cols=234  Identities=17%  Similarity=0.241  Sum_probs=148.7

Q ss_pred             ccccccCCCCCCCceEEEcCCCCeeEEE-ecCCEEEEEEcCC-CCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEE
Q 019290           25 SYQQLQLPGVVGPESLAFDCNGEGPYVG-VSDGRILKWKAAN-SGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIK  102 (343)
Q Consensus        25 ~~~~~~~~~~~~p~~l~~d~~g~~l~~~-~~~g~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~  102 (343)
                      ++-+..+++ ..|-.+++|++|+.++++ .+.|.|..+..+. +..........+.      +.+.. .......++...
T Consensus        80 ~ln~~~~~g-~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~------g~~p~-~rQ~~~h~H~a~  151 (346)
T COG2706          80 FLNRQTLPG-SPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHT------GSGPH-ERQESPHVHSAN  151 (346)
T ss_pred             EeeccccCC-CCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecC------CCCCC-ccccCCccceee
Confidence            344445554 356999999999988865 4556666665433 3322221100000      11111 112233467788


Q ss_pred             EeCCCCeEEEEeCC-CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCe-EEEEeCCcccccccceeeeeecCCC
Q 019290          103 FNPVTCDLYIADAY-FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGI-VYFTDSSIYFQRRQYFMSIATGDRS  180 (343)
Q Consensus       103 ~~~~~~~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~-l~v~~~~~~~~~~~~~~~~~~~~~~  180 (343)
                      ++++++.|++.|-+ +.|+.|+.+.|+.+..... .-.+...|..|++.|+ ++ .|+.+.               .+..
T Consensus       152 ~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~-~v~~G~GPRHi~FHpn-~k~aY~v~E---------------L~st  214 (346)
T COG2706         152 FTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPA-EVKPGAGPRHIVFHPN-GKYAYLVNE---------------LNST  214 (346)
T ss_pred             eCCCCCEEEEeecCCceEEEEEcccCcccccccc-ccCCCCCcceEEEcCC-CcEEEEEec---------------cCCE
Confidence            99955567777644 5688888888877665322 2245578999999995 65 565432               2224


Q ss_pred             ceEEEEeCCCCceEEeec------C---CCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCC-CCC
Q 019290          181 GRLLKYDPLKKNVTVMYN------G---LSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPR-FPD  250 (343)
Q Consensus       181 ~~v~~~d~~~~~~~~~~~------~---~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~p~  250 (343)
                      --++.|++..++++.+..      +   -.....|.+++||+.||+++...+.|+.|.++.+...-+........+ .|+
T Consensus       215 V~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR  294 (346)
T COG2706         215 VDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPR  294 (346)
T ss_pred             EEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCc
Confidence            457788877788776532      2   233567889999999999999999999999886432011111222334 599


Q ss_pred             ceeeCCCCCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECCC-CCEE
Q 019290          251 NIKSDSKGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVN-GNVV  304 (343)
Q Consensus       251 ~i~~d~~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~-g~~~  304 (343)
                      .+.+++.|++.++.+.+.+.+                     .|+++|++ |.+.
T Consensus       295 ~F~i~~~g~~Liaa~q~sd~i---------------------~vf~~d~~TG~L~  328 (346)
T COG2706         295 DFNINPSGRFLIAANQKSDNI---------------------TVFERDKETGRLT  328 (346)
T ss_pred             cceeCCCCCEEEEEccCCCcE---------------------EEEEEcCCCceEE
Confidence            999999999999988867755                     89999985 5443

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.35  E-value=1.1e-09  Score=99.57  Aligned_cols=193  Identities=8%  Similarity=0.074  Sum_probs=116.8

Q ss_pred             CCceEEEcCCCCeeEEEe-cCCEEEEEEcCC-CCeE-EeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEE
Q 019290           36 GPESLAFDCNGEGPYVGV-SDGRILKWKAAN-SGWT-EFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYI  112 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~-~~g~i~~~d~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v  112 (343)
                      .|..++++++|+.+|++. .++.|..|+.++ +... ....                  ......|++++++++++.+|+
T Consensus        81 ~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~------------------~~~~~~~~~~~~~p~g~~l~v  142 (330)
T PRK11028         81 SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQI------------------IEGLEGCHSANIDPDNRTLWV  142 (330)
T ss_pred             CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceee------------------ccCCCcccEeEeCCCCCEEEE
Confidence            689999999999888654 477788887653 2111 1100                  011235788999986668888


Q ss_pred             EeCCCe-EEEEeCCC-CeEEEcc-cccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCC
Q 019290          113 ADAYFG-LMVVGPNG-GQAQQLA-SSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPL  189 (343)
Q Consensus       113 ~~~~~g-i~~~d~~~-~~~~~~~-~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~  189 (343)
                      ++...+ |..+|.++ +.+.... ..........|+.++++++...+|+++..                 .+.|..|+.+
T Consensus       143 ~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~-----------------~~~v~v~~~~  205 (330)
T PRK11028        143 PCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNEL-----------------NSSVDVWQLK  205 (330)
T ss_pred             eeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecC-----------------CCEEEEEEEe
Confidence            876644 88888765 3332110 00011123568899999943447777653                 3455555443


Q ss_pred             --CCceEEeec------C---CCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeec--CCCCCCceeeCC
Q 019290          190 --KKNVTVMYN------G---LSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAE--MPRFPDNIKSDS  256 (343)
Q Consensus       190 --~~~~~~~~~------~---~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~p~~i~~d~  256 (343)
                        +++.+.+..      .   ...+.+++++|+++.+|+++...+.|.+|+++.+..  ..+....  ....|.++.+++
T Consensus       206 ~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~--~~~~~~~~~~~~~p~~~~~~~  283 (330)
T PRK11028        206 DPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGS--VLSFEGHQPTETQPRGFNIDH  283 (330)
T ss_pred             CCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCC--eEEEeEEEeccccCCceEECC
Confidence              444432211      1   112346889999999999987789999999864321  1111211  223588999999


Q ss_pred             CCC-EEEEec
Q 019290          257 KGE-FWIAMN  265 (343)
Q Consensus       257 ~G~-lwi~~~  265 (343)
                      +|+ ||++..
T Consensus       284 dg~~l~va~~  293 (330)
T PRK11028        284 SGKYLIAAGQ  293 (330)
T ss_pred             CCCEEEEEEc
Confidence            995 455543

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.32  E-value=9.4e-09  Score=91.40  Aligned_cols=237  Identities=16%  Similarity=0.109  Sum_probs=142.8

Q ss_pred             CCceEEEcCCCCeeEE-EecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEe
Q 019290           36 GPESLAFDCNGEGPYV-GVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIAD  114 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~-~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~  114 (343)
                      .|.+++++++|..+|+ +..++.|+.||..+++.....                    .....+..++++++++.+|++.
T Consensus        32 ~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~--------------------~~~~~~~~~~~~~~g~~l~~~~   91 (300)
T TIGR03866        32 RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTL--------------------PSGPDPELFALHPNGKILYIAN   91 (300)
T ss_pred             CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEec--------------------cCCCCccEEEECCCCCEEEEEc
Confidence            5789999999997764 456788999998876543211                    1112245678888555677775


Q ss_pred             CCC-eEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCce
Q 019290          115 AYF-GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNV  193 (343)
Q Consensus       115 ~~~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~  193 (343)
                      ... .+..+|.++++.......  .   ..+.++++++ +|.++++....                ...+..+|..+++.
T Consensus        92 ~~~~~l~~~d~~~~~~~~~~~~--~---~~~~~~~~~~-dg~~l~~~~~~----------------~~~~~~~d~~~~~~  149 (300)
T TIGR03866        92 EDDNLVTVIDIETRKVLAEIPV--G---VEPEGMAVSP-DGKIVVNTSET----------------TNMAHFIDTKTYEI  149 (300)
T ss_pred             CCCCeEEEEECCCCeEEeEeeC--C---CCcceEEECC-CCCEEEEEecC----------------CCeEEEEeCCCCeE
Confidence            433 488999987653322111  1   2367899999 58776644320                22355678776655


Q ss_pred             EEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeec----CCCCCCceeeCCCCCE-EEEeccCC
Q 019290          194 TVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAE----MPRFPDNIKSDSKGEF-WIAMNSAR  268 (343)
Q Consensus       194 ~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~----~~~~p~~i~~d~~G~l-wi~~~~~~  268 (343)
                      .........+..++++++++.++++....+.|..|++.+.........-..    ....|.+++++++|+. |++...  
T Consensus       150 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~--  227 (300)
T TIGR03866       150 VDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGP--  227 (300)
T ss_pred             EEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCC--
Confidence            332222345678899999998888766678999999875322111110000    1113557888999975 665543  


Q ss_pred             CccccccccccccccCCCcccCCCeEEEECCC-CCEEEEeeCCCCCccCCceeEE--EeCCEEEEecCCCCeEEEEcC
Q 019290          269 GKIESNKKTAFCEETAKPWFLRDPVGVKFDVN-GNVVDVLDGNEGNTLNSVSEVQ--EYGEYLYTGSSVQPYVVVIKA  343 (343)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~~~~~~--~~~g~l~i~~~~~~~i~~~~~  343 (343)
                                            ...+..+|.+ ++........ .    .+..+.  +++..||+++..++.|.+++.
T Consensus       228 ----------------------~~~i~v~d~~~~~~~~~~~~~-~----~~~~~~~~~~g~~l~~~~~~~~~i~v~d~  278 (300)
T TIGR03866       228 ----------------------ANRVAVVDAKTYEVLDYLLVG-Q----RVWQLAFTPDEKYLLTTNGVSNDVSVIDV  278 (300)
T ss_pred             ----------------------CCeEEEEECCCCcEEEEEEeC-C----CcceEEECCCCCEEEEEcCCCCeEEEEEC
Confidence                                  2356677764 5544443321 1    122222  345678887777888888763

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=99.22  E-value=8.9e-09  Score=91.05  Aligned_cols=193  Identities=19%  Similarity=0.185  Sum_probs=122.6

Q ss_pred             eeeEEEeCCCCeEEEEeCCC-------------eEEEEeCCCCeEEEccccc--CCCCccCcceeEEeCCC-----CeEE
Q 019290           98 PLGIKFNPVTCDLYIADAYF-------------GLMVVGPNGGQAQQLASSA--GGIPFRFTNDLDIDPNT-----GIVY  157 (343)
Q Consensus        98 p~gi~~~~~~~~l~v~~~~~-------------gi~~~d~~~~~~~~~~~~~--~~~~~~~~~~i~~d~~d-----g~l~  157 (343)
                      +.++.+|+ .++|||.|++.             .|+.+|++++++.......  ...+...++++++|..+     +.+|
T Consensus         3 V~~v~iD~-~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aY   81 (287)
T PF03022_consen    3 VQRVQIDE-CGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAY   81 (287)
T ss_dssp             EEEEEE-T-TSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEE
T ss_pred             ccEEEEcC-CCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEE
Confidence            46788898 99999998652             4999999998764433222  12235788999999732     4799


Q ss_pred             EEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEeecC--------------------CCCcceeEEec---CCCE
Q 019290          158 FTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNG--------------------LSFPNGVALSN---NNSF  214 (343)
Q Consensus       158 v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~--------------------~~~~~~i~~~~---d~~~  214 (343)
                      ++|.+                 ..+|..||..+++..++..+                    ..+..|++.++   +++.
T Consensus        82 ItD~~-----------------~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~  144 (287)
T PF03022_consen   82 ITDSG-----------------GPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRW  144 (287)
T ss_dssp             EEETT-----------------TCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-E
T ss_pred             EeCCC-----------------cCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccE
Confidence            99986                 44688888877765544321                    11246677765   7789


Q ss_pred             EEEEEcCCCeEEEEEccC--cccc-------ccceeeecCCCCCCceeeCCCCCEEEEeccCCCccccccccccccccCC
Q 019290          215 LLLAESATLKILRFWLQG--ERTT-------YTPQLFAEMPRFPDNIKSDSKGEFWIAMNSARGKIESNKKTAFCEETAK  285 (343)
Q Consensus       215 lyv~~~~~~~i~~~~~~~--~~~~-------~~~~~~~~~~~~p~~i~~d~~G~lwi~~~~~~~~~~~~~~~~~~~~~~~  285 (343)
                      ||+....+..+|+....-  +...       ...+.+....+..++++.|++|+||++...                   
T Consensus       145 LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~-------------------  205 (287)
T PF03022_consen  145 LYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVE-------------------  205 (287)
T ss_dssp             EEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTEEEEEECC-------------------
T ss_pred             EEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEECCCCcEEEecCC-------------------
Confidence            999988788899987531  1110       112222222234678999999999999987                   


Q ss_pred             CcccCCCeEEEECCCC-----CEEEEeeCCCCCccCCceeEEEeC---CEEEEecCC
Q 019290          286 PWFLRDPVGVKFDVNG-----NVVDVLDGNEGNTLNSVSEVQEYG---EYLYTGSSV  334 (343)
Q Consensus       286 ~~~~~~~~v~~~d~~g-----~~~~~~~~~~~~~~~~~~~~~~~~---g~l~i~~~~  334 (343)
                           .++|.+.++++     +....+.+++  ....+..+..+.   |+||+.+..
T Consensus       206 -----~~aI~~w~~~~~~~~~~~~~l~~d~~--~l~~pd~~~i~~~~~g~L~v~snr  255 (287)
T PF03022_consen  206 -----QNAIGCWDPDGPYTPENFEILAQDPR--TLQWPDGLKIDPEGDGYLWVLSNR  255 (287)
T ss_dssp             -----CTEEEEEETTTSB-GCCEEEEEE-CC---GSSEEEEEE-T--TS-EEEEE-S
T ss_pred             -----CCeEEEEeCCCCcCccchheeEEcCc--eeeccceeeeccccCceEEEEECc
Confidence                 56999999987     4444455443  356677766655   999997643

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.21  E-value=6.8e-08  Score=85.83  Aligned_cols=172  Identities=16%  Similarity=0.108  Sum_probs=103.7

Q ss_pred             CeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCCC-eEEEEeCC
Q 019290           47 EGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYF-GLMVVGPN  125 (343)
Q Consensus        47 ~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~~-gi~~~d~~  125 (343)
                      ++++++..++.+..||..+++.....                    .....+.+++++++++.+|++.... .++.+|.+
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~~~~~~~--------------------~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~   61 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATLEVTRTF--------------------PVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLA   61 (300)
T ss_pred             cEEEEecCCCEEEEEECCCCceEEEE--------------------ECCCCCCceEECCCCCEEEEEECCCCeEEEEECC
Confidence            43446677889999998776533221                    1112356788988444577765444 48899998


Q ss_pred             CCeEEEcccccCCCCccCcceeEEeCCCCe-EEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEeecCCCCcc
Q 019290          126 GGQAQQLASSAGGIPFRFTNDLDIDPNTGI-VYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSFPN  204 (343)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~  204 (343)
                      +++........     ..+..+++++. ++ +|++...                 .+.|..+|..+++..........+.
T Consensus        62 ~~~~~~~~~~~-----~~~~~~~~~~~-g~~l~~~~~~-----------------~~~l~~~d~~~~~~~~~~~~~~~~~  118 (300)
T TIGR03866        62 TGEVIGTLPSG-----PDPELFALHPN-GKILYIANED-----------------DNLVTVIDIETRKVLAEIPVGVEPE  118 (300)
T ss_pred             CCcEEEeccCC-----CCccEEEECCC-CCEEEEEcCC-----------------CCeEEEEECCCCeEEeEeeCCCCcc
Confidence            87654422211     22456788884 55 6665432                 4578889987655433233234578


Q ss_pred             eeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEE-EEec
Q 019290          205 GVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFW-IAMN  265 (343)
Q Consensus       205 ~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lw-i~~~  265 (343)
                      +++++++++.++++......++.++..+.    +..........|..+.++++|+.+ ++..
T Consensus       119 ~~~~~~dg~~l~~~~~~~~~~~~~d~~~~----~~~~~~~~~~~~~~~~~s~dg~~l~~~~~  176 (300)
T TIGR03866       119 GMAVSPDGKIVVNTSETTNMAHFIDTKTY----EIVDNVLVDQRPRFAEFTADGKELWVSSE  176 (300)
T ss_pred             eEEECCCCCEEEEEecCCCeEEEEeCCCC----eEEEEEEcCCCccEEEECCCCCEEEEEcC
Confidence            89999999987776554455666776432    111111122346778889998754 5543

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=99.15  E-value=2e-08  Score=86.28  Aligned_cols=203  Identities=16%  Similarity=0.196  Sum_probs=112.4

Q ss_pred             cccccCCCCC-CCceEEEcCCCCeeE-EEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEE
Q 019290           26 YQQLQLPGVV-GPESLAFDCNGEGPY-VGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKF  103 (343)
Q Consensus        26 ~~~~~~~~~~-~p~~l~~d~~g~~l~-~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~  103 (343)
                      ++..++|++. .+.+|+++++.+.|| +....+.|+.++.++.-...+.-                   ...+-+.||++
T Consensus        12 i~~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l-------------------~g~~D~EgI~y   72 (248)
T PF06977_consen   12 IEAKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPL-------------------DGFGDYEGITY   72 (248)
T ss_dssp             EEEEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE--------------------SS-SSEEEEEE
T ss_pred             EeeeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeC-------------------CCCCCceeEEE
Confidence            4456788655 499999999866577 45567889999987654444421                   22445789999


Q ss_pred             eCCCCeEEEEeCC-CeEEEEeC--CCCe-----EEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeee
Q 019290          104 NPVTCDLYIADAY-FGLMVVGP--NGGQ-----AQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIA  175 (343)
Q Consensus       104 ~~~~~~l~v~~~~-~gi~~~d~--~~~~-----~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~  175 (343)
                      .. ++.+.+++.. ..++.++.  .+..     ++.+............-+++.|+..+++|++-..             
T Consensus        73 ~g-~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~-------------  138 (248)
T PF06977_consen   73 LG-NGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKER-------------  138 (248)
T ss_dssp             -S-TTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEES-------------
T ss_pred             EC-CCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCC-------------
Confidence            86 7777777643 44777665  2221     1222111112223457899999966888886432             


Q ss_pred             ecCCCceEEEEeC--CCCceEEee--------cCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeee--
Q 019290          176 TGDRSGRLLKYDP--LKKNVTVMY--------NGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFA--  243 (343)
Q Consensus       176 ~~~~~~~v~~~d~--~~~~~~~~~--------~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~--  243 (343)
                         ....|+.++.  .........        .....+.++++++..+.||+.+.....|..++.+|.-. .......  
T Consensus       139 ---~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~-~~~~L~~g~  214 (248)
T PF06977_consen  139 ---KPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVV-SSLSLDRGF  214 (248)
T ss_dssp             ---SSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EE-EEEE-STTG
T ss_pred             ---CChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEE-EEEEeCCcc
Confidence               1345777764  212221111        12345889999999999999999999999999766322 1111111  


Q ss_pred             ----c-CCCCCCceeeCCCCCEEEEecc
Q 019290          244 ----E-MPRFPDNIKSDSKGEFWIAMNS  266 (343)
Q Consensus       244 ----~-~~~~p~~i~~d~~G~lwi~~~~  266 (343)
                          + .+ .|.|+++|++|+|||++-.
T Consensus       215 ~gl~~~~~-QpEGIa~d~~G~LYIvsEp  241 (248)
T PF06977_consen  215 HGLSKDIP-QPEGIAFDPDGNLYIVSEP  241 (248)
T ss_dssp             GG-SS----SEEEEEE-TT--EEEEETT
T ss_pred             cCcccccC-CccEEEECCCCCEEEEcCC
Confidence                0 12 4899999999999999853

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=99.14  E-value=4.8e-09  Score=93.11  Aligned_cols=151  Identities=15%  Similarity=0.217  Sum_probs=99.6

Q ss_pred             CCCCceEEEcCCCCeeEEEecC------------CEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeE
Q 019290           34 VVGPESLAFDCNGEGPYVGVSD------------GRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGI  101 (343)
Q Consensus        34 ~~~p~~l~~d~~g~~l~~~~~~------------g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi  101 (343)
                      ...|.++.++++|. +|++++.            |.||++++.++....+.                    .....|+||
T Consensus       110 ~~r~ND~~v~pdG~-~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~--------------------~~~~~~NGl  168 (307)
T COG3386         110 LNRPNDGVVDPDGR-IWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLD--------------------DDLTIPNGL  168 (307)
T ss_pred             cCCCCceeEcCCCC-EEEeCCCccccCccccCCcceEEEEcCCCCEEEeec--------------------CcEEecCce
Confidence            34699999999999 6766544            46999998554333321                    225578999


Q ss_pred             EEeCCCCeEEEEeCCC-eEEEEeCCC--CeEE---EcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeee
Q 019290          102 KFNPVTCDLYIADAYF-GLMVVGPNG--GQAQ---QLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIA  175 (343)
Q Consensus       102 ~~~~~~~~l~v~~~~~-gi~~~d~~~--~~~~---~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~  175 (343)
                      ++++++..+|++++.. .|++++.+-  +.+.   .......  ....|.++++|. +|.+|++...             
T Consensus       169 a~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~--~~G~PDG~~vDa-dG~lw~~a~~-------------  232 (307)
T COG3386         169 AFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDE--EPGLPDGMAVDA-DGNLWVAAVW-------------  232 (307)
T ss_pred             EECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccC--CCCCCCceEEeC-CCCEEEeccc-------------
Confidence            9999666999999874 499987752  2111   1111111  124588999999 6999973322             


Q ss_pred             ecCCCceEEEEeCCCCceEEeecCCCCcceeEEe-cCCCEEEEEEcCCCe
Q 019290          176 TGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVALS-NNNSFLLLAESATLK  224 (343)
Q Consensus       176 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~i~~~-~d~~~lyv~~~~~~~  224 (343)
                         ..++|.+|++++.....+.-....+...+|. ++.++||++....+.
T Consensus       233 ---~g~~v~~~~pdG~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~~~~  279 (307)
T COG3386         233 ---GGGRVVRFNPDGKLLGEIKLPVKRPTNPAFGGPDLNTLYITSARSGM  279 (307)
T ss_pred             ---CCceEEEECCCCcEEEEEECCCCCCccceEeCCCcCEEEEEecCCCC
Confidence               1347999999944444444333566667764 567899998776533

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=99.14  E-value=2.1e-09  Score=98.79  Aligned_cols=227  Identities=20%  Similarity=0.227  Sum_probs=134.1

Q ss_pred             CCCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEe
Q 019290           35 VGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIAD  114 (343)
Q Consensus        35 ~~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~  114 (343)
                      .....+++|.+|. +|+++++| +++||+.+++.-+....+                  ..-.++.+..+. +++|||+ 
T Consensus       165 ~~V~aLv~D~~g~-lWvgT~dG-L~~fd~~~gkalql~s~~------------------~dk~I~al~~d~-qg~LWVG-  222 (671)
T COG3292         165 TPVVALVFDANGR-LWVGTPDG-LSYFDAGRGKALQLASPP------------------LDKAINALIADV-QGRLWVG-  222 (671)
T ss_pred             ccceeeeeeccCc-EEEecCCc-ceEEccccceEEEcCCCc------------------chhhHHHHHHHh-cCcEEEE-
Confidence            3567899999998 99998888 999999887655442111                  001234566776 8999999 


Q ss_pred             CCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceE
Q 019290          115 AYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVT  194 (343)
Q Consensus       115 ~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~  194 (343)
                      +..|++..+.++-.+.....   ..+...+.-+..|. +|.+|+++..                   +++|+......+.
T Consensus       223 TdqGv~~~e~~G~~~sn~~~---~lp~~~I~ll~qD~-qG~lWiGTen-------------------Gl~r~~l~rq~Lq  279 (671)
T COG3292         223 TDQGVYLQEAEGWRASNWGP---MLPSGNILLLVQDA-QGELWIGTEN-------------------GLWRTRLPRQGLQ  279 (671)
T ss_pred             eccceEEEchhhccccccCC---CCcchheeeeeccc-CCCEEEeecc-------------------cceeEecCCCCcc
Confidence            57899999998633332222   22234567778888 5999997642                   4666554333322


Q ss_pred             Ee----ecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC----------ccc-----------c------cc-ceee
Q 019290          195 VM----YNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQG----------ERT-----------T------YT-PQLF  242 (343)
Q Consensus       195 ~~----~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~----------~~~-----------~------~~-~~~~  242 (343)
                      ..    ..+.+..+.+..+.+|. ||+..  .+++++|....          ++.           +      .+ .-.+
T Consensus       280 ~~~~~~~l~~S~vnsL~~D~dGs-LWv~t--~~giv~~~~a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L  356 (671)
T COG3292         280 IPLSKMHLGVSTVNSLWLDTDGS-LWVGT--YGGIVRYLTADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGEL  356 (671)
T ss_pred             ccccccCCccccccceeeccCCC-Eeeec--cCceEEEecchhhheeeeecCCCchhhhhccCchhcccceeeccccceE
Confidence            11    12334567777777775 66653  34566655331          000           0      00 0000


Q ss_pred             ecCCC------------CCCc---eeeCCCCCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECCCCCEEEEe
Q 019290          243 AEMPR------------FPDN---IKSDSKGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVL  307 (343)
Q Consensus       243 ~~~~~------------~p~~---i~~d~~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~  307 (343)
                      ...++            .+.+   .++|++|.+|+++..                         .++.+++.+. .=..+
T Consensus       357 ~van~stG~~v~sv~q~Rg~nit~~~~d~~g~lWlgs~q-------------------------~GLsrl~n~n-~~avl  410 (671)
T COG3292         357 MVANGSTGELVRSVHQLRGMNITTTLEDSRGRLWLGSMQ-------------------------NGLSRLDNKN-EWAVL  410 (671)
T ss_pred             EEecCCCCcEEEEeeeccccccchhhhccCCcEEEEecc-------------------------cchhhhccCC-ccccc
Confidence            00000            0112   235778888888765                         3677786644 11222


Q ss_pred             eCCCCCccCCceeEEEe-CCEEEEecCCC
Q 019290          308 DGNEGNTLNSVSEVQEY-GEYLYTGSSVQ  335 (343)
Q Consensus       308 ~~~~~~~~~~~~~~~~~-~g~l~i~~~~~  335 (343)
                      ....+.....+..+.++ +++||||+.+.
T Consensus       411 de~agl~ss~V~aived~dnsLWIGTs~G  439 (671)
T COG3292         411 DEDAGLPSSEVSAIVEDPDNSLWIGTSGG  439 (671)
T ss_pred             ccccCCcccceeeeeecCCCCEEEeccCC
Confidence            33344556678888888 78899999875

>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]

Probab=99.09  E-value=2.8e-08  Score=98.61  Aligned_cols=205  Identities=19%  Similarity=0.245  Sum_probs=128.1

Q ss_pred             CCCceEEEcC-CCCeeEEEecCCEEEEEEc-CC----CCeEEeeecCCC--ccccccCCCCCcccCCCcCCeeeEEEeCC
Q 019290           35 VGPESLAFDC-NGEGPYVGVSDGRILKWKA-AN----SGWTEFATTAPH--RAREICDGSTNTTLEPLCGRPLGIKFNPV  106 (343)
Q Consensus        35 ~~p~~l~~d~-~g~~l~~~~~~g~i~~~d~-~~----~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~gi~~~~~  106 (343)
                      ++-..|+.+| +|.++..+....+|+++.. +.    ..+..++.....  +.-..| |.+..........|.||++++ 
T Consensus       407 sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~desC-GDGalA~dA~L~~PkGIa~dk-  484 (1899)
T KOG4659|consen  407 SHSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEPQDSRNNYEVVAGDGEVCLPADESC-GDGALAQDAQLIFPKGIAFDK-  484 (1899)
T ss_pred             cceeEEEecCcCceEEecCCCcceEEEeccCCccccccCeeEEeccCcCcccccccc-CcchhcccceeccCCceeEcc-
Confidence            3456788898 6884445667778888742 11    223344333221  111225 555566666777899999999 


Q ss_pred             CCeEEEEeCCCeEEEEeCCCCeEEEcccc---------------cCCCCccCcceeEEeCCCCeEEEEeCCcccccccce
Q 019290          107 TCDLYIADAYFGLMVVGPNGGQAQQLASS---------------AGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYF  171 (343)
Q Consensus       107 ~~~l~v~~~~~gi~~~d~~~~~~~~~~~~---------------~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~  171 (343)
                      .|.||++| +..|.++|.. |-+..+...               .....+.+|.+++++|-|+.+++-|..         
T Consensus       485 ~g~lYfaD-~t~IR~iD~~-giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld~n---------  553 (1899)
T KOG4659|consen  485 MGNLYFAD-GTRIRVIDTT-GIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLDTN---------  553 (1899)
T ss_pred             CCcEEEec-ccEEEEeccC-ceEEEeccCCCCccCccccccccchhheeeecccceeecCCCCeEEEeecc---------
Confidence            99999996 6779999875 444444211               112245789999999988999997755         


Q ss_pred             eeeeecCCCceEEEEeCCCCceEEee---------------------cCCCCcceeEEecCCCEEEEEEcCCCeEEEEEc
Q 019290          172 MSIATGDRSGRLLKYDPLKKNVTVMY---------------------NGLSFPNGVALSNNNSFLLLAESATLKILRFWL  230 (343)
Q Consensus       172 ~~~~~~~~~~~v~~~d~~~~~~~~~~---------------------~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~  230 (343)
                                -|+++++. +.++.+.                     ..+..+..|++.++|. ||++++.+.+|-+...
T Consensus       554 ----------vvlrit~~-~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~~G~-lyvaEsD~rriNrvr~  621 (1899)
T KOG4659|consen  554 ----------VVLRITVV-HRVRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGTDGA-LYVAESDGRRINRVRK  621 (1899)
T ss_pred             ----------eEEEEccC-ccEEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeecCCce-EEEEeccchhhhheEE
Confidence                      35555543 2332211                     1133468899999885 9999998877766542


Q ss_pred             cCccccccceeeec--------------------------CCCCCCceeeCCCCCEEEEecc
Q 019290          231 QGERTTYTPQLFAE--------------------------MPRFPDNIKSDSKGEFWIAMNS  266 (343)
Q Consensus       231 ~~~~~~~~~~~~~~--------------------------~~~~p~~i~~d~~G~lwi~~~~  266 (343)
                      -+..  +++.+++.                          .-..|..+++.|||.++|++..
T Consensus       622 ~~td--g~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPdg~v~IAD~g  681 (1899)
T KOG4659|consen  622 LSTD--GTISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPDGDVIIADSG  681 (1899)
T ss_pred             eccC--ceEEEecCCCCCCCcccccCCccccccchhhhccccCCcceEEECCCCcEEEecCC
Confidence            2100  11111110                          0013777899999999999875

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=99.06  E-value=2.3e-08  Score=90.59  Aligned_cols=168  Identities=22%  Similarity=0.248  Sum_probs=89.9

Q ss_pred             CCCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeC---CCCeEE
Q 019290           35 VGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNP---VTCDLY  111 (343)
Q Consensus        35 ~~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~---~~~~l~  111 (343)
                      ..|.+|++.++|+ +|++...|+|+.++.++.....+.....             ..........|+++++   .++.||
T Consensus         2 ~~P~~~a~~pdG~-l~v~e~~G~i~~~~~~g~~~~~v~~~~~-------------v~~~~~~gllgia~~p~f~~n~~lY   67 (331)
T PF07995_consen    2 NNPRSMAFLPDGR-LLVAERSGRIWVVDKDGSLKTPVADLPE-------------VFADGERGLLGIAFHPDFASNGYLY   67 (331)
T ss_dssp             SSEEEEEEETTSC-EEEEETTTEEEEEETTTEECEEEEE-TT-------------TBTSTTBSEEEEEE-TTCCCC-EEE
T ss_pred             CCceEEEEeCCCc-EEEEeCCceEEEEeCCCcCcceeccccc-------------ccccccCCcccceeccccCCCCEEE
Confidence            5799999999998 6777779999999944432233332110             1112233578999998   247899


Q ss_pred             EEeCC---------CeEEEEeCCCC--e---EEEcccc-cC-CCCccCcceeEEeCCCCeEEEEeCCcccccccceeeee
Q 019290          112 IADAY---------FGLMVVGPNGG--Q---AQQLASS-AG-GIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIA  175 (343)
Q Consensus       112 v~~~~---------~gi~~~d~~~~--~---~~~~~~~-~~-~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~  175 (343)
                      +.-+.         ..|.++....+  .   .+.+... .. .........|++++ ||.||++.......-    ....
T Consensus        68 v~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgp-DG~LYvs~G~~~~~~----~~~~  142 (331)
T PF07995_consen   68 VYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGP-DGKLYVSVGDGGNDD----NAQD  142 (331)
T ss_dssp             EEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-T-TSEEEEEEB-TTTGG----GGCS
T ss_pred             EEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCC-CCcEEEEeCCCCCcc----cccc
Confidence            88542         24777665433  2   2222211 11 12234567799999 699999865421100    0000


Q ss_pred             ecCCCceEEEEeCCCC-------------ceEEeecCCCCcceeEEecCCCEEEEEEcC
Q 019290          176 TGDRSGRLLKYDPLKK-------------NVTVMYNGLSFPNGVALSNNNSFLLLAESA  221 (343)
Q Consensus       176 ~~~~~~~v~~~d~~~~-------------~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~  221 (343)
                      .....++|+|+++++.             ..+.+..+++.+.++++++....||+++..
T Consensus       143 ~~~~~G~ilri~~dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G  201 (331)
T PF07995_consen  143 PNSLRGKILRIDPDGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNG  201 (331)
T ss_dssp             TTSSTTEEEEEETTSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-
T ss_pred             cccccceEEEecccCcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccC
Confidence            0112456777776532             223444556666777777663456666543

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=99.06  E-value=3.8e-07  Score=84.38  Aligned_cols=245  Identities=19%  Similarity=0.231  Sum_probs=153.3

Q ss_pred             CCceEEEcCCCCeeEEEe-cCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEe
Q 019290           36 GPESLAFDCNGEGPYVGV-SDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIAD  114 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~-~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~  114 (343)
                      .|.+++++++|..+|+.. ....+...+..   ...+...                .......|.++++.+.++.+|+.+
T Consensus        32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~---~n~~~~~----------------~~~g~~~p~~i~v~~~~~~vyv~~   92 (381)
T COG3391          32 GPGGVAVNPDGTQVYVANSGSNDVSVIDAT---SNTVTQS----------------LSVGGVYPAGVAVNPAGNKVYVTT   92 (381)
T ss_pred             CCceeEEcCccCEEEEEeecCceeeecccc---cceeeee----------------ccCCCccccceeeCCCCCeEEEec
Confidence            799999999996566543 33334444433   1111110                011125688999988667799986


Q ss_pred             CC-CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCce
Q 019290          115 AY-FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNV  193 (343)
Q Consensus       115 ~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~  193 (343)
                      .. +.+..+|.++.+.......  +   ..+.++++++.++.+|+++...               ..+.+..+|..+++.
T Consensus        93 ~~~~~v~vid~~~~~~~~~~~v--G---~~P~~~~~~~~~~~vYV~n~~~---------------~~~~vsvid~~t~~~  152 (381)
T COG3391          93 GDSNTVSVIDTATNTVLGSIPV--G---LGPVGLAVDPDGKYVYVANAGN---------------GNNTVSVIDAATNKV  152 (381)
T ss_pred             CCCCeEEEEcCcccceeeEeee--c---cCCceEEECCCCCEEEEEeccc---------------CCceEEEEeCCCCeE
Confidence            54 5699999765544332221  1   3688999999645899998741               156799999987776


Q ss_pred             EEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccc-cceeeecCCCCCCceeeCCCCC-EEEEeccCCCcc
Q 019290          194 TVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTY-TPQLFAEMPRFPDNIKSDSKGE-FWIAMNSARGKI  271 (343)
Q Consensus       194 ~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~p~~i~~d~~G~-lwi~~~~~~~~~  271 (343)
                      .........|.+++++++|..+|+++...+.|..++..+..... ...........|.++.++++|+ +|++... ..  
T Consensus       153 ~~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~-~~--  229 (381)
T COG3391         153 TATIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDG-SG--  229 (381)
T ss_pred             EEEEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEecc-CC--
Confidence            55444444679999999999999999889999999976643310 0000112233588999999996 7888765 11  


Q ss_pred             ccccccccccccCCCcccCCCeEEEECCCCCEEEEeeCCCCCccCCce-eEEEeCCEEEEecCCCCeEEEEc
Q 019290          272 ESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEGNTLNSVS-EVQEYGEYLYTGSSVQPYVVVIK  342 (343)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~~~~~~~~~-~~~~~~g~l~i~~~~~~~i~~~~  342 (343)
                                         .+.+.++|...........+.+.. .... ...+++..+|+.....+.+.+++
T Consensus       230 -------------------~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid  281 (381)
T COG3391         230 -------------------SNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVID  281 (381)
T ss_pred             -------------------CceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEe
Confidence                               137778887543333322222211 1222 22334666777766666666664

>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]

Probab=98.98  E-value=2.5e-08  Score=95.02  Aligned_cols=194  Identities=16%  Similarity=0.253  Sum_probs=135.6

Q ss_pred             ccccCCCCCCCceEEEcCCCC-eeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeC
Q 019290           27 QQLQLPGVVGPESLAFDCNGE-GPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNP  105 (343)
Q Consensus        27 ~~~~~~~~~~p~~l~~d~~g~-~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~  105 (343)
                      ..+.+|+ .-+-+|.+|...+ ++|++.....|-+-..++.+-+.|.+                   .....|.||++|.
T Consensus      1018 ~~l~~p~-~IiVGidfDC~e~mvyWtDv~g~SI~rasL~G~Ep~ti~n-------------------~~L~SPEGiAVDh 1077 (1289)
T KOG1214|consen 1018 TLLSLPG-SIIVGIDFDCRERMVYWTDVAGRSISRASLEGAEPETIVN-------------------SGLISPEGIAVDH 1077 (1289)
T ss_pred             ceEeccc-ceeeeeecccccceEEEeecCCCccccccccCCCCceeec-------------------ccCCCccceeeee
Confidence            3456663 3478999997655 66788777778887777766555532                   3456789999998


Q ss_pred             CCCeEEEEeCCC---eEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCce
Q 019290          106 VTCDLYIADAYF---GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGR  182 (343)
Q Consensus       106 ~~~~l~v~~~~~---gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~  182 (343)
                      ..+++|.+|...   ++..+|-.  +.+.+....    +..+.+|++|+-.|+||++|..+.               .-.
T Consensus      1078 ~~Rn~ywtDS~lD~IevA~LdG~--~rkvLf~td----LVNPR~iv~D~~rgnLYwtDWnRe---------------nPk 1136 (1289)
T KOG1214|consen 1078 IRRNMYWTDSVLDKIEVALLDGS--ERKVLFYTD----LVNPRAIVVDPIRGNLYWTDWNRE---------------NPK 1136 (1289)
T ss_pred             ccceeeeeccccchhheeecCCc--eeeEEEeec----ccCcceEEeecccCceeecccccc---------------CCc
Confidence            788999997642   34445432  222332221    245789999987789999998742               335


Q ss_pred             EEEEeCCCCceEEee-cCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEE
Q 019290          183 LLKYDPLKKNVTVMY-NGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFW  261 (343)
Q Consensus       183 v~~~d~~~~~~~~~~-~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lw  261 (343)
                      |-+.++++...+.+. .++..|||+.|++..+.|-|.+..++++.....++..   + +++...-..|.+++.+.+. +|
T Consensus      1137 Iets~mDG~NrRilin~DigLPNGLtfdpfs~~LCWvDAGt~rleC~~p~g~g---R-R~i~~~LqYPF~itsy~~~-fY 1211 (1289)
T KOG1214|consen 1137 IETSSMDGENRRILINTDIGLPNGLTFDPFSKLLCWVDAGTKRLECTLPDGTG---R-RVIQNNLQYPFSITSYADH-FY 1211 (1289)
T ss_pred             ceeeccCCccceEEeecccCCCCCceeCcccceeeEEecCCcceeEecCCCCc---c-hhhhhcccCceeeeecccc-ce
Confidence            667777655544444 5677899999999999999999999999998887642   2 2332323468888888776 99


Q ss_pred             EEecc
Q 019290          262 IAMNS  266 (343)
Q Consensus       262 i~~~~  266 (343)
                      .++|.
T Consensus      1212 ~TDWk 1216 (1289)
T KOG1214|consen 1212 HTDWK 1216 (1289)
T ss_pred             eeccc
Confidence            99997

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=98.92  E-value=4.8e-08  Score=90.04  Aligned_cols=107  Identities=18%  Similarity=0.142  Sum_probs=69.1

Q ss_pred             CceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCC
Q 019290           37 PESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAY  116 (343)
Q Consensus        37 p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~  116 (343)
                      -..++.|..|+ +|+++..| ++.+++.+.++..-..                  .-...+..-+.-|. ++.+||+ +.
T Consensus       208 I~al~~d~qg~-LWVGTdqG-v~~~e~~G~~~sn~~~------------------~lp~~~I~ll~qD~-qG~lWiG-Te  265 (671)
T COG3292         208 INALIADVQGR-LWVGTDQG-VYLQEAEGWRASNWGP------------------MLPSGNILLLVQDA-QGELWIG-TE  265 (671)
T ss_pred             HHHHHHHhcCc-EEEEeccc-eEEEchhhccccccCC------------------CCcchheeeeeccc-CCCEEEe-ec
Confidence            44667788888 99998877 8999887743321100                  01122334444565 8899999 57


Q ss_pred             CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCccccc
Q 019290          117 FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQR  167 (343)
Q Consensus       117 ~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~  167 (343)
                      +|+.++......+... ......+...++++..|. +|.+|+++...+..+
T Consensus       266 nGl~r~~l~rq~Lq~~-~~~~~l~~S~vnsL~~D~-dGsLWv~t~~giv~~  314 (671)
T COG3292         266 NGLWRTRLPRQGLQIP-LSKMHLGVSTVNSLWLDT-DGSLWVGTYGGIVRY  314 (671)
T ss_pred             ccceeEecCCCCcccc-ccccCCccccccceeecc-CCCEeeeccCceEEE
Confidence            8988776654433322 222333456679999999 699999998765444

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.91  E-value=1.2e-06  Score=81.10  Aligned_cols=187  Identities=19%  Similarity=0.250  Sum_probs=130.1

Q ss_pred             CCCceEEEcCCCCeeEEE-ecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEE
Q 019290           35 VGPESLAFDCNGEGPYVG-VSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIA  113 (343)
Q Consensus        35 ~~p~~l~~d~~g~~l~~~-~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~  113 (343)
                      ..|.+++..+.|+.+|+. ...+.+..+|..+.......                    .....|.+++++++++.+|++
T Consensus        74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~--------------------~vG~~P~~~~~~~~~~~vYV~  133 (381)
T COG3391          74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSI--------------------PVGLGPVGLAVDPDGKYVYVA  133 (381)
T ss_pred             ccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEe--------------------eeccCCceEEECCCCCEEEEE
Confidence            579999999999977754 45688999986554433321                    112268999999977799999


Q ss_pred             eCC---CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCe-EEEEeCCcccccccceeeeeecCCCceEEEEeCC
Q 019290          114 DAY---FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGI-VYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPL  189 (343)
Q Consensus       114 ~~~---~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~  189 (343)
                      +..   +-+..+|..+.+.......  +   ..+.++++++. |. +|+++..                 .+.|..+|.+
T Consensus       134 n~~~~~~~vsvid~~t~~~~~~~~v--G---~~P~~~a~~p~-g~~vyv~~~~-----------------~~~v~vi~~~  190 (381)
T COG3391         134 NAGNGNNTVSVIDAATNKVTATIPV--G---NTPTGVAVDPD-GNKVYVTNSD-----------------DNTVSVIDTS  190 (381)
T ss_pred             ecccCCceEEEEeCCCCeEEEEEec--C---CCcceEEECCC-CCeEEEEecC-----------------CCeEEEEeCC
Confidence            874   3389999998876654221  1   24589999995 65 9998854                 5678889877


Q ss_pred             CCceEE-----eecCCCCcceeEEecCCCEEEEEEcCC--CeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEE
Q 019290          190 KKNVTV-----MYNGLSFPNGVALSNNNSFLLLAESAT--LKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWI  262 (343)
Q Consensus       190 ~~~~~~-----~~~~~~~~~~i~~~~d~~~lyv~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi  262 (343)
                      +..+.+     ....+..|.++++++++..+|+++...  +.+.+++...... .......... .|.++..+++|+.+.
T Consensus       191 ~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v-~~~~~~~~~~-~~~~v~~~p~g~~~y  268 (381)
T COG3391         191 GNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNV-TATDLPVGSG-APRGVAVDPAGKAAY  268 (381)
T ss_pred             CcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceE-EEeccccccC-CCCceeECCCCCEEE
Confidence            655543     233456789999999999999998876  5888888664221 1110111122 588999999997665


Q ss_pred             Eecc
Q 019290          263 AMNS  266 (343)
Q Consensus       263 ~~~~  266 (343)
                      ..+.
T Consensus       269 v~~~  272 (381)
T COG3391         269 VANS  272 (381)
T ss_pred             EEec
Confidence            5544

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.88  E-value=1.1e-05  Score=72.79  Aligned_cols=256  Identities=13%  Similarity=0.096  Sum_probs=138.1

Q ss_pred             ccccccccCCCCCCCceEEEcCCCCeeEEEe----------cCCEEEEEEcCCCCeE-EeeecCCCccccccCCCCCccc
Q 019290           23 SKSYQQLQLPGVVGPESLAFDCNGEGPYVGV----------SDGRILKWKAANSGWT-EFATTAPHRAREICDGSTNTTL   91 (343)
Q Consensus        23 ~~~~~~~~~~~~~~p~~l~~d~~g~~l~~~~----------~~g~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~   91 (343)
                      .+.+..++.+.  .|+.+ +++||+.+|++.          ..+.|-.+|..+.+.. ++.. +..+            .
T Consensus        37 ~~v~g~i~~G~--~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~-p~~p------------~  100 (352)
T TIGR02658        37 GRVLGMTDGGF--LPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIEL-PEGP------------R  100 (352)
T ss_pred             CEEEEEEEccC--CCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEcc-CCCc------------h
Confidence            44455666554  78886 999999888654          4678999999886543 2221 0000            0


Q ss_pred             CCCcCCeeeEEEeCCCCeEEEEeCC--CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCccccccc
Q 019290           92 EPLCGRPLGIKFNPVTCDLYIADAY--FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQ  169 (343)
Q Consensus        92 ~~~~~~p~gi~~~~~~~~l~v~~~~--~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~  169 (343)
                      ......+..++++++++.|||++..  +.+..+|.+++++..-.....      +..+....++..+...-.+       
T Consensus       101 ~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~------~~~vy~t~e~~~~~~~~Dg-------  167 (352)
T TIGR02658       101 FLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD------CYHIFPTANDTFFMHCRDG-------  167 (352)
T ss_pred             hhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC------CcEEEEecCCccEEEeecC-------
Confidence            0113346689999966789999743  559999999988765333211      1222222211111110000       


Q ss_pred             ceeeeeecCCCceEEEEeCCCCceE-----Eeec--C--CCCcceeEEec-CCCEEEEEEcCCCeEEEEEccCcccc--c
Q 019290          170 YFMSIATGDRSGRLLKYDPLKKNVT-----VMYN--G--LSFPNGVALSN-NNSFLLLAESATLKILRFWLQGERTT--Y  237 (343)
Q Consensus       170 ~~~~~~~~~~~~~v~~~d~~~~~~~-----~~~~--~--~~~~~~i~~~~-d~~~lyv~~~~~~~i~~~~~~~~~~~--~  237 (343)
                                .-..+.++.+ |+..     .+..  .  +..|   .+.+ +++.+|++..  +.|+.+|+.++...  .
T Consensus       168 ----------~~~~v~~d~~-g~~~~~~~~vf~~~~~~v~~rP---~~~~~dg~~~~vs~e--G~V~~id~~~~~~~~~~  231 (352)
T TIGR02658       168 ----------SLAKVGYGTK-GNPKIKPTEVFHPEDEYLINHP---AYSNKSGRLVWPTYT--GKIFQIDLSSGDAKFLP  231 (352)
T ss_pred             ----------ceEEEEecCC-CceEEeeeeeecCCccccccCC---ceEcCCCcEEEEecC--CeEEEEecCCCcceecc
Confidence                      0011112211 1111     0000  0  1233   3345 7777777653  99999997654320  1


Q ss_pred             cceeeecC----CCCCCc---eeeCCCC-CEEEEeccCCCccccccccccccccCCCcc--cCCCeEEEECC-CCCEEEE
Q 019290          238 TPQLFAEM----PRFPDN---IKSDSKG-EFWIAMNSARGKIESNKKTAFCEETAKPWF--LRDPVGVKFDV-NGNVVDV  306 (343)
Q Consensus       238 ~~~~~~~~----~~~p~~---i~~d~~G-~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~d~-~g~~~~~  306 (343)
                      ....+...    .-.|.+   ++++++| ++|++++. +.                .|.  .+.+.|..+|. .++.+..
T Consensus       232 ~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~-~~----------------~~thk~~~~~V~ViD~~t~kvi~~  294 (352)
T TIGR02658       232 AIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQ-RA----------------KWTHKTASRFLFVVDAKTGKRLRK  294 (352)
T ss_pred             eeeeccccccccccCCCcceeEEEcCCCCEEEEEecC-Cc----------------cccccCCCCEEEEEECCCCeEEEE
Confidence            11222111    114556   8889876 78997654 11                011  22357889997 4666776


Q ss_pred             eeCCCCCccCCceeEEEeCC-EEEEecCCCCeEEEEcC
Q 019290          307 LDGNEGNTLNSVSEVQEYGE-YLYTGSSVQPYVVVIKA  343 (343)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~g-~l~i~~~~~~~i~~~~~  343 (343)
                      +.....  ...+ .+..++. .||+++..++.|.++|.
T Consensus       295 i~vG~~--~~~i-avS~Dgkp~lyvtn~~s~~VsViD~  329 (352)
T TIGR02658       295 IELGHE--IDSI-NVSQDAKPLLYALSTGDKTLYIFDA  329 (352)
T ss_pred             EeCCCc--eeeE-EECCCCCeEEEEeCCCCCcEEEEEC
Confidence            654221  1111 1233456 78888888999999874

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=98.88  E-value=7.3e-06  Score=71.13  Aligned_cols=230  Identities=16%  Similarity=0.163  Sum_probs=139.6

Q ss_pred             ceEEEcCCCCeeEEEecCCEEEEEEcCCCC-eEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC-
Q 019290           38 ESLAFDCNGEGPYVGVSDGRILKWKAANSG-WTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA-  115 (343)
Q Consensus        38 ~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~-  115 (343)
                      ..+.+.++++.++++..++.+..|+..+++ ...+.                    .....+..+.+.+ ++.++++.. 
T Consensus        55 ~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~--------------------~~~~~i~~~~~~~-~~~~~~~~~~  113 (289)
T cd00200          55 RDVAASADGTYLASGSSDKTIRLWDLETGECVRTLT--------------------GHTSYVSSVAFSP-DGRILSSSSR  113 (289)
T ss_pred             eEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEe--------------------ccCCcEEEEEEcC-CCCEEEEecC
Confidence            488899999878888889999999987642 22221                    1122456788887 566666644 


Q ss_pred             CCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceE-
Q 019290          116 YFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVT-  194 (343)
Q Consensus       116 ~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-  194 (343)
                      ...+..+|.++++........    ...+..+.+++ ++.++++...                 .+.|..||..+++.. 
T Consensus       114 ~~~i~~~~~~~~~~~~~~~~~----~~~i~~~~~~~-~~~~l~~~~~-----------------~~~i~i~d~~~~~~~~  171 (289)
T cd00200         114 DKTIKVWDVETGKCLTTLRGH----TDWVNSVAFSP-DGTFVASSSQ-----------------DGTIKLWDLRTGKCVA  171 (289)
T ss_pred             CCeEEEEECCCcEEEEEeccC----CCcEEEEEEcC-cCCEEEEEcC-----------------CCcEEEEEccccccce
Confidence            345899998866544332211    13477889998 4776664432                 456888887655433 


Q ss_pred             EeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEeccCCCccccc
Q 019290          195 VMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNSARGKIESN  274 (343)
Q Consensus       195 ~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~~~~~~~~~~  274 (343)
                      .+.........++++++++.++++.. .+.|..|++.....   ...+.........+..++++.++++...        
T Consensus       172 ~~~~~~~~i~~~~~~~~~~~l~~~~~-~~~i~i~d~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~--------  239 (289)
T cd00200         172 TLTGHTGEVNSVAFSPDGEKLLSSSS-DGTIKLWDLSTGKC---LGTLRGHENGVNSVAFSPDGYLLASGSE--------  239 (289)
T ss_pred             eEecCccccceEEECCCcCEEEEecC-CCcEEEEECCCCce---ecchhhcCCceEEEEEcCCCcEEEEEcC--------
Confidence            22323335778899999877777654 78999999864211   1122112223556778888888887763        


Q ss_pred             cccccccccCCCcccCCCeEEEECCC-CCEEEEeeCCCCCccCCceeEEEe-CCEEEEecCCCCeEEEEc
Q 019290          275 KKTAFCEETAKPWFLRDPVGVKFDVN-GNVVDVLDGNEGNTLNSVSEVQEY-GEYLYTGSSVQPYVVVIK  342 (343)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~~~~i~~~~  342 (343)
                                      .+.+..++.+ ++....+....    ..+..+... ++.++++......+.+++
T Consensus       240 ----------------~~~i~i~~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         240 ----------------DGTIRVWDLRTGECVQTLSGHT----NSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             ----------------CCcEEEEEcCCceeEEEccccC----CcEEEEEECCCCCEEEEecCCCeEEecC
Confidence                            2466777764 55555544221    234444433 445555555555666553

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.84  E-value=3.8e-06  Score=79.51  Aligned_cols=206  Identities=13%  Similarity=0.134  Sum_probs=122.1

Q ss_pred             ceEEEcCCCCeeE-EEecC--CEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEe
Q 019290           38 ESLAFDCNGEGPY-VGVSD--GRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIAD  114 (343)
Q Consensus        38 ~~l~~d~~g~~l~-~~~~~--g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~  114 (343)
                      .+..++|||+.++ +...+  ..|+.+|..+++...+...                    .+......+++++..|+++.
T Consensus       221 ~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~--------------------~g~~~~~~wSPDG~~La~~~  280 (448)
T PRK04792        221 MSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSF--------------------PGINGAPRFSPDGKKLALVL  280 (448)
T ss_pred             cCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCC--------------------CCCcCCeeECCCCCEEEEEE
Confidence            3678899998554 44333  3699999887765544210                    01112456777555676653


Q ss_pred             CCC---eEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCe-EEEEeCCcccccccceeeeeecCCCceEEEEeCCC
Q 019290          115 AYF---GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGI-VYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLK  190 (343)
Q Consensus       115 ~~~---gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~  190 (343)
                      ...   .|+.+|.++++.+.+....     .......+.+ ||+ ++++...               .....||++|.++
T Consensus       281 ~~~g~~~Iy~~dl~tg~~~~lt~~~-----~~~~~p~wSp-DG~~I~f~s~~---------------~g~~~Iy~~dl~~  339 (448)
T PRK04792        281 SKDGQPEIYVVDIATKALTRITRHR-----AIDTEPSWHP-DGKSLIFTSER---------------GGKPQIYRVNLAS  339 (448)
T ss_pred             eCCCCeEEEEEECCCCCeEECccCC-----CCccceEECC-CCCEEEEEECC---------------CCCceEEEEECCC
Confidence            333   3999999988877664321     1234566777 454 5554321               1134699999988


Q ss_pred             CceEEeecCCCCcceeEEecCCCEEEEEEcCCC--eEEEEEccCccccccceeeecCCCCCCceeeCCCCC-EEEEeccC
Q 019290          191 KNVTVMYNGLSFPNGVALSNNNSFLLLAESATL--KILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGE-FWIAMNSA  267 (343)
Q Consensus       191 ~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-lwi~~~~~  267 (343)
                      ++.+.+..........++++||+.++++....+  .|+++++++    +..+.+... .......++++|+ |+++... 
T Consensus       340 g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~----g~~~~lt~~-~~d~~ps~spdG~~I~~~~~~-  413 (448)
T PRK04792        340 GKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLET----GAMQVLTST-RLDESPSVAPNGTMVIYSTTY-  413 (448)
T ss_pred             CCEEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCC----CCeEEccCC-CCCCCceECCCCCEEEEEEec-
Confidence            887765433333345688999999988765443  677788765    333333221 1122346778885 4444443 


Q ss_pred             CCccccccccccccccCCCcccCCCeEEEECCCCCEEEEeeCCC
Q 019290          268 RGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNE  311 (343)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~  311 (343)
                      +.                     ...++.++.+|+....+..+.
T Consensus       414 ~g---------------------~~~l~~~~~~G~~~~~l~~~~  436 (448)
T PRK04792        414 QG---------------------KQVLAAVSIDGRFKARLPAGQ  436 (448)
T ss_pred             CC---------------------ceEEEEEECCCCceEECcCCC
Confidence            22                     125777888888766665443

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=98.83  E-value=2.1e-05  Score=67.73  Aligned_cols=238  Identities=11%  Similarity=0.032  Sum_probs=145.0

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      .+.+|.++.+|..+.+...+..+..||-.++.......                   .....+.-+.+..+...+.-+.+
T Consensus        16 ~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~-------------------skkyG~~~~~Fth~~~~~i~sSt   76 (311)
T KOG1446|consen   16 KINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTIN-------------------SKKYGVDLACFTHHSNTVIHSST   76 (311)
T ss_pred             ceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEee-------------------cccccccEEEEecCCceEEEccC
Confidence            68999999999988887888889999987665443221                   22223444555544566655543


Q ss_pred             C--CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCce
Q 019290          116 Y--FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNV  193 (343)
Q Consensus       116 ~--~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~  193 (343)
                      .  .-|..+++.+.+..+......    ..+++|.+.|. +..+++.+-                 ...|..||....+.
T Consensus        77 k~d~tIryLsl~dNkylRYF~GH~----~~V~sL~~sP~-~d~FlS~S~-----------------D~tvrLWDlR~~~c  134 (311)
T KOG1446|consen   77 KEDDTIRYLSLHDNKYLRYFPGHK----KRVNSLSVSPK-DDTFLSSSL-----------------DKTVRLWDLRVKKC  134 (311)
T ss_pred             CCCCceEEEEeecCceEEEcCCCC----ceEEEEEecCC-CCeEEeccc-----------------CCeEEeeEecCCCC
Confidence            2  348888888777666544332    45899999995 788886653                 34677788765544


Q ss_pred             EEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecC-C--CCCCceeeCCCCCE-EEEeccCCC
Q 019290          194 TVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEM-P--RFPDNIKSDSKGEF-WIAMNSARG  269 (343)
Q Consensus       194 ~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~--~~p~~i~~d~~G~l-wi~~~~~~~  269 (343)
                      ..+. .+..+...|++|.|- ++++...++.|-.||+..=.+ +.+..+.-. +  ..-..|.+.++|+. .+++..   
T Consensus       135 qg~l-~~~~~pi~AfDp~GL-ifA~~~~~~~IkLyD~Rs~dk-gPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~---  208 (311)
T KOG1446|consen  135 QGLL-NLSGRPIAAFDPEGL-IFALANGSELIKLYDLRSFDK-GPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNA---  208 (311)
T ss_pred             ceEE-ecCCCcceeECCCCc-EEEEecCCCeEEEEEecccCC-CCceeEccCCCCccceeeeEEcCCCCEEEEEeCC---
Confidence            3322 334566778888773 444455555888898763222 333343221 1  12345788999964 555544   


Q ss_pred             ccccccccccccccCCCcccCCCeEEEECC-CCCEEEEeeCCCCCccCCceeEEEeCCEEEEecCCCCeEEEEc
Q 019290          270 KIESNKKTAFCEETAKPWFLRDPVGVKFDV-NGNVVDVLDGNEGNTLNSVSEVQEYGEYLYTGSSVQPYVVVIK  342 (343)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~~~~i~~~~  342 (343)
                                            +-++.+|. +|.+...+.............+..-+++..+++....+|.+++
T Consensus       209 ----------------------s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~  260 (311)
T KOG1446|consen  209 ----------------------SFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWN  260 (311)
T ss_pred             ----------------------CcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEE
Confidence                                  35667776 8887777654332111122222223566666666666666654

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=98.82  E-value=2.5e-07  Score=85.22  Aligned_cols=141  Identities=18%  Similarity=0.286  Sum_probs=93.9

Q ss_pred             CcCCeeeEEEeCCCCeEEEEeCC-------------CeEEEEeCC--CCeE---EEcccccCCCCccCcceeEEeCCCCe
Q 019290           94 LCGRPLGIKFNPVTCDLYIADAY-------------FGLMVVGPN--GGQA---QQLASSAGGIPFRFTNDLDIDPNTGI  155 (343)
Q Consensus        94 ~~~~p~gi~~~~~~~~l~v~~~~-------------~gi~~~d~~--~~~~---~~~~~~~~~~~~~~~~~i~~d~~dg~  155 (343)
                      ....|.+|++++ +|+|||++..             ..|++++..  .|+.   +.++..     ...++++++.+ +| 
T Consensus        12 ~~~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~-----l~~p~Gi~~~~-~G-   83 (367)
T TIGR02604        12 LLRNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEE-----LSMVTGLAVAV-GG-   83 (367)
T ss_pred             ccCCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecC-----CCCccceeEec-CC-
Confidence            356789999998 8999999631             257777542  2332   333221     34689999998 57 


Q ss_pred             EEEEeCCcccccccceeeeeecCCCceEEEE-eCCC-----CceEEeecCC--------CCcceeEEecCCCEEEEEEcC
Q 019290          156 VYFTDSSIYFQRRQYFMSIATGDRSGRLLKY-DPLK-----KNVTVMYNGL--------SFPNGVALSNNNSFLLLAESA  221 (343)
Q Consensus       156 l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~-d~~~-----~~~~~~~~~~--------~~~~~i~~~~d~~~lyv~~~~  221 (343)
                      +|+++..                   .|+++ |.+.     ++.+.+..++        ..++++++.+||. ||++...
T Consensus        84 lyV~~~~-------------------~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~-LYv~~G~  143 (367)
T TIGR02604        84 VYVATPP-------------------DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW-LYFNHGN  143 (367)
T ss_pred             EEEeCCC-------------------eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC-EEEeccc
Confidence            9997643                   57777 3321     1334443322        2377899999985 8886541


Q ss_pred             -------------------CCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEecc
Q 019290          222 -------------------TLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNS  266 (343)
Q Consensus       222 -------------------~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~~  266 (343)
                                         .+.|+++++++    ++.++++..-.-|.++++|++|++|++++.
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg----~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn~  203 (367)
T TIGR02604       144 TLASKVTRPGTSDESRQGLGGGLFRYNPDG----GKLRVVAHGFQNPYGHSVDSWGDVFFCDND  203 (367)
T ss_pred             CCCceeccCCCccCcccccCceEEEEecCC----CeEEEEecCcCCCccceECCCCCEEEEccC
Confidence                               25799999877    455666542233889999999999999875

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PRK02889 tolB translocation protein TolB; Provisional

Probab=98.79  E-value=8.1e-06  Score=76.89  Aligned_cols=207  Identities=14%  Similarity=0.140  Sum_probs=121.6

Q ss_pred             ceEEEcCCCCeeEEEe-c--CCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEe
Q 019290           38 ESLAFDCNGEGPYVGV-S--DGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIAD  114 (343)
Q Consensus        38 ~~l~~d~~g~~l~~~~-~--~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~  114 (343)
                      .+.+++|||+.+++.. .  ...|+.+|..+++...+..                    ..+......++++++.|+++.
T Consensus       199 ~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~--------------------~~g~~~~~~~SPDG~~la~~~  258 (427)
T PRK02889        199 ISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVAN--------------------FKGSNSAPAWSPDGRTLAVAL  258 (427)
T ss_pred             ccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeec--------------------CCCCccceEECCCCCEEEEEE
Confidence            4678999998665433 2  2469999998876655431                    011223466787455676653


Q ss_pred             CC---CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCe-EEEEeCCcccccccceeeeeecCCCceEEEEeCCC
Q 019290          115 AY---FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGI-VYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLK  190 (343)
Q Consensus       115 ~~---~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~  190 (343)
                      ..   ..|+.+|.+++..+.+....     .......+.+ ||+ ++++...               .....||.++.++
T Consensus       259 ~~~g~~~Iy~~d~~~~~~~~lt~~~-----~~~~~~~wSp-DG~~l~f~s~~---------------~g~~~Iy~~~~~~  317 (427)
T PRK02889        259 SRDGNSQIYTVNADGSGLRRLTQSS-----GIDTEPFFSP-DGRSIYFTSDR---------------GGAPQIYRMPASG  317 (427)
T ss_pred             ccCCCceEEEEECCCCCcEECCCCC-----CCCcCeEEcC-CCCEEEEEecC---------------CCCcEEEEEECCC
Confidence            33   34999998877766653211     1223456788 465 5543221               1134689998777


Q ss_pred             CceEEeecCCCCcceeEEecCCCEEEEEEcCC--CeEEEEEccCccccccceeeecCCCCCCceeeCCCCC-EEEEeccC
Q 019290          191 KNVTVMYNGLSFPNGVALSNNNSFLLLAESAT--LKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGE-FWIAMNSA  267 (343)
Q Consensus       191 ~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-lwi~~~~~  267 (343)
                      ++.+.+..........+++|||+.++++...+  ..|+++++.+    +..+.+... .........++|+ |+++... 
T Consensus       318 g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~----g~~~~lt~~-~~~~~p~~spdg~~l~~~~~~-  391 (427)
T PRK02889        318 GAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLAT----GQVTALTDT-TRDESPSFAPNGRYILYATQQ-  391 (427)
T ss_pred             CceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCC----CCeEEccCC-CCccCceECCCCCEEEEEEec-
Confidence            76655543222234567999999887765433  2688898775    333333322 1234567888886 4444443 


Q ss_pred             CCccccccccccccccCCCcccCCCeEEEECCCCCEEEEeeCCCC
Q 019290          268 RGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEG  312 (343)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~~  312 (343)
                      +.                     ...++.++.+|+....+..+.+
T Consensus       392 ~g---------------------~~~l~~~~~~g~~~~~l~~~~g  415 (427)
T PRK02889        392 GG---------------------RSVLAAVSSDGRIKQRLSVQGG  415 (427)
T ss_pred             CC---------------------CEEEEEEECCCCceEEeecCCC
Confidence            22                     1257778888877666654444

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=98.79  E-value=3.1e-05  Score=67.10  Aligned_cols=185  Identities=14%  Similarity=0.157  Sum_probs=112.3

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      ...++++.++++.++++..++.+..|+..+++......                   ........+.+.+.++.++++..
T Consensus        11 ~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~-------------------~~~~~i~~~~~~~~~~~l~~~~~   71 (289)
T cd00200          11 GVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLK-------------------GHTGPVRDVAASADGTYLASGSS   71 (289)
T ss_pred             CEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEe-------------------cCCcceeEEEECCCCCEEEEEcC
Confidence            46789999999978888889999999887654221110                   11122347778874446777644


Q ss_pred             CCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEE
Q 019290          116 YFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTV  195 (343)
Q Consensus       116 ~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~  195 (343)
                      ...+..++.++++........    ...+..+.+.+ ++.++++...                 .+.|..||..+++...
T Consensus        72 ~~~i~i~~~~~~~~~~~~~~~----~~~i~~~~~~~-~~~~~~~~~~-----------------~~~i~~~~~~~~~~~~  129 (289)
T cd00200          72 DKTIRLWDLETGECVRTLTGH----TSYVSSVAFSP-DGRILSSSSR-----------------DKTIKVWDVETGKCLT  129 (289)
T ss_pred             CCeEEEEEcCcccceEEEecc----CCcEEEEEEcC-CCCEEEEecC-----------------CCeEEEEECCCcEEEE
Confidence            445888998865322221111    12467888888 4777775542                 4578888877555433


Q ss_pred             eec-CCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCC-EEEEec
Q 019290          196 MYN-GLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGE-FWIAMN  265 (343)
Q Consensus       196 ~~~-~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-lwi~~~  265 (343)
                      ... .......+++++++..++. ...++.|..|++.....   ...+.........+..+++|+ ++++..
T Consensus       130 ~~~~~~~~i~~~~~~~~~~~l~~-~~~~~~i~i~d~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l~~~~~  197 (289)
T cd00200         130 TLRGHTDWVNSVAFSPDGTFVAS-SSQDGTIKLWDLRTGKC---VATLTGHTGEVNSVAFSPDGEKLLSSSS  197 (289)
T ss_pred             EeccCCCcEEEEEEcCcCCEEEE-EcCCCcEEEEEcccccc---ceeEecCccccceEEECCCcCEEEEecC
Confidence            222 3345678889888765544 44578899999864221   122222222356678888884 555543

>PRK04922 tolB translocation protein TolB; Provisional

Probab=98.79  E-value=6.2e-06  Score=77.86  Aligned_cols=206  Identities=14%  Similarity=0.099  Sum_probs=122.3

Q ss_pred             CceEEEcCCCCeeEEEe-c--CCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEE
Q 019290           37 PESLAFDCNGEGPYVGV-S--DGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIA  113 (343)
Q Consensus        37 p~~l~~d~~g~~l~~~~-~--~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~  113 (343)
                      ..+.++++||+.+++.. .  ...|+.+|..+++...+...                    .+......+++++..|+++
T Consensus       206 v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~--------------------~g~~~~~~~SpDG~~l~~~  265 (433)
T PRK04922        206 ILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASF--------------------RGINGAPSFSPDGRRLALT  265 (433)
T ss_pred             cccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccC--------------------CCCccCceECCCCCEEEEE
Confidence            34667889998555433 2  34699999987766554311                    1112245677745567655


Q ss_pred             eCCC---eEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCe-EEEEeCCcccccccceeeeeecCCCceEEEEeCC
Q 019290          114 DAYF---GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGI-VYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPL  189 (343)
Q Consensus       114 ~~~~---gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~  189 (343)
                      ....   .|+.+|.++++.+.+....     .......+.+ ||+ ++++...               .+...||.++.+
T Consensus       266 ~s~~g~~~Iy~~d~~~g~~~~lt~~~-----~~~~~~~~sp-DG~~l~f~sd~---------------~g~~~iy~~dl~  324 (433)
T PRK04922        266 LSRDGNPEIYVMDLGSRQLTRLTNHF-----GIDTEPTWAP-DGKSIYFTSDR---------------GGRPQIYRVAAS  324 (433)
T ss_pred             EeCCCCceEEEEECCCCCeEECccCC-----CCccceEECC-CCCEEEEEECC---------------CCCceEEEEECC
Confidence            3322   4999999988877653221     1124567888 465 5543221               112469999987


Q ss_pred             CCceEEeecCCCCcceeEEecCCCEEEEEEcCC--CeEEEEEccCccccccceeeecCCCCCCceeeCCCCC-EEEEecc
Q 019290          190 KKNVTVMYNGLSFPNGVALSNNNSFLLLAESAT--LKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGE-FWIAMNS  266 (343)
Q Consensus       190 ~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-lwi~~~~  266 (343)
                      +++.+.+..........++++||+.++++...+  ..|+.+++++    +..+.+.... .......+++|+ ++++...
T Consensus       325 ~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~----g~~~~Lt~~~-~~~~p~~spdG~~i~~~s~~  399 (433)
T PRK04922        325 GGSAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLST----GSVRTLTPGS-LDESPSFAPNGSMVLYATRE  399 (433)
T ss_pred             CCCeEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCC----CCeEECCCCC-CCCCceECCCCCEEEEEEec
Confidence            777766543333344678999999988875433  3688898865    3333333221 234457788996 4444433


Q ss_pred             CCCccccccccccccccCCCcccCCCeEEEECCCCCEEEEeeCC
Q 019290          267 ARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGN  310 (343)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~  310 (343)
                       +.                     ...++.++.+|.....+..+
T Consensus       400 -~g---------------------~~~L~~~~~~g~~~~~l~~~  421 (433)
T PRK04922        400 -GG---------------------RGVLAAVSTDGRVRQRLVSA  421 (433)
T ss_pred             -CC---------------------ceEEEEEECCCCceEEcccC
Confidence             22                     23688888888766655443

>PRK05137 tolB translocation protein TolB; Provisional

Probab=98.79  E-value=1.4e-05  Score=75.59  Aligned_cols=139  Identities=12%  Similarity=0.122  Sum_probs=84.1

Q ss_pred             eeeEEEeCCCCeEEEEeCC---CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCe-EEEEeCCcccccccceee
Q 019290           98 PLGIKFNPVTCDLYIADAY---FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGI-VYFTDSSIYFQRRQYFMS  173 (343)
Q Consensus        98 p~gi~~~~~~~~l~v~~~~---~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~-l~v~~~~~~~~~~~~~~~  173 (343)
                      .....++++++.|.+....   ..|+.+|+++++.+.+....     ......++.| ||+ +.++...           
T Consensus       204 v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~-----g~~~~~~~SP-DG~~la~~~~~-----------  266 (435)
T PRK05137        204 VLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFP-----GMTFAPRFSP-DGRKVVMSLSQ-----------  266 (435)
T ss_pred             eEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCC-----CcccCcEECC-CCCEEEEEEec-----------
Confidence            3456777745556555332   34999999988776653221     1234567888 565 5554322           


Q ss_pred             eeecCCCceEEEEeCCCCceEEeecCCCCcceeEEecCCCEEEEEEcCC--CeEEEEEccCccccccceeeecCCCCCCc
Q 019290          174 IATGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESAT--LKILRFWLQGERTTYTPQLFAEMPRFPDN  251 (343)
Q Consensus       174 ~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~p~~  251 (343)
                          .....||.+|.++++.+.+...........++|||+.++++....  ..||++++++    ++.+.+....+....
T Consensus       267 ----~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g----~~~~~lt~~~~~~~~  338 (435)
T PRK05137        267 ----GGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADG----SNPRRISFGGGRYST  338 (435)
T ss_pred             ----CCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCC----CCeEEeecCCCcccC
Confidence                113469999998888776654433345678899999887765433  4799998776    333333322222234


Q ss_pred             eeeCCCCCEE
Q 019290          252 IKSDSKGEFW  261 (343)
Q Consensus       252 i~~d~~G~lw  261 (343)
                      ....++|+..
T Consensus       339 ~~~SpdG~~i  348 (435)
T PRK05137        339 PVWSPRGDLI  348 (435)
T ss_pred             eEECCCCCEE
Confidence            5677888543

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.76  E-value=2.7e-06  Score=78.14  Aligned_cols=171  Identities=16%  Similarity=0.185  Sum_probs=104.2

Q ss_pred             ccccccccCCCCCCCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeE-EeeecCCCccccccCCCCCcccCCCcCCeeeE
Q 019290           23 SKSYQQLQLPGVVGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWT-EFATTAPHRAREICDGSTNTTLEPLCGRPLGI  101 (343)
Q Consensus        23 ~~~~~~~~~~~~~~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi  101 (343)
                      .+.+..++.++.. +.++++.+||+.+|+...+|.|..+|..+.+.. .+                     .....|.++
T Consensus        26 ~~~~~~i~~~~~~-h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i---------------------~~G~~~~~i   83 (369)
T PF02239_consen   26 NKVVARIPTGGAP-HAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATI---------------------KVGGNPRGI   83 (369)
T ss_dssp             -SEEEEEE-STTE-EEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEE---------------------E-SSEEEEE
T ss_pred             CeEEEEEcCCCCc-eeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEE---------------------ecCCCcceE
Confidence            4556777776422 566889999998998888999999999886533 32                     223458899


Q ss_pred             EEeCCCCeEEEEeCC-CeEEEEeCCCCeEEEccccc---CCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeec
Q 019290          102 KFNPVTCDLYIADAY-FGLMVVGPNGGQAQQLASSA---GGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATG  177 (343)
Q Consensus       102 ~~~~~~~~l~v~~~~-~gi~~~d~~~~~~~~~~~~~---~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~  177 (343)
                      +++++++.+++++.. ..+..+|.++.+........   ...+...+..+...+ .+..|+.+..               
T Consensus        84 ~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~-~~~~fVv~lk---------------  147 (369)
T PF02239_consen   84 AVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASP-GRPEFVVNLK---------------  147 (369)
T ss_dssp             EE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-S-SSSEEEEEET---------------
T ss_pred             EEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecC-CCCEEEEEEc---------------
Confidence            999866678888643 55999999876544322211   111223445666666 3555554321               


Q ss_pred             CCCceEEEEeCCCCce--EEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290          178 DRSGRLLKYDPLKKNV--TVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQG  232 (343)
Q Consensus       178 ~~~~~v~~~d~~~~~~--~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~  232 (343)
                       ..+.|+.+|....+.  .....-...+.+..+++++++++++....+.|-.+|...
T Consensus       148 -d~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~  203 (369)
T PF02239_consen  148 -DTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKT  203 (369)
T ss_dssp             -TTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTT
T ss_pred             -cCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeecc
Confidence             156899888653321  123334567889999999999999888889999999765

...

>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]

Probab=98.75  E-value=4.1e-06  Score=83.76  Aligned_cols=239  Identities=19%  Similarity=0.260  Sum_probs=142.5

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      .|-.++..+||. +|++..+- |.|+-+++...+.+....                 ........|+++|.+|.||+++.
T Consensus       366 aPvala~a~DGS-l~VGDfNy-IRRI~~dg~v~tIl~L~~-----------------t~~sh~Yy~AvsPvdgtlyvSdp  426 (1899)
T KOG4659|consen  366 APVALAYAPDGS-LIVGDFNY-IRRISQDGQVSTILTLGL-----------------TDTSHSYYIAVSPVDGTLYVSDP  426 (1899)
T ss_pred             ceeeEEEcCCCc-EEEccchh-eeeecCCCceEEEEEecC-----------------CCccceeEEEecCcCceEEecCC
Confidence            478899999999 88876655 777776664433332211                 12233467999999999999987


Q ss_pred             CCe-EEEEeC-CC----CeEEEcccc----------------cCCCCccCcceeEEeCCCCeEEEEeCCcccccccceee
Q 019290          116 YFG-LMVVGP-NG----GQAQQLASS----------------AGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMS  173 (343)
Q Consensus       116 ~~g-i~~~d~-~~----~~~~~~~~~----------------~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~  173 (343)
                      ... |+++-. +.    ..+..++..                ...+.+.+|.+|++|+ +|.||++|..           
T Consensus       427 ~s~qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~PkGIa~dk-~g~lYfaD~t-----------  494 (1899)
T KOG4659|consen  427 LSKQVWRVSSLEPQDSRNNYEVVAGDGEVCLPADESCGDGALAQDAQLIFPKGIAFDK-MGNLYFADGT-----------  494 (1899)
T ss_pred             CcceEEEeccCCccccccCeeEEeccCcCccccccccCcchhcccceeccCCceeEcc-CCcEEEeccc-----------
Confidence            654 887732 11    112222210                1234567899999999 5999998865           


Q ss_pred             eeecCCCceEEEEeCCCCceEEee--------------------cCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCc
Q 019290          174 IATGDRSGRLLKYDPLKKNVTVMY--------------------NGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGE  233 (343)
Q Consensus       174 ~~~~~~~~~v~~~d~~~~~~~~~~--------------------~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~  233 (343)
                              .|-.+|.. |.++.+.                    -.+..|..++++|=.+.|||.++  +-|++++....
T Consensus       495 --------~IR~iD~~-giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld~--nvvlrit~~~r  563 (1899)
T KOG4659|consen  495 --------RIRVIDTT-GIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLDT--NVVLRITVVHR  563 (1899)
T ss_pred             --------EEEEeccC-ceEEEeccCCCCccCccccccccchhheeeecccceeecCCCCeEEEeec--ceEEEEccCcc
Confidence                    24444432 2222211                    12456889999997778999874  67888776542


Q ss_pred             ccc--ccceeeecCC---------------CCCCceeeCCCCCEEEEeccCCCccccccccccccccCCCcccCCCeEEE
Q 019290          234 RTT--YTPQLFAEMP---------------RFPDNIKSDSKGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVK  296 (343)
Q Consensus       234 ~~~--~~~~~~~~~~---------------~~p~~i~~d~~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  296 (343)
                      -.+  ++. .-+..+               -.+..|++.++|.|||+..+ +-++                    +.|..
T Consensus       564 V~Ii~GrP-~hC~~a~~t~~~skla~H~tl~~~r~Iavg~~G~lyvaEsD-~rri--------------------Nrvr~  621 (1899)
T KOG4659|consen  564 VRIILGRP-THCDLANATSSASKLADHRTLLIQRDIAVGTDGALYVAESD-GRRI--------------------NRVRK  621 (1899)
T ss_pred             EEEEcCCc-cccccCCCchhhhhhhhhhhhhhhhceeecCCceEEEEecc-chhh--------------------hheEE
Confidence            110  000 000011               12567889999999999887 3332                    36666


Q ss_pred             ECCCCCEEEEeeC---CCCC-------------------ccCCceeEEE-eCCEEEEecCCCCeEE
Q 019290          297 FDVNGNVVDVLDG---NEGN-------------------TLNSVSEVQE-YGEYLYTGSSVQPYVV  339 (343)
Q Consensus       297 ~d~~g~~~~~~~~---~~~~-------------------~~~~~~~~~~-~~g~l~i~~~~~~~i~  339 (343)
                      +..+| .+..++.   +..+                   ..+.++.+.. -+|.+||+.....+|.
T Consensus       622 ~~tdg-~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPdg~v~IAD~gN~rIr  686 (1899)
T KOG4659|consen  622 LSTDG-TISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPDGDVIIADSGNSRIR  686 (1899)
T ss_pred             eccCc-eEEEecCCCCCCCcccccCCccccccchhhhccccCCcceEEECCCCcEEEecCCchhhh
Confidence            66677 3333321   1111                   2233444333 3888999988876654

>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]

Probab=98.75  E-value=1.3e-06  Score=83.61  Aligned_cols=193  Identities=16%  Similarity=0.204  Sum_probs=132.1

Q ss_pred             CeeeEEEeCCCCeEEEEeCC-CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeee
Q 019290           97 RPLGIKFNPVTCDLYIADAY-FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIA  175 (343)
Q Consensus        97 ~p~gi~~~~~~~~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~  175 (343)
                      -+.||.||=.+..+|++|.. ..|.+-.+++++.+.+...    .+.++.+||+|....++|++|+...           
T Consensus      1026 IiVGidfDC~e~mvyWtDv~g~SI~rasL~G~Ep~ti~n~----~L~SPEGiAVDh~~Rn~ywtDS~lD----------- 1090 (1289)
T KOG1214|consen 1026 IIVGIDFDCRERMVYWTDVAGRSISRASLEGAEPETIVNS----GLISPEGIAVDHIRRNMYWTDSVLD----------- 1090 (1289)
T ss_pred             eeeeeecccccceEEEeecCCCccccccccCCCCceeecc----cCCCccceeeeeccceeeeeccccc-----------
Confidence            36789998767788888753 3477777776665554322    2457889999975467999987521           


Q ss_pred             ecCCCceEEEEeCCCCceEEeecCCCCcceeEEecCCCEEEEEEcC--CCeEEEEEccCccccccceeeec-CCCCCCce
Q 019290          176 TGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESA--TLKILRFWLQGERTTYTPQLFAE-MPRFPDNI  252 (343)
Q Consensus       176 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~--~~~i~~~~~~~~~~~~~~~~~~~-~~~~p~~i  252 (343)
                          .-.|..+|..- +...+..++..|.+|++++-++.|||++..  +-.|.+.+++|    .+.+++.+ .-++|+|+
T Consensus      1091 ----~IevA~LdG~~-rkvLf~tdLVNPR~iv~D~~rgnLYwtDWnRenPkIets~mDG----~NrRilin~DigLPNGL 1161 (1289)
T KOG1214|consen 1091 ----KIEVALLDGSE-RKVLFYTDLVNPRAIVVDPIRGNLYWTDWNRENPKIETSSMDG----ENRRILINTDIGLPNGL 1161 (1289)
T ss_pred             ----hhheeecCCce-eeEEEeecccCcceEEeecccCceeeccccccCCcceeeccCC----ccceEEeecccCCCCCc
Confidence                23355555331 122345788899999999999999999775  46788888887    55566665 55799999


Q ss_pred             eeCCCCC--EEEEeccCCCccccccccccccccCCCcccCCCeEEEECCCCCEEEEeeCCCCCccCCceeEEEeCCEEEE
Q 019290          253 KSDSKGE--FWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEGNTLNSVSEVQEYGEYLYT  330 (343)
Q Consensus       253 ~~d~~G~--lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i  330 (343)
                      .+|+..+  .|+-...                         +++-++.++|.-.+.+..  +  ...+..+..+..++|.
T Consensus      1162 tfdpfs~~LCWvDAGt-------------------------~rleC~~p~g~gRR~i~~--~--LqYPF~itsy~~~fY~ 1212 (1289)
T KOG1214|consen 1162 TFDPFSKLLCWVDAGT-------------------------KRLECTLPDGTGRRVIQN--N--LQYPFSITSYADHFYH 1212 (1289)
T ss_pred             eeCcccceeeEEecCC-------------------------cceeEecCCCCcchhhhh--c--ccCceeeeecccccee
Confidence            9999764  3665433                         477788887654333321  1  2344555556667999


Q ss_pred             ecCCCCeEEEEc
Q 019290          331 GSSVQPYVVVIK  342 (343)
Q Consensus       331 ~~~~~~~i~~~~  342 (343)
                      +.+..|+|.-++
T Consensus      1213 TDWk~n~vvsv~ 1224 (1289)
T KOG1214|consen 1213 TDWKRNGVVSVN 1224 (1289)
T ss_pred             eccccCceEEee
Confidence            999999887653

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.75  E-value=1.7e-05  Score=74.90  Aligned_cols=208  Identities=14%  Similarity=0.137  Sum_probs=122.3

Q ss_pred             ceEEEcCCCCee-EEEecC--CEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEe
Q 019290           38 ESLAFDCNGEGP-YVGVSD--GRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIAD  114 (343)
Q Consensus        38 ~~l~~d~~g~~l-~~~~~~--g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~  114 (343)
                      .+..+++||+.+ |+...+  ..|+.++..+++...+...                    .+......++++++.|+++.
T Consensus       202 ~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~--------------------~g~~~~~~~SpDG~~la~~~  261 (430)
T PRK00178        202 LSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNF--------------------EGLNGAPAWSPDGSKLAFVL  261 (430)
T ss_pred             eeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCC--------------------CCCcCCeEECCCCCEEEEEE
Confidence            567889999855 444333  4799999988766554210                    11122456777455676553


Q ss_pred             CCC---eEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCC
Q 019290          115 AYF---GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKK  191 (343)
Q Consensus       115 ~~~---gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~  191 (343)
                      ...   .|+.+|.++++.+.+....     .......+.+++..++++...               .+...||+++..++
T Consensus       262 ~~~g~~~Iy~~d~~~~~~~~lt~~~-----~~~~~~~~spDg~~i~f~s~~---------------~g~~~iy~~d~~~g  321 (430)
T PRK00178        262 SKDGNPEIYVMDLASRQLSRVTNHP-----AIDTEPFWGKDGRTLYFTSDR---------------GGKPQIYKVNVNGG  321 (430)
T ss_pred             ccCCCceEEEEECCCCCeEEcccCC-----CCcCCeEECCCCCEEEEEECC---------------CCCceEEEEECCCC
Confidence            332   4999999988877664211     112345677732346664322               11346999998888


Q ss_pred             ceEEeecCCCCcceeEEecCCCEEEEEEcCCC--eEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEE-EeccCC
Q 019290          192 NVTVMYNGLSFPNGVALSNNNSFLLLAESATL--KILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWI-AMNSAR  268 (343)
Q Consensus       192 ~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi-~~~~~~  268 (343)
                      +.+.+...........+++|++.++++....+  .|+++++++    +..+.+... .......++++|+..+ +... +
T Consensus       322 ~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~t----g~~~~lt~~-~~~~~p~~spdg~~i~~~~~~-~  395 (430)
T PRK00178        322 RAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQR----GSVRILTDT-SLDESPSVAPNGTMLIYATRQ-Q  395 (430)
T ss_pred             CEEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCC----CCEEEccCC-CCCCCceECCCCCEEEEEEec-C
Confidence            77665433333344678999999988765433  588888775    333333322 1223456788886444 4433 2


Q ss_pred             CccccccccccccccCCCcccCCCeEEEECCCCCEEEEeeCCCC
Q 019290          269 GKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEG  312 (343)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~~  312 (343)
                      .                     ...++.++.+|+....+..+.+
T Consensus       396 g---------------------~~~l~~~~~~g~~~~~l~~~~g  418 (430)
T PRK00178        396 G---------------------RGVLMLVSINGRVRLPLPTAQG  418 (430)
T ss_pred             C---------------------ceEEEEEECCCCceEECcCCCC
Confidence            2                     1367778888776655544433

>PRK03629 tolB translocation protein TolB; Provisional

Probab=98.73  E-value=1.8e-05  Score=74.61  Aligned_cols=206  Identities=16%  Similarity=0.088  Sum_probs=122.6

Q ss_pred             CceEEEcCCCCeeE-EEe--cCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEE
Q 019290           37 PESLAFDCNGEGPY-VGV--SDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIA  113 (343)
Q Consensus        37 p~~l~~d~~g~~l~-~~~--~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~  113 (343)
                      ..+.+++|||+.+. +..  ....|+.++..+++...+...                    .+......+++++..|+++
T Consensus       201 ~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~--------------------~~~~~~~~~SPDG~~La~~  260 (429)
T PRK03629        201 LMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASF--------------------PRHNGAPAFSPDGSKLAFA  260 (429)
T ss_pred             eeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCC--------------------CCCcCCeEECCCCCEEEEE
Confidence            35788999998554 432  234788898877765544210                    0112245788855567765


Q ss_pred             eCCC---eEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCe-EEEEeCCcccccccceeeeeecCCCceEEEEeCC
Q 019290          114 DAYF---GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGI-VYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPL  189 (343)
Q Consensus       114 ~~~~---gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~  189 (343)
                      ....   .|+.+|.++++.+.+....     .......+.| ||+ |+++-..               .....||++|.+
T Consensus       261 ~~~~g~~~I~~~d~~tg~~~~lt~~~-----~~~~~~~wSP-DG~~I~f~s~~---------------~g~~~Iy~~d~~  319 (429)
T PRK03629        261 LSKTGSLNLYVMDLASGQIRQVTDGR-----SNNTEPTWFP-DSQNLAYTSDQ---------------AGRPQVYKVNIN  319 (429)
T ss_pred             EcCCCCcEEEEEECCCCCEEEccCCC-----CCcCceEECC-CCCEEEEEeCC---------------CCCceEEEEECC
Confidence            3322   4999999988877664321     1245677888 465 5443221               013469999988


Q ss_pred             CCceEEeecCCCCcceeEEecCCCEEEEEEcCC--CeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEeccC
Q 019290          190 KKNVTVMYNGLSFPNGVALSNNNSFLLLAESAT--LKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNSA  267 (343)
Q Consensus       190 ~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~~~  267 (343)
                      +++.+.+..........+++|||+.++++...+  ..|+.+++++    ++.+.+... .......+.+||+..+.....
T Consensus       320 ~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~----g~~~~Lt~~-~~~~~p~~SpDG~~i~~~s~~  394 (429)
T PRK03629        320 GGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT----GGVQVLTDT-FLDETPSIAPNGTMVIYSSSQ  394 (429)
T ss_pred             CCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCC----CCeEEeCCC-CCCCCceECCCCCEEEEEEcC
Confidence            877766644333445678899999887765433  4588888765    333333321 112345678999754443332


Q ss_pred             CCccccccccccccccCCCcccCCCeEEEECCCCCEEEEeeC
Q 019290          268 RGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDG  309 (343)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~  309 (343)
                      +..                     ..++.++.+|+....+..
T Consensus       395 ~~~---------------------~~l~~~~~~G~~~~~l~~  415 (429)
T PRK03629        395 GMG---------------------SVLNLVSTDGRFKARLPA  415 (429)
T ss_pred             CCc---------------------eEEEEEECCCCCeEECcc
Confidence            221                     256677778876665543

>PRK05137 tolB translocation protein TolB; Provisional

Probab=98.69  E-value=2.1e-05  Score=74.26  Aligned_cols=207  Identities=11%  Similarity=0.096  Sum_probs=122.0

Q ss_pred             CceEEEcCCCCeeE-EEe--cCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEE
Q 019290           37 PESLAFDCNGEGPY-VGV--SDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIA  113 (343)
Q Consensus        37 p~~l~~d~~g~~l~-~~~--~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~  113 (343)
                      ..+..+.+||+.+. +..  .+..|+.+|..+++...+...                    .+......+++++..|+++
T Consensus       204 v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~--------------------~g~~~~~~~SPDG~~la~~  263 (435)
T PRK05137        204 VLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNF--------------------PGMTFAPRFSPDGRKVVMS  263 (435)
T ss_pred             eEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecC--------------------CCcccCcEECCCCCEEEEE
Confidence            45677899998554 443  245899999988766554311                    1122345677744566655


Q ss_pred             eCC---CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCe-EEEEeCCcccccccceeeeeecCCCceEEEEeCC
Q 019290          114 DAY---FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGI-VYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPL  189 (343)
Q Consensus       114 ~~~---~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~  189 (343)
                      ...   ..|+.+|.++++.+.+....     .......+.+ ||+ ++++...               .+...||++|.+
T Consensus       264 ~~~~g~~~Iy~~d~~~~~~~~Lt~~~-----~~~~~~~~sp-DG~~i~f~s~~---------------~g~~~Iy~~d~~  322 (435)
T PRK05137        264 LSQGGNTDIYTMDLRSGTTTRLTDSP-----AIDTSPSYSP-DGSQIVFESDR---------------SGSPQLYVMNAD  322 (435)
T ss_pred             EecCCCceEEEEECCCCceEEccCCC-----CccCceeEcC-CCCEEEEEECC---------------CCCCeEEEEECC
Confidence            332   34999999988877664321     1233467777 465 5554321               113469999988


Q ss_pred             CCceEEeecCCCCcceeEEecCCCEEEEEEcCC--CeEEEEEccCccccccceeeecCCCCCCceeeCCCCCE-EEEecc
Q 019290          190 KKNVTVMYNGLSFPNGVALSNNNSFLLLAESAT--LKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEF-WIAMNS  266 (343)
Q Consensus       190 ~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l-wi~~~~  266 (343)
                      +++.+.+...........++|||+.++++....  ..|+.+++++    +..+.+.. ........+++||+. +++...
T Consensus       323 g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~----~~~~~lt~-~~~~~~p~~spDG~~i~~~~~~  397 (435)
T PRK05137        323 GSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDG----SGERILTS-GFLVEGPTWAPNGRVIMFFRQT  397 (435)
T ss_pred             CCCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCC----CceEeccC-CCCCCCCeECCCCCEEEEEEcc
Confidence            777776654333345577999999988765433  4688888765    22233322 122456678889864 443332


Q ss_pred             CCCccccccccccccccCCCcccCCCeEEEECCCCCEEEEee
Q 019290          267 ARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLD  308 (343)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~  308 (343)
                      .+...                   ...++.+|.+|+....+.
T Consensus       398 ~~~~~-------------------~~~L~~~dl~g~~~~~l~  420 (435)
T PRK05137        398 PGSGG-------------------APKLYTVDLTGRNEREVP  420 (435)
T ss_pred             CCCCC-------------------cceEEEEECCCCceEEcc
Confidence            11100                   026888888776555544

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=98.66  E-value=1e-05  Score=71.70  Aligned_cols=199  Identities=17%  Similarity=0.210  Sum_probs=112.1

Q ss_pred             CCceEEEcCCCCeeEEEec------------CCEEEEEEcCCCCeE-EeeecCCCccccccCCCCCcccCCCcCCeeeEE
Q 019290           36 GPESLAFDCNGEGPYVGVS------------DGRILKWKAANSGWT-EFATTAPHRAREICDGSTNTTLEPLCGRPLGIK  102 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~------------~g~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~  102 (343)
                      ++.++.+|+.|++|+.++.            ..+|+.||..+.+.. .|.....              ........+.+.
T Consensus         2 sV~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~--------------~~~~~s~lndl~   67 (287)
T PF03022_consen    2 SVQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPD--------------IAPPDSFLNDLV   67 (287)
T ss_dssp             -EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CC--------------CS-TCGGEEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChH--------------HcccccccceEE
Confidence            4568899999994445432            138999999887643 3322111              111233456788


Q ss_pred             EeCCC-----CeEEEEeCC-CeEEEEeCCCCeEEEcccccCC-C-----------C---ccCcceeEEeC---CCCeEEE
Q 019290          103 FNPVT-----CDLYIADAY-FGLMVVGPNGGQAQQLASSAGG-I-----------P---FRFTNDLDIDP---NTGIVYF  158 (343)
Q Consensus       103 ~~~~~-----~~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~-~-----------~---~~~~~~i~~d~---~dg~l~v  158 (343)
                      ++...     +.+|++|.. .||.++|.++++..++...... .           .   ...+.+++..+   +...||+
T Consensus        68 VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf  147 (287)
T PF03022_consen   68 VDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYF  147 (287)
T ss_dssp             EECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEE
T ss_pred             EEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEE
Confidence            88633     479999976 5799999999887665322100 0           0   01133444433   1124665


Q ss_pred             EeCCcccccccceeeeeecCCCceEEEEeCC---CC----------ceEEeecCCCCcceeEEecCCCEEEEEEcCCCeE
Q 019290          159 TDSSIYFQRRQYFMSIATGDRSGRLLKYDPL---KK----------NVTVMYNGLSFPNGVALSNNNSFLLLAESATLKI  225 (343)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~---~~----------~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i  225 (343)
                      .-.+                 +..+|++..+   ..          +++.+-.......|++++++| .||++....+.|
T Consensus       148 ~~ls-----------------s~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G-~ly~~~~~~~aI  209 (287)
T PF03022_consen  148 HPLS-----------------SRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNG-NLYFTDVEQNAI  209 (287)
T ss_dssp             EETT------------------SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTT-EEEEEECCCTEE
T ss_pred             EeCC-----------------CCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEECCCC-cEEEecCCCCeE
Confidence            4432                 3345655421   00          111222222456789999865 699999999999


Q ss_pred             EEEEccCccccccceeeecCC---CCCCceeeCC--CCCEEEEecc
Q 019290          226 LRFWLQGERTTYTPQLFAEMP---RFPDNIKSDS--KGEFWIAMNS  266 (343)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~---~~p~~i~~d~--~G~lwi~~~~  266 (343)
                      .+|+.+++-...+.++++..+   ..|+++.++.  +|.||+.++.
T Consensus       210 ~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~snr  255 (287)
T PF03022_consen  210 GCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSNR  255 (287)
T ss_dssp             EEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-S
T ss_pred             EEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEECc
Confidence            999988643313445555422   4699999999  9999999875

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=98.63  E-value=5.1e-05  Score=63.46  Aligned_cols=197  Identities=12%  Similarity=0.067  Sum_probs=119.2

Q ss_pred             cccccCCCCCCCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeC
Q 019290           26 YQQLQLPGVVGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNP  105 (343)
Q Consensus        26 ~~~~~~~~~~~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~  105 (343)
                      ++.++.+. .....|.+.+++..|-++ ..-.|..||.++..-..+..                 .+.....+..+.|..
T Consensus        33 ~rTiqh~d-sqVNrLeiTpdk~~LAaa-~~qhvRlyD~~S~np~Pv~t-----------------~e~h~kNVtaVgF~~   93 (311)
T KOG0315|consen   33 SRTIQHPD-SQVNRLEITPDKKDLAAA-GNQHVRLYDLNSNNPNPVAT-----------------FEGHTKNVTAVGFQC   93 (311)
T ss_pred             EEEEecCc-cceeeEEEcCCcchhhhc-cCCeeEEEEccCCCCCceeE-----------------EeccCCceEEEEEee
Confidence            45566663 357889999999844433 44457777776643211110                 012223456677776


Q ss_pred             CCCeEEEEeCCCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEE
Q 019290          106 VTCDLYIADAYFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLL  184 (343)
Q Consensus       106 ~~~~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~  184 (343)
                      ++..+|-+ ..+| +..+|.+.-..++.....     ..+|.+.+.|+.+.|+++|.+                  |.|.
T Consensus        94 dgrWMyTg-seDgt~kIWdlR~~~~qR~~~~~-----spVn~vvlhpnQteLis~dqs------------------g~ir  149 (311)
T KOG0315|consen   94 DGRWMYTG-SEDGTVKIWDLRSLSCQRNYQHN-----SPVNTVVLHPNQTELISGDQS------------------GNIR  149 (311)
T ss_pred             cCeEEEec-CCCceEEEEeccCcccchhccCC-----CCcceEEecCCcceEEeecCC------------------CcEE
Confidence            34456665 5677 667788764444333221     457899999976889997764                  6788


Q ss_pred             EEeCCCCceEE-e-ecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCC---CCCCceeeCCCCC
Q 019290          185 KYDPLKKNVTV-M-YNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMP---RFPDNIKSDSKGE  259 (343)
Q Consensus       185 ~~d~~~~~~~~-~-~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~---~~p~~i~~d~~G~  259 (343)
                      .+|........ + .........+.+.+||..|..++ ..|..|+|++-+...-..++.+.+..   ++.-...++||++
T Consensus       150 vWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~n-nkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k  228 (311)
T KOG0315|consen  150 VWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAAN-NKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVK  228 (311)
T ss_pred             EEEccCCccccccCCCCCcceeeEEEcCCCcEEEEec-CCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCc
Confidence            89986553322 2 23345578899999998765554 57889999987643213333333322   2222234688998


Q ss_pred             EEEEecc
Q 019290          260 FWIAMNS  266 (343)
Q Consensus       260 lwi~~~~  266 (343)
                      ...++..
T Consensus       229 ~lat~ss  235 (311)
T KOG0315|consen  229 YLATCSS  235 (311)
T ss_pred             EEEeecC
Confidence            8887765

>PRK03629 tolB translocation protein TolB; Provisional

Probab=98.60  E-value=0.00015  Score=68.30  Aligned_cols=141  Identities=17%  Similarity=0.175  Sum_probs=85.2

Q ss_pred             eeeEEEeCCCCeEEEEeCC---CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCe-EEEEeCCcccccccceee
Q 019290           98 PLGIKFNPVTCDLYIADAY---FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGI-VYFTDSSIYFQRRQYFMS  173 (343)
Q Consensus        98 p~gi~~~~~~~~l~v~~~~---~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~-l~v~~~~~~~~~~~~~~~  173 (343)
                      .....+++++..|.+....   ..++.++.++++.+.+....     ......++.| ||+ |+++...           
T Consensus       201 ~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~-----~~~~~~~~SP-DG~~La~~~~~-----------  263 (429)
T PRK03629        201 LMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFP-----RHNGAPAFSP-DGSKLAFALSK-----------  263 (429)
T ss_pred             eeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCC-----CCcCCeEECC-CCCEEEEEEcC-----------
Confidence            3467788844455544222   34899999988776654321     1233578888 565 6654322           


Q ss_pred             eeecCCCceEEEEeCCCCceEEeecCCCCcceeEEecCCCEEEEEEcCC--CeEEEEEccCccccccceeeecCCCCCCc
Q 019290          174 IATGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESAT--LKILRFWLQGERTTYTPQLFAEMPRFPDN  251 (343)
Q Consensus       174 ~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~p~~  251 (343)
                          .+...||.+|.++++.+.+...........++|||+.++++....  ..||++++++    +..+.+.........
T Consensus       264 ----~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~----g~~~~lt~~~~~~~~  335 (429)
T PRK03629        264 ----TGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNING----GAPQRITWEGSQNQD  335 (429)
T ss_pred             ----CCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCC----CCeEEeecCCCCccC
Confidence                112359999998888877655444456788999999887665432  3788888765    232333222222334


Q ss_pred             eeeCCCCCEEEE
Q 019290          252 IKSDSKGEFWIA  263 (343)
Q Consensus       252 i~~d~~G~lwi~  263 (343)
                      ..+++||+..+.
T Consensus       336 ~~~SpDG~~Ia~  347 (429)
T PRK03629        336 ADVSSDGKFMVM  347 (429)
T ss_pred             EEECCCCCEEEE
Confidence            677888864433

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.60  E-value=3.4e-05  Score=66.41  Aligned_cols=199  Identities=16%  Similarity=0.199  Sum_probs=107.7

Q ss_pred             CeeeEEEeCCCCeEEEEeCCCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeee
Q 019290           97 RPLGIKFNPVTCDLYIADAYFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIA  175 (343)
Q Consensus        97 ~p~gi~~~~~~~~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~  175 (343)
                      .+-||+++++.++||......+ |+.++.+ |++..-.... +  ..-+-+|+.-. ++.+.+++..             
T Consensus        23 e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~-g--~~D~EgI~y~g-~~~~vl~~Er-------------   84 (248)
T PF06977_consen   23 ELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLD-G--FGDYEGITYLG-NGRYVLSEER-------------   84 (248)
T ss_dssp             -EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-S-S---SSEEEEEE-S-TTEEEEEETT-------------
T ss_pred             CccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCC-C--CCCceeEEEEC-CCEEEEEEcC-------------
Confidence            4679999997788988755444 9999987 4443322221 1  23467888877 4777776633             


Q ss_pred             ecCCCceEEEEeC--CCCce-----EEee-----cCCCCcceeEEecCCCEEEEEEc-CCCeEEEEEc--cCccc-cccc
Q 019290          176 TGDRSGRLLKYDP--LKKNV-----TVMY-----NGLSFPNGVALSNNNSFLLLAES-ATLKILRFWL--QGERT-TYTP  239 (343)
Q Consensus       176 ~~~~~~~v~~~d~--~~~~~-----~~~~-----~~~~~~~~i~~~~d~~~lyv~~~-~~~~i~~~~~--~~~~~-~~~~  239 (343)
                          .+.++.++.  .+...     ..+.     .+-....|+|+++.++.||++.. ....|+.++.  .+... ....
T Consensus        85 ----~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~  160 (248)
T PF06977_consen   85 ----DQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDD  160 (248)
T ss_dssp             ----TTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-
T ss_pred             ----CCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccc
Confidence                345655544  22221     1111     12234689999999888888743 3345666664  11110 0000


Q ss_pred             eeee-c--CCCCCCceeeCCC-CCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECCCCCEEEEeeCCCC---
Q 019290          240 QLFA-E--MPRFPDNIKSDSK-GEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEG---  312 (343)
Q Consensus       240 ~~~~-~--~~~~p~~i~~d~~-G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~~---  312 (343)
                      ..+. .  .-.-+.++.+|+. |++||-+..                        ...|..+|.+|+.+..+....+   
T Consensus       161 ~~~~~~~~~~~d~S~l~~~p~t~~lliLS~e------------------------s~~l~~~d~~G~~~~~~~L~~g~~g  216 (248)
T PF06977_consen  161 QDLDDDKLFVRDLSGLSYDPRTGHLLILSDE------------------------SRLLLELDRQGRVVSSLSLDRGFHG  216 (248)
T ss_dssp             HHHH-HT--SS---EEEEETTTTEEEEEETT------------------------TTEEEEE-TT--EEEEEE-STTGGG
T ss_pred             cccccccceeccccceEEcCCCCeEEEEECC------------------------CCeEEEECCCCCEEEEEEeCCcccC
Confidence            0000 0  0113778888885 789999877                        4578899999999888876554   


Q ss_pred             --CccCCceeEEEe-CCEEEEecCCCCeEEEEc
Q 019290          313 --NTLNSVSEVQEY-GEYLYTGSSVQPYVVVIK  342 (343)
Q Consensus       313 --~~~~~~~~~~~~-~g~l~i~~~~~~~i~~~~  342 (343)
                        ..+..+-++..+ +|+|||.+- .|..+|++
T Consensus       217 l~~~~~QpEGIa~d~~G~LYIvsE-pNlfy~f~  248 (248)
T PF06977_consen  217 LSKDIPQPEGIAFDPDGNLYIVSE-PNLFYRFE  248 (248)
T ss_dssp             -SS---SEEEEEE-TT--EEEEET-TTEEEEEE
T ss_pred             cccccCCccEEEECCCCCEEEEcC-CceEEEeC
Confidence              123455555555 899999996 66777763

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=98.60  E-value=3.9e-05  Score=73.20  Aligned_cols=185  Identities=14%  Similarity=0.157  Sum_probs=120.0

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCe-EEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEe
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGW-TEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIAD  114 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~  114 (343)
                      .-.++++.|||.++.++..+|.|-.||...+-. ..|.                    .......++.+.. .++..++.
T Consensus       352 ~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFt--------------------eHts~Vt~v~f~~-~g~~llss  410 (893)
T KOG0291|consen  352 RITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFT--------------------EHTSGVTAVQFTA-RGNVLLSS  410 (893)
T ss_pred             ceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEec--------------------cCCCceEEEEEEe-cCCEEEEe
Confidence            467999999999888999999999999765422 1221                    1223467899998 56655554


Q ss_pred             CCCe-EEEEeCCCCe-EEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCc
Q 019290          115 AYFG-LMVVGPNGGQ-AQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKN  192 (343)
Q Consensus       115 ~~~g-i~~~d~~~~~-~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~  192 (343)
                      .-+| |..+|..-.+ ++.+ ..+.   -.....+++|+. |.+.++..-.                .-.|+.++.++|+
T Consensus       411 SLDGtVRAwDlkRYrNfRTf-t~P~---p~QfscvavD~s-GelV~AG~~d----------------~F~IfvWS~qTGq  469 (893)
T KOG0291|consen  411 SLDGTVRAWDLKRYRNFRTF-TSPE---PIQFSCVAVDPS-GELVCAGAQD----------------SFEIFVWSVQTGQ  469 (893)
T ss_pred             ecCCeEEeeeecccceeeee-cCCC---ceeeeEEEEcCC-CCEEEeeccc----------------eEEEEEEEeecCe
Confidence            5566 8888876432 2222 1111   135678999995 8887754331                2358899999998


Q ss_pred             eEEeecCCCC-cceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCC-CEEEEecc
Q 019290          193 VTVMYNGLSF-PNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKG-EFWIAMNS  266 (343)
Q Consensus       193 ~~~~~~~~~~-~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G-~lwi~~~~  266 (343)
                      ...+..+-.. ..+++|++++..| ++.+-+.+|.+|++-+..  +..+.+. .....-++.+.|+| +|-+++.+
T Consensus       470 llDiLsGHEgPVs~l~f~~~~~~L-aS~SWDkTVRiW~if~s~--~~vEtl~-i~sdvl~vsfrPdG~elaVaTld  541 (893)
T KOG0291|consen  470 LLDILSGHEGPVSGLSFSPDGSLL-ASGSWDKTVRIWDIFSSS--GTVETLE-IRSDVLAVSFRPDGKELAVATLD  541 (893)
T ss_pred             eeehhcCCCCcceeeEEccccCeE-EeccccceEEEEEeeccC--ceeeeEe-eccceeEEEEcCCCCeEEEEEec
Confidence            8766665554 4678999999855 566678999999976421  1223321 11123345667777 56666655

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.59  E-value=7.3e-05  Score=70.16  Aligned_cols=206  Identities=16%  Similarity=0.157  Sum_probs=119.9

Q ss_pred             ceEEEcCCCCeeEEEe-cC--CEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEe
Q 019290           38 ESLAFDCNGEGPYVGV-SD--GRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIAD  114 (343)
Q Consensus        38 ~~l~~d~~g~~l~~~~-~~--g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~  114 (343)
                      .+..++++|+.+++.. .+  ..|+.+|..++....+..                    ..+....+.++++++.|+++.
T Consensus       193 ~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~--------------------~~~~~~~~~~spDg~~l~~~~  252 (417)
T TIGR02800       193 LSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVAS--------------------FPGMNGAPAFSPDGSKLAVSL  252 (417)
T ss_pred             ecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeec--------------------CCCCccceEECCCCCEEEEEE
Confidence            4566889999665433 22  479999988776554421                    011223466787455677654


Q ss_pred             CCC---eEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCe-EEEEeCCcccccccceeeeeecCCCceEEEEeCCC
Q 019290          115 AYF---GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGI-VYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLK  190 (343)
Q Consensus       115 ~~~---gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~  190 (343)
                      ...   .|+.++.++++.+.+.... .    ......+.+ ||+ |+++...               .....||.+|..+
T Consensus       253 ~~~~~~~i~~~d~~~~~~~~l~~~~-~----~~~~~~~s~-dg~~l~~~s~~---------------~g~~~iy~~d~~~  311 (417)
T TIGR02800       253 SKDGNPDIYVMDLDGKQLTRLTNGP-G----IDTEPSWSP-DGKSIAFTSDR---------------GGSPQIYMMDADG  311 (417)
T ss_pred             CCCCCccEEEEECCCCCEEECCCCC-C----CCCCEEECC-CCCEEEEEECC---------------CCCceEEEEECCC
Confidence            332   4999999988776653221 1    122345666 454 5443321               1134699999887


Q ss_pred             CceEEeecCCCCcceeEEecCCCEEEEEEcCC--CeEEEEEccCccccccceeeecCCCCCCceeeCCCCC-EEEEeccC
Q 019290          191 KNVTVMYNGLSFPNGVALSNNNSFLLLAESAT--LKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGE-FWIAMNSA  267 (343)
Q Consensus       191 ~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-lwi~~~~~  267 (343)
                      ++...+..........+++++++.++++....  ..|+.+++.+    +..+.+... .......+.++|+ |+++... 
T Consensus       312 ~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~----~~~~~l~~~-~~~~~p~~spdg~~l~~~~~~-  385 (417)
T TIGR02800       312 GEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDG----GGERVLTDT-GLDESPSFAPNGRMILYATTR-  385 (417)
T ss_pred             CCEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCC----CCeEEccCC-CCCCCceECCCCCEEEEEEeC-
Confidence            77766554444456778999999888876533  3788888765    222333221 1233446778885 4444443 


Q ss_pred             CCccccccccccccccCCCcccCCCeEEEECCCCCEEEEeeCCC
Q 019290          268 RGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNE  311 (343)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~  311 (343)
                      ..                     ...++.++.+|+....+..+.
T Consensus       386 ~~---------------------~~~l~~~~~~g~~~~~~~~~~  408 (417)
T TIGR02800       386 GG---------------------RGVLGLVSTDGRFRARLPLGN  408 (417)
T ss_pred             CC---------------------cEEEEEEECCCceeeECCCCC
Confidence            22                     125566667787766665443

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.59  E-value=0.00011  Score=66.50  Aligned_cols=216  Identities=12%  Similarity=0.095  Sum_probs=114.0

Q ss_pred             CccccccccCCC------CCCCceEEEcCCCCeeEEEe-c-CCEEEEEEcCCCCeE-EeeecCCCccccccCCCCCcccC
Q 019290           22 SSKSYQQLQLPG------VVGPESLAFDCNGEGPYVGV-S-DGRILKWKAANSGWT-EFATTAPHRAREICDGSTNTTLE   92 (343)
Q Consensus        22 ~~~~~~~~~~~~------~~~p~~l~~d~~g~~l~~~~-~-~g~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~   92 (343)
                      +.+..+++++|.      ...|+.+++++||+.+|+.. . ...+-.+|..++++. ++.                    
T Consensus        86 t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~--------------------  145 (352)
T TIGR02658        86 THLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMD--------------------  145 (352)
T ss_pred             cCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEe--------------------
Confidence            366677888873      23455999999999889664 3 678999998876543 231                    


Q ss_pred             CCcCCeeeEEEeCCCCeEEEEeCCCeEEEEeCCCCeEEEcc----cccCCCCccCcceeEEeCCCCeEEEEeCCcccccc
Q 019290           93 PLCGRPLGIKFNPVTCDLYIADAYFGLMVVGPNGGQAQQLA----SSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRR  168 (343)
Q Consensus        93 ~~~~~p~gi~~~~~~~~l~v~~~~~gi~~~d~~~~~~~~~~----~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~  168 (343)
                       ...++......++...+.+.|...-...++.+ |+...-.    ......-+..+ ... ...+..+|++.        
T Consensus       146 -vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~-g~~~~~~~~vf~~~~~~v~~rP-~~~-~~dg~~~~vs~--------  213 (352)
T TIGR02658       146 -VPDCYHIFPTANDTFFMHCRDGSLAKVGYGTK-GNPKIKPTEVFHPEDEYLINHP-AYS-NKSGRLVWPTY--------  213 (352)
T ss_pred             -CCCCcEEEEecCCccEEEeecCceEEEEecCC-CceEEeeeeeecCCccccccCC-ceE-cCCCcEEEEec--------
Confidence             11112222222212223333211112222222 2222110    11111112223 111 21224566643        


Q ss_pred             cceeeeeecCCCceEEEEeCCCCceEE-----eec-----CCCCcce---eEEecCCCEEEEEE---------cCCCeEE
Q 019290          169 QYFMSIATGDRSGRLLKYDPLKKNVTV-----MYN-----GLSFPNG---VALSNNNSFLLLAE---------SATLKIL  226 (343)
Q Consensus       169 ~~~~~~~~~~~~~~v~~~d~~~~~~~~-----~~~-----~~~~~~~---i~~~~d~~~lyv~~---------~~~~~i~  226 (343)
                                 .|.|+.+|..+.....     ...     ..-.|.+   ++++++++++|+..         ..++.|+
T Consensus       214 -----------eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~  282 (352)
T TIGR02658       214 -----------TGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLF  282 (352)
T ss_pred             -----------CCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEE
Confidence                       3578888854322211     111     1223444   99999999999953         2236899


Q ss_pred             EEEccCccccccceeeecCCCCCCceeeCCCCC-EEEEeccCCCccccccccccccccCCCcccCCCeEEEECC-CCCEE
Q 019290          227 RFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGE-FWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDV-NGNVV  304 (343)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~  304 (343)
                      ++|..+..    ..........|.++++++||+ +.++++..                       .+.|..+|. .++.+
T Consensus       283 ViD~~t~k----vi~~i~vG~~~~~iavS~Dgkp~lyvtn~~-----------------------s~~VsViD~~t~k~i  335 (352)
T TIGR02658       283 VVDAKTGK----RLRKIELGHEIDSINVSQDAKPLLYALSTG-----------------------DKTLYIFDAETGKEL  335 (352)
T ss_pred             EEECCCCe----EEEEEeCCCceeeEEECCCCCeEEEEeCCC-----------------------CCcEEEEECcCCeEE
Confidence            99976522    211122344688999999998 55555531                       246788997 57777


Q ss_pred             EEe
Q 019290          305 DVL  307 (343)
Q Consensus       305 ~~~  307 (343)
                      ..+
T Consensus       336 ~~i  338 (352)
T TIGR02658       336 SSV  338 (352)
T ss_pred             eee
Confidence            766

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.57  E-value=0.00017  Score=67.52  Aligned_cols=204  Identities=9%  Similarity=0.023  Sum_probs=123.9

Q ss_pred             eEEEcCCCCe-eE-EEec--CCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEe
Q 019290           39 SLAFDCNGEG-PY-VGVS--DGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIAD  114 (343)
Q Consensus        39 ~l~~d~~g~~-l~-~~~~--~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~  114 (343)
                      ...+++||+. +| +...  ...||.+|..+++...+...                    .+......+++++..|.+..
T Consensus       192 ~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~--------------------~g~~~~~~~SPDG~~la~~~  251 (419)
T PRK04043        192 FPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASS--------------------QGMLVVSDVSKDGSKLLLTM  251 (419)
T ss_pred             eEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecC--------------------CCcEEeeEECCCCCEEEEEE
Confidence            6778999973 55 3433  35799999988877666421                    11112234677445666553


Q ss_pred             CC---CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCC-eEEEEeCCcccccccceeeeeecCCCceEEEEeCCC
Q 019290          115 AY---FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTG-IVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLK  190 (343)
Q Consensus       115 ~~---~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg-~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~  190 (343)
                      ..   ..|+.++.++++.+++.....     .-....+.| || +|+++...               .....||++|.++
T Consensus       252 ~~~g~~~Iy~~dl~~g~~~~LT~~~~-----~d~~p~~SP-DG~~I~F~Sdr---------------~g~~~Iy~~dl~~  310 (419)
T PRK04043        252 APKGQPDIYLYDTNTKTLTQITNYPG-----IDVNGNFVE-DDKRIVFVSDR---------------LGYPNIFMKKLNS  310 (419)
T ss_pred             ccCCCcEEEEEECCCCcEEEcccCCC-----ccCccEECC-CCCEEEEEECC---------------CCCceEEEEECCC
Confidence            32   349999998888777643211     112235777 45 57775432               1134699999998


Q ss_pred             CceEEeecCCCCcceeEEecCCCEEEEEEcCC--------CeEEEEEccCccccccceeeecCCCCCCceeeCCCCC-EE
Q 019290          191 KNVTVMYNGLSFPNGVALSNNNSFLLLAESAT--------LKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGE-FW  261 (343)
Q Consensus       191 ~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~--------~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-lw  261 (343)
                      ++.+++..... .+ ..++|||+.+.++....        ..|+.+++++    ++.+.+... +......+.+||+ |+
T Consensus       311 g~~~rlt~~g~-~~-~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~----g~~~~LT~~-~~~~~p~~SPDG~~I~  383 (419)
T PRK04043        311 GSVEQVVFHGK-NN-SSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNS----DYIRRLTAN-GVNQFPRFSSDGGSIM  383 (419)
T ss_pred             CCeEeCccCCC-cC-ceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCC----CCeEECCCC-CCcCCeEECCCCCEEE
Confidence            88866653322 22 47899999887765432        4789998876    333444332 2223456789986 55


Q ss_pred             EEeccCCCccccccccccccccCCCcccCCCeEEEECCCCCEEEEeeCCCC
Q 019290          262 IAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEG  312 (343)
Q Consensus       262 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~~  312 (343)
                      +++.. +.                     ...++.++.+|.....+....+
T Consensus       384 f~~~~-~~---------------------~~~L~~~~l~g~~~~~l~~~~g  412 (419)
T PRK04043        384 FIKYL-GN---------------------QSALGIIRLNYNKSFLFPLKVG  412 (419)
T ss_pred             EEEcc-CC---------------------cEEEEEEecCCCeeEEeecCCC
Confidence            55543 22                     2368888889887666654333

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.56  E-value=0.00015  Score=68.66  Aligned_cols=139  Identities=13%  Similarity=0.059  Sum_probs=82.5

Q ss_pred             eEEEeCCCCeEEEEeCCC---eEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCe-EEEEeCCcccccccceeeee
Q 019290          100 GIKFNPVTCDLYIADAYF---GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGI-VYFTDSSIYFQRRQYFMSIA  175 (343)
Q Consensus       100 gi~~~~~~~~l~v~~~~~---gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~-l~v~~~~~~~~~~~~~~~~~  175 (343)
                      ...+++++..|+++....   .|+.+|.++++.+.+.... +    .....++.+ ||+ ++++...             
T Consensus       222 ~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~-g----~~~~~~wSP-DG~~La~~~~~-------------  282 (448)
T PRK04792        222 SPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFP-G----INGAPRFSP-DGKKLALVLSK-------------  282 (448)
T ss_pred             CceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCC-C----CcCCeeECC-CCCEEEEEEeC-------------
Confidence            456777455565553322   4999999988776653221 1    123567888 465 6654322             


Q ss_pred             ecCCCceEEEEeCCCCceEEeecCCCCcceeEEecCCCEEEEEEcC--CCeEEEEEccCccccccceeeecCCCCCCcee
Q 019290          176 TGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESA--TLKILRFWLQGERTTYTPQLFAEMPRFPDNIK  253 (343)
Q Consensus       176 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~  253 (343)
                        .+...||.+|.++++.+.+..........++++|++.++++...  ...||++++++    ++.+.+...........
T Consensus       283 --~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~----g~~~~Lt~~g~~~~~~~  356 (448)
T PRK04792        283 --DGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLAS----GKVSRLTFEGEQNLGGS  356 (448)
T ss_pred             --CCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC----CCEEEEecCCCCCcCee
Confidence              11346999999888877665443344567889999988877543  35688888765    22222221111123456


Q ss_pred             eCCCCCEEEE
Q 019290          254 SDSKGEFWIA  263 (343)
Q Consensus       254 ~d~~G~lwi~  263 (343)
                      +++||+..+.
T Consensus       357 ~SpDG~~l~~  366 (448)
T PRK04792        357 ITPDGRSMIM  366 (448)
T ss_pred             ECCCCCEEEE
Confidence            7888854333

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=98.56  E-value=4.6e-05  Score=63.70  Aligned_cols=183  Identities=14%  Similarity=0.159  Sum_probs=115.7

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      +...+.|..+|+.+|++.++|.+-.||.......+.                    ......++.+.+++.+..|+++|.
T Consensus        85 NVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~--------------------~~~~spVn~vvlhpnQteLis~dq  144 (311)
T KOG0315|consen   85 NVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRN--------------------YQHNSPVNTVVLHPNQTELISGDQ  144 (311)
T ss_pred             ceEEEEEeecCeEEEecCCCceEEEEeccCcccchh--------------------ccCCCCcceEEecCCcceEEeecC
Confidence            456777889999889999999999999876443322                    122234578999997788999864


Q ss_pred             CCeEEEEeCCCCeEEEc-ccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceE
Q 019290          116 YFGLMVVGPNGGQAQQL-ASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVT  194 (343)
Q Consensus       116 ~~gi~~~d~~~~~~~~~-~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~  194 (343)
                      ...|+.+|+........ .+.    ....+.++++++ ||.+.++...                 .|+.|+++.-++...
T Consensus       145 sg~irvWDl~~~~c~~~liPe----~~~~i~sl~v~~-dgsml~a~nn-----------------kG~cyvW~l~~~~~~  202 (311)
T KOG0315|consen  145 SGNIRVWDLGENSCTHELIPE----DDTSIQSLTVMP-DGSMLAAANN-----------------KGNCYVWRLLNHQTA  202 (311)
T ss_pred             CCcEEEEEccCCccccccCCC----CCcceeeEEEcC-CCcEEEEecC-----------------CccEEEEEccCCCcc
Confidence            44499999976543332 221    125688999999 6998886554                 677787776543321


Q ss_pred             -Eee--cCC----CCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCc---eeeCCCCCEEEEe
Q 019290          195 -VMY--NGL----SFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDN---IKSDSKGEFWIAM  264 (343)
Q Consensus       195 -~~~--~~~----~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~---i~~d~~G~lwi~~  264 (343)
                       .+.  ..+    ...-...++||+++|- +.+.+..+.+|+.++-     ++.-..+.+.-..   -+++.||+..++.
T Consensus       203 s~l~P~~k~~ah~~~il~C~lSPd~k~la-t~ssdktv~iwn~~~~-----~kle~~l~gh~rWvWdc~FS~dg~YlvTa  276 (311)
T KOG0315|consen  203 SELEPVHKFQAHNGHILRCLLSPDVKYLA-TCSSDKTVKIWNTDDF-----FKLELVLTGHQRWVWDCAFSADGEYLVTA  276 (311)
T ss_pred             ccceEhhheecccceEEEEEECCCCcEEE-eecCCceEEEEecCCc-----eeeEEEeecCCceEEeeeeccCccEEEec
Confidence             111  111    2233445789988654 5556889999997662     1111112222222   3567889877775


Q ss_pred             cc
Q 019290          265 NS  266 (343)
Q Consensus       265 ~~  266 (343)
                      ..
T Consensus       277 ss  278 (311)
T KOG0315|consen  277 SS  278 (311)
T ss_pred             CC
Confidence            54

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.56  E-value=3.8e-05  Score=66.03  Aligned_cols=193  Identities=13%  Similarity=0.137  Sum_probs=116.0

Q ss_pred             CCceEEEcCCCCeeEEEec-CCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEe
Q 019290           36 GPESLAFDCNGEGPYVGVS-DGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIAD  114 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~-~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~  114 (343)
                      +..+|.++++-+.||+.++ ...|+.++.++.-+..++.                   .....|.+|.+.. +|...+++
T Consensus        87 nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL-------------------~g~~DpE~Ieyig-~n~fvi~d  146 (316)
T COG3204          87 NVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPL-------------------TGFSDPETIEYIG-GNQFVIVD  146 (316)
T ss_pred             cccceeeCCCcceEEEecCCCceEEEEecCCceEEEecc-------------------cccCChhHeEEec-CCEEEEEe
Confidence            4789999999888886654 4568888877765555532                   2233467777775 55555555


Q ss_pred             CCCe-EEE--EeCCCCeEEEcc---cc-cCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEe
Q 019290          115 AYFG-LMV--VGPNGGQAQQLA---SS-AGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYD  187 (343)
Q Consensus       115 ~~~g-i~~--~d~~~~~~~~~~---~~-~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d  187 (343)
                      ...+ ++.  +|.++.......   +. ..........++|.|+.+.++|++-..+                .-+||.++
T Consensus       147 ER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~----------------P~~I~~~~  210 (316)
T COG3204         147 ERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERN----------------PIGIFEVT  210 (316)
T ss_pred             hhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccC----------------CcEEEEEe
Confidence            4333 444  455543221110   11 1111245678999999778899964321                34677776


Q ss_pred             CCCCceEEeecC---------CCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeee------c-CCCCCCc
Q 019290          188 PLKKNVTVMYNG---------LSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFA------E-MPRFPDN  251 (343)
Q Consensus       188 ~~~~~~~~~~~~---------~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~------~-~~~~p~~  251 (343)
                      ........-...         +....++.+++..+.|+|-+...+.|..++..|.-. .......      . .+ .++|
T Consensus       211 ~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~-~~lsL~~g~~gL~~dip-qaEG  288 (316)
T COG3204         211 QSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVI-ELLSLTKGNHGLSSDIP-QAEG  288 (316)
T ss_pred             cCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCee-eeEEeccCCCCCcccCC-Ccce
Confidence            432222111100         123567888877778888888888888888877421 1111111      1 22 3889


Q ss_pred             eeeCCCCCEEEEecc
Q 019290          252 IKSDSKGEFWIAMNS  266 (343)
Q Consensus       252 i~~d~~G~lwi~~~~  266 (343)
                      ++.|.+|+|||++-.
T Consensus       289 iamDd~g~lYIvSEP  303 (316)
T COG3204         289 IAMDDDGNLYIVSEP  303 (316)
T ss_pred             eEECCCCCEEEEecC
Confidence            999999999999864

>PRK04922 tolB translocation protein TolB; Provisional

Probab=98.55  E-value=0.00013  Score=68.85  Aligned_cols=138  Identities=15%  Similarity=0.154  Sum_probs=82.9

Q ss_pred             eeEEEeCCCCeEEEEeCC---CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCe-EEEEeCCcccccccceeee
Q 019290           99 LGIKFNPVTCDLYIADAY---FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGI-VYFTDSSIYFQRRQYFMSI  174 (343)
Q Consensus        99 ~gi~~~~~~~~l~v~~~~---~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~-l~v~~~~~~~~~~~~~~~~  174 (343)
                      .+..++++++.|+++...   ..|+.+|.++++.+.+.... +    .....++.+ ||+ ++++...            
T Consensus       207 ~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~-g----~~~~~~~Sp-DG~~l~~~~s~------------  268 (433)
T PRK04922        207 LSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFR-G----INGAPSFSP-DGRRLALTLSR------------  268 (433)
T ss_pred             ccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCC-C----CccCceECC-CCCEEEEEEeC------------
Confidence            345667745566665433   23999999888776653221 1    123567888 464 6554322            


Q ss_pred             eecCCCceEEEEeCCCCceEEeecCCCCcceeEEecCCCEEEEEEcCC--CeEEEEEccCccccccceeeecCCCCCCce
Q 019290          175 ATGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESAT--LKILRFWLQGERTTYTPQLFAEMPRFPDNI  252 (343)
Q Consensus       175 ~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i  252 (343)
                         .+...||.+|.++++.+.+..........++++||+.++++....  ..||++++++    +..+.+..........
T Consensus       269 ---~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~----g~~~~lt~~g~~~~~~  341 (433)
T PRK04922        269 ---DGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASG----GSAERLTFQGNYNARA  341 (433)
T ss_pred             ---CCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC----CCeEEeecCCCCccCE
Confidence               113469999998888776654433345678999999888775443  3588888765    2223332222223356


Q ss_pred             eeCCCCCEE
Q 019290          253 KSDSKGEFW  261 (343)
Q Consensus       253 ~~d~~G~lw  261 (343)
                      .++++|+..
T Consensus       342 ~~SpDG~~I  350 (433)
T PRK04922        342 SVSPDGKKI  350 (433)
T ss_pred             EECCCCCEE
Confidence            788888643

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.53  E-value=0.00015  Score=66.75  Aligned_cols=175  Identities=18%  Similarity=0.232  Sum_probs=101.8

Q ss_pred             CCeeE-EEecCCEEEEEEcCCCCeE-EeeecCCCccccccCCCCCcccCCCcCCee-eEEEeCCCCeEEEEeCCCeEEEE
Q 019290           46 GEGPY-VGVSDGRILKWKAANSGWT-EFATTAPHRAREICDGSTNTTLEPLCGRPL-GIKFNPVTCDLYIADAYFGLMVV  122 (343)
Q Consensus        46 g~~l~-~~~~~g~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-gi~~~~~~~~l~v~~~~~gi~~~  122 (343)
                      +++++ +...++.|..+|..+.+.. ++.                     ....++ ++.+.++++.+|+++....|.++
T Consensus         5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~---------------------~~~~~h~~~~~s~Dgr~~yv~~rdg~vsvi   63 (369)
T PF02239_consen    5 GNLFYVVERGSGSVAVIDGATNKVVARIP---------------------TGGAPHAGLKFSPDGRYLYVANRDGTVSVI   63 (369)
T ss_dssp             GGEEEEEEGGGTEEEEEETTT-SEEEEEE----------------------STTEEEEEE-TT-SSEEEEEETTSEEEEE
T ss_pred             ccEEEEEecCCCEEEEEECCCCeEEEEEc---------------------CCCCceeEEEecCCCCEEEEEcCCCeEEEE
Confidence            45455 4456789999998876533 332                     112334 57788856679999755559999


Q ss_pred             eCCCCeEEEcccccCCCCccCcceeEEeCCCCe-EEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEeecC--
Q 019290          123 GPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGI-VYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNG--  199 (343)
Q Consensus       123 d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~--  199 (343)
                      |+.++++..-...  +   ..+.++++.+ ||+ +++++..                 .+.+..+|.++.+.......  
T Consensus        64 D~~~~~~v~~i~~--G---~~~~~i~~s~-DG~~~~v~n~~-----------------~~~v~v~D~~tle~v~~I~~~~  120 (369)
T PF02239_consen   64 DLATGKVVATIKV--G---GNPRGIAVSP-DGKYVYVANYE-----------------PGTVSVIDAETLEPVKTIPTGG  120 (369)
T ss_dssp             ETTSSSEEEEEE---S---SEEEEEEE---TTTEEEEEEEE-----------------TTEEEEEETTT--EEEEEE--E
T ss_pred             ECCcccEEEEEec--C---CCcceEEEcC-CCCEEEEEecC-----------------CCceeEeccccccceeeccccc
Confidence            9998875433222  2   3578999998 565 6665543                 56788999877665432211  


Q ss_pred             ------CCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEecc
Q 019290          200 ------LSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNS  266 (343)
Q Consensus       200 ------~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~~  266 (343)
                            .++..++..++.....+++-...++|+.++...... ... ...+...+|.+..+|++|+.+++...
T Consensus       121 ~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~-~~~-~~i~~g~~~~D~~~dpdgry~~va~~  191 (369)
T PF02239_consen  121 MPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKN-LKV-TTIKVGRFPHDGGFDPDGRYFLVAAN  191 (369)
T ss_dssp             E-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSC-EEE-EEEE--TTEEEEEE-TTSSEEEEEEG
T ss_pred             ccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccc-cce-eeecccccccccccCcccceeeeccc
Confidence                  123456666676665666667789999999765322 111 12224446888899999987655433

...

>PRK02889 tolB translocation protein TolB; Provisional

Probab=98.51  E-value=0.00023  Score=67.03  Aligned_cols=138  Identities=11%  Similarity=0.098  Sum_probs=80.5

Q ss_pred             eeEEEeCCCCeEEEEeCCC---eEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCC-eEEEEeCCcccccccceeee
Q 019290           99 LGIKFNPVTCDLYIADAYF---GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTG-IVYFTDSSIYFQRRQYFMSI  174 (343)
Q Consensus        99 ~gi~~~~~~~~l~v~~~~~---gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg-~l~v~~~~~~~~~~~~~~~~  174 (343)
                      ....++++++.|+++....   .|+.+|.++++.+.+....     ......++.| || .++++...            
T Consensus       199 ~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~-----g~~~~~~~SP-DG~~la~~~~~------------  260 (427)
T PRK02889        199 ISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFK-----GSNSAPAWSP-DGRTLAVALSR------------  260 (427)
T ss_pred             ccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCC-----CCccceEECC-CCCEEEEEEcc------------
Confidence            3567777555676654332   3999999988776653221     1234567888 46 46554322            


Q ss_pred             eecCCCceEEEEeCCCCceEEeecCCCCcceeEEecCCCEEEEEEcC--CCeEEEEEccCccccccceeeecCCCCCCce
Q 019290          175 ATGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESA--TLKILRFWLQGERTTYTPQLFAEMPRFPDNI  252 (343)
Q Consensus       175 ~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i  252 (343)
                         .+...||.+|.+++..+.+...........+++||+.++++...  ...||.++.++    +..+.+..........
T Consensus       261 ---~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~----g~~~~lt~~g~~~~~~  333 (427)
T PRK02889        261 ---DGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASG----GAAQRVTFTGSYNTSP  333 (427)
T ss_pred             ---CCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCC----CceEEEecCCCCcCce
Confidence               11346999998877766654433334456799999988776543  34677777654    2222222111122345


Q ss_pred             eeCCCCCEE
Q 019290          253 KSDSKGEFW  261 (343)
Q Consensus       253 ~~d~~G~lw  261 (343)
                      .++++|+..
T Consensus       334 ~~SpDG~~I  342 (427)
T PRK02889        334 RISPDGKLL  342 (427)
T ss_pred             EECCCCCEE
Confidence            678888643

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.51  E-value=0.0003  Score=66.35  Aligned_cols=138  Identities=12%  Similarity=0.170  Sum_probs=81.3

Q ss_pred             eeEEEeCCCCeEEEEeCC---CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCe-EEEEeCCcccccccceeee
Q 019290           99 LGIKFNPVTCDLYIADAY---FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGI-VYFTDSSIYFQRRQYFMSI  174 (343)
Q Consensus        99 ~gi~~~~~~~~l~v~~~~---~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~-l~v~~~~~~~~~~~~~~~~  174 (343)
                      ....++++++.|.+....   ..|+.++.++++.+.+.... +    ......+.| ||+ ++++...            
T Consensus       202 ~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~-g----~~~~~~~Sp-DG~~la~~~~~------------  263 (430)
T PRK00178        202 LSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFE-G----LNGAPAWSP-DGSKLAFVLSK------------  263 (430)
T ss_pred             eeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCC-C----CcCCeEECC-CCCEEEEEEcc------------
Confidence            456677755566554332   24999999988877664321 1    123467888 464 6554432            


Q ss_pred             eecCCCceEEEEeCCCCceEEeecCCCCcceeEEecCCCEEEEEEcC--CCeEEEEEccCccccccceeeecCCCCCCce
Q 019290          175 ATGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESA--TLKILRFWLQGERTTYTPQLFAEMPRFPDNI  252 (343)
Q Consensus       175 ~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i  252 (343)
                         .+...||.+|.++++.+.+...........+++|++.++++...  ...|+++++.+    ++.+.+..........
T Consensus       264 ---~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~----g~~~~lt~~~~~~~~~  336 (430)
T PRK00178        264 ---DGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNG----GRAERVTFVGNYNARP  336 (430)
T ss_pred             ---CCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCC----CCEEEeecCCCCccce
Confidence               11346999999888877655433334456789999988876543  34788888765    2222222111112234


Q ss_pred             eeCCCCCEE
Q 019290          253 KSDSKGEFW  261 (343)
Q Consensus       253 ~~d~~G~lw  261 (343)
                      ..+++|+..
T Consensus       337 ~~Spdg~~i  345 (430)
T PRK00178        337 RLSADGKTL  345 (430)
T ss_pred             EECCCCCEE
Confidence            667887543

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=98.49  E-value=2.4e-05  Score=72.94  Aligned_cols=183  Identities=15%  Similarity=0.145  Sum_probs=107.0

Q ss_pred             CCCCCCceEEEcCCCCeeEEEec-CCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCC----
Q 019290           32 PGVVGPESLAFDCNGEGPYVGVS-DGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPV----  106 (343)
Q Consensus        32 ~~~~~p~~l~~d~~g~~l~~~~~-~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~----  106 (343)
                      .++..|.+|++.++|+ +|+... .|+|+++++.++....+...+...            .....+...||+++++    
T Consensus        27 ~GL~~Pw~maflPDG~-llVtER~~G~I~~v~~~~~~~~~~~~l~~v~------------~~~ge~GLlglal~PdF~~~   93 (454)
T TIGR03606        27 SGLNKPWALLWGPDNQ-LWVTERATGKILRVNPETGEVKVVFTLPEIV------------NDAQHNGLLGLALHPDFMQE   93 (454)
T ss_pred             CCCCCceEEEEcCCCe-EEEEEecCCEEEEEeCCCCceeeeecCCcee------------ccCCCCceeeEEECCCcccc
Confidence            3788999999999998 666665 699999987665433332111000            0012345789999863    


Q ss_pred             --CCeEEEEeC----------CCeEEEEeCCC--Ce---EEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccc---
Q 019290          107 --TCDLYIADA----------YFGLMVVGPNG--GQ---AQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQ---  166 (343)
Q Consensus       107 --~~~l~v~~~----------~~gi~~~d~~~--~~---~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~---  166 (343)
                        ++.||++-+          ...|.++..+.  ..   .+.+.........+.-..|++++ ||.||++.......   
T Consensus        94 ~~n~~lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgP-DG~LYVs~GD~g~~~~~  172 (454)
T TIGR03606        94 KGNPYVYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGP-DGKIYYTIGEQGRNQGA  172 (454)
T ss_pred             CCCcEEEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECC-CCcEEEEECCCCCCCcc
Confidence              346898731          24577776532  11   12222222111234456789999 69999987553110   


Q ss_pred             ----ccccee-----ee---eecCCCceEEEEeCCCCc-----------eEEeecCCCCcceeEEecCCCEEEEEEcCC-
Q 019290          167 ----RRQYFM-----SI---ATGDRSGRLLKYDPLKKN-----------VTVMYNGLSFPNGVALSNNNSFLLLAESAT-  222 (343)
Q Consensus       167 ----~~~~~~-----~~---~~~~~~~~v~~~d~~~~~-----------~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~-  222 (343)
                          ......     .+   ......|+|+|+++++.-           .+.+..+++.|.++++++++ .||+++-.. 
T Consensus       173 n~~~~~~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~RNp~Gla~dp~G-~Lw~~e~Gp~  251 (454)
T TIGR03606       173 NFFLPNQAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYGHRNPQGLAFTPDG-TLYASEQGPN  251 (454)
T ss_pred             cccCcchhccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEeccccceeEECCCC-CEEEEecCCC
Confidence                000000     00   001125789999987431           24556678889999999965 588887543 


Q ss_pred             --CeEEEEE
Q 019290          223 --LKILRFW  229 (343)
Q Consensus       223 --~~i~~~~  229 (343)
                        ..|.++.
T Consensus       252 ~~DEiN~I~  260 (454)
T TIGR03606       252 SDDELNIIV  260 (454)
T ss_pred             CCcEEEEec
Confidence              4455544

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PRK01742 tolB translocation protein TolB; Provisional

Probab=98.48  E-value=0.0001  Score=69.53  Aligned_cols=202  Identities=16%  Similarity=0.195  Sum_probs=117.1

Q ss_pred             CceEEEcCCCCeeEE-Eec--CCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEE
Q 019290           37 PESLAFDCNGEGPYV-GVS--DGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIA  113 (343)
Q Consensus        37 p~~l~~d~~g~~l~~-~~~--~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~  113 (343)
                      ..++.++|||+.+.+ +..  +..|+.+|..+++...+...                    .+......+++++..|.++
T Consensus       206 v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~--------------------~g~~~~~~wSPDG~~La~~  265 (429)
T PRK01742        206 LMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASF--------------------RGHNGAPAFSPDGSRLAFA  265 (429)
T ss_pred             cccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecC--------------------CCccCceeECCCCCEEEEE
Confidence            467889999985543 332  24699999887665444211                    0111246788844567665


Q ss_pred             eCCC---eEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCe-EEEEeCCcccccccceeeeeecCCCceEEEEeCC
Q 019290          114 DAYF---GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGI-VYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPL  189 (343)
Q Consensus       114 ~~~~---gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~  189 (343)
                      ....   .|+.+|.++++.+.+....     .......+.+ ||+ |+++...               .+...||.++..
T Consensus       266 ~~~~g~~~Iy~~d~~~~~~~~lt~~~-----~~~~~~~wSp-DG~~i~f~s~~---------------~g~~~I~~~~~~  324 (429)
T PRK01742        266 SSKDGVLNIYVMGANGGTPSQLTSGA-----GNNTEPSWSP-DGQSILFTSDR---------------SGSPQVYRMSAS  324 (429)
T ss_pred             EecCCcEEEEEEECCCCCeEeeccCC-----CCcCCEEECC-CCCEEEEEECC---------------CCCceEEEEECC
Confidence            3333   3888999888776653211     1245678888 565 5554321               113468888877


Q ss_pred             CCceEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEeccCCC
Q 019290          190 KKNVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNSARG  269 (343)
Q Consensus       190 ~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~~~~~  269 (343)
                      ++..+.+ ... . ....++|||+.++++..  ..++++++.+    +..+.+... .......++++|+..+.....+.
T Consensus       325 ~~~~~~l-~~~-~-~~~~~SpDG~~ia~~~~--~~i~~~Dl~~----g~~~~lt~~-~~~~~~~~sPdG~~i~~~s~~g~  394 (429)
T PRK01742        325 GGGASLV-GGR-G-YSAQISADGKTLVMING--DNVVKQDLTS----GSTEVLSST-FLDESPSISPNGIMIIYSSTQGL  394 (429)
T ss_pred             CCCeEEe-cCC-C-CCccCCCCCCEEEEEcC--CCEEEEECCC----CCeEEecCC-CCCCCceECCCCCEEEEEEcCCC
Confidence            6655544 221 1 34678899998877653  5688888765    222222211 11234568899976665443222


Q ss_pred             ccccccccccccccCCCcccCCCeEEEECCCCCEEEEeeCC
Q 019290          270 KIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGN  310 (343)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~  310 (343)
                      .                     ..++..+.+|+....+...
T Consensus       395 ~---------------------~~l~~~~~~G~~~~~l~~~  414 (429)
T PRK01742        395 G---------------------KVLQLVSADGRFKARLPGS  414 (429)
T ss_pred             c---------------------eEEEEEECCCCceEEccCC
Confidence            1                     1344456788776666533

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=98.47  E-value=2.9e-05  Score=66.56  Aligned_cols=164  Identities=18%  Similarity=0.232  Sum_probs=104.9

Q ss_pred             cccccccCCCCCCCceEEEcCCCCeeE-EEecCCEEEEEEcCCCC-eEEeeecCCCccccccCCCCCcccCCCcCCeeeE
Q 019290           24 KSYQQLQLPGVVGPESLAFDCNGEGPY-VGVSDGRILKWKAANSG-WTEFATTAPHRAREICDGSTNTTLEPLCGRPLGI  101 (343)
Q Consensus        24 ~~~~~~~~~~~~~p~~l~~d~~g~~l~-~~~~~g~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi  101 (343)
                      +..++..+|.-.-.|+|+.-.+ + +| .....+..+.||+++-+ ...|.                     -.+...|+
T Consensus        79 ~~~~~~~l~~~~FgEGit~~~d-~-l~qLTWk~~~~f~yd~~tl~~~~~~~---------------------y~~EGWGL  135 (264)
T PF05096_consen   79 KVLQSVPLPPRYFGEGITILGD-K-LYQLTWKEGTGFVYDPNTLKKIGTFP---------------------YPGEGWGL  135 (264)
T ss_dssp             SEEEEEE-TTT--EEEEEEETT-E-EEEEESSSSEEEEEETTTTEEEEEEE----------------------SSS--EE
T ss_pred             cEEEEEECCccccceeEEEECC-E-EEEEEecCCeEEEEccccceEEEEEe---------------------cCCcceEE
Confidence            4456667775456788888743 3 56 66678889999998742 22332                     12345788


Q ss_pred             EEeCCCCeEEEEeCCCeEEEEeCCCCeEEE-cccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCC
Q 019290          102 KFNPVTCDLYIADAYFGLMVVGPNGGQAQQ-LASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRS  180 (343)
Q Consensus       102 ~~~~~~~~l~v~~~~~gi~~~d~~~~~~~~-~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~  180 (343)
                      +.+  +..||++|..+.|+.+|+++-+... +.-...+.+...+|.+-.-.  |.+|.--..                 .
T Consensus       136 t~d--g~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~--G~IyANVW~-----------------t  194 (264)
T PF05096_consen  136 TSD--GKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYIN--GKIYANVWQ-----------------T  194 (264)
T ss_dssp             EEC--SSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEET--TEEEEEETT-----------------S
T ss_pred             EcC--CCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEEc--CEEEEEeCC-----------------C
Confidence            855  6789999877789999998754433 22233455667788887764  899984433                 5


Q ss_pred             ceEEEEeCCCCceEEeec----------C------CCCcceeEEecCCCEEEEEEcCCCeEEEEEcc
Q 019290          181 GRLLKYDPLKKNVTVMYN----------G------LSFPNGVALSNNNSFLLLAESATLKILRFWLQ  231 (343)
Q Consensus       181 ~~v~~~d~~~~~~~~~~~----------~------~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~  231 (343)
                      ..|.++||.+|++.....          .      ..-.||||++++.+.+|++.-.-..++.+.+.
T Consensus       195 d~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~Wp~lyeV~l~  261 (264)
T PF05096_consen  195 DRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKLWPKLYEVKLV  261 (264)
T ss_dssp             SEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT-SEEEEEEEE
T ss_pred             CeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCCCCceEEEEEE
Confidence            689999999999875321          1      12369999999999999999888888887753

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]

Probab=98.44  E-value=0.00015  Score=66.20  Aligned_cols=184  Identities=17%  Similarity=0.090  Sum_probs=93.9

Q ss_pred             CCCCCceEEEcCCCCeeEEEecC-CEEEEEEcCCCCeEEeeecCCC---ccccccCCCCCcccCCCcCCeeeEEEeCCCC
Q 019290           33 GVVGPESLAFDCNGEGPYVGVSD-GRILKWKAANSGWTEFATTAPH---RAREICDGSTNTTLEPLCGRPLGIKFNPVTC  108 (343)
Q Consensus        33 ~~~~p~~l~~d~~g~~l~~~~~~-g~i~~~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~  108 (343)
                      ++..|..+...++|. +.+.... |.+...................   ....+.+....+........++++++.  ++
T Consensus        65 gLe~p~~~~~lP~G~-~~v~er~~G~l~~i~~g~~~~~~~~~~~~~~~~~~~Gll~~al~~~fa~~~~~~~~~a~~--~~  141 (399)
T COG2133          65 GLEHPWGLARLPDGV-LLVTERPTGRLRLISDGGSASPPVSTVPIVLLRGQGGLLDIALSPDFAQGRLVYFGISEP--GG  141 (399)
T ss_pred             cccCchhheecCCce-EEEEccCCccEEEecCCCcccccccccceEEeccCCCccceEecccccccceeeeEEEee--cC
Confidence            556789999999995 4444333 6555443211110000000000   000000000111111223346777776  46


Q ss_pred             eEEEEeCCCeEEEEeCCCCeEE---EcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccc-----eeeeeecCCC
Q 019290          109 DLYIADAYFGLMVVGPNGGQAQ---QLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQY-----FMSIATGDRS  180 (343)
Q Consensus       109 ~l~v~~~~~gi~~~d~~~~~~~---~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~-----~~~~~~~~~~  180 (343)
                      .+|+++ ...+.+++....++.   .+..........+-..|++++ ||.||++..+..-...-+     ...+.+.. .
T Consensus       142 ~~~~~n-~~~~~~~~~g~~~l~~~~~i~~~lP~~~~H~g~~l~f~p-DG~Lyvs~G~~~~~~~aq~~~~~~Gk~~r~~-~  218 (399)
T COG2133         142 GLYVAN-RVAIGRLPGGDTKLSEPKVIFRGIPKGGHHFGGRLVFGP-DGKLYVTTGSNGDPALAQDNVSLAGKVLRID-R  218 (399)
T ss_pred             CceEEE-EEEEEEcCCCccccccccEEeecCCCCCCcCcccEEECC-CCcEEEEeCCCCCcccccCccccccceeeec-c
Confidence            778874 456777772222222   222222222246677899999 699999876541110000     00011111 2


Q ss_pred             ceEEEEeCCCCceEEeecCCCCcceeEEecCCCEEEEEEcCC
Q 019290          181 GRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESAT  222 (343)
Q Consensus       181 ~~v~~~d~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~  222 (343)
                      ..+...|......+.+..+.+.+.|++++|..+.||+++...
T Consensus       219 a~~~~~d~p~~~~~i~s~G~RN~qGl~w~P~tg~Lw~~e~g~  260 (399)
T COG2133         219 AGIIPADNPFPNSEIWSYGHRNPQGLAWHPVTGALWTTEHGP  260 (399)
T ss_pred             CcccccCCCCCCcceEEeccCCccceeecCCCCcEEEEecCC
Confidence            234555555555555666788899999999877799998665

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.43  E-value=0.00054  Score=64.29  Aligned_cols=142  Identities=15%  Similarity=0.118  Sum_probs=82.9

Q ss_pred             eeEEEeCCCCeEEEEeCC---CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCC-eEEEEeCCcccccccceeee
Q 019290           99 LGIKFNPVTCDLYIADAY---FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTG-IVYFTDSSIYFQRRQYFMSI  174 (343)
Q Consensus        99 ~gi~~~~~~~~l~v~~~~---~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg-~l~v~~~~~~~~~~~~~~~~  174 (343)
                      ....++++++.|+++...   ..|+.+|.++++.+.+....     ......++.+ || .++++...            
T Consensus       193 ~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~-----~~~~~~~~sp-Dg~~l~~~~~~------------  254 (417)
T TIGR02800       193 LSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFP-----GMNGAPAFSP-DGSKLAVSLSK------------  254 (417)
T ss_pred             ecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCC-----CCccceEECC-CCCEEEEEECC------------
Confidence            345567745566665433   24999999988766543211     1234567888 46 46665432            


Q ss_pred             eecCCCceEEEEeCCCCceEEeecCCCCcceeEEecCCCEEEEEEcCC--CeEEEEEccCccccccceeeecCCCCCCce
Q 019290          175 ATGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESAT--LKILRFWLQGERTTYTPQLFAEMPRFPDNI  252 (343)
Q Consensus       175 ~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i  252 (343)
                         .....||.++..++..+.+...........+++|++.++++....  ..||++++.+    ++.+.+..........
T Consensus       255 ---~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~----~~~~~l~~~~~~~~~~  327 (417)
T TIGR02800       255 ---DGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADG----GEVRRLTFRGGYNASP  327 (417)
T ss_pred             ---CCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCC----CCEEEeecCCCCccCe
Confidence               113469999988777666543332233557889999887765433  3688888765    2323332222223456


Q ss_pred             eeCCCCCEEEEec
Q 019290          253 KSDSKGEFWIAMN  265 (343)
Q Consensus       253 ~~d~~G~lwi~~~  265 (343)
                      .++++|+..+.+.
T Consensus       328 ~~spdg~~i~~~~  340 (417)
T TIGR02800       328 SWSPDGDLIAFVH  340 (417)
T ss_pred             EECCCCCEEEEEE
Confidence            7788886544443

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=98.31  E-value=0.0015  Score=60.36  Aligned_cols=186  Identities=15%  Similarity=0.130  Sum_probs=117.4

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      +...|...++|..+|.+..+|.|..|+..++.-..+..                  .....+..+|+.+. .+.++...+
T Consensus       322 ~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g------------------~~h~nqI~~~~~~~-~~~~~t~g~  382 (603)
T KOG0318|consen  322 SITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAG------------------KGHTNQIKGMAASE-SGELFTIGW  382 (603)
T ss_pred             ceeEEEEcCCCCEEEeeccCceEEEEecCCcccccccc------------------ccccceEEEEeecC-CCcEEEEec
Confidence            35688899999999999999999999987654333211                  12234567888876 678888767


Q ss_pred             CCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEE
Q 019290          116 YFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTV  195 (343)
Q Consensus       116 ~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~  195 (343)
                      .+.+.+++...+....-.....   ...|-++++.+.++.+.++..+                   .|..+.-.+ ....
T Consensus       383 Dd~l~~~~~~~~~~t~~~~~~l---g~QP~~lav~~d~~~avv~~~~-------------------~iv~l~~~~-~~~~  439 (603)
T KOG0318|consen  383 DDTLRVISLKDNGYTKSEVVKL---GSQPKGLAVLSDGGTAVVACIS-------------------DIVLLQDQT-KVSS  439 (603)
T ss_pred             CCeEEEEecccCcccccceeec---CCCceeEEEcCCCCEEEEEecC-------------------cEEEEecCC-ccee
Confidence            7778888876544332110111   1456789998832355554432                   344444222 2222


Q ss_pred             eecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEecc
Q 019290          196 MYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNS  266 (343)
Q Consensus       196 ~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~~  266 (343)
                      + .-...+.++|+++++....+.. .++.|++|.+.+... .+.....+..+.+..++.++||.++.++.-
T Consensus       440 ~-~~~y~~s~vAv~~~~~~vaVGG-~Dgkvhvysl~g~~l-~ee~~~~~h~a~iT~vaySpd~~yla~~Da  507 (603)
T KOG0318|consen  440 I-PIGYESSAVAVSPDGSEVAVGG-QDGKVHVYSLSGDEL-KEEAKLLEHRAAITDVAYSPDGAYLAAGDA  507 (603)
T ss_pred             e-ccccccceEEEcCCCCEEEEec-ccceEEEEEecCCcc-cceeeeecccCCceEEEECCCCcEEEEecc
Confidence            2 1224578999999998766654 567899999988543 222222223344667888999988877654

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=98.31  E-value=0.00063  Score=58.50  Aligned_cols=191  Identities=16%  Similarity=0.193  Sum_probs=113.0

Q ss_pred             eeEEEeCCCCeEEEEeCCC---eEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeee
Q 019290           99 LGIKFNPVTCDLYIADAYF---GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIA  175 (343)
Q Consensus        99 ~gi~~~~~~~~l~v~~~~~---gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~  175 (343)
                      -|+.+.. ++.||-++..-   .|.++|+++|++.........   .+-.++++-.  +++|.=+..             
T Consensus        48 QGL~~~~-~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~---~FgEGit~~~--d~l~qLTWk-------------  108 (264)
T PF05096_consen   48 QGLEFLD-DGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPR---YFGEGITILG--DKLYQLTWK-------------  108 (264)
T ss_dssp             EEEEEEE-TTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT-----EEEEEEET--TEEEEEESS-------------
T ss_pred             ccEEecC-CCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCcc---ccceeEEEEC--CEEEEEEec-------------
Confidence            4888865 78999996533   499999999987654332221   3556777775  699986654             


Q ss_pred             ecCCCceEEEEeCCCCceEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCC----Cc
Q 019290          176 TGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFP----DN  251 (343)
Q Consensus       176 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p----~~  251 (343)
                          .+..+.||.++-+...-..-...-.|++  .|++.||+++ .+.+|+.+|+..=.....+.+ . ..+.|    +.
T Consensus       109 ----~~~~f~yd~~tl~~~~~~~y~~EGWGLt--~dg~~Li~SD-GS~~L~~~dP~~f~~~~~i~V-~-~~g~pv~~LNE  179 (264)
T PF05096_consen  109 ----EGTGFVYDPNTLKKIGTFPYPGEGWGLT--SDGKRLIMSD-GSSRLYFLDPETFKEVRTIQV-T-DNGRPVSNLNE  179 (264)
T ss_dssp             ----SSEEEEEETTTTEEEEEEE-SSS--EEE--ECSSCEEEE--SSSEEEEE-TTT-SEEEEEE--E-ETTEE---EEE
T ss_pred             ----CCeEEEEccccceEEEEEecCCcceEEE--cCCCEEEEEC-CccceEEECCcccceEEEEEE-E-ECCEECCCcEe
Confidence                5678999987654432222223345666  5677888876 578999998754211111111 1 22222    22


Q ss_pred             eeeCCCCCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECC-CCCEEEEeeCC--------CCC---ccCCce
Q 019290          252 IKSDSKGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDV-NGNVVDVLDGN--------EGN---TLNSVS  319 (343)
Q Consensus       252 i~~d~~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~~~--------~~~---~~~~~~  319 (343)
                      +..- +|.||.--+.                        ...|+++|| +|++...+...        ...   ..+...
T Consensus       180 LE~i-~G~IyANVW~------------------------td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLN  234 (264)
T PF05096_consen  180 LEYI-NGKIYANVWQ------------------------TDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLN  234 (264)
T ss_dssp             EEEE-TTEEEEEETT------------------------SSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EE
T ss_pred             EEEE-cCEEEEEeCC------------------------CCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeE
Confidence            3332 6999999887                        458899999 58887766310        010   012223


Q ss_pred             eEEE--eCCEEEEecCCCCeEEEEc
Q 019290          320 EVQE--YGEYLYTGSSVQPYVVVIK  342 (343)
Q Consensus       320 ~~~~--~~g~l~i~~~~~~~i~~~~  342 (343)
                      ++.-  ..+++|+++..=+++..++
T Consensus       235 GIAyd~~~~~l~vTGK~Wp~lyeV~  259 (264)
T PF05096_consen  235 GIAYDPETDRLFVTGKLWPKLYEVK  259 (264)
T ss_dssp             EEEEETTTTEEEEEETT-SEEEEEE
T ss_pred             eEeEeCCCCEEEEEeCCCCceEEEE
Confidence            3333  3789999999888887764

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=98.31  E-value=0.0018  Score=56.04  Aligned_cols=218  Identities=14%  Similarity=0.127  Sum_probs=127.1

Q ss_pred             ccccccccCCCCCCCceEEEcCCCC-eeEEEe-cCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeee
Q 019290           23 SKSYQQLQLPGVVGPESLAFDCNGE-GPYVGV-SDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLG  100 (343)
Q Consensus        23 ~~~~~~~~~~~~~~p~~l~~d~~g~-~l~~~~-~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g  100 (343)
                      .++.+.+..+. ..++.+++-..-+ .++.++ .+..|..++..+.+..++..                   .....+++
T Consensus        46 g~~~~ti~skk-yG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~-------------------GH~~~V~s  105 (311)
T KOG1446|consen   46 GKQVKTINSKK-YGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFP-------------------GHKKRVNS  105 (311)
T ss_pred             CceeeEeeccc-ccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcC-------------------CCCceEEE
Confidence            44555555552 2466666665444 444333 35556666766555444421                   22235788


Q ss_pred             EEEeCCCCeEEEEeCCC-eEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCC
Q 019290          101 IKFNPVTCDLYIADAYF-GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDR  179 (343)
Q Consensus       101 i~~~~~~~~l~v~~~~~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~  179 (343)
                      |...| .+..+++...+ .|+.+|.+..+-+.+...      ....-.|+||. |-+++...+                 
T Consensus       106 L~~sP-~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~------~~~pi~AfDp~-GLifA~~~~-----------------  160 (311)
T KOG1446|consen  106 LSVSP-KDDTFLSSSLDKTVRLWDLRVKKCQGLLNL------SGRPIAAFDPE-GLIFALANG-----------------  160 (311)
T ss_pred             EEecC-CCCeEEecccCCeEEeeEecCCCCceEEec------CCCcceeECCC-CcEEEEecC-----------------
Confidence            99999 56666665555 589999885544433221      22345689994 877775543                 


Q ss_pred             CceEEEEeCCC---CceEEee---cCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCcee
Q 019290          180 SGRLLKYDPLK---KNVTVMY---NGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIK  253 (343)
Q Consensus       180 ~~~v~~~d~~~---~~~~~~~---~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~  253 (343)
                      ...|-.||...   |-...+.   .....-+.+.|++||+.+.++. ..+.++.+|.-.......+.........|-+-+
T Consensus       161 ~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT-~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~  239 (311)
T KOG1446|consen  161 SELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLST-NASFIYLLDAFDGTVKSTFSGYPNAGNLPLSAT  239 (311)
T ss_pred             CCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEe-CCCcEEEEEccCCcEeeeEeeccCCCCcceeEE
Confidence            33566666531   2222221   2234457899999999888775 467788877432111122222222223565667


Q ss_pred             eCCCCCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECC-CCCEEEEeeCC
Q 019290          254 SDSKGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDV-NGNVVDVLDGN  310 (343)
Q Consensus       254 ~d~~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~~~  310 (343)
                      +.|||++.+++.+                        .+.|..++. .|+.+.....|
T Consensus       240 ftPds~Fvl~gs~------------------------dg~i~vw~~~tg~~v~~~~~~  273 (311)
T KOG1446|consen  240 FTPDSKFVLSGSD------------------------DGTIHVWNLETGKKVAVLRGP  273 (311)
T ss_pred             ECCCCcEEEEecC------------------------CCcEEEEEcCCCcEeeEecCC
Confidence            8899998888776                        456777775 57777776654

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.27  E-value=0.0017  Score=60.58  Aligned_cols=220  Identities=12%  Similarity=0.036  Sum_probs=118.0

Q ss_pred             CeeEEEecCCEEEEEEcCCCCeE-EeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCCCeEEEEeCC
Q 019290           47 EGPYVGVSDGRILKWKAANSGWT-EFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFGLMVVGPN  125 (343)
Q Consensus        47 ~~l~~~~~~g~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~~gi~~~d~~  125 (343)
                      ..+|+...++.|+.+|.++++.. .+....  +           .  ..........+.  ++.++++.....++.+|.+
T Consensus       161 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~~--~-----------~--~~~~~~~sP~v~--~~~v~~~~~~g~v~a~d~~  223 (394)
T PRK11138        161 GLVLVHTSNGMLQALNESDGAVKWTVNLDV--P-----------S--LTLRGESAPATA--FGGAIVGGDNGRVSAVLME  223 (394)
T ss_pred             CEEEEECCCCEEEEEEccCCCEeeeecCCC--C-----------c--ccccCCCCCEEE--CCEEEEEcCCCEEEEEEcc
Confidence            34777788899999999887532 111000  0           0  000000111233  4678888544559999999


Q ss_pred             CCeEEEcccccCC---CCc---c-CcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEeec
Q 019290          126 GGQAQQLASSAGG---IPF---R-FTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYN  198 (343)
Q Consensus       126 ~~~~~~~~~~~~~---~~~---~-~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~  198 (343)
                      +|+..........   ...   . ....-++.  ++.+|++..                  .+.++.+|..+|+..-- .
T Consensus       224 ~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~--~~~vy~~~~------------------~g~l~ald~~tG~~~W~-~  282 (394)
T PRK11138        224 QGQLIWQQRISQPTGATEIDRLVDVDTTPVVV--GGVVYALAY------------------NGNLVALDLRSGQIVWK-R  282 (394)
T ss_pred             CChhhheeccccCCCccchhcccccCCCcEEE--CCEEEEEEc------------------CCeEEEEECCCCCEEEe-e
Confidence            8875432211110   000   0 01122233  378888653                  45799999988875321 1


Q ss_pred             CCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeec--CC-CCCCceeeCCCCCEEEEeccCCCcccccc
Q 019290          199 GLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAE--MP-RFPDNIKSDSKGEFWIAMNSARGKIESNK  275 (343)
Q Consensus       199 ~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~-~~p~~i~~d~~G~lwi~~~~~~~~~~~~~  275 (343)
                      ....+...++  +++.+|+.. .++.++.++..+    ++. ....  .. ......++ .+|.+|+++..         
T Consensus       283 ~~~~~~~~~~--~~~~vy~~~-~~g~l~ald~~t----G~~-~W~~~~~~~~~~~sp~v-~~g~l~v~~~~---------  344 (394)
T PRK11138        283 EYGSVNDFAV--DGGRIYLVD-QNDRVYALDTRG----GVE-LWSQSDLLHRLLTAPVL-YNGYLVVGDSE---------  344 (394)
T ss_pred             cCCCccCcEE--ECCEEEEEc-CCCeEEEEECCC----CcE-EEcccccCCCcccCCEE-ECCEEEEEeCC---------
Confidence            1222223333  356788876 468899999764    221 2211  11 11111222 36889998765         


Q ss_pred             ccccccccCCCcccCCCeEEEECC-CCCEEEEeeCCCCCccCCceeEEEeCCEEEEecCCCCeEEEEc
Q 019290          276 KTAFCEETAKPWFLRDPVGVKFDV-NGNVVDVLDGNEGNTLNSVSEVQEYGEYLYTGSSVQPYVVVIK  342 (343)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~~~~i~~~~  342 (343)
                                      +.++++|+ +|+.+........   ...+.....+++||+++... .++.++
T Consensus       345 ----------------G~l~~ld~~tG~~~~~~~~~~~---~~~s~P~~~~~~l~v~t~~G-~l~~~~  392 (394)
T PRK11138        345 ----------------GYLHWINREDGRFVAQQKVDSS---GFLSEPVVADDKLLIQARDG-TVYAIT  392 (394)
T ss_pred             ----------------CEEEEEECCCCCEEEEEEcCCC---cceeCCEEECCEEEEEeCCc-eEEEEe
Confidence                            47888997 6887766654322   12333344588999997643 455443

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.27  E-value=0.00025  Score=62.22  Aligned_cols=177  Identities=15%  Similarity=0.119  Sum_probs=105.9

Q ss_pred             cccccCC-CCCCCceEEEcCCCCeeEEEec-----CCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCee
Q 019290           26 YQQLQLP-GVVGPESLAFDCNGEGPYVGVS-----DGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPL   99 (343)
Q Consensus        26 ~~~~~~~-~~~~p~~l~~d~~g~~l~~~~~-----~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~   99 (343)
                      .+.+..| +-..=-.-++++||+.||+..+     .|.|-.||... ...++.                 .+......|+
T Consensus        41 ~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~-~~~ri~-----------------E~~s~GIGPH  102 (305)
T PF07433_consen   41 LQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR-GYRRIG-----------------EFPSHGIGPH  102 (305)
T ss_pred             eeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC-CcEEEe-----------------EecCCCcChh
Confidence            4445445 2122225678999998887633     46788888873 333331                 1123445689


Q ss_pred             eEEEeCCCCeEEEEeCC------------------CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeC
Q 019290          100 GIKFNPVTCDLYIADAY------------------FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDS  161 (343)
Q Consensus       100 gi~~~~~~~~l~v~~~~------------------~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~  161 (343)
                      -+.+.+++.+|.|++.+                  ..|..+|..+|++..-..........++..++++. +|.+|++..
T Consensus       103 el~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~-~G~V~~a~Q  181 (305)
T PF07433_consen  103 ELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDG-DGTVAFAMQ  181 (305)
T ss_pred             hEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecC-CCcEEEEEe
Confidence            99999844489998521                  24666667777654332232233346788999999 699999875


Q ss_pred             CcccccccceeeeeecCCCceEEEEeCCCCceEEeec------CC-CCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290          162 SIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYN------GL-SFPNGVALSNNNSFLLLAESATLKILRFWLQG  232 (343)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~------~~-~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~  232 (343)
                      ...-        .  ....--|..++.. ..++.+..      .+ ...-.|+++.+++.+.++...++++.+|+..+
T Consensus       182 ~qg~--------~--~~~~PLva~~~~g-~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~t  248 (305)
T PF07433_consen  182 YQGD--------P--GDAPPLVALHRRG-GALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAAT  248 (305)
T ss_pred             cCCC--------C--CccCCeEEEEcCC-CcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCC
Confidence            4210        0  0011224445433 22332211      11 22457899999988889988999999998665

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=98.27  E-value=6e-06  Score=58.46  Aligned_cols=82  Identities=26%  Similarity=0.396  Sum_probs=59.1

Q ss_pred             ceeEEeCCCCeEEEEeCCcccccccceeee--eecCCCceEEEEeCCCCceEEeecCCCCcceeEEecCCCEEEEEEcCC
Q 019290          145 NDLDIDPNTGIVYFTDSSIYFQRRQYFMSI--ATGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESAT  222 (343)
Q Consensus       145 ~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~--~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~  222 (343)
                      |+|+.-.. +++|+++.+..-..  ++..+  .-+...+.|..||+.  +.+....++..||||+++++++.|||++...
T Consensus         1 NDIvavG~-~sFy~TNDhyf~~~--~l~~lE~~l~~~~~~Vvyyd~~--~~~~va~g~~~aNGI~~s~~~k~lyVa~~~~   75 (86)
T PF01731_consen    1 NDIVAVGP-DSFYVTNDHYFTDP--FLRLLETYLGLPWGNVVYYDGK--EVKVVASGFSFANGIAISPDKKYLYVASSLA   75 (86)
T ss_pred             CCEEEECc-CcEEEECchhhCcH--HHHHHHHHhcCCCceEEEEeCC--EeEEeeccCCCCceEEEcCCCCEEEEEeccC
Confidence            35554442 79999988753221  11111  112346778889874  6777788899999999999999999999999


Q ss_pred             CeEEEEEcc
Q 019290          223 LKILRFWLQ  231 (343)
Q Consensus       223 ~~i~~~~~~  231 (343)
                      +.|.+|..+
T Consensus        76 ~~I~vy~~~   84 (86)
T PF01731_consen   76 HSIHVYKRH   84 (86)
T ss_pred             CeEEEEEec
Confidence            999999864

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.22  E-value=0.00065  Score=61.95  Aligned_cols=153  Identities=14%  Similarity=0.181  Sum_probs=87.6

Q ss_pred             CCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCe----eeEEEeCCCCeEEEEeCCCeE
Q 019290           44 CNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRP----LGIKFNPVTCDLYIADAYFGL  119 (343)
Q Consensus        44 ~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p----~gi~~~~~~~~l~v~~~~~gi  119 (343)
                      .||+.+.+. +.|.||.|||.+.++..+....+...         +...+....|    ...++.  .|.++...+....
T Consensus       276 sDGkrIvFq-~~GdIylydP~td~lekldI~lpl~r---------k~k~~k~~~pskyledfa~~--~Gd~ia~VSRGka  343 (668)
T COG4946         276 SDGKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDR---------KKKQPKFVNPSKYLEDFAVV--NGDYIALVSRGKA  343 (668)
T ss_pred             CCCcEEEEe-cCCcEEEeCCCcCcceeeecCCcccc---------ccccccccCHHHhhhhhccC--CCcEEEEEecCcE
Confidence            455544443 56679999999877766643311100         0000111111    122233  2333322222236


Q ss_pred             EEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEeecC
Q 019290          120 MVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNG  199 (343)
Q Consensus       120 ~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~  199 (343)
                      +.+++..+-..++... .+   ..-..+..|++  .+.+++..                 ...|-.||.++++++++..+
T Consensus       344 Fi~~~~~~~~iqv~~~-~~---VrY~r~~~~~e--~~vigt~d-----------------gD~l~iyd~~~~e~kr~e~~  400 (668)
T COG4946         344 FIMRPWDGYSIQVGKK-GG---VRYRRIQVDPE--GDVIGTND-----------------GDKLGIYDKDGGEVKRIEKD  400 (668)
T ss_pred             EEECCCCCeeEEcCCC-Cc---eEEEEEccCCc--ceEEeccC-----------------CceEEEEecCCceEEEeeCC
Confidence            7777765544433211 11   12234445552  44454432                 23577888888999999999


Q ss_pred             CCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290          200 LSFPNGVALSNNNSFLLLAESATLKILRFWLQG  232 (343)
Q Consensus       200 ~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~  232 (343)
                      +.....+.++++|+.+.+++ ....||+++++.
T Consensus       401 lg~I~av~vs~dGK~~vvaN-dr~el~vididn  432 (668)
T COG4946         401 LGNIEAVKVSPDGKKVVVAN-DRFELWVIDIDN  432 (668)
T ss_pred             ccceEEEEEcCCCcEEEEEc-CceEEEEEEecC
Confidence            99999999999999887775 478999999986

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.21  E-value=0.0011  Score=63.05  Aligned_cols=153  Identities=18%  Similarity=0.246  Sum_probs=104.9

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCC-C-eEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEE
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANS-G-WTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIA  113 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~  113 (343)
                      ...++++.++|..+..+..+..|..||.... . +..+.                    .....+..++|++ ++++.+.
T Consensus       205 ~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~--------------------gH~~~v~~~~f~p-~g~~i~S  263 (456)
T KOG0266|consen  205 GVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLK--------------------GHSTYVTSVAFSP-DGNLLVS  263 (456)
T ss_pred             ceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEec--------------------CCCCceEEEEecC-CCCEEEE
Confidence            4779999999997888899999999998332 2 22221                    2233468899999 4555554


Q ss_pred             eCCCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCc
Q 019290          114 DAYFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKN  192 (343)
Q Consensus       114 ~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~  192 (343)
                      ...++ ++.+|.++++.........    ..++.+++.+ +|++.++...                 .+.|..||..++.
T Consensus       264 gs~D~tvriWd~~~~~~~~~l~~hs----~~is~~~f~~-d~~~l~s~s~-----------------d~~i~vwd~~~~~  321 (456)
T KOG0266|consen  264 GSDDGTVRIWDVRTGECVRKLKGHS----DGISGLAFSP-DGNLLVSASY-----------------DGTIRVWDLETGS  321 (456)
T ss_pred             ecCCCcEEEEeccCCeEEEeeeccC----CceEEEEECC-CCCEEEEcCC-----------------CccEEEEECCCCc
Confidence            44555 9999999877655433322    3578899999 5877775543                 5678889998877


Q ss_pred             eE--EeecCCCC---cceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290          193 VT--VMYNGLSF---PNGVALSNNNSFLLLAESATLKILRFWLQG  232 (343)
Q Consensus       193 ~~--~~~~~~~~---~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~  232 (343)
                      ..  ........   ...+++++++.+++.. ..++.+..|++..
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~-~~d~~~~~w~l~~  365 (456)
T KOG0266|consen  322 KLCLKLLSGAENSAPVTSVQFSPNGKYLLSA-SLDRTLKLWDLRS  365 (456)
T ss_pred             eeeeecccCCCCCCceeEEEECCCCcEEEEe-cCCCeEEEEEccC
Confidence            32  22223233   3778899999877665 4567888888874

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.17  E-value=0.0027  Score=59.87  Aligned_cols=183  Identities=14%  Similarity=0.117  Sum_probs=99.2

Q ss_pred             ceEEEcCCCCe---eEEEecC--CEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEE
Q 019290           38 ESLAFDCNGEG---PYVGVSD--GRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYI  112 (343)
Q Consensus        38 ~~l~~d~~g~~---l~~~~~~--g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v  112 (343)
                      .+-.+.|||+.   +|++..+  .+||..+..+++...+...                    .+......+++++..|.+
T Consensus       188 ~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~--------------------~g~~~~p~wSPDG~~Laf  247 (428)
T PRK01029        188 ITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILAL--------------------QGNQLMPTFSPRKKLLAF  247 (428)
T ss_pred             ccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecC--------------------CCCccceEECCCCCEEEE
Confidence            35578999863   3455443  4799999888766655321                    111234567774446665


Q ss_pred             EeCCC---eEEE--EeCCC---CeEEEcccccCCCCccCcceeEEeCCCCe-EEEEeCCcccccccceeeeeecCCCceE
Q 019290          113 ADAYF---GLMV--VGPNG---GQAQQLASSAGGIPFRFTNDLDIDPNTGI-VYFTDSSIYFQRRQYFMSIATGDRSGRL  183 (343)
Q Consensus       113 ~~~~~---gi~~--~d~~~---~~~~~~~~~~~~~~~~~~~~i~~d~~dg~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v  183 (343)
                      +....   .++.  ++.++   ++.+.+.....    ......++.| ||+ |+++...               .+...|
T Consensus       248 ~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~----~~~~~p~wSP-DG~~Laf~s~~---------------~g~~~l  307 (428)
T PRK01029        248 ISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAF----GTQGNPSFSP-DGTRLVFVSNK---------------DGRPRI  307 (428)
T ss_pred             EECCCCCcceeEEEeecccCCCCcceEeecCCC----CCcCCeEECC-CCCEEEEEECC---------------CCCceE
Confidence            53222   2444  45543   23333321110    1223567888 565 5553321               112358


Q ss_pred             EEEeCC--CCceEEeecCCCCcceeEEecCCCEEEEEEcC--CCeEEEEEccCccccccceeeecCCCCCCceeeCCCCC
Q 019290          184 LKYDPL--KKNVTVMYNGLSFPNGVALSNNNSFLLLAESA--TLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGE  259 (343)
Q Consensus       184 ~~~d~~--~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~  259 (343)
                      |+++.+  ++..+.+..........+++|||+.++++...  ...|+++++++    ++.+.+.............+||+
T Consensus       308 y~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~----g~~~~Lt~~~~~~~~p~wSpDG~  383 (428)
T PRK01029        308 YIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLAT----GRDYQLTTSPENKESPSWAIDSL  383 (428)
T ss_pred             EEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCC----CCeEEccCCCCCccceEECCCCC
Confidence            888654  23344443332334567899999988776543  34799999876    33344433222345567788886


Q ss_pred             -EEEEe
Q 019290          260 -FWIAM  264 (343)
Q Consensus       260 -lwi~~  264 (343)
                       |++..
T Consensus       384 ~L~f~~  389 (428)
T PRK01029        384 HLVYSA  389 (428)
T ss_pred             EEEEEE
Confidence             44443

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=98.17  E-value=0.00038  Score=63.03  Aligned_cols=171  Identities=11%  Similarity=0.087  Sum_probs=83.8

Q ss_pred             EEEcCCCCeeEEEec---CCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCC
Q 019290           40 LAFDCNGEGPYVGVS---DGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAY  116 (343)
Q Consensus        40 l~~d~~g~~l~~~~~---~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~  116 (343)
                      =++.++|+.+.+...   ..++|.+|..++++.++...+                   .....|..+.+.++.+|.....
T Consensus        41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~-------------------g~~~~g~~~s~~~~~~~Yv~~~  101 (386)
T PF14583_consen   41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGP-------------------GDNTFGGFLSPDDRALYYVKNG  101 (386)
T ss_dssp             --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS--------------------B-TTT-EE-TTSSEEEEEETT
T ss_pred             CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCC-------------------CCCccceEEecCCCeEEEEECC
Confidence            345678875554332   457999999999888875311                   1112355666656676544356


Q ss_pred             CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcc--cc-c--ccceeeeeecCCCceEEEEeCCCC
Q 019290          117 FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIY--FQ-R--RQYFMSIATGDRSGRLLKYDPLKK  191 (343)
Q Consensus       117 ~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~--~~-~--~~~~~~~~~~~~~~~v~~~d~~~~  191 (343)
                      ..|+++|+++.+.+.+......-  ...-...++. |++.+++.....  +. .  +++.....+..+..+|+++|..+|
T Consensus       102 ~~l~~vdL~T~e~~~vy~~p~~~--~g~gt~v~n~-d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG  178 (386)
T PF14583_consen  102 RSLRRVDLDTLEERVVYEVPDDW--KGYGTWVANS-DCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTG  178 (386)
T ss_dssp             TEEEEEETTT--EEEEEE--TTE--EEEEEEEE-T-TSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT-
T ss_pred             CeEEEEECCcCcEEEEEECCccc--ccccceeeCC-CccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCC
Confidence            78999999998877665443321  1111223355 577766543211  11 0  122233445555678999999999


Q ss_pred             ceEEeecCCCCcceeEEecCCCE-EEEEEcC-----CCeEEEEEccC
Q 019290          192 NVTVMYNGLSFPNGVALSNNNSF-LLLAESA-----TLKILRFWLQG  232 (343)
Q Consensus       192 ~~~~~~~~~~~~~~i~~~~d~~~-lyv~~~~-----~~~i~~~~~~~  232 (343)
                      +.+.+...-....=+.++|.... +.++...     ..+||.++.++
T Consensus       179 ~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg  225 (386)
T PF14583_consen  179 ERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDG  225 (386)
T ss_dssp             -EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS
T ss_pred             ceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCC
Confidence            98877654443344445553322 2222222     46899999877

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.16  E-value=0.006  Score=57.27  Aligned_cols=136  Identities=14%  Similarity=0.099  Sum_probs=81.0

Q ss_pred             eEEEeCCCCe-EEEEeCC---CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCC-eEEEEeCCcccccccceeee
Q 019290          100 GIKFNPVTCD-LYIADAY---FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTG-IVYFTDSSIYFQRRQYFMSI  174 (343)
Q Consensus       100 gi~~~~~~~~-l~v~~~~---~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg-~l~v~~~~~~~~~~~~~~~~  174 (343)
                      ...++++++. +++....   ..|+.+|+.+++.+.+... .+    ......+.| || .+.++...            
T Consensus       192 ~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~-~g----~~~~~~~SP-DG~~la~~~~~------------  253 (419)
T PRK04043        192 FPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASS-QG----MLVVSDVSK-DGSKLLLTMAP------------  253 (419)
T ss_pred             eEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecC-CC----cEEeeEECC-CCCEEEEEEcc------------
Confidence            4556774443 6665443   2399999999988777532 11    112345677 45 56665432            


Q ss_pred             eecCCCceEEEEeCCCCceEEeecCCCCcceeEEecCCCEEEEEEcCC--CeEEEEEccCccccccceeeecCCCCCCce
Q 019290          175 ATGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESAT--LKILRFWLQGERTTYTPQLFAEMPRFPDNI  252 (343)
Q Consensus       175 ~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i  252 (343)
                         .+...||.+|.++++.+.+...........++|||+.++++....  ..|+++++++    ++.+.+... +. ...
T Consensus       254 ---~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~----g~~~rlt~~-g~-~~~  324 (419)
T PRK04043        254 ---KGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNS----GSVEQVVFH-GK-NNS  324 (419)
T ss_pred             ---CCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCC----CCeEeCccC-CC-cCc
Confidence               114579999988888776653322233456899999998876443  3799999876    333333221 11 124


Q ss_pred             eeCCCCCEEE
Q 019290          253 KSDSKGEFWI  262 (343)
Q Consensus       253 ~~d~~G~lwi  262 (343)
                      ..++||+..+
T Consensus       325 ~~SPDG~~Ia  334 (419)
T PRK04043        325 SVSTYKNYIV  334 (419)
T ss_pred             eECCCCCEEE
Confidence            6788886433

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.14  E-value=0.002  Score=59.60  Aligned_cols=23  Identities=22%  Similarity=0.371  Sum_probs=17.1

Q ss_pred             CCeeEEEecCCEEEEEEcCCCCe
Q 019290           46 GEGPYVGVSDGRILKWKAANSGW   68 (343)
Q Consensus        46 g~~l~~~~~~g~i~~~d~~~~~~   68 (343)
                      ++.+|++..++.++.+|..+++.
T Consensus        65 ~~~v~v~~~~g~v~a~d~~tG~~   87 (377)
T TIGR03300        65 GGKVYAADADGTVVALDAETGKR   87 (377)
T ss_pred             CCEEEEECCCCeEEEEEccCCcE
Confidence            34588888888899988776653

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=98.14  E-value=0.0035  Score=53.52  Aligned_cols=190  Identities=9%  Similarity=0.121  Sum_probs=116.2

Q ss_pred             eeeEEEeCCCCeEEEEeCCCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeee
Q 019290           98 PLGIKFNPVTCDLYIADAYFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIAT  176 (343)
Q Consensus        98 p~gi~~~~~~~~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~  176 (343)
                      ..++.+.+ +++..++...++ ++.+|+.+|+.........    .-+.++++++ |++-.++.+.              
T Consensus        66 v~dv~~s~-dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~----~dVlsva~s~-dn~qivSGSr--------------  125 (315)
T KOG0279|consen   66 VSDVVLSS-DGNFALSASWDGTLRLWDLATGESTRRFVGHT----KDVLSVAFST-DNRQIVSGSR--------------  125 (315)
T ss_pred             ecceEEcc-CCceEEeccccceEEEEEecCCcEEEEEEecC----CceEEEEecC-CCceeecCCC--------------
Confidence            45677787 666666645566 8889999986555433221    3467889999 5888775543              


Q ss_pred             cCCCceEEEEeCCCCceEEeecC--CCCcceeEEecCC-CEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCcee
Q 019290          177 GDRSGRLLKYDPLKKNVTVMYNG--LSFPNGVALSNNN-SFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIK  253 (343)
Q Consensus       177 ~~~~~~v~~~d~~~~~~~~~~~~--~~~~~~i~~~~d~-~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~  253 (343)
                         ...+-.++..+.-.-.+..+  -.-.+.++|+|.. +-.+++...++.+.+|++++-..   ...+....+...-++
T Consensus       126 ---DkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l---~~~~~gh~~~v~t~~  199 (315)
T KOG0279|consen  126 ---DKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQL---RTTFIGHSGYVNTVT  199 (315)
T ss_pred             ---cceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcch---hhccccccccEEEEE
Confidence               33455666553333233332  2336778899886 44555666788999999876322   011112233455678


Q ss_pred             eCCCCCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECC-CCCEEEEeeCCCCCccCCceeEEEeCCEEEEec
Q 019290          254 SDSKGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDV-NGNVVDVLDGNEGNTLNSVSEVQEYGEYLYTGS  332 (343)
Q Consensus       254 ~d~~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~  332 (343)
                      +++||.+.+....                        .+.++-.|- .++-++.+..     ...+..+....++.|+.-
T Consensus       200 vSpDGslcasGgk------------------------dg~~~LwdL~~~k~lysl~a-----~~~v~sl~fspnrywL~~  250 (315)
T KOG0279|consen  200 VSPDGSLCASGGK------------------------DGEAMLWDLNEGKNLYSLEA-----FDIVNSLCFSPNRYWLCA  250 (315)
T ss_pred             ECCCCCEEecCCC------------------------CceEEEEEccCCceeEeccC-----CCeEeeEEecCCceeEee
Confidence            8999998877544                        335555665 4555554432     345667777788888776


Q ss_pred             CCCCeEEEEc
Q 019290          333 SVQPYVVVIK  342 (343)
Q Consensus       333 ~~~~~i~~~~  342 (343)
                      .-..+|-..+
T Consensus       251 at~~sIkIwd  260 (315)
T KOG0279|consen  251 ATATSIKIWD  260 (315)
T ss_pred             ccCCceEEEe
Confidence            6666665443

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.14  E-value=0.0017  Score=60.07  Aligned_cols=173  Identities=16%  Similarity=0.082  Sum_probs=93.0

Q ss_pred             CCeEEEEeCCCeEEEEeCCCCeEEEcccccC--CC-Cc----cCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCC
Q 019290          107 TCDLYIADAYFGLMVVGPNGGQAQQLASSAG--GI-PF----RFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDR  179 (343)
Q Consensus       107 ~~~l~v~~~~~gi~~~d~~~~~~~~~~~~~~--~~-~~----~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~  179 (343)
                      ++.++++.....++.+|+++|+...-.....  +. ..    .......++  ++.+|++..                  
T Consensus       190 ~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~--~~~vy~~~~------------------  249 (377)
T TIGR03300       190 DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVD--GGQVYAVSY------------------  249 (377)
T ss_pred             CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEE--CCEEEEEEc------------------
Confidence            3567777544458889988887543211110  00 00    001122233  368888553                  


Q ss_pred             CceEEEEeCCCCceEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCC-CCCceeeCCCC
Q 019290          180 SGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPR-FPDNIKSDSKG  258 (343)
Q Consensus       180 ~~~v~~~d~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~p~~i~~d~~G  258 (343)
                      .+.++.+|.++|+..--.. .......++  +++.+|+.. .++.|+.++......+-+..   ...+ .....++ .++
T Consensus       250 ~g~l~a~d~~tG~~~W~~~-~~~~~~p~~--~~~~vyv~~-~~G~l~~~d~~tG~~~W~~~---~~~~~~~ssp~i-~g~  321 (377)
T TIGR03300       250 QGRVAALDLRSGRVLWKRD-ASSYQGPAV--DDNRLYVTD-ADGVVVALDRRSGSELWKND---ELKYRQLTAPAV-VGG  321 (377)
T ss_pred             CCEEEEEECCCCcEEEeec-cCCccCceE--eCCEEEEEC-CCCeEEEEECCCCcEEEccc---cccCCccccCEE-ECC
Confidence            4579999998887543221 122223333  356788875 57899999976421101110   1111 0111222 256


Q ss_pred             CEEEEeccCCCccccccccccccccCCCcccCCCeEEEECC-CCCEEEEeeCCCCCccCCceeEEEeCCEEEEecCCC
Q 019290          259 EFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDV-NGNVVDVLDGNEGNTLNSVSEVQEYGEYLYTGSSVQ  335 (343)
Q Consensus       259 ~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~~  335 (343)
                      .+++++..                         +.|+++|+ +|+.+..+..+..   ...+.....+++||+++.+.
T Consensus       322 ~l~~~~~~-------------------------G~l~~~d~~tG~~~~~~~~~~~---~~~~sp~~~~~~l~v~~~dG  371 (377)
T TIGR03300       322 YLVVGDFE-------------------------GYLHWLSREDGSFVARLKTDGS---GIASPPVVVGDGLLVQTRDG  371 (377)
T ss_pred             EEEEEeCC-------------------------CEEEEEECCCCCEEEEEEcCCC---ccccCCEEECCEEEEEeCCc
Confidence            78888654                         47889998 5888777664332   12333344578899888753

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PLN00181 protein SPA1-RELATED; Provisional

Probab=98.13  E-value=0.0069  Score=61.84  Aligned_cols=161  Identities=12%  Similarity=0.016  Sum_probs=92.2

Q ss_pred             CceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCe-EEEEeC
Q 019290           37 PESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCD-LYIADA  115 (343)
Q Consensus        37 p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~-l~v~~~  115 (343)
                      ..+++++++|+.+.++..++.|..|+..+.......  ...+.         .. ........++++++..+. |..+ .
T Consensus       486 V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~--~~~~~---------~~-~~~~~~v~~l~~~~~~~~~las~-~  552 (793)
T PLN00181        486 VCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRD--IHYPV---------VE-LASRSKLSGICWNSYIKSQVASS-N  552 (793)
T ss_pred             EEEEEECCCCCEEEEEeCCCEEEEEECCcccccccc--cccce---------EE-ecccCceeeEEeccCCCCEEEEE-e
Confidence            568999999997778888999999986431100000  00000         00 001123456777653344 4444 3


Q ss_pred             CCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceE
Q 019290          116 YFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVT  194 (343)
Q Consensus       116 ~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~  194 (343)
                      .+| |..+|.++++........    ...+.++++++.++.++++...                 .+.|..||..++...
T Consensus       553 ~Dg~v~lWd~~~~~~~~~~~~H----~~~V~~l~~~p~~~~~L~Sgs~-----------------Dg~v~iWd~~~~~~~  611 (793)
T PLN00181        553 FEGVVQVWDVARSQLVTEMKEH----EKRVWSIDYSSADPTLLASGSD-----------------DGSVKLWSINQGVSI  611 (793)
T ss_pred             CCCeEEEEECCCCeEEEEecCC----CCCEEEEEEcCCCCCEEEEEcC-----------------CCEEEEEECCCCcEE
Confidence            445 888898876543322211    1357889998634666665543                 456888887665543


Q ss_pred             EeecCCCCcceeEEec-CCCEEEEEEcCCCeEEEEEccC
Q 019290          195 VMYNGLSFPNGVALSN-NNSFLLLAESATLKILRFWLQG  232 (343)
Q Consensus       195 ~~~~~~~~~~~i~~~~-d~~~lyv~~~~~~~i~~~~~~~  232 (343)
                      ...........+.+.+ ++. .+++...++.|..|++..
T Consensus       612 ~~~~~~~~v~~v~~~~~~g~-~latgs~dg~I~iwD~~~  649 (793)
T PLN00181        612 GTIKTKANICCVQFPSESGR-SLAFGSADHKVYYYDLRN  649 (793)
T ss_pred             EEEecCCCeEEEEEeCCCCC-EEEEEeCCCeEEEEECCC
Confidence            2222223345666644 455 455666789999999864

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.13  E-value=0.0025  Score=54.72  Aligned_cols=174  Identities=15%  Similarity=0.155  Sum_probs=94.2

Q ss_pred             EEcCCCCeeEEEecCCEEEEEEcCCCCeE-EeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCCCeE
Q 019290           41 AFDCNGEGPYVGVSDGRILKWKAANSGWT-EFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFGL  119 (343)
Q Consensus        41 ~~d~~g~~l~~~~~~g~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~~gi  119 (343)
                      ....++. +|+...++.|+.+|..+++.. .+.. .                 .....+  ....  ++.+|++.....+
T Consensus        32 ~~~~~~~-v~~~~~~~~l~~~d~~tG~~~W~~~~-~-----------------~~~~~~--~~~~--~~~v~v~~~~~~l   88 (238)
T PF13360_consen   32 AVPDGGR-VYVASGDGNLYALDAKTGKVLWRFDL-P-----------------GPISGA--PVVD--GGRVYVGTSDGSL   88 (238)
T ss_dssp             EEEETTE-EEEEETTSEEEEEETTTSEEEEEEEC-S-----------------SCGGSG--EEEE--TTEEEEEETTSEE
T ss_pred             EEEeCCE-EEEEcCCCEEEEEECCCCCEEEEeec-c-----------------ccccce--eeec--ccccccccceeee
Confidence            3434445 888889999999999776532 2211 0                 010011  2233  6889998655579


Q ss_pred             EEEeCCCCeEEEcc-ccc-CCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEee
Q 019290          120 MVVGPNGGQAQQLA-SSA-GGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMY  197 (343)
Q Consensus       120 ~~~d~~~~~~~~~~-~~~-~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~  197 (343)
                      +.+|.++|+...-. ... +..........+++.  +.++++..                  .+.|+.+|+++|+..--.
T Consensus        89 ~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~------------------~g~l~~~d~~tG~~~w~~  148 (238)
T PF13360_consen   89 YALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDG--DRLYVGTS------------------SGKLVALDPKTGKLLWKY  148 (238)
T ss_dssp             EEEETTTSCEEEEEEE-SSCTCSTB--SEEEEET--TEEEEEET------------------CSEEEEEETTTTEEEEEE
T ss_pred             EecccCCcceeeeeccccccccccccccCceEec--CEEEEEec------------------cCcEEEEecCCCcEEEEe
Confidence            99999999876542 222 111122233445553  68888664                  357999999888764222


Q ss_pred             cC-C-CC---------cceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEe
Q 019290          198 NG-L-SF---------PNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAM  264 (343)
Q Consensus       198 ~~-~-~~---------~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~  264 (343)
                      .. . ..         ..+-.+..++ .+|++.. .+.+..++..+    ++.. +......+.....-.++.+|+++
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~-~g~~~~~d~~t----g~~~-w~~~~~~~~~~~~~~~~~l~~~~  219 (238)
T PF13360_consen  149 PVGEPRGSSPISSFSDINGSPVISDG-RVYVSSG-DGRVVAVDLAT----GEKL-WSKPISGIYSLPSVDGGTLYVTS  219 (238)
T ss_dssp             ESSTT-SS--EEEETTEEEEEECCTT-EEEEECC-TSSEEEEETTT----TEEE-EEECSS-ECECEECCCTEEEEEE
T ss_pred             ecCCCCCCcceeeecccccceEEECC-EEEEEcC-CCeEEEEECCC----CCEE-EEecCCCccCCceeeCCEEEEEe
Confidence            11 1 10         1122232334 7888754 44566667665    3322 32122213333344567888888

...

>PTZ00421 coronin; Provisional

Probab=98.12  E-value=0.0074  Score=57.73  Aligned_cols=162  Identities=15%  Similarity=0.190  Sum_probs=95.4

Q ss_pred             CceEEEcC-CCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           37 PESLAFDC-NGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        37 p~~l~~d~-~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      ..++++++ +++.+.++..++.|..||..+.....-....      .      .........+..+.+++..++++++..
T Consensus        78 V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~------l------~~L~gH~~~V~~l~f~P~~~~iLaSgs  145 (493)
T PTZ00421         78 IIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDP------I------VHLQGHTKKVGIVSFHPSAMNVLASAG  145 (493)
T ss_pred             EEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcc------e------EEecCCCCcEEEEEeCcCCCCEEEEEe
Confidence            56899999 7887888889999999987653211000000      0      000112234567889884444444433


Q ss_pred             CCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceE
Q 019290          116 YFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVT  194 (343)
Q Consensus       116 ~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~  194 (343)
                      .++ |..+|.++++........    ...+.++++.+ +|.+.++...                 .+.|..||+.+++..
T Consensus       146 ~DgtVrIWDl~tg~~~~~l~~h----~~~V~sla~sp-dG~lLatgs~-----------------Dg~IrIwD~rsg~~v  203 (493)
T PTZ00421        146 ADMVVNVWDVERGKAVEVIKCH----SDQITSLEWNL-DGSLLCTTSK-----------------DKKLNIIDPRDGTIV  203 (493)
T ss_pred             CCCEEEEEECCCCeEEEEEcCC----CCceEEEEEEC-CCCEEEEecC-----------------CCEEEEEECCCCcEE
Confidence            444 889999887644322211    13578899999 5887775543                 467888898766643


Q ss_pred             E-eecCC-CCcceeEEecCCCEEEEEE---cCCCeEEEEEccC
Q 019290          195 V-MYNGL-SFPNGVALSNNNSFLLLAE---SATLKILRFWLQG  232 (343)
Q Consensus       195 ~-~~~~~-~~~~~i~~~~d~~~lyv~~---~~~~~i~~~~~~~  232 (343)
                      . +.... .......+.+++..+..+.   ..++.|..||+..
T Consensus       204 ~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~  246 (493)
T PTZ00421        204 SSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRK  246 (493)
T ss_pred             EEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCC
Confidence            2 22111 1123455666666555443   2357899999753

>PRK01742 tolB translocation protein TolB; Provisional

Probab=98.11  E-value=0.0039  Score=58.82  Aligned_cols=114  Identities=16%  Similarity=0.172  Sum_probs=69.9

Q ss_pred             eeeEEEeCCCCeEEEEeCCC---eEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCe-EEEEeCCcccccccceee
Q 019290           98 PLGIKFNPVTCDLYIADAYF---GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGI-VYFTDSSIYFQRRQYFMS  173 (343)
Q Consensus        98 p~gi~~~~~~~~l~v~~~~~---gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~-l~v~~~~~~~~~~~~~~~  173 (343)
                      .....+++++..|.++....   .|+.+|.++++.+.+.... +    .....++.| ||+ |.++...           
T Consensus       206 v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~-g----~~~~~~wSP-DG~~La~~~~~-----------  268 (429)
T PRK01742        206 LMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFR-G----HNGAPAFSP-DGSRLAFASSK-----------  268 (429)
T ss_pred             cccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCC-C----ccCceeECC-CCCEEEEEEec-----------
Confidence            34567888555565553322   4999999888765553221 1    123578888 575 5554321           


Q ss_pred             eeecCCCceEEEEeCCCCceEEeecCCCCcceeEEecCCCEEEEEEcCCC--eEEEEEccC
Q 019290          174 IATGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESATL--KILRFWLQG  232 (343)
Q Consensus       174 ~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~--~i~~~~~~~  232 (343)
                          .+.-.||.+|.++++.+.+..........++++||+.++++....+  .||.++..+
T Consensus       269 ----~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~  325 (429)
T PRK01742        269 ----DGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASG  325 (429)
T ss_pred             ----CCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCC
Confidence                1123589999887777766544444567889999998887754433  566666544

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=98.10  E-value=0.00053  Score=64.13  Aligned_cols=107  Identities=20%  Similarity=0.343  Sum_probs=68.7

Q ss_pred             cCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEee------c--CCCCcceeEEecCC-
Q 019290          142 RFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMY------N--GLSFPNGVALSNNN-  212 (343)
Q Consensus       142 ~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~------~--~~~~~~~i~~~~d~-  212 (343)
                      ..|.+|++.+ ||++||++..                 .++|+++++.++..+.+.      .  .....-+++++|+- 
T Consensus        30 ~~Pw~maflP-DG~llVtER~-----------------~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~   91 (454)
T TIGR03606        30 NKPWALLWGP-DNQLWVTERA-----------------TGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFM   91 (454)
T ss_pred             CCceEEEEcC-CCeEEEEEec-----------------CCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCcc
Confidence            5688999999 6999998753                 468888887654432211      1  23456789998763 


Q ss_pred             -----CEEEEEEcC---------CCeEEEEEccCc-cccccce-eeecCCC----CCCceeeCCCCCEEEEecc
Q 019290          213 -----SFLLLAESA---------TLKILRFWLQGE-RTTYTPQ-LFAEMPR----FPDNIKSDSKGEFWIAMNS  266 (343)
Q Consensus       213 -----~~lyv~~~~---------~~~i~~~~~~~~-~~~~~~~-~~~~~~~----~p~~i~~d~~G~lwi~~~~  266 (343)
                           +.+|++.+.         ..+|.|+.++.. ..+...+ ++...+.    .-..|++++||.|||+...
T Consensus        92 ~~~~n~~lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD  165 (454)
T TIGR03606        92 QEKGNPYVYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGE  165 (454)
T ss_pred             ccCCCcEEEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECC
Confidence                 468887422         468999987632 1112223 3322221    1234889999999999876

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.09  E-value=0.0031  Score=58.76  Aligned_cols=176  Identities=11%  Similarity=0.051  Sum_probs=89.2

Q ss_pred             CCeEEEEeCCCeEEEEeCCCCeEEEcccccCCC-CccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEE
Q 019290          107 TCDLYIADAYFGLMVVGPNGGQAQQLASSAGGI-PFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLK  185 (343)
Q Consensus       107 ~~~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~-~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~  185 (343)
                      ++.+|+++....++.+|.++|+...-....... .......-++..  +.++++..                  .+.++.
T Consensus       160 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~--~~v~~~~~------------------~g~v~a  219 (394)
T PRK11138        160 DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAF--GGAIVGGD------------------NGRVSA  219 (394)
T ss_pred             CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEEC--CEEEEEcC------------------CCEEEE
Confidence            578898854445999999999876543221100 000111223333  57777543                  456777


Q ss_pred             EeCCCCceEEeecCCCCc-------------ceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeec-CCCCCCc
Q 019290          186 YDPLKKNVTVMYNGLSFP-------------NGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAE-MPRFPDN  251 (343)
Q Consensus       186 ~d~~~~~~~~~~~~~~~~-------------~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~p~~  251 (343)
                      +|.++|+..--.. ...+             ..-.+  .++.+|+... .+.++.++...    ++. .+.. ... +..
T Consensus       220 ~d~~~G~~~W~~~-~~~~~~~~~~~~~~~~~~sP~v--~~~~vy~~~~-~g~l~ald~~t----G~~-~W~~~~~~-~~~  289 (394)
T PRK11138        220 VLMEQGQLIWQQR-ISQPTGATEIDRLVDVDTTPVV--VGGVVYALAY-NGNLVALDLRS----GQI-VWKREYGS-VND  289 (394)
T ss_pred             EEccCChhhheec-cccCCCccchhcccccCCCcEE--ECCEEEEEEc-CCeEEEEECCC----CCE-EEeecCCC-ccC
Confidence            8877765421110 0000             11112  2456888764 67899999764    221 2221 111 223


Q ss_pred             eeeCCCCCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECC-CCCEEEEeeCCCCCccCCceeEEEeCCEEEE
Q 019290          252 IKSDSKGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDV-NGNVVDVLDGNEGNTLNSVSEVQEYGEYLYT  330 (343)
Q Consensus       252 i~~d~~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i  330 (343)
                      ++. .+|++|+++..                         +.++++|+ +|+.+=......+   ...+.....+|+||+
T Consensus       290 ~~~-~~~~vy~~~~~-------------------------g~l~ald~~tG~~~W~~~~~~~---~~~~sp~v~~g~l~v  340 (394)
T PRK11138        290 FAV-DGGRIYLVDQN-------------------------DRVYALDTRGGVELWSQSDLLH---RLLTAPVLYNGYLVV  340 (394)
T ss_pred             cEE-ECCEEEEEcCC-------------------------CeEEEEECCCCcEEEcccccCC---CcccCCEEECCEEEE
Confidence            333 35789988754                         47888987 4655322221111   112223334677777


Q ss_pred             ecCCCCeEEEEc
Q 019290          331 GSSVQPYVVVIK  342 (343)
Q Consensus       331 ~~~~~~~i~~~~  342 (343)
                      ++... .+..++
T Consensus       341 ~~~~G-~l~~ld  351 (394)
T PRK11138        341 GDSEG-YLHWIN  351 (394)
T ss_pred             EeCCC-EEEEEE
Confidence            65543 344443

>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]

Probab=98.09  E-value=0.00019  Score=64.17  Aligned_cols=101  Identities=17%  Similarity=0.294  Sum_probs=70.7

Q ss_pred             cCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEeec-----CCCCcceeEEecCCCEEE
Q 019290          142 RFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYN-----GLSFPNGVALSNNNSFLL  216 (343)
Q Consensus       142 ~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~-----~~~~~~~i~~~~d~~~ly  216 (343)
                      ..|-+|+++.+.|++||+|..                  -+|+.++++++..+.+..     .+...|++.+++ ++.+|
T Consensus       115 GRPLGl~f~~~ggdL~VaDAY------------------lGL~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~-~g~vy  175 (376)
T KOG1520|consen  115 GRPLGIRFDKKGGDLYVADAY------------------LGLLKVGPEGGLAELLADEAEGKPFKFLNDLDIDP-EGVVY  175 (376)
T ss_pred             CCcceEEeccCCCeEEEEecc------------------eeeEEECCCCCcceeccccccCeeeeecCceeEcC-CCeEE
Confidence            568899999864599998864                  469999998776544332     235578999998 45689


Q ss_pred             EEEcC-----------------CCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEec
Q 019290          217 LAESA-----------------TLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMN  265 (343)
Q Consensus       217 v~~~~-----------------~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~  265 (343)
                      ++++.                 .|++.+||..+    ...+++.+.-.+|+|+++++|+.+.+.+.
T Consensus       176 FTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~t----K~~~VLld~L~F~NGlaLS~d~sfvl~~E  237 (376)
T KOG1520|consen  176 FTDSSSKYDRRDFVFAALEGDPTGRLFRYDPST----KVTKVLLDGLYFPNGLALSPDGSFVLVAE  237 (376)
T ss_pred             EeccccccchhheEEeeecCCCccceEEecCcc----cchhhhhhcccccccccCCCCCCEEEEEe
Confidence            98764                 56777777544    33344444334699999999986655443

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=98.08  E-value=0.0051  Score=52.56  Aligned_cols=184  Identities=12%  Similarity=0.161  Sum_probs=113.8

Q ss_pred             CceEEEcCCCCeeEEEecCCEEEEEEcCCCCeE-EeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           37 PESLAFDCNGEGPYVGVSDGRILKWKAANSGWT-EFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        37 p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      ..+++..+||+..+.+..++.+..+|..+++.+ .|.                    .......++++++++..+.-+..
T Consensus        66 v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~--------------------GH~~dVlsva~s~dn~qivSGSr  125 (315)
T KOG0279|consen   66 VSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFV--------------------GHTKDVLSVAFSTDNRQIVSGSR  125 (315)
T ss_pred             ecceEEccCCceEEeccccceEEEEEecCCcEEEEEE--------------------ecCCceEEEEecCCCceeecCCC
Confidence            668889999997778899999999999886433 332                    11223578899983334444433


Q ss_pred             CCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEE
Q 019290          116 YFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTV  195 (343)
Q Consensus       116 ~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~  195 (343)
                      ..-|..+|..++..-.+....+   -..++.+.+.|+..+.++...+                ....|-.+|.++-+.+.
T Consensus       126 DkTiklwnt~g~ck~t~~~~~~---~~WVscvrfsP~~~~p~Ivs~s----------------~DktvKvWnl~~~~l~~  186 (315)
T KOG0279|consen  126 DKTIKLWNTLGVCKYTIHEDSH---REWVSCVRFSPNESNPIIVSAS----------------WDKTVKVWNLRNCQLRT  186 (315)
T ss_pred             cceeeeeeecccEEEEEecCCC---cCcEEEEEEcCCCCCcEEEEcc----------------CCceEEEEccCCcchhh
Confidence            3448888877554333322211   3678899999953344443222                13446667776544432


Q ss_pred             -eecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeee-cCCCCCCceeeCCCCCEEEEecc
Q 019290          196 -MYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFA-EMPRFPDNIKSDSKGEFWIAMNS  266 (343)
Q Consensus       196 -~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~p~~i~~d~~G~lwi~~~~  266 (343)
                       +...-...+.++++|||. +..+.-.++.++.||++.    ++. .+. +.......+++.| .++|++...
T Consensus       187 ~~~gh~~~v~t~~vSpDGs-lcasGgkdg~~~LwdL~~----~k~-lysl~a~~~v~sl~fsp-nrywL~~at  252 (315)
T KOG0279|consen  187 TFIGHSGYVNTVTVSPDGS-LCASGGKDGEAMLWDLNE----GKN-LYSLEAFDIVNSLCFSP-NRYWLCAAT  252 (315)
T ss_pred             ccccccccEEEEEECCCCC-EEecCCCCceEEEEEccC----Cce-eEeccCCCeEeeEEecC-CceeEeecc
Confidence             223334468899999997 555666688999999875    221 221 1222345678887 458888665

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=98.08  E-value=0.0037  Score=56.90  Aligned_cols=213  Identities=13%  Similarity=0.108  Sum_probs=117.6

Q ss_pred             cCCCCCCCceEEEcCCCCeeEEEecCCE--EEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCC
Q 019290           30 QLPGVVGPESLAFDCNGEGPYVGVSDGR--ILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVT  107 (343)
Q Consensus        30 ~~~~~~~p~~l~~d~~g~~l~~~~~~g~--i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~  107 (343)
                      ..|-...-.++-+-|.-.++.++..++.  ||.+|..+....   .+..                -.........+.+ +
T Consensus       209 ~~ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~l---qS~~----------------l~~fPi~~a~f~p-~  268 (514)
T KOG2055|consen  209 AHPSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKL---QSIH----------------LEKFPIQKAEFAP-N  268 (514)
T ss_pred             CCcCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhh---eeee----------------eccCccceeeecC-C
Confidence            3443335678889998887777766764  455554432211   0000                0011123455666 5


Q ss_pred             Ce-EEEEeCCCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEE
Q 019290          108 CD-LYIADAYFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLK  185 (343)
Q Consensus       108 ~~-l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~  185 (343)
                      |. ..++..... +|.||.++.++..+... .+.+...+..+.+.+ ++.+.+....                 .|-|+.
T Consensus       269 G~~~i~~s~rrky~ysyDle~ak~~k~~~~-~g~e~~~~e~FeVSh-d~~fia~~G~-----------------~G~I~l  329 (514)
T KOG2055|consen  269 GHSVIFTSGRRKYLYSYDLETAKVTKLKPP-YGVEEKSMERFEVSH-DSNFIAIAGN-----------------NGHIHL  329 (514)
T ss_pred             CceEEEecccceEEEEeeccccccccccCC-CCcccchhheeEecC-CCCeEEEccc-----------------CceEEe
Confidence            54 444423334 88999999998877433 222334567778888 4664442222                 466887


Q ss_pred             EeCCCCceEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCC-CCCceeeCCCCCEEEEe
Q 019290          186 YDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPR-FPDNIKSDSKGEFWIAM  264 (343)
Q Consensus       186 ~d~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~p~~i~~d~~G~lwi~~  264 (343)
                      +...+++...-..--....+++|+.|++.||++. ..+.||+|++....   ....+....+ .-..+|...+|. |+++
T Consensus       330 LhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~-~~GeV~v~nl~~~~---~~~rf~D~G~v~gts~~~S~ng~-ylA~  404 (514)
T KOG2055|consen  330 LHAKTKELITSFKIEGVVSDFTFSSDSKELLASG-GTGEVYVWNLRQNS---CLHRFVDDGSVHGTSLCISLNGS-YLAT  404 (514)
T ss_pred             ehhhhhhhhheeeeccEEeeEEEecCCcEEEEEc-CCceEEEEecCCcc---eEEEEeecCccceeeeeecCCCc-eEEe
Confidence            7776666432111112357888999999888875 46799999987532   1223332111 223467777887 5554


Q ss_pred             cc-CCCccccccccccccccCCC
Q 019290          265 NS-ARGKIESNKKTAFCEETAKP  286 (343)
Q Consensus       265 ~~-~~~~~~~~~~~~~~~~~~~~  286 (343)
                      .. .+...+-..+..+....|.|
T Consensus       405 GS~~GiVNIYd~~s~~~s~~PkP  427 (514)
T KOG2055|consen  405 GSDSGIVNIYDGNSCFASTNPKP  427 (514)
T ss_pred             ccCcceEEEeccchhhccCCCCc
Confidence            43 22222222244455555555

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.06  E-value=0.0006  Score=58.82  Aligned_cols=176  Identities=16%  Similarity=0.223  Sum_probs=100.4

Q ss_pred             ccccccccCCCCCCCceEEEcCCCCeeEEEecCCEEEEEE--cCCCCeE--EeeecCCCccccccCCCCCcccCCCcCCe
Q 019290           23 SKSYQQLQLPGVVGPESLAFDCNGEGPYVGVSDGRILKWK--AANSGWT--EFATTAPHRAREICDGSTNTTLEPLCGRP   98 (343)
Q Consensus        23 ~~~~~~~~~~~~~~p~~l~~d~~g~~l~~~~~~g~i~~~d--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p   98 (343)
                      -..+++++++++..||.|.+-.+|.+..+...+.+++.+.  +++....  .+.........++             ..=
T Consensus       117 GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N-------------~Gf  183 (316)
T COG3204         117 GDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKN-------------KGF  183 (316)
T ss_pred             CceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCC-------------cCc
Confidence            4567899999999999999999998555667777877764  4432111  1111111110011             123


Q ss_pred             eeEEEeCCCCeEEEEeCC--CeEEEEeCCCCeEEE-cccccCCC---CccCcceeEEeCCCCeEEE-EeCCcccccccce
Q 019290           99 LGIKFNPVTCDLYIADAY--FGLMVVGPNGGQAQQ-LASSAGGI---PFRFTNDLDIDPNTGIVYF-TDSSIYFQRRQYF  171 (343)
Q Consensus        99 ~gi~~~~~~~~l~v~~~~--~gi~~~d~~~~~~~~-~~~~~~~~---~~~~~~~i~~d~~dg~l~v-~~~~~~~~~~~~~  171 (343)
                      .|++.+++++++|++...  -+|+.++........ ........   -..-+.++.+++..|.++| ++.          
T Consensus       184 EGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~E----------  253 (316)
T COG3204         184 EGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDE----------  253 (316)
T ss_pred             eeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecC----------
Confidence            589999988999999643  357777632211111 11111100   1233566777754455554 332          


Q ss_pred             eeeeecCCCceEEEEeCCCCceEEe---------ecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEcc
Q 019290          172 MSIATGDRSGRLLKYDPLKKNVTVM---------YNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQ  231 (343)
Q Consensus       172 ~~~~~~~~~~~v~~~d~~~~~~~~~---------~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~  231 (343)
                              +..|..+|..+.....+         ..+...+.|++++.+|. ||+++ ..+..|+|..+
T Consensus       254 --------Sr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~-lYIvS-EPnlfy~F~~~  312 (316)
T COG3204         254 --------SRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGN-LYIVS-EPNLFYRFTPQ  312 (316)
T ss_pred             --------CceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCC-EEEEe-cCCcceecccC
Confidence                    34566677653322221         12344589999997775 78774 46788888754

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.06  E-value=0.0046  Score=58.83  Aligned_cols=189  Identities=15%  Similarity=0.204  Sum_probs=113.0

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      +..++.+.++|+.+..+..++.+..++..+... ...                .........+.++++.+ ++.+.++..
T Consensus       161 sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~~~----------------~~l~~h~~~v~~~~fs~-d~~~l~s~s  222 (456)
T KOG0266|consen  161 SVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-NLL----------------RELSGHTRGVSDVAFSP-DGSYLLSGS  222 (456)
T ss_pred             ceEEEEEcCCCCeEEEccCCCcEEEeecccccc-hhh----------------ccccccccceeeeEECC-CCcEEEEec
Confidence            455677889999766666677666666533221 000                00012223467899998 665555434


Q ss_pred             CC-eEEEEeCC-CCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCce
Q 019290          116 YF-GLMVVGPN-GGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNV  193 (343)
Q Consensus       116 ~~-gi~~~d~~-~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~  193 (343)
                      .+ .+..+|.+ .+.........    ...++++++.+ +|++.++...                 .+.|..+|..+++.
T Consensus       223 ~D~tiriwd~~~~~~~~~~l~gH----~~~v~~~~f~p-~g~~i~Sgs~-----------------D~tvriWd~~~~~~  280 (456)
T KOG0266|consen  223 DDKTLRIWDLKDDGRNLKTLKGH----STYVTSVAFSP-DGNLLVSGSD-----------------DGTVRIWDVRTGEC  280 (456)
T ss_pred             CCceEEEeeccCCCeEEEEecCC----CCceEEEEecC-CCCEEEEecC-----------------CCcEEEEeccCCeE
Confidence            43 48888883 33332222221    24578999999 4888886654                 45688888887766


Q ss_pred             EEe-ecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCC-C-CceeeCCCCCEEEEecc
Q 019290          194 TVM-YNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRF-P-DNIKSDSKGEFWIAMNS  266 (343)
Q Consensus       194 ~~~-~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-p-~~i~~d~~G~lwi~~~~  266 (343)
                      ... ........++++.+++..+..+ +.++.|..||+.+... .-.+.+...... | ..+.++++|...++...
T Consensus       281 ~~~l~~hs~~is~~~f~~d~~~l~s~-s~d~~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~  354 (456)
T KOG0266|consen  281 VRKLKGHSDGISGLAFSPDGNLLVSA-SYDGTIRVWDLETGSK-LCLKLLSGAENSAPVTSVQFSPNGKYLLSASL  354 (456)
T ss_pred             EEeeeccCCceEEEEECCCCCEEEEc-CCCccEEEEECCCCce-eeeecccCCCCCCceeEEEECCCCcEEEEecC
Confidence            543 3444567889999999866555 6689999999876331 101122222221 2 44567888866555544

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=98.04  E-value=0.0067  Score=58.53  Aligned_cols=190  Identities=18%  Similarity=0.163  Sum_probs=116.2

Q ss_pred             eeeEEEeCCCCeEEEEeCCCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeee
Q 019290           98 PLGIKFNPVTCDLYIADAYFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIAT  176 (343)
Q Consensus        98 p~gi~~~~~~~~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~  176 (343)
                      ...+++...++.|-++...-| +.+++.++....    ..+......++.++..| ||.+.++...              
T Consensus       310 I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYV----lKQQgH~~~i~~l~YSp-Dgq~iaTG~e--------------  370 (893)
T KOG0291|consen  310 ILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYV----LKQQGHSDRITSLAYSP-DGQLIATGAE--------------  370 (893)
T ss_pred             eeEEEecccCCEEEEcCCccceEEEEEeecccee----eeccccccceeeEEECC-CCcEEEeccC--------------
Confidence            345556653455666644334 666665543321    11122245688999999 6988876543              


Q ss_pred             cCCCceEEEEeCCCCce-EEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeec-CCCCCCceee
Q 019290          177 GDRSGRLLKYDPLKKNV-TVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAE-MPRFPDNIKS  254 (343)
Q Consensus       177 ~~~~~~v~~~d~~~~~~-~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~p~~i~~  254 (343)
                         .++|-.||..++-. .++..+-+...++.|+..++.+ ++.+.+|+|..||+..-   .+++.|.. .+-....+++
T Consensus       371 ---DgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~l-lssSLDGtVRAwDlkRY---rNfRTft~P~p~Qfscvav  443 (893)
T KOG0291|consen  371 ---DGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVL-LSSSLDGTVRAWDLKRY---RNFRTFTSPEPIQFSCVAV  443 (893)
T ss_pred             ---CCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEE-EEeecCCeEEeeeeccc---ceeeeecCCCceeeeEEEE
Confidence               56788888776543 3445556778899999888754 55667999999998642   34555542 2222456788


Q ss_pred             CCCCCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECC-CCCEEEEeeCCCCCccCCceeEEEe-CCEEEEec
Q 019290          255 DSKGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDV-NGNVVDVLDGNEGNTLNSVSEVQEY-GEYLYTGS  332 (343)
Q Consensus       255 d~~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~  332 (343)
                      |+.|.+.++...  +.+                     .|+..+. .|+++..+...++    +++....+ .+.+..+.
T Consensus       444 D~sGelV~AG~~--d~F---------------------~IfvWS~qTGqllDiLsGHEg----PVs~l~f~~~~~~LaS~  496 (893)
T KOG0291|consen  444 DPSGELVCAGAQ--DSF---------------------EIFVWSVQTGQLLDILSGHEG----PVSGLSFSPDGSLLASG  496 (893)
T ss_pred             cCCCCEEEeecc--ceE---------------------EEEEEEeecCeeeehhcCCCC----cceeeEEccccCeEEec
Confidence            999988877543  222                     5666775 6888888876666    34433322 44555555


Q ss_pred             CCCCeEEE
Q 019290          333 SVQPYVVV  340 (343)
Q Consensus       333 ~~~~~i~~  340 (343)
                      ...+.|.+
T Consensus       497 SWDkTVRi  504 (893)
T KOG0291|consen  497 SWDKTVRI  504 (893)
T ss_pred             cccceEEE
Confidence            54445443

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=98.01  E-value=0.013  Score=54.41  Aligned_cols=198  Identities=11%  Similarity=0.101  Sum_probs=107.1

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      ...++-+.|||.++-+...+|.++.||..+++..-....                -+...+....++..|+..++.-+..
T Consensus       192 FV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~----------------~~aHkGsIfalsWsPDs~~~~T~Sa  255 (603)
T KOG0318|consen  192 FVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELED----------------SDAHKGSIFALSWSPDSTQFLTVSA  255 (603)
T ss_pred             ceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecC----------------CCCccccEEEEEECCCCceEEEecC
Confidence            377999999999555667899999999988765433211                0133445677888874455555433


Q ss_pred             CCeEEEEeCCCCeEEEcccccCCC---------------------------------------CccCcceeEEeCCCCeE
Q 019290          116 YFGLMVVGPNGGQAQQLASSAGGI---------------------------------------PFRFTNDLDIDPNTGIV  156 (343)
Q Consensus       116 ~~gi~~~d~~~~~~~~~~~~~~~~---------------------------------------~~~~~~~i~~d~~dg~l  156 (343)
                      ...+..+|..+.++..-.......                                       ....+..+.+.+ |+..
T Consensus       256 Dkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~-d~~~  334 (603)
T KOG0318|consen  256 DKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSP-DGKT  334 (603)
T ss_pred             CceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcC-CCCE
Confidence            333555555544432211111000                                       011223333333 2332


Q ss_pred             EEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEeec--CCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCcc
Q 019290          157 YFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYN--GLSFPNGVALSNNNSFLLLAESATLKILRFWLQGER  234 (343)
Q Consensus       157 ~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~--~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~  234 (343)
                      .++.                 .-.|.|..++..++.--++..  ......+++.+..+. ++-.. .+..|.+.++.++.
T Consensus       335 i~Sg-----------------syDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~-~~t~g-~Dd~l~~~~~~~~~  395 (603)
T KOG0318|consen  335 IYSG-----------------SYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGE-LFTIG-WDDTLRVISLKDNG  395 (603)
T ss_pred             EEee-----------------ccCceEEEEecCCccccccccccccceEEEEeecCCCc-EEEEe-cCCeEEEEecccCc
Confidence            2222                 225667777766554444321  223356777665454 44444 57789999886543


Q ss_pred             ccccceeeecCCCCCCceeeCCCCCEEEEeccCCCcc
Q 019290          235 TTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNSARGKI  271 (343)
Q Consensus       235 ~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~~~~~~~  271 (343)
                      - ..... .++...|-++++.++|.+-+....+.-.+
T Consensus       396 ~-t~~~~-~~lg~QP~~lav~~d~~~avv~~~~~iv~  430 (603)
T KOG0318|consen  396 Y-TKSEV-VKLGSQPKGLAVLSDGGTAVVACISDIVL  430 (603)
T ss_pred             c-cccce-eecCCCceeEEEcCCCCEEEEEecCcEEE
Confidence            3 22222 23455688999988875544443324433

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=98.00  E-value=0.0011  Score=63.63  Aligned_cols=253  Identities=15%  Similarity=0.180  Sum_probs=142.4

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccc---------cccCC---CCCcccCCCcCCeeeEEE
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAR---------EICDG---STNTTLEPLCGRPLGIKF  103 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~---------~~~~~---~~~~~~~~~~~~p~gi~~  103 (343)
                      ...|..+..|+.++-.+..+..|+.|.....+++.+.........         ...+-   ...+......+.+.|..+
T Consensus       380 ~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sF  459 (707)
T KOG0263|consen  380 GVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSF  459 (707)
T ss_pred             cceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeee
Confidence            456667777877555666677677765543222222211111110         11110   011122334455679999


Q ss_pred             eCCCCeEEEEeCCCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCce
Q 019290          104 NPVTCDLYIADAYFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGR  182 (343)
Q Consensus       104 ~~~~~~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~  182 (343)
                      .| ++++++...+++ +..+..++-.-.......    ..-+-++.+.|. |..|++.++.               ...+
T Consensus       460 sP-d~rfLlScSED~svRLWsl~t~s~~V~y~GH----~~PVwdV~F~P~-GyYFatas~D---------------~tAr  518 (707)
T KOG0263|consen  460 SP-DRRFLLSCSEDSSVRLWSLDTWSCLVIYKGH----LAPVWDVQFAPR-GYYFATASHD---------------QTAR  518 (707)
T ss_pred             cc-cccceeeccCCcceeeeecccceeEEEecCC----CcceeeEEecCC-ceEEEecCCC---------------ceee
Confidence            99 777777656644 555555543222221211    122456778885 6666655442               2457


Q ss_pred             EEEEeCCCCceEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEE
Q 019290          183 LLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWI  262 (343)
Q Consensus       183 v~~~d~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi  262 (343)
                      +|..|.. .-.+.++..+.....+.|+|+.. ...+++....+..||....   ...++|..-.+....+++.+.|+...
T Consensus       519 LWs~d~~-~PlRifaghlsDV~cv~FHPNs~-Y~aTGSsD~tVRlWDv~~G---~~VRiF~GH~~~V~al~~Sp~Gr~La  593 (707)
T KOG0263|consen  519 LWSTDHN-KPLRIFAGHLSDVDCVSFHPNSN-YVATGSSDRTVRLWDVSTG---NSVRIFTGHKGPVTALAFSPCGRYLA  593 (707)
T ss_pred             eeecccC-CchhhhcccccccceEEECCccc-ccccCCCCceEEEEEcCCC---cEEEEecCCCCceEEEEEcCCCceEe
Confidence            8877753 34455667788888999999876 3456777889999997642   23456543333345678899995555


Q ss_pred             EeccCCCccccccccccccccCCCcccCCCeEEEECC-CCCEEEEeeCCCCCccCCceeEEEe-CCEEEEecCCCCeEEE
Q 019290          263 AMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDV-NGNVVDVLDGNEGNTLNSVSEVQEY-GEYLYTGSSVQPYVVV  340 (343)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~~~~i~~  340 (343)
                      +...                        .+.|..+|- .|+.+..+-...    ..+..+... +|.+.+.+...++|.+
T Consensus       594 Sg~e------------------------d~~I~iWDl~~~~~v~~l~~Ht----~ti~SlsFS~dg~vLasgg~DnsV~l  645 (707)
T KOG0263|consen  594 SGDE------------------------DGLIKIWDLANGSLVKQLKGHT----GTIYSLSFSRDGNVLASGGADNSVRL  645 (707)
T ss_pred             eccc------------------------CCcEEEEEcCCCcchhhhhccc----CceeEEEEecCCCEEEecCCCCeEEE
Confidence            4433                        234445563 566655543222    234444443 7888888877788877


Q ss_pred             Ec
Q 019290          341 IK  342 (343)
Q Consensus       341 ~~  342 (343)
                      .|
T Consensus       646 WD  647 (707)
T KOG0263|consen  646 WD  647 (707)
T ss_pred             EE
Confidence            65

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=98.00  E-value=0.00019  Score=65.20  Aligned_cols=188  Identities=12%  Similarity=0.078  Sum_probs=119.0

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      ...++++..+|..+.++..+.-|-.||.+|+....=.                    ...-.|..+.+.+++.+++++..
T Consensus       260 ~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f--------------------~~~~~~~cvkf~pd~~n~fl~G~  319 (503)
T KOG0282|consen  260 PVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRF--------------------HLDKVPTCVKFHPDNQNIFLVGG  319 (503)
T ss_pred             hhhhhhccccCCeeeeeecceeeeeeccccceEEEEE--------------------ecCCCceeeecCCCCCcEEEEec
Confidence            3678999999998888889999999999987654211                    12224567888885546766645


Q ss_pred             CCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceE
Q 019290          116 YFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVT  194 (343)
Q Consensus       116 ~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~  194 (343)
                      .++ |..+|.+++++..-..    ..+..++++.+-+ +|+-+++.+.                 ...+..|+.......
T Consensus       320 sd~ki~~wDiRs~kvvqeYd----~hLg~i~~i~F~~-~g~rFissSD-----------------dks~riWe~~~~v~i  377 (503)
T KOG0282|consen  320 SDKKIRQWDIRSGKVVQEYD----RHLGAILDITFVD-EGRRFISSSD-----------------DKSVRIWENRIPVPI  377 (503)
T ss_pred             CCCcEEEEeccchHHHHHHH----hhhhheeeeEEcc-CCceEeeecc-----------------CccEEEEEcCCCccc
Confidence            554 9999999887432211    1235688898888 4888887764                 223333433333332


Q ss_pred             Eeec--CCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeec--CCCCCCceeeCCCCCEEEEecc
Q 019290          195 VMYN--GLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAE--MPRFPDNIKSDSKGEFWIAMNS  266 (343)
Q Consensus       195 ~~~~--~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~p~~i~~d~~G~lwi~~~~  266 (343)
                      .+..  ..-..-.+..+|.+. .+++.+..+.|+.|.....-.+...+.|..  ..|.+-.+.+++||...+....
T Consensus       378 k~i~~~~~hsmP~~~~~P~~~-~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGds  452 (503)
T KOG0282|consen  378 KNIADPEMHTMPCLTLHPNGK-WFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDS  452 (503)
T ss_pred             hhhcchhhccCcceecCCCCC-eehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecC
Confidence            2221  112234566778776 456677789999998654433233344432  4566666778888887777665

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.99  E-value=0.0004  Score=57.88  Aligned_cols=143  Identities=15%  Similarity=0.204  Sum_probs=87.3

Q ss_pred             CceEEEcCCCCeeEEEecC----------CEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCC
Q 019290           37 PESLAFDCNGEGPYVGVSD----------GRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPV  106 (343)
Q Consensus        37 p~~l~~d~~g~~l~~~~~~----------g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~  106 (343)
                      ..+--.||+|+ +|.+++.          |.++++-+ .++...+.                    ...+-++|++.+.+
T Consensus       111 ~NDgkvdP~Gr-yy~GtMad~~~~le~~~g~Ly~~~~-~h~v~~i~--------------------~~v~IsNgl~Wd~d  168 (310)
T KOG4499|consen  111 LNDGKVDPDGR-YYGGTMADFGDDLEPIGGELYSWLA-GHQVELIW--------------------NCVGISNGLAWDSD  168 (310)
T ss_pred             cccCccCCCCc-eeeeeeccccccccccccEEEEecc-CCCceeee--------------------hhccCCcccccccc
Confidence            55677899999 6876542          34444433 33333332                    22344789999886


Q ss_pred             CCeEEEEeCCC-eE--EEEeCCCCeEEE---ccccc--CCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecC
Q 019290          107 TCDLYIADAYF-GL--MVVGPNGGQAQQ---LASSA--GGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGD  178 (343)
Q Consensus       107 ~~~l~v~~~~~-gi--~~~d~~~~~~~~---~~~~~--~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~  178 (343)
                      ...+|+.|+-+ .|  +.||..+|.+..   +....  .......|.++++|. +|.||++...                
T Consensus       169 ~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~-eG~L~Va~~n----------------  231 (310)
T KOG4499|consen  169 AKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDT-EGNLYVATFN----------------  231 (310)
T ss_pred             CcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEcc-CCcEEEEEec----------------
Confidence            77899998654 36  677788876432   22211  111235688999999 5999999876                


Q ss_pred             CCceEEEEeCCCCceEE-eecCCCCcceeEEe-cCCCEEEEEE
Q 019290          179 RSGRLLKYDPLKKNVTV-MYNGLSFPNGVALS-NNNSFLLLAE  219 (343)
Q Consensus       179 ~~~~v~~~d~~~~~~~~-~~~~~~~~~~i~~~-~d~~~lyv~~  219 (343)
                       .++|+++|+.+|+.-. +.-.-.....-||. ++-..+|++.
T Consensus       232 -g~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d~~yvT~  273 (310)
T KOG4499|consen  232 -GGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNLDILYVTT  273 (310)
T ss_pred             -CcEEEEECCCCCcEEEEEEcCCCceEEEEecCCCccEEEEEe
Confidence             6789999999888632 21111223444553 2224566654

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=97.98  E-value=0.0086  Score=51.56  Aligned_cols=239  Identities=9%  Similarity=0.067  Sum_probs=140.8

Q ss_pred             CCCCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeE-EE
Q 019290           34 VVGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDL-YI  112 (343)
Q Consensus        34 ~~~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l-~v  112 (343)
                      +.+..++-+.+|.+++..+..+|.+..||.-|....+..+                   ....-+...++.| .+++ -.
T Consensus        55 ~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haip-------------------l~s~WVMtCA~sP-Sg~~VAc  114 (343)
T KOG0286|consen   55 LNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIP-------------------LPSSWVMTCAYSP-SGNFVAC  114 (343)
T ss_pred             ccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEe-------------------cCceeEEEEEECC-CCCeEEe
Confidence            3467889999999999999999999999987654333211                   1222345678888 4443 33


Q ss_pred             EeCCCe--EEEEeCC--CCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeC
Q 019290          113 ADAYFG--LMVVGPN--GGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDP  188 (343)
Q Consensus       113 ~~~~~g--i~~~d~~--~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~  188 (343)
                      +.-.+-  ||.+..+  .+.+ +......+. ..++....+-+ |+.|. +.++                 ......+|.
T Consensus       115 GGLdN~Csiy~ls~~d~~g~~-~v~r~l~gH-tgylScC~f~d-D~~il-T~SG-----------------D~TCalWDi  173 (343)
T KOG0286|consen  115 GGLDNKCSIYPLSTRDAEGNV-RVSRELAGH-TGYLSCCRFLD-DNHIL-TGSG-----------------DMTCALWDI  173 (343)
T ss_pred             cCcCceeEEEecccccccccc-eeeeeecCc-cceeEEEEEcC-CCceE-ecCC-----------------CceEEEEEc
Confidence            321232  4444422  1111 121111111 12344444444 34443 3322                 345666788


Q ss_pred             CCCceEE-eecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEeccC
Q 019290          189 LKKNVTV-MYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNSA  267 (343)
Q Consensus       189 ~~~~~~~-~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~~~  267 (343)
                      ++++... +........++.+.|.....|++..-+..-..||+...   .-.+.|.....-.+.+.+-|+|.-+.+... 
T Consensus       174 e~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~---~c~qtF~ghesDINsv~ffP~G~afatGSD-  249 (343)
T KOG0286|consen  174 ETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG---QCVQTFEGHESDINSVRFFPSGDAFATGSD-  249 (343)
T ss_pred             ccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCc---ceeEeecccccccceEEEccCCCeeeecCC-
Confidence            7776554 33344556778888833347888777788888887642   223444433333566788888887777666 


Q ss_pred             CCccccccccccccccCCCcccCCCeEEEECC-CCCEEEEeeCCCCCccCCceeEEEe-CCEEEEecCCCCeEEEEc
Q 019290          268 RGKIESNKKTAFCEETAKPWFLRDPVGVKFDV-NGNVVDVLDGNEGNTLNSVSEVQEY-GEYLYTGSSVQPYVVVIK  342 (343)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~~~~i~~~~  342 (343)
                                             .+....||- .+.++..|..+.  ....++.+... .|+|.+++.....+.+.|
T Consensus       250 -----------------------D~tcRlyDlRaD~~~a~ys~~~--~~~gitSv~FS~SGRlLfagy~d~~c~vWD  301 (343)
T KOG0286|consen  250 -----------------------DATCRLYDLRADQELAVYSHDS--IICGITSVAFSKSGRLLFAGYDDFTCNVWD  301 (343)
T ss_pred             -----------------------CceeEEEeecCCcEEeeeccCc--ccCCceeEEEcccccEEEeeecCCceeEee
Confidence                                   345667775 466777776432  35566666555 889888877776666554

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=97.98  E-value=0.0087  Score=51.53  Aligned_cols=228  Identities=15%  Similarity=0.117  Sum_probs=132.9

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCC---eEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEE
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSG---WTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYI  112 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v  112 (343)
                      ..-.-++.|.|+.+-++.-++.--.|+..+..   ...+.                ......-+..-...+.+ ++.|.-
T Consensus        99 WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~----------------r~l~gHtgylScC~f~d-D~~ilT  161 (343)
T KOG0286|consen   99 WVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVS----------------RELAGHTGYLSCCRFLD-DNHILT  161 (343)
T ss_pred             eEEEEEECCCCCeEEecCcCceeEEEecccccccccceee----------------eeecCccceeEEEEEcC-CCceEe
Confidence            34566788999944455555544455544321   00110                00011122233444555 778877


Q ss_pred             EeCCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCc
Q 019290          113 ADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKN  192 (343)
Q Consensus       113 ~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~  192 (343)
                      +....-...+|.++|+.........+    -+..+.+.|.+++.|++..-                 ......+|...+.
T Consensus       162 ~SGD~TCalWDie~g~~~~~f~GH~g----DV~slsl~p~~~ntFvSg~c-----------------D~~aklWD~R~~~  220 (343)
T KOG0286|consen  162 GSGDMTCALWDIETGQQTQVFHGHTG----DVMSLSLSPSDGNTFVSGGC-----------------DKSAKLWDVRSGQ  220 (343)
T ss_pred             cCCCceEEEEEcccceEEEEecCCcc----cEEEEecCCCCCCeEEeccc-----------------ccceeeeeccCcc
Confidence            74333478889999876654443332    25567777745888886543                 2234445655443


Q ss_pred             -eEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeec--CCCCCCceeeCCCCCEEEEeccCCC
Q 019290          193 -VTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAE--MPRFPDNIKSDSKGEFWIAMNSARG  269 (343)
Q Consensus       193 -~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~p~~i~~d~~G~lwi~~~~~~~  269 (343)
                       +..+...-+..|.+.|.|+|. -+++.+.++....||+..+..   ..+|..  ...-...+.++..|+|.++...   
T Consensus       221 c~qtF~ghesDINsv~ffP~G~-afatGSDD~tcRlyDlRaD~~---~a~ys~~~~~~gitSv~FS~SGRlLfagy~---  293 (343)
T KOG0286|consen  221 CVQTFEGHESDINSVRFFPSGD-AFATGSDDATCRLYDLRADQE---LAVYSHDSIICGITSVAFSKSGRLLFAGYD---  293 (343)
T ss_pred             eeEeecccccccceEEEccCCC-eeeecCCCceeEEEeecCCcE---EeeeccCcccCCceeEEEcccccEEEeeec---
Confidence             334555556789999999986 577888888888899876433   334432  1112456788999999888755   


Q ss_pred             ccccccccccccccCCCcccCCCeEEEECC-CCCEEEEeeCCCCCccCCceeEEEe-CCEEEEecC
Q 019290          270 KIESNKKTAFCEETAKPWFLRDPVGVKFDV-NGNVVDVLDGNEGNTLNSVSEVQEY-GEYLYTGSS  333 (343)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~  333 (343)
                                           ...+...|. +++.+..+...+    +.++.+... +|...-++.
T Consensus       294 ---------------------d~~c~vWDtlk~e~vg~L~GHe----NRvScl~~s~DG~av~TgS  334 (343)
T KOG0286|consen  294 ---------------------DFTCNVWDTLKGERVGVLAGHE----NRVSCLGVSPDGMAVATGS  334 (343)
T ss_pred             ---------------------CCceeEeeccccceEEEeeccC----CeeEEEEECCCCcEEEecc
Confidence                                 235667775 787777776433    345555443 555444433

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=97.95  E-value=0.0081  Score=55.40  Aligned_cols=149  Identities=13%  Similarity=0.065  Sum_probs=91.7

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      ...++++.++|. +.++..+|.|..|++.+-.++.-..                   ...+.+.+++... +|.|.-+..
T Consensus       248 ~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~-------------------aH~ggv~~L~~lr-~GtllSGgK  306 (626)
T KOG2106|consen  248 FVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVH-------------------AHDGGVFSLCMLR-DGTLLSGGK  306 (626)
T ss_pred             EEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEee-------------------ecCCceEEEEEec-CccEeecCc
Confidence            467999999999 7888899999999987654432111                   2234567788887 888887643


Q ss_pred             CCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEE
Q 019290          116 YFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTV  195 (343)
Q Consensus       116 ~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~  195 (343)
                      .+.|..+|-+   ++.+....-......+..++...  +.+|+++..                  +.|..=..+.+-...
T Consensus       307 DRki~~Wd~~---y~k~r~~elPe~~G~iRtv~e~~--~di~vGTtr------------------N~iL~Gt~~~~f~~~  363 (626)
T KOG2106|consen  307 DRKIILWDDN---YRKLRETELPEQFGPIRTVAEGK--GDILVGTTR------------------NFILQGTLENGFTLT  363 (626)
T ss_pred             cceEEecccc---ccccccccCchhcCCeeEEecCC--CcEEEeecc------------------ceEEEeeecCCceEE
Confidence            3447777732   33332221111234466666555  459997764                  234443333222222


Q ss_pred             eecCCCCcceeEEecCCCEEEEEEcCCCeEEEEE
Q 019290          196 MYNGLSFPNGVALSNNNSFLLLAESATLKILRFW  229 (343)
Q Consensus       196 ~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~  229 (343)
                      ........-+++.+|+.. +|++....+.+..|+
T Consensus       364 v~gh~delwgla~hps~~-q~~T~gqdk~v~lW~  396 (626)
T KOG2106|consen  364 VQGHGDELWGLATHPSKN-QLLTCGQDKHVRLWN  396 (626)
T ss_pred             EEecccceeeEEcCCChh-heeeccCcceEEEcc
Confidence            233344677889988765 567766778888887

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.94  E-value=0.0099  Score=50.91  Aligned_cols=180  Identities=17%  Similarity=0.158  Sum_probs=98.0

Q ss_pred             CCeEEEEeCCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEE
Q 019290          107 TCDLYIADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKY  186 (343)
Q Consensus       107 ~~~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~  186 (343)
                      ++.+|+++....|+.+|..+|+...-... .. +....  ..++  ++.+|+...                  .+.++.+
T Consensus        36 ~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~-~~~~~--~~~~--~~~v~v~~~------------------~~~l~~~   91 (238)
T PF13360_consen   36 GGRVYVASGDGNLYALDAKTGKVLWRFDL-PG-PISGA--PVVD--GGRVYVGTS------------------DGSLYAL   91 (238)
T ss_dssp             TTEEEEEETTSEEEEEETTTSEEEEEEEC-SS-CGGSG--EEEE--TTEEEEEET------------------TSEEEEE
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEEEeec-cc-cccce--eeec--ccccccccc------------------eeeeEec
Confidence            78999997667799999999987654332 11 11111  2444  378988663                  3479999


Q ss_pred             eCCCCceEEe-ec-C---CCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCC-CC-------Ccee
Q 019290          187 DPLKKNVTVM-YN-G---LSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPR-FP-------DNIK  253 (343)
Q Consensus       187 d~~~~~~~~~-~~-~---~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~p-------~~i~  253 (343)
                      |..+|+..-- .. .   ...........+++.+|+... .+.|+.+++.....+-+. ......+ .+       .+-.
T Consensus        92 d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~l~~~d~~tG~~~w~~-~~~~~~~~~~~~~~~~~~~~~  169 (238)
T PF13360_consen   92 DAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS-SGKLVALDPKTGKLLWKY-PVGEPRGSSPISSFSDINGSP  169 (238)
T ss_dssp             ETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET-CSEEEEEETTTTEEEEEE-ESSTT-SS--EEEETTEEEEE
T ss_pred             ccCCcceeeeeccccccccccccccCceEecCEEEEEec-cCcEEEEecCCCcEEEEe-ecCCCCCCcceeeecccccce
Confidence            9877876432 11 1   111112222233667777754 788999997642110111 1100000 00       0111


Q ss_pred             eCCCCCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECCC-CCEEEEeeCCCCCccCCceeEEEeCCEEEEec
Q 019290          254 SDSKGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVN-GNVVDVLDGNEGNTLNSVSEVQEYGEYLYTGS  332 (343)
Q Consensus       254 ~d~~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~  332 (343)
                      +-.+|.++++...                         +.++++|.. |+..  ...+..   .........++.||+++
T Consensus       170 ~~~~~~v~~~~~~-------------------------g~~~~~d~~tg~~~--w~~~~~---~~~~~~~~~~~~l~~~~  219 (238)
T PF13360_consen  170 VISDGRVYVSSGD-------------------------GRVVAVDLATGEKL--WSKPIS---GIYSLPSVDGGTLYVTS  219 (238)
T ss_dssp             ECCTTEEEEECCT-------------------------SSEEEEETTTTEEE--EEECSS----ECECEECCCTEEEEEE
T ss_pred             EEECCEEEEEcCC-------------------------CeEEEEECCCCCEE--EEecCC---CccCCceeeCCEEEEEe
Confidence            2235688888765                         235667764 5433  222211   12233556689999999


Q ss_pred             CCCCeEEEEcC
Q 019290          333 SVQPYVVVIKA  343 (343)
Q Consensus       333 ~~~~~i~~~~~  343 (343)
                       ....+..+|+
T Consensus       220 -~~~~l~~~d~  229 (238)
T PF13360_consen  220 -SDGRLYALDL  229 (238)
T ss_dssp             -TTTEEEEEET
T ss_pred             -CCCEEEEEEC
Confidence             6778877763

...

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=97.90  E-value=0.0012  Score=60.32  Aligned_cols=139  Identities=17%  Similarity=0.294  Sum_probs=91.8

Q ss_pred             CCCCeeEEEecCC-EEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCCCeEEEE
Q 019290           44 CNGEGPYVGVSDG-RILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFGLMVV  122 (343)
Q Consensus        44 ~~g~~l~~~~~~g-~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~~gi~~~  122 (343)
                      .+++-+.+++.+| .|..||..+++++.+.                    ...+....+.+++++..+.+++....++.+
T Consensus       369 ~~~e~~vigt~dgD~l~iyd~~~~e~kr~e--------------------~~lg~I~av~vs~dGK~~vvaNdr~el~vi  428 (668)
T COG4946         369 VDPEGDVIGTNDGDKLGIYDKDGGEVKRIE--------------------KDLGNIEAVKVSPDGKKVVVANDRFELWVI  428 (668)
T ss_pred             cCCcceEEeccCCceEEEEecCCceEEEee--------------------CCccceEEEEEcCCCcEEEEEcCceEEEEE
Confidence            3433455666666 7888888888777663                    455677889999844558888655569999


Q ss_pred             eCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEeecCCCC
Q 019290          123 GPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSF  202 (343)
Q Consensus       123 d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~  202 (343)
                      |.++|.++.+-...    ...+.++++.++ ++ |++=.            -+++--...|-.+|.+++++-.+.+.-..
T Consensus       429 didngnv~~idkS~----~~lItdf~~~~n-sr-~iAYa------------fP~gy~tq~Iklydm~~~Kiy~vTT~ta~  490 (668)
T COG4946         429 DIDNGNVRLIDKSE----YGLITDFDWHPN-SR-WIAYA------------FPEGYYTQSIKLYDMDGGKIYDVTTPTAY  490 (668)
T ss_pred             EecCCCeeEecccc----cceeEEEEEcCC-ce-eEEEe------------cCcceeeeeEEEEecCCCeEEEecCCccc
Confidence            99999988764332    245788899983 55 44321            01111123466788887776655544444


Q ss_pred             cceeEEecCCCEEEEEEc
Q 019290          203 PNGVALSNNNSFLLLAES  220 (343)
Q Consensus       203 ~~~i~~~~d~~~lyv~~~  220 (343)
                      -..-+|++|++.||+...
T Consensus       491 DfsPaFD~d~ryLYfLs~  508 (668)
T COG4946         491 DFSPAFDPDGRYLYFLSA  508 (668)
T ss_pred             ccCcccCCCCcEEEEEec
Confidence            556678999999998754

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.89  E-value=0.013  Score=51.73  Aligned_cols=106  Identities=21%  Similarity=0.218  Sum_probs=66.0

Q ss_pred             CCeeeEEEeCCCC-eEEEEeCCCe--EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeE-EEEeCCcccccccce
Q 019290           96 GRPLGIKFNPVTC-DLYIADAYFG--LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIV-YFTDSSIYFQRRQYF  171 (343)
Q Consensus        96 ~~p~gi~~~~~~~-~l~v~~~~~g--i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l-~v~~~~~~~~~~~~~  171 (343)
                      .+.++++.++... -+.|+- .-|  .+++|.++++.........+..  +--..++++ ||++ |.++...        
T Consensus         5 ~RgH~~a~~p~~~~avafaR-RPG~~~~v~D~~~g~~~~~~~a~~gRH--FyGHg~fs~-dG~~LytTEnd~--------   72 (305)
T PF07433_consen    5 ARGHGVAAHPTRPEAVAFAR-RPGTFALVFDCRTGQLLQRLWAPPGRH--FYGHGVFSP-DGRLLYTTENDY--------   72 (305)
T ss_pred             ccccceeeCCCCCeEEEEEe-CCCcEEEEEEcCCCceeeEEcCCCCCE--EecCEEEcC-CCCEEEEecccc--------
Confidence            4568888888333 345552 333  8899999988765443333322  222457777 5664 4444431        


Q ss_pred             eeeeecCCCceEEEEeCCCCceE---EeecCCCCcceeEEecCCCEEEEEE
Q 019290          172 MSIATGDRSGRLLKYDPLKKNVT---VMYNGLSFPNGVALSNNNSFLLLAE  219 (343)
Q Consensus       172 ~~~~~~~~~~~v~~~d~~~~~~~---~~~~~~~~~~~i~~~~d~~~lyv~~  219 (343)
                           ....|.|-.||.. ....   .+.+....|-.+.+.+|+++|.|++
T Consensus        73 -----~~g~G~IgVyd~~-~~~~ri~E~~s~GIGPHel~l~pDG~tLvVAN  117 (305)
T PF07433_consen   73 -----ETGRGVIGVYDAA-RGYRRIGEFPSHGIGPHELLLMPDGETLVVAN  117 (305)
T ss_pred             -----CCCcEEEEEEECc-CCcEEEeEecCCCcChhhEEEcCCCCEEEEEc
Confidence                 2336778888876 2222   3445667788899999999998874

>PHA02713 hypothetical protein; Provisional

Probab=97.88  E-value=0.0089  Score=58.29  Aligned_cols=221  Identities=8%  Similarity=0.044  Sum_probs=114.2

Q ss_pred             EEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCC-------CeEEEEeCCCCeE
Q 019290           57 RILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAY-------FGLMVVGPNGGQA  129 (343)
Q Consensus        57 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~-------~gi~~~d~~~~~~  129 (343)
                      .+..||+.+.+|..++..+                 . ....++.+..  ++.||+....       +.+++||+.+..+
T Consensus       273 ~v~~yd~~~~~W~~l~~mp-----------------~-~r~~~~~a~l--~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W  332 (557)
T PHA02713        273 CILVYNINTMEYSVISTIP-----------------N-HIINYASAIV--DNEIIIAGGYNFNNPSLNKVYKINIENKIH  332 (557)
T ss_pred             CEEEEeCCCCeEEECCCCC-----------------c-cccceEEEEE--CCEEEEEcCCCCCCCccceEEEEECCCCeE
Confidence            4788999998888764211                 0 0112344554  5788887431       2388999998888


Q ss_pred             EEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEeecCCCC--cceeE
Q 019290          130 QQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSF--PNGVA  207 (343)
Q Consensus       130 ~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~--~~~i~  207 (343)
                      ..++......   .-..++.-  +|.||+......            ......+.+||+.+.++..+..-...  ..+.+
T Consensus       333 ~~~~~m~~~R---~~~~~~~~--~g~IYviGG~~~------------~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~  395 (557)
T PHA02713        333 VELPPMIKNR---CRFSLAVI--DDTIYAIGGQNG------------TNVERTIECYTMGDDKWKMLPDMPIALSSYGMC  395 (557)
T ss_pred             eeCCCCcchh---hceeEEEE--CCEEEEECCcCC------------CCCCceEEEEECCCCeEEECCCCCcccccccEE
Confidence            7765443221   11233333  379998543210            01124589999998887764321111  11222


Q ss_pred             EecCCCEEEEEEcC-----------------------CCeEEEEEccCccccccceeeecCCC--CCCceeeCCCCCEEE
Q 019290          208 LSNNNSFLLLAESA-----------------------TLKILRFWLQGERTTYTPQLFAEMPR--FPDNIKSDSKGEFWI  262 (343)
Q Consensus       208 ~~~d~~~lyv~~~~-----------------------~~~i~~~~~~~~~~~~~~~~~~~~~~--~p~~i~~d~~G~lwi  262 (343)
                      .. + +.+|+..-.                       ...+.+||+..+    ........+.  ..-+++ --+|+||+
T Consensus       396 ~~-~-g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td----~W~~v~~m~~~r~~~~~~-~~~~~IYv  468 (557)
T PHA02713        396 VL-D-QYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNN----IWETLPNFWTGTIRPGVV-SHKDDIYV  468 (557)
T ss_pred             EE-C-CEEEEEeCCCcccccccccccccccccccccccceEEEECCCCC----eEeecCCCCcccccCcEE-EECCEEEE
Confidence            22 3 457886422                       235788887652    2222222211  111233 23578998


Q ss_pred             EeccCCCccccccccccccccCCCcccCCCeEEEECCCC--CEEEEeeCCCCCccCCceeEEEeCCEEEEecCCCC--eE
Q 019290          263 AMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNG--NVVDVLDGNEGNTLNSVSEVQEYGEYLYTGSSVQP--YV  338 (343)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g--~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~~~--~i  338 (343)
                      .....+....                  ...+.+|||+.  +.......|.. .  ....+..-+|+||+.+....  .+
T Consensus       469 ~GG~~~~~~~------------------~~~ve~Ydp~~~~~W~~~~~m~~~-r--~~~~~~~~~~~iyv~Gg~~~~~~~  527 (557)
T PHA02713        469 VCDIKDEKNV------------------KTCIFRYNTNTYNGWELITTTESR-L--SALHTILHDNTIMMLHCYESYMLQ  527 (557)
T ss_pred             EeCCCCCCcc------------------ceeEEEecCCCCCCeeEccccCcc-c--ccceeEEECCEEEEEeeecceeeh
Confidence            7543111000                  12578999975  45544333332 1  22333344899997665443  34


Q ss_pred             EEEc
Q 019290          339 VVIK  342 (343)
Q Consensus       339 ~~~~  342 (343)
                      -+||
T Consensus       528 e~yd  531 (557)
T PHA02713        528 DTFN  531 (557)
T ss_pred             hhcC
Confidence            4444

>PLN00181 protein SPA1-RELATED; Provisional

Probab=97.87  E-value=0.044  Score=56.02  Aligned_cols=187  Identities=11%  Similarity=0.070  Sum_probs=104.9

Q ss_pred             CceEEEcCC-CCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           37 PESLAFDCN-GEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        37 p~~l~~d~~-g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      ..++++.+. ++.+.++..++.|..||..++......                   ........++++++.++.++++..
T Consensus       535 v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~-------------------~~H~~~V~~l~~~p~~~~~L~Sgs  595 (793)
T PLN00181        535 LSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEM-------------------KEHEKRVWSIDYSSADPTLLASGS  595 (793)
T ss_pred             eeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEe-------------------cCCCCCEEEEEEcCCCCCEEEEEc
Confidence            457788764 666777888999999998765322111                   112234678889864555554434


Q ss_pred             CCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCc--
Q 019290          116 YFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKN--  192 (343)
Q Consensus       116 ~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~--  192 (343)
                      .+| |..+|.+++........  .   ..+..+.+.+.+|.++++...                 .+.|..||....+  
T Consensus       596 ~Dg~v~iWd~~~~~~~~~~~~--~---~~v~~v~~~~~~g~~latgs~-----------------dg~I~iwD~~~~~~~  653 (793)
T PLN00181        596 DDGSVKLWSINQGVSIGTIKT--K---ANICCVQFPSESGRSLAFGSA-----------------DHKVYYYDLRNPKLP  653 (793)
T ss_pred             CCCEEEEEECCCCcEEEEEec--C---CCeEEEEEeCCCCCEEEEEeC-----------------CCeEEEEECCCCCcc
Confidence            445 88899887653322111  1   234556664424665554332                 5678888876443  


Q ss_pred             eEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCcccc---ccceeeecCCCCCCceeeCCCCCEEEEecc
Q 019290          193 VTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTT---YTPQLFAEMPRFPDNIKSDSKGEFWIAMNS  266 (343)
Q Consensus       193 ~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~---~~~~~~~~~~~~p~~i~~d~~G~lwi~~~~  266 (343)
                      ...+.........+.+. ++..+ ++...++.|..|++.....-   .....+.........+.++++|.+.++...
T Consensus       654 ~~~~~~h~~~V~~v~f~-~~~~l-vs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~  728 (793)
T PLN00181        654 LCTMIGHSKTVSYVRFV-DSSTL-VSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSE  728 (793)
T ss_pred             ceEecCCCCCEEEEEEe-CCCEE-EEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeC
Confidence            22233333345667775 55544 45556889999997532100   111122111222345678888877666554

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=97.86  E-value=0.0014  Score=56.94  Aligned_cols=223  Identities=13%  Similarity=0.157  Sum_probs=118.8

Q ss_pred             cccccCCCCCCCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEE-eeecCCCccccccCCCCCcccCCCcCCeeeEEEe
Q 019290           26 YQQLQLPGVVGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTE-FATTAPHRAREICDGSTNTTLEPLCGRPLGIKFN  104 (343)
Q Consensus        26 ~~~~~~~~~~~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~  104 (343)
                      .++|-+++-+.|+|..++|||+.+..+.-+|-|-.|+..+++... +.-.+.            .........+..|.|+
T Consensus       205 ~r~IKFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAq------------d~fMMmd~aVlci~FS  272 (508)
T KOG0275|consen  205 ARSIKFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQ------------DNFMMMDDAVLCISFS  272 (508)
T ss_pred             hhheecccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhh------------cceeecccceEEEeec
Confidence            356666766789999999999988888889999999887765431 100000            0000111224456666


Q ss_pred             CCCCeEEEEeCCCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceE
Q 019290          105 PVTCDLYIADAYFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRL  183 (343)
Q Consensus       105 ~~~~~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v  183 (343)
                      . +..+..+...+| |-.+-.++|+--+-...   +....+..+.+.. |+.-..+.+-                  ...
T Consensus       273 R-DsEMlAsGsqDGkIKvWri~tG~ClRrFdr---AHtkGvt~l~FSr-D~SqiLS~sf------------------D~t  329 (508)
T KOG0275|consen  273 R-DSEMLASGSQDGKIKVWRIETGQCLRRFDR---AHTKGVTCLSFSR-DNSQILSASF------------------DQT  329 (508)
T ss_pred             c-cHHHhhccCcCCcEEEEEEecchHHHHhhh---hhccCeeEEEEcc-Ccchhhcccc------------------cce
Confidence            6 333333223444 44444445532111111   1123456677777 4654443321                  123


Q ss_pred             EEE-eCCCCce-EEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCC-CceeeCCCC-C
Q 019290          184 LKY-DPLKKNV-TVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFP-DNIKSDSKG-E  259 (343)
Q Consensus       184 ~~~-d~~~~~~-~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p-~~i~~d~~G-~  259 (343)
                      .|+ ..++|+. +.+....+..+...+.+||..+. +.+.++.|.+|+..+..-+..++....  ..| +.+..-|.. .
T Consensus       330 vRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~ii-saSsDgtvkvW~~KtteC~~Tfk~~~~--d~~vnsv~~~PKnpe  406 (508)
T KOG0275|consen  330 VRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHII-SASSDGTVKVWHGKTTECLSTFKPLGT--DYPVNSVILLPKNPE  406 (508)
T ss_pred             EEEeccccchhHHHhcCccccccceEEcCCCCeEE-EecCCccEEEecCcchhhhhhccCCCC--cccceeEEEcCCCCc
Confidence            333 3444543 23334456678888999998655 445688999998764211122222111  111 223333332 3


Q ss_pred             EEEEeccCCCccccccccccccccCCCcccCCCeEEEECCCCCEEEEeeCC
Q 019290          260 FWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGN  310 (343)
Q Consensus       260 lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~  310 (343)
                      -+|.++.                        .+.++..+-.|+.+..++..
T Consensus       407 h~iVCNr------------------------sntv~imn~qGQvVrsfsSG  433 (508)
T KOG0275|consen  407 HFIVCNR------------------------SNTVYIMNMQGQVVRSFSSG  433 (508)
T ss_pred             eEEEEcC------------------------CCeEEEEeccceEEeeeccC
Confidence            3444454                        35778788888888888654

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=97.82  E-value=0.012  Score=51.33  Aligned_cols=213  Identities=15%  Similarity=0.194  Sum_probs=123.0

Q ss_pred             CceEEEcCCCCeeEEEecCCEEEEEEcCCCC-eEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           37 PESLAFDCNGEGPYVGVSDGRILKWKAANSG-WTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        37 p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      ..+++++++|+.|.++..+..+-.||...+. ..++.                     -.....+..+++.+.+..++.-
T Consensus        68 i~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir---------------------f~spv~~~q~hp~k~n~~va~~  126 (405)
T KOG1273|consen   68 ITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR---------------------FDSPVWGAQWHPRKRNKCVATI  126 (405)
T ss_pred             eeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE---------------------ccCccceeeeccccCCeEEEEE
Confidence            5699999999999998889989999986543 22221                     1123467778886777777642


Q ss_pred             CC-eEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceE
Q 019290          116 YF-GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVT  194 (343)
Q Consensus       116 ~~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~  194 (343)
                      -. .-+.++....+.+.++...++.....+....+|+. |...++..                 ++|.+..|+..+-+..
T Consensus       127 ~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~-g~yIitGt-----------------sKGkllv~~a~t~e~v  188 (405)
T KOG1273|consen  127 MEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRR-GKYIITGT-----------------SKGKLLVYDAETLECV  188 (405)
T ss_pred             ecCCcEEEEecCCceeeccCCCccccccccccccccCC-CCEEEEec-----------------CcceEEEEecchheee
Confidence            22 23444444344555544444433344445567885 66544333                 3678888887655432


Q ss_pred             E-e-ecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC---ccccccceeeec----CCCC-CCceeeCCCCCEEEEe
Q 019290          195 V-M-YNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQG---ERTTYTPQLFAE----MPRF-PDNIKSDSKGEFWIAM  264 (343)
Q Consensus       195 ~-~-~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~---~~~~~~~~~~~~----~~~~-p~~i~~d~~G~lwi~~  264 (343)
                      . + ........-|.++..|+.+. .++.+..|..|++..   .++-++.+...+    .+.. =...+++.+|...++.
T Consensus       189 as~rits~~~IK~I~~s~~g~~li-iNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~  267 (405)
T KOG1273|consen  189 ASFRITSVQAIKQIIVSRKGRFLI-INTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAG  267 (405)
T ss_pred             eeeeechheeeeEEEEeccCcEEE-EecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEec
Confidence            1 1 01123345677777887654 456677777787542   111012221111    1111 1346788899766665


Q ss_pred             ccCCCccccccccccccccCCCcccCCCeEEEECC-CCCEEEEeeCCCC
Q 019290          265 NSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDV-NGNVVDVLDGNEG  312 (343)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~~~~~  312 (343)
                      ..  .                     .+.+|-.-. -|.++.+++.+.|
T Consensus       268 s~--~---------------------aHaLYIWE~~~GsLVKILhG~kg  293 (405)
T KOG1273|consen  268 SA--R---------------------AHALYIWEKSIGSLVKILHGTKG  293 (405)
T ss_pred             cc--c---------------------ceeEEEEecCCcceeeeecCCch
Confidence            43  1                     347777765 4888888877664

>PRK13684 Ycf48-like protein; Provisional

Probab=97.81  E-value=0.013  Score=53.23  Aligned_cols=196  Identities=14%  Similarity=0.197  Sum_probs=99.5

Q ss_pred             cccccccCCCCCCCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEE
Q 019290           24 KSYQQLQLPGVVGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKF  103 (343)
Q Consensus        24 ~~~~~~~~~~~~~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~  103 (343)
                      ...++..+|.-....+|++..+.+ .|+....+.|++-...+..|.......                +........+.+
T Consensus        35 ~~W~~~~~~~~~~l~~v~F~d~~~-g~avG~~G~il~T~DgG~tW~~~~~~~----------------~~~~~~l~~v~~   97 (334)
T PRK13684         35 SPWQVIDLPTEANLLDIAFTDPNH-GWLVGSNRTLLETNDGGETWEERSLDL----------------PEENFRLISISF   97 (334)
T ss_pred             CCcEEEecCCCCceEEEEEeCCCc-EEEEECCCEEEEEcCCCCCceECccCC----------------cccccceeeeEE
Confidence            345666777444677899986666 554446788888766666777653210                001112345666


Q ss_pred             eCCCCeEEEEeCCCe-EEEEeCCCC-eEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCc
Q 019290          104 NPVTCDLYIADAYFG-LMVVGPNGG-QAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSG  181 (343)
Q Consensus       104 ~~~~~~l~v~~~~~g-i~~~d~~~~-~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~  181 (343)
                      ..  +..|++. ..| |++- .+.| .++.+.... ..+ ..+..+.... ++.+|++..                  .+
T Consensus        98 ~~--~~~~~~G-~~g~i~~S-~DgG~tW~~~~~~~-~~~-~~~~~i~~~~-~~~~~~~g~------------------~G  152 (334)
T PRK13684         98 KG--DEGWIVG-QPSLLLHT-TDGGKNWTRIPLSE-KLP-GSPYLITALG-PGTAEMATN------------------VG  152 (334)
T ss_pred             cC--CcEEEeC-CCceEEEE-CCCCCCCeEccCCc-CCC-CCceEEEEEC-CCcceeeec------------------cc
Confidence            54  4567763 445 5554 3433 455442110 111 1233343333 255565332                  45


Q ss_pred             eEEEEeCCCCceEEeecCC-CCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeec-CCCCCCceeeCCCCC
Q 019290          182 RLLKYDPLKKNVTVMYNGL-SFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAE-MPRFPDNIKSDSKGE  259 (343)
Q Consensus       182 ~v~~~d~~~~~~~~~~~~~-~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~G~  259 (343)
                      .|++-+-.+...+.+..+. ...+++.+.+++. ++++. ..+.+++-..++.   ........ ......++.+.++|+
T Consensus       153 ~i~~S~DgG~tW~~~~~~~~g~~~~i~~~~~g~-~v~~g-~~G~i~~s~~~gg---~tW~~~~~~~~~~l~~i~~~~~g~  227 (334)
T PRK13684        153 AIYRTTDGGKNWEALVEDAAGVVRNLRRSPDGK-YVAVS-SRGNFYSTWEPGQ---TAWTPHQRNSSRRLQSMGFQPDGN  227 (334)
T ss_pred             eEEEECCCCCCceeCcCCCcceEEEEEECCCCe-EEEEe-CCceEEEEcCCCC---CeEEEeeCCCcccceeeeEcCCCC
Confidence            6777654444555443332 2356777777764 33333 3566665422221   11222211 112345667778889


Q ss_pred             EEEEecc
Q 019290          260 FWIAMNS  266 (343)
Q Consensus       260 lwi~~~~  266 (343)
                      +|++...
T Consensus       228 ~~~vg~~  234 (334)
T PRK13684        228 LWMLARG  234 (334)
T ss_pred             EEEEecC
Confidence            9988765

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=97.81  E-value=0.0047  Score=54.18  Aligned_cols=151  Identities=19%  Similarity=0.141  Sum_probs=96.3

Q ss_pred             CeeeEEEeCCCCeEEEEeCC-CeEEEEeCCCCeEEEcccc--cC--CCC-ccCcceeEEeCCCCeEEEEeCCcccccccc
Q 019290           97 RPLGIKFNPVTCDLYIADAY-FGLMVVGPNGGQAQQLASS--AG--GIP-FRFTNDLDIDPNTGIVYFTDSSIYFQRRQY  170 (343)
Q Consensus        97 ~p~gi~~~~~~~~l~v~~~~-~gi~~~d~~~~~~~~~~~~--~~--~~~-~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~  170 (343)
                      ..|.|++ . ++.+|+.++. +.+..+++. ..+.+..+.  ..  .+. -=+.|++|.+. +.-.|++.-+..-....|
T Consensus       104 diHdia~-~-~~~l~fVNT~fSCLatl~~~-~SF~P~WkPpFIs~la~eDRCHLNGlA~~~-g~p~yVTa~~~sD~~~gW  179 (335)
T TIGR03032       104 DAHDLAL-G-AGRLLFVNTLFSCLATVSPD-YSFVPLWKPPFISKLAPEDRCHLNGMALDD-GEPRYVTALSQSDVADGW  179 (335)
T ss_pred             chhheee-c-CCcEEEEECcceeEEEECCC-CccccccCCccccccCccCceeecceeeeC-CeEEEEEEeeccCCcccc
Confidence            4678888 3 6788887665 448888775 334333221  10  111 13579999987 456888764421111122


Q ss_pred             eeeeeecCCCceEEEEeCCCCceEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCC
Q 019290          171 FMSIATGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPD  250 (343)
Q Consensus       171 ~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~  250 (343)
                      ..+    ...+++. +|..+++  .+..++..|.+-.++ +| .||+.++..+.|.++|.++    ++.+.++..+++|.
T Consensus       180 R~~----~~~gG~v-idv~s~e--vl~~GLsmPhSPRWh-dg-rLwvldsgtGev~~vD~~~----G~~e~Va~vpG~~r  246 (335)
T TIGR03032       180 REG----RRDGGCV-IDIPSGE--VVASGLSMPHSPRWY-QG-KLWLLNSGRGELGYVDPQA----GKFQPVAFLPGFTR  246 (335)
T ss_pred             ccc----ccCCeEE-EEeCCCC--EEEcCccCCcCCcEe-CC-eEEEEECCCCEEEEEcCCC----CcEEEEEECCCCCc
Confidence            111    1133443 6666554  467888999998887 44 4999999999999999875    55667778999999


Q ss_pred             ceeeCCCCCEE-EEecc
Q 019290          251 NIKSDSKGEFW-IAMNS  266 (343)
Q Consensus       251 ~i~~d~~G~lw-i~~~~  266 (343)
                      |+.+.  |++. |+...
T Consensus       247 GL~f~--G~llvVgmSk  261 (335)
T TIGR03032       247 GLAFA--GDFAFVGLSK  261 (335)
T ss_pred             cccee--CCEEEEEecc
Confidence            99988  7655 55543

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=97.81  E-value=0.0081  Score=53.57  Aligned_cols=101  Identities=15%  Similarity=0.190  Sum_probs=57.9

Q ss_pred             CceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeC----CCCeEEE
Q 019290           37 PESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNP----VTCDLYI  112 (343)
Q Consensus        37 p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~----~~~~l~v  112 (343)
                      ..++++.|||..+-.+..+|.|..|||.+++..-                  .........+.+++..|    ...+.+.
T Consensus       160 VlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g------------------~~l~gH~K~It~Lawep~hl~p~~r~la  221 (480)
T KOG0271|consen  160 VLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIG------------------RALRGHKKWITALAWEPLHLVPPCRRLA  221 (480)
T ss_pred             EEEEEECCCcchhhccccCCeEEEecCCCCCccc------------------ccccCcccceeEEeecccccCCCcccee
Confidence            6689999999988888999999999998764210                  00001111234444432    1334444


Q ss_pred             EeCCCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEe
Q 019290          113 ADAYFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTD  160 (343)
Q Consensus       113 ~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~  160 (343)
                      +...+| +..+|...++........    ...+..+.... +|-||-+-
T Consensus       222 s~skDg~vrIWd~~~~~~~~~lsgH----T~~VTCvrwGG-~gliySgS  265 (480)
T KOG0271|consen  222 SSSKDGSVRIWDTKLGTCVRTLSGH----TASVTCVRWGG-EGLIYSGS  265 (480)
T ss_pred             cccCCCCEEEEEccCceEEEEeccC----ccceEEEEEcC-CceEEecC
Confidence            434455 888898876554432211    12345555555 36666543

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=97.79  E-value=0.0026  Score=61.81  Aligned_cols=188  Identities=12%  Similarity=0.109  Sum_probs=118.1

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeE-EeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEe
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWT-EFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIAD  114 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~  114 (343)
                      ...++|.+.=|++.+++...|.|-+|+.+.+... .|..                 .+.......|++.|. -+++.|+.
T Consensus       450 ~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~-----------------~~ah~~~V~gla~D~-~n~~~vsa  511 (910)
T KOG1539|consen  450 NATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGD-----------------SPAHKGEVTGLAVDG-TNRLLVSA  511 (910)
T ss_pred             ceEEEEEeccCceEEEeccCCeEEEEEcccCeeeccccc-----------------CccccCceeEEEecC-CCceEEEc
Confidence            4668888999998889999999999998775322 2210                 012334567999997 78888887


Q ss_pred             CCCeE-EEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCce
Q 019290          115 AYFGL-MVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNV  193 (343)
Q Consensus       115 ~~~gi-~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~  193 (343)
                      ...|+ ..+|..+.....  ....+   ..+..+..... ..+++....                 .-.|..+|..+.++
T Consensus       512 ~~~Gilkfw~f~~k~l~~--~l~l~---~~~~~iv~hr~-s~l~a~~~d-----------------df~I~vvD~~t~kv  568 (910)
T KOG1539|consen  512 GADGILKFWDFKKKVLKK--SLRLG---SSITGIVYHRV-SDLLAIALD-----------------DFSIRVVDVVTRKV  568 (910)
T ss_pred             cCcceEEEEecCCcceee--eeccC---CCcceeeeeeh-hhhhhhhcC-----------------ceeEEEEEchhhhh
Confidence            77884 456776543221  11111   23444444442 333332211                 34588888776665


Q ss_pred             E-EeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEeccCCC
Q 019290          194 T-VMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNSARG  269 (343)
Q Consensus       194 ~-~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~~~~~  269 (343)
                      . .+.......++++|++||+.|..+ +.++.|..||+.+...   +..+. .+.-+-.+...|.|.+..+.+.+..
T Consensus       569 vR~f~gh~nritd~~FS~DgrWlisa-smD~tIr~wDlpt~~l---ID~~~-vd~~~~sls~SPngD~LAT~Hvd~~  640 (910)
T KOG1539|consen  569 VREFWGHGNRITDMTFSPDGRWLISA-SMDSTIRTWDLPTGTL---IDGLL-VDSPCTSLSFSPNGDFLATVHVDQN  640 (910)
T ss_pred             hHHhhccccceeeeEeCCCCcEEEEe-ecCCcEEEEeccCcce---eeeEe-cCCcceeeEECCCCCEEEEEEecCc
Confidence            4 344556778999999999976655 4678999999875322   11221 2222456777888888877776433

>KOG4328 consensus WD40 protein [Function unknown]

Probab=97.78  E-value=0.0043  Score=56.36  Aligned_cols=242  Identities=15%  Similarity=0.085  Sum_probs=130.2

Q ss_pred             CceEEEcCC-CCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           37 PESLAFDCN-GEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        37 p~~l~~d~~-g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      ..+|.+.|. -..+|....+|.|...|.++..+.++...                 ......-.++.+..+++.+++++.
T Consensus       237 Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~-----------------~~d~~~fs~~d~~~e~~~vl~~~~  299 (498)
T KOG4328|consen  237 VSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSL-----------------DTDNIWFSSLDFSAESRSVLFGDN  299 (498)
T ss_pred             ccceEecCCChhheeeeccCceeeeeeecchhhHHHhhc-----------------CccceeeeeccccCCCccEEEeec
Confidence            457777764 23567777777777777766544333210                 000111235566666788999875


Q ss_pred             CCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCC--CCce
Q 019290          116 YFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPL--KKNV  193 (343)
Q Consensus       116 ~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~--~~~~  193 (343)
                      ...+..+|+++++-+........   ..+.++++.|. ..-++++.+.                ...+-.||..  .++.
T Consensus       300 ~G~f~~iD~R~~~s~~~~~~lh~---kKI~sv~~NP~-~p~~laT~s~----------------D~T~kIWD~R~l~~K~  359 (498)
T KOG4328|consen  300 VGNFNVIDLRTDGSEYENLRLHK---KKITSVALNPV-CPWFLATASL----------------DQTAKIWDLRQLRGKA  359 (498)
T ss_pred             ccceEEEEeecCCccchhhhhhh---cccceeecCCC-Cchheeeccc----------------CcceeeeehhhhcCCC
Confidence            54467788877654333222222   25788999985 5545544331                2223334432  1222


Q ss_pred             EEeec---CCCCcceeEEecCCCEEEEEEcCCCeEEEEEcc--CccccccceeeecCCC-----CCCceeeCCCCCEEEE
Q 019290          194 TVMYN---GLSFPNGVALSNNNSFLLLAESATLKILRFWLQ--GERTTYTPQLFAEMPR-----FPDNIKSDSKGEFWIA  263 (343)
Q Consensus       194 ~~~~~---~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~-----~p~~i~~d~~G~lwi~  263 (343)
                      +.+..   .-...+..+|+|.+..| ++....+.|.+|+-.  ++.. .....+.....     .|---+.|++-++.+.
T Consensus       360 sp~lst~~HrrsV~sAyFSPs~gtl-~TT~~D~~IRv~dss~~sa~~-~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~v  437 (498)
T KOG4328|consen  360 SPFLSTLPHRRSVNSAYFSPSGGTL-LTTCQDNEIRVFDSSCISAKD-EPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVV  437 (498)
T ss_pred             CcceecccccceeeeeEEcCCCCce-EeeccCCceEEeecccccccC-CccceeeccCcccccccchhheeCCCccEEEE
Confidence            11222   22346788999999884 555678899999852  1111 11111111111     1223356888777666


Q ss_pred             eccCCCccccccccccccccCCCcccCCCeEEEECCCCCE-EEEeeCCCCCccCCceeEEEeCCEEEEecCCCCeEEEE
Q 019290          264 MNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNV-VDVLDGNEGNTLNSVSEVQEYGEYLYTGSSVQPYVVVI  341 (343)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~-~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~~~~i~~~  341 (343)
                      .+.                        ...|-.||+++++ +..+++|....+..+-.+.+.+..+.-|+..+..|+++
T Consensus       438 g~~------------------------~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vf  492 (498)
T KOG4328|consen  438 GRY------------------------PRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVF  492 (498)
T ss_pred             ecc------------------------CcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEE
Confidence            554                        2256788998766 55566665533444444444444455555555555554

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=97.77  E-value=0.007  Score=53.52  Aligned_cols=183  Identities=14%  Similarity=0.064  Sum_probs=103.8

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      ...++++||-...+.++..++.+-.+|..++.++.-.                   ........++++++..-.||.+. 
T Consensus       153 WVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkltl-------------------tGhi~~vr~vavS~rHpYlFs~g-  212 (460)
T KOG0285|consen  153 WVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTL-------------------TGHIETVRGVAVSKRHPYLFSAG-  212 (460)
T ss_pred             eEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEee-------------------cchhheeeeeeecccCceEEEec-
Confidence            3679999999774446678888999999987654321                   12233467899987455666663 


Q ss_pred             CCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCc-e
Q 019290          116 YFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKN-V  193 (343)
Q Consensus       116 ~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~-~  193 (343)
                      .++ |-.+|++..++.+-..   + .+..+..+++.|. -++.++...                 ...+-.+|..++. +
T Consensus       213 edk~VKCwDLe~nkvIR~Yh---G-HlS~V~~L~lhPT-ldvl~t~gr-----------------Dst~RvWDiRtr~~V  270 (460)
T KOG0285|consen  213 EDKQVKCWDLEYNKVIRHYH---G-HLSGVYCLDLHPT-LDVLVTGGR-----------------DSTIRVWDIRTRASV  270 (460)
T ss_pred             CCCeeEEEechhhhhHHHhc---c-ccceeEEEecccc-ceeEEecCC-----------------cceEEEeeecccceE
Confidence            444 7889998766543221   1 2355778888885 666665433                 2334455665443 3


Q ss_pred             EEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEe
Q 019290          194 TVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAM  264 (343)
Q Consensus       194 ~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~  264 (343)
                      ..+...-.....+...+-...+ ++.+.+..|..||+....   ....+..-......++..|+-+++.+.
T Consensus       271 ~~l~GH~~~V~~V~~~~~dpqv-it~S~D~tvrlWDl~agk---t~~tlt~hkksvral~lhP~e~~fASa  337 (460)
T KOG0285|consen  271 HVLSGHTNPVASVMCQPTDPQV-ITGSHDSTVRLWDLRAGK---TMITLTHHKKSVRALCLHPKENLFASA  337 (460)
T ss_pred             EEecCCCCcceeEEeecCCCce-EEecCCceEEEeeeccCc---eeEeeecccceeeEEecCCchhhhhcc
Confidence            3333333334444443333333 456678899999986422   112222211123445555555555443

>PTZ00420 coronin; Provisional

Probab=97.76  E-value=0.047  Score=53.00  Aligned_cols=161  Identities=13%  Similarity=0.101  Sum_probs=92.8

Q ss_pred             CCceEEEcCC-CCeeEEEecCCEEEEEEcCCCCe--EEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEE
Q 019290           36 GPESLAFDCN-GEGPYVGVSDGRILKWKAANSGW--TEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYI  112 (343)
Q Consensus        36 ~p~~l~~d~~-g~~l~~~~~~g~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v  112 (343)
                      ...++++.++ ++.+.++..++.|..||..++..  ..+...       .      .........+..+++++....+++
T Consensus        76 ~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p-------~------~~L~gH~~~V~sVaf~P~g~~iLa  142 (568)
T PTZ00420         76 SILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDP-------Q------CILKGHKKKISIIDWNPMNYYIMC  142 (568)
T ss_pred             CEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccc-------e------EEeecCCCcEEEEEECCCCCeEEE
Confidence            4678999986 77778888999999999764321  100000       0      000112234678899984444544


Q ss_pred             EeCCCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCC
Q 019290          113 ADAYFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKK  191 (343)
Q Consensus       113 ~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~  191 (343)
                      +...++ |..+|.++++......  ..   ..+.++++++ +|.++++...                 .+.|..||+.++
T Consensus       143 SgS~DgtIrIWDl~tg~~~~~i~--~~---~~V~Slswsp-dG~lLat~s~-----------------D~~IrIwD~Rsg  199 (568)
T PTZ00420        143 SSGFDSFVNIWDIENEKRAFQIN--MP---KKLSSLKWNI-KGNLLSGTCV-----------------GKHMHIIDPRKQ  199 (568)
T ss_pred             EEeCCCeEEEEECCCCcEEEEEe--cC---CcEEEEEECC-CCCEEEEEec-----------------CCEEEEEECCCC
Confidence            433344 8899998776432211  11   3478899999 5888775533                 456888898876


Q ss_pred             ceEE-eecCCCCccee-----EEecCCCEEEEEEcCC---CeEEEEEccC
Q 019290          192 NVTV-MYNGLSFPNGV-----ALSNNNSFLLLAESAT---LKILRFWLQG  232 (343)
Q Consensus       192 ~~~~-~~~~~~~~~~i-----~~~~d~~~lyv~~~~~---~~i~~~~~~~  232 (343)
                      +... +..........     .++++++.+..+....   +.|..||+..
T Consensus       200 ~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~  249 (568)
T PTZ00420        200 EIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKN  249 (568)
T ss_pred             cEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCC
Confidence            5432 22111111111     1335666655544433   3699999763

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=97.74  E-value=0.0016  Score=59.22  Aligned_cols=157  Identities=20%  Similarity=0.282  Sum_probs=88.1

Q ss_pred             CeeeEEEeCCCCeEEEEeCCCeEEEEeCCCCeE-EEcccc--cCCCCccCcceeEEeC---CCCeEEEEeCCcccccccc
Q 019290           97 RPLGIKFNPVTCDLYIADAYFGLMVVGPNGGQA-QQLASS--AGGIPFRFTNDLDIDP---NTGIVYFTDSSIYFQRRQY  170 (343)
Q Consensus        97 ~p~gi~~~~~~~~l~v~~~~~gi~~~d~~~~~~-~~~~~~--~~~~~~~~~~~i~~d~---~dg~l~v~~~~~~~~~~~~  170 (343)
                      .|.+|++.+ ++++||+.....|++++.+ +.. ..+...  ........+.++++++   .++.+|+.-.....     
T Consensus         3 ~P~~~a~~p-dG~l~v~e~~G~i~~~~~~-g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~-----   75 (331)
T PF07995_consen    3 NPRSMAFLP-DGRLLVAERSGRIWVVDKD-GSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADE-----   75 (331)
T ss_dssp             SEEEEEEET-TSCEEEEETTTEEEEEETT-TEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-T-----
T ss_pred             CceEEEEeC-CCcEEEEeCCceEEEEeCC-CcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccC-----
Confidence            689999999 7999999764459999844 443 332221  1122235678999998   13789986542100     


Q ss_pred             eeeeeecCCCceEEEEeCCCC--c---eEEeec---C---CC-CcceeEEecCCCEEEEEEcC-------------CCeE
Q 019290          171 FMSIATGDRSGRLLKYDPLKK--N---VTVMYN---G---LS-FPNGVALSNNNSFLLLAESA-------------TLKI  225 (343)
Q Consensus       171 ~~~~~~~~~~~~v~~~d~~~~--~---~~~~~~---~---~~-~~~~i~~~~d~~~lyv~~~~-------------~~~i  225 (343)
                          .......+|.|+....+  .   .+.+..   .   .. ....++|.+|| .||++--.             .+.|
T Consensus        76 ----~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG-~LYvs~G~~~~~~~~~~~~~~~G~i  150 (331)
T PF07995_consen   76 ----DGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDG-KLYVSVGDGGNDDNAQDPNSLRGKI  150 (331)
T ss_dssp             ----SSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTS-EEEEEEB-TTTGGGGCSTTSSTTEE
T ss_pred             ----CCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCC-cEEEEeCCCCCcccccccccccceE
Confidence                00001235666654322  1   122221   1   11 23568999998 78986321             5789


Q ss_pred             EEEEccCcccc---------ccceeeec-CCCCCCceeeCCC-CCEEEEecc
Q 019290          226 LRFWLQGERTT---------YTPQLFAE-MPRFPDNIKSDSK-GEFWIAMNS  266 (343)
Q Consensus       226 ~~~~~~~~~~~---------~~~~~~~~-~~~~p~~i~~d~~-G~lwi~~~~  266 (343)
                      .+++.++....         ...++++. +-+ |-++++|+. |+||++++.
T Consensus       151 lri~~dG~~p~dnP~~~~~~~~~~i~A~GlRN-~~~~~~d~~tg~l~~~d~G  201 (331)
T PF07995_consen  151 LRIDPDGSIPADNPFVGDDGADSEIYAYGLRN-PFGLAFDPNTGRLWAADNG  201 (331)
T ss_dssp             EEEETTSSB-TTSTTTTSTTSTTTEEEE--SE-EEEEEEETTTTEEEEEEE-
T ss_pred             EEecccCcCCCCCccccCCCceEEEEEeCCCc-cccEEEECCCCcEEEEccC
Confidence            99987763100         12234443 112 667899998 999999875

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PRK01029 tolB translocation protein TolB; Provisional

Probab=97.72  E-value=0.045  Score=51.65  Aligned_cols=120  Identities=12%  Similarity=0.154  Sum_probs=63.1

Q ss_pred             eEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCC-eEEEEeCCcccccccceeeeeecCCCceEEE--EeCCC---C
Q 019290          118 GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTG-IVYFTDSSIYFQRRQYFMSIATGDRSGRLLK--YDPLK---K  191 (343)
Q Consensus       118 gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg-~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~--~d~~~---~  191 (343)
                      .|+.+++++++.+.+.... +    .....++.| || .|.++....             +  ...++.  ++.++   +
T Consensus       212 ~I~~~~l~~g~~~~lt~~~-g----~~~~p~wSP-DG~~Laf~s~~~-------------g--~~di~~~~~~~~~g~~g  270 (428)
T PRK01029        212 KIFLGSLENPAGKKILALQ-G----NQLMPTFSP-RKKLLAFISDRY-------------G--NPDLFIQSFSLETGAIG  270 (428)
T ss_pred             eEEEEECCCCCceEeecCC-C----CccceEECC-CCCEEEEEECCC-------------C--CcceeEEEeecccCCCC
Confidence            4999999988777664321 1    122457778 56 455543210             0  112443  34432   3


Q ss_pred             ceEEeecCC-CCcceeEEecCCCEEEEEEcCC--CeEEEEEccCccccccceeeecCCCCCCceeeCCCCCE
Q 019290          192 NVTVMYNGL-SFPNGVALSNNNSFLLLAESAT--LKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEF  260 (343)
Q Consensus       192 ~~~~~~~~~-~~~~~i~~~~d~~~lyv~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l  260 (343)
                      +.+.+.... ......+++|||+.|+++...+  ..||++++++..  +..+.+....+.......++||+.
T Consensus       271 ~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g--~~~~~lt~~~~~~~~p~wSPDG~~  340 (428)
T PRK01029        271 KPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG--QSPRLLTKKYRNSSCPAWSPDGKK  340 (428)
T ss_pred             cceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccc--cceEEeccCCCCccceeECCCCCE
Confidence            444444322 2334568999999877765433  368888765321  122233222222334567888863

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=97.65  E-value=0.036  Score=49.18  Aligned_cols=234  Identities=15%  Similarity=0.120  Sum_probs=124.9

Q ss_pred             CCCceEEEcCCCCeeEEEecCCEEEEEEcCC-CCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEE
Q 019290           35 VGPESLAFDCNGEGPYVGVSDGRILKWKAAN-SGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIA  113 (343)
Q Consensus        35 ~~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~  113 (343)
                      ..-+-+.+-|.+.++.++..+|.++-|.... +..+.+....     .+              ...|- +.+++.++..+
T Consensus       149 ~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~-----~~--------------ct~G~-f~pdGKr~~tg  208 (399)
T KOG0296|consen  149 EDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHN-----SP--------------CTCGE-FIPDGKRILTG  208 (399)
T ss_pred             CceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCC-----CC--------------ccccc-ccCCCceEEEE
Confidence            3567888899999888999999999998766 3344442100     00              11222 33436788888


Q ss_pred             eCCCeEEEEeCCCCeEEEcccccCCCC-----ccCcceeEEeC-CCCeEEEEeCCcccccccceeeeeecCCCceEEEEe
Q 019290          114 DAYFGLMVVGPNGGQAQQLASSAGGIP-----FRFTNDLDIDP-NTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYD  187 (343)
Q Consensus       114 ~~~~gi~~~d~~~~~~~~~~~~~~~~~-----~~~~~~i~~d~-~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d  187 (343)
                      ....-|..+|+++++........++.+     .+......++. .++..++.+..                 .++|...+
T Consensus       209 y~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~-----------------sgKVv~~~  271 (399)
T KOG0296|consen  209 YDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNG-----------------SGKVVNCN  271 (399)
T ss_pred             ecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccc-----------------cceEEEec
Confidence            543348999999996543322222111     11111122221 12333332221                 33333332


Q ss_pred             CC-CCceEEeecC-CCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCc---eeeCCCCCEEE
Q 019290          188 PL-KKNVTVMYNG-LSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDN---IKSDSKGEFWI  262 (343)
Q Consensus       188 ~~-~~~~~~~~~~-~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~---i~~d~~G~lwi  262 (343)
                      .. ......-... ......+.++.+- -|..+..-.++|..||+..    .+.+....   ++++   +...+...|+.
T Consensus       272 n~~~~~l~~~~e~~~esve~~~~ss~l-pL~A~G~vdG~i~iyD~a~----~~~R~~c~---he~~V~~l~w~~t~~l~t  343 (399)
T KOG0296|consen  272 NGTVPELKPSQEELDESVESIPSSSKL-PLAACGSVDGTIAIYDLAA----STLRHICE---HEDGVTKLKWLNTDYLLT  343 (399)
T ss_pred             CCCCccccccchhhhhhhhhccccccc-chhhcccccceEEEEeccc----chhheecc---CCCceEEEEEcCcchhee
Confidence            11 1110000000 0111222232222 2555666789999999876    33344333   2334   34555667787


Q ss_pred             EeccCCCccccccccccccccCCCcccCCCeEEEECC-CCCEEEEeeCCCCCccCCceeE-EEeCCEEEEecCCCCeEEE
Q 019290          263 AMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDV-NGNVVDVLDGNEGNTLNSVSEV-QEYGEYLYTGSSVQPYVVV  340 (343)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~~~~~~~~~~~~~~-~~~~g~l~i~~~~~~~i~~  340 (343)
                      ++.+                         +.|+.+|. .|+.+..+.....    .+... ...++++.++....+...+
T Consensus       344 ~c~~-------------------------g~v~~wDaRtG~l~~~y~GH~~----~Il~f~ls~~~~~vvT~s~D~~a~V  394 (399)
T KOG0296|consen  344 ACAN-------------------------GKVRQWDARTGQLKFTYTGHQM----GILDFALSPQKRLVVTVSDDNTALV  394 (399)
T ss_pred             eccC-------------------------ceEEeeeccccceEEEEecCch----heeEEEEcCCCcEEEEecCCCeEEE
Confidence            7765                         57888997 5888888875332    33333 3337888888888888777


Q ss_pred             Ec
Q 019290          341 IK  342 (343)
Q Consensus       341 ~~  342 (343)
                      ++
T Consensus       395 F~  396 (399)
T KOG0296|consen  395 FE  396 (399)
T ss_pred             Ee
Confidence            64

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=97.65  E-value=0.0022  Score=58.52  Aligned_cols=182  Identities=12%  Similarity=0.145  Sum_probs=113.1

Q ss_pred             CceEEEcC-CCCeeEEEecCCEEEEEEcCC--CCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEE
Q 019290           37 PESLAFDC-NGEGPYVGVSDGRILKWKAAN--SGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIA  113 (343)
Q Consensus        37 p~~l~~d~-~g~~l~~~~~~g~i~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~  113 (343)
                      ..++.+.+ .+.++..+..++.|+.|+.-.  +-+..|..                    ....+..+.++.++..++-+
T Consensus       217 vsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~g--------------------H~k~Vrd~~~s~~g~~fLS~  276 (503)
T KOG0282|consen  217 VSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKG--------------------HRKPVRDASFNNCGTSFLSA  276 (503)
T ss_pred             cchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhc--------------------chhhhhhhhccccCCeeeee
Confidence            45666777 577666778899999988643  22323321                    11123467777733345555


Q ss_pred             eCCCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCc
Q 019290          114 DAYFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKN  192 (343)
Q Consensus       114 ~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~  192 (343)
                       ..++ |-.+|.+||+...-....     ..+..+.+.|.+.+++++..+                 .++|..||..+++
T Consensus       277 -sfD~~lKlwDtETG~~~~~f~~~-----~~~~cvkf~pd~~n~fl~G~s-----------------d~ki~~wDiRs~k  333 (503)
T KOG0282|consen  277 -SFDRFLKLWDTETGQVLSRFHLD-----KVPTCVKFHPDNQNIFLVGGS-----------------DKKIRQWDIRSGK  333 (503)
T ss_pred             -ecceeeeeeccccceEEEEEecC-----CCceeeecCCCCCcEEEEecC-----------------CCcEEEEeccchH
Confidence             4445 888999999876543322     346778888842277775443                 6789999998777


Q ss_pred             eE-EeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecC--CCCCCceeeCCCCCEEEEecc
Q 019290          193 VT-VMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEM--PRFPDNIKSDSKGEFWIAMNS  266 (343)
Q Consensus       193 ~~-~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~~~p~~i~~d~~G~lwi~~~~  266 (343)
                      +. .+...+...+.|.|-++++. +++.+..+.+.+|+...+-.   ++.+...  -..| .+...|.|..+++...
T Consensus       334 vvqeYd~hLg~i~~i~F~~~g~r-FissSDdks~riWe~~~~v~---ik~i~~~~~hsmP-~~~~~P~~~~~~aQs~  405 (503)
T KOG0282|consen  334 VVQEYDRHLGAILDITFVDEGRR-FISSSDDKSVRIWENRIPVP---IKNIADPEMHTMP-CLTLHPNGKWFAAQSM  405 (503)
T ss_pred             HHHHHHhhhhheeeeEEccCCce-EeeeccCccEEEEEcCCCcc---chhhcchhhccCc-ceecCCCCCeehhhcc
Confidence            53 34456677888989877764 66767788898888654211   1122111  1122 4667788877777665

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.62  E-value=0.02  Score=55.89  Aligned_cols=214  Identities=14%  Similarity=0.103  Sum_probs=118.2

Q ss_pred             CEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCCC-------eEEEEeCCCCe
Q 019290           56 GRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYF-------GLMVVGPNGGQ  128 (343)
Q Consensus        56 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~~-------gi~~~d~~~~~  128 (343)
                      ..+..||+.++.|...+..+                  ......++++.  +|.||+....+       .+.+||+.+.+
T Consensus       301 ~~ve~yd~~~~~w~~~a~m~------------------~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~~  360 (571)
T KOG4441|consen  301 RSVECYDPKTNEWSSLAPMP------------------SPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTNQ  360 (571)
T ss_pred             ceeEEecCCcCcEeecCCCC------------------cccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCCc
Confidence            45778999998888764321                  11123567777  57899874433       38899999999


Q ss_pred             EEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEeecCCCCcceeEE
Q 019290          129 AQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVAL  208 (343)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~i~~  208 (343)
                      +..++......   .-.+++.-  +|.||+......            ...-..+.+||+.+.+++..........+.++
T Consensus       361 W~~~a~M~~~R---~~~~v~~l--~g~iYavGG~dg------------~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv  423 (571)
T KOG4441|consen  361 WTPVAPMNTKR---SDFGVAVL--DGKLYAVGGFDG------------EKSLNSVECYDPVTNKWTPVAPMLTRRSGHGV  423 (571)
T ss_pred             eeccCCccCcc---ccceeEEE--CCEEEEEecccc------------ccccccEEEecCCCCcccccCCCCcceeeeEE
Confidence            88766554332   22344444  389998554310            01134699999998888765543333333333


Q ss_pred             ecCCCEEEEEEcC------CCeEEEEEccCccccccceeeecCCCCC--CceeeCCCCCEEEEeccCCCccccccccccc
Q 019290          209 SNNNSFLLLAESA------TLKILRFWLQGERTTYTPQLFAEMPRFP--DNIKSDSKGEFWIAMNSARGKIESNKKTAFC  280 (343)
Q Consensus       209 ~~d~~~lyv~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~~p--~~i~~d~~G~lwi~~~~~~~~~~~~~~~~~~  280 (343)
                      ..-++.+|+..-.      -..+.+||+.+    ...+..+..+...  .+++. -+|.||+.....+...         
T Consensus       424 ~~~~g~iYi~GG~~~~~~~l~sve~YDP~t----~~W~~~~~M~~~R~~~g~a~-~~~~iYvvGG~~~~~~---------  489 (571)
T KOG4441|consen  424 AVLGGKLYIIGGGDGSSNCLNSVECYDPET----NTWTLIAPMNTRRSGFGVAV-LNGKIYVVGGFDGTSA---------  489 (571)
T ss_pred             EEECCEEEEEcCcCCCccccceEEEEcCCC----CceeecCCcccccccceEEE-ECCEEEEECCccCCCc---------
Confidence            3334568886431      25677888765    3333333322111  22333 2578888765422111         


Q ss_pred             cccCCCcccCCCeEEEECCCCCEEEEeeCCCCCccCCceeEEEeCCEEEEec
Q 019290          281 EETAKPWFLRDPVGVKFDVNGNVVDVLDGNEGNTLNSVSEVQEYGEYLYTGS  332 (343)
Q Consensus       281 ~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~  332 (343)
                                ...|-+|||..+.-..+..-..  ......+...++.||+.+
T Consensus       490 ----------~~~VE~ydp~~~~W~~v~~m~~--~rs~~g~~~~~~~ly~vG  529 (571)
T KOG4441|consen  490 ----------LSSVERYDPETNQWTMVAPMTS--PRSAVGVVVLGGKLYAVG  529 (571)
T ss_pred             ----------cceEEEEcCCCCceeEcccCcc--ccccccEEEECCEEEEEe
Confidence                      1358889997654444331111  122233344477787543

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=97.60  E-value=0.00044  Score=49.32  Aligned_cols=67  Identities=16%  Similarity=0.245  Sum_probs=45.4

Q ss_pred             eEEEcCC-CCeeEEEe-----------------cCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeee
Q 019290           39 SLAFDCN-GEGPYVGV-----------------SDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLG  100 (343)
Q Consensus        39 ~l~~d~~-g~~l~~~~-----------------~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g  100 (343)
                      +++++++ |.++|+..                 .+|+|++|||.+++.+.+.                    .....|+|
T Consensus         2 dldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~--------------------~~L~fpNG   61 (89)
T PF03088_consen    2 DLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLL--------------------DGLYFPNG   61 (89)
T ss_dssp             EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEE--------------------EEESSEEE
T ss_pred             ceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEeh--------------------hCCCccCe
Confidence            6888888 77555543                 3589999999998877664                    23457899


Q ss_pred             EEEeCCCCeEEEEeCC-CeEEEEeCC
Q 019290          101 IKFNPVTCDLYIADAY-FGLMVVGPN  125 (343)
Q Consensus       101 i~~~~~~~~l~v~~~~-~gi~~~d~~  125 (343)
                      +++++++..|+|+.+. ..|.++-++
T Consensus        62 Vals~d~~~vlv~Et~~~Ri~rywl~   87 (89)
T PF03088_consen   62 VALSPDESFVLVAETGRYRILRYWLK   87 (89)
T ss_dssp             EEE-TTSSEEEEEEGGGTEEEEEESS
T ss_pred             EEEcCCCCEEEEEeccCceEEEEEEe
Confidence            9999966678888654 348877654

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=97.59  E-value=0.01  Score=55.54  Aligned_cols=180  Identities=16%  Similarity=0.230  Sum_probs=99.5

Q ss_pred             cccccCCCCCCCceEEEcCCCCeeE-EEecCCEEEEEEcCCCCeE----------EeeecCCC----------ccccccC
Q 019290           26 YQQLQLPGVVGPESLAFDCNGEGPY-VGVSDGRILKWKAANSGWT----------EFATTAPH----------RAREICD   84 (343)
Q Consensus        26 ~~~~~~~~~~~p~~l~~d~~g~~l~-~~~~~g~i~~~d~~~~~~~----------~~~~~~~~----------~~~~~~~   84 (343)
                      ++.++.|.  ....|-..+||..++ +++.-.+|-.||...-+++          .|..-..+          +.++...
T Consensus        45 iQdfe~p~--ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHa  122 (703)
T KOG2321|consen   45 IQDFEMPT--ASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHA  122 (703)
T ss_pred             HHhcCCcc--ccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehh
Confidence            45556665  356899999999666 4566677888877653321          11110100          0001100


Q ss_pred             CCCCc--ccCCCcCCeeeEEEeCCCCeEEEEeCCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCC
Q 019290           85 GSTNT--TLEPLCGRPLGIKFNPVTCDLYIADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSS  162 (343)
Q Consensus        85 ~~~~~--~~~~~~~~p~gi~~~~~~~~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~  162 (343)
                      ..+.+  .+.+.+  -..|+++.....||++..+..||++|+++|.+-.-.....    ..+|.+.+.+.+|-|-+++  
T Consensus       123 k~G~hy~~RIP~~--GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~----~~lN~v~in~~hgLla~Gt--  194 (703)
T KOG2321|consen  123 KYGRHYRTRIPKF--GRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDS----GELNVVSINEEHGLLACGT--  194 (703)
T ss_pred             hcCeeeeeecCcC--CccccccCCCccEEEeecCcceEEEEcccccccccccccc----ccceeeeecCccceEEecc--
Confidence            00000  111111  2457777656789988777789999999987543221111    2466677777533333322  


Q ss_pred             cccccccceeeeeecCCCceEEEEeCCCCceE-Eee-----------cCCCCcceeEEecCCCEEEEEEcCCCeEEEEEc
Q 019290          163 IYFQRRQYFMSIATGDRSGRLLKYDPLKKNVT-VMY-----------NGLSFPNGVALSNNNSFLLLAESATLKILRFWL  230 (343)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~-----------~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~  230 (343)
                                      ..+.|-.||+..+..- .+.           .....+..+.|..+|-.+- ..+.+|.++.||+
T Consensus       195 ----------------~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~a-VGts~G~v~iyDL  257 (703)
T KOG2321|consen  195 ----------------EDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVA-VGTSTGSVLIYDL  257 (703)
T ss_pred             ----------------cCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEE-eeccCCcEEEEEc
Confidence                            2566778887655421 111           1122356777776654333 4567899999998


Q ss_pred             cC
Q 019290          231 QG  232 (343)
Q Consensus       231 ~~  232 (343)
                      ..
T Consensus       258 Ra  259 (703)
T KOG2321|consen  258 RA  259 (703)
T ss_pred             cc
Confidence            75

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.57  E-value=0.042  Score=52.78  Aligned_cols=42  Identities=19%  Similarity=0.161  Sum_probs=26.1

Q ss_pred             CeEEEECC-CCCEEEEeeCCCCCccCCceeEEEeCCEEEEecCCC
Q 019290          292 PVGVKFDV-NGNVVDVLDGNEGNTLNSVSEVQEYGEYLYTGSSVQ  335 (343)
Q Consensus       292 ~~v~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~~  335 (343)
                      +.++++|. +|+++-.+..+.......+.  ...+|++||++...
T Consensus       416 G~l~ald~~tG~~lW~~~~~~~~~a~P~~--~~~~g~~yv~~~~g  458 (488)
T cd00216         416 GYFRAFDATTGKELWKFRTPSGIQATPMT--YEVNGKQYVGVMVG  458 (488)
T ss_pred             CeEEEEECCCCceeeEEECCCCceEcCEE--EEeCCEEEEEEEec
Confidence            58899997 68887777654332111211  13378999887654

The alignment model contains an 8-bladed beta-propeller.

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=97.56  E-value=0.03  Score=53.49  Aligned_cols=174  Identities=13%  Similarity=0.101  Sum_probs=104.6

Q ss_pred             ccccccccCCCCCCCceEEEcCCCCeeEEEe-cCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeE
Q 019290           23 SKSYQQLQLPGVVGPESLAFDCNGEGPYVGV-SDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGI  101 (343)
Q Consensus        23 ~~~~~~~~~~~~~~p~~l~~d~~g~~l~~~~-~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi  101 (343)
                      +..+-.+.+++-..-.+-++.|+|+.+.+++ ..-.||++.+.. ..++..-               ............+
T Consensus       371 ~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~~~-~vk~~~v---------------~~~~~~~~~a~~i  434 (691)
T KOG2048|consen  371 YIHLLKLFTKEKENISCAAISPDGNLIAISTVSRTKIYRLQPDP-NVKVINV---------------DDVPLALLDASAI  434 (691)
T ss_pred             hhhheeeecCCccceeeeccCCCCCEEEEeeccceEEEEeccCc-ceeEEEe---------------ccchhhhccceee
Confidence            5556667777666777888999999665544 566789888765 3333211               0001111122345


Q ss_pred             EEeCCCCeEEEEe-CCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCC
Q 019290          102 KFNPVTCDLYIAD-AYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRS  180 (343)
Q Consensus       102 ~~~~~~~~l~v~~-~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~  180 (343)
                      .+.-+++.++++. ....+..++.++...+.+........-..+..+++.+ +|.-.++-..                 .
T Consensus       435 ~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~Ss-dG~yiaa~~t-----------------~  496 (691)
T KOG2048|consen  435 SFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSS-DGNYIAAIST-----------------R  496 (691)
T ss_pred             EEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcC-CCCEEEEEec-----------------c
Confidence            5554344444443 3345788888777766664443333446788899999 4663332222                 5


Q ss_pred             ceEEEEeCCCCceEEeecCCCC-cceeEEe-cCCCEEEEEEcCCCeEEEEEcc
Q 019290          181 GRLLKYDPLKKNVTVMYNGLSF-PNGVALS-NNNSFLLLAESATLKILRFWLQ  231 (343)
Q Consensus       181 ~~v~~~d~~~~~~~~~~~~~~~-~~~i~~~-~d~~~lyv~~~~~~~i~~~~~~  231 (343)
                      +.|+.|+.++++.+.+...+.. ....++. ++...|.++. .+++++-|++.
T Consensus       497 g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~~lvvat-s~nQv~efdi~  548 (691)
T KOG2048|consen  497 GQIFVYNLETLESHLLKVRLNIDVTAAAFSPFVRNRLVVAT-SNNQVFEFDIE  548 (691)
T ss_pred             ceEEEEEcccceeecchhccCcceeeeeccccccCcEEEEe-cCCeEEEEecc
Confidence            6799999998887766544432 3344555 3445566664 57899999984

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.55  E-value=0.019  Score=55.45  Aligned_cols=227  Identities=13%  Similarity=0.100  Sum_probs=122.9

Q ss_pred             ccCCCCCCCceEEEcC--CCCeeEEEe-cCCEEEEEEcCC---CCeEEeeecCCCccccccCCCCCcccCCC----cCCe
Q 019290           29 LQLPGVVGPESLAFDC--NGEGPYVGV-SDGRILKWKAAN---SGWTEFATTAPHRAREICDGSTNTTLEPL----CGRP   98 (343)
Q Consensus        29 ~~~~~~~~p~~l~~d~--~g~~l~~~~-~~g~i~~~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~p   98 (343)
                      +.-....+|+--..|-  ||+.+|+.. .+.|+-|++.+.   .++.++++.....      |.-..+.+.+    .+.-
T Consensus       122 ~~~gD~HHp~~s~t~g~ydGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~H------g~~~~~~p~t~yv~~~~e  195 (635)
T PRK02888        122 YLNGDTHHPHMSFTDGTYDGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIH------GLRPQKIPRTGYVFCNGE  195 (635)
T ss_pred             ccCCCcCCCcccccCCccceeEEEEecCCCcceEEEECccEeeceeEeCCCccCcc------ccCccccCCccEEEeCcc
Confidence            4444666777666663  688777653 578898888755   3344433222111      1000000010    0011


Q ss_pred             eeEEEeCCCCeEEEEeCCCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCccc-----cc----c
Q 019290           99 LGIKFNPVTCDLYIADAYFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYF-----QR----R  168 (343)
Q Consensus        99 ~gi~~~~~~~~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~-----~~----~  168 (343)
                      +.+-+.+++..++......+ +..+|.++-++..-  ...+   ..+..+.+++.++.+|++......     .+    .
T Consensus       196 ~~~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~q--V~Vd---gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~  270 (635)
T PRK02888        196 FRIPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQ--VMVD---GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAER  270 (635)
T ss_pred             cccccCCCCCEeecccceeEEEEEEECccceEEEE--EEeC---CCcccceECCCCCEEEEeccCcccCcceeeeccccC
Confidence            12223442334555433445 66788886544322  2111   246677888854567776421100     00    1


Q ss_pred             cceee--e---eecC--------CCceEEEEeCCC-----CceEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEc
Q 019290          169 QYFMS--I---ATGD--------RSGRLLKYDPLK-----KNVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWL  230 (343)
Q Consensus       169 ~~~~~--~---~~~~--------~~~~v~~~d~~~-----~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~  230 (343)
                      ++...  +   .+..        ..++|..+|..+     .++..+..-...|.|++++|||+++|+++.....+.++|.
T Consensus       271 d~~vvfni~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv  350 (635)
T PRK02888        271 DWVVVFNIARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDV  350 (635)
T ss_pred             ceEEEEchHHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEC
Confidence            11000  0   0000        134588888876     3455556667789999999999999999999999999998


Q ss_pred             cCcc-----ccc-cceeeec--CCCCCCceeeCCCCCEEEEecc
Q 019290          231 QGER-----TTY-TPQLFAE--MPRFPDNIKSDSKGEFWIAMNS  266 (343)
Q Consensus       231 ~~~~-----~~~-~~~~~~~--~~~~p~~i~~d~~G~lwi~~~~  266 (343)
                      ..-.     ++. +-.+..+  +..-|-..++|.+|+.|++..-
T Consensus       351 ~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~  394 (635)
T PRK02888        351 RKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFL  394 (635)
T ss_pred             hhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEee
Confidence            6421     000 0112222  2223777889999999988765

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.54  E-value=0.02  Score=55.91  Aligned_cols=191  Identities=14%  Similarity=0.122  Sum_probs=109.5

Q ss_pred             CEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCCC------eEEEEeCCCCeE
Q 019290           56 GRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYF------GLMVVGPNGGQA  129 (343)
Q Consensus        56 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~~------gi~~~d~~~~~~  129 (343)
                      ..+++||+.+.+|..++.-.                  ....-.+++..  +|.||+....+      .+-+||+++.++
T Consensus       349 ~~ve~YD~~~~~W~~~a~M~------------------~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W  408 (571)
T KOG4441|consen  349 SSVERYDPRTNQWTPVAPMN------------------TKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKW  408 (571)
T ss_pred             ceEEEecCCCCceeccCCcc------------------CccccceeEEE--CCEEEEEeccccccccccEEEecCCCCcc
Confidence            35889999998898764211                  11123466666  68888874322      388999999998


Q ss_pred             EEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEeecCCCC--cceeE
Q 019290          130 QQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSF--PNGVA  207 (343)
Q Consensus       130 ~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~--~~~i~  207 (343)
                      +..+.....   ..-.++++-  +|.||+.......           ...-..+.+|||.+++++.+..-...  -.+++
T Consensus       409 ~~va~m~~~---r~~~gv~~~--~g~iYi~GG~~~~-----------~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a  472 (571)
T KOG4441|consen  409 TPVAPMLTR---RSGHGVAVL--GGKLYIIGGGDGS-----------SNCLNSVECYDPETNTWTLIAPMNTRRSGFGVA  472 (571)
T ss_pred             cccCCCCcc---eeeeEEEEE--CCEEEEEcCcCCC-----------ccccceEEEEcCCCCceeecCCcccccccceEE
Confidence            887655432   222344444  3899996542100           00125699999999988765433222  23444


Q ss_pred             EecCCCEEEEEEcCC-----CeEEEEEccCccccccceeeecCC--CCCCceeeCCCCCEEEEeccCCCccccccccccc
Q 019290          208 LSNNNSFLLLAESAT-----LKILRFWLQGERTTYTPQLFAEMP--RFPDNIKSDSKGEFWIAMNSARGKIESNKKTAFC  280 (343)
Q Consensus       208 ~~~d~~~lyv~~~~~-----~~i~~~~~~~~~~~~~~~~~~~~~--~~p~~i~~d~~G~lwi~~~~~~~~~~~~~~~~~~  280 (343)
                      ..  ++.||+..-..     .++.+||+..    .....+....  ...-+++.. +|.+|+.....+...         
T Consensus       473 ~~--~~~iYvvGG~~~~~~~~~VE~ydp~~----~~W~~v~~m~~~rs~~g~~~~-~~~ly~vGG~~~~~~---------  536 (571)
T KOG4441|consen  473 VL--NGKIYVVGGFDGTSALSSVERYDPET----NQWTMVAPMTSPRSAVGVVVL-GGKLYAVGGFDGNNN---------  536 (571)
T ss_pred             EE--CCEEEEECCccCCCccceEEEEcCCC----CceeEcccCccccccccEEEE-CCEEEEEecccCccc---------
Confidence            43  34688864322     3478888765    3333333221  112233433 577887755434433         


Q ss_pred             cccCCCcccCCCeEEEECCC-CCEEEEee
Q 019290          281 EETAKPWFLRDPVGVKFDVN-GNVVDVLD  308 (343)
Q Consensus       281 ~~~~~~~~~~~~~v~~~d~~-g~~~~~~~  308 (343)
                                ...|-++||. ++......
T Consensus       537 ----------l~~ve~ydp~~d~W~~~~~  555 (571)
T KOG4441|consen  537 ----------LNTVECYDPETDTWTEVTE  555 (571)
T ss_pred             ----------cceeEEcCCCCCceeeCCC
Confidence                      3588889985 44444433

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=97.54  E-value=0.0042  Score=52.30  Aligned_cols=180  Identities=9%  Similarity=0.063  Sum_probs=103.3

Q ss_pred             CceEEEcCCCCeeEEEecCCEEEEEEcCCCCe--EEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEe
Q 019290           37 PESLAFDCNGEGPYVGVSDGRILKWKAANSGW--TEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIAD  114 (343)
Q Consensus        37 p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~  114 (343)
                      ...++++.|-+.+.++...--+..||.+..+.  .+|                    ....+.+..+.+..+++.++-+.
T Consensus       103 vk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~--------------------~ghtg~Ir~v~wc~eD~~iLSSa  162 (334)
T KOG0278|consen  103 VKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEI--------------------SGHTGGIRTVLWCHEDKCILSSA  162 (334)
T ss_pred             eeeEEecccchhhhccchHHHhhhhhccCCCCCchhh--------------------cCCCCcceeEEEeccCceEEeec
Confidence            45677777766566655444344455544221  111                    11223344555555577777763


Q ss_pred             CCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceE
Q 019290          115 AYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVT  194 (343)
Q Consensus       115 ~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~  194 (343)
                      ....|+.+|..+++...-....     ..++++-+.+ ||++.....                  ...|-.+|+++-.+.
T Consensus       163 dd~tVRLWD~rTgt~v~sL~~~-----s~VtSlEvs~-dG~ilTia~------------------gssV~Fwdaksf~~l  218 (334)
T KOG0278|consen  163 DDKTVRLWDHRTGTEVQSLEFN-----SPVTSLEVSQ-DGRILTIAY------------------GSSVKFWDAKSFGLL  218 (334)
T ss_pred             cCCceEEEEeccCcEEEEEecC-----CCCcceeecc-CCCEEEEec------------------CceeEEeccccccce
Confidence            3455999999988754432322     3477888888 588765443                  235777887543321


Q ss_pred             EeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCC---CceeeCCCCCEEEEecc
Q 019290          195 VMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFP---DNIKSDSKGEFWIAMNS  266 (343)
Q Consensus       195 ~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p---~~i~~d~~G~lwi~~~~  266 (343)
                      .-..-.-..+..-++|+. ..||+.-....+++||.++...   +..+  ..+++   ..+.+.|+|.+|.....
T Consensus       219 Ks~k~P~nV~SASL~P~k-~~fVaGged~~~~kfDy~TgeE---i~~~--nkgh~gpVhcVrFSPdGE~yAsGSE  287 (334)
T KOG0278|consen  219 KSYKMPCNVESASLHPKK-EFFVAGGEDFKVYKFDYNTGEE---IGSY--NKGHFGPVHCVRFSPDGELYASGSE  287 (334)
T ss_pred             eeccCccccccccccCCC-ceEEecCcceEEEEEeccCCce---eeec--ccCCCCceEEEEECCCCceeeccCC
Confidence            111111223445567776 5788887889999999886432   2222  22222   33567888888887665

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=97.54  E-value=0.083  Score=52.34  Aligned_cols=152  Identities=16%  Similarity=0.113  Sum_probs=88.5

Q ss_pred             CceEEEcCCCCeeEEEecCCEEEEEEcCCC-CeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           37 PESLAFDCNGEGPYVGVSDGRILKWKAANS-GWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        37 p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      -..|++|++|+.+++...+|-|..++.... +-.                   +......-.+.+++..  .+.+..+..
T Consensus        16 ~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P-------------------~ti~~~g~~v~~ia~~--s~~f~~~s~   74 (933)
T KOG1274|consen   16 LTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEP-------------------ETIDISGELVSSIACY--SNHFLTGSE   74 (933)
T ss_pred             eEEEEEcCCCCEEEEecCCCceEEeecCCcccCC-------------------chhhccCceeEEEeec--ccceEEeec
Confidence            568999999998888878888888875442 100                   0000011123345555  345555544


Q ss_pred             CCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCc-eE
Q 019290          116 YFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKN-VT  194 (343)
Q Consensus       116 ~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~-~~  194 (343)
                      .+-|.+|....++...+....    ...++.++++. +|...++.+.                 .-.|-.++..+.. ..
T Consensus        75 ~~tv~~y~fps~~~~~iL~Rf----tlp~r~~~v~g-~g~~iaagsd-----------------D~~vK~~~~~D~s~~~  132 (933)
T KOG1274|consen   75 QNTVLRYKFPSGEEDTILARF----TLPIRDLAVSG-SGKMIAAGSD-----------------DTAVKLLNLDDSSQEK  132 (933)
T ss_pred             cceEEEeeCCCCCccceeeee----eccceEEEEec-CCcEEEeecC-----------------ceeEEEEeccccchhe
Confidence            455888877666544322111    12367889998 5776665443                 2224444443222 22


Q ss_pred             EeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290          195 VMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQG  232 (343)
Q Consensus       195 ~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~  232 (343)
                      .+...-...-.+.++|+++.|-++ +.+|.|.+|+++.
T Consensus       133 ~lrgh~apVl~l~~~p~~~fLAvs-s~dG~v~iw~~~~  169 (933)
T KOG1274|consen  133 VLRGHDAPVLQLSYDPKGNFLAVS-SCDGKVQIWDLQD  169 (933)
T ss_pred             eecccCCceeeeeEcCCCCEEEEE-ecCceEEEEEccc
Confidence            333222345678899999876655 4689999999875

>PTZ00421 coronin; Provisional

Probab=97.53  E-value=0.093  Score=50.31  Aligned_cols=159  Identities=11%  Similarity=0.049  Sum_probs=91.2

Q ss_pred             CceEEEcCCC-CeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           37 PESLAFDCNG-EGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        37 p~~l~~d~~g-~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      ..++++.+++ +++.++..++.|..||..+++.....                   ........++++++ ++.++++..
T Consensus       128 V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l-------------------~~h~~~V~sla~sp-dG~lLatgs  187 (493)
T PTZ00421        128 VGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVI-------------------KCHSDQITSLEWNL-DGSLLCTTS  187 (493)
T ss_pred             EEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEE-------------------cCCCCceEEEEEEC-CCCEEEEec
Confidence            5678899875 56778888999999998875432211                   01122467899998 666555444


Q ss_pred             CCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCc--
Q 019290          116 YFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKN--  192 (343)
Q Consensus       116 ~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~--  192 (343)
                      .++ |..+|+++++...-.....+   .....+...+. +...++....             ....+.|..||.....  
T Consensus       188 ~Dg~IrIwD~rsg~~v~tl~~H~~---~~~~~~~w~~~-~~~ivt~G~s-------------~s~Dr~VklWDlr~~~~p  250 (493)
T PTZ00421        188 KDKKLNIIDPRDGTIVSSVEAHAS---AKSQRCLWAKR-KDLIITLGCS-------------KSQQRQIMLWDTRKMASP  250 (493)
T ss_pred             CCCEEEEEECCCCcEEEEEecCCC---CcceEEEEcCC-CCeEEEEecC-------------CCCCCeEEEEeCCCCCCc
Confidence            555 88999988764322111111   11233445553 4444433210             0113457777865322  


Q ss_pred             eEEeecCC-CCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290          193 VTVMYNGL-SFPNGVALSNNNSFLLLAESATLKILRFWLQG  232 (343)
Q Consensus       193 ~~~~~~~~-~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~  232 (343)
                      ......+. .......+++++..+|++...++.|..|++..
T Consensus       251 ~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~  291 (493)
T PTZ00421        251 YSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMN  291 (493)
T ss_pred             eeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeC
Confidence            11111111 12233457788988888776688999999875

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=97.50  E-value=0.034  Score=46.31  Aligned_cols=113  Identities=16%  Similarity=0.177  Sum_probs=69.6

Q ss_pred             CeeeEEEeCCCCeEEEEeC--CCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeee
Q 019290           97 RPLGIKFNPVTCDLYIADA--YFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSI  174 (343)
Q Consensus        97 ~p~gi~~~~~~~~l~v~~~--~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~  174 (343)
                      .+..++..|.+..+.+...  ...+..+|.+...+..+.       ....|.+...| +|++.+....            
T Consensus        61 ~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~~-------~~~~n~i~wsP-~G~~l~~~g~------------  120 (194)
T PF08662_consen   61 PIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSFG-------TQPRNTISWSP-DGRFLVLAGF------------  120 (194)
T ss_pred             ceEEEEECcCCCEEEEEEccCCcccEEEcCcccEeEeec-------CCCceEEEECC-CCCEEEEEEc------------
Confidence            3678999985556655532  234888888744443331       13467899999 4876664321            


Q ss_pred             eecCCCceEEEEeCCCCceEEeecCCCCcceeEEecCCCEEEEEEcC-----CCeEEEEEccC
Q 019290          175 ATGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESA-----TLKILRFWLQG  232 (343)
Q Consensus       175 ~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~-----~~~i~~~~~~~  232 (343)
                        ++..|.|..+|.+..+..... .......++++|||+++..+.+.     ++++..|+..|
T Consensus       121 --~n~~G~l~~wd~~~~~~i~~~-~~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G  180 (194)
T PF08662_consen  121 --GNLNGDLEFWDVRKKKKISTF-EHSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQG  180 (194)
T ss_pred             --cCCCcEEEEEECCCCEEeecc-ccCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecC
Confidence              122466888998744432211 22346788999999987766543     45666666665

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=97.46  E-value=0.021  Score=52.13  Aligned_cols=196  Identities=15%  Similarity=0.135  Sum_probs=104.9

Q ss_pred             CCeeeEEEeCCCCeEEEEeCCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCe-EEEEeCCcccccccceeee
Q 019290           96 GRPLGIKFNPVTCDLYIADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGI-VYFTDSSIYFQRRQYFMSI  174 (343)
Q Consensus        96 ~~p~gi~~~~~~~~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~-l~v~~~~~~~~~~~~~~~~  174 (343)
                      +.+..+.|++...-|.++.....+..|..+ |++.+..+...-.. .-+....+.++ |. ..++...            
T Consensus       214 ~~I~sv~FHp~~plllvaG~d~~lrifqvD-Gk~N~~lqS~~l~~-fPi~~a~f~p~-G~~~i~~s~r------------  278 (514)
T KOG2055|consen  214 GGITSVQFHPTAPLLLVAGLDGTLRIFQVD-GKVNPKLQSIHLEK-FPIQKAEFAPN-GHSVIFTSGR------------  278 (514)
T ss_pred             CCceEEEecCCCceEEEecCCCcEEEEEec-CccChhheeeeecc-CccceeeecCC-CceEEEeccc------------
Confidence            356789999844456666433334444333 33333322211101 12345566674 65 4443322            


Q ss_pred             eecCCCceEEEEeCCCCceEEeecCC----CCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCC
Q 019290          175 ATGDRSGRLLKYDPLKKNVTVMYNGL----SFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPD  250 (343)
Q Consensus       175 ~~~~~~~~v~~~d~~~~~~~~~~~~~----~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~  250 (343)
                           ..-+|.||..+.++..+....    .......+++++.++.+.. ..+-|+.+...+...++.+    +.+|...
T Consensus       279 -----rky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G-~~G~I~lLhakT~eli~s~----KieG~v~  348 (514)
T KOG2055|consen  279 -----RKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAG-NNGHIHLLHAKTKELITSF----KIEGVVS  348 (514)
T ss_pred             -----ceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcc-cCceEEeehhhhhhhhhee----eeccEEe
Confidence                 345888999887776543211    1234567888998766554 4677877765442221222    2455566


Q ss_pred             ceeeCCCCCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECCCC-CEEEEeeCCCCCccCCceeEEEeCCEEE
Q 019290          251 NIKSDSKGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNG-NVVDVLDGNEGNTLNSVSEVQEYGEYLY  329 (343)
Q Consensus       251 ~i~~d~~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g-~~~~~~~~~~~~~~~~~~~~~~~~g~l~  329 (343)
                      ++++++||+..+++..                        ++.|+.+|-+. ..+..+.+ +| ....-+.+..-++.++
T Consensus       349 ~~~fsSdsk~l~~~~~------------------------~GeV~v~nl~~~~~~~rf~D-~G-~v~gts~~~S~ng~yl  402 (514)
T KOG2055|consen  349 DFTFSSDSKELLASGG------------------------TGEVYVWNLRQNSCLHRFVD-DG-SVHGTSLCISLNGSYL  402 (514)
T ss_pred             eEEEecCCcEEEEEcC------------------------CceEEEEecCCcceEEEEee-cC-ccceeeeeecCCCceE
Confidence            7888899854444444                        35788888654 34444543 33 2333344433466655


Q ss_pred             EecCCCCeEEEEc
Q 019290          330 TGSSVQPYVVVIK  342 (343)
Q Consensus       330 i~~~~~~~i~~~~  342 (343)
                      -++..+.-|=.|+
T Consensus       403 A~GS~~GiVNIYd  415 (514)
T KOG2055|consen  403 ATGSDSGIVNIYD  415 (514)
T ss_pred             EeccCcceEEEec
Confidence            5555555555554

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=97.45  E-value=0.12  Score=49.56  Aligned_cols=194  Identities=15%  Similarity=0.043  Sum_probs=110.5

Q ss_pred             ccccCCCCCCCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCC
Q 019290           27 QQLQLPGVVGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPV  106 (343)
Q Consensus        27 ~~~~~~~~~~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~  106 (343)
                      ..++.|...+-|+||+.+.|+ ||....+|.|..||+.+.+...-                   .....+....|+++++
T Consensus        62 ~vi~g~~drsIE~L~W~e~~R-LFS~g~sg~i~EwDl~~lk~~~~-------------------~d~~gg~IWsiai~p~  121 (691)
T KOG2048|consen   62 PVIHGPEDRSIESLAWAEGGR-LFSSGLSGSITEWDLHTLKQKYN-------------------IDSNGGAIWSIAINPE  121 (691)
T ss_pred             EEEecCCCCceeeEEEccCCe-EEeecCCceEEEEecccCceeEE-------------------ecCCCcceeEEEeCCc
Confidence            334455556789999997777 99888999999999987543321                   1233445688999996


Q ss_pred             CCeEEEEeCCCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEE
Q 019290          107 TCDLYIADAYFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLK  185 (343)
Q Consensus       107 ~~~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~  185 (343)
                      +..+-|+ ..+| ++.++...++++.-....  .....+-++..++ ++.-.++...                 .+.|-.
T Consensus       122 ~~~l~Ig-cddGvl~~~s~~p~~I~~~r~l~--rq~sRvLslsw~~-~~~~i~~Gs~-----------------Dg~Iri  180 (691)
T KOG2048|consen  122 NTILAIG-CDDGVLYDFSIGPDKITYKRSLM--RQKSRVLSLSWNP-TGTKIAGGSI-----------------DGVIRI  180 (691)
T ss_pred             cceEEee-cCCceEEEEecCCceEEEEeecc--cccceEEEEEecC-CccEEEeccc-----------------CceEEE
Confidence            6778888 4566 555566656555332111  1124577888888 4763443222                 345666


Q ss_pred             EeCCCCceEEe----ecCCCC-----cceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCC
Q 019290          186 YDPLKKNVTVM----YNGLSF-----PNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDS  256 (343)
Q Consensus       186 ~d~~~~~~~~~----~~~~~~-----~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~  256 (343)
                      +|...+..-.+    ...+..     ..++.+-.++  ..++....|.|-.||......+...+   -.......++++.
T Consensus       181 wd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~--tI~sgDS~G~V~FWd~~~gTLiqS~~---~h~adVl~Lav~~  255 (691)
T KOG2048|consen  181 WDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS--TIASGDSAGTVTFWDSIFGTLIQSHS---CHDADVLALAVAD  255 (691)
T ss_pred             EEcCCCceEEEeeecccccccCCceEEEEEEEeecC--cEEEecCCceEEEEcccCcchhhhhh---hhhcceeEEEEcC
Confidence            77665443221    112222     2344444555  34555567899999865321111111   1222244566766


Q ss_pred             CC-CEEEEecc
Q 019290          257 KG-EFWIAMNS  266 (343)
Q Consensus       257 ~G-~lwi~~~~  266 (343)
                      ++ +++++.-.
T Consensus       256 ~~d~vfsaGvd  266 (691)
T KOG2048|consen  256 NEDRVFSAGVD  266 (691)
T ss_pred             CCCeEEEccCC
Confidence            64 55555443

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=97.42  E-value=0.02  Score=53.10  Aligned_cols=205  Identities=15%  Similarity=0.126  Sum_probs=113.9

Q ss_pred             cccCC-CCCCCceEEEcCCCCeeEEEecCCEEEEEEcCCCC--eEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEe
Q 019290           28 QLQLP-GVVGPESLAFDCNGEGPYVGVSDGRILKWKAANSG--WTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFN  104 (343)
Q Consensus        28 ~~~~~-~~~~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~  104 (343)
                      ++.++ +-.....+++|+.|-+++++.-+..+..||.++-.  +..|.      ...          +...-..+.+.+.
T Consensus       160 Ei~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr------~l~----------P~E~h~i~sl~ys  223 (641)
T KOG0772|consen  160 EIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFR------QLQ----------PCETHQINSLQYS  223 (641)
T ss_pred             eEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhh------ccC----------cccccccceeeec
Confidence            34444 32347789999999999999999999999987622  22221      001          1223345678888


Q ss_pred             CCCCeEEEEeCCCeEEEEeCCCCeEEEccccc-------CC-CCccCcceeEEeCCCCeEEEEeCCcccccccceeeeee
Q 019290          105 PVTCDLYIADAYFGLMVVGPNGGQAQQLASSA-------GG-IPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIAT  176 (343)
Q Consensus       105 ~~~~~l~v~~~~~gi~~~d~~~~~~~~~~~~~-------~~-~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~  176 (343)
                      +-++.|++.....-...+|.++-++..+....       .. .....++...+.|.....+++...              
T Consensus       224 ~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~--------------  289 (641)
T KOG0772|consen  224 VTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSY--------------  289 (641)
T ss_pred             CCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecC--------------
Confidence            85667777754444777888765554443211       10 112234445555532345554432              


Q ss_pred             cCCCceEEEEeCCCCceEEeec----CCC-CcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeec---CCC-
Q 019290          177 GDRSGRLLKYDPLKKNVTVMYN----GLS-FPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAE---MPR-  247 (343)
Q Consensus       177 ~~~~~~v~~~d~~~~~~~~~~~----~~~-~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~-  247 (343)
                       .+.-+||-++....+..++..    +.. .+..-++++|+. ++.+...+|.|-.|+..+ .. .+......   .++ 
T Consensus       290 -DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~-~iAagc~DGSIQ~W~~~~-~~-v~p~~~vk~AH~~g~  365 (641)
T KOG0772|consen  290 -DGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGK-LIAAGCLDGSIQIWDKGS-RT-VRPVMKVKDAHLPGQ  365 (641)
T ss_pred             -CCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcc-hhhhcccCCceeeeecCC-cc-cccceEeeeccCCCC
Confidence             113345544432223333322    111 244556888887 577778899999999733 22 22222221   221 


Q ss_pred             CCCceeeCCCCCEEEEecc
Q 019290          248 FPDNIKSDSKGEFWIAMNS  266 (343)
Q Consensus       248 ~p~~i~~d~~G~lwi~~~~  266 (343)
                      ....+.++.+|+++.+-..
T Consensus       366 ~Itsi~FS~dg~~LlSRg~  384 (641)
T KOG0772|consen  366 DITSISFSYDGNYLLSRGF  384 (641)
T ss_pred             ceeEEEeccccchhhhccC
Confidence            2455788999988877544

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=97.41  E-value=0.097  Score=47.64  Aligned_cols=144  Identities=13%  Similarity=0.140  Sum_probs=82.6

Q ss_pred             eeeEEEeCCCCeEEEEeCCCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeee
Q 019290           98 PLGIKFNPVTCDLYIADAYFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIAT  176 (343)
Q Consensus        98 p~gi~~~~~~~~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~  176 (343)
                      +.++..++ .|..+++....+ ....|.++|..-..... + ........++++| ||.|+.+-..              
T Consensus       306 V~~ls~h~-tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~-~-~s~v~~ts~~fHp-DgLifgtgt~--------------  367 (506)
T KOG0289|consen  306 VTGLSLHP-TGEYLLSASNDGTWAFSDISSGSQLTVVSD-E-TSDVEYTSAAFHP-DGLIFGTGTP--------------  367 (506)
T ss_pred             ceeeeecc-CCcEEEEecCCceEEEEEccCCcEEEEEee-c-cccceeEEeeEcC-CceEEeccCC--------------
Confidence            56788888 555444434556 44456666643322111 1 1123467889999 6888774432              


Q ss_pred             cCCCceEEEEeCCCCc-eEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCC-CCCceee
Q 019290          177 GDRSGRLLKYDPLKKN-VTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPR-FPDNIKS  254 (343)
Q Consensus       177 ~~~~~~v~~~d~~~~~-~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~p~~i~~  254 (343)
                         .+.|-.||...+. ...+...-.....|.|+.+|- ..++...++.|..||+...   .+++.+..... ....+.+
T Consensus       368 ---d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY-~Lat~add~~V~lwDLRKl---~n~kt~~l~~~~~v~s~~f  440 (506)
T KOG0289|consen  368 ---DGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGY-WLATAADDGSVKLWDLRKL---KNFKTIQLDEKKEVNSLSF  440 (506)
T ss_pred             ---CceEEEEEcCCccccccCCCCCCceeEEEeccCce-EEEEEecCCeEEEEEehhh---cccceeeccccccceeEEE
Confidence               4556667765443 222222233457788987774 4445566777999998542   34444432111 2455789


Q ss_pred             CCCCCEEEEecc
Q 019290          255 DSKGEFWIAMNS  266 (343)
Q Consensus       255 d~~G~lwi~~~~  266 (343)
                      |..|.+.+....
T Consensus       441 D~SGt~L~~~g~  452 (506)
T KOG0289|consen  441 DQSGTYLGIAGS  452 (506)
T ss_pred             cCCCCeEEeecc
Confidence            999977766533

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=97.38  E-value=0.095  Score=47.70  Aligned_cols=102  Identities=11%  Similarity=0.063  Sum_probs=56.5

Q ss_pred             CcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEeecCC---CCcceeEEecCCCEEEEEE
Q 019290          143 FTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGL---SFPNGVALSNNNSFLLLAE  219 (343)
Q Consensus       143 ~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~---~~~~~i~~~~d~~~lyv~~  219 (343)
                      .++++...+. |..+++.+.                 .+.....|..++..-....+-   ......+|+|||- ++.+.
T Consensus       305 ~V~~ls~h~t-geYllsAs~-----------------d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgL-ifgtg  365 (506)
T KOG0289|consen  305 PVTGLSLHPT-GEYLLSASN-----------------DGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGL-IFGTG  365 (506)
T ss_pred             cceeeeeccC-CcEEEEecC-----------------CceEEEEEccCCcEEEEEeeccccceeEEeeEcCCce-EEecc
Confidence            3677788884 665554433                 222333344444433222221   2246788999984 77788


Q ss_pred             cCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEecc
Q 019290          220 SATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNS  266 (343)
Q Consensus       220 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~~  266 (343)
                      +.++.|-.|++..+..   ...|..-.+-...+.+..+|...++..+
T Consensus       366 t~d~~vkiwdlks~~~---~a~Fpght~~vk~i~FsENGY~Lat~ad  409 (506)
T KOG0289|consen  366 TPDGVVKIWDLKSQTN---VAKFPGHTGPVKAISFSENGYWLATAAD  409 (506)
T ss_pred             CCCceEEEEEcCCccc---cccCCCCCCceeEEEeccCceEEEEEec
Confidence            8889999999875322   1222222222445778888844444333

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=97.34  E-value=0.035  Score=50.12  Aligned_cols=186  Identities=15%  Similarity=0.075  Sum_probs=106.8

Q ss_pred             CCceEEEcCCCCeeEEEecCC--EEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEE
Q 019290           36 GPESLAFDCNGEGPYVGVSDG--RILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIA  113 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~  113 (343)
                      ...-+.++++|+.+-+++.+-  .|+...+++. ++..                 ++.......+..|.++|+++.|.-+
T Consensus       226 EVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~-~kl~-----------------~tlvgh~~~V~yi~wSPDdryLlaC  287 (519)
T KOG0293|consen  226 EVWFLQFSHNGKYLASASKDSTAIIWIVVYDVH-FKLK-----------------KTLVGHSQPVSYIMWSPDDRYLLAC  287 (519)
T ss_pred             cEEEEEEcCCCeeEeeccCCceEEEEEEecCcc-eeee-----------------eeeecccCceEEEEECCCCCeEEec
Confidence            466788888888444444332  4555555543 3322                 1112222334568889844444433


Q ss_pred             eCCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCce
Q 019290          114 DAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNV  193 (343)
Q Consensus       114 ~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~  193 (343)
                      ....-+..+|.++|..........   ...+.+.+.-| ||.-+++.+.                 ...++.+|.++...
T Consensus       288 g~~e~~~lwDv~tgd~~~~y~~~~---~~S~~sc~W~p-Dg~~~V~Gs~-----------------dr~i~~wdlDgn~~  346 (519)
T KOG0293|consen  288 GFDEVLSLWDVDTGDLRHLYPSGL---GFSVSSCAWCP-DGFRFVTGSP-----------------DRTIIMWDLDGNIL  346 (519)
T ss_pred             CchHheeeccCCcchhhhhcccCc---CCCcceeEEcc-CCceeEecCC-----------------CCcEEEecCCcchh
Confidence            222338888998887554432221   24566778888 5777775443                 56788888874332


Q ss_pred             EEeecCC--CCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEecc
Q 019290          194 TVMYNGL--SFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNS  266 (343)
Q Consensus       194 ~~~~~~~--~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~~  266 (343)
                      . -..+.  .....+++++||+.++... ....|..|+....   .....+ ........+.++.+|++.+....
T Consensus       347 ~-~W~gvr~~~v~dlait~Dgk~vl~v~-~d~~i~l~~~e~~---~dr~li-se~~~its~~iS~d~k~~LvnL~  415 (519)
T KOG0293|consen  347 G-NWEGVRDPKVHDLAITYDGKYVLLVT-VDKKIRLYNREAR---VDRGLI-SEEQPITSFSISKDGKLALVNLQ  415 (519)
T ss_pred             h-cccccccceeEEEEEcCCCcEEEEEe-cccceeeechhhh---hhhccc-cccCceeEEEEcCCCcEEEEEcc
Confidence            2 12222  3357889999999888775 4677888875431   111122 12222445778889988887665

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=97.33  E-value=0.032  Score=47.19  Aligned_cols=149  Identities=7%  Similarity=0.013  Sum_probs=94.7

Q ss_pred             ceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCCC
Q 019290           38 ESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYF  117 (343)
Q Consensus        38 ~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~~  117 (343)
                      ..+.+-...+.+..++.++.|..||-.++...+-.                    .....+.++-++. +|++.....+.
T Consensus       147 r~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL--------------------~~~s~VtSlEvs~-dG~ilTia~gs  205 (334)
T KOG0278|consen  147 RTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSL--------------------EFNSPVTSLEVSQ-DGRILTIAYGS  205 (334)
T ss_pred             eeEEEeccCceEEeeccCCceEEEEeccCcEEEEE--------------------ecCCCCcceeecc-CCCEEEEecCc
Confidence            34445444444666678888999998776433211                    1112345677776 67766665677


Q ss_pred             eEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEe-
Q 019290          118 GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVM-  196 (343)
Q Consensus       118 gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~-  196 (343)
                      +|-.+|.++=..-.-...    | -.+.+....|+ ..+||+...                 ...+++||-.+++-... 
T Consensus       206 sV~Fwdaksf~~lKs~k~----P-~nV~SASL~P~-k~~fVaGge-----------------d~~~~kfDy~TgeEi~~~  262 (334)
T KOG0278|consen  206 SVKFWDAKSFGLLKSYKM----P-CNVESASLHPK-KEFFVAGGE-----------------DFKVYKFDYNTGEEIGSY  262 (334)
T ss_pred             eeEEeccccccceeeccC----c-cccccccccCC-CceEEecCc-----------------ceEEEEEeccCCceeeec
Confidence            788888875222111111    1 23566677884 688884432                 45799999888765433 


Q ss_pred             -ecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEcc
Q 019290          197 -YNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQ  231 (343)
Q Consensus       197 -~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~  231 (343)
                       .......-.+.|+|||+ +|.+.+.++.|..|...
T Consensus       263 nkgh~gpVhcVrFSPdGE-~yAsGSEDGTirlWQt~  297 (334)
T KOG0278|consen  263 NKGHFGPVHCVRFSPDGE-LYASGSEDGTIRLWQTT  297 (334)
T ss_pred             ccCCCCceEEEEECCCCc-eeeccCCCceEEEEEec
Confidence             23344567888999997 89999999999888754

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=97.32  E-value=0.076  Score=44.62  Aligned_cols=178  Identities=11%  Similarity=0.101  Sum_probs=102.3

Q ss_pred             CceEEEcCCCCeeEEEecCCEEEEEEcCCCC-eEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           37 PESLAFDCNGEGPYVGVSDGRILKWKAANSG-WTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        37 p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      ...+-+..+|+...+...+..+-.|+|-.+. ++.+.                    .........+... ++.=+.+..
T Consensus        20 V~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYs--------------------ghG~EVlD~~~s~-Dnskf~s~G   78 (307)
T KOG0316|consen   20 VRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYS--------------------GHGHEVLDAALSS-DNSKFASCG   78 (307)
T ss_pred             eEEEEEccCCCEEEEcCCCceEEeecccccceeeeec--------------------CCCceeeeccccc-cccccccCC
Confidence            4556677899933345566677788886543 33332                    1122334444444 444444322


Q ss_pred             CC-eEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceE
Q 019290          116 YF-GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVT  194 (343)
Q Consensus       116 ~~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~  194 (343)
                      ++ -++.+|.++|++-+-.....    ..+|.+.+.. +..+.++.+-                 ...+-.||=.+...+
T Consensus        79 gDk~v~vwDV~TGkv~Rr~rgH~----aqVNtV~fNe-esSVv~Sgsf-----------------D~s~r~wDCRS~s~e  136 (307)
T KOG0316|consen   79 GDKAVQVWDVNTGKVDRRFRGHL----AQVNTVRFNE-ESSVVASGSF-----------------DSSVRLWDCRSRSFE  136 (307)
T ss_pred             CCceEEEEEcccCeeeeeccccc----ceeeEEEecC-cceEEEeccc-----------------cceeEEEEcccCCCC
Confidence            33 39999999999766544332    3578888887 4777775432                 234555665444443


Q ss_pred             Ee--e-cCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCC-CceeeCCCCCEEEEecc
Q 019290          195 VM--Y-NGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFP-DNIKSDSKGEFWIAMNS  266 (343)
Q Consensus       195 ~~--~-~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p-~~i~~d~~G~lwi~~~~  266 (343)
                      .+  . ........+.+.   ++.+++.+.++++.+|++.-    ++  .....-+.| ..+.+.++|+.-++..-
T Consensus       137 PiQildea~D~V~Si~v~---~heIvaGS~DGtvRtydiR~----G~--l~sDy~g~pit~vs~s~d~nc~La~~l  203 (307)
T KOG0316|consen  137 PIQILDEAKDGVSSIDVA---EHEIVAGSVDGTVRTYDIRK----GT--LSSDYFGHPITSVSFSKDGNCSLASSL  203 (307)
T ss_pred             ccchhhhhcCceeEEEec---ccEEEeeccCCcEEEEEeec----ce--eehhhcCCcceeEEecCCCCEEEEeec
Confidence            32  1 222334455553   35678888999999999763    11  111212223 45778899987666543

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=97.32  E-value=0.11  Score=46.34  Aligned_cols=200  Identities=17%  Similarity=0.229  Sum_probs=93.3

Q ss_pred             CccccccccCCCCCCCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeE
Q 019290           22 SSKSYQQLQLPGVVGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGI  101 (343)
Q Consensus        22 ~~~~~~~~~~~~~~~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi  101 (343)
                      +....+++.+|.-....+|.+..+.+ -|+--..+.|++-..-+..|.........               .....-..+
T Consensus         4 ~~~~W~~v~l~t~~~l~dV~F~d~~~-G~~VG~~g~il~T~DGG~tW~~~~~~~~~---------------~~~~~l~~I   67 (302)
T PF14870_consen    4 SGNSWQQVSLPTDKPLLDVAFVDPNH-GWAVGAYGTILKTTDGGKTWQPVSLDLDN---------------PFDYHLNSI   67 (302)
T ss_dssp             SS--EEEEE-S-SS-EEEEEESSSS--EEEEETTTEEEEESSTTSS-EE-----S--------------------EEEEE
T ss_pred             cCCCcEEeecCCCCceEEEEEecCCE-EEEEecCCEEEEECCCCccccccccCCCc---------------cceeeEEEE
Confidence            34557788888555788999996666 55444567788876666677765321100               001122456


Q ss_pred             EEeCCCCeEEEEeCCCeEEEEeCCCC-eEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCC
Q 019290          102 KFNPVTCDLYIADAYFGLMVVGPNGG-QAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRS  180 (343)
Q Consensus       102 ~~~~~~~~l~v~~~~~gi~~~d~~~~-~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~  180 (343)
                      .+..  +..|++. ..|+.....+.| .++.+.. ....+ ..+..+.... ++..+++..                  .
T Consensus        68 ~f~~--~~g~ivG-~~g~ll~T~DgG~tW~~v~l-~~~lp-gs~~~i~~l~-~~~~~l~~~------------------~  123 (302)
T PF14870_consen   68 SFDG--NEGWIVG-EPGLLLHTTDGGKTWERVPL-SSKLP-GSPFGITALG-DGSAELAGD------------------R  123 (302)
T ss_dssp             EEET--TEEEEEE-ETTEEEEESSTTSS-EE-----TT-S-S-EEEEEEEE-TTEEEEEET------------------T
T ss_pred             EecC--CceEEEc-CCceEEEecCCCCCcEEeec-CCCCC-CCeeEEEEcC-CCcEEEEcC------------------C
Confidence            6664  5677774 456555555544 4555421 11111 1234444444 266666432                  3


Q ss_pred             ceEEEEeCCCCceEEeecCC-CCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeec-CCCCCCceeeCCCC
Q 019290          181 GRLLKYDPLKKNVTVMYNGL-SFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAE-MPRFPDNIKSDSKG  258 (343)
Q Consensus       181 ~~v~~~d~~~~~~~~~~~~~-~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~G  258 (343)
                      +.||+-.-.+...+.+.... ...+.+...+||+++.++  ..+.++.-.-.+.   ........ .......|.++++|
T Consensus       124 G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs--~~G~~~~s~~~G~---~~w~~~~r~~~~riq~~gf~~~~  198 (302)
T PF14870_consen  124 GAIYRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVS--SRGNFYSSWDPGQ---TTWQPHNRNSSRRIQSMGFSPDG  198 (302)
T ss_dssp             --EEEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEE--TTSSEEEEE-TT----SS-EEEE--SSS-EEEEEE-TTS
T ss_pred             CcEEEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEE--CcccEEEEecCCC---ccceEEccCccceehhceecCCC
Confidence            56887754444555544332 334566667888754443  4566665332231   12222222 23345678889999


Q ss_pred             CEEEEecc
Q 019290          259 EFWIAMNS  266 (343)
Q Consensus       259 ~lwi~~~~  266 (343)
                      +||+.+..
T Consensus       199 ~lw~~~~G  206 (302)
T PF14870_consen  199 NLWMLARG  206 (302)
T ss_dssp             -EEEEETT
T ss_pred             CEEEEeCC
Confidence            99999865

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=97.30  E-value=0.032  Score=50.41  Aligned_cols=227  Identities=15%  Similarity=0.135  Sum_probs=129.0

Q ss_pred             CceEEEcCC--CCeeEEEecCCEEEEEEcCCC-CeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEE
Q 019290           37 PESLAFDCN--GEGPYVGVSDGRILKWKAANS-GWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIA  113 (343)
Q Consensus        37 p~~l~~d~~--g~~l~~~~~~g~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~  113 (343)
                      .-++.+.|.  +.-+-++..+|.+..|+.++. .+..+                    +....++.-++|+| .|..+.+
T Consensus       220 v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l--------------------~gH~~RVs~VafHP-sG~~L~T  278 (459)
T KOG0272|consen  220 VGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDL--------------------EGHLARVSRVAFHP-SGKFLGT  278 (459)
T ss_pred             eeeEEEccCCCccceeeeccCCceeeeccCCCcchhhh--------------------hcchhhheeeeecC-CCceeee
Confidence            556777765  434667777887777776552 22222                    12234556788999 5655544


Q ss_pred             eCCCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCc
Q 019290          114 DAYFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKN  192 (343)
Q Consensus       114 ~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~  192 (343)
                      ...+. =..+|.+++.- .+.+....   ..+.++++.+ ||.+..+....               ..++||  |..+|+
T Consensus       279 asfD~tWRlWD~~tk~E-lL~QEGHs---~~v~~iaf~~-DGSL~~tGGlD---------------~~~RvW--DlRtgr  336 (459)
T KOG0272|consen  279 ASFDSTWRLWDLETKSE-LLLQEGHS---KGVFSIAFQP-DGSLAATGGLD---------------SLGRVW--DLRTGR  336 (459)
T ss_pred             cccccchhhcccccchh-hHhhcccc---cccceeEecC-CCceeeccCcc---------------chhhee--ecccCc
Confidence            34443 44567776532 22222222   4588999999 69988754321               134454  666676


Q ss_pred             eEEee-cCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCC-CCCEEEEeccCCCc
Q 019290          193 VTVMY-NGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDS-KGEFWIAMNSARGK  270 (343)
Q Consensus       193 ~~~~~-~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~-~G~lwi~~~~~~~~  270 (343)
                      ...+. .......+++|+|+|- ...+.+.++...+||+....   +.-+++.-.++...++.++ .|++.+++..    
T Consensus       337 ~im~L~gH~k~I~~V~fsPNGy-~lATgs~Dnt~kVWDLR~r~---~ly~ipAH~nlVS~Vk~~p~~g~fL~Tasy----  408 (459)
T KOG0272|consen  337 CIMFLAGHIKEILSVAFSPNGY-HLATGSSDNTCKVWDLRMRS---ELYTIPAHSNLVSQVKYSPQEGYFLVTASY----  408 (459)
T ss_pred             EEEEecccccceeeEeECCCce-EEeecCCCCcEEEeeecccc---cceecccccchhhheEecccCCeEEEEccc----
Confidence            65544 3445678999999885 56677788899999986421   1111111222455677887 5666666554    


Q ss_pred             cccccccccccccCCCcccCCCeEEEECC-CCCEEEEeeCCCCCccCCceeEEE-eCCEEEEecCCCCeE
Q 019290          271 IESNKKTAFCEETAKPWFLRDPVGVKFDV-NGNVVDVLDGNEGNTLNSVSEVQE-YGEYLYTGSSVQPYV  338 (343)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~-~~g~l~i~~~~~~~i  338 (343)
                                          .+.+-..+. ++..+..+...++    .+.++.. .++...+++..-+++
T Consensus       409 --------------------D~t~kiWs~~~~~~~ksLaGHe~----kV~s~Dis~d~~~i~t~s~DRT~  454 (459)
T KOG0272|consen  409 --------------------DNTVKIWSTRTWSPLKSLAGHEG----KVISLDISPDSQAIATSSFDRTI  454 (459)
T ss_pred             --------------------CcceeeecCCCcccchhhcCCcc----ceEEEEeccCCceEEEeccCcee
Confidence                                224444444 4566666654444    2333332 355555555555544

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=97.30  E-value=0.078  Score=48.78  Aligned_cols=155  Identities=15%  Similarity=0.087  Sum_probs=93.5

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      ...++.+-.||.++-++...|-+-.||.++....                   ..........+-+.|.++++.+++...
T Consensus        70 ~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iL-------------------R~~~ah~apv~~~~f~~~d~t~l~s~s  130 (487)
T KOG0310|consen   70 VVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVIL-------------------RQLYAHQAPVHVTKFSPQDNTMLVSGS  130 (487)
T ss_pred             ceeEEEeecCCeEEEccCCcCcEEEeccccHHHH-------------------HHHhhccCceeEEEecccCCeEEEecC
Confidence            3678888999996667778888888884441110                   011122334567888887888887755


Q ss_pred             CCeEE-EEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCC-ce
Q 019290          116 YFGLM-VVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKK-NV  193 (343)
Q Consensus       116 ~~gi~-~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~-~~  193 (343)
                      ..++. .+|..+..++.-....    ...+...++.|..+.+.++...                 .+.|-.||..+. ..
T Consensus       131 Dd~v~k~~d~s~a~v~~~l~~h----tDYVR~g~~~~~~~hivvtGsY-----------------Dg~vrl~DtR~~~~~  189 (487)
T KOG0310|consen  131 DDKVVKYWDLSTAYVQAELSGH----TDYVRCGDISPANDHIVVTGSY-----------------DGKVRLWDTRSLTSR  189 (487)
T ss_pred             CCceEEEEEcCCcEEEEEecCC----cceeEeeccccCCCeEEEecCC-----------------CceEEEEEeccCCce
Confidence            55644 5567766553221222    1346666766644667776544                 456666776544 22


Q ss_pred             EEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290          194 TVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQG  232 (343)
Q Consensus       194 ~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~  232 (343)
                      ..-.+.......+.+-|.|. ++++ ..++.+.+||+.+
T Consensus       190 v~elnhg~pVe~vl~lpsgs-~ias-AgGn~vkVWDl~~  226 (487)
T KOG0310|consen  190 VVELNHGCPVESVLALPSGS-LIAS-AGGNSVKVWDLTT  226 (487)
T ss_pred             eEEecCCCceeeEEEcCCCC-EEEE-cCCCeEEEEEecC
Confidence            22234444556666767765 4444 4678999999874

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=97.30  E-value=0.042  Score=53.05  Aligned_cols=183  Identities=14%  Similarity=0.119  Sum_probs=107.8

Q ss_pred             EEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCCCe-
Q 019290           40 LAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFG-  118 (343)
Q Consensus        40 l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~~g-  118 (343)
                      ++++++|.+||+. .+.+|...|..+++.....  ..               .........+++.+++..|+.+ ...+ 
T Consensus        25 ~~~s~nG~~L~t~-~~d~Vi~idv~t~~~~l~s--~~---------------~ed~d~ita~~l~~d~~~L~~a-~rs~l   85 (775)
T KOG0319|consen   25 VAWSSNGQHLYTA-CGDRVIIIDVATGSIALPS--GS---------------NEDEDEITALALTPDEEVLVTA-SRSQL   85 (775)
T ss_pred             eeECCCCCEEEEe-cCceEEEEEccCCceeccc--CC---------------ccchhhhheeeecCCccEEEEe-eccce
Confidence            9999999988865 5667888888887653111  00               0112234567888855556666 3444 


Q ss_pred             EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEeec
Q 019290          119 LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYN  198 (343)
Q Consensus       119 i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~  198 (343)
                      +..+.+.++++..........   -+..+++++. |.+..+-.                 ..+.+-.+|...+.......
T Consensus        86 lrv~~L~tgk~irswKa~He~---Pvi~ma~~~~-g~LlAtgg-----------------aD~~v~VWdi~~~~~th~fk  144 (775)
T KOG0319|consen   86 LRVWSLPTGKLIRSWKAIHEA---PVITMAFDPT-GTLLATGG-----------------ADGRVKVWDIKNGYCTHSFK  144 (775)
T ss_pred             EEEEEcccchHhHhHhhccCC---CeEEEEEcCC-CceEEecc-----------------ccceEEEEEeeCCEEEEEec
Confidence            777888888755443332222   2457899994 75544322                 24567777777666665555


Q ss_pred             CC-CCcceeEEecCCCE-EEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEe
Q 019290          199 GL-SFPNGVALSNNNSF-LLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAM  264 (343)
Q Consensus       199 ~~-~~~~~i~~~~d~~~-lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~  264 (343)
                      +. .....++|+|+-.. +.++...++.+..|++.....  ..-....-.....++.+.+|+.-.++.
T Consensus       145 G~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~t--cl~~~~~H~S~vtsL~~~~d~~~~ls~  210 (775)
T KOG0319|consen  145 GHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRT--CLHTMILHKSAVTSLAFSEDSLELLSV  210 (775)
T ss_pred             CCCceEEEEEeCCccchhheeecCCCceEEEEEcccCch--HHHHHHhhhhheeeeeeccCCceEEEe
Confidence            53 44577888876543 345666789999999874221  011111111224566676766544443

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=97.28  E-value=0.039  Score=50.46  Aligned_cols=160  Identities=17%  Similarity=0.127  Sum_probs=95.0

Q ss_pred             ccCCCCCCCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCC
Q 019290           29 LQLPGVVGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTC  108 (343)
Q Consensus        29 ~~~~~~~~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~  108 (343)
                      +-+|+  -..+|+-++.|..++.++-.+.||.|...++.+-.+..                   ..-....-+.+.. ++
T Consensus        78 ~v~Pg--~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~-------------------aHYQ~ITcL~fs~-dg  135 (476)
T KOG0646|consen   78 IVLPG--PVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLS-------------------AHYQSITCLKFSD-DG  135 (476)
T ss_pred             ccccc--ceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHH-------------------hhccceeEEEEeC-CC
Confidence            34454  35788999999977788789999999999987543321                   1111245677876 77


Q ss_pred             eEEEEeCCCe-EEEEeCC-------CCeEEEcccccCCCCccCcceeEEeCC--CCeEEEEeCCcccccccceeeeeecC
Q 019290          109 DLYIADAYFG-LMVVGPN-------GGQAQQLASSAGGIPFRFTNDLDIDPN--TGIVYFTDSSIYFQRRQYFMSIATGD  178 (343)
Q Consensus       109 ~l~v~~~~~g-i~~~d~~-------~~~~~~~~~~~~~~~~~~~~~i~~d~~--dg~l~v~~~~~~~~~~~~~~~~~~~~  178 (343)
                      ..+|+...+| |..+..-       +..+.++....  .....+.++.++.-  +.++|-+-                  
T Consensus       136 s~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~--~HtlsITDl~ig~Gg~~~rl~TaS------------------  195 (476)
T KOG0646|consen  136 SHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFS--DHTLSITDLQIGSGGTNARLYTAS------------------  195 (476)
T ss_pred             cEEEecCCCccEEEEEEEeecccccCCCccceeeec--cCcceeEEEEecCCCccceEEEec------------------
Confidence            7777756666 5555431       11122211111  11234667777651  12333211                  


Q ss_pred             CCceEEEEeCCCCceEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEcc
Q 019290          179 RSGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQ  231 (343)
Q Consensus       179 ~~~~v~~~d~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~  231 (343)
                      ....+-.||...+++-.-..-...+..++++|.+..+|+.. ..|.|+...+-
T Consensus       196 ~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt-~~G~I~~~~~~  247 (476)
T KOG0646|consen  196 EDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGT-EEGKIFQNLLF  247 (476)
T ss_pred             CCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecC-CcceEEeeehh
Confidence            12345566776676532222335578999999998888764 57899998765

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=97.27  E-value=0.16  Score=47.24  Aligned_cols=227  Identities=12%  Similarity=0.091  Sum_probs=123.2

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      +..+|+.-++|. +.++..+.+|..||.+-....++                  ..+...+.+.-++...  +.|||+++
T Consensus       289 gv~~L~~lr~Gt-llSGgKDRki~~Wd~~y~k~r~~------------------elPe~~G~iRtv~e~~--~di~vGTt  347 (626)
T KOG2106|consen  289 GVFSLCMLRDGT-LLSGGKDRKIILWDDNYRKLRET------------------ELPEQFGPIRTVAEGK--GDILVGTT  347 (626)
T ss_pred             ceEEEEEecCcc-EeecCccceEEeccccccccccc------------------cCchhcCCeeEEecCC--CcEEEeec
Confidence            466777888888 55566777777787433322222                  1123445556666554  45999977


Q ss_pred             CCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEE
Q 019290          116 YFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTV  195 (343)
Q Consensus       116 ~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~  195 (343)
                      .+-|..=+.+.+ ++...+.. +   ...-+++..+ +...+++...                 .+.+..++...-++..
T Consensus       348 rN~iL~Gt~~~~-f~~~v~gh-~---delwgla~hp-s~~q~~T~gq-----------------dk~v~lW~~~k~~wt~  404 (626)
T KOG2106|consen  348 RNFILQGTLENG-FTLTVQGH-G---DELWGLATHP-SKNQLLTCGQ-----------------DKHVRLWNDHKLEWTK  404 (626)
T ss_pred             cceEEEeeecCC-ceEEEEec-c---cceeeEEcCC-ChhheeeccC-----------------cceEEEccCCceeEEE
Confidence            666776666644 32222221 1   2356888888 4788887654                 3345555522122222


Q ss_pred             eecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCC-CceeeCCCCCEEEEeccCCCccccc
Q 019290          196 MYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFP-DNIKSDSKGEFWIAMNSARGKIESN  274 (343)
Q Consensus       196 ~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p-~~i~~d~~G~lwi~~~~~~~~~~~~  274 (343)
                      +..  .......|+|.| . ....+..++..+++......    ..+... +.| .-+...++|..+..... .+.+   
T Consensus       405 ~~~--d~~~~~~fhpsg-~-va~Gt~~G~w~V~d~e~~~l----v~~~~d-~~~ls~v~ysp~G~~lAvgs~-d~~i---  471 (626)
T KOG2106|consen  405 IIE--DPAECADFHPSG-V-VAVGTATGRWFVLDTETQDL----VTIHTD-NEQLSVVRYSPDGAFLAVGSH-DNHI---  471 (626)
T ss_pred             Eec--CceeEeeccCcc-e-EEEeeccceEEEEeccccee----EEEEec-CCceEEEEEcCCCCEEEEecC-CCeE---
Confidence            221  235677788877 3 44556788888888655222    111112 323 34667888865544332 2222   


Q ss_pred             cccccccccCCCcccCCCeEEEECCCCCEEEEeeCCCCCccCCceeEEEe-CCEEEEecCCCCeEEE
Q 019290          275 KKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEGNTLNSVSEVQEY-GEYLYTGSSVQPYVVV  340 (343)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~~~~i~~  340 (343)
                                        -+|+++.+|.....+..-.+   ..++..--. +++..+++.....|+.
T Consensus       472 ------------------yiy~Vs~~g~~y~r~~k~~g---s~ithLDwS~Ds~~~~~~S~d~eiLy  517 (626)
T KOG2106|consen  472 ------------------YIYRVSANGRKYSRVGKCSG---SPITHLDWSSDSQFLVSNSGDYEILY  517 (626)
T ss_pred             ------------------EEEEECCCCcEEEEeeeecC---ceeEEeeecCCCceEEeccCceEEEE
Confidence                              67888888876554432112   233333322 5555566655555543

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=97.27  E-value=0.0096  Score=48.96  Aligned_cols=110  Identities=17%  Similarity=0.226  Sum_probs=68.1

Q ss_pred             CeeeEEEeCCCCeEEEEeCCCeEEEEeCCCCeEE-EcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeee
Q 019290           97 RPLGIKFNPVTCDLYIADAYFGLMVVGPNGGQAQ-QLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIA  175 (343)
Q Consensus        97 ~p~gi~~~~~~~~l~v~~~~~gi~~~d~~~~~~~-~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~  175 (343)
                      .-.|++.+  +.+|+.++...-++.-||++=... .+.-..++.+...+|.+-.-.  |.+|.--..             
T Consensus       132 eGWgLt~d--~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~Vd--G~lyANVw~-------------  194 (262)
T COG3823         132 EGWGLTSD--DKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWVD--GELYANVWQ-------------  194 (262)
T ss_pred             cceeeecC--CcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeeec--cEEEEeeee-------------
Confidence            44677666  567998864445888888752211 111234455566677775543  777762221             


Q ss_pred             ecCCCceEEEEeCCCCceEEee--c-----------CCCCcceeEEecCCCEEEEEEcCCCeEEE
Q 019290          176 TGDRSGRLLKYDPLKKNVTVMY--N-----------GLSFPNGVALSNNNSFLLLAESATLKILR  227 (343)
Q Consensus       176 ~~~~~~~v~~~d~~~~~~~~~~--~-----------~~~~~~~i~~~~d~~~lyv~~~~~~~i~~  227 (343)
                          ..+|.|++|++|++....  +           ...-.||||.++++..+|++.-.-..++-
T Consensus       195 ----t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK~wp~lfE  255 (262)
T COG3823         195 ----TTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGKLWPLLFE  255 (262)
T ss_pred             ----ecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecCcCceeEE
Confidence                457999999988875322  1           12246899999998889998654444433

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=97.26  E-value=0.11  Score=45.44  Aligned_cols=228  Identities=14%  Similarity=0.137  Sum_probs=117.9

Q ss_pred             CCCcCCeeeEEEeCCCCeEEEEeCCCe-EEEEeCC--C--CeEEEcc---cc-cCCCCccCcceeEEeCCCCeEEEEeCC
Q 019290           92 EPLCGRPLGIKFNPVTCDLYIADAYFG-LMVVGPN--G--GQAQQLA---SS-AGGIPFRFTNDLDIDPNTGIVYFTDSS  162 (343)
Q Consensus        92 ~~~~~~p~gi~~~~~~~~l~v~~~~~g-i~~~d~~--~--~~~~~~~---~~-~~~~~~~~~~~i~~d~~dg~l~v~~~~  162 (343)
                      ++....+.||++.+ .+.+||++.+.+ ...||.+  +  +..+.+.   .. ........|.++++... ..+-++...
T Consensus        19 Dp~L~N~WGia~~p-~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~-~~F~vt~~g   96 (336)
T TIGR03118        19 DPGLRNAWGLSYRP-GGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGS-DTFVVSGEG   96 (336)
T ss_pred             CccccccceeEecC-CCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCC-CceEEcCCC
Confidence            34556789999999 899999987776 4455554  1  1111111   11 11111235677777652 333333321


Q ss_pred             cccccccceeeeeecCCCceEEEEeCCCCce------EEeecC--CCCcceeEEecC--CCEEEEEEcCCCeEEEEEccC
Q 019290          163 IYFQRRQYFMSIATGDRSGRLLKYDPLKKNV------TVMYNG--LSFPNGVALSNN--NSFLLLAESATLKILRFWLQG  232 (343)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~------~~~~~~--~~~~~~i~~~~d--~~~lyv~~~~~~~i~~~~~~~  232 (343)
                      .. +...+    .-.+..+.|..|.+.-+..      ..+...  ..--.|+++...  +..||.++..+++|-+||-.=
T Consensus        97 ~~-~~a~F----if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f  171 (336)
T TIGR03118        97 IT-GPSRF----LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSF  171 (336)
T ss_pred             cc-cceeE----EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcc
Confidence            10 00000    0112245566665432111      112111  122356777633  678999999999999997321


Q ss_pred             ccccccceeeecCCCC-----CCceeeCCCCCEEEEeccCCCccccccccccccccCCCcc-cCCCeEEEECCCCCEEEE
Q 019290          233 ERTTYTPQLFAEMPRF-----PDNIKSDSKGEFWIAMNSARGKIESNKKTAFCEETAKPWF-LRDPVGVKFDVNGNVVDV  306 (343)
Q Consensus       233 ~~~~~~~~~~~~~~~~-----p~~i~~d~~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~d~~g~~~~~  306 (343)
                      ... ....-+. .+..     |.++.. -.|+|||+=-. .+.-           ...... .-.+-|-.||.+|+.++.
T Consensus       172 ~~~-~~~g~F~-DP~iPagyAPFnIqn-ig~~lyVtYA~-qd~~-----------~~d~v~G~G~G~VdvFd~~G~l~~r  236 (336)
T TIGR03118       172 RPP-PLPGSFI-DPALPAGYAPFNVQN-LGGTLYVTYAQ-QDAD-----------RNDEVAGAGLGYVNVFTLNGQLLRR  236 (336)
T ss_pred             ccc-cCCCCcc-CCCCCCCCCCcceEE-ECCeEEEEEEe-cCCc-----------ccccccCCCcceEEEEcCCCcEEEE
Confidence            100 0000111 1222     444432 35788886332 1100           000001 113578889999999998


Q ss_pred             eeCCCCCccCCceeEE-------EeCCEEEEecCCCCeEEEEcC
Q 019290          307 LDGNEGNTLNSVSEVQ-------EYGEYLYTGSSVQPYVVVIKA  343 (343)
Q Consensus       307 ~~~~~~~~~~~~~~~~-------~~~g~l~i~~~~~~~i~~~~~  343 (343)
                      +.+. + ..+.+..+.       ...|.|.||++...+|-.||+
T Consensus       237 ~as~-g-~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~  278 (336)
T TIGR03118       237 VASS-G-RLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDP  278 (336)
T ss_pred             eccC-C-cccCCceeeeChhhhCCCCCCeEEeecCCceeEEecC
Confidence            8642 3 234443332       237999999999999998874

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=97.21  E-value=0.14  Score=47.69  Aligned_cols=268  Identities=15%  Similarity=0.114  Sum_probs=138.0

Q ss_pred             ccccccccCCCCCCCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcC---Cee
Q 019290           23 SKSYQQLQLPGVVGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCG---RPL   99 (343)
Q Consensus        23 ~~~~~~~~~~~~~~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~p~   99 (343)
                      ....+++.--..+.-.++.+.+.|+.+.+.+...+.-.||-++.++.++...-.+-          ..+..+.+   ..+
T Consensus       203 ~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI----------~Dm~nTKGHia~lt  272 (641)
T KOG0772|consen  203 MRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYI----------RDMYNTKGHIAELT  272 (641)
T ss_pred             chhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhh----------hhhhccCCceeeee
Confidence            44466665556667889999999886666556666777777776666653211110          00001111   123


Q ss_pred             eEEEeCCCCeEEEEeCCCe-EEEEeCCCC--eEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeee
Q 019290          100 GIKFNPVTCDLYIADAYFG-LMVVGPNGG--QAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIAT  176 (343)
Q Consensus       100 gi~~~~~~~~l~v~~~~~g-i~~~d~~~~--~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~  176 (343)
                      .-+++|.....+++...+| +..+|.+..  +.+.+-....+..-..+...++++ ||.++.+.-.              
T Consensus       273 ~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nr-dg~~iAagc~--------------  337 (641)
T KOG0772|consen  273 CGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNR-DGKLIAAGCL--------------  337 (641)
T ss_pred             ccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCC-Ccchhhhccc--------------
Confidence            3345564455666655666 666666432  233332222222224466778888 6887543211              


Q ss_pred             cCCCceEEEEeCCCCce------EEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCC-CCC
Q 019290          177 GDRSGRLLKYDPLKKNV------TVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMP-RFP  249 (343)
Q Consensus       177 ~~~~~~v~~~d~~~~~~------~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~p  249 (343)
                         .|.|-.|+..+--+      +...........+.|+.||+.|. +-...+.+-.||+..-..  .......++ .+|
T Consensus       338 ---DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~Ll-SRg~D~tLKvWDLrq~kk--pL~~~tgL~t~~~  411 (641)
T KOG0772|consen  338 ---DGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLL-SRGFDDTLKVWDLRQFKK--PLNVRTGLPTPFP  411 (641)
T ss_pred             ---CCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhh-hccCCCceeeeecccccc--chhhhcCCCccCC
Confidence               34455555321111      11123345678899999998654 445678899999864211  111111122 123


Q ss_pred             C-ceeeCCCCCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECCC-CCEEEEeeCCCCCccCCceeE--EEeC
Q 019290          250 D-NIKSDSKGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVN-GNVVDVLDGNEGNTLNSVSEV--QEYG  325 (343)
Q Consensus       250 ~-~i~~d~~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~~~~~--~~~~  325 (343)
                      . +-+++|+.+|.++....-....                  .+.++.||+. -..+..+.-+.    ..+..+  .+.-
T Consensus       412 ~tdc~FSPd~kli~TGtS~~~~~~------------------~g~L~f~d~~t~d~v~ki~i~~----aSvv~~~WhpkL  469 (641)
T KOG0772|consen  412 GTDCCFSPDDKLILTGTSAPNGMT------------------AGTLFFFDRMTLDTVYKIDIST----ASVVRCLWHPKL  469 (641)
T ss_pred             CCccccCCCceEEEecccccCCCC------------------CceEEEEeccceeeEEEecCCC----ceEEEEeecchh
Confidence            2 3568899888877543222111                  2356677663 23333332211    111111  2335


Q ss_pred             CEEEEecCCCCeEEEEcC
Q 019290          326 EYLYTGSSVQPYVVVIKA  343 (343)
Q Consensus       326 g~l~i~~~~~~~i~~~~~  343 (343)
                      ++|++|+.+...=+.|++
T Consensus       470 NQi~~gsgdG~~~vyYdp  487 (641)
T KOG0772|consen  470 NQIFAGSGDGTAHVYYDP  487 (641)
T ss_pred             hheeeecCCCceEEEECc
Confidence            677777777665555553

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=97.20  E-value=0.045  Score=53.05  Aligned_cols=180  Identities=13%  Similarity=0.099  Sum_probs=106.8

Q ss_pred             CceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCe-eeEEEeCCCCeEEEEeC
Q 019290           37 PESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRP-LGIKFNPVTCDLYIADA  115 (343)
Q Consensus        37 p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~gi~~~~~~~~l~v~~~  115 (343)
                      ..+..+.|+.+.|.....+..+..|...+....+.-                    ..-..| ..+.|.| . ..||++.
T Consensus       454 Vyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y--------------------~GH~~PVwdV~F~P-~-GyYFata  511 (707)
T KOG0263|consen  454 VYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIY--------------------KGHLAPVWDVQFAP-R-GYYFATA  511 (707)
T ss_pred             eeeeeecccccceeeccCCcceeeeecccceeEEEe--------------------cCCCcceeeEEecC-C-ceEEEec
Confidence            446677888887777778887777777664433221                    111223 4577776 4 4555533


Q ss_pred             -CCe---EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCC
Q 019290          116 -YFG---LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKK  191 (343)
Q Consensus       116 -~~g---i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~  191 (343)
                       +++   ++..|..  +..++...    +..-+..+.+.|  +.-|+++.+.                ...|-.||..+|
T Consensus       512 s~D~tArLWs~d~~--~PlRifag----hlsDV~cv~FHP--Ns~Y~aTGSs----------------D~tVRlWDv~~G  567 (707)
T KOG0263|consen  512 SHDQTARLWSTDHN--KPLRIFAG----HLSDVDCVSFHP--NSNYVATGSS----------------DRTVRLWDVSTG  567 (707)
T ss_pred             CCCceeeeeecccC--Cchhhhcc----cccccceEEECC--cccccccCCC----------------CceEEEEEcCCC
Confidence             233   4444431  12122111    123456678899  4666665442                345666777666


Q ss_pred             ceEEeecC-CCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEecc
Q 019290          192 NVTVMYNG-LSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNS  266 (343)
Q Consensus       192 ~~~~~~~~-~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~~  266 (343)
                      ...++..+ -.....++++|+|++| ++....+.|..||+.+...+.   .+..-.+....+.+..||+++++...
T Consensus       568 ~~VRiF~GH~~~V~al~~Sp~Gr~L-aSg~ed~~I~iWDl~~~~~v~---~l~~Ht~ti~SlsFS~dg~vLasgg~  639 (707)
T KOG0263|consen  568 NSVRIFTGHKGPVTALAFSPCGRYL-ASGDEDGLIKIWDLANGSLVK---QLKGHTGTIYSLSFSRDGNVLASGGA  639 (707)
T ss_pred             cEEEEecCCCCceEEEEEcCCCceE-eecccCCcEEEEEcCCCcchh---hhhcccCceeEEEEecCCCEEEecCC
Confidence            65555443 4557899999999865 455678999999987632211   11111233556788899999998776

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.20  E-value=0.029  Score=54.14  Aligned_cols=159  Identities=11%  Similarity=0.024  Sum_probs=94.9

Q ss_pred             ccccccccCCCCCCCceEEEcCCCCeeEEEec----CCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCe
Q 019290           23 SKSYQQLQLPGVVGPESLAFDCNGEGPYVGVS----DGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRP   98 (343)
Q Consensus        23 ~~~~~~~~~~~~~~p~~l~~d~~g~~l~~~~~----~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p   98 (343)
                      .+...|+.+++  .|..+.++++|..+|++..    ...+...+..+..+..+...                       .
T Consensus       225 meV~~qV~Vdg--npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni-----------------------~  279 (635)
T PRK02888        225 MEVAWQVMVDG--NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNI-----------------------A  279 (635)
T ss_pred             ceEEEEEEeCC--CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEch-----------------------H
Confidence            45567777777  8999999999998887642    22333333332222211100                       0


Q ss_pred             eeEEEeCCCCeEEEEeCCCeEEEEeCCC-----CeEEEcccccCCCCccCcceeEEeCCCCe-EEEEeCCccccccccee
Q 019290           99 LGIKFNPVTCDLYIADAYFGLMVVGPNG-----GQAQQLASSAGGIPFRFTNDLDIDPNTGI-VYFTDSSIYFQRRQYFM  172 (343)
Q Consensus        99 ~gi~~~~~~~~l~v~~~~~gi~~~d~~~-----~~~~~~~~~~~~~~~~~~~~i~~d~~dg~-l~v~~~~~~~~~~~~~~  172 (343)
                      ....+.++++..|++  .+.|-.+|..+     .++......  +   ..|+++.++| ||+ +|++..-          
T Consensus       280 ~iea~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIPV--G---KsPHGV~vSP-DGkylyVankl----------  341 (635)
T PRK02888        280 RIEEAVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVPV--P---KNPHGVNTSP-DGKYFIANGKL----------  341 (635)
T ss_pred             HHHHhhhCCCEEEEC--CCEEEEEECCccccCCcceEEEEEC--C---CCccceEECC-CCCEEEEeCCC----------
Confidence            001122324566663  46799999887     234333222  2   5689999999 576 5554432          


Q ss_pred             eeeecCCCceEEEEeCCCCce------------EEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290          173 SIATGDRSGRLLKYDPLKKNV------------TVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQG  232 (343)
Q Consensus       173 ~~~~~~~~~~v~~~d~~~~~~------------~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~  232 (343)
                             +..|..+|.++.+.            ..-..-...|--.+|+.+|. .|.+-..+++|.+|+++.
T Consensus       342 -------S~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~-aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        342 -------SPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGN-AYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             -------CCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCC-EEEeEeecceeEEEehHH
Confidence                   45677777654221            11112245677888988875 898888889999999875

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=97.18  E-value=0.049  Score=47.46  Aligned_cols=154  Identities=15%  Similarity=0.162  Sum_probs=97.5

Q ss_pred             CceEEEcCCCCeeEEEecCCEEEEEEcCCCC----eEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEE
Q 019290           37 PESLAFDCNGEGPYVGVSDGRILKWKAANSG----WTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYI  112 (343)
Q Consensus        37 p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v  112 (343)
                      ..++.+-|...+|..+..++.|-.||.....    ++.|.                     ..-....|.++|.+..|.+
T Consensus       175 vn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~q---------------------d~~~vrsiSfHPsGefllv  233 (430)
T KOG0640|consen  175 VNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQ---------------------DTEPVRSISFHPSGEFLLV  233 (430)
T ss_pred             ccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhh---------------------ccceeeeEeecCCCceEEE
Confidence            5688899999988888899988888875432    22221                     1223568999995556777


Q ss_pred             EeCCCeEEEEeCCCCeEEEcccc-cCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCC
Q 019290          113 ADAYFGLMVVGPNGGQAQQLASS-AGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKK  191 (343)
Q Consensus       113 ~~~~~gi~~~d~~~~~~~~~~~~-~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~  191 (343)
                      ++...-+..||.+|-  +.+... +..+....++++...+. ++||++.+.                 .|.|-.||.-++
T Consensus       234 gTdHp~~rlYdv~T~--QcfvsanPd~qht~ai~~V~Ys~t-~~lYvTaSk-----------------DG~IklwDGVS~  293 (430)
T KOG0640|consen  234 GTDHPTLRLYDVNTY--QCFVSANPDDQHTGAITQVRYSST-GSLYVTASK-----------------DGAIKLWDGVSN  293 (430)
T ss_pred             ecCCCceeEEeccce--eEeeecCcccccccceeEEEecCC-ccEEEEecc-----------------CCcEEeeccccH
Confidence            754445788888864  343322 22333456888889995 999998765                 455666775433


Q ss_pred             ce-EEe--ecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290          192 NV-TVM--YNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQG  232 (343)
Q Consensus       192 ~~-~~~--~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~  232 (343)
                      +. +.+  ..+........|..+++++.-+ -.+..+..|.+.+
T Consensus       294 rCv~t~~~AH~gsevcSa~Ftkn~kyiLsS-G~DS~vkLWEi~t  336 (430)
T KOG0640|consen  294 RCVRTIGNAHGGSEVCSAVFTKNGKYILSS-GKDSTVKLWEIST  336 (430)
T ss_pred             HHHHHHHhhcCCceeeeEEEccCCeEEeec-CCcceeeeeeecC
Confidence            32 122  1234556667788888754333 2345566666654

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=97.17  E-value=0.014  Score=52.61  Aligned_cols=186  Identities=12%  Similarity=0.057  Sum_probs=111.3

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      ....+++-|+|++|-++..+..=-.||..++.-....                   +.......++++.+ +|.|..+..
T Consensus       263 RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~Q-------------------EGHs~~v~~iaf~~-DGSL~~tGG  322 (459)
T KOG0272|consen  263 RVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQ-------------------EGHSKGVFSIAFQP-DGSLAATGG  322 (459)
T ss_pred             hheeeeecCCCceeeecccccchhhcccccchhhHhh-------------------cccccccceeEecC-CCceeeccC
Confidence            4668889999997777777765555677665322221                   12233467899998 888877633


Q ss_pred             CCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceE
Q 019290          116 YFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVT  194 (343)
Q Consensus       116 ~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~  194 (343)
                      -+. -..+|.++|.-..+...    ....+.+++++|+ |....+-++.               ...+||.+... ....
T Consensus       323 lD~~~RvWDlRtgr~im~L~g----H~k~I~~V~fsPN-Gy~lATgs~D---------------nt~kVWDLR~r-~~ly  381 (459)
T KOG0272|consen  323 LDSLGRVWDLRTGRCIMFLAG----HIKEILSVAFSPN-GYHLATGSSD---------------NTCKVWDLRMR-SELY  381 (459)
T ss_pred             ccchhheeecccCcEEEEecc----cccceeeEeECCC-ceEEeecCCC---------------CcEEEeeeccc-ccce
Confidence            333 45779998865443332    2245789999995 8887765541               13456655432 2333


Q ss_pred             EeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEec
Q 019290          195 VMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMN  265 (343)
Q Consensus       195 ~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~  265 (343)
                      .+.....-...+.++|+.+...++.+.++.+-.|...+-   ...+.++.-.+..-++.+.++|...++..
T Consensus       382 ~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~---~~~ksLaGHe~kV~s~Dis~d~~~i~t~s  449 (459)
T KOG0272|consen  382 TIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTW---SPLKSLAGHEGKVISLDISPDSQAIATSS  449 (459)
T ss_pred             ecccccchhhheEecccCCeEEEEcccCcceeeecCCCc---ccchhhcCCccceEEEEeccCCceEEEec
Confidence            444444556788898876667778788888888875431   11222222222223344566776555543

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=97.16  E-value=0.14  Score=46.76  Aligned_cols=136  Identities=18%  Similarity=0.258  Sum_probs=75.0

Q ss_pred             ceEEEEeCCCCceEEee-------cCCCCcceeEEecC---CCEEEEEEcCCCeEEEEEccC--cccc--ccceeeecCC
Q 019290          181 GRLLKYDPLKKNVTVMY-------NGLSFPNGVALSNN---NSFLLLAESATLKILRFWLQG--ERTT--YTPQLFAEMP  246 (343)
Q Consensus       181 ~~v~~~d~~~~~~~~~~-------~~~~~~~~i~~~~d---~~~lyv~~~~~~~i~~~~~~~--~~~~--~~~~~~~~~~  246 (343)
                      -++|++|+.++.++.+.       .....+.|+|+..+   +....+....++.+..|.+..  +..+  ...+.| ...
T Consensus       129 l~~f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f-~~~  207 (381)
T PF02333_consen  129 LRLFRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREF-KVG  207 (381)
T ss_dssp             EEEEEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEE-E-S
T ss_pred             EEEEEecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEe-cCC
Confidence            35888998777765442       23445789998642   443333455678898888753  2211  111222 244


Q ss_pred             CCCCceeeCC-CCCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECC--CC-CEEEEeeCCCC-CccCCc---
Q 019290          247 RFPDNIKSDS-KGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDV--NG-NVVDVLDGNEG-NTLNSV---  318 (343)
Q Consensus       247 ~~p~~i~~d~-~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~--~g-~~~~~~~~~~~-~~~~~~---  318 (343)
                      ..+.++++|. .|.||++.-.                         .+|.+|+.  ++ ..-..+....+ ....-+   
T Consensus       208 sQ~EGCVVDDe~g~LYvgEE~-------------------------~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGl  262 (381)
T PF02333_consen  208 SQPEGCVVDDETGRLYVGEED-------------------------VGIWRYDAEPEGGNDRTLVASADGDGLVADVEGL  262 (381)
T ss_dssp             S-EEEEEEETTTTEEEEEETT-------------------------TEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEE
T ss_pred             CcceEEEEecccCCEEEecCc-------------------------cEEEEEecCCCCCCcceeeecccccccccCccce
Confidence            5688899876 5899999865                         48888864  32 22222211112 112222   


Q ss_pred             eeEEE-e-CCEEEEecCCCCeEEEEc
Q 019290          319 SEVQE-Y-GEYLYTGSSVQPYVVVIK  342 (343)
Q Consensus       319 ~~~~~-~-~g~l~i~~~~~~~i~~~~  342 (343)
                      +.+.. + .|+|.+++-..++..+|+
T Consensus       263 aly~~~~g~gYLivSsQG~~sf~Vy~  288 (381)
T PF02333_consen  263 ALYYGSDGKGYLIVSSQGDNSFAVYD  288 (381)
T ss_dssp             EEEE-CCC-EEEEEEEGGGTEEEEEE
T ss_pred             EEEecCCCCeEEEEEcCCCCeEEEEe
Confidence            22221 2 578999999999888886

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.16  E-value=0.26  Score=47.43  Aligned_cols=260  Identities=13%  Similarity=0.055  Sum_probs=119.5

Q ss_pred             CeeEEEecCCEEEEEEcCCCCeE-EeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC---------C
Q 019290           47 EGPYVGVSDGRILKWKAANSGWT-EFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA---------Y  116 (343)
Q Consensus        47 ~~l~~~~~~g~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~---------~  116 (343)
                      ..+|++..++.|+.+|.++++.. ++......              ........+..+.  ++.+|++..         .
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~--------------~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~  174 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQV--------------PPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVR  174 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCCCc--------------CcceEecCCCEEE--CCEEEEeccccccccCCCC
Confidence            34888888999999999887533 11110000              0000000122344  467777642         1


Q ss_pred             CeEEEEeCCCCeEEEcccccCCCC-----------------ccCcceeEEeCCCCeEEEEeCCcccccccceeee--eec
Q 019290          117 FGLMVVGPNGGQAQQLASSAGGIP-----------------FRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSI--ATG  177 (343)
Q Consensus       117 ~gi~~~d~~~~~~~~~~~~~~~~~-----------------~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~--~~~  177 (343)
                      ..++.+|.++|+...........+                 ...-...++|+.++.+|++.....  ...+....  ...
T Consensus       175 g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~--~~~~~~~~~~~~~  252 (488)
T cd00216         175 GALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGS--PWNWGGRRTPGDN  252 (488)
T ss_pred             cEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCC--CCccCCccCCCCC
Confidence            248999999998765433211100                 001124577754578999764310  00000000  000


Q ss_pred             CCCceEEEEeCCCCceEEeecCC-------CCcceeEEe----cCCC---EEEEEEcCCCeEEEEEccCccccccceeee
Q 019290          178 DRSGRLLKYDPLKKNVTVMYNGL-------SFPNGVALS----NNNS---FLLLAESATLKILRFWLQGERTTYTPQLFA  243 (343)
Q Consensus       178 ~~~~~v~~~d~~~~~~~~~~~~~-------~~~~~i~~~----~d~~---~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~  243 (343)
                      ...+.|+.+|.++|+..-..+..       ..+....+.    .++.   .+|+. +.++.++.++..+    ++. ++.
T Consensus       253 ~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g-~~~G~l~ald~~t----G~~-~W~  326 (488)
T cd00216         253 LYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHA-PKNGFFYVLDRTT----GKL-ISA  326 (488)
T ss_pred             CceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEE-CCCceEEEEECCC----CcE-eeE
Confidence            11347999999888765322111       111111111    1232   34444 4678899999765    221 111


Q ss_pred             -cCCCCCCceeeCCCCCEEEEeccCCCccccccccccccccCCCcc-cCCCeEEEECC-CCCEEEEeeCCCCC------c
Q 019290          244 -EMPRFPDNIKSDSKGEFWIAMNSARGKIESNKKTAFCEETAKPWF-LRDPVGVKFDV-NGNVVDVLDGNEGN------T  314 (343)
Q Consensus       244 -~~~~~p~~i~~d~~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~d~-~g~~~~~~~~~~~~------~  314 (343)
                       +..  -.++..++ +.+|+........+. ..       ...++. ...+.++++|. +|+.+=........      .
T Consensus       327 ~~~~--~~~~~~~~-~~vyv~~~~~~~~~~-~~-------~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~  395 (488)
T cd00216         327 RPEV--EQPMAYDP-GLVYLGAFHIPLGLP-PQ-------KKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGF  395 (488)
T ss_pred             eEee--ccccccCC-ceEEEccccccccCc-cc-------ccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCC
Confidence             111  12344554 778886532000000 00       000111 22468999996 67765443322110      0


Q ss_pred             cCCceeEEEeCCEEEEecCCCCeEEEEc
Q 019290          315 LNSVSEVQEYGEYLYTGSSVQPYVVVIK  342 (343)
Q Consensus       315 ~~~~~~~~~~~g~l~i~~~~~~~i~~~~  342 (343)
                      ....+.+...++.||+++. ...+.-++
T Consensus       396 ~~~~~~~~~~g~~v~~g~~-dG~l~ald  422 (488)
T cd00216         396 PHWGGSLATAGNLVFAGAA-DGYFRAFD  422 (488)
T ss_pred             cccCcceEecCCeEEEECC-CCeEEEEE
Confidence            0111223344677887763 34454443

The alignment model contains an 8-bladed beta-propeller.

>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function

Probab=97.15  E-value=0.008  Score=57.78  Aligned_cols=124  Identities=19%  Similarity=0.285  Sum_probs=77.1

Q ss_pred             CcCCeeeEEEeCCCCeEEEEeCC-C-------------------eEEEEeCCCC-------eEEEccccc----------
Q 019290           94 LCGRPLGIKFNPVTCDLYIADAY-F-------------------GLMVVGPNGG-------QAQQLASSA----------  136 (343)
Q Consensus        94 ~~~~p~gi~~~~~~~~l~v~~~~-~-------------------gi~~~d~~~~-------~~~~~~~~~----------  136 (343)
                      .+.+|.++.+++.++.+|++.+. .                   .|++++++.+       .+..+....          
T Consensus       348 ~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~~  427 (524)
T PF05787_consen  348 PFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNGS  427 (524)
T ss_pred             cccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCccccccccc
Confidence            35578999999988899998432 1                   3889987755       333332111          


Q ss_pred             ---CCCCccCcceeEEeCCCCeEEEEeCCcccccc------cc-eeeeeecCCCceEEEEeCCCCceEEeecCC--CCcc
Q 019290          137 ---GGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRR------QY-FMSIATGDRSGRLLKYDPLKKNVTVMYNGL--SFPN  204 (343)
Q Consensus       137 ---~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~------~~-~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~--~~~~  204 (343)
                         ....+..|..|++|+ +|+|||.+........      +. .+.+.... ...++..++.+++++++....  ....
T Consensus       428 ~~~~~~~f~sPDNL~~d~-~G~LwI~eD~~~~~~~l~g~t~~G~~~~~~~~~-G~~~~~~~~~~g~~~rf~~~P~gaE~t  505 (524)
T PF05787_consen  428 NKCDDNGFASPDNLAFDP-DGNLWIQEDGGGSNNNLPGVTPDGEVYDFARND-GNNVWAYDPDTGELKRFLVGPNGAEIT  505 (524)
T ss_pred             CcccCCCcCCCCceEECC-CCCEEEEeCCCCCCcccccccccCceeeeeecc-cceeeeccccccceeeeccCCCCcccc
Confidence               123467889999999 5999999765321100      00 00000000 011555677778887776443  3468


Q ss_pred             eeEEecCCCEEEEEE
Q 019290          205 GVALSNNNSFLLLAE  219 (343)
Q Consensus       205 ~i~~~~d~~~lyv~~  219 (343)
                      |++++||+++|++.-
T Consensus       506 G~~fspDg~tlFvni  520 (524)
T PF05787_consen  506 GPCFSPDGRTLFVNI  520 (524)
T ss_pred             cceECCCCCEEEEEE
Confidence            999999999998853

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=97.13  E-value=0.067  Score=47.17  Aligned_cols=93  Identities=17%  Similarity=0.219  Sum_probs=60.5

Q ss_pred             eeeEEEeCCCCeEEEEeC-------------CCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcc
Q 019290           98 PLGIKFNPVTCDLYIADA-------------YFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIY  164 (343)
Q Consensus        98 p~gi~~~~~~~~l~v~~~-------------~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~  164 (343)
                      -+|+++.. +.--||+..             .+|-..+|..++++..  .     .+.++++--..  +|+||+.|+.  
T Consensus       154 LNGlA~~~-g~p~yVTa~~~sD~~~gWR~~~~~gG~vidv~s~evl~--~-----GLsmPhSPRWh--dgrLwvldsg--  221 (335)
T TIGR03032       154 LNGMALDD-GEPRYVTALSQSDVADGWREGRRDGGCVIDIPSGEVVA--S-----GLSMPHSPRWY--QGKLWLLNSG--  221 (335)
T ss_pred             ecceeeeC-CeEEEEEEeeccCCcccccccccCCeEEEEeCCCCEEE--c-----CccCCcCCcEe--CCeEEEEECC--
Confidence            46888875 555665521             1233345555543321  1     12345554444  4899999987  


Q ss_pred             cccccceeeeeecCCCceEEEEeCCCCceEEeecCCCCcceeEEecCCCEEEEEE
Q 019290          165 FQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAE  219 (343)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~  219 (343)
                                     .+.+.++|+++|+.+.+..-...+.|+++.  |+.++|.-
T Consensus       222 ---------------tGev~~vD~~~G~~e~Va~vpG~~rGL~f~--G~llvVgm  259 (335)
T TIGR03032       222 ---------------RGELGYVDPQAGKFQPVAFLPGFTRGLAFA--GDFAFVGL  259 (335)
T ss_pred             ---------------CCEEEEEcCCCCcEEEEEECCCCCccccee--CCEEEEEe
Confidence                           788999999889888776555678999987  77777653

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=97.11  E-value=0.1  Score=47.74  Aligned_cols=157  Identities=15%  Similarity=0.168  Sum_probs=77.3

Q ss_pred             CCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCe--EEEEe-CC---C
Q 019290           44 CNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCD--LYIAD-AY---F  117 (343)
Q Consensus        44 ~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~--l~v~~-~~---~  117 (343)
                      +...++......++|+.||.+++....+....  .  ++            .....++.+.  ++.  |.++. ..   +
T Consensus        66 p~kSlIigTdK~~GL~VYdL~Gk~lq~~~~Gr--~--NN------------VDvrygf~l~--g~~vDlavas~R~~g~n  127 (381)
T PF02333_consen   66 PAKSLIIGTDKKGGLYVYDLDGKELQSLPVGR--P--NN------------VDVRYGFPLN--GKTVDLAVASDRSDGRN  127 (381)
T ss_dssp             GGG-EEEEEETTTEEEEEETTS-EEEEE-SS---E--EE------------EEEEEEEEET--TEEEEEEEEEE-CCCT-
T ss_pred             cccceEEEEeCCCCEEEEcCCCcEEEeecCCC--c--ce------------eeeecceecC--CceEEEEEEecCcCCCC
Confidence            44554444556789999999987766552100  0  00            0001233332  222  33332 21   2


Q ss_pred             e--EEEEeCCCCeEEEcccccC--CCCccCcceeEE--eCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEe-CCC
Q 019290          118 G--LMVVGPNGGQAQQLASSAG--GIPFRFTNDLDI--DPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYD-PLK  190 (343)
Q Consensus       118 g--i~~~d~~~~~~~~~~~~~~--~~~~~~~~~i~~--d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~~  190 (343)
                      .  +|.+|++++.++.+.....  .....-+.+++.  ++.+|.+|+-...+              .+.-..|++. ...
T Consensus       128 ~l~~f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k--------------~G~~~Qy~L~~~~~  193 (381)
T PF02333_consen  128 SLRLFRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGK--------------DGRVEQYELTDDGD  193 (381)
T ss_dssp             EEEEEEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEET--------------TSEEEEEEEEE-TT
T ss_pred             eEEEEEecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecC--------------CceEEEEEEEeCCC
Confidence            3  7888988887776532111  111233667775  44347777633221              0011234442 222


Q ss_pred             CceE----EeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCc
Q 019290          191 KNVT----VMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGE  233 (343)
Q Consensus       191 ~~~~----~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~  233 (343)
                      +.+.    +-....+.+.|.+++...+.||+++. +..||+|+.+..
T Consensus       194 g~v~~~lVR~f~~~sQ~EGCVVDDe~g~LYvgEE-~~GIW~y~Aep~  239 (381)
T PF02333_consen  194 GKVSATLVREFKVGSQPEGCVVDDETGRLYVGEE-DVGIWRYDAEPE  239 (381)
T ss_dssp             SSEEEEEEEEEE-SS-EEEEEEETTTTEEEEEET-TTEEEEEESSCC
T ss_pred             CcEeeEEEEEecCCCcceEEEEecccCCEEEecC-ccEEEEEecCCC
Confidence            3321    11223356899999988889999985 679999998743

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.07  E-value=0.33  Score=47.11  Aligned_cols=36  Identities=14%  Similarity=0.261  Sum_probs=27.2

Q ss_pred             eEEEeCCCCeEEEEeCC----------------CeEEEEeCCCCeEEEcccc
Q 019290          100 GIKFNPVTCDLYIADAY----------------FGLMVVGPNGGQAQQLASS  135 (343)
Q Consensus       100 gi~~~~~~~~l~v~~~~----------------~gi~~~d~~~~~~~~~~~~  135 (343)
                      .+++|++.+.||++...                +.|+.+|.+||+++...+.
T Consensus       238 ~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~  289 (527)
T TIGR03075       238 TGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQT  289 (527)
T ss_pred             ceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeC
Confidence            47889878889998511                2589999999998876544

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=97.02  E-value=0.051  Score=46.42  Aligned_cols=164  Identities=13%  Similarity=0.090  Sum_probs=96.3

Q ss_pred             cccccCCCCCCCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeC
Q 019290           26 YQQLQLPGVVGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNP  105 (343)
Q Consensus        26 ~~~~~~~~~~~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~  105 (343)
                      +.-++.|. .++....+++-+..+.++..+|.|-+||..++....  .+.                .......+.|.+.+
T Consensus       140 ~~kI~t~~-skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v--~s~----------------~~h~~~Ind~q~s~  200 (327)
T KOG0643|consen  140 YLKIPTPD-SKITSALWGPLGETIIAGHEDGSISIYDARTGKELV--DSD----------------EEHSSKINDLQFSR  200 (327)
T ss_pred             eEEecCCc-cceeeeeecccCCEEEEecCCCcEEEEEcccCceee--ech----------------hhhccccccccccC
Confidence            45566665 578899999999988999999999999998753221  110                01122467888998


Q ss_pred             CCCeEEEEeCCCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEE
Q 019290          106 VTCDLYIADAYFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLL  184 (343)
Q Consensus       106 ~~~~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~  184 (343)
                       ++..++....+. -..+|..+=.+..-....     .-+|..++.|..+.+..+...                ..--|.
T Consensus       201 -d~T~FiT~s~Dttakl~D~~tl~v~Kty~te-----~PvN~aaisP~~d~VilgGGq----------------eA~dVT  258 (327)
T KOG0643|consen  201 -DRTYFITGSKDTTAKLVDVRTLEVLKTYTTE-----RPVNTAAISPLLDHVILGGGQ----------------EAMDVT  258 (327)
T ss_pred             -CcceEEecccCccceeeeccceeeEEEeeec-----ccccceecccccceEEecCCc----------------eeeeee
Confidence             888888754432 455666543333222221     236777777752333331110                000111


Q ss_pred             EEeCCCCceE-------------EeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEcc
Q 019290          185 KYDPLKKNVT-------------VMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQ  231 (343)
Q Consensus       185 ~~d~~~~~~~-------------~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~  231 (343)
                      --+...|+++             ++...+...|.++++|+|+ .|.+.-.++-|.....+
T Consensus       259 TT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGk-sYsSGGEDG~VR~h~Fd  317 (327)
T KOG0643|consen  259 TTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGK-SYSSGGEDGYVRLHHFD  317 (327)
T ss_pred             eecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCc-ccccCCCCceEEEEEec
Confidence            1112222221             2334566789999999997 78887666766555443

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=97.02  E-value=0.025  Score=49.41  Aligned_cols=203  Identities=17%  Similarity=0.187  Sum_probs=115.2

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeE-EeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEe
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWT-EFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIAD  114 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~  114 (343)
                      ...++.+++|-..+-.+..+|.|-.|...++... .|..                   ........+.|+.++..++-+.
T Consensus       265 aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdr-------------------AHtkGvt~l~FSrD~SqiLS~s  325 (508)
T KOG0275|consen  265 AVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDR-------------------AHTKGVTCLSFSRDNSQILSAS  325 (508)
T ss_pred             ceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhh-------------------hhccCeeEEEEccCcchhhccc
Confidence            4668888888885667778888887776665422 2210                   1112356678887444566664


Q ss_pred             CCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceE
Q 019290          115 AYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVT  194 (343)
Q Consensus       115 ~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~  194 (343)
                      ...-+..-..++|+.-.-   ..+. ..++|...+.+ ||.-.++.++                 .+.|-.|+.++.+..
T Consensus       326 fD~tvRiHGlKSGK~LKE---frGH-sSyvn~a~ft~-dG~~iisaSs-----------------DgtvkvW~~KtteC~  383 (508)
T KOG0275|consen  326 FDQTVRIHGLKSGKCLKE---FRGH-SSYVNEATFTD-DGHHIISASS-----------------DGTVKVWHGKTTECL  383 (508)
T ss_pred             ccceEEEeccccchhHHH---hcCc-cccccceEEcC-CCCeEEEecC-----------------CccEEEecCcchhhh
Confidence            333455556676663221   1121 25788889998 6888887765                 566777776655432


Q ss_pred             -EeecCC--CCcceeEEec-CCCEEEEEEcCCCeEEEEEccCccccccceeeec--CC-CCCCceeeCCCCCEEEEeccC
Q 019290          195 -VMYNGL--SFPNGVALSN-NNSFLLLAESATLKILRFWLQGERTTYTPQLFAE--MP-RFPDNIKSDSKGEFWIAMNSA  267 (343)
Q Consensus       195 -~~~~~~--~~~~~i~~~~-d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~-~~p~~i~~d~~G~lwi~~~~~  267 (343)
                       ++....  ...+.+.+-| +.....|++ ..+.|+..++.|+    -.+.+..  .+ |..-+-++++.|....|-.. 
T Consensus       384 ~Tfk~~~~d~~vnsv~~~PKnpeh~iVCN-rsntv~imn~qGQ----vVrsfsSGkREgGdFi~~~lSpkGewiYcigE-  457 (508)
T KOG0275|consen  384 STFKPLGTDYPVNSVILLPKNPEHFIVCN-RSNTVYIMNMQGQ----VVRSFSSGKREGGDFINAILSPKGEWIYCIGE-  457 (508)
T ss_pred             hhccCCCCcccceeEEEcCCCCceEEEEc-CCCeEEEEeccce----EEeeeccCCccCCceEEEEecCCCcEEEEEcc-
Confidence             111111  1123333333 445566665 4678999888873    2233332  11 11112356888865444433 


Q ss_pred             CCccccccccccccccCCCcccCCCeEEEECC-CCCEEEEee
Q 019290          268 RGKIESNKKTAFCEETAKPWFLRDPVGVKFDV-NGNVVDVLD  308 (343)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~  308 (343)
                                             .+.+|||+. .|++...+.
T Consensus       458 -----------------------D~vlYCF~~~sG~LE~tl~  476 (508)
T KOG0275|consen  458 -----------------------DGVLYCFSVLSGKLERTLP  476 (508)
T ss_pred             -----------------------CcEEEEEEeecCceeeeee
Confidence                                   458899986 677655543

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=97.01  E-value=0.02  Score=51.59  Aligned_cols=156  Identities=10%  Similarity=0.081  Sum_probs=100.8

Q ss_pred             CCCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEe
Q 019290           35 VGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIAD  114 (343)
Q Consensus        35 ~~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~  114 (343)
                      .++.+-++-|||..+.++..++.++-+|.++.......                   .....+.+.+++.+++..++..+
T Consensus       313 ~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~-------------------gvr~~~v~dlait~Dgk~vl~v~  373 (519)
T KOG0293|consen  313 FSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWE-------------------GVRDPKVHDLAITYDGKYVLLVT  373 (519)
T ss_pred             CCcceeEEccCCceeEecCCCCcEEEecCCcchhhccc-------------------ccccceeEEEEEcCCCcEEEEEe
Confidence            46889999999999999999999999998774322110                   01122467899998566777775


Q ss_pred             CCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCce-
Q 019290          115 AYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNV-  193 (343)
Q Consensus       115 ~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~-  193 (343)
                      ....+..++.++..-..+....     ..+.++.+.. ||++.+.+..                 ...+..+|.+..+. 
T Consensus       374 ~d~~i~l~~~e~~~dr~lise~-----~~its~~iS~-d~k~~LvnL~-----------------~qei~LWDl~e~~lv  430 (519)
T KOG0293|consen  374 VDKKIRLYNREARVDRGLISEE-----QPITSFSISK-DGKLALVNLQ-----------------DQEIHLWDLEENKLV  430 (519)
T ss_pred             cccceeeechhhhhhhcccccc-----CceeEEEEcC-CCcEEEEEcc-----------------cCeeEEeecchhhHH
Confidence            5566888888754222122221     3477888998 6998887654                 44577777653322 


Q ss_pred             EEeecC--CCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290          194 TVMYNG--LSFPNGVALSNNNSFLLLAESATLKILRFWLQG  232 (343)
Q Consensus       194 ~~~~~~--~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~  232 (343)
                      +.+...  ....-..||.-....+..+.+.++.||.|+...
T Consensus       431 ~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~s  471 (519)
T KOG0293|consen  431 RKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRIS  471 (519)
T ss_pred             HHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccC
Confidence            111111  122345566543445777888899999998653

>PTZ00420 coronin; Provisional

Probab=96.99  E-value=0.11  Score=50.53  Aligned_cols=104  Identities=12%  Similarity=0.123  Sum_probs=63.7

Q ss_pred             cCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCc--e-------EEeecCCCCcceeEEecCC
Q 019290          142 RFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKN--V-------TVMYNGLSFPNGVALSNNN  212 (343)
Q Consensus       142 ~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~--~-------~~~~~~~~~~~~i~~~~d~  212 (343)
                      ..+.++++.+.++.+.++...                 .+.|..||..++.  .       ..+.........++++|++
T Consensus        75 ~~V~~lafsP~~~~lLASgS~-----------------DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g  137 (568)
T PTZ00420         75 SSILDLQFNPCFSEILASGSE-----------------DLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMN  137 (568)
T ss_pred             CCEEEEEEcCCCCCEEEEEeC-----------------CCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCC
Confidence            357888998832556554433                 4556666754321  1       1222233456789999998


Q ss_pred             CEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEecc
Q 019290          213 SFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNS  266 (343)
Q Consensus       213 ~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~~  266 (343)
                      ..++++...++.|..||+.....   ...+ ........+.++++|++++++..
T Consensus       138 ~~iLaSgS~DgtIrIWDl~tg~~---~~~i-~~~~~V~SlswspdG~lLat~s~  187 (568)
T PTZ00420        138 YYIMCSSGFDSFVNIWDIENEKR---AFQI-NMPKKLSSLKWNIKGNLLSGTCV  187 (568)
T ss_pred             CeEEEEEeCCCeEEEEECCCCcE---EEEE-ecCCcEEEEEECCCCCEEEEEec
Confidence            87766766789999999875321   1111 12223456778999998887654

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=96.99  E-value=0.28  Score=47.61  Aligned_cols=123  Identities=14%  Similarity=0.110  Sum_probs=64.0

Q ss_pred             CCeeEEEecCCEEEEEEcCCCCeE-EeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCCCeEEEEeC
Q 019290           46 GEGPYVGVSDGRILKWKAANSGWT-EFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFGLMVVGP  124 (343)
Q Consensus        46 g~~l~~~~~~g~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~~gi~~~d~  124 (343)
                      +..+|+....+.|+.+|..+++.. ++.......   .      ...........++++.  ++.+|+++....|+.+|.
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~---~------~~~~~~~~~~rg~av~--~~~v~v~t~dg~l~ALDa  137 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDD---V------IPVMCCDVVNRGVALY--DGKVFFGTLDARLVALDA  137 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcc---c------ccccccccccccceEE--CCEEEEEcCCCEEEEEEC
Confidence            344888878888999999886532 221100000   0      0000000012345565  578999865566999999


Q ss_pred             CCCeEEEcccccCCCC-ccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCce
Q 019290          125 NGGQAQQLASSAGGIP-FRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNV  193 (343)
Q Consensus       125 ~~~~~~~~~~~~~~~~-~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~  193 (343)
                      ++|+...-........ ......-.+.  ++.++++..+..+            ...+.|+.+|.++|+.
T Consensus       138 ~TGk~~W~~~~~~~~~~~~~tssP~v~--~g~Vivg~~~~~~------------~~~G~v~AlD~~TG~~  193 (527)
T TIGR03075       138 KTGKVVWSKKNGDYKAGYTITAAPLVV--KGKVITGISGGEF------------GVRGYVTAYDAKTGKL  193 (527)
T ss_pred             CCCCEEeecccccccccccccCCcEEE--CCEEEEeeccccc------------CCCcEEEEEECCCCce
Confidence            9998765432211100 0111122333  3788887543211            1135677777776664

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=96.97  E-value=0.097  Score=43.25  Aligned_cols=190  Identities=15%  Similarity=0.066  Sum_probs=99.0

Q ss_pred             ccccccccCCCCCCCceEEEcCCCCeeEEEe---cCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCee
Q 019290           23 SKSYQQLQLPGVVGPESLAFDCNGEGPYVGV---SDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPL   99 (343)
Q Consensus        23 ~~~~~~~~~~~~~~p~~l~~d~~g~~l~~~~---~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~   99 (343)
                      +..++.++......-.++.++.. . ++-++   ....|.++|..+++...-.                 ..++  ....
T Consensus        34 ~evi~~yphDs~sfTQGL~~~~g-~-i~esTG~yg~S~ir~~~L~~gq~~~s~-----------------~l~~--~~~F   92 (262)
T COG3823          34 YEVIRTYPHDSTSFTQGLEYLDG-H-ILESTGLYGFSKIRVSDLTTGQEIFSE-----------------KLAP--DTVF   92 (262)
T ss_pred             eEEEEeccCchhhhhcceeeeCC-E-EEEeccccccceeEEEeccCceEEEEe-----------------ecCC--cccc
Confidence            44556666654344567777644 4 55443   3457888888865432110                 1111  1122


Q ss_pred             eEEEeCCCCeEEEEeCCCe-EEEEeCCCCeEEEcccc-cCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeec
Q 019290          100 GIKFNPVTCDLYIADAYFG-LMVVGPNGGQAQQLASS-AGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATG  177 (343)
Q Consensus       100 gi~~~~~~~~l~v~~~~~g-i~~~d~~~~~~~~~~~~-~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~  177 (343)
                      |-.+..-++.+|.-++..| -+++|.++-  +.+-.. .++.    --+++-|.  .++|.++.+               
T Consensus        93 gEGit~~gd~~y~LTw~egvaf~~d~~t~--~~lg~~~y~Ge----GWgLt~d~--~~LimsdGs---------------  149 (262)
T COG3823          93 GEGITKLGDYFYQLTWKEGVAFKYDADTL--EELGRFSYEGE----GWGLTSDD--KNLIMSDGS---------------  149 (262)
T ss_pred             ccceeeccceEEEEEeccceeEEEChHHh--hhhcccccCCc----ceeeecCC--cceEeeCCc---------------
Confidence            2222332678898877777 578888752  222111 1111    23566665  468887754               


Q ss_pred             CCCceEEEEeCCCCc----eEEeecC--CCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecC------
Q 019290          178 DRSGRLLKYDPLKKN----VTVMYNG--LSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEM------  245 (343)
Q Consensus       178 ~~~~~v~~~d~~~~~----~~~~~~~--~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~------  245 (343)
                         ..+...||++-.    +.+-..+  ....|.+.+- || .+|..-....+|.|++++.    ++.....+.      
T Consensus       150 ---atL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG-~lyANVw~t~~I~rI~p~s----GrV~~widlS~L~~~  220 (262)
T COG3823         150 ---ATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DG-ELYANVWQTTRIARIDPDS----GRVVAWIDLSGLLKE  220 (262)
T ss_pred             ---eEEEecCHHHhhhcceEEEEECCeecccccceeee-cc-EEEEeeeeecceEEEcCCC----CcEEEEEEccCCchh
Confidence               346666665321    1111111  1233444442 44 3676666677888888775    222222211      


Q ss_pred             -------CCCCCceeeCCCC-CEEEEec
Q 019290          246 -------PRFPDNIKSDSKG-EFWIAMN  265 (343)
Q Consensus       246 -------~~~p~~i~~d~~G-~lwi~~~  265 (343)
                             ...++||+.|+++ +++++.-
T Consensus       221 ~~~~~~~~nvlNGIA~~~~~~r~~iTGK  248 (262)
T COG3823         221 LNLDKSNDNVLNGIAHDPQQDRFLITGK  248 (262)
T ss_pred             cCccccccccccceeecCcCCeEEEecC
Confidence                   1246788888875 7888753

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=96.96  E-value=0.024  Score=55.38  Aligned_cols=152  Identities=18%  Similarity=0.086  Sum_probs=101.6

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      ...+++.|.-++.+.++..+|-+..||.+++.+..=.                    .....+.++..+...+-+-++..
T Consensus       495 ~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l--------------------~l~~~~~~iv~hr~s~l~a~~~d  554 (910)
T KOG1539|consen  495 EVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSL--------------------RLGSSITGIVYHRVSDLLAIALD  554 (910)
T ss_pred             ceeEEEecCCCceEEEccCcceEEEEecCCcceeeee--------------------ccCCCcceeeeeehhhhhhhhcC
Confidence            4679999999997888888888888888775422100                    11223456777763444444444


Q ss_pred             CCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEE
Q 019290          116 YFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTV  195 (343)
Q Consensus       116 ~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~  195 (343)
                      ...|..+|..|.++.+.....    .+.++++.+.+ ||+=.++..-                 .+.|..||..++....
T Consensus       555 df~I~vvD~~t~kvvR~f~gh----~nritd~~FS~-DgrWlisasm-----------------D~tIr~wDlpt~~lID  612 (910)
T KOG1539|consen  555 DFSIRVVDVVTRKVVREFWGH----GNRITDMTFSP-DGRWLISASM-----------------DSTIRTWDLPTGTLID  612 (910)
T ss_pred             ceeEEEEEchhhhhhHHhhcc----ccceeeeEeCC-CCcEEEEeec-----------------CCcEEEEeccCcceee
Confidence            567999999887765543322    25689999999 5774343321                 4568889988776543


Q ss_pred             eecCCCCcceeEEecCCCEEEEEEcCCCeEEEEE
Q 019290          196 MYNGLSFPNGVALSNNNSFLLLAESATLKILRFW  229 (343)
Q Consensus       196 ~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~  229 (343)
                      ...--.....+.++|+|..|-.+.....+||.|.
T Consensus       613 ~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWs  646 (910)
T KOG1539|consen  613 GLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWS  646 (910)
T ss_pred             eEecCCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence            2222234567889999999888888778999886

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=96.95  E-value=0.2  Score=42.75  Aligned_cols=184  Identities=14%  Similarity=0.180  Sum_probs=103.3

Q ss_pred             CCCCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEE
Q 019290           34 VVGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIA  113 (343)
Q Consensus        34 ~~~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~  113 (343)
                      ....+++++..+|..+-.+..+..+..++.....+..   ...++              .....+..++.++....++.+
T Consensus        20 ~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~---~~~~~--------------gh~~svdql~w~~~~~d~~at   82 (313)
T KOG1407|consen   20 VQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRK---ELVYR--------------GHTDSVDQLCWDPKHPDLFAT   82 (313)
T ss_pred             hhcceEEEEcccCceeeecccCCceEEEEecchhhhh---hhccc--------------CCCcchhhheeCCCCCcceEE
Confidence            3468999999999988888888887777765432211   00000              011122345555534445544


Q ss_pred             eCC-CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCc
Q 019290          114 DAY-FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKN  192 (343)
Q Consensus       114 ~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~  192 (343)
                      ..+ ..+.++|.++++-........+     =.-+...|.++.+.+++.                  ...|..+|..+.+
T Consensus        83 as~dk~ir~wd~r~~k~~~~i~~~~e-----ni~i~wsp~g~~~~~~~k------------------dD~it~id~r~~~  139 (313)
T KOG1407|consen   83 ASGDKTIRIWDIRSGKCTARIETKGE-----NINITWSPDGEYIAVGNK------------------DDRITFIDARTYK  139 (313)
T ss_pred             ecCCceEEEEEeccCcEEEEeeccCc-----ceEEEEcCCCCEEEEecC------------------cccEEEEEecccc
Confidence            333 4488999887764432221111     123556664344444332                  4567777765444


Q ss_pred             eEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCc---eeeCCCCCEEEEe
Q 019290          193 VTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDN---IKSDSKGEFWIAM  264 (343)
Q Consensus       193 ~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~---i~~d~~G~lwi~~  264 (343)
                      ...-.+-....+.+++..++ .+++..+..|+|..+....      .+.+..+..+|.+   +.+||+|+.+...
T Consensus       140 ~~~~~~~~~e~ne~~w~~~n-d~Fflt~GlG~v~ILsyps------Lkpv~si~AH~snCicI~f~p~GryfA~G  207 (313)
T KOG1407|consen  140 IVNEEQFKFEVNEISWNNSN-DLFFLTNGLGCVEILSYPS------LKPVQSIKAHPSNCICIEFDPDGRYFATG  207 (313)
T ss_pred             eeehhcccceeeeeeecCCC-CEEEEecCCceEEEEeccc------cccccccccCCcceEEEEECCCCceEeec
Confidence            33222223446778887554 4777777778988877532      2333334445544   5679999766554

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=96.95  E-value=0.24  Score=43.43  Aligned_cols=173  Identities=17%  Similarity=0.144  Sum_probs=95.0

Q ss_pred             CCCeeEEEecCCEEEEEEcCCC-CeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCC--CeEEEEeCCCe-EE
Q 019290           45 NGEGPYVGVSDGRILKWKAANS-GWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVT--CDLYIADAYFG-LM  120 (343)
Q Consensus        45 ~g~~l~~~~~~g~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~--~~l~v~~~~~g-i~  120 (343)
                      +|..+..+..+..|..||..+. +...+.                    ...+..+.+.|...-  ..|.-+ ..+| |.
T Consensus        52 s~~~~aSGssDetI~IYDm~k~~qlg~ll--------------------~HagsitaL~F~~~~S~shLlS~-sdDG~i~  110 (362)
T KOG0294|consen   52 SGPYVASGSSDETIHIYDMRKRKQLGILL--------------------SHAGSITALKFYPPLSKSHLLSG-SDDGHII  110 (362)
T ss_pred             cceeEeccCCCCcEEEEeccchhhhccee--------------------ccccceEEEEecCCcchhheeee-cCCCcEE
Confidence            4554456677889999998653 222111                    122345566666521  256666 4566 66


Q ss_pred             EEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEeecCC
Q 019290          121 VVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGL  200 (343)
Q Consensus       121 ~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~  200 (343)
                      .++..  .+..+- ...... ..++++++.|. |+|-++...                 .+.+..+|.-.|+......-.
T Consensus       111 iw~~~--~W~~~~-slK~H~-~~Vt~lsiHPS-~KLALsVg~-----------------D~~lr~WNLV~Gr~a~v~~L~  168 (362)
T KOG0294|consen  111 IWRVG--SWELLK-SLKAHK-GQVTDLSIHPS-GKLALSVGG-----------------DQVLRTWNLVRGRVAFVLNLK  168 (362)
T ss_pred             EEEcC--CeEEee-eecccc-cccceeEecCC-CceEEEEcC-----------------CceeeeehhhcCccceeeccC
Confidence            66654  344332 211212 34899999995 999887654                 334555565444433222222


Q ss_pred             CCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEecc
Q 019290          201 SFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNS  266 (343)
Q Consensus       201 ~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~~  266 (343)
                      ..+.-+.+++.|.+.++..  .++|-.|.++....+.+    ...+-.+-.+.++..+.+.++..+
T Consensus       169 ~~at~v~w~~~Gd~F~v~~--~~~i~i~q~d~A~v~~~----i~~~~r~l~~~~l~~~~L~vG~d~  228 (362)
T KOG0294|consen  169 NKATLVSWSPQGDHFVVSG--RNKIDIYQLDNASVFRE----IENPKRILCATFLDGSELLVGGDN  228 (362)
T ss_pred             CcceeeEEcCCCCEEEEEe--ccEEEEEecccHhHhhh----hhccccceeeeecCCceEEEecCC
Confidence            3345578889998777765  46787787654221111    112222444555666777777544

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.90  E-value=0.04  Score=47.62  Aligned_cols=81  Identities=11%  Similarity=0.078  Sum_probs=44.3

Q ss_pred             CccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEeec------CC-CCcceeEEecCC
Q 019290          140 PFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYN------GL-SFPNGVALSNNN  212 (343)
Q Consensus       140 ~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~------~~-~~~~~i~~~~d~  212 (343)
                      ...++..+++++ ||++|++.+..  +.         .+...-+.-.-..++.++.+.-      .+ ...-.|++..+.
T Consensus       224 ~~lSiRHld~g~-dgtvwfgcQy~--G~---------~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~  291 (366)
T COG3490         224 RQLSIRHLDIGR-DGTVWFGCQYR--GP---------RNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRD  291 (366)
T ss_pred             hhcceeeeeeCC-CCcEEEEEEee--CC---------CccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccC
Confidence            346678899999 69999987541  00         0000012222222222222110      01 123457777666


Q ss_pred             CEEEEEEcCCCeEEEEEccC
Q 019290          213 SFLLLAESATLKILRFWLQG  232 (343)
Q Consensus       213 ~~lyv~~~~~~~i~~~~~~~  232 (343)
                      +.+-++...+++...||.++
T Consensus       292 glV~lTSP~GN~~vi~da~t  311 (366)
T COG3490         292 GLVALTSPRGNRAVIWDAAT  311 (366)
T ss_pred             CeEEEecCCCCeEEEEEcCC
Confidence            66666777788888999776

>COG3211 PhoX Predicted phosphatase [General function prediction only]

Probab=96.87  E-value=0.014  Score=54.97  Aligned_cols=120  Identities=20%  Similarity=0.248  Sum_probs=73.5

Q ss_pred             cCCeeeEEEeCCCCeEEEEeCCC-----------------eEEEEeCCCC-------eEEEcccccCC------------
Q 019290           95 CGRPLGIKFNPVTCDLYIADAYF-----------------GLMVVGPNGG-------QAQQLASSAGG------------  138 (343)
Q Consensus        95 ~~~p~gi~~~~~~~~l~v~~~~~-----------------gi~~~d~~~~-------~~~~~~~~~~~------------  138 (343)
                      ..+|.++++.+..+.+|++.+.+                 +|+++-+.++       ++..+......            
T Consensus       416 mdRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~~~~~  495 (616)
T COG3211         416 MDRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGASANIN  495 (616)
T ss_pred             ccCccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCccccccccccCcc
Confidence            44789999999778899985432                 3888877655       44443321111            


Q ss_pred             -CCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEeecCC--CCcceeEEecCCCEE
Q 019290          139 -IPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGL--SFPNGVALSNNNSFL  215 (343)
Q Consensus       139 -~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~--~~~~~i~~~~d~~~l  215 (343)
                       .-+..|..|++|+. |+||+.+..+.-...+..    .+  -..+..=++.+++++++....  ....|.+|+||++++
T Consensus       496 ~~~f~~PDnl~fD~~-GrLWi~TDg~~s~~~~~~----~G--~~~m~~~~p~~g~~~rf~t~P~g~E~tG~~FspD~~Tl  568 (616)
T COG3211         496 ANWFNSPDNLAFDPW-GRLWIQTDGSGSTLRNRF----RG--VTQMLTPDPKTGTIKRFLTGPIGCEFTGPCFSPDGKTL  568 (616)
T ss_pred             cccccCCCceEECCC-CCEEEEecCCCCccCccc----cc--ccccccCCCccceeeeeccCCCcceeecceeCCCCceE
Confidence             11455889999994 999998765321110000    00  012223355666676665443  356899999999999


Q ss_pred             EEEEcC
Q 019290          216 LLAESA  221 (343)
Q Consensus       216 yv~~~~  221 (343)
                      +|.-..
T Consensus       569 FV~vQH  574 (616)
T COG3211         569 FVNVQH  574 (616)
T ss_pred             EEEecC
Confidence            987543

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=96.86  E-value=0.28  Score=43.06  Aligned_cols=247  Identities=15%  Similarity=0.155  Sum_probs=128.4

Q ss_pred             cccccCCCCCCCceEEEcCCCCeeEE-EecCCEEEEEEcC--C----CCeEEeeecCCCccccccCCCCCcccCCCcCCe
Q 019290           26 YQQLQLPGVVGPESLAFDCNGEGPYV-GVSDGRILKWKAA--N----SGWTEFATTAPHRAREICDGSTNTTLEPLCGRP   98 (343)
Q Consensus        26 ~~~~~~~~~~~p~~l~~d~~g~~l~~-~~~~g~i~~~d~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p   98 (343)
                      ..+...|.+.+|.+|++.+.+. +|+ +...+..-.||.+  +    ..-..+.......             ....+.|
T Consensus        14 ~A~~tDp~L~N~WGia~~p~~~-~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~-------------~~~~~~P   79 (336)
T TIGR03118        14 AAQIVDPGLRNAWGLSYRPGGP-FWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPP-------------LAAEGTP   79 (336)
T ss_pred             cccccCccccccceeEecCCCC-EEEecCCcceEEeecCCcccccCCccceEEEecCCCC-------------CCCCCCc
Confidence            4566778888999999999998 665 4455555666664  1    1111222111000             0123468


Q ss_pred             eeEEEeCCCCeEEEEeCC---CeEEEEeCCCCeEEEccccc-------------CCCCccCcceeEEeCC--CCeEEEEe
Q 019290           99 LGIKFNPVTCDLYIADAY---FGLMVVGPNGGQAQQLASSA-------------GGIPFRFTNDLDIDPN--TGIVYFTD  160 (343)
Q Consensus        99 ~gi~~~~~~~~l~v~~~~---~gi~~~d~~~~~~~~~~~~~-------------~~~~~~~~~~i~~d~~--dg~l~v~~  160 (343)
                      .|+.+.. ....-|....   ...+.+-.+.|.+.-+....             .+.....-.++++-..  .+.||.++
T Consensus        80 TGiVfN~-~~~F~vt~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaad  158 (336)
T TIGR03118        80 TGQVFNG-SDTFVVSGEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAAN  158 (336)
T ss_pred             cEEEEeC-CCceEEcCCCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEec
Confidence            8888885 3333232111   12345555666555443211             0111122234554421  25677766


Q ss_pred             CCcccccccceeeeeecCCCceEEEEeCCCCceEEeec--------CCCCcceeEEecCCCEEEEEEcC-----------
Q 019290          161 SSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYN--------GLSFPNGVALSNNNSFLLLAESA-----------  221 (343)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~--------~~~~~~~i~~~~d~~~lyv~~~~-----------  221 (343)
                      -.                 .++|-.||..=..+. +..        ....|..|.--  +..|||+-..           
T Consensus       159 F~-----------------~g~IDVFd~~f~~~~-~~g~F~DP~iPagyAPFnIqni--g~~lyVtYA~qd~~~~d~v~G  218 (336)
T TIGR03118       159 FR-----------------QGRIDVFKGSFRPPP-LPGSFIDPALPAGYAPFNVQNL--GGTLYVTYAQQDADRNDEVAG  218 (336)
T ss_pred             cC-----------------CCceEEecCcccccc-CCCCccCCCCCCCCCCcceEEE--CCeEEEEEEecCCcccccccC
Confidence            54                 456666663211111 111        11224444332  4568886432           


Q ss_pred             --CCeEEEEEccCccccccceeeec---CCCCCCceeeCC------CCCEEEEeccCCCccccccccccccccCCCcccC
Q 019290          222 --TLKILRFWLQGERTTYTPQLFAE---MPRFPDNIKSDS------KGEFWIAMNSARGKIESNKKTAFCEETAKPWFLR  290 (343)
Q Consensus       222 --~~~i~~~~~~~~~~~~~~~~~~~---~~~~p~~i~~d~------~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (343)
                        .+-|-+|++++.-    .+.+..   ++ .|=+|++.|      .|.|.|+...                        
T Consensus       219 ~G~G~VdvFd~~G~l----~~r~as~g~LN-aPWG~a~APa~FG~~sg~lLVGNFG------------------------  269 (336)
T TIGR03118       219 AGLGYVNVFTLNGQL----LRRVASSGRLN-APWGLAIAPESFGSLSGALLVGNFG------------------------  269 (336)
T ss_pred             CCcceEEEEcCCCcE----EEEeccCCccc-CCceeeeChhhhCCCCCCeEEeecC------------------------
Confidence              2456667766632    233332   22 377777633      5779999877                        


Q ss_pred             CCeEEEECC-CCCEEEEeeCCCCCccC--CceeEEE-------eCCEEEEecCCCC
Q 019290          291 DPVGVKFDV-NGNVVDVLDGNEGNTLN--SVSEVQE-------YGEYLYTGSSVQP  336 (343)
Q Consensus       291 ~~~v~~~d~-~g~~~~~~~~~~~~~~~--~~~~~~~-------~~g~l~i~~~~~~  336 (343)
                      .+.|..||+ .|+.+..+..+++....  ....+..       ..+.||++.-..+
T Consensus       270 DG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGng~~~~~~ntLyFaAGp~d  325 (336)
T TIGR03118       270 DGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGNGVSGGSANYLYFTAGPDD  325 (336)
T ss_pred             CceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCCCcCCCCcceEEEEeCCCC
Confidence            568899998 48888887766663222  1122221       1357888766544

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=96.86  E-value=0.077  Score=52.56  Aligned_cols=156  Identities=15%  Similarity=0.158  Sum_probs=93.8

Q ss_pred             ceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCCC
Q 019290           38 ESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYF  117 (343)
Q Consensus        38 ~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~~  117 (343)
                      .+++++-+|+.+-++..+-.|-.++..+.......                   ....+.+.++.+++ ++.++.....+
T Consensus       100 r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~l-------------------rgh~apVl~l~~~p-~~~fLAvss~d  159 (933)
T KOG1274|consen  100 RDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVL-------------------RGHDAPVLQLSYDP-KGNFLAVSSCD  159 (933)
T ss_pred             eEEEEecCCcEEEeecCceeEEEEeccccchheee-------------------cccCCceeeeeEcC-CCCEEEEEecC
Confidence            68899999995566666766777666543322221                   12334467899999 66655554567


Q ss_pred             e-EEEEeCCCCeEEEcccccC----CCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCc
Q 019290          118 G-LMVVGPNGGQAQQLASSAG----GIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKN  192 (343)
Q Consensus       118 g-i~~~d~~~~~~~~~~~~~~----~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~  192 (343)
                      | |..++++++..........    ......+..++..|+.|.+.+.-.                  .+.|-.|++++.+
T Consensus       160 G~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~------------------d~~Vkvy~r~~we  221 (933)
T KOG1274|consen  160 GKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPV------------------DNTVKVYSRKGWE  221 (933)
T ss_pred             ceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeecc------------------CCeEEEEccCCce
Confidence            7 8899998876543322111    111234566788884345444221                  3457777766443


Q ss_pred             eE-EeecCC--CCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290          193 VT-VMYNGL--SFPNGVALSNNNSFLLLAESATLKILRFWLQG  232 (343)
Q Consensus       193 ~~-~~~~~~--~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~  232 (343)
                      .. .+..+.  +....+.++|.|.+| .+.+.++.|.+|+.+.
T Consensus       222 ~~f~Lr~~~~ss~~~~~~wsPnG~Yi-AAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  222 LQFKLRDKLSSSKFSDLQWSPNGKYI-AASTLDGQILVWNVDT  263 (933)
T ss_pred             eheeecccccccceEEEEEcCCCcEE-eeeccCCcEEEEeccc
Confidence            32 121221  236788899998754 4556789999999874

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=96.83  E-value=0.36  Score=45.37  Aligned_cols=135  Identities=16%  Similarity=0.142  Sum_probs=74.6

Q ss_pred             EEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCCCe---EEEEeCCCCeEEEcc
Q 019290           57 RILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFG---LMVVGPNGGQAQQLA  133 (343)
Q Consensus        57 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~~g---i~~~d~~~~~~~~~~  133 (343)
                      +++.++.+++....+....                    +......+.+++..|.++...+|   ||.+|..++....+.
T Consensus       219 ~i~~~~l~~g~~~~i~~~~--------------------g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt  278 (425)
T COG0823         219 RIYYLDLNTGKRPVILNFN--------------------GNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLT  278 (425)
T ss_pred             eEEEEeccCCccceeeccC--------------------CccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcceecc
Confidence            5888888776554443211                    11122345664556666544444   999999887755532


Q ss_pred             cccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEeecCCCCcceeEEecCCC
Q 019290          134 SSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNS  213 (343)
Q Consensus       134 ~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~i~~~~d~~  213 (343)
                      .. .+  ...--  .+.|++..++++...               .+.-.||+++.+++..+++.........-.+++||+
T Consensus       279 ~~-~g--i~~~P--s~spdG~~ivf~Sdr---------------~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~  338 (425)
T COG0823         279 NG-FG--INTSP--SWSPDGSKIVFTSDR---------------GGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGD  338 (425)
T ss_pred             cC-Cc--cccCc--cCCCCCCEEEEEeCC---------------CCCcceEEECCCCCceeEeeccCCCCcCccCCCCCC
Confidence            21 11  11111  233421345554322               123479999999888777665544444556789999


Q ss_pred             EEEEEEcCCCe--EEEEEcc
Q 019290          214 FLLLAESATLK--ILRFWLQ  231 (343)
Q Consensus       214 ~lyv~~~~~~~--i~~~~~~  231 (343)
                      .+.+.....+.  |..+++.
T Consensus       339 ~i~~~~~~~g~~~i~~~~~~  358 (425)
T COG0823         339 KIVFESSSGGQWDIDKNDLA  358 (425)
T ss_pred             EEEEEeccCCceeeEEeccC
Confidence            87776644444  5555544

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=96.83  E-value=0.16  Score=46.03  Aligned_cols=186  Identities=18%  Similarity=0.206  Sum_probs=95.9

Q ss_pred             CCceEEEcCCCCeeEEEecCCE------EEEEEcCC--CCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCC
Q 019290           36 GPESLAFDCNGEGPYVGVSDGR------ILKWKAAN--SGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVT  107 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~------i~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~  107 (343)
                      .-.+|++++++..+|+-+.++.      +|.+....  +....+......   .+.+.. +........-+.+|++.+ +
T Consensus        21 GlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~L~~~~-G~~~~~~~~D~Egi~~~~-~   95 (326)
T PF13449_consen   21 GLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMI---PLRDPD-GQPFPKNGLDPEGIAVPP-D   95 (326)
T ss_pred             cEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccce---eccCCC-CCcCCcCCCChhHeEEec-C
Confidence            4578999976565887667666      77665432  111111100000   000000 000001111356899965 8


Q ss_pred             CeEEEEeCCC-------eEEEEeCCCCeE-EEc--ccc--------cCCCCccCcceeEEeCCCCe-EEEEeCCcccccc
Q 019290          108 CDLYIADAYF-------GLMVVGPNGGQA-QQL--ASS--------AGGIPFRFTNDLDIDPNTGI-VYFTDSSIYFQRR  168 (343)
Q Consensus       108 ~~l~v~~~~~-------gi~~~d~~~~~~-~~~--~~~--------~~~~~~~~~~~i~~d~~dg~-l~v~~~~~~~~~~  168 (343)
                      +.+||++.+.       .|++++.+ |++ +.+  ...        ........+-++++.+ ||+ ||++..+...+  
T Consensus        96 g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~-dG~~l~~~~E~~l~~--  171 (326)
T PF13449_consen   96 GSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSP-DGRTLFAAMESPLKQ--  171 (326)
T ss_pred             CCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECC-CCCEEEEEECccccC--
Confidence            9999997655       49999988 544 333  111        1112345678999999 577 88876542110  


Q ss_pred             cceeeeeecCCCceEEEEeCCC-Cc-eEEee---c------CCCCcceeEEecCCCEEEEEEcC-------CCeEEEEEc
Q 019290          169 QYFMSIATGDRSGRLLKYDPLK-KN-VTVMY---N------GLSFPNGVALSNNNSFLLLAESA-------TLKILRFWL  230 (343)
Q Consensus       169 ~~~~~~~~~~~~~~v~~~d~~~-~~-~~~~~---~------~~~~~~~i~~~~d~~~lyv~~~~-------~~~i~~~~~  230 (343)
                      +-...-.......++++||+.+ +. ...+.   .      ....+..++..++++ +++.+..       ..+|+++++
T Consensus       172 d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~-lLvLER~~~~~~~~~~ri~~v~l  250 (326)
T PF13449_consen  172 DGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGR-LLVLERDFSPGTGNYKRIYRVDL  250 (326)
T ss_pred             CCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCc-EEEEEccCCCCccceEEEEEEEc
Confidence            0000000011125688898865 21 22211   1      233455666667776 6776654       356666665


Q ss_pred             c
Q 019290          231 Q  231 (343)
Q Consensus       231 ~  231 (343)
                      .
T Consensus       251 ~  251 (326)
T PF13449_consen  251 S  251 (326)
T ss_pred             c
Confidence            4

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=96.79  E-value=0.23  Score=48.62  Aligned_cols=181  Identities=13%  Similarity=0.112  Sum_probs=107.9

Q ss_pred             ceEEEcCCCCeeEEEecCCEEEEEEcCCCCe-EEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCC
Q 019290           38 ESLAFDCNGEGPYVGVSDGRILKWKAANSGW-TEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAY  116 (343)
Q Consensus        38 ~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~  116 (343)
                      -+|.+..++. |..+..+..+-.|++..++. ..|.                     ....+..++|+|.+++.+++..-
T Consensus       373 LDlSWSKn~f-LLSSSMDKTVRLWh~~~~~CL~~F~---------------------HndfVTcVaFnPvDDryFiSGSL  430 (712)
T KOG0283|consen  373 LDLSWSKNNF-LLSSSMDKTVRLWHPGRKECLKVFS---------------------HNDFVTCVAFNPVDDRYFISGSL  430 (712)
T ss_pred             eecccccCCe-eEeccccccEEeecCCCcceeeEEe---------------------cCCeeEEEEecccCCCcEeeccc
Confidence            3556666666 77788888888888876553 3332                     22356789999988888887665


Q ss_pred             Ce-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEE-EeCCcccccccceeeeeecCCCceEEEEeCCCCceE
Q 019290          117 FG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYF-TDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVT  194 (343)
Q Consensus       117 ~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v-~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~  194 (343)
                      +| +..++....++..+....     ..+..+++.| ||...| +..                  .|....|+..+.++.
T Consensus       431 D~KvRiWsI~d~~Vv~W~Dl~-----~lITAvcy~P-dGk~avIGt~------------------~G~C~fY~t~~lk~~  486 (712)
T KOG0283|consen  431 DGKVRLWSISDKKVVDWNDLR-----DLITAVCYSP-DGKGAVIGTF------------------NGYCRFYDTEGLKLV  486 (712)
T ss_pred             ccceEEeecCcCeeEeehhhh-----hhheeEEecc-CCceEEEEEe------------------ccEEEEEEccCCeEE
Confidence            66 888888777777665432     3578889999 476444 332                  445556665544432


Q ss_pred             E---e--ec----CCCCcceeEEecCC-CEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEe
Q 019290          195 V---M--YN----GLSFPNGVALSNNN-SFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAM  264 (343)
Q Consensus       195 ~---~--~~----~~~~~~~i~~~~d~-~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~  264 (343)
                      .   +  ..    ......|+.+.|.. ..+.|+ +++.+|..||......+..++-+..... ...-.+..||+-.|+.
T Consensus       487 ~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVT-SnDSrIRI~d~~~~~lv~KfKG~~n~~S-Q~~Asfs~Dgk~IVs~  564 (712)
T KOG0283|consen  487 SDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVT-SNDSRIRIYDGRDKDLVHKFKGFRNTSS-QISASFSSDGKHIVSA  564 (712)
T ss_pred             EeeeEeeccCccccCceeeeeEecCCCCCeEEEe-cCCCceEEEeccchhhhhhhcccccCCc-ceeeeEccCCCEEEEe
Confidence            1   0  10    01246777776432 246666 4678999999643222122222222111 1122356688777776


Q ss_pred             cc
Q 019290          265 NS  266 (343)
Q Consensus       265 ~~  266 (343)
                      ..
T Consensus       565 se  566 (712)
T KOG0283|consen  565 SE  566 (712)
T ss_pred             ec
Confidence            65

>PHA03098 kelch-like protein; Provisional

Probab=96.78  E-value=0.32  Score=47.37  Aligned_cols=189  Identities=4%  Similarity=-0.022  Sum_probs=96.4

Q ss_pred             EEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCC------CeEEEEeCCCCeEE
Q 019290           57 RILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAY------FGLMVVGPNGGQAQ  130 (343)
Q Consensus        57 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~------~gi~~~d~~~~~~~  130 (343)
                      .++.||+.+..|......+                 .. ..-++++..  ++.||+....      +.+.+||+.+.+++
T Consensus       312 ~v~~yd~~~~~W~~~~~~~-----------------~~-R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~  371 (534)
T PHA03098        312 SVVSYDTKTKSWNKVPELI-----------------YP-RKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESKWR  371 (534)
T ss_pred             cEEEEeCCCCeeeECCCCC-----------------cc-cccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence            5889999998887653211                 00 111344444  5778876332      23788999988887


Q ss_pred             EcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEeecCCCCc--ceeEE
Q 019290          131 QLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSFP--NGVAL  208 (343)
Q Consensus       131 ~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~--~~i~~  208 (343)
                      .........   .-..++.-  +|.+|+......           .......+++||+.+++++.........  ...+.
T Consensus       372 ~~~~lp~~r---~~~~~~~~--~~~iYv~GG~~~-----------~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~  435 (534)
T PHA03098        372 EEPPLIFPR---YNPCVVNV--NNLIYVIGGISK-----------NDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIY  435 (534)
T ss_pred             eCCCcCcCC---ccceEEEE--CCEEEEECCcCC-----------CCcccceEEEEeCCCCeeeecCCCCccccCceEEE
Confidence            765433221   11223333  379998533100           0011246899999888776543211111  12222


Q ss_pred             ecCCCEEEEEEcC--------CCeEEEEEccCccccccceeeecCC--CCCCceeeCCCCCEEEEeccCCCccccccccc
Q 019290          209 SNNNSFLLLAESA--------TLKILRFWLQGERTTYTPQLFAEMP--RFPDNIKSDSKGEFWIAMNSARGKIESNKKTA  278 (343)
Q Consensus       209 ~~d~~~lyv~~~~--------~~~i~~~~~~~~~~~~~~~~~~~~~--~~p~~i~~d~~G~lwi~~~~~~~~~~~~~~~~  278 (343)
                       . ++.+|+..-.        -..+++||+..    .+...+...+  ....+++. -+|+||+.........       
T Consensus       436 -~-~~~iyv~GG~~~~~~~~~~~~v~~yd~~~----~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~-------  501 (534)
T PHA03098        436 -H-DGKIYVIGGISYIDNIKVYNIVESYNPVT----NKWTELSSLNFPRINASLCI-FNNKIYVVGGDKYEYY-------  501 (534)
T ss_pred             -E-CCEEEEECCccCCCCCcccceEEEecCCC----CceeeCCCCCcccccceEEE-ECCEEEEEcCCcCCcc-------
Confidence             2 3457876421        12388888765    2222222211  11112222 2678888754311111       


Q ss_pred             cccccCCCcccCCCeEEEECCCCCEEEEe
Q 019290          279 FCEETAKPWFLRDPVGVKFDVNGNVVDVL  307 (343)
Q Consensus       279 ~~~~~~~~~~~~~~~v~~~d~~g~~~~~~  307 (343)
                                  ...+.+||++.+.=..+
T Consensus       502 ------------~~~v~~yd~~~~~W~~~  518 (534)
T PHA03098        502 ------------INEIEVYDDKTNTWTLF  518 (534)
T ss_pred             ------------cceeEEEeCCCCEEEec
Confidence                        23688899876543333

>PHA02790 Kelch-like protein; Provisional

Probab=96.74  E-value=0.46  Score=45.59  Aligned_cols=160  Identities=7%  Similarity=-0.044  Sum_probs=86.8

Q ss_pred             EEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCC---CeEEEEeCCCCeEEEcc
Q 019290           57 RILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAY---FGLMVVGPNGGQAQQLA  133 (343)
Q Consensus        57 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~---~gi~~~d~~~~~~~~~~  133 (343)
                      .+++||+.+..|..++...                 .. ..-.+.+..  ++.||+....   ..+.++|+.++++..++
T Consensus       288 ~v~~Ydp~~~~W~~~~~m~-----------------~~-r~~~~~v~~--~~~iYviGG~~~~~sve~ydp~~n~W~~~~  347 (480)
T PHA02790        288 NAIAVNYISNNWIPIPPMN-----------------SP-RLYASGVPA--NNKLYVVGGLPNPTSVERWFHGDAAWVNMP  347 (480)
T ss_pred             eEEEEECCCCEEEECCCCC-----------------ch-hhcceEEEE--CCEEEEECCcCCCCceEEEECCCCeEEECC
Confidence            5889999988887764211                 00 011233333  6789987432   23889999888887765


Q ss_pred             cccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEeecCCCCc---ceeEEec
Q 019290          134 SSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSFP---NGVALSN  210 (343)
Q Consensus       134 ~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~---~~i~~~~  210 (343)
                      ......   .-..++.-  +|.||+.-...             .. ...+.+||+.+.+++.... ...+   .+.+. -
T Consensus       348 ~l~~~r---~~~~~~~~--~g~IYviGG~~-------------~~-~~~ve~ydp~~~~W~~~~~-m~~~r~~~~~~~-~  406 (480)
T PHA02790        348 SLLKPR---CNPAVASI--NNVIYVIGGHS-------------ET-DTTTEYLLPNHDQWQFGPS-TYYPHYKSCALV-F  406 (480)
T ss_pred             CCCCCC---cccEEEEE--CCEEEEecCcC-------------CC-CccEEEEeCCCCEEEeCCC-CCCccccceEEE-E
Confidence            543221   11233333  48999854320             01 2357889998888765432 2222   12222 2


Q ss_pred             CCCEEEEEEcCCCeEEEEEccCccccccceeeecCCC--CCCceeeCCCCCEEEEecc
Q 019290          211 NNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPR--FPDNIKSDSKGEFWIAMNS  266 (343)
Q Consensus       211 d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~p~~i~~d~~G~lwi~~~~  266 (343)
                       ++.+|+..   +...+|++..    .....+...+.  .-.++++ -+|+||+....
T Consensus       407 -~~~IYv~G---G~~e~ydp~~----~~W~~~~~m~~~r~~~~~~v-~~~~IYviGG~  455 (480)
T PHA02790        407 -GRRLFLVG---RNAEFYCESS----NTWTLIDDPIYPRDNPELII-VDNKLLLIGGF  455 (480)
T ss_pred             -CCEEEEEC---CceEEecCCC----CcEeEcCCCCCCccccEEEE-ECCEEEEECCc
Confidence             34688874   4577888764    33333332221  1112332 26789988643

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=96.67  E-value=0.13  Score=47.87  Aligned_cols=228  Identities=11%  Similarity=0.070  Sum_probs=124.6

Q ss_pred             CceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCe--eeEEEeCCCCeEEEEe
Q 019290           37 PESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRP--LGIKFNPVTCDLYIAD  114 (343)
Q Consensus        37 p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~gi~~~~~~~~l~v~~  114 (343)
                      -++-...+||+-|.++.....+-.||...... ++..                  +.....|  ..+++++ +-.+.|+.
T Consensus       468 iRSckL~pdgrtLivGGeastlsiWDLAapTp-rika------------------eltssapaCyALa~sp-DakvcFsc  527 (705)
T KOG0639|consen  468 IRSCKLLPDGRTLIVGGEASTLSIWDLAAPTP-RIKA------------------ELTSSAPACYALAISP-DAKVCFSC  527 (705)
T ss_pred             eeeeEecCCCceEEeccccceeeeeeccCCCc-chhh------------------hcCCcchhhhhhhcCC-ccceeeee
Confidence            34455567888777776777788888754221 1110                  0111122  2466777 66677776


Q ss_pred             CCCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCC-eEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCc
Q 019290          115 AYFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTG-IVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKN  192 (343)
Q Consensus       115 ~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg-~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~  192 (343)
                      ..+| |.++|+....+.+-.+...    .....|.+.+ || +||-+.                  ..+.|.+||...+.
T Consensus       528 csdGnI~vwDLhnq~~VrqfqGht----DGascIdis~-dGtklWTGG------------------lDntvRcWDlregr  584 (705)
T KOG0639|consen  528 CSDGNIAVWDLHNQTLVRQFQGHT----DGASCIDISK-DGTKLWTGG------------------LDNTVRCWDLREGR  584 (705)
T ss_pred             ccCCcEEEEEcccceeeecccCCC----CCceeEEecC-CCceeecCC------------------Cccceeehhhhhhh
Confidence            6666 8899997654433322221    2356677777 45 466632                  24568889876543


Q ss_pred             eEEeecCC-CCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEeccCCCcc
Q 019290          193 VTVMYNGL-SFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNSARGKI  271 (343)
Q Consensus       193 ~~~~~~~~-~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~~~~~~~  271 (343)
                      .- ...++ +....+-..|.++.|- ..+.++.+++....+..+   . .+...+.-.-.+.+..-|+.|+++.. -+  
T Consensus       585 ql-qqhdF~SQIfSLg~cP~~dWla-vGMens~vevlh~skp~k---y-qlhlheScVLSlKFa~cGkwfvStGk-Dn--  655 (705)
T KOG0639|consen  585 QL-QQHDFSSQIFSLGYCPTGDWLA-VGMENSNVEVLHTSKPEK---Y-QLHLHESCVLSLKFAYCGKWFVSTGK-DN--  655 (705)
T ss_pred             hh-hhhhhhhhheecccCCCcccee-eecccCcEEEEecCCccc---e-eecccccEEEEEEecccCceeeecCc-hh--
Confidence            21 11122 2244555567777554 457788899888665322   1 11111111223566788999998865 22  


Q ss_pred             ccccccccccccCCCcccCCCeEEEE-CCCCCEEEEeeCCCCCccCCceeEEEe-CCEEEEecCCCCeEEEEc
Q 019290          272 ESNKKTAFCEETAKPWFLRDPVGVKF-DVNGNVVDVLDGNEGNTLNSVSEVQEY-GEYLYTGSSVQPYVVVIK  342 (343)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~v~~~-d~~g~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~~~~i~~~~  342 (343)
                                           .+-.+ .|-|..+.  ..++   ...+..|-.. ++++.+++.......+|.
T Consensus       656 ---------------------lLnawrtPyGasiF--qskE---~SsVlsCDIS~ddkyIVTGSGdkkATVYe  702 (705)
T KOG0639|consen  656 ---------------------LLNAWRTPYGASIF--QSKE---SSSVLSCDISFDDKYIVTGSGDKKATVYE  702 (705)
T ss_pred             ---------------------hhhhccCcccccee--eccc---cCcceeeeeccCceEEEecCCCcceEEEE
Confidence                                 22233 25554433  3222   2345555444 777777777776666663

>PHA02713 hypothetical protein; Provisional

Probab=96.59  E-value=0.47  Score=46.38  Aligned_cols=198  Identities=8%  Similarity=0.015  Sum_probs=92.7

Q ss_pred             eEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEee
Q 019290          118 GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMY  197 (343)
Q Consensus       118 gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~  197 (343)
                      .+..||+.++++..+.......   .-..+++-  ++.+|+......           .......+++||+.++.+..+.
T Consensus       273 ~v~~yd~~~~~W~~l~~mp~~r---~~~~~a~l--~~~IYviGG~~~-----------~~~~~~~v~~Yd~~~n~W~~~~  336 (557)
T PHA02713        273 CILVYNINTMEYSVISTIPNHI---INYASAIV--DNEIIIAGGYNF-----------NNPSLNKVYKINIENKIHVELP  336 (557)
T ss_pred             CEEEEeCCCCeEEECCCCCccc---cceEEEEE--CCEEEEEcCCCC-----------CCCccceEEEEECCCCeEeeCC
Confidence            3788999998888775443221   11233443  378998543100           0011346999999888776543


Q ss_pred             cCCCCc---ceeEEecCCCEEEEEEcCC-----CeEEEEEccCccccccceeeecCCCCC--CceeeCCCCCEEEEeccC
Q 019290          198 NGLSFP---NGVALSNNNSFLLLAESAT-----LKILRFWLQGERTTYTPQLFAEMPRFP--DNIKSDSKGEFWIAMNSA  267 (343)
Q Consensus       198 ~~~~~~---~~i~~~~d~~~lyv~~~~~-----~~i~~~~~~~~~~~~~~~~~~~~~~~p--~~i~~d~~G~lwi~~~~~  267 (343)
                      . +..+   .+++.. + +.+|+..-.+     ..+.+|++..    .+.......+...  .+.+ --+|+||+.....
T Consensus       337 ~-m~~~R~~~~~~~~-~-g~IYviGG~~~~~~~~sve~Ydp~~----~~W~~~~~mp~~r~~~~~~-~~~g~IYviGG~~  408 (557)
T PHA02713        337 P-MIKNRCRFSLAVI-D-DTIYAIGGQNGTNVERTIECYTMGD----DKWKMLPDMPIALSSYGMC-VLDQYIYIIGGRT  408 (557)
T ss_pred             C-CcchhhceeEEEE-C-CEEEEECCcCCCCCCceEEEEECCC----CeEEECCCCCcccccccEE-EECCEEEEEeCCC
Confidence            2 2211   233332 3 4588864322     3588888765    2222322222101  1122 2368899875431


Q ss_pred             CCccccccccccccccCCCcccCCCeEEEECCCCCE-EEEeeCCCCCccCCceeEEEeCCEEEEecCCC------CeEEE
Q 019290          268 RGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNV-VDVLDGNEGNTLNSVSEVQEYGEYLYTGSSVQ------PYVVV  340 (343)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~-~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~~------~~i~~  340 (343)
                      ...... .......+...+.......+.+|||..+. ...-+.+..   .....+..-+|+||+.+...      +.+-+
T Consensus       409 ~~~~~~-~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~---r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~  484 (557)
T PHA02713        409 EHIDYT-SVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTG---TIRPGVVSHKDDIYVVCDIKDEKNVKTCIFR  484 (557)
T ss_pred             cccccc-cccccccccccccccccceEEEECCCCCeEeecCCCCcc---cccCcEEEECCEEEEEeCCCCCCccceeEEE
Confidence            110000 00000000000000002468899996543 332222222   12233444589999765432      35678


Q ss_pred             EcC
Q 019290          341 IKA  343 (343)
Q Consensus       341 ~~~  343 (343)
                      |||
T Consensus       485 Ydp  487 (557)
T PHA02713        485 YNT  487 (557)
T ss_pred             ecC
Confidence            875

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.58  E-value=0.28  Score=45.41  Aligned_cols=221  Identities=10%  Similarity=0.065  Sum_probs=93.8

Q ss_pred             CCCCCceEEEcCCCCeeEEEe------cCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCC
Q 019290           33 GVVGPESLAFDCNGEGPYVGV------SDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPV  106 (343)
Q Consensus        33 ~~~~p~~l~~d~~g~~l~~~~------~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~  106 (343)
                      ++..|+.+---++|+++.++.      .-|+++.+|.+|-++..--...                ...........+.+ 
T Consensus       128 g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~----------------~~~~~~gYDfw~qp-  190 (461)
T PF05694_consen  128 GLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKD----------------RGPQPFGYDFWYQP-  190 (461)
T ss_dssp             -EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-----------------TT------EEEET-
T ss_pred             CCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccC----------------CCCCCCCCCeEEcC-
Confidence            666788888889999555331      2357888887764433211100                00011224566677 


Q ss_pred             CCeEEEEe---------------------CCCeEEEEeCCCCeEEEcccccCCCCccCccee--EEeCCCCeEEEEeCCc
Q 019290          107 TCDLYIAD---------------------AYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDL--DIDPNTGIVYFTDSSI  163 (343)
Q Consensus       107 ~~~l~v~~---------------------~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i--~~d~~dg~l~v~~~~~  163 (343)
                      ..++.|++                     .++.+..+|..+.+........+.  ...+-.+  +.+|....=|++..- 
T Consensus       191 r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~--g~~pLEvRflH~P~~~~gFvg~aL-  267 (461)
T PF05694_consen  191 RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEE--GQMPLEVRFLHDPDANYGFVGCAL-  267 (461)
T ss_dssp             TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TT--EEEEEEEEE-SSTT--EEEEEEE--
T ss_pred             CCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCC--CCceEEEEecCCCCccceEEEEec-
Confidence            55555553                     134588999988877655443221  1123233  334432333332211 


Q ss_pred             ccccccceeeeeecCCCceEEEEeC-CCCceE-----Eeec---------C--------CCCcceeEEecCCCEEEEEEc
Q 019290          164 YFQRRQYFMSIATGDRSGRLLKYDP-LKKNVT-----VMYN---------G--------LSFPNGVALSNNNSFLLLAES  220 (343)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~v~~~d~-~~~~~~-----~~~~---------~--------~~~~~~i~~~~d~~~lyv~~~  220 (343)
                                      +..||++-. +.++..     .+..         .        ...+..|.++.|.++||++..
T Consensus       268 ----------------ss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W  331 (461)
T PF05694_consen  268 ----------------SSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNW  331 (461)
T ss_dssp             -----------------EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEET
T ss_pred             ----------------cceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcc
Confidence                            334665543 223321     1110         1        123578889999999999999


Q ss_pred             CCCeEEEEEccCccccccc--eeee---------------cCCCCCCceeeCCCC-CEEEEeccCCCccccccccccccc
Q 019290          221 ATLKILRFWLQGERTTYTP--QLFA---------------EMPRFPDNIKSDSKG-EFWIAMNSARGKIESNKKTAFCEE  282 (343)
Q Consensus       221 ~~~~i~~~~~~~~~~~~~~--~~~~---------------~~~~~p~~i~~d~~G-~lwi~~~~~~~~~~~~~~~~~~~~  282 (343)
                      ..+.|.+||+..+.. .+.  +++.               .+.+-|..+.++-|| +||+++.-         -+.|+.-
T Consensus       332 ~~GdvrqYDISDP~~-Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnSL---------ys~WD~q  401 (461)
T PF05694_consen  332 LHGDVRQYDISDPFN-PKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNSL---------YSAWDKQ  401 (461)
T ss_dssp             TTTEEEEEE-SSTTS--EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-------------HHHHHH
T ss_pred             cCCcEEEEecCCCCC-CcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEeec---------ccccccc
Confidence            999999999875422 110  1110               122336667788888 68888653         1234443


Q ss_pred             cCCCcccCCCeEEEECC
Q 019290          283 TAKPWFLRDPVGVKFDV  299 (343)
Q Consensus       283 ~~~~~~~~~~~v~~~d~  299 (343)
                      +...-..+.+.+.++|.
T Consensus       402 fYP~~~~~g~~m~~iDv  418 (461)
T PF05694_consen  402 FYPDGVKNGSWMLKIDV  418 (461)
T ss_dssp             HSTT------EEEEEEE
T ss_pred             cCCCccccccEEEEEEe
Confidence            33333334455666654

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=96.57  E-value=0.26  Score=44.73  Aligned_cols=110  Identities=16%  Similarity=0.179  Sum_probs=62.9

Q ss_pred             CcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCce-EEe--ec-------------CCCCccee
Q 019290          143 FTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNV-TVM--YN-------------GLSFPNGV  206 (343)
Q Consensus       143 ~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~-~~~--~~-------------~~~~~~~i  206 (343)
                      -+-+|++.+ +|.+|++.....           .......|++++.+ |++ ..+  ..             .-....++
T Consensus        86 D~Egi~~~~-~g~~~is~E~~~-----------~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~l  152 (326)
T PF13449_consen   86 DPEGIAVPP-DGSFWISSEGGR-----------TGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGL  152 (326)
T ss_pred             ChhHeEEec-CCCEEEEeCCcc-----------CCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEE
Confidence            456888977 699999886510           00012679999977 444 222  11             11235789


Q ss_pred             EEecCCCEEEEEEcCC---------------CeEEEEEccCccccccceeeecCC--------CCCCceeeCCCCCEEEE
Q 019290          207 ALSNNNSFLLLAESAT---------------LKILRFWLQGERTTYTPQLFAEMP--------RFPDNIKSDSKGEFWIA  263 (343)
Q Consensus       207 ~~~~d~~~lyv~~~~~---------------~~i~~~~~~~~~~~~~~~~~~~~~--------~~p~~i~~d~~G~lwi~  263 (343)
                      ++++||+.||++....               -+|++|+...... ...+......        ..+..++..++|+++|-
T Consensus       153 a~~~dG~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~-~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL  231 (326)
T PF13449_consen  153 AVSPDGRTLFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGE-PVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL  231 (326)
T ss_pred             EECCCCCEEEEEECccccCCCcccccccCceEEEEEecCCCCCc-cceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence            9999999888764432               3566677654221 1111111211        12444666778888887


Q ss_pred             ecc
Q 019290          264 MNS  266 (343)
Q Consensus       264 ~~~  266 (343)
                      ...
T Consensus       232 ER~  234 (326)
T PF13449_consen  232 ERD  234 (326)
T ss_pred             Ecc
Confidence            654

>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function

Probab=96.51  E-value=0.036  Score=53.39  Aligned_cols=69  Identities=25%  Similarity=0.446  Sum_probs=47.7

Q ss_pred             CCCCcceeEEecCCCEEEEEEcCCC-------------------eEEEEEccCccc---cccceeeec--C---------
Q 019290          199 GLSFPNGVALSNNNSFLLLAESATL-------------------KILRFWLQGERT---TYTPQLFAE--M---------  245 (343)
Q Consensus       199 ~~~~~~~i~~~~d~~~lyv~~~~~~-------------------~i~~~~~~~~~~---~~~~~~~~~--~---------  245 (343)
                      .+..+.++.+++....+|++-+..+                   .|+++++.+...   ..+..++..  .         
T Consensus       348 ~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~~  427 (524)
T PF05787_consen  348 PFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNGS  427 (524)
T ss_pred             cccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCccccccccc
Confidence            3566899999998888999866554                   899998775311   012222221  1         


Q ss_pred             -------CCCCCceeeCCCCCEEEEeccC
Q 019290          246 -------PRFPDNIKSDSKGEFWIAMNSA  267 (343)
Q Consensus       246 -------~~~p~~i~~d~~G~lwi~~~~~  267 (343)
                             -..||+|++|++|+|||++...
T Consensus       428 ~~~~~~~f~sPDNL~~d~~G~LwI~eD~~  456 (524)
T PF05787_consen  428 NKCDDNGFASPDNLAFDPDGNLWIQEDGG  456 (524)
T ss_pred             CcccCCCcCCCCceEECCCCCEEEEeCCC
Confidence                   1249999999999999998763

>smart00135 LY Low-density lipoprotein-receptor YWTD domain

Probab=96.50  E-value=0.013  Score=35.27  Aligned_cols=36  Identities=28%  Similarity=0.258  Sum_probs=32.0

Q ss_pred             ecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290          197 YNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQG  232 (343)
Q Consensus       197 ~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~  232 (343)
                      ......|+++++++.++.+||++...+.|++.++++
T Consensus         5 ~~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g   40 (43)
T smart00135        5 SEGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDG   40 (43)
T ss_pred             ECCCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCC
Confidence            345677999999999999999999999999999876

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=96.46  E-value=0.0071  Score=32.96  Aligned_cols=27  Identities=26%  Similarity=0.619  Sum_probs=23.0

Q ss_pred             CCcceeEEecCCCEEEEEEcCCCeEEEE
Q 019290          201 SFPNGVALSNNNSFLLLAESATLKILRF  228 (343)
Q Consensus       201 ~~~~~i~~~~d~~~lyv~~~~~~~i~~~  228 (343)
                      ..|.|++++++| .+|++++.+++|.+|
T Consensus         2 ~~P~gvav~~~g-~i~VaD~~n~rV~vf   28 (28)
T PF01436_consen    2 NYPHGVAVDSDG-NIYVADSGNHRVQVF   28 (28)
T ss_dssp             SSEEEEEEETTS-EEEEEECCCTEEEEE
T ss_pred             cCCcEEEEeCCC-CEEEEECCCCEEEEC
Confidence            568999999665 599999999999875

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=96.43  E-value=0.13  Score=44.91  Aligned_cols=123  Identities=15%  Similarity=0.211  Sum_probs=82.5

Q ss_pred             EEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEeccCCCcccc
Q 019290          194 TVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNSARGKIES  273 (343)
Q Consensus       194 ~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~~~~~~~~~  273 (343)
                      +++.......+.+.|+|... +.++.+.+++|-.||.........++++.+... ...+.+.|.|.+.+....       
T Consensus       166 RTlYDH~devn~l~FHPre~-ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~-vrsiSfHPsGefllvgTd-------  236 (430)
T KOG0640|consen  166 RTLYDHVDEVNDLDFHPRET-ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEP-VRSISFHPSGEFLLVGTD-------  236 (430)
T ss_pred             eehhhccCcccceeecchhh-eEEeccCCCeEEEEecccHHHHHHHHHhhccce-eeeEeecCCCceEEEecC-------
Confidence            34445556678999999765 667778899999999864322133445544322 456778888876555444       


Q ss_pred             ccccccccccCCCcccCCCeEEEECCCCCEEEEeeCCCCCccCCceeEEEe-CCEEEEecCCCCeEEEEc
Q 019290          274 NKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEGNTLNSVSEVQEY-GEYLYTGSSVQPYVVVIK  342 (343)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~~~~i~~~~  342 (343)
                                       ...+..||.+.-+...-..|+......++.+.-. .++||++......|-..|
T Consensus       237 -----------------Hp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwD  289 (430)
T KOG0640|consen  237 -----------------HPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWD  289 (430)
T ss_pred             -----------------CCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeec
Confidence                             2366667877777666566776566677777654 899999998887776544

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=96.41  E-value=0.45  Score=39.60  Aligned_cols=121  Identities=14%  Similarity=0.166  Sum_probs=72.7

Q ss_pred             CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeE-EEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEE
Q 019290          117 FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIV-YFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTV  195 (343)
Q Consensus       117 ~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l-~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~  195 (343)
                      ..++.++..+..+..+.....    ..+++++..|+ |+- .+....                ....|..||.+...+..
T Consensus        39 ~~l~~~~~~~~~~~~i~l~~~----~~I~~~~WsP~-g~~favi~g~----------------~~~~v~lyd~~~~~i~~   97 (194)
T PF08662_consen   39 FELFYLNEKNIPVESIELKKE----GPIHDVAWSPN-GNEFAVIYGS----------------MPAKVTLYDVKGKKIFS   97 (194)
T ss_pred             EEEEEEecCCCccceeeccCC----CceEEEEECcC-CCEEEEEEcc----------------CCcccEEEcCcccEeEe
Confidence            468888776555544422111    23889999995 654 343211                13367778876444333


Q ss_pred             eecCCCCcceeEEecCCCEEEEEEcC--CCeEEEEEccCccccccceeeecCC-CCCCceeeCCCCCEEEEecc
Q 019290          196 MYNGLSFPNGVALSNNNSFLLLAESA--TLKILRFWLQGERTTYTPQLFAEMP-RFPDNIKSDSKGEFWIAMNS  266 (343)
Q Consensus       196 ~~~~~~~~~~i~~~~d~~~lyv~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~-~~p~~i~~d~~G~lwi~~~~  266 (343)
                      +.  -...+.+.++|+|+.+.++...  .+.|..||...      .+.+.... .....+..+|+|+.+++...
T Consensus        98 ~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~------~~~i~~~~~~~~t~~~WsPdGr~~~ta~t  163 (194)
T PF08662_consen   98 FG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRK------KKKISTFEHSDATDVEWSPDGRYLATATT  163 (194)
T ss_pred             ec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCC------CEEeeccccCcEEEEEEcCCCCEEEEEEe
Confidence            32  2456789999999988877643  46799999763      12222211 12345678999988877543

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=96.39  E-value=0.76  Score=42.34  Aligned_cols=205  Identities=13%  Similarity=0.076  Sum_probs=105.7

Q ss_pred             eeeEEEeCCCCeEEEEeCCCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeee
Q 019290           98 PLGIKFNPVTCDLYIADAYFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIAT  176 (343)
Q Consensus        98 p~gi~~~~~~~~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~  176 (343)
                      .+.++.++ .|.+.++.+..| ||.+...+|..-.+..    +....+..+.+.. ||.++|+...              
T Consensus        84 v~al~s~n-~G~~l~ag~i~g~lYlWelssG~LL~v~~----aHYQ~ITcL~fs~-dgs~iiTgsk--------------  143 (476)
T KOG0646|consen   84 VHALASSN-LGYFLLAGTISGNLYLWELSSGILLNVLS----AHYQSITCLKFSD-DGSHIITGSK--------------  143 (476)
T ss_pred             eeeeecCC-CceEEEeecccCcEEEEEeccccHHHHHH----hhccceeEEEEeC-CCcEEEecCC--------------
Confidence            45677777 788888765555 9999999987543321    1234577888888 6898887654              


Q ss_pred             cCCCceEEEEeC------C-CCceE---EeecCCCCcceeEEecCC--CEEEEEEcCCCeEEEEEccCccccccceeeec
Q 019290          177 GDRSGRLLKYDP------L-KKNVT---VMYNGLSFPNGVALSNNN--SFLLLAESATLKILRFWLQGERTTYTPQLFAE  244 (343)
Q Consensus       177 ~~~~~~v~~~d~------~-~~~~~---~~~~~~~~~~~i~~~~d~--~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~  244 (343)
                         .+.|..|..      . ++.+.   .+.........+.+.+.|  ..|| +.+.+..+..|++.....+.   .+ .
T Consensus       144 ---Dg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~-TaS~D~t~k~wdlS~g~LLl---ti-~  215 (476)
T KOG0646|consen  144 ---DGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLY-TASEDRTIKLWDLSLGVLLL---TI-T  215 (476)
T ss_pred             ---CccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEE-EecCCceEEEEEeccceeeE---EE-e
Confidence               344444432      1 11111   111111223444444321  2344 44567889999987522111   11 1


Q ss_pred             CCCCCCceeeCCCC-CEEEEeccCCCccc--cccccccccccCCCcccCCCeEEEECCCCCEEEEeeCCCCCccCCceeE
Q 019290          245 MPRFPDNIKSDSKG-EFWIAMNSARGKIE--SNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEGNTLNSVSEV  321 (343)
Q Consensus       245 ~~~~p~~i~~d~~G-~lwi~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~~~~~~~~~~~  321 (343)
                      .+..+..+++|+.+ .+|+++.. +..+.  .+....+..         +.-...++.++..+..+-...+  -..++..
T Consensus       216 fp~si~av~lDpae~~~yiGt~~-G~I~~~~~~~~~~~~~---------~v~~k~~~~~~t~~~~~~Gh~~--~~~ITcL  283 (476)
T KOG0646|consen  216 FPSSIKAVALDPAERVVYIGTEE-GKIFQNLLFKLSGQSA---------GVNQKGRHEENTQINVLVGHEN--ESAITCL  283 (476)
T ss_pred             cCCcceeEEEcccccEEEecCCc-ceEEeeehhcCCcccc---------cccccccccccceeeeeccccC--CcceeEE
Confidence            34446678889866 56777655 32221  000000000         0001122334444444332211  1356655


Q ss_pred             EEe-CCEEEEecCCCCeEEEEc
Q 019290          322 QEY-GEYLYTGSSVQPYVVVIK  342 (343)
Q Consensus       322 ~~~-~g~l~i~~~~~~~i~~~~  342 (343)
                      ... +|.|.+.+.....|.+.+
T Consensus       284 ais~DgtlLlSGd~dg~VcvWd  305 (476)
T KOG0646|consen  284 AISTDGTLLLSGDEDGKVCVWD  305 (476)
T ss_pred             EEecCccEEEeeCCCCCEEEEe
Confidence            444 889888888777776654

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=96.38  E-value=0.71  Score=41.52  Aligned_cols=248  Identities=15%  Similarity=0.093  Sum_probs=121.3

Q ss_pred             ceEEEcCCCCeeEEEe-c---------CCEEEEEEcCCCCeE-EeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCC
Q 019290           38 ESLAFDCNGEGPYVGV-S---------DGRILKWKAANSGWT-EFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPV  106 (343)
Q Consensus        38 ~~l~~d~~g~~l~~~~-~---------~g~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~  106 (343)
                      ..++++++|+.+|++. .         ..-|-.||..|...+ ++..++.             .+......++-++++.+
T Consensus        39 ~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k-------------~R~~~~~~~~~~~ls~d  105 (342)
T PF06433_consen   39 GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPK-------------PRAQVVPYKNMFALSAD  105 (342)
T ss_dssp             EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS--------------B--BS--GGGEEE-TT
T ss_pred             CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCc-------------chheecccccceEEccC
Confidence            3477899999888542 1         123667888875433 3332211             01122234566788876


Q ss_pred             CCeEEEEeCC--CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceE-
Q 019290          107 TCDLYIADAY--FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRL-  183 (343)
Q Consensus       107 ~~~l~v~~~~--~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v-  183 (343)
                      ++.+||.+..  ..|-.+|.+.+++......      ..+..+...++ .++..-..                  .|++ 
T Consensus       106 gk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~------PGC~~iyP~~~-~~F~~lC~------------------DGsl~  160 (342)
T PF06433_consen  106 GKFLYVQNFTPATSVTVVDLAAKKVVGEIDT------PGCWLIYPSGN-RGFSMLCG------------------DGSLL  160 (342)
T ss_dssp             SSEEEEEEESSSEEEEEEETTTTEEEEEEEG------TSEEEEEEEET-TEEEEEET------------------TSCEE
T ss_pred             CcEEEEEccCCCCeEEEEECCCCceeeeecC------CCEEEEEecCC-CceEEEec------------------CCceE
Confidence            7788887643  5699999999887654332      23444444442 34332111                  2233 


Q ss_pred             -EEEeCCCCceEE---eecCCC--CcceeEEecCCCEEEEEEcCCCeEEEEEccCcccc--ccceeeec----CCCCCCc
Q 019290          184 -LKYDPLKKNVTV---MYNGLS--FPNGVALSNNNSFLLLAESATLKILRFWLQGERTT--YTPQLFAE----MPRFPDN  251 (343)
Q Consensus       184 -~~~d~~~~~~~~---~~~~~~--~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~--~~~~~~~~----~~~~p~~  251 (343)
                       +.+|.+++....   +.....  -.+--++..++..+|+. +.+|.|+..++.++...  .....+..    ..-.|.|
T Consensus       161 ~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~-Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG  239 (342)
T PF06433_consen  161 TVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFV-SYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGG  239 (342)
T ss_dssp             EEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEE-BTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-S
T ss_pred             EEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEE-ecCCEEEEEeccCCcccccCcccccCccccccCcCCcc
Confidence             333433222211   111001  11222344556677776 46899999998875320  11111111    1113555


Q ss_pred             ---eeeC-CCCCEEEEeccCCCccccccccccccccCCCcc--cCCCeEEEECC-CCCEEEEeeCCCCCccCCceeEEEe
Q 019290          252 ---IKSD-SKGEFWIAMNSARGKIESNKKTAFCEETAKPWF--LRDPVGVKFDV-NGNVVDVLDGNEGNTLNSVSEVQEY  324 (343)
Q Consensus       252 ---i~~d-~~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~~  324 (343)
                         ++++ +.|+||+-++. +.                +|.  .+...|..+|. .++++..++.+..  ...+..-..+
T Consensus       240 ~Q~~A~~~~~~rlyvLMh~-g~----------------~gsHKdpgteVWv~D~~t~krv~Ri~l~~~--~~Si~Vsqd~  300 (342)
T PF06433_consen  240 WQLIAYHAASGRLYVLMHQ-GG----------------EGSHKDPGTEVWVYDLKTHKRVARIPLEHP--IDSIAVSQDD  300 (342)
T ss_dssp             SS-EEEETTTTEEEEEEEE-------------------TT-TTS-EEEEEEEETTTTEEEEEEEEEEE--ESEEEEESSS
T ss_pred             eeeeeeccccCeEEEEecC-CC----------------CCCccCCceEEEEEECCCCeEEEEEeCCCc--cceEEEccCC
Confidence               5565 46789998875 22                121  33457888887 4667777664321  2222222222


Q ss_pred             CCEEEEecCCCCeEEEEcC
Q 019290          325 GEYLYTGSSVQPYVVVIKA  343 (343)
Q Consensus       325 ~g~l~i~~~~~~~i~~~~~  343 (343)
                      +=.||..+.....+.+||+
T Consensus       301 ~P~L~~~~~~~~~l~v~D~  319 (342)
T PF06433_consen  301 KPLLYALSAGDGTLDVYDA  319 (342)
T ss_dssp             S-EEEEEETTTTEEEEEET
T ss_pred             CcEEEEEcCCCCeEEEEeC
Confidence            3345555555566666653

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.37  E-value=0.56  Score=40.26  Aligned_cols=74  Identities=20%  Similarity=0.280  Sum_probs=49.3

Q ss_pred             EEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCCCeE
Q 019290           40 LAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFGL  119 (343)
Q Consensus        40 l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~~gi  119 (343)
                      -..|.++..+|++++++..|.+|+.+... .+.        .-|+|.          .-.+-++++.++.||++.+...+
T Consensus        99 a~~d~~~glIycgshd~~~yalD~~~~~c-Vyk--------skcgG~----------~f~sP~i~~g~~sly~a~t~G~v  159 (354)
T KOG4649|consen   99 AQCDFDGGLIYCGSHDGNFYALDPKTYGC-VYK--------SKCGGG----------TFVSPVIAPGDGSLYAAITAGAV  159 (354)
T ss_pred             eEEcCCCceEEEecCCCcEEEecccccce-EEe--------cccCCc----------eeccceecCCCceEEEEeccceE
Confidence            34588889899999999999999987532 221        111110          11234556657899999765558


Q ss_pred             EEEeCCCCeEEEc
Q 019290          120 MVVGPNGGQAQQL  132 (343)
Q Consensus       120 ~~~d~~~~~~~~~  132 (343)
                      ..++++++..+.+
T Consensus       160 lavt~~~~~~~~~  172 (354)
T KOG4649|consen  160 LAVTKNPYSSTEF  172 (354)
T ss_pred             EEEccCCCCccee
Confidence            8999887755544

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=96.37  E-value=0.51  Score=39.81  Aligned_cols=150  Identities=10%  Similarity=0.028  Sum_probs=86.2

Q ss_pred             eEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEE-eCCC
Q 019290           39 SLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIA-DAYF  117 (343)
Q Consensus        39 ~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~-~~~~  117 (343)
                      +++...|...+.....+..++.||-++++..+                   ++....++.+.+.+.. +-.+.++ ....
T Consensus        64 D~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~R-------------------r~rgH~aqVNtV~fNe-esSVv~SgsfD~  123 (307)
T KOG0316|consen   64 DAALSSDNSKFASCGGDKAVQVWDVNTGKVDR-------------------RFRGHLAQVNTVRFNE-ESSVVASGSFDS  123 (307)
T ss_pred             eccccccccccccCCCCceEEEEEcccCeeee-------------------ecccccceeeEEEecC-cceEEEeccccc
Confidence            33344444433444455578888887765432                   1223456778889987 5555544 3334


Q ss_pred             eEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEee
Q 019290          118 GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMY  197 (343)
Q Consensus       118 gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~  197 (343)
                      .+..+|=++..++++-...+.  ...+.++.+..   ...++.+                 ..|.+-.||...|.... .
T Consensus       124 s~r~wDCRS~s~ePiQildea--~D~V~Si~v~~---heIvaGS-----------------~DGtvRtydiR~G~l~s-D  180 (307)
T KOG0316|consen  124 SVRLWDCRSRSFEPIQILDEA--KDGVSSIDVAE---HEIVAGS-----------------VDGTVRTYDIRKGTLSS-D  180 (307)
T ss_pred             eeEEEEcccCCCCccchhhhh--cCceeEEEecc---cEEEeec-----------------cCCcEEEEEeecceeeh-h
Confidence            588888777666554222111  12344444443   4444332                 26788889987666432 1


Q ss_pred             cCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290          198 NGLSFPNGVALSNNNSFLLLAESATLKILRFWLQG  232 (343)
Q Consensus       198 ~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~  232 (343)
                      .-....+.+.+++|++.+.+. ..++.|..+|-.+
T Consensus       181 y~g~pit~vs~s~d~nc~La~-~l~stlrLlDk~t  214 (307)
T KOG0316|consen  181 YFGHPITSVSFSKDGNCSLAS-SLDSTLRLLDKET  214 (307)
T ss_pred             hcCCcceeEEecCCCCEEEEe-eccceeeecccch
Confidence            112346889999999866554 5677888777554

>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]

Probab=96.35  E-value=0.27  Score=45.33  Aligned_cols=49  Identities=24%  Similarity=0.279  Sum_probs=31.1

Q ss_pred             eEEEEeCCCC-ce--EEeec--CCCCcceeEEecCCCEEEEEEcC-CCeEEEEEcc
Q 019290          182 RLLKYDPLKK-NV--TVMYN--GLSFPNGVALSNNNSFLLLAESA-TLKILRFWLQ  231 (343)
Q Consensus       182 ~v~~~d~~~~-~~--~~~~~--~~~~~~~i~~~~d~~~lyv~~~~-~~~i~~~~~~  231 (343)
                      .+.+.+++++ +.  +.+..  ....+.++++.+||. ||+++.. +++|||....
T Consensus       343 ~~~~~~~~g~~~~~~~~fl~~d~~gR~~dV~v~~DGa-llv~~D~~~g~i~Rv~~~  397 (399)
T COG2133         343 PVLRLRPDGNYKVVLTGFLSGDLGGRPRDVAVAPDGA-LLVLTDQGDGRILRVSYA  397 (399)
T ss_pred             eEEEeccCCCcceEEEEEEecCCCCcccceEECCCCe-EEEeecCCCCeEEEecCC
Confidence            4666766644 21  12222  225789999999986 6666555 6799998754

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=96.35  E-value=0.83  Score=42.06  Aligned_cols=202  Identities=10%  Similarity=0.084  Sum_probs=98.8

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEE-e
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIA-D  114 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~-~  114 (343)
                      .+-++++.+++...|.+..++.|.+++..++....+....+.. ......+.-+.+.........+++++ ++..++. .
T Consensus       144 s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev-~k~~~~~~k~~r~~h~keil~~avS~-Dgkylatgg  221 (479)
T KOG0299|consen  144 SVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEV-LKSHGNPLKESRKGHVKEILTLAVSS-DGKYLATGG  221 (479)
T ss_pred             cceEEEeeccccceeecCCCcceeeeehhcCcccccccccchh-hhhccCCCCcccccccceeEEEEEcC-CCcEEEecC
Confidence            5789999999988998889999999988776544221111000 00000000011111222355678888 5554433 2


Q ss_pred             CCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceE
Q 019290          115 AYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVT  194 (343)
Q Consensus       115 ~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~  194 (343)
                      ....+..++.++.+.........    ..+.++++-....++|.+-..+                +-.+|-.+.- .-++
T Consensus       222 ~d~~v~Iw~~~t~ehv~~~~ghr----~~V~~L~fr~gt~~lys~s~Dr----------------svkvw~~~~~-s~ve  280 (479)
T KOG0299|consen  222 RDRHVQIWDCDTLEHVKVFKGHR----GAVSSLAFRKGTSELYSASADR----------------SVKVWSIDQL-SYVE  280 (479)
T ss_pred             CCceEEEecCcccchhhcccccc----cceeeeeeecCccceeeeecCC----------------ceEEEehhHh-HHHH
Confidence            22347788988765443322211    2356777665346788754431                2334444322 1122


Q ss_pred             EeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEec
Q 019290          195 VMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMN  265 (343)
Q Consensus       195 ~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~  265 (343)
                      .+...-....+|.....++.+-| .-.+.++..|.+..    ....+|....+.++..+.-.+-.+..++.
T Consensus       281 tlyGHqd~v~~IdaL~reR~vtV-GgrDrT~rlwKi~e----esqlifrg~~~sidcv~~In~~HfvsGSd  346 (479)
T KOG0299|consen  281 TLYGHQDGVLGIDALSRERCVTV-GGRDRTVRLWKIPE----ESQLIFRGGEGSIDCVAFINDEHFVSGSD  346 (479)
T ss_pred             HHhCCccceeeechhcccceEEe-ccccceeEEEeccc----cceeeeeCCCCCeeeEEEecccceeeccC
Confidence            22222223344444334443333 32355566666532    11223333445566666533333444433

>PHA02790 Kelch-like protein; Provisional

Probab=96.34  E-value=1  Score=43.15  Aligned_cols=181  Identities=8%  Similarity=-0.056  Sum_probs=92.5

Q ss_pred             CCeEEEEeCC------CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCC
Q 019290          107 TCDLYIADAY------FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRS  180 (343)
Q Consensus       107 ~~~l~v~~~~------~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~  180 (343)
                      ++.||+....      ..+.+||+.+.++..+........   -..++. - +|.+|+.-...               ..
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~---~~~~v~-~-~~~iYviGG~~---------------~~  330 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRL---YASGVP-A-NNKLYVVGGLP---------------NP  330 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhh---cceEEE-E-CCEEEEECCcC---------------CC
Confidence            5677776321      348899999888887765432211   122333 3 48999854320               12


Q ss_pred             ceEEEEeCCCCceEEeecCCCCc-ceeEEecCCCEEEEEEcC---CCeEEEEEccCccccccceeeecCCCCCC--ceee
Q 019290          181 GRLLKYDPLKKNVTVMYNGLSFP-NGVALSNNNSFLLLAESA---TLKILRFWLQGERTTYTPQLFAEMPRFPD--NIKS  254 (343)
Q Consensus       181 ~~v~~~d~~~~~~~~~~~~~~~~-~~i~~~~d~~~lyv~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~p~--~i~~  254 (343)
                      ..+.+||+.++++..+. .+..+ .+.+...-++.+|+..-.   ...+.+|++..    .........+ .|.  .-+.
T Consensus       331 ~sve~ydp~~n~W~~~~-~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~----~~W~~~~~m~-~~r~~~~~~  404 (480)
T PHA02790        331 TSVERWFHGDAAWVNMP-SLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNH----DQWQFGPSTY-YPHYKSCAL  404 (480)
T ss_pred             CceEEEECCCCeEEECC-CCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCC----CEEEeCCCCC-CccccceEE
Confidence            45889999877776543 22221 121111123468886432   24567787654    2222222211 111  1122


Q ss_pred             CCCCCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECCCCC-EEEEeeCCCCCccCCceeEEEeCCEEEEecC
Q 019290          255 DSKGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGN-VVDVLDGNEGNTLNSVSEVQEYGEYLYTGSS  333 (343)
Q Consensus       255 d~~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~-~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~  333 (343)
                      --+|.||+...                           .+.+||++.. ....-+.+..   .....+..-+|+||+.+.
T Consensus       405 ~~~~~IYv~GG---------------------------~~e~ydp~~~~W~~~~~m~~~---r~~~~~~v~~~~IYviGG  454 (480)
T PHA02790        405 VFGRRLFLVGR---------------------------NAEFYCESSNTWTLIDDPIYP---RDNPELIIVDNKLLLIGG  454 (480)
T ss_pred             EECCEEEEECC---------------------------ceEEecCCCCcEeEcCCCCCC---ccccEEEEECCEEEEECC
Confidence            23678888742                           3456888543 3332222211   122233445889997654


Q ss_pred             C-----CCeEEEEcC
Q 019290          334 V-----QPYVVVIKA  343 (343)
Q Consensus       334 ~-----~~~i~~~~~  343 (343)
                      .     .+.+-+||+
T Consensus       455 ~~~~~~~~~ve~Yd~  469 (480)
T PHA02790        455 FYRGSYIDTIEVYNN  469 (480)
T ss_pred             cCCCcccceEEEEEC
Confidence            3     256777775

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=96.28  E-value=0.37  Score=46.23  Aligned_cols=196  Identities=14%  Similarity=0.089  Sum_probs=107.3

Q ss_pred             CCceEEE-cCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEe
Q 019290           36 GPESLAF-DCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIAD  114 (343)
Q Consensus        36 ~p~~l~~-d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~  114 (343)
                      ...+|++ .++...+.++.-+++|+.||.+++..+...........+...        .......+++..+ .+.++++.
T Consensus       119 YVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~s--------G~k~siYSLA~N~-t~t~ivsG  189 (735)
T KOG0308|consen  119 YVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGS--------GPKDSIYSLAMNQ-TGTIIVSG  189 (735)
T ss_pred             hheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCC--------CCccceeeeecCC-cceEEEec
Confidence            4678888 556664446677889999999876322111110001000100        1111245666666 67777774


Q ss_pred             CCCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCc-
Q 019290          115 AYFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKN-  192 (343)
Q Consensus       115 ~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~-  192 (343)
                      ...+ |..+|+++++-..-..   +. -..+..+.+++ ||+-.++.++                 .+.|-.+|....+ 
T Consensus       190 gtek~lr~wDprt~~kimkLr---GH-TdNVr~ll~~d-DGt~~ls~sS-----------------DgtIrlWdLgqQrC  247 (735)
T KOG0308|consen  190 GTEKDLRLWDPRTCKKIMKLR---GH-TDNVRVLLVND-DGTRLLSASS-----------------DGTIRLWDLGQQRC  247 (735)
T ss_pred             CcccceEEeccccccceeeee---cc-ccceEEEEEcC-CCCeEeecCC-----------------CceEEeeeccccce
Confidence            3334 8889999875322112   11 13467888888 6988887766                 4556666653111 


Q ss_pred             eEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCC-CCCEEEEecc
Q 019290          193 VTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDS-KGEFWIAMNS  266 (343)
Q Consensus       193 ~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~-~G~lwi~~~~  266 (343)
                      ...+.-.-.....+..+++-..+|..+ ..+.|++-++.....   ...+.+.......+.... +..+|++++.
T Consensus       248 l~T~~vH~e~VWaL~~~~sf~~vYsG~-rd~~i~~Tdl~n~~~---~tlick~daPv~~l~~~~~~~~~WvtTtd  318 (735)
T KOG0308|consen  248 LATYIVHKEGVWALQSSPSFTHVYSGG-RDGNIYRTDLRNPAK---STLICKEDAPVLKLHLHEHDNSVWVTTTD  318 (735)
T ss_pred             eeeEEeccCceEEEeeCCCcceEEecC-CCCcEEecccCCchh---heEeecCCCchhhhhhccccCCceeeecc
Confidence            222222233356666677777777665 578899988765322   222332221112234332 3447999987

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=96.28  E-value=0.18  Score=44.95  Aligned_cols=179  Identities=17%  Similarity=0.165  Sum_probs=96.2

Q ss_pred             CCceEEEcCCC-CeeEEEecCCEEEEEEcCCCCeE-EeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEE
Q 019290           36 GPESLAFDCNG-EGPYVGVSDGRILKWKAANSGWT-EFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIA  113 (343)
Q Consensus        36 ~p~~l~~d~~g-~~l~~~~~~g~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~  113 (343)
                      +..+|+-.|.. ..+.++..+|.|..||..+.+.. .|                    ....+-+.||+++. ...+.++
T Consensus        68 GV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f--------------------~AH~G~V~Gi~v~~-~~~~tvg  126 (433)
T KOG0268|consen   68 GVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTF--------------------KAHEGLVRGICVTQ-TSFFTVG  126 (433)
T ss_pred             ccchhhcCcchhhhhhccccCceEEEEehhhhhhhhee--------------------ecccCceeeEEecc-cceEEec
Confidence            46777777764 44668889999999998764322 22                    12334578999997 6677777


Q ss_pred             eCCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCc-
Q 019290          114 DAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKN-  192 (343)
Q Consensus       114 ~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~-  192 (343)
                      + ...|-.+-.+....+.+.    +  .....+|..... +..+.+-                   ...|-.||+.... 
T Consensus       127 d-DKtvK~wk~~~~p~~til----g--~s~~~gIdh~~~-~~~FaTc-------------------Ge~i~IWD~~R~~P  179 (433)
T KOG0268|consen  127 D-DKTVKQWKIDGPPLHTIL----G--KSVYLGIDHHRK-NSVFATC-------------------GEQIDIWDEQRDNP  179 (433)
T ss_pred             C-CcceeeeeccCCcceeee----c--cccccccccccc-ccccccc-------------------CceeeecccccCCc
Confidence            4 333333332221111111    1  012333333332 3444422                   1235556653222 


Q ss_pred             eEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEecc
Q 019290          193 VTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNS  266 (343)
Q Consensus       193 ~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~~  266 (343)
                      +..+.-+......+-+.|....+..+...+++|+.||+..+..+.  ++..  .-.++.|+..|++..+++.+.
T Consensus       180 v~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~--KVi~--~mRTN~IswnPeafnF~~a~E  249 (433)
T KOG0268|consen  180 VSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLK--KVIL--TMRTNTICWNPEAFNFVAANE  249 (433)
T ss_pred             cceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccc--eeee--eccccceecCccccceeeccc
Confidence            122222223334555666555555555567899999976533211  2222  223678888888878888776

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=96.23  E-value=0.76  Score=40.43  Aligned_cols=190  Identities=12%  Similarity=0.036  Sum_probs=97.9

Q ss_pred             eeeEEEeCCCCe-EEEEeCCCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeee
Q 019290           98 PLGIKFNPVTCD-LYIADAYFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIA  175 (343)
Q Consensus        98 p~gi~~~~~~~~-l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~  175 (343)
                      ...+.|++ .|. |-++ ..+| +..||..|..+..+..    +....+.+++..+ ||+..++.+.             
T Consensus        26 a~~~~Fs~-~G~~lAvG-c~nG~vvI~D~~T~~iar~ls----aH~~pi~sl~WS~-dgr~LltsS~-------------   85 (405)
T KOG1273|consen   26 AECCQFSR-WGDYLAVG-CANGRVVIYDFDTFRIARMLS----AHVRPITSLCWSR-DGRKLLTSSR-------------   85 (405)
T ss_pred             cceEEecc-Ccceeeee-ccCCcEEEEEccccchhhhhh----ccccceeEEEecC-CCCEeeeecC-------------
Confidence            45677887 555 4444 4555 9999998755433321    1223477899999 6998887654             


Q ss_pred             ecCCCceEEEEeCCCCceEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeec-----CCCCCC
Q 019290          176 TGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAE-----MPRFPD  250 (343)
Q Consensus       176 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~-----~~~~p~  250 (343)
                          ...+-.+|...|..-.-..-.+...+..++|..+...++......-+..+...    .....+..     .+-.++
T Consensus        86 ----D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~----~~h~~Lp~d~d~dln~sas  157 (405)
T KOG1273|consen   86 ----DWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSD----PKHSVLPKDDDGDLNSSAS  157 (405)
T ss_pred             ----CceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecC----CceeeccCCCccccccccc
Confidence                33455666654542110100122344555554444444332233333344332    11122221     111233


Q ss_pred             ceeeCCCCCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECCCC-CEEEEeeCCCCCccCCceeEEE-eCCEE
Q 019290          251 NIKSDSKGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNG-NVVDVLDGNEGNTLNSVSEVQE-YGEYL  328 (343)
Q Consensus       251 ~i~~d~~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g-~~~~~~~~~~~~~~~~~~~~~~-~~g~l  328 (343)
                      ....|+.|+..++.+.|                        |.+..++.+. +.+..+.-.   ....+-.+.. .+|+-
T Consensus       158 ~~~fdr~g~yIitGtsK------------------------Gkllv~~a~t~e~vas~rit---s~~~IK~I~~s~~g~~  210 (405)
T KOG1273|consen  158 HGVFDRRGKYIITGTSK------------------------GKLLVYDAETLECVASFRIT---SVQAIKQIIVSRKGRF  210 (405)
T ss_pred             cccccCCCCEEEEecCc------------------------ceEEEEecchheeeeeeeec---hheeeeEEEEeccCcE
Confidence            34678999877776662                        3555677654 333333221   1234444433 47777


Q ss_pred             EEecCCCCeEEEEc
Q 019290          329 YTGSSVQPYVVVIK  342 (343)
Q Consensus       329 ~i~~~~~~~i~~~~  342 (343)
                      ++.+....-|.+|+
T Consensus       211 liiNtsDRvIR~ye  224 (405)
T KOG1273|consen  211 LIINTSDRVIRTYE  224 (405)
T ss_pred             EEEecCCceEEEEe
Confidence            77776666666664

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=96.23  E-value=0.57  Score=45.62  Aligned_cols=155  Identities=16%  Similarity=0.134  Sum_probs=95.2

Q ss_pred             CceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCC-CcCCeeeEEEeCCCCeEEEEeC
Q 019290           37 PESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEP-LCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        37 p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      -.++++++|+.+++.+....-+-.|+..++++..-                   |.. .-+.+..+++++ .+.+.-...
T Consensus        65 ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~irs-------------------wKa~He~Pvi~ma~~~-~g~LlAtgg  124 (775)
T KOG0319|consen   65 ITALALTPDEEVLVTASRSQLLRVWSLPTGKLIRS-------------------WKAIHEAPVITMAFDP-TGTLLATGG  124 (775)
T ss_pred             hheeeecCCccEEEEeeccceEEEEEcccchHhHh-------------------HhhccCCCeEEEEEcC-CCceEEecc
Confidence            55888999999888888888777788877643211                   111 122345789998 665443322


Q ss_pred             CC-eEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCce-
Q 019290          116 YF-GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNV-  193 (343)
Q Consensus       116 ~~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~-  193 (343)
                      .. .+..+|...+..+.......    ..+..+.+.+. -..|+--.               +...+.+..||..++.. 
T Consensus       125 aD~~v~VWdi~~~~~th~fkG~g----GvVssl~F~~~-~~~~lL~s---------------g~~D~~v~vwnl~~~~tc  184 (775)
T KOG0319|consen  125 ADGRVKVWDIKNGYCTHSFKGHG----GVVSSLLFHPH-WNRWLLAS---------------GATDGTVRVWNLNDKRTC  184 (775)
T ss_pred             ccceEEEEEeeCCEEEEEecCCC----ceEEEEEeCCc-cchhheee---------------cCCCceEEEEEcccCchH
Confidence            23 47888988776655433322    23567777773 33333111               12245678888764433 


Q ss_pred             -EEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290          194 -TVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQG  232 (343)
Q Consensus       194 -~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~  232 (343)
                       .......+...++++.+|+..+. +...+..+..||+..
T Consensus       185 l~~~~~H~S~vtsL~~~~d~~~~l-s~~RDkvi~vwd~~~  223 (775)
T KOG0319|consen  185 LHTMILHKSAVTSLAFSEDSLELL-SVGRDKVIIVWDLVQ  223 (775)
T ss_pred             HHHHHhhhhheeeeeeccCCceEE-EeccCcEEEEeehhh
Confidence             22234567788999999977554 445678899999854

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=96.22  E-value=0.69  Score=39.78  Aligned_cols=187  Identities=8%  Similarity=0.031  Sum_probs=102.8

Q ss_pred             eEEEcCCCCeeEEEecCCEEEEE-EcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCCC
Q 019290           39 SLAFDCNGEGPYVGVSDGRILKW-KAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYF  117 (343)
Q Consensus        39 ~l~~d~~g~~l~~~~~~g~i~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~~  117 (343)
                      -|-+..+|.+||+...+...-.| ..++..+..+.                    ...+.+..+.++.+...+.-+....
T Consensus        15 qiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~--------------------GHtGavW~~Did~~s~~liTGSAD~   74 (327)
T KOG0643|consen   15 QIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYD--------------------GHTGAVWCCDIDWDSKHLITGSADQ   74 (327)
T ss_pred             eEEecCCCcEEEEecCCCCceEEEecCCceeeeec--------------------CCCceEEEEEecCCcceeeeccccc
Confidence            45567778877755444433322 22443333331                    2223456777777444555554445


Q ss_pred             eEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCC-------C
Q 019290          118 GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPL-------K  190 (343)
Q Consensus       118 gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~-------~  190 (343)
                      .+..+|.++|+........     ..+..+-++. +|++.+......+            ...+.|..+|..       +
T Consensus        75 t~kLWDv~tGk~la~~k~~-----~~Vk~~~F~~-~gn~~l~~tD~~m------------g~~~~v~~fdi~~~~~~~~s  136 (327)
T KOG0643|consen   75 TAKLWDVETGKQLATWKTN-----SPVKRVDFSF-GGNLILASTDKQM------------GYTCFVSVFDIRDDSSDIDS  136 (327)
T ss_pred             eeEEEEcCCCcEEEEeecC-----CeeEEEeecc-CCcEEEEEehhhc------------CcceEEEEEEccCChhhhcc
Confidence            5888999999865544332     2345666777 4665543322111            113445555543       1


Q ss_pred             Cc-eEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEecc
Q 019290          191 KN-VTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNS  266 (343)
Q Consensus       191 ~~-~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~~  266 (343)
                      .+ +..+...-+.+....+++-++.++ +.-..+.|.+||......+.....  ......+.|...++...+|+...
T Consensus       137 ~ep~~kI~t~~skit~a~Wg~l~~~ii-~Ghe~G~is~~da~~g~~~v~s~~--~h~~~Ind~q~s~d~T~FiT~s~  210 (327)
T KOG0643|consen  137 EEPYLKIPTPDSKITSALWGPLGETII-AGHEDGSISIYDARTGKELVDSDE--EHSSKINDLQFSRDRTYFITGSK  210 (327)
T ss_pred             cCceEEecCCccceeeeeecccCCEEE-EecCCCcEEEEEcccCceeeechh--hhccccccccccCCcceEEeccc
Confidence            22 223333345667777888888654 445688999999764211011000  11224677889999999998765

>PHA03098 kelch-like protein; Provisional

Probab=96.17  E-value=1.4  Score=42.87  Aligned_cols=194  Identities=8%  Similarity=0.011  Sum_probs=95.2

Q ss_pred             CCeEEEEeCC-------CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCC
Q 019290          107 TCDLYIADAY-------FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDR  179 (343)
Q Consensus       107 ~~~l~v~~~~-------~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~  179 (343)
                      ++.||+....       +.++.+|+.+.++..+.......   .-..++.-  ++.+|+.....            ....
T Consensus       294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R---~~~~~~~~--~~~lyv~GG~~------------~~~~  356 (534)
T PHA03098        294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPR---KNPGVTVF--NNRIYVIGGIY------------NSIS  356 (534)
T ss_pred             CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCccc---ccceEEEE--CCEEEEEeCCC------------CCEe
Confidence            5677776321       24889999998887765433221   12233333  37888843321            0011


Q ss_pred             CceEEEEeCCCCceEEeecCCCCc---ceeEEecCCCEEEEEEcC------CCeEEEEEccCccccccceeeecCCC-CC
Q 019290          180 SGRLLKYDPLKKNVTVMYNGLSFP---NGVALSNNNSFLLLAESA------TLKILRFWLQGERTTYTPQLFAEMPR-FP  249 (343)
Q Consensus       180 ~~~v~~~d~~~~~~~~~~~~~~~~---~~i~~~~d~~~lyv~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~-~p  249 (343)
                      ...+++||+.+++++.... +..+   ...+.  -++.+|+..-.      .+.+++||+..+    +.......+. .-
T Consensus       357 ~~~v~~yd~~~~~W~~~~~-lp~~r~~~~~~~--~~~~iYv~GG~~~~~~~~~~v~~yd~~t~----~W~~~~~~p~~r~  429 (534)
T PHA03098        357 LNTVESWKPGESKWREEPP-LIFPRYNPCVVN--VNNLIYVIGGISKNDELLKTVECFSLNTN----KWSKGSPLPISHY  429 (534)
T ss_pred             cceEEEEcCCCCceeeCCC-cCcCCccceEEE--ECCEEEEECCcCCCCcccceEEEEeCCCC----eeeecCCCCcccc
Confidence            3458999998888765432 2111   12222  23467876421      146888887652    2222222111 00


Q ss_pred             CceeeCCCCCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECCCCC-EEEEeeCCCCCccCCceeEEEeCCEE
Q 019290          250 DNIKSDSKGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGN-VVDVLDGNEGNTLNSVSEVQEYGEYL  328 (343)
Q Consensus       250 ~~i~~d~~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~-~~~~~~~~~~~~~~~~~~~~~~~g~l  328 (343)
                      ..-++--+|.||+.........                ......+.+||+... ....-..+.. ..  ...+...+++|
T Consensus       430 ~~~~~~~~~~iyv~GG~~~~~~----------------~~~~~~v~~yd~~~~~W~~~~~~~~~-r~--~~~~~~~~~~i  490 (534)
T PHA03098        430 GGCAIYHDGKIYVIGGISYIDN----------------IKVYNIVESYNPVTNKWTELSSLNFP-RI--NASLCIFNNKI  490 (534)
T ss_pred             CceEEEECCEEEEECCccCCCC----------------CcccceEEEecCCCCceeeCCCCCcc-cc--cceEEEECCEE
Confidence            1112223577888754211100                000124889998644 3332222211 11  12233348889


Q ss_pred             EEecCC-----CCeEEEEcC
Q 019290          329 YTGSSV-----QPYVVVIKA  343 (343)
Q Consensus       329 ~i~~~~-----~~~i~~~~~  343 (343)
                      |+-+..     .+.+.+||+
T Consensus       491 yv~GG~~~~~~~~~v~~yd~  510 (534)
T PHA03098        491 YVVGGDKYEYYINEIEVYDD  510 (534)
T ss_pred             EEEcCCcCCcccceeEEEeC
Confidence            865533     356788764

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=96.16  E-value=0.73  Score=41.23  Aligned_cols=155  Identities=9%  Similarity=0.099  Sum_probs=95.0

Q ss_pred             CCCCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEE
Q 019290           34 VVGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIA  113 (343)
Q Consensus        34 ~~~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~  113 (343)
                      +++..+|..-|.-++++++..+..+..||..+.. ..+...                  ...+.+..+...+-+..++-+
T Consensus       235 lS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~-~V~~l~------------------GH~~~V~~V~~~~~dpqvit~  295 (460)
T KOG0285|consen  235 LSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRA-SVHVLS------------------GHTNPVASVMCQPTDPQVITG  295 (460)
T ss_pred             cceeEEEeccccceeEEecCCcceEEEeeecccc-eEEEec------------------CCCCcceeEEeecCCCceEEe
Confidence            4567888899988888888888888889988753 222111                  111223455566557788888


Q ss_pred             eCCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCce
Q 019290          114 DAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNV  193 (343)
Q Consensus       114 ~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~  193 (343)
                      .+...|..+|...|+.-... ...   ...+..++..|. -.++.+..                  ...+-.++...|++
T Consensus       296 S~D~tvrlWDl~agkt~~tl-t~h---kksvral~lhP~-e~~fASas------------------~dnik~w~~p~g~f  352 (460)
T KOG0285|consen  296 SHDSTVRLWDLRAGKTMITL-THH---KKSVRALCLHPK-ENLFASAS------------------PDNIKQWKLPEGEF  352 (460)
T ss_pred             cCCceEEEeeeccCceeEee-ecc---cceeeEEecCCc-hhhhhccC------------------CccceeccCCccch
Confidence            66556899998877643221 111   134567788884 66666443                  23455555544443


Q ss_pred             EE-eecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290          194 TV-MYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQG  232 (343)
Q Consensus       194 ~~-~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~  232 (343)
                      -. +...-...+.+.+..|+  +|++...++.++.||...
T Consensus       353 ~~nlsgh~~iintl~~nsD~--v~~~G~dng~~~fwdwks  390 (460)
T KOG0285|consen  353 LQNLSGHNAIINTLSVNSDG--VLVSGGDNGSIMFWDWKS  390 (460)
T ss_pred             hhccccccceeeeeeeccCc--eEEEcCCceEEEEEecCc
Confidence            11 11111224555565554  788888899999999874

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=96.14  E-value=0.0092  Score=32.53  Aligned_cols=27  Identities=19%  Similarity=0.258  Sum_probs=22.9

Q ss_pred             CCCceEEEcCCCCeeEEEecCCEEEEE
Q 019290           35 VGPESLAFDCNGEGPYVGVSDGRILKW   61 (343)
Q Consensus        35 ~~p~~l~~d~~g~~l~~~~~~g~i~~~   61 (343)
                      ..|.+|+.+++|+++.++..+++|.+|
T Consensus         2 ~~P~gvav~~~g~i~VaD~~n~rV~vf   28 (28)
T PF01436_consen    2 NYPHGVAVDSDGNIYVADSGNHRVQVF   28 (28)
T ss_dssp             SSEEEEEEETTSEEEEEECCCTEEEEE
T ss_pred             cCCcEEEEeCCCCEEEEECCCCEEEEC
Confidence            579999999999966688888888775

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=96.07  E-value=0.89  Score=39.70  Aligned_cols=184  Identities=15%  Similarity=0.146  Sum_probs=98.6

Q ss_pred             CceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCC
Q 019290           37 PESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAY  116 (343)
Q Consensus        37 p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~  116 (343)
                      ...+.+.|+|..+.++..+..|+.|+..+. ...+..                 ...-.+.+.++.+.+++..|+.+.+.
T Consensus        50 I~~~~F~P~gs~~aSgG~Dr~I~LWnv~gd-ceN~~~-----------------lkgHsgAVM~l~~~~d~s~i~S~gtD  111 (338)
T KOG0265|consen   50 IYTIKFHPDGSCFASGGSDRAIVLWNVYGD-CENFWV-----------------LKGHSGAVMELHGMRDGSHILSCGTD  111 (338)
T ss_pred             EEEEEECCCCCeEeecCCcceEEEEecccc-ccceee-----------------eccccceeEeeeeccCCCEEEEecCC
Confidence            457778999996667788999999985331 111110                 01223345677778755667777666


Q ss_pred             CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEe
Q 019290          117 FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVM  196 (343)
Q Consensus       117 ~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~  196 (343)
                      ..++.+|.++|+...-....    ...+|.+..... |-..+...+                ..+.+-.+|...+.....
T Consensus       112 k~v~~wD~~tG~~~rk~k~h----~~~vNs~~p~rr-g~~lv~Sgs----------------dD~t~kl~D~R~k~~~~t  170 (338)
T KOG0265|consen  112 KTVRGWDAETGKRIRKHKGH----TSFVNSLDPSRR-GPQLVCSGS----------------DDGTLKLWDIRKKEAIKT  170 (338)
T ss_pred             ceEEEEecccceeeehhccc----cceeeecCcccc-CCeEEEecC----------------CCceEEEEeecccchhhc
Confidence            77999999999865543322    135666665443 443333222                145566667654432221


Q ss_pred             ecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCC---CCceeeCCCCCEEEEecc
Q 019290          197 YNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRF---PDNIKSDSKGEFWIAMNS  266 (343)
Q Consensus       197 ~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~---p~~i~~d~~G~lwi~~~~  266 (343)
                      ...-....++.|..++.... +.--++.|-.|++..+.    ....  ..|+   ..++...++|....+...
T Consensus       171 ~~~kyqltAv~f~d~s~qv~-sggIdn~ikvWd~r~~d----~~~~--lsGh~DtIt~lsls~~gs~llsnsM  236 (338)
T KOG0265|consen  171 FENKYQLTAVGFKDTSDQVI-SGGIDNDIKVWDLRKND----GLYT--LSGHADTITGLSLSRYGSFLLSNSM  236 (338)
T ss_pred             cccceeEEEEEeccccccee-eccccCceeeeccccCc----ceEE--eecccCceeeEEeccCCCccccccc
Confidence            11112234455544444333 33346677788874321    1111  2222   334556667766665443

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=95.98  E-value=0.36  Score=43.33  Aligned_cols=127  Identities=13%  Similarity=0.111  Sum_probs=69.1

Q ss_pred             EcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCee---eEEEeCCCCeEEEEeC---
Q 019290           42 FDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPL---GIKFNPVTCDLYIADA---  115 (343)
Q Consensus        42 ~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~---gi~~~~~~~~l~v~~~---  115 (343)
                      ++..+..+|+.+.+|.|+..|..+.....-..-.-....+          ....++|-   -+++++..++||+.=+   
T Consensus       191 ~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e----------~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~  260 (342)
T PF06433_consen  191 YSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAE----------KADGWRPGGWQLIAYHAASGRLYVLMHQGG  260 (342)
T ss_dssp             EETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHH----------HHTTEEE-SSS-EEEETTTTEEEEEEEE--
T ss_pred             eECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccc----------cccCcCCcceeeeeeccccCeEEEEecCCC
Confidence            3445554666778899999988775533221111000000          00122343   3778877889998621   


Q ss_pred             ----C---CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCC-eEEEEeCCcccccccceeeeeecCCCceEEEEe
Q 019290          116 ----Y---FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTG-IVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYD  187 (343)
Q Consensus       116 ----~---~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg-~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d  187 (343)
                          .   ..|+.+|+++++...-....     ..+.+|.+...+. .||..+..                 .+.|+.+|
T Consensus       261 ~gsHKdpgteVWv~D~~t~krv~Ri~l~-----~~~~Si~Vsqd~~P~L~~~~~~-----------------~~~l~v~D  318 (342)
T PF06433_consen  261 EGSHKDPGTEVWVYDLKTHKRVARIPLE-----HPIDSIAVSQDDKPLLYALSAG-----------------DGTLDVYD  318 (342)
T ss_dssp             TT-TTS-EEEEEEEETTTTEEEEEEEEE-----EEESEEEEESSSS-EEEEEETT-----------------TTEEEEEE
T ss_pred             CCCccCCceEEEEEECCCCeEEEEEeCC-----CccceEEEccCCCcEEEEEcCC-----------------CCeEEEEe
Confidence                1   24999999998754433221     1245777776323 45554433                 46799999


Q ss_pred             CCCCceEEeecCC
Q 019290          188 PLKKNVTVMYNGL  200 (343)
Q Consensus       188 ~~~~~~~~~~~~~  200 (343)
                      ..+|+...-...+
T Consensus       319 ~~tGk~~~~~~~l  331 (342)
T PF06433_consen  319 AATGKLVRSIEQL  331 (342)
T ss_dssp             TTT--EEEEE---
T ss_pred             CcCCcEEeehhcc
Confidence            9988876544333

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=95.94  E-value=0.15  Score=46.01  Aligned_cols=184  Identities=13%  Similarity=0.116  Sum_probs=103.2

Q ss_pred             CceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCC
Q 019290           37 PESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAY  116 (343)
Q Consensus        37 p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~  116 (343)
                      ...+.+.++|+.|.+++..|..-.|+..+=.+..+..                   .....+..+.... +++..|+...
T Consensus        99 V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQ-------------------aHDs~Vr~m~ws~-~g~wmiSgD~  158 (464)
T KOG0284|consen   99 VNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQ-------------------AHDSPVRTMKWSH-NGTWMISGDK  158 (464)
T ss_pred             eeeEEEcCCCceeEeecccccEEEecCceeeHHHHhh-------------------hhcccceeEEEcc-CCCEEEEcCC
Confidence            4577889999999999888877777653311111111                   1112345677776 5555554334


Q ss_pred             Ce-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCc-eE
Q 019290          117 FG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKN-VT  194 (343)
Q Consensus       117 ~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~-~~  194 (343)
                      .| |-.+++.-..++.+ +   ......+.++++.++ +.-|++.+.                 .+.|-.+|-.-.+ -+
T Consensus       159 gG~iKyWqpnmnnVk~~-~---ahh~eaIRdlafSpn-DskF~t~Sd-----------------Dg~ikiWdf~~~kee~  216 (464)
T KOG0284|consen  159 GGMIKYWQPNMNNVKII-Q---AHHAEAIRDLAFSPN-DSKFLTCSD-----------------DGTIKIWDFRMPKEER  216 (464)
T ss_pred             CceEEecccchhhhHHh-h---HhhhhhhheeccCCC-CceeEEecC-----------------CCeEEEEeccCCchhh
Confidence            55 44445543323221 1   122246889999995 777877654                 4555555543222 23


Q ss_pred             EeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEecc
Q 019290          195 VMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNS  266 (343)
Q Consensus       195 ~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~~  266 (343)
                      .+......+..++++|... |.++...++-|-.||..+..   ....+..-....-++.+.++|++..+...
T Consensus       217 vL~GHgwdVksvdWHP~kg-LiasgskDnlVKlWDprSg~---cl~tlh~HKntVl~~~f~~n~N~Llt~sk  284 (464)
T KOG0284|consen  217 VLRGHGWDVKSVDWHPTKG-LIASGSKDNLVKLWDPRSGS---CLATLHGHKNTVLAVKFNPNGNWLLTGSK  284 (464)
T ss_pred             eeccCCCCcceeccCCccc-eeEEccCCceeEeecCCCcc---hhhhhhhccceEEEEEEcCCCCeeEEccC
Confidence            3444556688899998765 67777777777778865421   11111111222334556777755555433

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=95.91  E-value=0.47  Score=42.93  Aligned_cols=145  Identities=16%  Similarity=0.164  Sum_probs=82.0

Q ss_pred             eEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCCC-eEEEEeCCCC
Q 019290           49 PYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYF-GLMVVGPNGG  127 (343)
Q Consensus        49 l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~~-gi~~~d~~~~  127 (343)
                      |.++..+..|..|+-.|++.-.-.                    .......++.+.. +|.++++...+ .|..+|++++
T Consensus       147 Llsag~Dn~v~iWnv~tgeali~l--------------------~hpd~i~S~sfn~-dGs~l~TtckDKkvRv~dpr~~  205 (472)
T KOG0303|consen  147 LLSAGSDNTVSIWNVGTGEALITL--------------------DHPDMVYSMSFNR-DGSLLCTTCKDKKVRVIDPRRG  205 (472)
T ss_pred             HhhccCCceEEEEeccCCceeeec--------------------CCCCeEEEEEecc-CCceeeeecccceeEEEcCCCC
Confidence            334445667888887775422110                    1233467888998 88888886554 4999999998


Q ss_pred             eEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEeecCCCCcceeE
Q 019290          128 QAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVA  207 (343)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~i~  207 (343)
                      ++..-.....+   ..+..+.+-. +|.++-+..++ +  .           .-.+-.+|++.-+.-.....+...+|+.
T Consensus       206 ~~v~e~~~heG---~k~~Raifl~-~g~i~tTGfsr-~--s-----------eRq~aLwdp~nl~eP~~~~elDtSnGvl  267 (472)
T KOG0303|consen  206 TVVSEGVAHEG---AKPARAIFLA-SGKIFTTGFSR-M--S-----------ERQIALWDPNNLEEPIALQELDTSNGVL  267 (472)
T ss_pred             cEeeecccccC---CCcceeEEec-cCceeeecccc-c--c-----------ccceeccCcccccCcceeEEeccCCceE
Confidence            87654333333   2233444444 36644333221 0  0           1123344443211111122334455554


Q ss_pred             ---EecCCCEEEEEEcCCCeEEEEEccC
Q 019290          208 ---LSNNNSFLLLAESATLKILRFWLQG  232 (343)
Q Consensus       208 ---~~~d~~~lyv~~~~~~~i~~~~~~~  232 (343)
                         +++|.+.+|++.-.++.|..|.+..
T Consensus       268 ~PFyD~dt~ivYl~GKGD~~IRYyEit~  295 (472)
T KOG0303|consen  268 LPFYDPDTSIVYLCGKGDSSIRYFEITN  295 (472)
T ss_pred             EeeecCCCCEEEEEecCCcceEEEEecC
Confidence               4678889999999899998888764

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=95.91  E-value=0.25  Score=44.44  Aligned_cols=140  Identities=15%  Similarity=0.111  Sum_probs=83.4

Q ss_pred             CCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCe-EEEEeCCCeEEEEeC
Q 019290           46 GEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCD-LYIADAYFGLMVVGP  124 (343)
Q Consensus        46 g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~-l~v~~~~~gi~~~d~  124 (343)
                      |..++.+..+..++.|+|.... +.+                 .++......++.+.|+| +++ +--+.+...|..++-
T Consensus       336 ~erlVSgsDd~tlflW~p~~~k-kpi-----------------~rmtgHq~lVn~V~fSP-d~r~IASaSFDkSVkLW~g  396 (480)
T KOG0271|consen  336 GERLVSGSDDFTLFLWNPFKSK-KPI-----------------TRMTGHQALVNHVSFSP-DGRYIASASFDKSVKLWDG  396 (480)
T ss_pred             cceeEEecCCceEEEecccccc-cch-----------------hhhhchhhheeeEEECC-CccEEEEeecccceeeeeC
Confidence            4458888888999999885422 111                 12223344578899998 443 333334456888998


Q ss_pred             CCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEee-cCCCCc
Q 019290          125 NGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMY-NGLSFP  203 (343)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~-~~~~~~  203 (343)
                      ++|++-......    ...++.++... |.+|.++-+.                 ...+=.++..++++..-. ......
T Consensus       397 ~tGk~lasfRGH----v~~VYqvawsa-DsRLlVS~Sk-----------------DsTLKvw~V~tkKl~~DLpGh~DEV  454 (480)
T KOG0271|consen  397 RTGKFLASFRGH----VAAVYQVAWSA-DSRLLVSGSK-----------------DSTLKVWDVRTKKLKQDLPGHADEV  454 (480)
T ss_pred             CCcchhhhhhhc----cceeEEEEecc-CccEEEEcCC-----------------CceEEEEEeeeeeecccCCCCCceE
Confidence            888754322211    23578889888 6899997764                 223444444445543222 123346


Q ss_pred             ceeEEecCCCEEEEEEcCCCeEEEE
Q 019290          204 NGVALSNNNSFLLLAESATLKILRF  228 (343)
Q Consensus       204 ~~i~~~~d~~~lyv~~~~~~~i~~~  228 (343)
                      .++.++|||+. . +.....+++++
T Consensus       455 f~vDwspDG~r-V-~sggkdkv~~l  477 (480)
T KOG0271|consen  455 FAVDWSPDGQR-V-ASGGKDKVLRL  477 (480)
T ss_pred             EEEEecCCCce-e-ecCCCceEEEe
Confidence            77888899874 3 33445566654

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.86  E-value=2.3  Score=42.75  Aligned_cols=153  Identities=13%  Similarity=0.185  Sum_probs=95.8

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCC-eEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEe
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSG-WTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIAD  114 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~  114 (343)
                      ...+|.+-|..-.+.++-+.|.|..||..=+. +.+|                    ....+.+.|+.|++ .+-|||+.
T Consensus        11 RvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rF--------------------deHdGpVRgv~FH~-~qplFVSG   69 (1202)
T KOG0292|consen   11 RVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRF--------------------DEHDGPVRGVDFHP-TQPLFVSG   69 (1202)
T ss_pred             cccceecCCCCCEEEEeecCceeeeehhhhhhHHhhh--------------------hccCCccceeeecC-CCCeEEec
Confidence            46788999988855678889988888875321 1112                    22344568999999 88899984


Q ss_pred             CCC-eEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCce
Q 019290          115 AYF-GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNV  193 (343)
Q Consensus       115 ~~~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~  193 (343)
                      ..+ -|-+++.++.+  .+ ....+ ....+..+.+.++  .=|+--.+                -...|..|+..+++.
T Consensus        70 GDDykIkVWnYk~rr--cl-ftL~G-HlDYVRt~~FHhe--yPWIlSAS----------------DDQTIrIWNwqsr~~  127 (1202)
T KOG0292|consen   70 GDDYKIKVWNYKTRR--CL-FTLLG-HLDYVRTVFFHHE--YPWILSAS----------------DDQTIRIWNWQSRKC  127 (1202)
T ss_pred             CCccEEEEEecccce--eh-hhhcc-ccceeEEeeccCC--CceEEEcc----------------CCCeEEEEeccCCce
Confidence            222 25566655433  22 22222 1245666777763  55552221                134566677776766


Q ss_pred             EEeecCCCC-cceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290          194 TVMYNGLSF-PNGVALSNNNSFLLLAESATLKILRFWLQG  232 (343)
Q Consensus       194 ~~~~~~~~~-~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~  232 (343)
                      .....+-.+ .....|+|.+. ++|+.+-+++|.+||+.|
T Consensus       128 iavltGHnHYVMcAqFhptED-lIVSaSLDQTVRVWDisG  166 (1202)
T KOG0292|consen  128 IAVLTGHNHYVMCAQFHPTED-LIVSASLDQTVRVWDISG  166 (1202)
T ss_pred             EEEEecCceEEEeeccCCccc-eEEEecccceEEEEeecc
Confidence            555444332 45666888655 788888999999999987

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=95.79  E-value=0.45  Score=41.97  Aligned_cols=117  Identities=10%  Similarity=0.049  Sum_probs=68.1

Q ss_pred             CeeeEEEeCCCCeEEEEeCCCeEEEEeC-CCCeEEEcccc----cCCCCccCcceeEEeCCCCeEE-EEeCCcccccccc
Q 019290           97 RPLGIKFNPVTCDLYIADAYFGLMVVGP-NGGQAQQLASS----AGGIPFRFTNDLDIDPNTGIVY-FTDSSIYFQRRQY  170 (343)
Q Consensus        97 ~p~gi~~~~~~~~l~v~~~~~gi~~~d~-~~~~~~~~~~~----~~~~~~~~~~~i~~d~~dg~l~-v~~~~~~~~~~~~  170 (343)
                      ..++++|++++..||.+ ..+.|..+|. +.|..-+....    ..++ ...+..+++.|.+-.++ ++..++       
T Consensus       160 aAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq-~giisc~a~sP~~~~~~a~gsY~q-------  230 (406)
T KOG2919|consen  160 AAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQ-KGIISCFAFSPMDSKTLAVGSYGQ-------  230 (406)
T ss_pred             hheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccc-cceeeeeeccCCCCcceeeecccc-------
Confidence            46889999944455555 5667999987 55543222211    1121 13355677777533233 322221       


Q ss_pred             eeeeeecCCCceEEEEeCCCCceEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290          171 FMSIATGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQG  232 (343)
Q Consensus       171 ~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~  232 (343)
                               .-+||+.+.. +-...+........=+++.++|+.||........|.+||+.-
T Consensus       231 ---------~~giy~~~~~-~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~  282 (406)
T KOG2919|consen  231 ---------RVGIYNDDGR-RPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRY  282 (406)
T ss_pred             ---------eeeeEecCCC-CceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehh
Confidence                     2346665532 222223333344566788999999999888889999999853

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=95.78  E-value=1.6  Score=40.44  Aligned_cols=166  Identities=13%  Similarity=0.109  Sum_probs=94.1

Q ss_pred             ccccccCCCCC----CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEE-eeecCCCccccccCCCCCcccCCCcCCee
Q 019290           25 SYQQLQLPGVV----GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTE-FATTAPHRAREICDGSTNTTLEPLCGRPL   99 (343)
Q Consensus        25 ~~~~~~~~~~~----~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~   99 (343)
                      .++++..|.+.    ...+|++.|..-.=++-+..-++-.|+..+.+... |.                    .-.....
T Consensus        13 ~w~~~~~~~~~ke~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~s--------------------rFk~~v~   72 (487)
T KOG0310|consen   13 YWRQETFPPVHKEHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFS--------------------RFKDVVY   72 (487)
T ss_pred             hhhhhcccccccccCcceeEecCCCCCCceEEecccEEEEEecchhhhhhhHH--------------------hhcccee
Confidence            44555555332    36688898864423444556677778765532211 10                    0011346


Q ss_pred             eEEEeCCCCeEEEEeCCCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecC
Q 019290          100 GIKFNPVTCDLYIADAYFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGD  178 (343)
Q Consensus       100 gi~~~~~~~~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~  178 (343)
                      ++.|.. +|.|+.+....| +..+|.++..+-+.....    ...++...+.+.|+.++++.+.                
T Consensus        73 s~~fR~-DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah----~apv~~~~f~~~d~t~l~s~sD----------------  131 (487)
T KOG0310|consen   73 SVDFRS-DGRLLAAGDESGHVKVFDMKSRVILRQLYAH----QAPVHVTKFSPQDNTMLVSGSD----------------  131 (487)
T ss_pred             EEEeec-CCeEEEccCCcCcEEEeccccHHHHHHHhhc----cCceeEEEecccCCeEEEecCC----------------
Confidence            788887 788887755566 777885432111111111    1235666777766777775543                


Q ss_pred             CCceEEEEeCCCCceEEeec-CCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290          179 RSGRLLKYDPLKKNVTVMYN-GLSFPNGVALSNNNSFLLLAESATLKILRFWLQG  232 (343)
Q Consensus       179 ~~~~v~~~d~~~~~~~~~~~-~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~  232 (343)
                       ...+-.+|..+..+..... .-......++.|...++.++...++.|..||...
T Consensus       132 -d~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~  185 (487)
T KOG0310|consen  132 -DKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRS  185 (487)
T ss_pred             -CceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEecc
Confidence             2223344555554421222 2223456677777778999999999999999764

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=95.75  E-value=1.6  Score=40.06  Aligned_cols=185  Identities=9%  Similarity=0.086  Sum_probs=83.9

Q ss_pred             eEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEe----
Q 019290           39 SLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIAD----  114 (343)
Q Consensus        39 ~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~----  114 (343)
                      +.+..++.+.+|.-.++.+|.++|.++++...+-..+...                  ...|....+.+++.+++.    
T Consensus        85 g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~------------------~g~gt~v~n~d~t~~~g~e~~~  146 (386)
T PF14583_consen   85 GGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDW------------------KGYGTWVANSDCTKLVGIEISR  146 (386)
T ss_dssp             T-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTE------------------EEEEEEEE-TTSSEEEEEEEEG
T ss_pred             ceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCccc------------------ccccceeeCCCccEEEEEEEee
Confidence            5666677675554345678999999998765553322111                  111222212244444431    


Q ss_pred             -------------------CCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeE-EEEeCCcccccccceeee
Q 019290          115 -------------------AYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIV-YFTDSSIYFQRRQYFMSI  174 (343)
Q Consensus       115 -------------------~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l-~v~~~~~~~~~~~~~~~~  174 (343)
                                         ...+|+.+|+++|+.+.+....     .+++.+-+.|.|..+ -+...+.           
T Consensus       147 ~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~-----~wlgH~~fsP~dp~li~fCHEGp-----------  210 (386)
T PF14583_consen  147 EDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDT-----DWLGHVQFSPTDPTLIMFCHEGP-----------  210 (386)
T ss_dssp             GG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEES-----S-EEEEEEETTEEEEEEEEE-S------------
T ss_pred             hhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecC-----ccccCcccCCCCCCEEEEeccCC-----------
Confidence                               1246999999999988775432     345556665543332 2222210           


Q ss_pred             eecCC-CceEEEEeCCCCceEEeecCCCCcceeE----EecCCCEEEE-EEcCCC---eEEEEEccCccccccceeeecC
Q 019290          175 ATGDR-SGRLLKYDPLKKNVTVMYNGLSFPNGVA----LSNNNSFLLL-AESATL---KILRFWLQGERTTYTPQLFAEM  245 (343)
Q Consensus       175 ~~~~~-~~~v~~~d~~~~~~~~~~~~~~~~~~i~----~~~d~~~lyv-~~~~~~---~i~~~~~~~~~~~~~~~~~~~~  245 (343)
                        -.. ..+||.++.++.....+...  .+..++    +.+||..++. .-..++   .|..+++.+    .+.+.+...
T Consensus       211 --w~~Vd~RiW~i~~dg~~~~~v~~~--~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t----~~~~~~~~~  282 (386)
T PF14583_consen  211 --WDLVDQRIWTINTDGSNVKKVHRR--MEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDT----GERRRLMEM  282 (386)
T ss_dssp             --TTTSS-SEEEEETTS---EESS-----TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT------EEEEEEE
T ss_pred             --cceeceEEEEEEcCCCcceeeecC--CCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCC----CCceEEEeC
Confidence              001 24788888776666554322  122222    4578876655 332222   344455543    222333332


Q ss_pred             CCCCCceeeCCCCCEEEEecc
Q 019290          246 PRFPDNIKSDSKGEFWIAMNS  266 (343)
Q Consensus       246 ~~~p~~i~~d~~G~lwi~~~~  266 (343)
                      +. -.-+....||+|++++..
T Consensus       283 p~-~~H~~ss~Dg~L~vGDG~  302 (386)
T PF14583_consen  283 PW-CSHFMSSPDGKLFVGDGG  302 (386)
T ss_dssp             -S-EEEEEE-TTSSEEEEEE-
T ss_pred             Cc-eeeeEEcCCCCEEEecCC
Confidence            21 223566789999999865

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=95.75  E-value=0.66  Score=42.16  Aligned_cols=135  Identities=16%  Similarity=0.104  Sum_probs=81.9

Q ss_pred             CCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCCCeEEEEeCC
Q 019290           46 GEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFGLMVVGPN  125 (343)
Q Consensus        46 g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~~gi~~~d~~  125 (343)
                      +..+..+..+..|..||..+.....-                    .+..+...++.+..++..|......+-+-.+|..
T Consensus       312 ~~~~~SgH~DkkvRfwD~Rs~~~~~s--------------------v~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlR  371 (459)
T KOG0288|consen  312 ISDVISGHFDKKVRFWDIRSADKTRS--------------------VPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLR  371 (459)
T ss_pred             ceeeeecccccceEEEeccCCceeeE--------------------eecCcceeeEeeccCCeEEeeecCCCceeeeecc
Confidence            34345677888888898765443321                    1233456677777745567766445568889988


Q ss_pred             CCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEeecCCC---C
Q 019290          126 GGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLS---F  202 (343)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~  202 (343)
                      +..+...+....-....-.+.+.+.| |+.... ..+                ..+.||.|+..+++.+...+...   .
T Consensus       372 t~eI~~~~sA~g~k~asDwtrvvfSp-d~~Yva-AGS----------------~dgsv~iW~v~tgKlE~~l~~s~s~~a  433 (459)
T KOG0288|consen  372 TKEIRQTFSAEGFKCASDWTRVVFSP-DGSYVA-AGS----------------ADGSVYIWSVFTGKLEKVLSLSTSNAA  433 (459)
T ss_pred             cccEEEEeeccccccccccceeEECC-CCceee-ecc----------------CCCcEEEEEccCceEEEEeccCCCCcc
Confidence            77666543221111112367788888 455444 322                26789999999888875543322   2


Q ss_pred             cceeEEecCCCEEEEE
Q 019290          203 PNGVALSNNNSFLLLA  218 (343)
Q Consensus       203 ~~~i~~~~d~~~lyv~  218 (343)
                      ...+.+++.|..|.-+
T Consensus       434 I~s~~W~~sG~~Llsa  449 (459)
T KOG0288|consen  434 ITSLSWNPSGSGLLSA  449 (459)
T ss_pred             eEEEEEcCCCchhhcc
Confidence            4566777777666544

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=95.73  E-value=1.2  Score=38.31  Aligned_cols=181  Identities=11%  Similarity=0.093  Sum_probs=100.2

Q ss_pred             CCceEEEcCCCC-eeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEe
Q 019290           36 GPESLAFDCNGE-GPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIAD  114 (343)
Q Consensus        36 ~p~~l~~d~~g~-~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~  114 (343)
                      ..+-++.++... .+.++..+..|.++|...++...-.                    ...+.-.-+...|+++.+-+++
T Consensus        66 svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i--------------------~~~~eni~i~wsp~g~~~~~~~  125 (313)
T KOG1407|consen   66 SVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARI--------------------ETKGENINITWSPDGEYIAVGN  125 (313)
T ss_pred             chhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEe--------------------eccCcceEEEEcCCCCEEEEec
Confidence            577889998754 4446667778999998765543221                    1111223466677566677776


Q ss_pred             CCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCce--EEEEeCCCCc
Q 019290          115 AYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGR--LLKYDPLKKN  192 (343)
Q Consensus       115 ~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~--v~~~d~~~~~  192 (343)
                      ..+.|..+|.++.++..-.+.     .-..|.+...- ++.++|.+.+                 -|.  |..|- .-+.
T Consensus       126 kdD~it~id~r~~~~~~~~~~-----~~e~ne~~w~~-~nd~Fflt~G-----------------lG~v~ILsyp-sLkp  181 (313)
T KOG1407|consen  126 KDDRITFIDARTYKIVNEEQF-----KFEVNEISWNN-SNDLFFLTNG-----------------LGCVEILSYP-SLKP  181 (313)
T ss_pred             CcccEEEEEecccceeehhcc-----cceeeeeeecC-CCCEEEEecC-----------------CceEEEEecc-cccc
Confidence            566788888776543322111     13467777775 5888886654                 233  44442 2122


Q ss_pred             eEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEe
Q 019290          193 VTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAM  264 (343)
Q Consensus       193 ~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~  264 (343)
                      +..+......-..|.|+|+|+++ .+.+.+..+..||++.  . --.+.+..+.--.+-+.+.-+|++..+.
T Consensus       182 v~si~AH~snCicI~f~p~Gryf-A~GsADAlvSLWD~~E--L-iC~R~isRldwpVRTlSFS~dg~~lASa  249 (313)
T KOG1407|consen  182 VQSIKAHPSNCICIEFDPDGRYF-ATGSADALVSLWDVDE--L-ICERCISRLDWPVRTLSFSHDGRMLASA  249 (313)
T ss_pred             ccccccCCcceEEEEECCCCceE-eeccccceeeccChhH--h-hhheeeccccCceEEEEeccCcceeecc
Confidence            22333333444567788999854 3455667777888654  1 2223333322112334555566555443

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.66  E-value=1  Score=41.35  Aligned_cols=145  Identities=11%  Similarity=0.173  Sum_probs=82.6

Q ss_pred             eEEEeCCCCe-EEEEeC---CC--eEEEEeCCCCeEEEcccccCCCCccCcceeEEe-CC-CCeEEEEeCCcccccccce
Q 019290          100 GIKFNPVTCD-LYIADA---YF--GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDID-PN-TGIVYFTDSSIYFQRRQYF  171 (343)
Q Consensus       100 gi~~~~~~~~-l~v~~~---~~--gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d-~~-dg~l~v~~~~~~~~~~~~~  171 (343)
                      .+...+ ++. +++.-.   .+  .+..+|..++..+.+.......=........+- +. +.-+|++...         
T Consensus       188 ~v~W~~-d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~---------  257 (353)
T PF00930_consen  188 RVGWSP-DGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERD---------  257 (353)
T ss_dssp             EEEEEE-TTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETT---------
T ss_pred             cceecC-CCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcC---------
Confidence            344445 444 666522   12  277788877766554332221111222233332 21 2346665532         


Q ss_pred             eeeeecCCCceEEEEeCCCCceEEeecCCCCc-ceeEEecCCCEEEEEEcC----CCeEEEEEcc-CccccccceeeecC
Q 019290          172 MSIATGDRSGRLLKYDPLKKNVTVMYNGLSFP-NGVALSNNNSFLLLAESA----TLKILRFWLQ-GERTTYTPQLFAEM  245 (343)
Q Consensus       172 ~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~-~~i~~~~d~~~lyv~~~~----~~~i~~~~~~-~~~~~~~~~~~~~~  245 (343)
                             +...|+.++.+++..+.+..+--.. .-+.++++++.+|++...    ...||+.+++ +    +..+.+...
T Consensus       258 -------G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~----~~~~~LT~~  326 (353)
T PF00930_consen  258 -------GYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSG----GEPKCLTCE  326 (353)
T ss_dssp             -------SSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTET----TEEEESSTT
T ss_pred             -------CCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCC----CCeEeccCC
Confidence                   2567999999887766655443333 346788888999998765    4589999887 5    444555433


Q ss_pred             CCCCC-ceeeCCCCCEEEEecc
Q 019290          246 PRFPD-NIKSDSKGEFWIAMNS  266 (343)
Q Consensus       246 ~~~p~-~i~~d~~G~lwi~~~~  266 (343)
                      .+ .. ...++++|+.++-...
T Consensus       327 ~~-~~~~~~~Spdg~y~v~~~s  347 (353)
T PF00930_consen  327 DG-DHYSASFSPDGKYYVDTYS  347 (353)
T ss_dssp             SS-TTEEEEE-TTSSEEEEEEE
T ss_pred             CC-CceEEEECCCCCEEEEEEc
Confidence            32 33 6788999988876544

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=95.60  E-value=1.9  Score=39.84  Aligned_cols=151  Identities=20%  Similarity=0.175  Sum_probs=85.4

Q ss_pred             eEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCCCe
Q 019290           39 SLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFG  118 (343)
Q Consensus        39 ~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~~g  118 (343)
                      ++++++||..+.++..+..+..|+.++.+....                   +....+.+.+++|-.....||.+....+
T Consensus       207 ~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~-------------------~~ghr~~V~~L~fr~gt~~lys~s~Drs  267 (479)
T KOG0299|consen  207 TLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKV-------------------FKGHRGAVSSLAFRKGTSELYSASADRS  267 (479)
T ss_pred             EEEEcCCCcEEEecCCCceEEEecCcccchhhc-------------------ccccccceeeeeeecCccceeeeecCCc
Confidence            788899999555666666677898887543221                   1123345678999876778999976677


Q ss_pred             EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEeec
Q 019290          119 LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYN  198 (343)
Q Consensus       119 i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~  198 (343)
                      +-.++.+.-...   ....+.+ ..+.+|..-.. .+.. +..++              ..+-++|.+ ++.-+. .+..
T Consensus       268 vkvw~~~~~s~v---etlyGHq-d~v~~IdaL~r-eR~v-tVGgr--------------DrT~rlwKi-~eesql-ifrg  325 (479)
T KOG0299|consen  268 VKVWSIDQLSYV---ETLYGHQ-DGVLGIDALSR-ERCV-TVGGR--------------DRTVRLWKI-PEESQL-IFRG  325 (479)
T ss_pred             eEEEehhHhHHH---HHHhCCc-cceeeechhcc-cceE-Eeccc--------------cceeEEEec-ccccee-eeeC
Confidence            888887642211   1111111 12333332222 3322 11110              113456666 221121 2233


Q ss_pred             CCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290          199 GLSFPNGVALSNNNSFLLLAESATLKILRFWLQG  232 (343)
Q Consensus       199 ~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~  232 (343)
                      +-..+..+++-.+..  +++.+.+|.|..|++..
T Consensus       326 ~~~sidcv~~In~~H--fvsGSdnG~IaLWs~~K  357 (479)
T KOG0299|consen  326 GEGSIDCVAFINDEH--FVSGSDNGSIALWSLLK  357 (479)
T ss_pred             CCCCeeeEEEecccc--eeeccCCceEEEeeecc
Confidence            334677788865554  66888899999999754

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=95.59  E-value=2.5  Score=41.15  Aligned_cols=175  Identities=13%  Similarity=0.048  Sum_probs=88.9

Q ss_pred             EEEc-CCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCCCe
Q 019290           40 LAFD-CNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFG  118 (343)
Q Consensus        40 l~~d-~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~~g  118 (343)
                      +|+. .++..++++.++..+..|...+..-..+.                   ......+.++.... ++.+.-+.+...
T Consensus        64 i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~L-------------------kgH~snVC~ls~~~-~~~~iSgSWD~T  123 (745)
T KOG0301|consen   64 ICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTL-------------------KGHKSNVCSLSIGE-DGTLISGSWDST  123 (745)
T ss_pred             ceeccccCcceEeecccceEEEEecCCCCchhhh-------------------hccccceeeeecCC-cCceEecccccc
Confidence            5555 45445888888888888877654311111                   12223455666565 566554433332


Q ss_pred             EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEeec
Q 019290          119 LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYN  198 (343)
Q Consensus       119 i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~  198 (343)
                      +.++-..  +....   ..+. ...+-.++.-++ + .|++.+.                 ...|..|... ...+.+..
T Consensus       124 akvW~~~--~l~~~---l~gH-~asVWAv~~l~e-~-~~vTgsa-----------------DKtIklWk~~-~~l~tf~g  177 (745)
T KOG0301|consen  124 AKVWRIG--ELVYS---LQGH-TASVWAVASLPE-N-TYVTGSA-----------------DKTIKLWKGG-TLLKTFSG  177 (745)
T ss_pred             eEEecch--hhhcc---cCCc-chheeeeeecCC-C-cEEeccC-----------------cceeeeccCC-chhhhhcc
Confidence            3333221  11111   1111 123445556663 5 6776554                 3345555432 23344444


Q ss_pred             CCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEecc
Q 019290          199 GLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNS  266 (343)
Q Consensus       199 ~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~~  266 (343)
                      +.....++++-++...|-+  .+++.|..|++++..    ...+.....+...+....++.+.+++..
T Consensus       178 HtD~VRgL~vl~~~~flSc--sNDg~Ir~w~~~ge~----l~~~~ghtn~vYsis~~~~~~~Ivs~gE  239 (745)
T KOG0301|consen  178 HTDCVRGLAVLDDSHFLSC--SNDGSIRLWDLDGEV----LLEMHGHTNFVYSISMALSDGLIVSTGE  239 (745)
T ss_pred             chhheeeeEEecCCCeEee--cCCceEEEEeccCce----eeeeeccceEEEEEEecCCCCeEEEecC
Confidence            4455789999888776544  457889999987632    2222111122223332334557777766

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.55  E-value=1.8  Score=41.63  Aligned_cols=166  Identities=12%  Similarity=0.076  Sum_probs=99.1

Q ss_pred             ccccCCCCCCCceEEEcCCCCeeEEEecCCEEEEEEcCCCC-eEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeC
Q 019290           27 QQLQLPGVVGPESLAFDCNGEGPYVGVSDGRILKWKAANSG-WTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNP  105 (343)
Q Consensus        27 ~~~~~~~~~~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~  105 (343)
                      +.+++...+- +.-.+-...+.+.++..+.+|..|+.+|.+ ++.|.                    ........|+++|
T Consensus        49 ksfeV~~~Pv-Ra~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~Fe--------------------AH~DyIR~iavHP  107 (794)
T KOG0276|consen   49 KSFEVSEVPV-RAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFE--------------------AHSDYIRSIAVHP  107 (794)
T ss_pred             eeeeecccch-hhheeeeccceEEEecCCceEEEEecccceeeEEee--------------------ccccceeeeeecC
Confidence            4555544322 333444556756688899999999998864 33442                    2333567888998


Q ss_pred             CCCeEEEEeCCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEE
Q 019290          106 VTCDLYIADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLK  185 (343)
Q Consensus       106 ~~~~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~  185 (343)
                      .+-.++-+....-|-.+|-+. .+... +..++. ...+.++++.|+|.+-+++..-               ...-+||.
T Consensus       108 t~P~vLtsSDDm~iKlW~we~-~wa~~-qtfeGH-~HyVMqv~fnPkD~ntFaS~sL---------------DrTVKVWs  169 (794)
T KOG0276|consen  108 TLPYVLTSSDDMTIKLWDWEN-EWACE-QTFEGH-EHYVMQVAFNPKDPNTFASASL---------------DRTVKVWS  169 (794)
T ss_pred             CCCeEEecCCccEEEEeeccC-ceeee-eEEcCc-ceEEEEEEecCCCccceeeeec---------------cccEEEEE
Confidence            444455443223355666653 33321 222332 2568899999987777775542               11445676


Q ss_pred             EeCCCCceEEeecCCCCcceeEEecCCCE-EEEEEcCCCeEEEEEccC
Q 019290          186 YDPLKKNVTVMYNGLSFPNGVALSNNNSF-LLLAESATLKILRFWLQG  232 (343)
Q Consensus       186 ~d~~~~~~~~~~~~~~~~~~i~~~~d~~~-lyv~~~~~~~i~~~~~~~  232 (343)
                      +......+ ++...-.+.|.+++.+.|.. ..++...+..|-+||.++
T Consensus       170 lgs~~~nf-Tl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQt  216 (794)
T KOG0276|consen  170 LGSPHPNF-TLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQT  216 (794)
T ss_pred             cCCCCCce-eeeccccCcceEEeccCCCcceEEecCCCceEEEeecch
Confidence            65433333 44555677899988775543 345667778888898765

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=95.53  E-value=2  Score=39.67  Aligned_cols=144  Identities=17%  Similarity=0.248  Sum_probs=78.5

Q ss_pred             EcCCCCeeEEEecCCEEEEEEcCCCC--eEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCCCe-
Q 019290           42 FDCNGEGPYVGVSDGRILKWKAANSG--WTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFG-  118 (343)
Q Consensus        42 ~d~~g~~l~~~~~~g~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~~g-  118 (343)
                      .+.+|+ +|+...+|.|+.+|+.++.  |..-..                   .......+-.+.. +|+||+++ ..| 
T Consensus        65 ~~~dg~-v~~~~~~G~i~A~d~~~g~~~W~~~~~-------------------~~~~~~~~~~~~~-~G~i~~g~-~~g~  122 (370)
T COG1520          65 ADGDGT-VYVGTRDGNIFALNPDTGLVKWSYPLL-------------------GAVAQLSGPILGS-DGKIYVGS-WDGK  122 (370)
T ss_pred             EeeCCe-EEEecCCCcEEEEeCCCCcEEecccCc-------------------CcceeccCceEEe-CCeEEEec-ccce
Confidence            566777 7777788899999998865  221110                   0001112222233 68899996 556 


Q ss_pred             EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEee-
Q 019290          119 LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMY-  197 (343)
Q Consensus       119 i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~-  197 (343)
                      ++.+|.++|+......... .  ....+-++-. ++.+|+...                  .+.++.++.++|+..-.. 
T Consensus       123 ~y~ld~~~G~~~W~~~~~~-~--~~~~~~~v~~-~~~v~~~s~------------------~g~~~al~~~tG~~~W~~~  180 (370)
T COG1520         123 LYALDASTGTLVWSRNVGG-S--PYYASPPVVG-DGTVYVGTD------------------DGHLYALNADTGTLKWTYE  180 (370)
T ss_pred             EEEEECCCCcEEEEEecCC-C--eEEecCcEEc-CcEEEEecC------------------CCeEEEEEccCCcEEEEEe
Confidence            9999997787665433222 0  1112223334 488888641                  356888887766653211 


Q ss_pred             -c---CCCCcceeEEecCCCEEEEEEcC-CCeEEEEEcc
Q 019290          198 -N---GLSFPNGVALSNNNSFLLLAESA-TLKILRFWLQ  231 (343)
Q Consensus       198 -~---~~~~~~~i~~~~d~~~lyv~~~~-~~~i~~~~~~  231 (343)
                       .   ......... . ....+|+.... ++.++.++..
T Consensus       181 ~~~~~~~~~~~~~~-~-~~~~vy~~~~~~~~~~~a~~~~  217 (370)
T COG1520         181 TPAPLSLSIYGSPA-I-ASGTVYVGSDGYDGILYALNAE  217 (370)
T ss_pred             cCCccccccccCce-e-ecceEEEecCCCcceEEEEEcc
Confidence             1   111111222 2 23457776542 4478888874

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=95.50  E-value=1.7  Score=40.71  Aligned_cols=116  Identities=14%  Similarity=0.092  Sum_probs=76.1

Q ss_pred             CCeeeEEEeCCCCeEEEEeCCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeee
Q 019290           96 GRPLGIKFNPVTCDLYIADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIA  175 (343)
Q Consensus        96 ~~p~gi~~~~~~~~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~  175 (343)
                      +......+.++++.|.++.....+-.+|+..-..+.-......  ...+..+++.+ |-++-|+--+             
T Consensus       466 nyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltss--apaCyALa~sp-DakvcFsccs-------------  529 (705)
T KOG0639|consen  466 NYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSS--APACYALAISP-DAKVCFSCCS-------------  529 (705)
T ss_pred             cceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCc--chhhhhhhcCC-ccceeeeecc-------------
Confidence            3456777888567788885545588888875443322222111  13467788888 6888886544             


Q ss_pred             ecCCCceEEEEeCCCCce-EEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290          176 TGDRSGRLLKYDPLKKNV-TVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQG  232 (343)
Q Consensus       176 ~~~~~~~v~~~d~~~~~~-~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~  232 (343)
                          .|.|..||.....+ +.+...-.....|.+++||..|| +.--+++|..||+..
T Consensus       530 ----dGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklW-TGGlDntvRcWDlre  582 (705)
T KOG0639|consen  530 ----DGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLW-TGGLDNTVRCWDLRE  582 (705)
T ss_pred             ----CCcEEEEEcccceeeecccCCCCCceeEEecCCCceee-cCCCccceeehhhhh
Confidence                56788888764433 33333445678899999987654 555688999999865

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.48  E-value=1.5  Score=37.79  Aligned_cols=151  Identities=13%  Similarity=0.028  Sum_probs=83.7

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCC-cCCeeeEEEeCCCCeEEEEe
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPL-CGRPLGIKFNPVTCDLYIAD  114 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~gi~~~~~~~~l~v~~  114 (343)
                      +|--++-|. .+.+|++.+.+++...|+.++++.-                     +.. ..+..+-+.-- ++.+.++-
T Consensus        14 spLVV~~ds-kT~v~igSHs~~~~avd~~sG~~~W---------------------e~ilg~RiE~sa~vv-gdfVV~GC   70 (354)
T KOG4649|consen   14 SPLVVCNDS-KTLVVIGSHSGIVIAVDPQSGNLIW---------------------EAILGVRIECSAIVV-GDFVVLGC   70 (354)
T ss_pred             CcEEEecCC-ceEEEEecCCceEEEecCCCCcEEe---------------------ehhhCceeeeeeEEE-CCEEEEEE
Confidence            344444444 4558899999999999998876431                     111 11222222222 45677775


Q ss_pred             CCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceE
Q 019290          115 AYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVT  194 (343)
Q Consensus       115 ~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~  194 (343)
                      ...++|.++.++|..-+.....+.    --.....|...|-+|.+..                  .+..|.+|+.+..-.
T Consensus        71 y~g~lYfl~~~tGs~~w~f~~~~~----vk~~a~~d~~~glIycgsh------------------d~~~yalD~~~~~cV  128 (354)
T KOG4649|consen   71 YSGGLYFLCVKTGSQIWNFVILET----VKVRAQCDFDGGLIYCGSH------------------DGNFYALDPKTYGCV  128 (354)
T ss_pred             ccCcEEEEEecchhheeeeeehhh----hccceEEcCCCceEEEecC------------------CCcEEEecccccceE
Confidence            445699999998842222111111    0122345553356676432                  456888887643321


Q ss_pred             -EeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290          195 -VMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQG  232 (343)
Q Consensus       195 -~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~  232 (343)
                       ....++....+-++++-...||++.+ .+.+.+.+...
T Consensus       129 ykskcgG~~f~sP~i~~g~~sly~a~t-~G~vlavt~~~  166 (354)
T KOG4649|consen  129 YKSKCGGGTFVSPVIAPGDGSLYAAIT-AGAVLAVTKNP  166 (354)
T ss_pred             EecccCCceeccceecCCCceEEEEec-cceEEEEccCC
Confidence             12223344455566664456999865 67888877654

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=95.45  E-value=3  Score=41.13  Aligned_cols=110  Identities=15%  Similarity=0.177  Sum_probs=62.3

Q ss_pred             ccccccccCCCC-CCCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeE
Q 019290           23 SKSYQQLQLPGV-VGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGI  101 (343)
Q Consensus        23 ~~~~~~~~~~~~-~~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi  101 (343)
                      +.....++.++- ....++++..+.. +..+..++.+-.|+..+.+..+=                     -+++...+.
T Consensus       361 ~~~~~~i~~~GHR~dVRsl~vS~d~~-~~~Sga~~SikiWn~~t~kciRT---------------------i~~~y~l~~  418 (888)
T KOG0306|consen  361 ADRTSNIEIGGHRSDVRSLCVSSDSI-LLASGAGESIKIWNRDTLKCIRT---------------------ITCGYILAS  418 (888)
T ss_pred             ccccceeeeccchhheeEEEeecCce-eeeecCCCcEEEEEccCcceeEE---------------------eccccEEEE
Confidence            344555777632 2478999998877 44444667788898876443211                     123356677


Q ss_pred             EEeCCCCeEEEEeCCCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEe
Q 019290          102 KFNPVTCDLYIADAYFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTD  160 (343)
Q Consensus       102 ~~~~~~~~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~  160 (343)
                      .+-|.+..+.++ +.+| +..||..+...-......+    ..+-+++..| |+.=+++.
T Consensus       419 ~Fvpgd~~Iv~G-~k~Gel~vfdlaS~~l~Eti~AHd----gaIWsi~~~p-D~~g~vT~  472 (888)
T KOG0306|consen  419 KFVPGDRYIVLG-TKNGELQVFDLASASLVETIRAHD----GAIWSISLSP-DNKGFVTG  472 (888)
T ss_pred             EecCCCceEEEe-ccCCceEEEEeehhhhhhhhhccc----cceeeeeecC-CCCceEEe
Confidence            777745556666 4566 8888876544322222111    2345556656 35544443

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=95.38  E-value=1.3  Score=39.99  Aligned_cols=173  Identities=16%  Similarity=0.194  Sum_probs=104.2

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccc-cccCCCCCcc-----cCCCcCCeeeEEEeCCCCe
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAR-EICDGSTNTT-----LEPLCGRPLGIKFNPVTCD  109 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~p~gi~~~~~~~~  109 (343)
                      ..+++..+++|..+..+..+..|-.|+..+.....+......+.. ....+.+..+     .......+-.+.+.+ ...
T Consensus       195 ~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v  273 (423)
T KOG0313|consen  195 SVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATV  273 (423)
T ss_pred             ceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCc
Confidence            478999999999888888888888888433333333222110000 0000000000     000111233455665 677


Q ss_pred             EEEEeCCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCC
Q 019290          110 LYIADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPL  189 (343)
Q Consensus       110 l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~  189 (343)
                      +|-+...+-|..+|+++++...-....     ..++.+...+ ...|.++..+                 ...+..+||.
T Consensus       274 ~yS~SwDHTIk~WDletg~~~~~~~~~-----ksl~~i~~~~-~~~Ll~~gss-----------------dr~irl~DPR  330 (423)
T KOG0313|consen  274 IYSVSWDHTIKVWDLETGGLKSTLTTN-----KSLNCISYSP-LSKLLASGSS-----------------DRHIRLWDPR  330 (423)
T ss_pred             eEeecccceEEEEEeecccceeeeecC-----cceeEeeccc-ccceeeecCC-----------------CCceeecCCC
Confidence            888766667999999988654322211     3467788888 4777775543                 3346678987


Q ss_pred             CCceEE----eecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290          190 KKNVTV----MYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQG  232 (343)
Q Consensus       190 ~~~~~~----~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~  232 (343)
                      ++.-..    +...-....++..+|...+.+++.+.++.+..||...
T Consensus       331 ~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS  377 (423)
T KOG0313|consen  331 TGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRS  377 (423)
T ss_pred             CCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEecc
Confidence            654332    2333345677888888888999999999999999764

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=95.27  E-value=2.4  Score=39.74  Aligned_cols=130  Identities=13%  Similarity=0.012  Sum_probs=72.2

Q ss_pred             CceEEEEeCCCCceEEeecCC--CCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeec-CCCCCCceeeCC
Q 019290          180 SGRLLKYDPLKKNVTVMYNGL--SFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAE-MPRFPDNIKSDS  256 (343)
Q Consensus       180 ~~~v~~~d~~~~~~~~~~~~~--~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~  256 (343)
                      .|.|......++....-....  ....-+.+++..+.|..+....|.|..||..+...   +-.+.+ -..-..|+|+.+
T Consensus       142 gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp---~~~~~~~HsAP~~gicfsp  218 (673)
T KOG4378|consen  142 GGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSP---IFHASEAHSAPCRGICFSP  218 (673)
T ss_pred             CCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCc---ccchhhhccCCcCcceecC
Confidence            455666666655443222111  12234566777788888878899999999876322   111111 112247899999


Q ss_pred             CCCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECCCCCE-E--EEeeCCCCCccCCceeEEE-eCCEEEEec
Q 019290          257 KGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNV-V--DVLDGNEGNTLNSVSEVQE-YGEYLYTGS  332 (343)
Q Consensus       257 ~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~-~--~~~~~~~~~~~~~~~~~~~-~~g~l~i~~  332 (343)
                      .....+++.+  .                     ...|+-||..-+. .  ..+..       ..+.+.. ..|.+..++
T Consensus       219 sne~l~vsVG--~---------------------Dkki~~yD~~s~~s~~~l~y~~-------Plstvaf~~~G~~L~aG  268 (673)
T KOG4378|consen  219 SNEALLVSVG--Y---------------------DKKINIYDIRSQASTDRLTYSH-------PLSTVAFSECGTYLCAG  268 (673)
T ss_pred             CccceEEEec--c---------------------cceEEEeecccccccceeeecC-------CcceeeecCCceEEEee
Confidence            8876666554  2                     2367777754221 1  11222       2223322 366666666


Q ss_pred             CCCCeEEEEc
Q 019290          333 SVQPYVVVIK  342 (343)
Q Consensus       333 ~~~~~i~~~~  342 (343)
                      ....+++.||
T Consensus       269 ~s~G~~i~YD  278 (673)
T KOG4378|consen  269 NSKGELIAYD  278 (673)
T ss_pred             cCCceEEEEe
Confidence            6677777775

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=95.27  E-value=2.1  Score=38.44  Aligned_cols=189  Identities=12%  Similarity=0.072  Sum_probs=101.1

Q ss_pred             CceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCC-eEEEEeC
Q 019290           37 PESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTC-DLYIADA  115 (343)
Q Consensus        37 p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~-~l~v~~~  115 (343)
                      ...+++.+.=..+-++.++.-|..|+.+....+.++.                   ........++..|-.. .+-|+ .
T Consensus       101 lr~~aWhqH~~~fava~nddvVriy~ksst~pt~Lks-------------------~sQrnvtclawRPlsaselavg-C  160 (445)
T KOG2139|consen  101 LRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKLKS-------------------VSQRNVTCLAWRPLSASELAVG-C  160 (445)
T ss_pred             eeeEeechhhhhhhhhccCcEEEEeccCCCCCceecc-------------------hhhcceeEEEeccCCcceeeee-e
Confidence            4566666632222355677778888877654444321                   1122344566655222 34455 4


Q ss_pred             CCeEEEEeCC-CCeEEE---cc-----cccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEE
Q 019290          116 YFGLMVVGPN-GGQAQQ---LA-----SSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKY  186 (343)
Q Consensus       116 ~~gi~~~d~~-~~~~~~---~~-----~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~  186 (343)
                      ..||..+..+ +....+   ..     +.........+.++...+ ||..|++.+-.                ...+..+
T Consensus       161 r~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~-dgt~l~tAS~g----------------sssi~iW  223 (445)
T KOG2139|consen  161 RAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNE-DGTILVTASFG----------------SSSIMIW  223 (445)
T ss_pred             cceeEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcC-CCCEEeecccC----------------cceEEEE
Confidence            5665444321 111111   10     111222234566777777 68888876531                3457888


Q ss_pred             eCCCCceEEee-cCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCC-EEEEe
Q 019290          187 DPLKKNVTVMY-NGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGE-FWIAM  264 (343)
Q Consensus       187 d~~~~~~~~~~-~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-lwi~~  264 (343)
                      |++++....+. .++....-+.++||+..++.+.. +.....|....... .+  ...-..+...+-+-+++|+ |.++.
T Consensus       224 dpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~-davfrlw~e~q~wt-~e--rw~lgsgrvqtacWspcGsfLLf~~  299 (445)
T KOG2139|consen  224 DPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATC-DAVFRLWQENQSWT-KE--RWILGSGRVQTACWSPCGSFLLFAC  299 (445)
T ss_pred             cCCCCCcccccccCCCceeeEEEcCCCCEEEEecc-cceeeeehhcccce-ec--ceeccCCceeeeeecCCCCEEEEEE
Confidence            98888776655 44555667889999998777643 44444554432222 22  2222344455567789885 55555


Q ss_pred             cc
Q 019290          265 NS  266 (343)
Q Consensus       265 ~~  266 (343)
                      ..
T Consensus       300 sg  301 (445)
T KOG2139|consen  300 SG  301 (445)
T ss_pred             cC
Confidence            54

>PRK13684 Ycf48-like protein; Provisional

Probab=95.23  E-value=2.3  Score=38.66  Aligned_cols=188  Identities=12%  Similarity=-0.004  Sum_probs=90.8

Q ss_pred             eeeEEEeCCCCeEEEEeCCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeec
Q 019290           98 PLGIKFNPVTCDLYIADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATG  177 (343)
Q Consensus        98 p~gi~~~~~~~~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~  177 (343)
                      +..+.... .+.+|++.....|++-+-.+..++.+....    ...++++..++ ++.+++...                
T Consensus       134 ~~~i~~~~-~~~~~~~g~~G~i~~S~DgG~tW~~~~~~~----~g~~~~i~~~~-~g~~v~~g~----------------  191 (334)
T PRK13684        134 PYLITALG-PGTAEMATNVGAIYRTTDGGKNWEALVEDA----AGVVRNLRRSP-DGKYVAVSS----------------  191 (334)
T ss_pred             ceEEEEEC-CCcceeeeccceEEEECCCCCCceeCcCCC----cceEEEEEECC-CCeEEEEeC----------------
Confidence            34444443 455676643334666554444555543221    23577888888 476665332                


Q ss_pred             CCCceEEEEeCCCC-ceEEeecC-CCCcceeEEecCCCEEEEEEcCCCeEEEEE-ccCccccccceeee-c-C-C-CCCC
Q 019290          178 DRSGRLLKYDPLKK-NVTVMYNG-LSFPNGVALSNNNSFLLLAESATLKILRFW-LQGERTTYTPQLFA-E-M-P-RFPD  250 (343)
Q Consensus       178 ~~~~~v~~~d~~~~-~~~~~~~~-~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~-~~~~~~~~~~~~~~-~-~-~-~~p~  250 (343)
                        .|.+++-..+.+ ..+.+... .....++++.++++ +++... .+.+ ++. .++.   ...+... . . . ....
T Consensus       192 --~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~-~~~vg~-~G~~-~~~s~d~G---~sW~~~~~~~~~~~~~l~  263 (334)
T PRK13684        192 --RGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGN-LWMLAR-GGQI-RFNDPDDL---ESWSKPIIPEITNGYGYL  263 (334)
T ss_pred             --CceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCC-EEEEec-CCEE-EEccCCCC---CccccccCCcccccccee
Confidence              345665422223 34433322 23457778877776 555543 3444 442 3321   1111111 0 0 0 0123


Q ss_pred             ceeeCCCCCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECCCCCEEEEeeCCCCCccCCceeEE-EeCCEEE
Q 019290          251 NIKSDSKGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEGNTLNSVSEVQ-EYGEYLY  329 (343)
Q Consensus       251 ~i~~d~~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~~~~~~~~~~~~-~~~g~l~  329 (343)
                      .+.+.+++.+|++...                         +.+++-...|+.-.....+.... .....+. .+++++|
T Consensus       264 ~v~~~~~~~~~~~G~~-------------------------G~v~~S~d~G~tW~~~~~~~~~~-~~~~~~~~~~~~~~~  317 (334)
T PRK13684        264 DLAYRTPGEIWAGGGN-------------------------GTLLVSKDGGKTWEKDPVGEEVP-SNFYKIVFLDPEKGF  317 (334)
T ss_pred             eEEEcCCCCEEEEcCC-------------------------CeEEEeCCCCCCCeECCcCCCCC-cceEEEEEeCCCceE
Confidence            4566778899998765                         34554434456545443222322 2343333 3467777


Q ss_pred             EecCCCCeEEEEc
Q 019290          330 TGSSVQPYVVVIK  342 (343)
Q Consensus       330 i~~~~~~~i~~~~  342 (343)
                      +.+.. ..|++++
T Consensus       318 ~~G~~-G~il~~~  329 (334)
T PRK13684        318 VLGQR-GVLLRYV  329 (334)
T ss_pred             EECCC-ceEEEec
Confidence            65443 3465554

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=95.23  E-value=1.7  Score=37.00  Aligned_cols=111  Identities=16%  Similarity=0.189  Sum_probs=65.7

Q ss_pred             CeeeEEEeCCCCeEEEEeCCCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeee
Q 019290           97 RPLGIKFNPVTCDLYIADAYFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIA  175 (343)
Q Consensus        97 ~p~gi~~~~~~~~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~  175 (343)
                      ..+.|.++|..|.++++. +++ ++.+|+++|+++.......    ..++.++-....+.++-+                
T Consensus       116 eINam~ldP~enSi~~Ag-GD~~~y~~dlE~G~i~r~~rGHt----DYvH~vv~R~~~~qilsG----------------  174 (325)
T KOG0649|consen  116 EINAMWLDPSENSILFAG-GDGVIYQVDLEDGRIQREYRGHT----DYVHSVVGRNANGQILSG----------------  174 (325)
T ss_pred             ccceeEeccCCCcEEEec-CCeEEEEEEecCCEEEEEEcCCc----ceeeeeeecccCcceeec----------------
Confidence            467899998889999995 666 9999999999987654433    346676653323555442                


Q ss_pred             ecCCCceEEEEeCCCCceEEeecCC-----CCc-ce---eEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290          176 TGDRSGRLLKYDPLKKNVTVMYNGL-----SFP-NG---VALSNNNSFLLLAESATLKILRFWLQG  232 (343)
Q Consensus       176 ~~~~~~~v~~~d~~~~~~~~~~~~~-----~~~-~~---i~~~~d~~~lyv~~~~~~~i~~~~~~~  232 (343)
                        ...|.+..+|.++++-.......     ..| ++   .|+.-+...|.+.  .+..+..|++..
T Consensus       175 --~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCG--gGp~lslwhLrs  236 (325)
T KOG0649|consen  175 --AEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCG--GGPKLSLWHLRS  236 (325)
T ss_pred             --CCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEec--CCCceeEEeccC
Confidence              22456777787766543222111     111 11   2344445544443  345566676654

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=95.22  E-value=2.2  Score=38.34  Aligned_cols=91  Identities=16%  Similarity=0.168  Sum_probs=56.8

Q ss_pred             EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEE-eCCCCce-EEe
Q 019290          119 LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKY-DPLKKNV-TVM  196 (343)
Q Consensus       119 i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~-d~~~~~~-~~~  196 (343)
                      |+.+|..+-+.........    ..+-.+++++ +|.+..+.+.                 +|.|.|+ ....|+. ..+
T Consensus       155 V~l~d~~nl~~v~~I~aH~----~~lAalafs~-~G~llATASe-----------------KGTVIRVf~v~~G~kl~eF  212 (391)
T KOG2110|consen  155 VVLFDTINLQPVNTINAHK----GPLAALAFSP-DGTLLATASE-----------------KGTVIRVFSVPEGQKLYEF  212 (391)
T ss_pred             EEEEEcccceeeeEEEecC----CceeEEEECC-CCCEEEEecc-----------------CceEEEEEEcCCccEeeee
Confidence            8888876533222222222    3466789999 6999887765                 5565553 4444543 222


Q ss_pred             ecCC--CCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290          197 YNGL--SFPNGVALSNNNSFLLLAESATLKILRFWLQG  232 (343)
Q Consensus       197 ~~~~--~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~  232 (343)
                      -.+.  .....++|++++..|-++ +..++|.+|.++.
T Consensus       213 RRG~~~~~IySL~Fs~ds~~L~~s-S~TeTVHiFKL~~  249 (391)
T KOG2110|consen  213 RRGTYPVSIYSLSFSPDSQFLAAS-SNTETVHIFKLEK  249 (391)
T ss_pred             eCCceeeEEEEEEECCCCCeEEEe-cCCCeEEEEEecc
Confidence            2221  235678999999877665 4678999998764

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=95.11  E-value=2.8  Score=39.02  Aligned_cols=131  Identities=11%  Similarity=-0.039  Sum_probs=65.7

Q ss_pred             CceEEEEeCCCCc-eEEee-cCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecC--CC---CCCce
Q 019290          180 SGRLLKYDPLKKN-VTVMY-NGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEM--PR---FPDNI  252 (343)
Q Consensus       180 ~~~v~~~d~~~~~-~~~~~-~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~~---~p~~i  252 (343)
                      .|.+++-...+.. ...+. .......++.+.+++. ++++. ..+.+++-+.++..  -+...+.+.  +.   ....+
T Consensus       258 ~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~-l~l~g-~~G~l~~S~d~G~~--~~~~~f~~~~~~~~~~~l~~v  333 (398)
T PLN00033        258 RGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGG-LWLLT-RGGGLYVSKGTGLT--EEDFDFEEADIKSRGFGILDV  333 (398)
T ss_pred             CccEEEecCCCCcceEEecCCCccceeeeeEcCCCC-EEEEe-CCceEEEecCCCCc--ccccceeecccCCCCcceEEE
Confidence            3556665444333 23222 2223456777777776 55554 35667665433311  000012211  11   12335


Q ss_pred             eeCCCCCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECCCCCEEEEeeCCCCCccCCceeEE-EeCCEEEEe
Q 019290          253 KSDSKGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEGNTLNSVSEVQ-EYGEYLYTG  331 (343)
Q Consensus       253 ~~d~~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~~~~~~~~~~~~-~~~g~l~i~  331 (343)
                      ...+++.+|++...                         +.+++-...|+.-......++ .....+.+. .++++.|+.
T Consensus       334 ~~~~d~~~~a~G~~-------------------------G~v~~s~D~G~tW~~~~~~~~-~~~~ly~v~f~~~~~g~~~  387 (398)
T PLN00033        334 GYRSKKEAWAAGGS-------------------------GILLRSTDGGKSWKRDKGADN-IAANLYSVKFFDDKKGFVL  387 (398)
T ss_pred             EEcCCCcEEEEECC-------------------------CcEEEeCCCCcceeEccccCC-CCcceeEEEEcCCCceEEE
Confidence            56778999999876                         244444456766555432222 122334444 446888887


Q ss_pred             cCCCCeEEEE
Q 019290          332 SSVQPYVVVI  341 (343)
Q Consensus       332 ~~~~~~i~~~  341 (343)
                      +.+. .|+||
T Consensus       388 G~~G-~il~~  396 (398)
T PLN00033        388 GNDG-VLLRY  396 (398)
T ss_pred             eCCc-EEEEe
Confidence            7554 35555

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=95.05  E-value=1.8  Score=40.55  Aligned_cols=112  Identities=14%  Similarity=0.128  Sum_probs=66.1

Q ss_pred             eeEEEeCCCCeEEEEeCCCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeec
Q 019290           99 LGIKFNPVTCDLYIADAYFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATG  177 (343)
Q Consensus        99 ~gi~~~~~~~~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~  177 (343)
                      .-+.+++.++.++.....+| |..+|..+.....-+.....   .-..+|++.|- +...+..-+.              
T Consensus       168 Rll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~Hs---AP~~gicfsps-ne~l~vsVG~--------------  229 (673)
T KOG4378|consen  168 RLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHS---APCRGICFSPS-NEALLVSVGY--------------  229 (673)
T ss_pred             EEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhcc---CCcCcceecCC-ccceEEEecc--------------
Confidence            35667775666666655677 77888764322111111122   23678999985 5544433221              


Q ss_pred             CCCceEEEEeCCCCceE-EeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290          178 DRSGRLLKYDPLKKNVT-VMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQG  232 (343)
Q Consensus       178 ~~~~~v~~~d~~~~~~~-~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~  232 (343)
                        ..+|+.||....... ++.. -.....++|.++|.+| ++.+..|+|+.||+.+
T Consensus       230 --Dkki~~yD~~s~~s~~~l~y-~~Plstvaf~~~G~~L-~aG~s~G~~i~YD~R~  281 (673)
T KOG4378|consen  230 --DKKINIYDIRSQASTDRLTY-SHPLSTVAFSECGTYL-CAGNSKGELIAYDMRS  281 (673)
T ss_pred             --cceEEEeecccccccceeee-cCCcceeeecCCceEE-EeecCCceEEEEeccc
Confidence              467999997643322 2221 1224678898888654 5566789999999865

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=95.04  E-value=1.9  Score=36.67  Aligned_cols=74  Identities=15%  Similarity=0.234  Sum_probs=49.3

Q ss_pred             CccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEeecCCC-CcceeEE-ecCCCEEEE
Q 019290          140 PFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLS-FPNGVAL-SNNNSFLLL  217 (343)
Q Consensus       140 ~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~i~~-~~d~~~lyv  217 (343)
                      +..-+|.+.+||..|.++++.                  +.+.+|.+|.++|++++...+-. ..-.++. ...++  +.
T Consensus       113 evPeINam~ldP~enSi~~Ag------------------GD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~q--il  172 (325)
T KOG0649|consen  113 EVPEINAMWLDPSENSILFAG------------------GDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQ--IL  172 (325)
T ss_pred             cCCccceeEeccCCCcEEEec------------------CCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcc--ee
Confidence            345689999998668888844                  25679999999999876543322 1222322 23344  34


Q ss_pred             EEcCCCeEEEEEccCc
Q 019290          218 AESATLKILRFWLQGE  233 (343)
Q Consensus       218 ~~~~~~~i~~~~~~~~  233 (343)
                      +...++.+..||..+.
T Consensus       173 sG~EDGtvRvWd~kt~  188 (325)
T KOG0649|consen  173 SGAEDGTVRVWDTKTQ  188 (325)
T ss_pred             ecCCCccEEEEecccc
Confidence            6667889999998764

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=95.02  E-value=2.5  Score=37.93  Aligned_cols=153  Identities=12%  Similarity=0.053  Sum_probs=89.3

Q ss_pred             CceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCC
Q 019290           37 PESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAY  116 (343)
Q Consensus        37 p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~  116 (343)
                      .-.+...|+.+...++..+..-+.|+..++++..-.                   ......+..+.|+- ++.++.+..-
T Consensus        67 vFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~el-------------------tgHKDSVt~~~Fsh-dgtlLATGdm  126 (399)
T KOG0296|consen   67 VFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGEL-------------------TGHKDSVTCCSFSH-DGTLLATGDM  126 (399)
T ss_pred             eEEEEeCCCCceEEecCCCceEEEEEccCCcceeEe-------------------cCCCCceEEEEEcc-CceEEEecCC
Confidence            456677786664446667778888888877632111                   11112345677776 6665554323


Q ss_pred             Ce-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCC-CceE
Q 019290          117 FG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLK-KNVT  194 (343)
Q Consensus       117 ~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~~~~  194 (343)
                      .| |+.+...++..+....    .+..-+.=+...|. +.+.++-.                 ..|.+|.|.... +..+
T Consensus       127 sG~v~v~~~stg~~~~~~~----~e~~dieWl~WHp~-a~illAG~-----------------~DGsvWmw~ip~~~~~k  184 (399)
T KOG0296|consen  127 SGKVLVFKVSTGGEQWKLD----QEVEDIEWLKWHPR-AHILLAGS-----------------TDGSVWMWQIPSQALCK  184 (399)
T ss_pred             CccEEEEEcccCceEEEee----cccCceEEEEeccc-ccEEEeec-----------------CCCcEEEEECCCcceee
Confidence            55 7777777766554322    11122333456674 66666433                 267899998765 3333


Q ss_pred             EeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290          195 VMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQG  232 (343)
Q Consensus       195 ~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~  232 (343)
                      .+.......+.=.+.|||+.+... ..++.|.+|++.+
T Consensus       185 v~~Gh~~~ct~G~f~pdGKr~~tg-y~dgti~~Wn~kt  221 (399)
T KOG0296|consen  185 VMSGHNSPCTCGEFIPDGKRILTG-YDDGTIIVWNPKT  221 (399)
T ss_pred             EecCCCCCcccccccCCCceEEEE-ecCceEEEEecCC
Confidence            333333333444577899876655 4589999999875

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=95.00  E-value=3  Score=38.72  Aligned_cols=152  Identities=15%  Similarity=0.146  Sum_probs=91.2

Q ss_pred             CCCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEe
Q 019290           35 VGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIAD  114 (343)
Q Consensus        35 ~~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~  114 (343)
                      ....+|++..+|+.|.++..+|.+..|+..+.....+.                    ...+.+..+.... +|+..++.
T Consensus       236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~--------------------~HkgPI~slKWnk-~G~yilS~  294 (524)
T KOG0273|consen  236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLISTLG--------------------QHKGPIFSLKWNK-KGTYILSG  294 (524)
T ss_pred             CCcceEEecCCCCeEEEeecCcEEEEEecCchhhhhhh--------------------ccCCceEEEEEcC-CCCEEEec
Confidence            35779999999998889999999999988775433321                    1223456777777 55443332


Q ss_pred             CCCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCC-CCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCc
Q 019290          115 AYFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPN-TGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKN  192 (343)
Q Consensus       115 ~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~-dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~  192 (343)
                      ...+ +..+|..+|.+.........     + .+.++.. +..+-.+...                +.-.|++++.++. 
T Consensus       295 ~vD~ttilwd~~~g~~~q~f~~~s~-----~-~lDVdW~~~~~F~ts~td----------------~~i~V~kv~~~~P-  351 (524)
T KOG0273|consen  295 GVDGTTILWDAHTGTVKQQFEFHSA-----P-ALDVDWQSNDEFATSSTD----------------GCIHVCKVGEDRP-  351 (524)
T ss_pred             cCCccEEEEeccCceEEEeeeeccC-----C-ccceEEecCceEeecCCC----------------ceEEEEEecCCCc-
Confidence            3444 78889888877654333221     1 2223321 1222221111                0234666665532 


Q ss_pred             eEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEcc
Q 019290          193 VTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQ  231 (343)
Q Consensus       193 ~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~  231 (343)
                      ...+...-...+++.+.+.+. |..+.+.++++-.|...
T Consensus       352 ~~t~~GH~g~V~alk~n~tg~-LLaS~SdD~TlkiWs~~  389 (524)
T KOG0273|consen  352 VKTFIGHHGEVNALKWNPTGS-LLASCSDDGTLKIWSMG  389 (524)
T ss_pred             ceeeecccCceEEEEECCCCc-eEEEecCCCeeEeeecC
Confidence            334444556688999998886 55666778889888854

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=94.96  E-value=2.7  Score=37.87  Aligned_cols=145  Identities=18%  Similarity=0.245  Sum_probs=87.6

Q ss_pred             eeeEEEeCCCCeEEEEeCC--CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeee
Q 019290           98 PLGIKFNPVTCDLYIADAY--FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIA  175 (343)
Q Consensus        98 p~gi~~~~~~~~l~v~~~~--~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~  175 (343)
                      +..|...+ ++..|+....  ..|..+|++++...++....    .....-+...| ||..+++..-             
T Consensus       198 Vtsmqwn~-dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~g----lgg~slLkwSP-dgd~lfaAt~-------------  258 (445)
T KOG2139|consen  198 VTSMQWNE-DGTILVTASFGSSSIMIWDPDTGQKIPLIPKG----LGGFSLLKWSP-DGDVLFAATC-------------  258 (445)
T ss_pred             eeEEEEcC-CCCEEeecccCcceEEEEcCCCCCcccccccC----CCceeeEEEcC-CCCEEEEecc-------------
Confidence            45777887 6777776433  34999999999887775221    13355678889 5776665532             


Q ss_pred             ecCCCceEEEEeCCCCce--EEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCcccc-------ccceeeecC-
Q 019290          176 TGDRSGRLLKYDPLKKNV--TVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTT-------YTPQLFAEM-  245 (343)
Q Consensus       176 ~~~~~~~v~~~d~~~~~~--~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~-------~~~~~~~~~-  245 (343)
                           ..++++=..+...  ++-..+.....+.+++|.|+.|.++-.....||....++....       .+...++++ 
T Consensus       259 -----davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~  333 (445)
T KOG2139|consen  259 -----DAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQ  333 (445)
T ss_pred             -----cceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccch
Confidence                 1244332111111  1111222356788899999999998888889988876643210       111222221 


Q ss_pred             -----------CCCCCceeeCCCCCEEEEecc
Q 019290          246 -----------PRFPDNIKSDSKGEFWIAMNS  266 (343)
Q Consensus       246 -----------~~~p~~i~~d~~G~lwi~~~~  266 (343)
                                 .+.+..|+-|+.|+.....-.
T Consensus       334 e~ti~ag~~l~cgeaq~lawDpsGeyLav~fK  365 (445)
T KOG2139|consen  334 EVTICAGQRLCCGEAQCLAWDPSGEYLAVIFK  365 (445)
T ss_pred             hhhhhcCcccccCccceeeECCCCCEEEEEEc
Confidence                       234666889999977666654

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=94.87  E-value=2.5  Score=37.05  Aligned_cols=116  Identities=14%  Similarity=0.097  Sum_probs=76.3

Q ss_pred             cCCeeeEEEeCCCCeEEEEeCCC-eEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceee
Q 019290           95 CGRPLGIKFNPVTCDLYIADAYF-GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMS  173 (343)
Q Consensus        95 ~~~p~gi~~~~~~~~l~v~~~~~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~  173 (343)
                      .+.++-+.|+| +|..+++...+ .|+.++..+. -+.+.... +. -..+.++...+ |++..++...           
T Consensus        47 ~geI~~~~F~P-~gs~~aSgG~Dr~I~LWnv~gd-ceN~~~lk-gH-sgAVM~l~~~~-d~s~i~S~gt-----------  110 (338)
T KOG0265|consen   47 KGEIYTIKFHP-DGSCFASGGSDRAIVLWNVYGD-CENFWVLK-GH-SGAVMELHGMR-DGSHILSCGT-----------  110 (338)
T ss_pred             cceEEEEEECC-CCCeEeecCCcceEEEEecccc-ccceeeec-cc-cceeEeeeecc-CCCEEEEecC-----------
Confidence            44567788999 88877764333 4777775422 22221111 11 13466777777 5887776654           


Q ss_pred             eeecCCCceEEEEeCCCCceE-EeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290          174 IATGDRSGRLLKYDPLKKNVT-VMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQG  232 (343)
Q Consensus       174 ~~~~~~~~~v~~~d~~~~~~~-~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~  232 (343)
                            ...|..||.++|+.. ....+....|.++....|-.|..+.+.++++..||...
T Consensus       111 ------Dk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~  164 (338)
T KOG0265|consen  111 ------DKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRK  164 (338)
T ss_pred             ------CceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecc
Confidence                  457999999888754 33344456777776667778889988999999999764

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=94.86  E-value=2.3  Score=36.70  Aligned_cols=156  Identities=12%  Similarity=0.067  Sum_probs=94.0

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      ..+++++.|.|+.|-++..+..+..|....+++..+..                 ++..-+.+.++++++ +|+++-..+
T Consensus        63 sVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~-----------------lEGHEnEVK~Vaws~-sG~~LATCS  124 (312)
T KOG0645|consen   63 SVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVAT-----------------LEGHENEVKCVAWSA-SGNYLATCS  124 (312)
T ss_pred             eeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEee-----------------eeccccceeEEEEcC-CCCEEEEee
Confidence            58899999999977788999999999888777776532                 223344678899998 555544322


Q ss_pred             -CCeEEEEeC-CCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCce
Q 019290          116 -YFGLMVVGP-NGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNV  193 (343)
Q Consensus       116 -~~gi~~~d~-~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~  193 (343)
                       ...++.+.. +.+++...+-. ++. ..-+..+...|. ..|.++-+..               ..-++|+.++ ....
T Consensus       125 RDKSVWiWe~deddEfec~aVL-~~H-tqDVK~V~WHPt-~dlL~S~SYD---------------nTIk~~~~~~-dddW  185 (312)
T KOG0645|consen  125 RDKSVWIWEIDEDDEFECIAVL-QEH-TQDVKHVIWHPT-EDLLFSCSYD---------------NTIKVYRDED-DDDW  185 (312)
T ss_pred             CCCeEEEEEecCCCcEEEEeee-ccc-cccccEEEEcCC-cceeEEeccC---------------CeEEEEeecC-CCCe
Confidence             344555443 33455544322 111 123556778884 6777765431               1345666554 3444


Q ss_pred             EE---eecCCCCcceeEEecCCCEEEEEEcCCCeEEEEE
Q 019290          194 TV---MYNGLSFPNGVALSNNNSFLLLAESATLKILRFW  229 (343)
Q Consensus       194 ~~---~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~  229 (343)
                      ..   +...-.+.-+++|++.|..|..+ +..+.+..|.
T Consensus       186 ~c~~tl~g~~~TVW~~~F~~~G~rl~s~-sdD~tv~Iw~  223 (312)
T KOG0645|consen  186 ECVQTLDGHENTVWSLAFDNIGSRLVSC-SDDGTVSIWR  223 (312)
T ss_pred             eEEEEecCccceEEEEEecCCCceEEEe-cCCcceEeee
Confidence            32   22222356788999988776544 3455555554

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=94.84  E-value=2.2  Score=38.88  Aligned_cols=102  Identities=16%  Similarity=0.034  Sum_probs=62.2

Q ss_pred             CceEEEEeCCCCceEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCC-----Cceee
Q 019290          180 SGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFP-----DNIKS  254 (343)
Q Consensus       180 ~~~v~~~d~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p-----~~i~~  254 (343)
                      ..+|-.||..+.....-.........+.++.++..+..+ +.++.+-++|+.+    .++......+++-     .-.++
T Consensus       321 DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLss-sRDdtl~viDlRt----~eI~~~~sA~g~k~asDwtrvvf  395 (459)
T KOG0288|consen  321 DKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSS-SRDDTLKVIDLRT----KEIRQTFSAEGFKCASDWTRVVF  395 (459)
T ss_pred             ccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeee-cCCCceeeeeccc----ccEEEEeeccccccccccceeEE
Confidence            345667775555544434444567778888888777665 5678888888766    3333333222221     22578


Q ss_pred             CCCCCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECCC-CCEEEEeeCC
Q 019290          255 DSKGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVN-GNVVDVLDGN  310 (343)
Q Consensus       255 d~~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~-g~~~~~~~~~  310 (343)
                      +|+|.+..+...                        .+.|+..+.. ||.......+
T Consensus       396 Spd~~YvaAGS~------------------------dgsv~iW~v~tgKlE~~l~~s  428 (459)
T KOG0288|consen  396 SPDGSYVAAGSA------------------------DGSVYIWSVFTGKLEKVLSLS  428 (459)
T ss_pred             CCCCceeeeccC------------------------CCcEEEEEccCceEEEEeccC
Confidence            898876666544                        4588888874 5655555543

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=94.64  E-value=1.3  Score=39.76  Aligned_cols=51  Identities=10%  Similarity=0.106  Sum_probs=36.9

Q ss_pred             CceEEEEeCCCCceEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEcc
Q 019290          180 SGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQ  231 (343)
Q Consensus       180 ~~~v~~~d~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~  231 (343)
                      ...|+.||...+....-..-...+|+|++.| +...+++...+..+|.||+.
T Consensus       209 DrsIvLyD~R~~~Pl~KVi~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR  259 (433)
T KOG0268|consen  209 DRSIVLYDLRQASPLKKVILTMRTNTICWNP-EAFNFVAANEDHNLYTYDMR  259 (433)
T ss_pred             CCceEEEecccCCccceeeeeccccceecCc-cccceeeccccccceehhhh
Confidence            4568889986555422112235689999999 66788888889999999864

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=94.57  E-value=1.3  Score=42.23  Aligned_cols=161  Identities=12%  Similarity=0.141  Sum_probs=84.8

Q ss_pred             CceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCC-eEEEEeC
Q 019290           37 PESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTC-DLYIADA  115 (343)
Q Consensus        37 p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~-~l~v~~~  115 (343)
                      ...+-+.+-..++.+++.+|.+-.||+.+.+..-......... +.. |      ......+..+.|.. +| ++-|++.
T Consensus       178 lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~-s~p-g------~~~~~svTal~F~d-~gL~~aVGts  248 (703)
T KOG2321|consen  178 LNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVN-SHP-G------GDAAPSVTALKFRD-DGLHVAVGTS  248 (703)
T ss_pred             ceeeeecCccceEEecccCceEEEecchhhhhheeeecccccC-CCc-c------ccccCcceEEEecC-CceeEEeecc
Confidence            4556666667767788899999999998754322111110000 000 0      01122366788886 44 5666643


Q ss_pred             CCeEEEEeCCCCeEEEcccccCCCCccCcceeEE---eCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCc
Q 019290          116 YFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDI---DPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKN  192 (343)
Q Consensus       116 ~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~---d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~  192 (343)
                      ...++.||+++.+.-.+..-....+   +..+..   |. ...++-.|..                   -+-.||+.+|+
T Consensus       249 ~G~v~iyDLRa~~pl~~kdh~~e~p---i~~l~~~~~~~-q~~v~S~Dk~-------------------~~kiWd~~~Gk  305 (703)
T KOG2321|consen  249 TGSVLIYDLRASKPLLVKDHGYELP---IKKLDWQDTDQ-QNKVVSMDKR-------------------ILKIWDECTGK  305 (703)
T ss_pred             CCcEEEEEcccCCceeecccCCccc---eeeecccccCC-CceEEecchH-------------------HhhhcccccCC
Confidence            3349999998765432221111111   222222   22 1233332221                   13335777776


Q ss_pred             eEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEc
Q 019290          193 VTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWL  230 (343)
Q Consensus       193 ~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~  230 (343)
                      .-.........|.+|+-++++.++.+ ..+..+..|-+
T Consensus       306 ~~asiEpt~~lND~C~~p~sGm~f~A-ne~~~m~~yyi  342 (703)
T KOG2321|consen  306 PMASIEPTSDLNDFCFVPGSGMFFTA-NESSKMHTYYI  342 (703)
T ss_pred             ceeeccccCCcCceeeecCCceEEEe-cCCCcceeEEc
Confidence            55444455668999999887644444 44555655554

>COG3211 PhoX Predicted phosphatase [General function prediction only]

Probab=94.53  E-value=0.68  Score=44.13  Aligned_cols=124  Identities=18%  Similarity=0.322  Sum_probs=72.1

Q ss_pred             CCCCCceEEEcCC-CCeeEEEecC----------------CEEEEEEcCCC-------CeEEeeecCCCccccccCCCCC
Q 019290           33 GVVGPESLAFDCN-GEGPYVGVSD----------------GRILKWKAANS-------GWTEFATTAPHRAREICDGSTN   88 (343)
Q Consensus        33 ~~~~p~~l~~d~~-g~~l~~~~~~----------------g~i~~~d~~~~-------~~~~~~~~~~~~~~~~~~~~~~   88 (343)
                      .+..||.|++.+. |+++++.+++                |+|++|-+.+.       .|..|.....-..  .-.+...
T Consensus       415 ~mdRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~--~~~~~~~  492 (616)
T COG3211         415 PMDRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSV--LEGGASA  492 (616)
T ss_pred             cccCccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCccc--ccccccc
Confidence            3457999999997 5544444443                46999977665       5666654432110  0000000


Q ss_pred             cccCCCcCCeeeEEEeCCCCeEEEEeCC---------CeEEEE---eCCCCeEEEcccccCCCCccCcceeEEeCCCCeE
Q 019290           89 TTLEPLCGRPLGIKFNPVTCDLYIADAY---------FGLMVV---GPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIV  156 (343)
Q Consensus        89 ~~~~~~~~~p~gi~~~~~~~~l~v~~~~---------~gi~~~---d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l  156 (343)
                      .....-++.|.+|++++ .|+|||++.+         .|+..+   ++++++++++.....+   .-+.+.++.|+...+
T Consensus       493 ~~~~~~f~~PDnl~fD~-~GrLWi~TDg~~s~~~~~~~G~~~m~~~~p~~g~~~rf~t~P~g---~E~tG~~FspD~~Tl  568 (616)
T COG3211         493 NINANWFNSPDNLAFDP-WGRLWIQTDGSGSTLRNRFRGVTQMLTPDPKTGTIKRFLTGPIG---CEFTGPCFSPDGKTL  568 (616)
T ss_pred             CcccccccCCCceEECC-CCCEEEEecCCCCccCcccccccccccCCCccceeeeeccCCCc---ceeecceeCCCCceE
Confidence            00112355689999999 9999998532         133333   4455666665433322   336788899843468


Q ss_pred             EEEeCC
Q 019290          157 YFTDSS  162 (343)
Q Consensus       157 ~v~~~~  162 (343)
                      |++-++
T Consensus       569 FV~vQH  574 (616)
T COG3211         569 FVNVQH  574 (616)
T ss_pred             EEEecC
Confidence            887665

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=94.48  E-value=4  Score=37.75  Aligned_cols=39  Identities=21%  Similarity=0.159  Sum_probs=21.8

Q ss_pred             ceEEEEeCCCCceEEeecCCC-CcceeEEecCCCEEEEEE
Q 019290          181 GRLLKYDPLKKNVTVMYNGLS-FPNGVALSNNNSFLLLAE  219 (343)
Q Consensus       181 ~~v~~~d~~~~~~~~~~~~~~-~~~~i~~~~d~~~lyv~~  219 (343)
                      ..+++||+.+.+++.+..... ...+.++...+..||+..
T Consensus       189 ~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~G  228 (376)
T PRK14131        189 KEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLIN  228 (376)
T ss_pred             ceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEe
Confidence            469999999888876432211 222323222244678764

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=94.48  E-value=1  Score=41.31  Aligned_cols=162  Identities=14%  Similarity=0.106  Sum_probs=93.1

Q ss_pred             CceEEEcCC--CCeeEEEecCCEEEEEEcCCCCeE--EeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEE
Q 019290           37 PESLAFDCN--GEGPYVGVSDGRILKWKAANSGWT--EFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYI  112 (343)
Q Consensus        37 p~~l~~d~~--g~~l~~~~~~g~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v  112 (343)
                      -.+|++.+.  |. +..+..++.|..+|.+.....  .+...              .........+..+++++-...||.
T Consensus       180 g~glsWn~~~~g~-Lls~~~d~~i~lwdi~~~~~~~~~~~p~--------------~~~~~h~~~VeDV~~h~~h~~lF~  244 (422)
T KOG0264|consen  180 GYGLSWNRQQEGT-LLSGSDDHTICLWDINAESKEDKVVDPK--------------TIFSGHEDVVEDVAWHPLHEDLFG  244 (422)
T ss_pred             cccccccccccee-EeeccCCCcEEEEeccccccCCccccce--------------EEeecCCcceehhhccccchhhhe
Confidence            345666653  33 566778888888887543210  00000              000011223456667764556776


Q ss_pred             EeCCCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCC
Q 019290          113 ADAYFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKK  191 (343)
Q Consensus       113 ~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~  191 (343)
                      +...++ +..+|.++++ ... .........-++.+++.|. +...+++.+                ..+.|..+|+..-
T Consensus       245 sv~dd~~L~iwD~R~~~-~~~-~~~~~ah~~~vn~~~fnp~-~~~ilAT~S----------------~D~tV~LwDlRnL  305 (422)
T KOG0264|consen  245 SVGDDGKLMIWDTRSNT-SKP-SHSVKAHSAEVNCVAFNPF-NEFILATGS----------------ADKTVALWDLRNL  305 (422)
T ss_pred             eecCCCeEEEEEcCCCC-CCC-cccccccCCceeEEEeCCC-CCceEEecc----------------CCCcEEEeechhc
Confidence            654455 8889988531 111 1111122245789999996 554444433                2567888887522


Q ss_pred             --ceEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290          192 --NVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQG  232 (343)
Q Consensus       192 --~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~  232 (343)
                        .+..+...-.....+.++|..+.+..+...++++.+||+..
T Consensus       306 ~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~  348 (422)
T KOG0264|consen  306 NKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSR  348 (422)
T ss_pred             ccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccc
Confidence              22233333344567888999888888888899999999864

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.33  E-value=3.3  Score=36.20  Aligned_cols=111  Identities=26%  Similarity=0.308  Sum_probs=58.8

Q ss_pred             CeeeEEEeCCC-CeEEEEeCCCe--EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCe-EEEEeCCccccccccee
Q 019290           97 RPLGIKFNPVT-CDLYIADAYFG--LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGI-VYFTDSSIYFQRRQYFM  172 (343)
Q Consensus        97 ~p~gi~~~~~~-~~l~v~~~~~g--i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~-l~v~~~~~~~~~~~~~~  172 (343)
                      +-++|++++.- ..+.|+- .-|  .+.+|+.+++.-.......+.  .+.-.-++.+ ||+ ||.++..-         
T Consensus        69 R~Hgi~~~p~~~ravafAR-rPGtf~~vfD~~~~~~pv~~~s~~~R--HfyGHGvfs~-dG~~LYATEndf---------  135 (366)
T COG3490          69 RGHGIAFHPALPRAVAFAR-RPGTFAMVFDPNGAQEPVTLVSQEGR--HFYGHGVFSP-DGRLLYATENDF---------  135 (366)
T ss_pred             ccCCeecCCCCcceEEEEe-cCCceEEEECCCCCcCcEEEecccCc--eeecccccCC-CCcEEEeecCCC---------
Confidence            45778887633 3466663 333  677888776533222222222  1222345667 576 55555431         


Q ss_pred             eeeecCCCceEEEEeCCCCceE---EeecCCCCcceeEEecCCCEEEEEEcCCCeEEEE
Q 019290          173 SIATGDRSGRLLKYDPLKKNVT---VMYNGLSFPNGVALSNNNSFLLLAESATLKILRF  228 (343)
Q Consensus       173 ~~~~~~~~~~v~~~d~~~~~~~---~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~  228 (343)
                          ....|.|=.||... .+.   .+......|-.+.+.+||+++.+++   ++|...
T Consensus       136 ----d~~rGViGvYd~r~-~fqrvgE~~t~GiGpHev~lm~DGrtlvvan---GGIeth  186 (366)
T COG3490         136 ----DPNRGVIGVYDARE-GFQRVGEFSTHGIGPHEVTLMADGRTLVVAN---GGIETH  186 (366)
T ss_pred             ----CCCCceEEEEeccc-ccceecccccCCcCcceeEEecCCcEEEEeC---Cceecc
Confidence                12234455555432 222   2233445677888889999887763   555543

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=94.21  E-value=4.1  Score=41.51  Aligned_cols=105  Identities=11%  Similarity=0.074  Sum_probs=63.8

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      ...+++++|++.++.....++.|..|+..+-+....                   +....+.+.|+.+|| -|..+.+..
T Consensus       131 DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~v-------------------l~~H~s~VKGvs~DP-~Gky~ASqs  190 (942)
T KOG0973|consen  131 DVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKV-------------------LRGHQSLVKGVSWDP-IGKYFASQS  190 (942)
T ss_pred             ccceeccCCCccEEEEecccceEEEEccccceeeee-------------------eecccccccceEECC-ccCeeeeec
Confidence            366889999999777778899999999877533222                   224445678999999 666555544


Q ss_pred             CCe-EEEEeCCCCeEEEcccccC--CCCccCcceeEEeCCCCeEEEEeC
Q 019290          116 YFG-LMVVGPNGGQAQQLASSAG--GIPFRFTNDLDIDPNTGIVYFTDS  161 (343)
Q Consensus       116 ~~g-i~~~d~~~~~~~~~~~~~~--~~~~~~~~~i~~d~~dg~l~v~~~  161 (343)
                      .++ |..+...+-.+......+.  .....+...+...| ||...++..
T Consensus       191 dDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSP-DG~~las~n  238 (942)
T KOG0973|consen  191 DDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSP-DGHHLASPN  238 (942)
T ss_pred             CCceEEEEEcccceeeEeeccchhhCCCcceeeecccCC-CcCeecchh
Confidence            455 5555433222222222211  12234556677788 587766543

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=94.21  E-value=2.9  Score=35.07  Aligned_cols=74  Identities=20%  Similarity=0.167  Sum_probs=47.0

Q ss_pred             cCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceE-EeecCCCCcceeEEecCCCEEEEEEc
Q 019290          142 RFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVT-VMYNGLSFPNGVALSNNNSFLLLAES  220 (343)
Q Consensus       142 ~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~~~~~~i~~~~d~~~lyv~~~  220 (343)
                      ..+..+++||. |++.++...                 ...-..||..++.+. ++.........+.|+|... ...+.+
T Consensus       232 savaav~vdps-grll~sg~~-----------------dssc~lydirg~r~iq~f~phsadir~vrfsp~a~-yllt~s  292 (350)
T KOG0641|consen  232 SAVAAVAVDPS-GRLLASGHA-----------------DSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAH-YLLTCS  292 (350)
T ss_pred             ceeEEEEECCC-cceeeeccC-----------------CCceEEEEeeCCceeeeeCCCccceeEEEeCCCce-EEEEec
Confidence            45677889994 998886432                 223444566555543 3444445567778887544 444666


Q ss_pred             CCCeEEEEEccCcc
Q 019290          221 ATLKILRFWLQGER  234 (343)
Q Consensus       221 ~~~~i~~~~~~~~~  234 (343)
                      .+..|..-|+.|+.
T Consensus       293 yd~~ikltdlqgdl  306 (350)
T KOG0641|consen  293 YDMKIKLTDLQGDL  306 (350)
T ss_pred             ccceEEEeecccch
Confidence            78889888888753

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=94.13  E-value=0.76  Score=40.93  Aligned_cols=187  Identities=14%  Similarity=0.118  Sum_probs=96.3

Q ss_pred             ccccccCC--CCCCCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEE
Q 019290           25 SYQQLQLP--GVVGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIK  102 (343)
Q Consensus        25 ~~~~~~~~--~~~~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~  102 (343)
                      .++++..+  ...+..++.+| |+. ++.+..+..|-.||.++.....+.                   ....+.+..+.
T Consensus       186 ~~~rinc~Se~skgVYClQYD-D~k-iVSGlrDnTikiWD~n~~~c~~~L-------------------~GHtGSVLCLq  244 (499)
T KOG0281|consen  186 LLQRINCRSENSKGVYCLQYD-DEK-IVSGLRDNTIKIWDKNSLECLKIL-------------------TGHTGSVLCLQ  244 (499)
T ss_pred             eeeeecCCcccCCceEEEEec-chh-hhcccccCceEEeccccHHHHHhh-------------------hcCCCcEEeee
Confidence            44556655  22245566665 334 678888888999988764433221                   12222333444


Q ss_pred             EeCCCCeEEEEeCC-CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCc
Q 019290          103 FNPVTCDLYIADAY-FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSG  181 (343)
Q Consensus       103 ~~~~~~~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~  181 (343)
                      ++   +++.|+... ..+..+|.++|+.-....-..    ..+-++.+..  |. .++-+..               .+.
T Consensus       245 yd---~rviisGSSDsTvrvWDv~tge~l~tlihHc----eaVLhlrf~n--g~-mvtcSkD---------------rsi  299 (499)
T KOG0281|consen  245 YD---ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHC----EAVLHLRFSN--GY-MVTCSKD---------------RSI  299 (499)
T ss_pred             cc---ceEEEecCCCceEEEEeccCCchhhHHhhhc----ceeEEEEEeC--CE-EEEecCC---------------cee
Confidence            44   456665443 348899999886432211111    1233334332  33 3332220               123


Q ss_pred             eEEEEeCCCCc--eEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCC-CC
Q 019290          182 RLLKYDPLKKN--VTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDS-KG  258 (343)
Q Consensus       182 ~v~~~d~~~~~--~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~-~G  258 (343)
                      .||..+..+..  .+.+.......|.+.++  .+ ++|+.+.+.+|.+|+..+    .++  +-.+.++-.|++.-. .|
T Consensus       300 aVWdm~sps~it~rrVLvGHrAaVNvVdfd--~k-yIVsASgDRTikvW~~st----~ef--vRtl~gHkRGIAClQYr~  370 (499)
T KOG0281|consen  300 AVWDMASPTDITLRRVLVGHRAAVNVVDFD--DK-YIVSASGDRTIKVWSTST----CEF--VRTLNGHKRGIACLQYRD  370 (499)
T ss_pred             EEEeccCchHHHHHHHHhhhhhheeeeccc--cc-eEEEecCCceEEEEeccc----eee--ehhhhcccccceehhccC
Confidence            35554432211  11233344456666665  33 677778889999999765    221  112556677877644 45


Q ss_pred             CEEEEecc
Q 019290          259 EFWIAMNS  266 (343)
Q Consensus       259 ~lwi~~~~  266 (343)
                      ++.++...
T Consensus       371 rlvVSGSS  378 (499)
T KOG0281|consen  371 RLVVSGSS  378 (499)
T ss_pred             eEEEecCC
Confidence            66665443

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=94.09  E-value=0.24  Score=29.40  Aligned_cols=42  Identities=7%  Similarity=0.071  Sum_probs=27.8

Q ss_pred             cCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeC
Q 019290          210 NNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSD  255 (343)
Q Consensus       210 ~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d  255 (343)
                      ++++.||+++...+.|..+|......   ... ......|.+++++
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~---~~~-i~vg~~P~~i~~~   42 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKV---IAT-IPVGGYPFGVAVS   42 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeE---EEE-EECCCCCceEEeC
Confidence            47888999999999999999754211   111 1233457777754

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats

Probab=94.08  E-value=0.056  Score=28.19  Aligned_cols=17  Identities=35%  Similarity=0.612  Sum_probs=13.1

Q ss_pred             CCceeeCCCCCEEEEec
Q 019290          249 PDNIKSDSKGEFWIAMN  265 (343)
Q Consensus       249 p~~i~~d~~G~lwi~~~  265 (343)
                      ...++.|++|+||+++.
T Consensus         7 I~~i~~D~~G~lWigT~   23 (24)
T PF07494_consen    7 IYSIYEDSDGNLWIGTY   23 (24)
T ss_dssp             EEEEEE-TTSCEEEEET
T ss_pred             EEEEEEcCCcCEEEEeC
Confidence            34578899999999985

These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=94.08  E-value=2.8  Score=37.87  Aligned_cols=102  Identities=15%  Similarity=0.195  Sum_probs=62.8

Q ss_pred             CceEEEcCCCCeeEEEecCCEEEEEEcCCCCeE-EeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           37 PESLAFDCNGEGPYVGVSDGRILKWKAANSGWT-EFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        37 p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      ...+.+++.+. +|....++.|..||..++... .+.                     ....-+.+.+.+ ...|.++..
T Consensus       263 Vs~V~w~d~~v-~yS~SwDHTIk~WDletg~~~~~~~---------------------~~ksl~~i~~~~-~~~Ll~~gs  319 (423)
T KOG0313|consen  263 VSSVVWSDATV-IYSVSWDHTIKVWDLETGGLKSTLT---------------------TNKSLNCISYSP-LSKLLASGS  319 (423)
T ss_pred             eeeEEEcCCCc-eEeecccceEEEEEeecccceeeee---------------------cCcceeEeeccc-ccceeeecC
Confidence            55677777555 899999999999999875422 111                     111124667777 555555533


Q ss_pred             -CCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCC
Q 019290          116 -YFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSS  162 (343)
Q Consensus       116 -~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~  162 (343)
                       ...+..+||+++.-....+...+.. +++..+...|.+-.++++.+.
T Consensus       320 sdr~irl~DPR~~~gs~v~~s~~gH~-nwVssvkwsp~~~~~~~S~S~  366 (423)
T KOG0313|consen  320 SDRHIRLWDPRTGDGSVVSQSLIGHK-NWVSSVKWSPTNEFQLVSGSY  366 (423)
T ss_pred             CCCceeecCCCCCCCceeEEeeecch-hhhhheecCCCCceEEEEEec
Confidence             3458999998765333322222322 578888888864456665544

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.03  E-value=7.7  Score=39.26  Aligned_cols=202  Identities=10%  Similarity=0.013  Sum_probs=100.6

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      ..+++++-+++-+++++..+-.|-.|+..+.+.. |                  +.......+..+.|+.+--.+.-+..
T Consensus        53 pVRgv~FH~~qplFVSGGDDykIkVWnYk~rrcl-f------------------tL~GHlDYVRt~~FHheyPWIlSASD  113 (1202)
T KOG0292|consen   53 PVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCL-F------------------TLLGHLDYVRTVFFHHEYPWILSASD  113 (1202)
T ss_pred             ccceeeecCCCCeEEecCCccEEEEEecccceeh-h------------------hhccccceeEEeeccCCCceEEEccC
Confidence            5789999999996667777778888887664322 1                  11123345667778875555555543


Q ss_pred             CCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCc----ccccccc-eeeeeec----CCCceE---
Q 019290          116 YFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSI----YFQRRQY-FMSIATG----DRSGRL---  183 (343)
Q Consensus       116 ~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~----~~~~~~~-~~~~~~~----~~~~~v---  183 (343)
                      ..-|+.+|.++++-.......    ...+....+.|. ..+.++.+-.    .|.+..- .+....+    ...+.-   
T Consensus       114 DQTIrIWNwqsr~~iavltGH----nHYVMcAqFhpt-EDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~  188 (1202)
T KOG0292|consen  114 DQTIRIWNWQSRKCIAVLTGH----NHYVMCAQFHPT-EDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNS  188 (1202)
T ss_pred             CCeEEEEeccCCceEEEEecC----ceEEEeeccCCc-cceEEEecccceEEEEeecchhccCCCCCCchhhhhccccch
Confidence            455888888876643332221    133445556663 5555554321    1111000 0000000    000000   


Q ss_pred             EEEeCCCCceE-EeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeee--c-CCCCCCceeeCCCCC
Q 019290          184 LKYDPLKKNVT-VMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFA--E-MPRFPDNIKSDSKGE  259 (343)
Q Consensus       184 ~~~d~~~~~~~-~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~--~-~~~~p~~i~~d~~G~  259 (343)
                      -.+....-.++ .+...-++.|-.+|+|.-. |+++...+..|-.|.....   ...++-.  . .++ .+++.+++.-+
T Consensus       189 dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp-liVSG~DDRqVKlWrmnet---KaWEvDtcrgH~nn-Vssvlfhp~q~  263 (1202)
T KOG0292|consen  189 DLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNET---KAWEVDTCRGHYNN-VSSVLFHPHQD  263 (1202)
T ss_pred             hhcCCcCeeeeeeecccccccceEEecCCcc-eEEecCCcceeeEEEeccc---cceeehhhhcccCC-cceEEecCccc
Confidence            00000001111 1223345678889987654 7888776666655555321   1111110  0 111 34566777777


Q ss_pred             EEEEecc
Q 019290          260 FWIAMNS  266 (343)
Q Consensus       260 lwi~~~~  266 (343)
                      +.++...
T Consensus       264 lIlSnsE  270 (1202)
T KOG0292|consen  264 LILSNSE  270 (1202)
T ss_pred             eeEecCC
Confidence            7777655

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.96  E-value=1.4  Score=39.76  Aligned_cols=101  Identities=9%  Similarity=-0.045  Sum_probs=63.5

Q ss_pred             CceEEEcCC--CCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEe
Q 019290           37 PESLAFDCN--GEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIAD  114 (343)
Q Consensus        37 p~~l~~d~~--g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~  114 (343)
                      +.++.|-+.  ...+.+.+..+.+..||+..+....... .                 -.-.....+.+.+..+.||+++
T Consensus       205 ~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~f-d-----------------~~E~~is~~~l~p~gn~Iy~gn  266 (412)
T KOG3881|consen  205 ITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQF-D-----------------FLENPISSTGLTPSGNFIYTGN  266 (412)
T ss_pred             eccceecCCCCCceEEEEecceeEEEecCcccCcceeEe-c-----------------cccCcceeeeecCCCcEEEEec
Confidence            445556554  5656677888999999998654322110 0                 0111234677788677899997


Q ss_pred             CCCeEEEEeCCCCeEEEc-ccccCCCCccCcceeEEeCCCCeEEEEe
Q 019290          115 AYFGLMVVGPNGGQAQQL-ASSAGGIPFRFTNDLDIDPNTGIVYFTD  160 (343)
Q Consensus       115 ~~~gi~~~d~~~~~~~~~-~~~~~~~~~~~~~~i~~d~~dg~l~v~~  160 (343)
                      +...+..+|.++++.... .....    ..+.+|..++. +.+..+.
T Consensus       267 ~~g~l~~FD~r~~kl~g~~~kg~t----Gsirsih~hp~-~~~las~  308 (412)
T KOG3881|consen  267 TKGQLAKFDLRGGKLLGCGLKGIT----GSIRSIHCHPT-HPVLASC  308 (412)
T ss_pred             ccchhheecccCceeeccccCCcc----CCcceEEEcCC-CceEEee
Confidence            655699999998775433 11111    35789999994 6666633

>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=93.85  E-value=0.17  Score=30.42  Aligned_cols=39  Identities=18%  Similarity=0.136  Sum_probs=29.3

Q ss_pred             EEEEEEcCCC-eEEEEEccCccccccceeeec-CCCCCCceeeCC
Q 019290          214 FLLLAESATL-KILRFWLQGERTTYTPQLFAE-MPRFPDNIKSDS  256 (343)
Q Consensus       214 ~lyv~~~~~~-~i~~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~  256 (343)
                      .+||++...+ .|.+.+++|    ...+++.. .-..|.++++|.
T Consensus         2 ~iYWtD~~~~~~I~~a~~dG----s~~~~vi~~~l~~P~giaVD~   42 (42)
T PF00058_consen    2 KIYWTDWSQDPSIERANLDG----SNRRTVISDDLQHPEGIAVDW   42 (42)
T ss_dssp             EEEEEETTTTEEEEEEETTS----TSEEEEEESSTSSEEEEEEET
T ss_pred             EEEEEECCCCcEEEEEECCC----CCeEEEEECCCCCcCEEEECC
Confidence            6899999999 999999988    34344443 334699999874

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.79  E-value=1.1  Score=45.84  Aligned_cols=157  Identities=22%  Similarity=0.243  Sum_probs=81.4

Q ss_pred             ceEEEcCCCCe----eEEEecCCEEEEEEcCCC----CeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCe
Q 019290           38 ESLAFDCNGEG----PYVGVSDGRILKWKAANS----GWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCD  109 (343)
Q Consensus        38 ~~l~~d~~g~~----l~~~~~~g~i~~~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~  109 (343)
                      ..|++.+.|..    +-.+..+|.|..||+..-    +...+                 .......+.+.|+.|.+.+++
T Consensus        68 ~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~l-----------------a~~~~h~G~V~gLDfN~~q~n  130 (1049)
T KOG0307|consen   68 NKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVL-----------------ATKSKHTGPVLGLDFNPFQGN  130 (1049)
T ss_pred             eeeeecccCCCccceeeccccCCceEEecchhhccCcchHHH-----------------hhhcccCCceeeeeccccCCc
Confidence            35666655554    445678899999998641    11011                 111122345678999985555


Q ss_pred             EEEEeCCCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeC
Q 019290          110 LYIADAYFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDP  188 (343)
Q Consensus       110 l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~  188 (343)
                      +.-+...+| |+.+|...- -+++... ...+...+..++.......++.+...                 .++...+|.
T Consensus       131 lLASGa~~geI~iWDlnn~-~tP~~~~-~~~~~~eI~~lsWNrkvqhILAS~s~-----------------sg~~~iWDl  191 (1049)
T KOG0307|consen  131 LLASGADDGEILIWDLNKP-ETPFTPG-SQAPPSEIKCLSWNRKVSHILASGSP-----------------SGRAVIWDL  191 (1049)
T ss_pred             eeeccCCCCcEEEeccCCc-CCCCCCC-CCCCcccceEeccchhhhHHhhccCC-----------------CCCceeccc
Confidence            665544455 999998741 1222111 11111234444444322334443332                 567888887


Q ss_pred             CCCceEEeecCC---CCcceeEEecCCCEEEEEEcCC---CeEEEEEc
Q 019290          189 LKKNVTVMYNGL---SFPNGVALSNNNSFLLLAESAT---LKILRFWL  230 (343)
Q Consensus       189 ~~~~~~~~~~~~---~~~~~i~~~~d~~~lyv~~~~~---~~i~~~~~  230 (343)
                      ..++...-....   ..-.+++++|+..+-.++.+.+   -.|-.||+
T Consensus       192 r~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDl  239 (1049)
T KOG0307|consen  192 RKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDL  239 (1049)
T ss_pred             cCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecc
Confidence            644322212222   2256899999876644443333   34445554

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=93.75  E-value=7.2  Score=39.57  Aligned_cols=143  Identities=13%  Similarity=0.084  Sum_probs=75.5

Q ss_pred             CeeeEEEeCCCCeEEEEeC--CCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCC-----CCeEEEEeCCccccccc
Q 019290           97 RPLGIKFNPVTCDLYIADA--YFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPN-----TGIVYFTDSSIYFQRRQ  169 (343)
Q Consensus        97 ~p~gi~~~~~~~~l~v~~~--~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~-----dg~l~v~~~~~~~~~~~  169 (343)
                      .|.-+.++.++..+.+-+.  .+.|+++|++.|++..-.......   .+.+++.+.+     ....+++-+        
T Consensus       482 ~P~k~mL~~~d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~---~v~~~~p~~K~aqlt~e~tflGls--------  550 (794)
T PF08553_consen  482 TPKKAMLHDQDRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDI---PVVDIAPDSKFAQLTNEQTFLGLS--------  550 (794)
T ss_pred             CcchhhhhccccceEeecCCCCCceEEEecCCCcEEEEeecCCCc---ceeEecccccccccCCCceEEEEC--------
Confidence            3555555655666666543  356999999999876543332221   1444444321     123444333        


Q ss_pred             ceeeeeecCCCceEEEEeCCCCceEEee----cCCCC--cceeEEecCCCEEEEEEcCCCeEEEEEccCcccccccee-e
Q 019290          170 YFMSIATGDRSGRLLKYDPLKKNVTVMY----NGLSF--PNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQL-F  242 (343)
Q Consensus       170 ~~~~~~~~~~~~~v~~~d~~~~~~~~~~----~~~~~--~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~-~  242 (343)
                                ..+|+++||.-..-..+.    +....  ...++-+.+|.  ++..+..|.|..|+-.+    .+.+. +
T Consensus       551 ----------~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G~--iavgs~~G~IRLyd~~g----~~AKT~l  614 (794)
T PF08553_consen  551 ----------DNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDGY--IAVGSNKGDIRLYDRLG----KRAKTAL  614 (794)
T ss_pred             ----------CCceEEeccCCCCCceeeccccccccCCCceEEEecCCce--EEEEeCCCcEEeecccc----hhhhhcC
Confidence                      457999998632211111    11122  23444444543  34455688999998544    12222 2


Q ss_pred             ecCCCCCCceeeCCCCCEEEEecc
Q 019290          243 AEMPRFPDNIKSDSKGEFWIAMNS  266 (343)
Q Consensus       243 ~~~~~~p~~i~~d~~G~lwi~~~~  266 (343)
                      ..+..-.-++.+..||+..+|+-.
T Consensus       615 p~lG~pI~~iDvt~DGkwilaTc~  638 (794)
T PF08553_consen  615 PGLGDPIIGIDVTADGKWILATCK  638 (794)
T ss_pred             CCCCCCeeEEEecCCCcEEEEeec
Confidence            112222345778889987777654

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=93.75  E-value=1.1  Score=41.55  Aligned_cols=187  Identities=16%  Similarity=0.175  Sum_probs=106.2

Q ss_pred             cccCCCCCCCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeE-EeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCC
Q 019290           28 QLQLPGVVGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWT-EFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPV  106 (343)
Q Consensus        28 ~~~~~~~~~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~  106 (343)
                      .+.+|. .+|..+-+..+|+++.++...|-|-.+|-.++.+. ++..                     .-...++.+-- 
T Consensus       124 ~L~l~e-FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v---------------------~Etv~Dv~~LH-  180 (545)
T KOG1272|consen  124 DLSLPE-FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV---------------------METVRDVTFLH-  180 (545)
T ss_pred             cccccc-cCCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh---------------------hhhhhhhhhhc-
Confidence            345554 37999999999999999888888888887775432 2210                     00123333332 


Q ss_pred             CCeEEEEeCCC-eEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEE
Q 019290          107 TCDLYIADAYF-GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLK  185 (343)
Q Consensus       107 ~~~l~v~~~~~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~  185 (343)
                      ... |+|..+. =+|.||-.+.+.+.+-..      ..++.+-+-|. -.|.++.+.                 .|-+-.
T Consensus       181 neq-~~AVAQK~y~yvYD~~GtElHClk~~------~~v~rLeFLPy-HfLL~~~~~-----------------~G~L~Y  235 (545)
T KOG1272|consen  181 NEQ-FFAVAQKKYVYVYDNNGTELHCLKRH------IRVARLEFLPY-HFLLVAASE-----------------AGFLKY  235 (545)
T ss_pred             chH-HHHhhhhceEEEecCCCcEEeehhhc------Cchhhhcccch-hheeeeccc-----------------CCceEE
Confidence            122 3332333 388888876666665322      22444555563 445554332                 455666


Q ss_pred             EeCCCCceE-EeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEe
Q 019290          186 YDPLKKNVT-VMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAM  264 (343)
Q Consensus       186 ~d~~~~~~~-~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~  264 (343)
                      .|..+|++. .+..+......++..|-...+ ...-.+|.|..|.+.....  -.++++. .+-..++++|++|++.+++
T Consensus       236 ~DVS~GklVa~~~t~~G~~~vm~qNP~NaVi-h~GhsnGtVSlWSP~skeP--LvKiLcH-~g~V~siAv~~~G~YMaTt  311 (545)
T KOG1272|consen  236 QDVSTGKLVASIRTGAGRTDVMKQNPYNAVI-HLGHSNGTVSLWSPNSKEP--LVKILCH-RGPVSSIAVDRGGRYMATT  311 (545)
T ss_pred             EeechhhhhHHHHccCCccchhhcCCccceE-EEcCCCceEEecCCCCcch--HHHHHhc-CCCcceEEECCCCcEEeec
Confidence            677777643 222333344455555554433 3444578888888654221  1122222 2336789999999888887


Q ss_pred             cc
Q 019290          265 NS  266 (343)
Q Consensus       265 ~~  266 (343)
                      .-
T Consensus       312 G~  313 (545)
T KOG1272|consen  312 GL  313 (545)
T ss_pred             cc
Confidence            65

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=93.74  E-value=5.4  Score=36.52  Aligned_cols=93  Identities=16%  Similarity=0.141  Sum_probs=58.1

Q ss_pred             CeEEEEeCCC---eEEEEeCCCCeEEEcccccCCCCccCcc-eeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceE
Q 019290          108 CDLYIADAYF---GLMVVGPNGGQAQQLASSAGGIPFRFTN-DLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRL  183 (343)
Q Consensus       108 ~~l~v~~~~~---gi~~~d~~~~~~~~~~~~~~~~~~~~~~-~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v  183 (343)
                      .-||+.. .+   .|+.++.+++..+.+....     -.+. -+.+|...+.+|++....             ....-.|
T Consensus       249 ~~l~~s~-~~G~~hly~~~~~~~~~~~lT~G~-----~~V~~i~~~d~~~~~iyf~a~~~-------------~p~~r~l  309 (353)
T PF00930_consen  249 EFLWISE-RDGYRHLYLYDLDGGKPRQLTSGD-----WEVTSILGWDEDNNRIYFTANGD-------------NPGERHL  309 (353)
T ss_dssp             EEEEEEE-TTSSEEEEEEETTSSEEEESS-SS-----S-EEEEEEEECTSSEEEEEESSG-------------GTTSBEE
T ss_pred             EEEEEEE-cCCCcEEEEEcccccceeccccCc-----eeecccceEcCCCCEEEEEecCC-------------CCCceEE
Confidence            3466664 43   4999999988876553221     1233 356777557888866541             1113469


Q ss_pred             EEEeCC-CCceEEeecCCCCcceeEEecCCCEEEEEE
Q 019290          184 LKYDPL-KKNVTVMYNGLSFPNGVALSNNNSFLLLAE  219 (343)
Q Consensus       184 ~~~d~~-~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~  219 (343)
                      |+++.+ ++..+++.........+.++++++.+..+-
T Consensus       310 Y~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~  346 (353)
T PF00930_consen  310 YRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTY  346 (353)
T ss_dssp             EEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred             EEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEEE
Confidence            999998 888887765443334888999998655443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=93.72  E-value=4.9  Score=35.93  Aligned_cols=181  Identities=16%  Similarity=0.163  Sum_probs=83.4

Q ss_pred             eEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCCCe
Q 019290           39 SLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFG  118 (343)
Q Consensus        39 ~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~~g  118 (343)
                      +|.++.  ...|+.-..+.|++-...+..|..+..+.                 ...+.+.++.... ++.++++.....
T Consensus        66 ~I~f~~--~~g~ivG~~g~ll~T~DgG~tW~~v~l~~-----------------~lpgs~~~i~~l~-~~~~~l~~~~G~  125 (302)
T PF14870_consen   66 SISFDG--NEGWIVGEPGLLLHTTDGGKTWERVPLSS-----------------KLPGSPFGITALG-DGSAELAGDRGA  125 (302)
T ss_dssp             EEEEET--TEEEEEEETTEEEEESSTTSS-EE----T-----------------T-SS-EEEEEEEE-TTEEEEEETT--
T ss_pred             EEEecC--CceEEEcCCceEEEecCCCCCcEEeecCC-----------------CCCCCeeEEEEcC-CCcEEEEcCCCc
Confidence            454443  33565556777787776777888774321                 1223456666554 567776644444


Q ss_pred             EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEE-EeCCCCceEEee
Q 019290          119 LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLK-YDPLKKNVTVMY  197 (343)
Q Consensus       119 i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~-~d~~~~~~~~~~  197 (343)
                      |++-.-.+..++.+.....    ..++++...+ ||++.+...                  .|.++. .|+.....+...
T Consensus       126 iy~T~DgG~tW~~~~~~~~----gs~~~~~r~~-dG~~vavs~------------------~G~~~~s~~~G~~~w~~~~  182 (302)
T PF14870_consen  126 IYRTTDGGKTWQAVVSETS----GSINDITRSS-DGRYVAVSS------------------RGNFYSSWDPGQTTWQPHN  182 (302)
T ss_dssp             EEEESSTTSSEEEEE-S--------EEEEEE-T-TS-EEEEET------------------TSSEEEEE-TT-SS-EEEE
T ss_pred             EEEeCCCCCCeeEcccCCc----ceeEeEEECC-CCcEEEEEC------------------cccEEEEecCCCccceEEc
Confidence            6666544445665432211    3466777777 577544322                  345654 454322233332


Q ss_pred             c-CCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccce-eeecC--CCC-CCceeeCCCCCEEEEecc
Q 019290          198 N-GLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQ-LFAEM--PRF-PDNIKSDSKGEFWIAMNS  266 (343)
Q Consensus       198 ~-~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~-~~~~~--~~~-p~~i~~d~~G~lwi~~~~  266 (343)
                      . .......+.+.+++. |++.. .++.|..-+...+.  .+.. .+.+.  .+. .-.++.++++++|++...
T Consensus       183 r~~~~riq~~gf~~~~~-lw~~~-~Gg~~~~s~~~~~~--~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~  252 (302)
T PF14870_consen  183 RNSSRRIQSMGFSPDGN-LWMLA-RGGQIQFSDDPDDG--ETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS  252 (302)
T ss_dssp             --SSS-EEEEEE-TTS--EEEEE-TTTEEEEEE-TTEE--EEE---B-TTSS--S-EEEEEESSSS-EEEEEST
T ss_pred             cCccceehhceecCCCC-EEEEe-CCcEEEEccCCCCc--cccccccCCcccCceeeEEEEecCCCCEEEEeCC
Confidence            2 235678888998875 66654 45666554411111  1111 11111  111 112467888999999876

>smart00284 OLF Olfactomedin-like domains

Probab=93.67  E-value=4.3  Score=35.16  Aligned_cols=171  Identities=14%  Similarity=0.152  Sum_probs=88.2

Q ss_pred             ccccCC-CCCCCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEee--ecCCCccccccCCCCCcccCCCc-CCeeeEE
Q 019290           27 QQLQLP-GVVGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFA--TTAPHRAREICDGSTNTTLEPLC-GRPLGIK  102 (343)
Q Consensus        27 ~~~~~~-~~~~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~p~gi~  102 (343)
                      +.+.+| ...+...+++.  |.++|--.....|.+||..++....-.  +.+...           ...+-. +....|.
T Consensus        66 ~~~~Lp~~~~GtG~VVYn--gslYY~~~~s~~iiKydL~t~~v~~~~~Lp~a~y~-----------~~~~Y~~~~~sdiD  132 (255)
T smart00284       66 TDHPLPHAGQGTGVVVYN--GSLYFNKFNSHDICRFDLTTETYQKEPLLNGAGYN-----------NRFPYAWGGFSDID  132 (255)
T ss_pred             eEEECCCccccccEEEEC--ceEEEEecCCccEEEEECCCCcEEEEEecCccccc-----------cccccccCCCccEE
Confidence            444555 23344455554  664454445678999999887654221  111100           000111 1122344


Q ss_pred             EeCCCCeEEEEe---CCCe---EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeee
Q 019290          103 FNPVTCDLYIAD---AYFG---LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIAT  176 (343)
Q Consensus       103 ~~~~~~~l~v~~---~~~g---i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~  176 (343)
                      +..+++.||+.=   ...|   |-++|+++=.++.........+ ..-+.+++.   |.||++++..             
T Consensus       133 lAvDE~GLWvIYat~~~~g~ivvSkLnp~tL~ve~tW~T~~~k~-sa~naFmvC---GvLY~~~s~~-------------  195 (255)
T smart00284      133 LAVDENGLWVIYATEQNAGKIVISKLNPATLTIENTWITTYNKR-SASNAFMIC---GILYVTRSLG-------------  195 (255)
T ss_pred             EEEcCCceEEEEeccCCCCCEEEEeeCcccceEEEEEEcCCCcc-cccccEEEe---eEEEEEccCC-------------
Confidence            443357788761   1224   4588988766655443322221 222444443   7999987531             


Q ss_pred             cCCCce-EEEEeCCCCceEEee----cCCCCcceeEEecCCCEEEEEEcCCCeEEEEEc
Q 019290          177 GDRSGR-LLKYDPLKKNVTVMY----NGLSFPNGVALSNNNSFLLLAESATLKILRFWL  230 (343)
Q Consensus       177 ~~~~~~-v~~~d~~~~~~~~~~----~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~  230 (343)
                       ....+ -+.||..+++...+.    ........+...|..+.||+-+  ++-+..|++
T Consensus       196 -~~~~~I~yayDt~t~~~~~~~i~f~n~y~~~s~l~YNP~d~~LY~wd--ng~~l~Y~v  251 (255)
T smart00284      196 -SKGEKVFYAYDTNTGKEGHLDIPFENMYEYISMLDYNPNDRKLYAWN--NGHLVHYDI  251 (255)
T ss_pred             -CCCcEEEEEEECCCCccceeeeeeccccccceeceeCCCCCeEEEEe--CCeEEEEEE
Confidence             11334 467898766543221    1223345577788888888865  455666664

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=93.66  E-value=4.6  Score=35.48  Aligned_cols=149  Identities=15%  Similarity=0.127  Sum_probs=86.5

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      .-.++-+++.++.|.++..+|.+..|+....++..-.                    .........+|.+ ...+|+++-
T Consensus        15 ~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~--------------------~~~~plL~c~F~d-~~~~~~G~~   73 (323)
T KOG1036|consen   15 GISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF--------------------KHGAPLLDCAFAD-ESTIVTGGL   73 (323)
T ss_pred             ceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe--------------------ecCCceeeeeccC-CceEEEecc
Confidence            4568889988777888889999999987664332111                    1112235677887 789999965


Q ss_pred             CCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEE
Q 019290          116 YFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTV  195 (343)
Q Consensus       116 ~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~  195 (343)
                      ...|.++|+.++....+. ...    ..+..|...+..|.+.- ..                 ....|-.+|+.....  
T Consensus        74 dg~vr~~Dln~~~~~~ig-th~----~~i~ci~~~~~~~~vIs-gs-----------------WD~~ik~wD~R~~~~--  128 (323)
T KOG1036|consen   74 DGQVRRYDLNTGNEDQIG-THD----EGIRCIEYSYEVGCVIS-GS-----------------WDKTIKFWDPRNKVV--  128 (323)
T ss_pred             CceEEEEEecCCcceeec-cCC----CceEEEEeeccCCeEEE-cc-----------------cCccEEEEecccccc--
Confidence            556999999988755442 211    12344444443234333 22                 134577777753211  


Q ss_pred             eecCCCCc-ceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290          196 MYNGLSFP-NGVALSNNNSFLLLAESATLKILRFWLQG  232 (343)
Q Consensus       196 ~~~~~~~~-~~i~~~~d~~~lyv~~~~~~~i~~~~~~~  232 (343)
                       ......+ .--+++-.+..|.|. +.+.++..||+..
T Consensus       129 -~~~~d~~kkVy~~~v~g~~LvVg-~~~r~v~iyDLRn  164 (323)
T KOG1036|consen  129 -VGTFDQGKKVYCMDVSGNRLVVG-TSDRKVLIYDLRN  164 (323)
T ss_pred             -ccccccCceEEEEeccCCEEEEe-ecCceEEEEEccc
Confidence             1111111 222344456667764 3467888898753

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.60  E-value=3.4  Score=37.69  Aligned_cols=185  Identities=14%  Similarity=0.114  Sum_probs=94.9

Q ss_pred             ceEEEcCCCCeeEEEecCCEEEEEE-cCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCC
Q 019290           38 ESLAFDCNGEGPYVGVSDGRILKWK-AANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAY  116 (343)
Q Consensus        38 ~~l~~d~~g~~l~~~~~~g~i~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~  116 (343)
                      ..+++..+|..+=++..+|.+..++ |+-......                    ...-+.+..+.|.+ ++.+.+.-..
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e--------------------~~~~~eV~DL~FS~-dgk~lasig~  206 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEE--------------------IAHHAEVKDLDFSP-DGKFLASIGA  206 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhh--------------------HhhcCccccceeCC-CCcEEEEecC
Confidence            6788888888666666777777777 543211111                    01223467889998 6755554444


Q ss_pred             CeEEEEeCCCCe-EEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCC--CC--
Q 019290          117 FGLMVVGPNGGQ-AQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPL--KK--  191 (343)
Q Consensus       117 ~gi~~~d~~~~~-~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~--~~--  191 (343)
                      ....+++.++|. +.+..+......+..++-...... ..+++++...               +.++|..++..  .+  
T Consensus       207 d~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~-~~l~laa~~~---------------~~~~v~~~~~~~w~~~~  270 (398)
T KOG0771|consen  207 DSARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQ-ETLRLAASQF---------------PGGGVRLCDISLWSGSN  270 (398)
T ss_pred             CceEEEEeccCchhhhcCCcccchhhhhceecccCCC-ceEEEEEecC---------------CCCceeEEEeeeecccc
Confidence            577788887772 111111111112233333332221 3666655431               12223222221  11  


Q ss_pred             --ceEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeec-CCCCCCceeeCCCCCEEEE
Q 019290          192 --NVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAE-MPRFPDNIKSDSKGEFWIA  263 (343)
Q Consensus       192 --~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~G~lwi~  263 (343)
                        +.+...........++++.||+.+-+. +.++.|..++...=   .....+.+ -.++..++.+.||-+....
T Consensus       271 ~l~~~~~~~~~~siSsl~VS~dGkf~AlG-T~dGsVai~~~~~l---q~~~~vk~aH~~~VT~ltF~Pdsr~~~s  341 (398)
T KOG0771|consen  271 FLRLRKKIKRFKSISSLAVSDDGKFLALG-TMDGSVAIYDAKSL---QRLQYVKEAHLGFVTGLTFSPDSRYLAS  341 (398)
T ss_pred             ccchhhhhhccCcceeEEEcCCCcEEEEe-ccCCcEEEEEecee---eeeEeehhhheeeeeeEEEcCCcCcccc
Confidence              222223344567889999999866554 55889999885431   12222222 1234556667666544443

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=93.59  E-value=7.3  Score=37.52  Aligned_cols=82  Identities=9%  Similarity=0.138  Sum_probs=48.1

Q ss_pred             CceEEEEeCCCCceE-EeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCC
Q 019290          180 SGRLLKYDPLKKNVT-VMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKG  258 (343)
Q Consensus       180 ~~~v~~~d~~~~~~~-~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G  258 (343)
                      ..+|+.++...+... .+......+....|+|...+++|+.  ...|..|++.....   .+.+.......+.|.+++.|
T Consensus       545 ~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT--q~~vRiYdL~kqel---vKkL~tg~kwiS~msihp~G  619 (733)
T KOG0650|consen  545 NKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT--QRSVRIYDLSKQEL---VKKLLTGSKWISSMSIHPNG  619 (733)
T ss_pred             cceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe--ccceEEEehhHHHH---HHHHhcCCeeeeeeeecCCC
Confidence            445777766433221 1112223467888999888888875  46788898765221   11111122246678888877


Q ss_pred             -CEEEEecc
Q 019290          259 -EFWIAMNS  266 (343)
Q Consensus       259 -~lwi~~~~  266 (343)
                       +|.+++..
T Consensus       620 Dnli~gs~d  628 (733)
T KOG0650|consen  620 DNLILGSYD  628 (733)
T ss_pred             CeEEEecCC
Confidence             67777665

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=93.49  E-value=5.3  Score=35.68  Aligned_cols=37  Identities=19%  Similarity=0.266  Sum_probs=26.9

Q ss_pred             cCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEe
Q 019290          142 RFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVM  196 (343)
Q Consensus       142 ~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~  196 (343)
                      .++|++..++ +|.+.++-..                 ...|+++|+.+|++.-.
T Consensus       144 ~HiNsV~~~~-~G~yLiS~R~-----------------~~~i~~I~~~tG~I~W~  180 (299)
T PF14269_consen  144 FHINSVDKDD-DGDYLISSRN-----------------TSTIYKIDPSTGKIIWR  180 (299)
T ss_pred             cEeeeeeecC-CccEEEEecc-----------------cCEEEEEECCCCcEEEE
Confidence            4578888888 5888887655                 45688888887776543

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=93.48  E-value=2.2  Score=38.91  Aligned_cols=155  Identities=15%  Similarity=0.093  Sum_probs=94.4

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCC-CeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEe
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANS-GWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIAD  114 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~  114 (343)
                      ...+++++++...+.+.+.+|.|..+|..-. +-..+                    ......+..+..++.++.|..+.
T Consensus       182 aIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL--------------------~GHgwdVksvdWHP~kgLiasgs  241 (464)
T KOG0284|consen  182 AIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVL--------------------RGHGWDVKSVDWHPTKGLIASGS  241 (464)
T ss_pred             hhheeccCCCCceeEEecCCCeEEEEeccCCchhhee--------------------ccCCCCcceeccCCccceeEEcc
Confidence            4679999998776777889999999986432 11111                    12233467788888666666653


Q ss_pred             CCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCC-CCce
Q 019290          115 AYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPL-KKNV  193 (343)
Q Consensus       115 ~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~-~~~~  193 (343)
                      ..+=|-.+|+++|.  .+.....-  -+.+..+.+.++ ++...+.+.                 ...+-.||.. -+++
T Consensus       242 kDnlVKlWDprSg~--cl~tlh~H--KntVl~~~f~~n-~N~Llt~sk-----------------D~~~kv~DiR~mkEl  299 (464)
T KOG0284|consen  242 KDNLVKLWDPRSGS--CLATLHGH--KNTVLAVKFNPN-GNWLLTGSK-----------------DQSCKVFDIRTMKEL  299 (464)
T ss_pred             CCceeEeecCCCcc--hhhhhhhc--cceEEEEEEcCC-CCeeEEccC-----------------CceEEEEehhHhHHH
Confidence            33436678998875  23222111  145677888884 754443332                 2345556654 2233


Q ss_pred             EEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290          194 TVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQG  232 (343)
Q Consensus       194 ~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~  232 (343)
                      .++...-.....++++|-...|+.+.-.+++|+.+.+..
T Consensus       300 ~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~  338 (464)
T KOG0284|consen  300 FTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGL  338 (464)
T ss_pred             HHhhcchhhheeeccccccccceeeccCCCceEEEeccc
Confidence            333333345667777776667888877789999988763

>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []

Probab=93.41  E-value=4.8  Score=34.91  Aligned_cols=156  Identities=14%  Similarity=0.098  Sum_probs=82.3

Q ss_pred             CCCeeEEEecCCEEEEEEcCCCCeE-EeeecCCCccccccCCCCCcccCCCcCCe-eeEEEeCCCCeEEEEe---CCCe-
Q 019290           45 NGEGPYVGVSDGRILKWKAANSGWT-EFATTAPHRAREICDGSTNTTLEPLCGRP-LGIKFNPVTCDLYIAD---AYFG-  118 (343)
Q Consensus        45 ~g~~l~~~~~~g~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~gi~~~~~~~~l~v~~---~~~g-  118 (343)
                      +|.++|--.....|.+||..++... ....+....          ....+-...+ ..+.+..+++.||+.=   ...| 
T Consensus        78 ngslYY~~~~s~~IvkydL~t~~v~~~~~L~~A~~----------~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~  147 (250)
T PF02191_consen   78 NGSLYYNKYNSRNIVKYDLTTRSVVARRELPGAGY----------NNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGN  147 (250)
T ss_pred             CCcEEEEecCCceEEEEECcCCcEEEEEECCcccc----------ccccceecCCCceEEEEEcCCCEEEEEecCCCCCc
Confidence            4554454456788999999987665 322111000          0001111112 2344433357788761   1233 


Q ss_pred             --EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCce-EEEEeCCCCceEE
Q 019290          119 --LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGR-LLKYDPLKKNVTV  195 (343)
Q Consensus       119 --i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~-v~~~d~~~~~~~~  195 (343)
                        |-++|+++-.++.........+ ..-+.+++  . |-||+++...              ..... -+.||..+++.+.
T Consensus       148 ivvskld~~tL~v~~tw~T~~~k~-~~~naFmv--C-GvLY~~~s~~--------------~~~~~I~yafDt~t~~~~~  209 (250)
T PF02191_consen  148 IVVSKLDPETLSVEQTWNTSYPKR-SAGNAFMV--C-GVLYATDSYD--------------TRDTEIFYAFDTYTGKEED  209 (250)
T ss_pred             EEEEeeCcccCceEEEEEeccCch-hhcceeeE--e-eEEEEEEECC--------------CCCcEEEEEEECCCCceec
Confidence              5688888766655433322111 22233333  3 7899987652              11233 4678887665543


Q ss_pred             ee----cCCCCcceeEEecCCCEEEEEEcCCCeEEEEEc
Q 019290          196 MY----NGLSFPNGVALSNNNSFLLLAESATLKILRFWL  230 (343)
Q Consensus       196 ~~----~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~  230 (343)
                      +.    .......-+...|..+.||+-+.  +.+..|++
T Consensus       210 ~~i~f~~~~~~~~~l~YNP~dk~LY~wd~--G~~v~Y~v  246 (250)
T PF02191_consen  210 VSIPFPNPYGNISMLSYNPRDKKLYAWDN--GYQVTYDV  246 (250)
T ss_pred             eeeeeccccCceEeeeECCCCCeEEEEEC--CeEEEEEE
Confidence            22    22334566778888888888763  55666664

Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=93.36  E-value=3.1  Score=41.09  Aligned_cols=131  Identities=11%  Similarity=0.098  Sum_probs=80.5

Q ss_pred             eEEEEeCCCCceEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCE-
Q 019290          182 RLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEF-  260 (343)
Q Consensus       182 ~v~~~d~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l-  260 (343)
                      .|-.|++...+.-.....-.....++|.|.....+++.+-++.+..|.+..    .+...+.++..+...++..|||+. 
T Consensus       391 TVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d----~~Vv~W~Dl~~lITAvcy~PdGk~a  466 (712)
T KOG0283|consen  391 TVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISD----KKVVDWNDLRDLITAVCYSPDGKGA  466 (712)
T ss_pred             cEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeecccccceEEeecCc----CeeEeehhhhhhheeEEeccCCceE
Confidence            344445544444444455567789999998777888999999999999865    333344445556778889999965 


Q ss_pred             EEEeccCCCccccccccccccccCCCcccCCCeEEEECCCCCE-EEEe--eCC-CCC-ccCCceeEEEe---CCEEEEec
Q 019290          261 WIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNV-VDVL--DGN-EGN-TLNSVSEVQEY---GEYLYTGS  332 (343)
Q Consensus       261 wi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~-~~~~--~~~-~~~-~~~~~~~~~~~---~g~l~i~~  332 (343)
                      .|++..                         |....|+..+.. ....  ... ..+ ....+++.+..   ..+|.|++
T Consensus       467 vIGt~~-------------------------G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTS  521 (712)
T KOG0283|consen  467 VIGTFN-------------------------GYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTS  521 (712)
T ss_pred             EEEEec-------------------------cEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEec
Confidence            556655                         345556665433 2222  211 111 22246666543   34677777


Q ss_pred             CCCCeEEEEc
Q 019290          333 SVQPYVVVIK  342 (343)
Q Consensus       333 ~~~~~i~~~~  342 (343)
                      .++ +|..|+
T Consensus       522 nDS-rIRI~d  530 (712)
T KOG0283|consen  522 NDS-RIRIYD  530 (712)
T ss_pred             CCC-ceEEEe
Confidence            766 566554

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=93.24  E-value=7.1  Score=36.39  Aligned_cols=98  Identities=16%  Similarity=0.172  Sum_probs=55.2

Q ss_pred             ceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCCC
Q 019290           38 ESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYF  117 (343)
Q Consensus        38 ~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~~  117 (343)
                      -+|-+..+|+.+.++.-++.+..||..++.+......        +             ...++.++..++.=+++....
T Consensus       280 ~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~--------~-------------s~~~lDVdW~~~~~F~ts~td  338 (524)
T KOG0273|consen  280 FSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEF--------H-------------SAPALDVDWQSNDEFATSSTD  338 (524)
T ss_pred             EEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeee--------c-------------cCCccceEEecCceEeecCCC
Confidence            4777888899777777888899999877665543210        0             011233333233333332333


Q ss_pred             e-EEEEeCCC-CeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCC
Q 019290          118 G-LMVVGPNG-GQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSS  162 (343)
Q Consensus       118 g-i~~~d~~~-~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~  162 (343)
                      + |+++-... +.++.+..     ..+.++.+..++. |.|..+.+.
T Consensus       339 ~~i~V~kv~~~~P~~t~~G-----H~g~V~alk~n~t-g~LLaS~Sd  379 (524)
T KOG0273|consen  339 GCIHVCKVGEDRPVKTFIG-----HHGEVNALKWNPT-GSLLASCSD  379 (524)
T ss_pred             ceEEEEEecCCCcceeeec-----ccCceEEEEECCC-CceEEEecC
Confidence            3 44443322 22332321     2256889999995 898887664

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=93.16  E-value=6.6  Score=35.76  Aligned_cols=163  Identities=13%  Similarity=0.059  Sum_probs=90.1

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCe-EEEEe
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCD-LYIAD  114 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~-l~v~~  114 (343)
                      ....|.+..+|+.|..+..+.++..|+.+..-....+.            ++...-.+....+..+.|+. +++ ||-+ 
T Consensus        58 CiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~K------------PI~~~~~~H~SNIF~L~F~~-~N~~~~SG-  123 (609)
T KOG4227|consen   58 CINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPK------------PIGVMEHPHRSNIFSLEFDL-ENRFLYSG-  123 (609)
T ss_pred             ccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCC------------CceeccCccccceEEEEEcc-CCeeEecC-
Confidence            46678888888866666666566666543311111100            00000112223467888998 554 5544 


Q ss_pred             CCCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCC--
Q 019290          115 AYFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKK--  191 (343)
Q Consensus       115 ~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~--  191 (343)
                      ...| |.+-|.++.+...++.....  -..++++.+.|. ++++++...                 .+.|..+|....  
T Consensus       124 ~~~~~VI~HDiEt~qsi~V~~~~~~--~~~VY~m~~~P~-DN~~~~~t~-----------------~~~V~~~D~Rd~~~  183 (609)
T KOG4227|consen  124 ERWGTVIKHDIETKQSIYVANENNN--RGDVYHMDQHPT-DNTLIVVTR-----------------AKLVSFIDNRDRQN  183 (609)
T ss_pred             CCcceeEeeecccceeeeeecccCc--ccceeecccCCC-CceEEEEec-----------------CceEEEEeccCCCC
Confidence            3344 88888887665444322111  124678888886 444443322                 456777765322  


Q ss_pred             --ceEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290          192 --NVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQG  232 (343)
Q Consensus       192 --~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~  232 (343)
                        ....+...........|.|..-.|..+....+++-+|+..-
T Consensus       184 ~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~  226 (609)
T KOG4227|consen  184 PISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRM  226 (609)
T ss_pred             CCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeecc
Confidence              22233333344455667887777888777778888888654

>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=93.07  E-value=0.66  Score=27.86  Aligned_cols=40  Identities=25%  Similarity=0.405  Sum_probs=29.7

Q ss_pred             CeEEEEeCCcccccccceeeeeecCCCc-eEEEEeCCCCceEE-eecCCCCcceeEEec
Q 019290          154 GIVYFTDSSIYFQRRQYFMSIATGDRSG-RLLKYDPLKKNVTV-MYNGLSFPNGVALSN  210 (343)
Q Consensus       154 g~l~v~~~~~~~~~~~~~~~~~~~~~~~-~v~~~d~~~~~~~~-~~~~~~~~~~i~~~~  210 (343)
                      ++||++|..                 .. .|.+.+.++...+. +..++..|++|++++
T Consensus         1 ~~iYWtD~~-----------------~~~~I~~a~~dGs~~~~vi~~~l~~P~giaVD~   42 (42)
T PF00058_consen    1 GKIYWTDWS-----------------QDPSIERANLDGSNRRTVISDDLQHPEGIAVDW   42 (42)
T ss_dssp             TEEEEEETT-----------------TTEEEEEEETTSTSEEEEEESSTSSEEEEEEET
T ss_pred             CEEEEEECC-----------------CCcEEEEEECCCCCeEEEEECCCCCcCEEEECC
Confidence            578999876                 34 78888887666444 456788999999874

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=93.07  E-value=9.5  Score=37.34  Aligned_cols=42  Identities=12%  Similarity=0.191  Sum_probs=32.6

Q ss_pred             ccccccCCCCCCCceEEEcCCCCeeEEEecCCEEEEEEcCCCC
Q 019290           25 SYQQLQLPGVVGPESLAFDCNGEGPYVGVSDGRILKWKAANSG   67 (343)
Q Consensus        25 ~~~~~~~~~~~~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~   67 (343)
                      +.+.+..++....+++++.|||..+..+ .+.+++.||++.+.
T Consensus         3 ~~~~~r~~~~hci~d~afkPDGsqL~lA-Ag~rlliyD~ndG~   44 (1081)
T KOG1538|consen    3 AVLTWRDKAEHCINDIAFKPDGTQLILA-AGSRLLVYDTSDGT   44 (1081)
T ss_pred             hhhhhhcccccchheeEECCCCceEEEe-cCCEEEEEeCCCcc
Confidence            3455666776788999999999977765 56789999997654

>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]

Probab=92.80  E-value=12  Score=39.04  Aligned_cols=190  Identities=16%  Similarity=0.244  Sum_probs=109.0

Q ss_pred             eeeEEEeCCCCeEEEEeCCC-eEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeee
Q 019290           98 PLGIKFNPVTCDLYIADAYF-GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIAT  176 (343)
Q Consensus        98 p~gi~~~~~~~~l~v~~~~~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~  176 (343)
                      +..+.++...+.+|.++... .+............+.    ....-.+.++++|..++.+|++|..              
T Consensus       439 ~~~~d~d~~~~~i~~~d~~~~~i~~~~~~~~~~~~~~----~~g~~~~~~lavD~~~~~~y~tDe~--------------  500 (877)
T KOG1215|consen  439 AVALDFDVLNNRIYWADLSDEKICRASQDGSSECELC----GDGLCIPEGLAVDWIGDNIYWTDEG--------------  500 (877)
T ss_pred             ceEEEEEecCCEEEEEeccCCeEeeeccCCCccceEe----ccCccccCcEEEEeccCCceecccC--------------
Confidence            34555555456788887543 3666555433333211    1112457789999877899998876              


Q ss_pred             cCCCceEEEEeCCCCceEE-eecCCCCcceeEEecCCCEEEEEEcCC-CeEEEEEccCccccccceeeecC-CCCCCcee
Q 019290          177 GDRSGRLLKYDPLKKNVTV-MYNGLSFPNGVALSNNNSFLLLAESAT-LKILRFWLQGERTTYTPQLFAEM-PRFPDNIK  253 (343)
Q Consensus       177 ~~~~~~v~~~d~~~~~~~~-~~~~~~~~~~i~~~~d~~~lyv~~~~~-~~i~~~~~~~~~~~~~~~~~~~~-~~~p~~i~  253 (343)
                         ...+.+.+.++..... +...+..+..+++++-...+||++... .+|.+-.+++.    ....+... ...|++++
T Consensus       501 ---~~~i~v~~~~g~~~~vl~~~~l~~~r~~~v~p~~g~~~wtd~~~~~~i~ra~~dg~----~~~~l~~~~~~~p~glt  573 (877)
T KOG1215|consen  501 ---NCLIEVADLDGSSRKVLVSKDLDLPRSIAVDPEKGLMFWTDWGQPPRIERASLDGS----ERAVLVTNGILWPNGLT  573 (877)
T ss_pred             ---CceeEEEEccCCceeEEEecCCCCccceeeccccCeeEEecCCCCchhhhhcCCCC----CceEEEeCCccCCCcce
Confidence               2334444433222223 334456789999999989999998752 35666666653    22333322 35699999


Q ss_pred             eCC-CCCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECCCCCEEEEeeCCCCCccCCceeEEEeCCEEEEec
Q 019290          254 SDS-KGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEGNTLNSVSEVQEYGEYLYTGS  332 (343)
Q Consensus       254 ~d~-~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~  332 (343)
                      +|- +..+|-++....                       ..+.+.+-+|+...... ..  ....+..+....+++|-..
T Consensus       574 ~d~~~~~~yw~d~~~~-----------------------~~i~~~~~~g~~r~~~~-~~--~~~~p~~~~~~~~~iyw~d  627 (877)
T KOG1215|consen  574 IDYETDRLYWADAKLD-----------------------YTIESANMDGQNRRVVD-SE--DLPHPFGLSVFEDYIYWTD  627 (877)
T ss_pred             EEeecceeEEEcccCC-----------------------cceeeeecCCCceEEec-cc--cCCCceEEEEecceeEEee
Confidence            986 456766665411                       14556666665544221 11  1233444444567777666


Q ss_pred             CCCCeE
Q 019290          333 SVQPYV  338 (343)
Q Consensus       333 ~~~~~i  338 (343)
                      .....+
T Consensus       628 ~~~~~~  633 (877)
T KOG1215|consen  628 WSNRAI  633 (877)
T ss_pred             ccccce
Confidence            665543

>PLN02153 epithiospecifier protein

Probab=92.76  E-value=7.5  Score=35.35  Aligned_cols=117  Identities=12%  Similarity=0.064  Sum_probs=59.0

Q ss_pred             EEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCC------CeEEEEeCCCCeEE
Q 019290           57 RILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAY------FGLMVVGPNGGQAQ  130 (343)
Q Consensus        57 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~------~gi~~~d~~~~~~~  130 (343)
                      .+++||+.+.+|.........+              .....-+.++..  ++.||+-...      +.+++||+++.+++
T Consensus        51 ~~~~yd~~~~~W~~~~~~~~~p--------------~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~  114 (341)
T PLN02153         51 DLYVFDFNTHTWSIAPANGDVP--------------RISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDTVKNEWT  114 (341)
T ss_pred             cEEEEECCCCEEEEcCccCCCC--------------CCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEECCCCEEE
Confidence            5899999998887653211000              000001233333  4677766221      24889999988888


Q ss_pred             EcccccC-CCCc-cCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEee
Q 019290          131 QLASSAG-GIPF-RFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMY  197 (343)
Q Consensus       131 ~~~~~~~-~~~~-~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~  197 (343)
                      .+..... ..+. ..-+.+++..  +.||+--.....+.      ......-..+++||+++.+.+.+.
T Consensus       115 ~~~~~~~~~~p~~R~~~~~~~~~--~~iyv~GG~~~~~~------~~~~~~~~~v~~yd~~~~~W~~l~  175 (341)
T PLN02153        115 FLTKLDEEGGPEARTFHSMASDE--NHVYVFGGVSKGGL------MKTPERFRTIEAYNIADGKWVQLP  175 (341)
T ss_pred             EeccCCCCCCCCCceeeEEEEEC--CEEEEECCccCCCc------cCCCcccceEEEEECCCCeEeeCC
Confidence            7643211 1111 1223444443  78888432100000      000000135889999888877654

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=92.60  E-value=2.9  Score=39.35  Aligned_cols=102  Identities=18%  Similarity=0.125  Sum_probs=60.7

Q ss_pred             ceEEEEeCCCCceEEeecCCCCcceeEEecCCCEEEEEEcCC--CeEEEEEccCccccccceeeecCCCCCCceeeCCCC
Q 019290          181 GRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESAT--LKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKG  258 (343)
Q Consensus       181 ~~v~~~d~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G  258 (343)
                      ..+++++.++++...+.+-........++|||+.|.++...+  -.||.+|+++..    ...+....+....-...+||
T Consensus       218 ~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~----~~~Lt~~~gi~~~Ps~spdG  293 (425)
T COG0823         218 PRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN----LPRLTNGFGINTSPSWSPDG  293 (425)
T ss_pred             ceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc----ceecccCCccccCccCCCCC
Confidence            468888888777666655334445667889999888876554  457777776632    22233322222233456777


Q ss_pred             C-EEEEeccCCCccccccccccccccCCCcccCCCeEEEECCCCCEEEEee
Q 019290          259 E-FWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLD  308 (343)
Q Consensus       259 ~-lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~  308 (343)
                      + |..++...+.                      ..|++++++|+....+.
T Consensus       294 ~~ivf~Sdr~G~----------------------p~I~~~~~~g~~~~riT  322 (425)
T COG0823         294 SKIVFTSDRGGR----------------------PQIYLYDLEGSQVTRLT  322 (425)
T ss_pred             CEEEEEeCCCCC----------------------cceEEECCCCCceeEee
Confidence            4 4444443222                      36788888877655543

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=92.49  E-value=9.9  Score=37.69  Aligned_cols=164  Identities=16%  Similarity=0.137  Sum_probs=98.4

Q ss_pred             ccccccccCCCCCCCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEE
Q 019290           23 SKSYQQLQLPGVVGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIK  102 (343)
Q Consensus        23 ~~~~~~~~~~~~~~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~  102 (343)
                      .+..++++++.  ..-++.++|||.++.++--+..+-.|-.++-++  |..-                 +...-.+..|.
T Consensus       499 l~~~rtLel~d--dvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKF--flsL-----------------YGHkLPV~smD  557 (888)
T KOG0306|consen  499 LKHTRTLELED--DVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKF--FLSL-----------------YGHKLPVLSMD  557 (888)
T ss_pred             eccceEEeccc--cEEEEEEcCCCcEEEEEeccCeEEEEEecceee--eeee-----------------cccccceeEEe
Confidence            44557777775  578999999999777887777777766666433  2210                 11111245777


Q ss_pred             EeCCCCeEEEEeCCC-eEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCc
Q 019290          103 FNPVTCDLYIADAYF-GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSG  181 (343)
Q Consensus       103 ~~~~~~~l~v~~~~~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~  181 (343)
                      +++ +..+.++...+ .|-.+.++=|.=+.-....    ...+..+.+-|+ ..++|+...                 .+
T Consensus       558 IS~-DSklivTgSADKnVKiWGLdFGDCHKS~fAH----dDSvm~V~F~P~-~~~FFt~gK-----------------D~  614 (888)
T KOG0306|consen  558 ISP-DSKLIVTGSADKNVKIWGLDFGDCHKSFFAH----DDSVMSVQFLPK-THLFFTCGK-----------------DG  614 (888)
T ss_pred             ccC-CcCeEEeccCCCceEEeccccchhhhhhhcc----cCceeEEEEccc-ceeEEEecC-----------------cc
Confidence            887 56666654333 3555544434322211111    134667778884 788886643                 45


Q ss_pred             eEEEEeCCCCc-eEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEcc
Q 019290          182 RLLKYDPLKKN-VTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQ  231 (343)
Q Consensus       182 ~v~~~d~~~~~-~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~  231 (343)
                      .|-+||.+.-+ +..+.........+++.|+|++ .|+.+.+..|..|...
T Consensus       615 kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~-vvs~shD~sIRlwE~t  664 (888)
T KOG0306|consen  615 KVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSF-VVSSSHDKSIRLWERT  664 (888)
T ss_pred             eEEeechhhhhhheeeccchheeeeeEEcCCCCe-EEeccCCceeEeeecc
Confidence            67778754211 2233344556788999999984 4566667888888754

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=92.28  E-value=2.6  Score=37.64  Aligned_cols=151  Identities=14%  Similarity=0.105  Sum_probs=86.2

Q ss_pred             ceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCCC
Q 019290           38 ESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYF  117 (343)
Q Consensus        38 ~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~~  117 (343)
                      .-+|.+-+.+++..+..+..+..||-++++.....                   ......+.++.+..  |.+.-+....
T Consensus       239 SVLCLqyd~rviisGSSDsTvrvWDv~tge~l~tl-------------------ihHceaVLhlrf~n--g~mvtcSkDr  297 (499)
T KOG0281|consen  239 SVLCLQYDERVIVSGSSDSTVRVWDVNTGEPLNTL-------------------IHHCEAVLHLRFSN--GYMVTCSKDR  297 (499)
T ss_pred             cEEeeeccceEEEecCCCceEEEEeccCCchhhHH-------------------hhhcceeEEEEEeC--CEEEEecCCc
Confidence            44555555567788889999999999887643211                   12223456677763  4444443334


Q ss_pred             eEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEee
Q 019290          118 GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMY  197 (343)
Q Consensus       118 gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~  197 (343)
                      .+..+|.....-..+.....+. ...+|.+.+|.   ++.++.++                 .-.|-.++..+++..+..
T Consensus       298 siaVWdm~sps~it~rrVLvGH-rAaVNvVdfd~---kyIVsASg-----------------DRTikvW~~st~efvRtl  356 (499)
T KOG0281|consen  298 SIAVWDMASPTDITLRRVLVGH-RAAVNVVDFDD---KYIVSASG-----------------DRTIKVWSTSTCEFVRTL  356 (499)
T ss_pred             eeEEEeccCchHHHHHHHHhhh-hhheeeecccc---ceEEEecC-----------------CceEEEEeccceeeehhh
Confidence            4666666532211111112221 13455555443   55665554                 334666777777765443


Q ss_pred             cCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290          198 NGLSFPNGVALSNNNSFLLLAESATLKILRFWLQG  232 (343)
Q Consensus       198 ~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~  232 (343)
                      .  .+..|||-..-.+.+.|+.+.+++|..|++..
T Consensus       357 ~--gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~  389 (499)
T KOG0281|consen  357 N--GHKRGIACLQYRDRLVVSGSSDNTIRLWDIEC  389 (499)
T ss_pred             h--cccccceehhccCeEEEecCCCceEEEEeccc
Confidence            3  23455554444456899999999999999874

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=92.23  E-value=8.4  Score=34.67  Aligned_cols=165  Identities=16%  Similarity=0.131  Sum_probs=90.9

Q ss_pred             ccccccCCCCCCCceEEEcC---C----CCeeEEEec---------C-CEEEEEEcCCC-----CeEEeeecCCCccccc
Q 019290           25 SYQQLQLPGVVGPESLAFDC---N----GEGPYVGVS---------D-GRILKWKAANS-----GWTEFATTAPHRAREI   82 (343)
Q Consensus        25 ~~~~~~~~~~~~p~~l~~d~---~----g~~l~~~~~---------~-g~i~~~d~~~~-----~~~~~~~~~~~~~~~~   82 (343)
                      .+.+++++....+.+++.-.   +    ...+.+++.         . |+|+.|+....     ++..+...        
T Consensus        14 ~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~--------   85 (321)
T PF03178_consen   14 VLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHST--------   85 (321)
T ss_dssp             EEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEE--------
T ss_pred             EEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEE--------
Confidence            34566666555566555432   2    233444432         2 88998887663     33333210        


Q ss_pred             cCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCCCeEEEEeCCCCe-EEEcccccCCCCccCcceeEEeCCCCeEEEEeC
Q 019290           83 CDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFGLMVVGPNGGQ-AQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDS  161 (343)
Q Consensus        83 ~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~~gi~~~d~~~~~-~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~  161 (343)
                                ...+.+..++.-  ++.|.++ .+..|+.++.+..+ +.........   ..+.++....  +.++++|.
T Consensus        86 ----------~~~g~V~ai~~~--~~~lv~~-~g~~l~v~~l~~~~~l~~~~~~~~~---~~i~sl~~~~--~~I~vgD~  147 (321)
T PF03178_consen   86 ----------EVKGPVTAICSF--NGRLVVA-VGNKLYVYDLDNSKTLLKKAFYDSP---FYITSLSVFK--NYILVGDA  147 (321)
T ss_dssp             ----------EESS-EEEEEEE--TTEEEEE-ETTEEEEEEEETTSSEEEEEEE-BS---SSEEEEEEET--TEEEEEES
T ss_pred             ----------eecCcceEhhhh--CCEEEEe-ecCEEEEEEccCcccchhhheecce---EEEEEEeccc--cEEEEEEc
Confidence                      112345667666  4677777 46777777776665 5554332211   2466676665  69999886


Q ss_pred             CcccccccceeeeeecCCCceEEEEeCCCCceEEeecCCCC--cceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290          162 SIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSF--PNGVALSNNNSFLLLAESATLKILRFWLQG  232 (343)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~--~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~  232 (343)
                      ..                +-.+++|+.+..++..+..+...  ...+++-.+++.+.+++ ..+.|+.+..+.
T Consensus       148 ~~----------------sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D-~~gnl~~l~~~~  203 (321)
T PF03178_consen  148 MK----------------SVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGD-KDGNLFVLRYNP  203 (321)
T ss_dssp             SS----------------SEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEE-TTSEEEEEEE-S
T ss_pred             cc----------------CEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEc-CCCeEEEEEECC
Confidence            42                33577888765556655544332  33444444555555554 578888887653

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=92.23  E-value=6.2  Score=40.03  Aligned_cols=154  Identities=12%  Similarity=0.084  Sum_probs=86.4

Q ss_pred             CCceEEEcCCC-CeeEEE-ecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeE-------EEeCC
Q 019290           36 GPESLAFDCNG-EGPYVG-VSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGI-------KFNPV  106 (343)
Q Consensus        36 ~p~~l~~d~~g-~~l~~~-~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi-------~~~~~  106 (343)
                      .|..+...... +.+..+ .+...||++|.+++++..=....                  .......+       .+++ 
T Consensus       482 ~P~k~mL~~~d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~------------------~~~~v~~~~p~~K~aqlt~-  542 (794)
T PF08553_consen  482 TPKKAMLHDQDRNMILLDPNNPNKLYKMDLERGKVVEEWKVH------------------DDIPVVDIAPDSKFAQLTN-  542 (794)
T ss_pred             CcchhhhhccccceEeecCCCCCceEEEecCCCcEEEEeecC------------------CCcceeEecccccccccCC-
Confidence            46666655543 333443 34578999999887654221111                  00001112       1232 


Q ss_pred             CCeEEEEeCCCeEEEEeCCCCeEEEc-ccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEE
Q 019290          107 TCDLYIADAYFGLMVVGPNGGQAQQL-ASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLK  185 (343)
Q Consensus       107 ~~~l~v~~~~~gi~~~d~~~~~~~~~-~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~  185 (343)
                       ...|+|-..++++++|++-..-+.+ .....-...+....++-+. +|.|.++..                  .|.|-.
T Consensus       543 -e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~-~G~iavgs~------------------~G~IRL  602 (794)
T PF08553_consen  543 -EQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTE-DGYIAVGSN------------------KGDIRL  602 (794)
T ss_pred             -CceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecC-CceEEEEeC------------------CCcEEe
Confidence             3566666678899999975321111 1111112224456778888 599988554                  566777


Q ss_pred             EeCCCCceEEeecCC-CCcceeEEecCCCEEEEEEcCCCeEEEEEc
Q 019290          186 YDPLKKNVTVMYNGL-SFPNGVALSNNNSFLLLAESATLKILRFWL  230 (343)
Q Consensus       186 ~d~~~~~~~~~~~~~-~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~  230 (343)
                      ||.-+.+-++...++ ....+++++.||+.+..+.  ...|..++.
T Consensus       603 yd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc--~tyLlLi~t  646 (794)
T PF08553_consen  603 YDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC--KTYLLLIDT  646 (794)
T ss_pred             ecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee--cceEEEEEE
Confidence            776544444445454 4467999999998665543  456666664

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats

Probab=92.22  E-value=0.24  Score=25.77  Aligned_cols=20  Identities=10%  Similarity=0.047  Sum_probs=15.6

Q ss_pred             ccCcceeEEeCCCCeEEEEeC
Q 019290          141 FRFTNDLDIDPNTGIVYFTDS  161 (343)
Q Consensus       141 ~~~~~~i~~d~~dg~l~v~~~  161 (343)
                      .+.+.++..|+ +|+||+++.
T Consensus         4 ~n~I~~i~~D~-~G~lWigT~   23 (24)
T PF07494_consen    4 NNNIYSIYEDS-DGNLWIGTY   23 (24)
T ss_dssp             SSCEEEEEE-T-TSCEEEEET
T ss_pred             CCeEEEEEEcC-CcCEEEEeC
Confidence            35788999999 599999764

These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.

>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]

Probab=92.17  E-value=7  Score=33.65  Aligned_cols=84  Identities=19%  Similarity=0.296  Sum_probs=50.0

Q ss_pred             eEEEEeCCCCceEEee-------cCCCCcceeEEecCC---CEEEEEEcCCCeEEEEEccC--cccccc--ceeeecCCC
Q 019290          182 RLLKYDPLKKNVTVMY-------NGLSFPNGVALSNNN---SFLLLAESATLKILRFWLQG--ERTTYT--PQLFAEMPR  247 (343)
Q Consensus       182 ~v~~~d~~~~~~~~~~-------~~~~~~~~i~~~~d~---~~lyv~~~~~~~i~~~~~~~--~~~~~~--~~~~~~~~~  247 (343)
                      .+|.+|++.+.++.+.       +..+.+.|+++..+.   ....+.+...+.+..|.+-.  ++..+.  .+.| +.+.
T Consensus       127 ~~y~Idp~~~~L~sitD~n~p~ss~~s~~YGl~lyrs~ktgd~yvfV~~~qG~~~Qy~l~d~gnGkv~~k~vR~f-k~~t  205 (364)
T COG4247         127 VFYKIDPNPQYLESITDSNAPYSSSSSSAYGLALYRSPKTGDYYVFVNRRQGDIAQYKLIDQGNGKVGTKLVRQF-KIPT  205 (364)
T ss_pred             EEEEeCCCccceeeccCCCCccccCcccceeeEEEecCCcCcEEEEEecCCCceeEEEEEecCCceEcceeeEee-ecCC
Confidence            4677888776665443       335667889887653   33233445568888888653  222111  1222 2444


Q ss_pred             CCCceeeCC-CCCEEEEecc
Q 019290          248 FPDNIKSDS-KGEFWIAMNS  266 (343)
Q Consensus       248 ~p~~i~~d~-~G~lwi~~~~  266 (343)
                      ...|++.|. -|.|||+.-+
T Consensus       206 QTEG~VaDdEtG~LYIaeEd  225 (364)
T COG4247         206 QTEGMVADDETGFLYIAEED  225 (364)
T ss_pred             cccceeeccccceEEEeecc
Confidence            567887754 5999999765

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=92.04  E-value=4.4  Score=41.31  Aligned_cols=117  Identities=15%  Similarity=0.230  Sum_probs=62.2

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCC-CCeEEeeec--CCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEE
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAAN-SGWTEFATT--APHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYI  112 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v  112 (343)
                      ...|+-+.+||..+.++..+.-|+.+.... +.-..+-..  ..+.. +-   -.........+.+..++.++ ++.+++
T Consensus        71 sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE-~w---k~~~~l~~H~~DV~Dv~Wsp-~~~~lv  145 (942)
T KOG0973|consen   71 SVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVE-SW---KVVSILRGHDSDVLDVNWSP-DDSLLV  145 (942)
T ss_pred             ceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccc-ee---eEEEEEecCCCccceeccCC-CccEEE
Confidence            467888999999777887777666665542 110111000  00000 00   00000001122345667777 666666


Q ss_pred             EeCC-CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCC
Q 019290          113 ADAY-FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSS  162 (343)
Q Consensus       113 ~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~  162 (343)
                      .... +.|..+|..+.+........    ...+-++.+||. |+.+.+...
T Consensus       146 S~s~DnsViiwn~~tF~~~~vl~~H----~s~VKGvs~DP~-Gky~ASqsd  191 (942)
T KOG0973|consen  146 SVSLDNSVIIWNAKTFELLKVLRGH----QSLVKGVSWDPI-GKYFASQSD  191 (942)
T ss_pred             EecccceEEEEccccceeeeeeecc----cccccceEECCc-cCeeeeecC
Confidence            6444 44888988765322222222    245789999996 887776544

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=91.73  E-value=11  Score=35.10  Aligned_cols=93  Identities=15%  Similarity=0.188  Sum_probs=52.3

Q ss_pred             ccccccccCCCCC--CCceEEEc-CCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCC-e
Q 019290           23 SKSYQQLQLPGVV--GPESLAFD-CNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGR-P   98 (343)
Q Consensus        23 ~~~~~~~~~~~~~--~p~~l~~d-~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p   98 (343)
                      -+..+|..+|.-+  ...+|.+- .+.+.-|+.-..|.|++-+..+..|.........              ...... -
T Consensus        74 G~~W~q~~~p~~~~~~L~~V~F~~~d~~~GwAVG~~G~IL~T~DGG~tW~~~~~~~~~--------------~~~~~~~l  139 (398)
T PLN00033         74 SSEWEQVDLPIDPGVVLLDIAFVPDDPTHGFLLGTRQTLLETKDGGKTWVPRSIPSAE--------------DEDFNYRF  139 (398)
T ss_pred             CCccEEeecCCCCCCceEEEEeccCCCCEEEEEcCCCEEEEEcCCCCCceECccCccc--------------ccccccce
Confidence            3357777888433  45688883 2444467665688888877777778764211100              011111 2


Q ss_pred             eeEEEeCCCCeEEEEeCCCeEEEEeCCCC-eEEEc
Q 019290           99 LGIKFNPVTCDLYIADAYFGLMVVGPNGG-QAQQL  132 (343)
Q Consensus        99 ~gi~~~~~~~~l~v~~~~~gi~~~d~~~~-~~~~~  132 (343)
                      .++.+.  +++.|++ ...|+.....+.| .++.+
T Consensus       140 ~~v~f~--~~~g~~v-G~~G~il~T~DgG~tW~~~  171 (398)
T PLN00033        140 NSISFK--GKEGWII-GKPAILLHTSDGGETWERI  171 (398)
T ss_pred             eeeEEE--CCEEEEE-cCceEEEEEcCCCCCceEC
Confidence            567776  4668887 3567555555544 35544

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=91.70  E-value=9.9  Score=34.36  Aligned_cols=153  Identities=13%  Similarity=0.139  Sum_probs=81.7

Q ss_pred             eEEEeCCCCeEEEEeCCCeEEEEeCCCCeEEEcccccCCCCccCcce-eEEeCCCCeEEEEeCCcccccccceeeeeecC
Q 019290          100 GIKFNPVTCDLYIADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTND-LDIDPNTGIVYFTDSSIYFQRRQYFMSIATGD  178 (343)
Q Consensus       100 gi~~~~~~~~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~-i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~  178 (343)
                      .+.+.  .++|.|.- ...||.||.++-++  +......++  .+.+ .|..++.++-|++=.+              ..
T Consensus        92 ~VrmN--r~RLvV~L-ee~IyIydI~~Mkl--LhTI~t~~~--n~~gl~AlS~n~~n~ylAyp~--------------s~  150 (391)
T KOG2110|consen   92 AVRMN--RKRLVVCL-EESIYIYDIKDMKL--LHTIETTPP--NPKGLCALSPNNANCYLAYPG--------------ST  150 (391)
T ss_pred             EEEEc--cceEEEEE-cccEEEEeccccee--ehhhhccCC--CccceEeeccCCCCceEEecC--------------CC
Confidence            44455  46777763 44599999986443  321111111  1222 2344422333443222              12


Q ss_pred             CCceEEEEeCCCCce-EEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEE-EccCccccccceeeecCCCCCCceeeCC
Q 019290          179 RSGRLLKYDPLKKNV-TVMYNGLSFPNGVALSNNNSFLLLAESATLKILRF-WLQGERTTYTPQLFAEMPRFPDNIKSDS  256 (343)
Q Consensus       179 ~~~~v~~~d~~~~~~-~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~p~~i~~d~  256 (343)
                      ..|.|+.||..+-+. ..+..+-.....++|+++|. +..+.+..|+|.|. .+....++.+++.-. .+.....+++++
T Consensus       151 t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~-llATASeKGTVIRVf~v~~G~kl~eFRRG~-~~~~IySL~Fs~  228 (391)
T KOG2110|consen  151 TSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGT-LLATASEKGTVIRVFSVPEGQKLYEFRRGT-YPVSIYSLSFSP  228 (391)
T ss_pred             CCceEEEEEcccceeeeEEEecCCceeEEEECCCCC-EEEEeccCceEEEEEEcCCccEeeeeeCCc-eeeEEEEEEECC
Confidence            257799998764433 23344555678999999986 56666777777664 443221112221111 111234578899


Q ss_pred             CCCEEEEeccCCCcccccc
Q 019290          257 KGEFWIAMNSARGKIESNK  275 (343)
Q Consensus       257 ~G~lwi~~~~~~~~~~~~~  275 (343)
                      ++.+..++.+.+...+++.
T Consensus       229 ds~~L~~sS~TeTVHiFKL  247 (391)
T KOG2110|consen  229 DSQFLAASSNTETVHIFKL  247 (391)
T ss_pred             CCCeEEEecCCCeEEEEEe
Confidence            9998888776455444333

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=91.43  E-value=1.2  Score=26.33  Aligned_cols=39  Identities=28%  Similarity=0.328  Sum_probs=26.8

Q ss_pred             CeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEeecCCCCcceeEEe
Q 019290          154 GIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVALS  209 (343)
Q Consensus       154 g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~i~~~  209 (343)
                      +++|+++..                 .+.|..+|..+++...-..-...|.+++++
T Consensus         4 ~~lyv~~~~-----------------~~~v~~id~~~~~~~~~i~vg~~P~~i~~~   42 (42)
T TIGR02276         4 TKLYVTNSG-----------------SNTVSVIDTATNKVIATIPVGGYPFGVAVS   42 (42)
T ss_pred             CEEEEEeCC-----------------CCEEEEEECCCCeEEEEEECCCCCceEEeC
Confidence            579998865                 567889998777654434345667777653

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=91.40  E-value=12  Score=34.56  Aligned_cols=111  Identities=14%  Similarity=0.186  Sum_probs=60.5

Q ss_pred             CCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCCCeEEEEeC
Q 019290           45 NGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFGLMVVGP  124 (343)
Q Consensus        45 ~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~~gi~~~d~  124 (343)
                      +|+ +|++..++.++.+|..+++..=-....                 .. ....+-.+-. ++.+|+.+....++.+|.
T Consensus       111 ~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~-----------------~~-~~~~~~~v~~-~~~v~~~s~~g~~~al~~  170 (370)
T COG1520         111 DGK-IYVGSWDGKLYALDASTGTLVWSRNVG-----------------GS-PYYASPPVVG-DGTVYVGTDDGHLYALNA  170 (370)
T ss_pred             CCe-EEEecccceEEEEECCCCcEEEEEecC-----------------CC-eEEecCcEEc-CcEEEEecCCCeEEEEEc
Confidence            888 888888899999999655432111000                 00 0111212333 678888853456999999


Q ss_pred             CCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCce
Q 019290          125 NGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNV  193 (343)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~  193 (343)
                      ++|+.................... .. ++.+|++..+ .               .+.++.+|+.+|..
T Consensus       171 ~tG~~~W~~~~~~~~~~~~~~~~~-~~-~~~vy~~~~~-~---------------~~~~~a~~~~~G~~  221 (370)
T COG1520         171 DTGTLKWTYETPAPLSLSIYGSPA-IA-SGTVYVGSDG-Y---------------DGILYALNAEDGTL  221 (370)
T ss_pred             cCCcEEEEEecCCccccccccCce-ee-cceEEEecCC-C---------------cceEEEEEccCCcE
Confidence            988765542222111111122222 33 4788886542 0               12577777766654

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=91.38  E-value=9.6  Score=33.59  Aligned_cols=109  Identities=14%  Similarity=0.024  Sum_probs=73.9

Q ss_pred             eeeEEEeCCCCeEEEEeCCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeec
Q 019290           98 PLGIKFNPVTCDLYIADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATG  177 (343)
Q Consensus        98 p~gi~~~~~~~~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~  177 (343)
                      +..+.+++..+.|+++.+...+..|+..+...+...  ..+   ..+.+.++.+ +..+|.++.                
T Consensus        16 IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~--~~~---~plL~c~F~d-~~~~~~G~~----------------   73 (323)
T KOG1036|consen   16 ISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF--KHG---APLLDCAFAD-ESTIVTGGL----------------   73 (323)
T ss_pred             eeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe--ecC---CceeeeeccC-CceEEEecc----------------
Confidence            456778887788999976555888887654322211  111   2245666666 478888654                


Q ss_pred             CCCceEEEEeCCCCceEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEcc
Q 019290          178 DRSGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQ  231 (343)
Q Consensus       178 ~~~~~v~~~d~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~  231 (343)
                        .+.|-++|..++....+..+......+...+-. ...++..-+++|-.||..
T Consensus        74 --dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~-~~vIsgsWD~~ik~wD~R  124 (323)
T KOG1036|consen   74 --DGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEV-GCVISGSWDKTIKFWDPR  124 (323)
T ss_pred             --CceEEEEEecCCcceeeccCCCceEEEEeeccC-CeEEEcccCccEEEEecc
Confidence              467999999888777666666666777776433 367787788999999864

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=91.28  E-value=5.6  Score=38.61  Aligned_cols=161  Identities=16%  Similarity=0.177  Sum_probs=92.0

Q ss_pred             CceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCC
Q 019290           37 PESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAY  116 (343)
Q Consensus        37 p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~  116 (343)
                      ..+++.-.+|+.+.....+-.|..|+...+.  .+..               ..+......+..+++...++.+.++..-
T Consensus        76 VNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~--~~c~---------------stir~H~DYVkcla~~ak~~~lvaSgGL  138 (735)
T KOG0308|consen   76 VNDIILCGNGKTLISASSDTTVKVWNAHKDN--TFCM---------------STIRTHKDYVKCLAYIAKNNELVASGGL  138 (735)
T ss_pred             HhhHHhhcCCCceEEecCCceEEEeecccCc--chhH---------------hhhhcccchheeeeecccCceeEEecCC
Confidence            3455666677656666777778888775432  1100               0001112245566674424455544222


Q ss_pred             -CeEEEEeCCCCeEEEcccc-------cCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeC
Q 019290          117 -FGLMVVGPNGGQAQQLASS-------AGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDP  188 (343)
Q Consensus       117 -~gi~~~d~~~~~~~~~~~~-------~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~  188 (343)
                       ..|+.+|.+++..+.+...       ....+...+++++..+. |.++++..-                 .+-|..||+
T Consensus       139 D~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t-~t~ivsGgt-----------------ek~lr~wDp  200 (735)
T KOG0308|consen  139 DRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQT-GTIIVSGGT-----------------EKDLRLWDP  200 (735)
T ss_pred             CccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCc-ceEEEecCc-----------------ccceEEecc
Confidence             3499999987743222111       11122345777887774 777774432                 345777898


Q ss_pred             CCCceE-EeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCc
Q 019290          189 LKKNVT-VMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGE  233 (343)
Q Consensus       189 ~~~~~~-~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~  233 (343)
                      .+++.. .+...-.....+.++.||..+. +.+.++.|..|++..+
T Consensus       201 rt~~kimkLrGHTdNVr~ll~~dDGt~~l-s~sSDgtIrlWdLgqQ  245 (735)
T KOG0308|consen  201 RTCKKIMKLRGHTDNVRVLLVNDDGTRLL-SASSDGTIRLWDLGQQ  245 (735)
T ss_pred             ccccceeeeeccccceEEEEEcCCCCeEe-ecCCCceEEeeecccc
Confidence            766533 3343334567788888888765 4456899999998653

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=91.26  E-value=1.2  Score=31.52  Aligned_cols=33  Identities=21%  Similarity=0.196  Sum_probs=24.6

Q ss_pred             CCcCCeeeEEEeCCCCeEEEEeCCCe-EEEEeCC
Q 019290           93 PLCGRPLGIKFNPVTCDLYIADAYFG-LMVVGPN  125 (343)
Q Consensus        93 ~~~~~p~gi~~~~~~~~l~v~~~~~g-i~~~d~~  125 (343)
                      .....|+||.++++++.|||++...+ |+.+..+
T Consensus        51 ~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~   84 (86)
T PF01731_consen   51 SGFSFANGIAISPDKKYLYVASSLAHSIHVYKRH   84 (86)
T ss_pred             ccCCCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence            34456899999997789999976544 7777654

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=91.25  E-value=5.5  Score=36.10  Aligned_cols=159  Identities=11%  Similarity=0.091  Sum_probs=86.5

Q ss_pred             CceEEEcC--CCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEe
Q 019290           37 PESLAFDC--NGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIAD  114 (343)
Q Consensus        37 p~~l~~d~--~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~  114 (343)
                      -.+|+++|  .|. +-++....+|+.+.+.++.|..=..+.                ......+.+++.++...+++.+.
T Consensus       214 Gy~LdWSp~~~g~-LlsGDc~~~I~lw~~~~g~W~vd~~Pf----------------~gH~~SVEDLqWSptE~~vfaSc  276 (440)
T KOG0302|consen  214 GYGLDWSPIKTGR-LLSGDCVKGIHLWEPSTGSWKVDQRPF----------------TGHTKSVEDLQWSPTEDGVFASC  276 (440)
T ss_pred             ceeeecccccccc-cccCccccceEeeeeccCceeecCccc----------------cccccchhhhccCCccCceEEee
Confidence            34666666  355 555556667888888887776422110                01111245677777556666664


Q ss_pred             CCCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCce
Q 019290          115 AYFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNV  193 (343)
Q Consensus       115 ~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~  193 (343)
                      ...| |..+|.+.++-+.....  .+...-+|-|....+ -.+.++...                 .|.+-.+|...-+.
T Consensus       277 S~DgsIrIWDiRs~~~~~~~~~--kAh~sDVNVISWnr~-~~lLasG~D-----------------dGt~~iwDLR~~~~  336 (440)
T KOG0302|consen  277 SCDGSIRIWDIRSGPKKAAVST--KAHNSDVNVISWNRR-EPLLASGGD-----------------DGTLSIWDLRQFKS  336 (440)
T ss_pred             ecCceEEEEEecCCCccceeEe--eccCCceeeEEccCC-cceeeecCC-----------------CceEEEEEhhhccC
Confidence            4555 88889887643222111  111123555555442 223332211                 34454555532222


Q ss_pred             E----EeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290          194 T----VMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQG  232 (343)
Q Consensus       194 ~----~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~  232 (343)
                      .    .+.........+.++|.....+.+....++|..||+.-
T Consensus       337 ~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv  379 (440)
T KOG0302|consen  337 GQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV  379 (440)
T ss_pred             CCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence            1    22223345678889887777777777789999999863

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=91.21  E-value=15  Score=35.65  Aligned_cols=73  Identities=10%  Similarity=0.041  Sum_probs=39.4

Q ss_pred             CCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCCC-eEEEEe
Q 019290           45 NGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYF-GLMVVG  123 (343)
Q Consensus        45 ~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~~-gi~~~d  123 (343)
                      ..++||++.++|.|-.||.....+.   .....    +      +.+....+....+...+ +...+|...++ .+..+|
T Consensus        63 ~eHiLavadE~G~i~l~dt~~~~fr---~ee~~----l------k~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wd  128 (720)
T KOG0321|consen   63 KEHILAVADEDGGIILFDTKSIVFR---LEERQ----L------KKPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWD  128 (720)
T ss_pred             ccceEEEecCCCceeeecchhhhcc---hhhhh----h------cccccccceeEeeccCC-CceeEEEccCCceeeeee
Confidence            3557788888998988876543322   00000    0      01112223344555555 55566654443 388888


Q ss_pred             CCCCeEEE
Q 019290          124 PNGGQAQQ  131 (343)
Q Consensus       124 ~~~~~~~~  131 (343)
                      .++.+...
T Consensus       129 vk~s~l~G  136 (720)
T KOG0321|consen  129 VKTSRLVG  136 (720)
T ss_pred             eccceeec
Confidence            88776544

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=91.17  E-value=14  Score=35.19  Aligned_cols=157  Identities=14%  Similarity=0.041  Sum_probs=92.5

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      ..-++.+.+|++.+-.+.+++.++.||....+.....                   ....+.+..++++|-...|+....
T Consensus       303 eVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~-------------------~~H~aAVKA~awcP~q~~lLAsGG  363 (484)
T KOG0305|consen  303 EVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTF-------------------TEHTAAVKALAWCPWQSGLLATGG  363 (484)
T ss_pred             eeeeeEECCCCCeeccCCCccceEeccCCCccccEEE-------------------eccceeeeEeeeCCCccCceEEcC
Confidence            3568899999996667788899999998543322211                   122334667888885556655433


Q ss_pred             C--C-eEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCc
Q 019290          116 Y--F-GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKN  192 (343)
Q Consensus       116 ~--~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~  192 (343)
                      +  + .|..+|..+++.......     ...+-.|+..+..+.+..+-...              ...-.||+|-. -..
T Consensus       364 Gs~D~~i~fwn~~~g~~i~~vdt-----gsQVcsL~Wsk~~kEi~sthG~s--------------~n~i~lw~~ps-~~~  423 (484)
T KOG0305|consen  364 GSADRCIKFWNTNTGARIDSVDT-----GSQVCSLIWSKKYKELLSTHGYS--------------ENQITLWKYPS-MKL  423 (484)
T ss_pred             CCcccEEEEEEcCCCcEeccccc-----CCceeeEEEcCCCCEEEEecCCC--------------CCcEEEEeccc-cce
Confidence            3  2 377788887754332221     14577788887534555433221              11224666632 123


Q ss_pred             eEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290          193 VTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQG  232 (343)
Q Consensus       193 ~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~  232 (343)
                      +..+..+....-.++++|||..+..+ ..+..|..|++-+
T Consensus       424 ~~~l~gH~~RVl~la~SPdg~~i~t~-a~DETlrfw~~f~  462 (484)
T KOG0305|consen  424 VAELLGHTSRVLYLALSPDGETIVTG-AADETLRFWNLFD  462 (484)
T ss_pred             eeeecCCcceeEEEEECCCCCEEEEe-cccCcEEeccccC
Confidence            33334444556778899999866544 4577888877654

>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]

Probab=91.07  E-value=17  Score=37.94  Aligned_cols=188  Identities=19%  Similarity=0.248  Sum_probs=108.1

Q ss_pred             ccCCCCCCCceEEEcCCCC-eeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCC
Q 019290           29 LQLPGVVGPESLAFDCNGE-GPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVT  107 (343)
Q Consensus        29 ~~~~~~~~p~~l~~d~~g~-~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~  107 (343)
                      +++++...+..+.++...+ ++|.......+++..........+.                   ....-.+.+++.|.-.
T Consensus       431 ~p~~~~~~~~~~d~d~~~~~i~~~d~~~~~i~~~~~~~~~~~~~~-------------------~~g~~~~~~lavD~~~  491 (877)
T KOG1215|consen  431 RPLEGIKNAVALDFDVLNNRIYWADLSDEKICRASQDGSSECELC-------------------GDGLCIPEGLAVDWIG  491 (877)
T ss_pred             EEccCCccceEEEEEecCCEEEEEeccCCeEeeeccCCCccceEe-------------------ccCccccCcEEEEecc
Confidence            3344434455555655433 4556666777777655443222211                   1222346789999878


Q ss_pred             CeEEEEeCCCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEE
Q 019290          108 CDLYIADAYFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKY  186 (343)
Q Consensus       108 ~~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~  186 (343)
                      +++|.++.... +...+.+......+....    ...+..+++++..+.+++++.+.                ..++.|-
T Consensus       492 ~~~y~tDe~~~~i~v~~~~g~~~~vl~~~~----l~~~r~~~v~p~~g~~~wtd~~~----------------~~~i~ra  551 (877)
T KOG1215|consen  492 DNIYWTDEGNCLIEVADLDGSSRKVLVSKD----LDLPRSIAVDPEKGLMFWTDWGQ----------------PPRIERA  551 (877)
T ss_pred             CCceecccCCceeEEEEccCCceeEEEecC----CCCccceeeccccCeeEEecCCC----------------Cchhhhh
Confidence            89999987654 555554433212222111    13477899999778899988652                1145554


Q ss_pred             eCCCCceEEeec-CCCCcceeEEecCCCEEEEEEcCCC-eEEEEEccCccccccceeeecCCCCCCceeeCCCC
Q 019290          187 DPLKKNVTVMYN-GLSFPNGVALSNNNSFLLLAESATL-KILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKG  258 (343)
Q Consensus       187 d~~~~~~~~~~~-~~~~~~~i~~~~d~~~lyv~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G  258 (343)
                      ..+......+.. +...+++++++--.+.+|+.+.... .+...+.++... .  .........|.++.+-.+.
T Consensus       552 ~~dg~~~~~l~~~~~~~p~glt~d~~~~~~yw~d~~~~~~i~~~~~~g~~r-~--~~~~~~~~~p~~~~~~~~~  622 (877)
T KOG1215|consen  552 SLDGSERAVLVTNGILWPNGLTIDYETDRLYWADAKLDYTIESANMDGQNR-R--VVDSEDLPHPFGLSVFEDY  622 (877)
T ss_pred             cCCCCCceEEEeCCccCCCcceEEeecceeEEEcccCCcceeeeecCCCce-E--EeccccCCCceEEEEecce
Confidence            444333333333 3577999999877788999988777 688888776332 1  1111223356666654433

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=90.92  E-value=9  Score=36.78  Aligned_cols=80  Identities=16%  Similarity=0.162  Sum_probs=43.3

Q ss_pred             eeEEEeCCCCe-EEEEeC-------------CCeEEEEeCCCCeEEEcccc---c----C--------------CCC--c
Q 019290           99 LGIKFNPVTCD-LYIADA-------------YFGLMVVGPNGGQAQQLASS---A----G--------------GIP--F  141 (343)
Q Consensus        99 ~gi~~~~~~~~-l~v~~~-------------~~gi~~~d~~~~~~~~~~~~---~----~--------------~~~--~  141 (343)
                      |.+...+ +|+ |+.+..             .+.|..+| .+|++......   .    .              ...  =
T Consensus       193 HD~~~l~-nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW  270 (477)
T PF05935_consen  193 HDIDELP-NGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDW  270 (477)
T ss_dssp             S-EEE-T-TS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS
T ss_pred             cccEECC-CCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCc
Confidence            5677777 544 444431             35689999 77877654221   0    0              000  1


Q ss_pred             cCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEee
Q 019290          142 RFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMY  197 (343)
Q Consensus       142 ~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~  197 (343)
                      .++|++..++.++.|.++-..                 ...|+.+|..++++.-+.
T Consensus       271 ~H~Nsi~yd~~dd~iivSsR~-----------------~s~V~~Id~~t~~i~Wil  309 (477)
T PF05935_consen  271 LHINSIDYDPSDDSIIVSSRH-----------------QSAVIKIDYRTGKIKWIL  309 (477)
T ss_dssp             --EEEEEEETTTTEEEEEETT-----------------T-EEEEEE-TTS-EEEEE
T ss_pred             cccCccEEeCCCCeEEEEcCc-----------------ceEEEEEECCCCcEEEEe
Confidence            457899999866889997765                 446888887777776544

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=90.64  E-value=11  Score=33.17  Aligned_cols=75  Identities=9%  Similarity=0.059  Sum_probs=51.4

Q ss_pred             EEEEeCCCeEEEEeCCCCeEEEcccccCCCCc---cCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEE
Q 019290          110 LYIADAYFGLMVVGPNGGQAQQLASSAGGIPF---RFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKY  186 (343)
Q Consensus       110 l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~---~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~  186 (343)
                      +-+.+....|..+|.++++++.+....-..+.   .-+.+|..||.+++|+++-..              +...-+||.+
T Consensus        71 IdF~NKYSHVH~yd~e~~~VrLLWkesih~~~~WaGEVSdIlYdP~~D~LLlAR~D--------------Gh~nLGvy~l  136 (339)
T PF09910_consen   71 IDFRNKYSHVHEYDTENDSVRLLWKESIHDKTKWAGEVSDILYDPYEDRLLLARAD--------------GHANLGVYSL  136 (339)
T ss_pred             EEEeeccceEEEEEcCCCeEEEEEecccCCccccccchhheeeCCCcCEEEEEecC--------------CcceeeeEEE
Confidence            33333446788999998988877544322222   336788999977889987543              3335679999


Q ss_pred             eCCCCceEEeec
Q 019290          187 DPLKKNVTVMYN  198 (343)
Q Consensus       187 d~~~~~~~~~~~  198 (343)
                      |..+++.+.+..
T Consensus       137 dr~~g~~~~L~~  148 (339)
T PF09910_consen  137 DRRTGKAEKLSS  148 (339)
T ss_pred             cccCCceeeccC
Confidence            999998887654

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=90.61  E-value=12  Score=33.15  Aligned_cols=146  Identities=21%  Similarity=0.180  Sum_probs=74.0

Q ss_pred             CeeeEEEeCCCCeEEEEeCCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeee
Q 019290           97 RPLGIKFNPVTCDLYIADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIAT  176 (343)
Q Consensus        97 ~p~gi~~~~~~~~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~  176 (343)
                      ...+..+.  ++..||++...|+..+|..+-+--.+...... +..-.+++++..  ++.|++...              
T Consensus       130 yaygv~vs--Gn~aYVadlddgfLivdvsdpssP~lagrya~-~~~d~~~v~ISG--n~AYvA~~d--------------  190 (370)
T COG5276         130 YAYGVYVS--GNYAYVADLDDGFLIVDVSDPSSPQLAGRYAL-PGGDTHDVAISG--NYAYVAWRD--------------  190 (370)
T ss_pred             eEEEEEec--CCEEEEeeccCcEEEEECCCCCCceeeeeecc-CCCCceeEEEec--CeEEEEEeC--------------
Confidence            34455555  78999999889999998765332222211111 112236788887  588887653              


Q ss_pred             cCCCceEEEEeCCCCceEEee---cCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeec-CCCCCCce
Q 019290          177 GDRSGRLLKYDPLKKNVTVMY---NGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAE-MPRFPDNI  252 (343)
Q Consensus       177 ~~~~~~v~~~d~~~~~~~~~~---~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~p~~i  252 (343)
                          +++..+|.....--.+.   .......+.-++  +++.|++.- +..+...+.+++..   ..++-. ...-|.++
T Consensus       191 ----~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vs--dnr~y~vvy-~egvlivd~s~~ss---p~~~gsyet~~p~~~  260 (370)
T COG5276         191 ----GGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVS--DNRAYLVVY-DEGVLIVDVSGPSS---PTVFGSYETSNPVSI  260 (370)
T ss_pred             ----CCeEEEEccCCCCCeEEEEEecCCceEEEEec--CCeeEEEEc-ccceEEEecCCCCC---ceEeeccccCCcccc
Confidence                34666654322111111   111123334343  334566654 44577777665432   122211 11124443


Q ss_pred             --eeCCCCCEEEEeccCCCcc
Q 019290          253 --KSDSKGEFWIAMNSARGKI  271 (343)
Q Consensus       253 --~~d~~G~lwi~~~~~~~~~  271 (343)
                        ..=++...|++...++.++
T Consensus       261 s~v~Vs~~~~Yvadga~gl~~  281 (370)
T COG5276         261 STVPVSGEYAYVADGAKGLPI  281 (370)
T ss_pred             cceecccceeeeeccccCcee
Confidence              2223556788887655443

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=90.58  E-value=16  Score=34.81  Aligned_cols=60  Identities=10%  Similarity=0.033  Sum_probs=38.5

Q ss_pred             CcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEec
Q 019290          202 FPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMN  265 (343)
Q Consensus       202 ~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~  265 (343)
                      .++..+|++||++|-+.. .++.|.+|+.+....+..++.+  ..+ --.++.++||++.+...
T Consensus       292 ~in~f~FS~DG~~LA~VS-qDGfLRvF~fdt~eLlg~mkSY--FGG-LLCvcWSPDGKyIvtGG  351 (636)
T KOG2394|consen  292 SINEFAFSPDGKYLATVS-QDGFLRIFDFDTQELLGVMKSY--FGG-LLCVCWSPDGKYIVTGG  351 (636)
T ss_pred             cccceeEcCCCceEEEEe-cCceEEEeeccHHHHHHHHHhh--ccc-eEEEEEcCCccEEEecC
Confidence            679999999999887664 5789999998764332222222  111 11245688997666543

>PLN02153 epithiospecifier protein

Probab=90.45  E-value=13  Score=33.68  Aligned_cols=83  Identities=14%  Similarity=0.047  Sum_probs=44.2

Q ss_pred             eeEEEeCCCCeEEEEeCC--------CeEEEEeCCCCeEEEcccccCCCCccC-cceeEEeCCCCeEEEEeCCccccccc
Q 019290           99 LGIKFNPVTCDLYIADAY--------FGLMVVGPNGGQAQQLASSAGGIPFRF-TNDLDIDPNTGIVYFTDSSIYFQRRQ  169 (343)
Q Consensus        99 ~gi~~~~~~~~l~v~~~~--------~gi~~~d~~~~~~~~~~~~~~~~~~~~-~~~i~~d~~dg~l~v~~~~~~~~~~~  169 (343)
                      ++++..  ++.|||....        +.+++||+.+.+++.+........... -..++.-  ++.||+--...      
T Consensus        26 h~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~------   95 (341)
T PLN02153         26 HGIAVV--GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV--GTKLYIFGGRD------   95 (341)
T ss_pred             ceEEEE--CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE--CCEEEEECCCC------
Confidence            345554  4678875221        248899999888876543221111111 1223333  36888742210      


Q ss_pred             ceeeeeecCCCceEEEEeCCCCceEEee
Q 019290          170 YFMSIATGDRSGRLLKYDPLKKNVTVMY  197 (343)
Q Consensus       170 ~~~~~~~~~~~~~v~~~d~~~~~~~~~~  197 (343)
                            .......+++||+.+.+.+.+.
T Consensus        96 ------~~~~~~~v~~yd~~t~~W~~~~  117 (341)
T PLN02153         96 ------EKREFSDFYSYDTVKNEWTFLT  117 (341)
T ss_pred             ------CCCccCcEEEEECCCCEEEEec
Confidence                  0011246899999888776543

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=90.33  E-value=6.3  Score=39.04  Aligned_cols=148  Identities=16%  Similarity=0.149  Sum_probs=80.6

Q ss_pred             eeEEEeCCCCeEEEEe-CCCeEEEEeCCCCeEEEccccc-CCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeee
Q 019290           99 LGIKFNPVTCDLYIAD-AYFGLMVVGPNGGQAQQLASSA-GGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIAT  176 (343)
Q Consensus        99 ~gi~~~~~~~~l~v~~-~~~gi~~~d~~~~~~~~~~~~~-~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~  176 (343)
                      +.|...++-..|.++. ...+|+.+++............ ....+..+++++....+.++.++...              
T Consensus        43 nAIs~nr~~~qiv~AGrs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~--------------  108 (839)
T KOG0269|consen   43 NAISVNRDINQIVVAGRSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCST--------------  108 (839)
T ss_pred             ceEeecCCcceeEEecccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecC--------------
Confidence            3455555334555552 2245788877643322211111 11123345566655433344444433              


Q ss_pred             cCCCceEEEEeCCCC--c--eEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCce
Q 019290          177 GDRSGRLLKYDPLKK--N--VTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNI  252 (343)
Q Consensus       177 ~~~~~~v~~~d~~~~--~--~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i  252 (343)
                         .|.|..||....  +  ...+...-+..+.++|+.-...+.++.+.++.|-.||+.....   ...+-...-..+.+
T Consensus       109 ---nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S---~~t~~~nSESiRDV  182 (839)
T KOG0269|consen  109 ---NGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS---KSTFRSNSESIRDV  182 (839)
T ss_pred             ---CCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc---cccccccchhhhce
Confidence               567888887521  1  1122234456788999988888999999999999999875422   11221111124445


Q ss_pred             eeCC-CCCEEEEecc
Q 019290          253 KSDS-KGEFWIAMNS  266 (343)
Q Consensus       253 ~~d~-~G~lwi~~~~  266 (343)
                      .+.+ .++.+.+...
T Consensus       183 ~fsp~~~~~F~s~~d  197 (839)
T KOG0269|consen  183 KFSPGYGNKFASIHD  197 (839)
T ss_pred             eeccCCCceEEEecC
Confidence            5554 4677777776

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=90.31  E-value=13  Score=37.23  Aligned_cols=100  Identities=23%  Similarity=0.205  Sum_probs=61.6

Q ss_pred             ceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCCC
Q 019290           38 ESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYF  117 (343)
Q Consensus        38 ~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~~  117 (343)
                      .+.+..+.++.+-++..+|+|..+..-+.+-....               ...+.+.-....++++..++..||-|. ..
T Consensus       209 t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t---------------~t~lHWH~~~V~~L~fS~~G~~LlSGG-~E  272 (792)
T KOG1963|consen  209 TCVALSPNERYLAAGDSDGRILVWRDFGSSDDSET---------------CTLLHWHHDEVNSLSFSSDGAYLLSGG-RE  272 (792)
T ss_pred             eeEEeccccceEEEeccCCcEEEEecccccccccc---------------ceEEEecccccceeEEecCCceEeecc-cc
Confidence            56778888996667788899888864331100000               011123334567899998566777763 34


Q ss_pred             e-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEE
Q 019290          118 G-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFT  159 (343)
Q Consensus       118 g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~  159 (343)
                      | +.++..+|++.+-+ +...    ..+.++++.+ |+.+|..
T Consensus       273 ~VLv~Wq~~T~~kqfL-PRLg----s~I~~i~vS~-ds~~~sl  309 (792)
T KOG1963|consen  273 GVLVLWQLETGKKQFL-PRLG----SPILHIVVSP-DSDLYSL  309 (792)
T ss_pred             eEEEEEeecCCCcccc-cccC----CeeEEEEEcC-CCCeEEE
Confidence            5 67888888874433 3222    3467888888 6887764

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=90.28  E-value=13  Score=33.15  Aligned_cols=160  Identities=14%  Similarity=0.121  Sum_probs=79.6

Q ss_pred             CceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEe-C
Q 019290           37 PESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIAD-A  115 (343)
Q Consensus        37 p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~-~  115 (343)
                      ..++++.+||..+-+...++.|..|+...-+.+++.          |     -+..-+...|.-+.|.++-..+.|+. .
T Consensus        89 vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr----------~-----~R~nve~dhpT~V~FapDc~s~vv~~~~  153 (420)
T KOG2096|consen   89 VTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHR----------C-----IRQNVEYDHPTRVVFAPDCKSVVVSVKR  153 (420)
T ss_pred             eeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhh----------H-----hhccccCCCceEEEECCCcceEEEEEcc
Confidence            669999999996666667777777766441111110          0     00001223577788888445554442 2


Q ss_pred             CCeEEEE--eCCC-CeEE-Eccccc----CCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEe
Q 019290          116 YFGLMVV--GPNG-GQAQ-QLASSA----GGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYD  187 (343)
Q Consensus       116 ~~gi~~~--d~~~-~~~~-~~~~~~----~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d  187 (343)
                      ++.++.|  +.++ |... ......    +.....-+.++-+..  +..|+..-+                ....|..|+
T Consensus       154 g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~--~~k~imsas----------------~dt~i~lw~  215 (420)
T KOG2096|consen  154 GNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAG--NAKYIMSAS----------------LDTKICLWD  215 (420)
T ss_pred             CCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecC--CceEEEEec----------------CCCcEEEEe
Confidence            3445555  3322 2111 110000    000001111122222  344442211                145688888


Q ss_pred             CCCCceEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEc
Q 019290          188 PLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWL  230 (343)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~  230 (343)
                      ..+..+..+...-......+++|+|+.+.++... --+.+|.+
T Consensus       216 lkGq~L~~idtnq~~n~~aavSP~GRFia~~gFT-pDVkVwE~  257 (420)
T KOG2096|consen  216 LKGQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFT-PDVKVWEP  257 (420)
T ss_pred             cCCceeeeeccccccccceeeCCCCcEEEEecCC-CCceEEEE
Confidence            8744444444444445667889999988777653 44666654

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=90.21  E-value=5  Score=38.88  Aligned_cols=150  Identities=16%  Similarity=0.170  Sum_probs=77.1

Q ss_pred             CceEEEcC-CCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCC-CeEEEEe
Q 019290           37 PESLAFDC-NGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVT-CDLYIAD  114 (343)
Q Consensus        37 p~~l~~d~-~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~-~~l~v~~  114 (343)
                      .-++.+|+ |...|-++..+|+|..|....+...+..+.+.            ..+....-.+..+-+++-- +-|.++.
T Consensus       630 vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe------------~~lt~h~eKI~slRfHPLAadvLa~as  697 (1012)
T KOG1445|consen  630 VTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPE------------KILTIHGEKITSLRFHPLAADVLAVAS  697 (1012)
T ss_pred             eeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcc------------eeeecccceEEEEEecchhhhHhhhhh
Confidence            34566676 44457777788877666544322221111000            0000111224455555421 2334443


Q ss_pred             CCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceE
Q 019290          115 AYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVT  194 (343)
Q Consensus       115 ~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~  194 (343)
                      ...-|..+|+.+++...-.....    ..+.+++..+ ||+...+.-.                 .++|..|++.+++..
T Consensus       698 yd~Ti~lWDl~~~~~~~~l~gHt----dqIf~~AWSp-dGr~~AtVcK-----------------Dg~~rVy~Prs~e~p  755 (1012)
T KOG1445|consen  698 YDSTIELWDLANAKLYSRLVGHT----DQIFGIAWSP-DGRRIATVCK-----------------DGTLRVYEPRSREQP  755 (1012)
T ss_pred             ccceeeeeehhhhhhhheeccCc----CceeEEEECC-CCcceeeeec-----------------CceEEEeCCCCCCCc
Confidence            33457888887765432222222    4588999999 6998775533                 578999998766543


Q ss_pred             EeecC-CC--CcceeEEecCCCEEEEEEc
Q 019290          195 VMYNG-LS--FPNGVALSNNNSFLLLAES  220 (343)
Q Consensus       195 ~~~~~-~~--~~~~i~~~~d~~~lyv~~~  220 (343)
                      ..... ..  ...-|.+.-||+.+.++..
T Consensus       756 v~Eg~gpvgtRgARi~wacdgr~viv~Gf  784 (1012)
T KOG1445|consen  756 VYEGKGPVGTRGARILWACDGRIVIVVGF  784 (1012)
T ss_pred             cccCCCCccCcceeEEEEecCcEEEEecc
Confidence            32211 11  1223444456776666654

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=90.09  E-value=13  Score=33.09  Aligned_cols=171  Identities=13%  Similarity=0.104  Sum_probs=83.7

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCC-------eEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCC
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSG-------WTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTC  108 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~  108 (343)
                      .-.+..+.|||..+.+.+.+..+..|+.....       ...+...+...   -..|   .+...-...++ |..+..+-
T Consensus        51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r---~~eg---~tvydy~wYs~-M~s~qP~t  123 (406)
T KOG2919|consen   51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYR---YQEG---ETVYDYCWYSR-MKSDQPST  123 (406)
T ss_pred             hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEE---eccC---CEEEEEEeeec-cccCCCcc
Confidence            45678899999988888888878777643210       00000000000   0000   00000011111 11122244


Q ss_pred             eEEEEeCCCe-EEEEeCCCCeEEEcccccC-CCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEE
Q 019290          109 DLYIADAYFG-LMVVGPNGGQAQQLASSAG-GIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKY  186 (343)
Q Consensus       109 ~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~-~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~  186 (343)
                      .+|.++.... |..+|.-+|+.+.-..... .......+++.+.+ ||.-.++..                  ...|-.|
T Consensus       124 ~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~-DGeqlfaGy------------------krcirvF  184 (406)
T KOG2919|consen  124 NLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSP-DGEQLFAGY------------------KRCIRVF  184 (406)
T ss_pred             ceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecC-CCCeEeecc------------------cceEEEe
Confidence            5666644433 8888888887765432211 12234567899999 576444322                  2245556


Q ss_pred             eC-CCCceE----EeecC----CCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290          187 DP-LKKNVT----VMYNG----LSFPNGVALSNNNSFLLLAESATLKILRFWLQG  232 (343)
Q Consensus       187 d~-~~~~~~----~~~~~----~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~  232 (343)
                      |. ..|...    ++..+    ......++++|-...++...+..+++-.|.-++
T Consensus       185 dt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~  239 (406)
T KOG2919|consen  185 DTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG  239 (406)
T ss_pred             eccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCC
Confidence            65 223221    11111    112355677776665666666666666665444

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=89.78  E-value=5  Score=34.64  Aligned_cols=70  Identities=24%  Similarity=0.179  Sum_probs=45.9

Q ss_pred             cCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceE-EeecCCCCcceeEEecCCCEEEEEEc
Q 019290          142 RFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVT-VMYNGLSFPNGVALSNNNSFLLLAES  220 (343)
Q Consensus       142 ~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~~~~~~i~~~~d~~~lyv~~~  220 (343)
                      ..++++.+.+ |+.+..+..-                 .+++..|+-.+...- .+.......+.++|+++-+ +..+.+
T Consensus       252 pGv~gvrIRp-D~KIlATAGW-----------------D~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~-lmAaas  312 (323)
T KOG0322|consen  252 PGVSGVRIRP-DGKILATAGW-----------------DHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCE-LMAAAS  312 (323)
T ss_pred             CCccceEEcc-CCcEEeeccc-----------------CCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCc-hhhhcc
Confidence            4578899999 6998886542                 344444444444432 2333446789999999854 666667


Q ss_pred             CCCeEEEEEc
Q 019290          221 ATLKILRFWL  230 (343)
Q Consensus       221 ~~~~i~~~~~  230 (343)
                      .+.+|..|++
T Consensus       313 kD~rISLWkL  322 (323)
T KOG0322|consen  313 KDARISLWKL  322 (323)
T ss_pred             CCceEEeeec
Confidence            7888877764

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.43  E-value=22  Score=34.65  Aligned_cols=101  Identities=11%  Similarity=0.106  Sum_probs=59.5

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      ...++.+-|..-.+.++-.+|.+..|+.+++.+..-....                 ..  ......+-.+++.+.++..
T Consensus        15 RVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~-----------------~~--PvRa~kfiaRknWiv~GsD   75 (794)
T KOG0276|consen   15 RVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVS-----------------EV--PVRAAKFIARKNWIVTGSD   75 (794)
T ss_pred             ceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeec-----------------cc--chhhheeeeccceEEEecC
Confidence            4667888888885557778999999998876443211000                 00  1122233333677777754


Q ss_pred             CCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEe
Q 019290          116 YFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTD  160 (343)
Q Consensus       116 ~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~  160 (343)
                      ...|..|+..|+.-......    ....+..++++|. .-..++.
T Consensus        76 D~~IrVfnynt~ekV~~FeA----H~DyIR~iavHPt-~P~vLts  115 (794)
T KOG0276|consen   76 DMQIRVFNYNTGEKVKTFEA----HSDYIRSIAVHPT-LPYVLTS  115 (794)
T ss_pred             CceEEEEecccceeeEEeec----cccceeeeeecCC-CCeEEec
Confidence            45588888877643222221    1246889999995 5544443

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=89.34  E-value=19  Score=33.76  Aligned_cols=225  Identities=11%  Similarity=0.145  Sum_probs=88.5

Q ss_pred             ccccccccCCCC-CCCceEEEc-----------CCCCeeEEE-ecCCEEEEEEcCCC----CeEEeeecCCCccccccCC
Q 019290           23 SKSYQQLQLPGV-VGPESLAFD-----------CNGEGPYVG-VSDGRILKWKAANS----GWTEFATTAPHRAREICDG   85 (343)
Q Consensus        23 ~~~~~~~~~~~~-~~p~~l~~d-----------~~g~~l~~~-~~~g~i~~~d~~~~----~~~~~~~~~~~~~~~~~~~   85 (343)
                      .+.+.++++|.. ..++..=+.           .+-+.|++. -..++||.+|..+.    ++.++.....     +.  
T Consensus        52 gqVIhrl~mp~~GDElHH~GWNaCSsc~~~~~~~~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~e-----v~--  124 (461)
T PF05694_consen   52 GQVIHRLPMPNRGDELHHSGWNACSSCHYGDPSKERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEE-----VF--  124 (461)
T ss_dssp             TSEEEEEE-SSS---B---EES--GGSTT--TT--S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHH-----HH--
T ss_pred             ccEEEEEeCCCCCCccccccCcccccccCCCCcccCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHH-----HH--
Confidence            466677778732 233333222           133445543 47789999987542    1211110000     00  


Q ss_pred             CCCcccCCCcCCeeeEEEeCCCCeEEEEeC-------CCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEE
Q 019290           86 STNTTLEPLCGRPLGIKFNPVTCDLYIADA-------YFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYF  158 (343)
Q Consensus        86 ~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~-------~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v  158 (343)
                           .......|+..---+ +|+++|+..       ..|+..+|-+|-++......... ...+-.++...+. .++-+
T Consensus       125 -----~k~g~s~PHT~Hclp-~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~-~~~~gYDfw~qpr-~nvMi  196 (461)
T PF05694_consen  125 -----EKTGLSRPHTVHCLP-DGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRG-PQPFGYDFWYQPR-HNVMI  196 (461)
T ss_dssp             -----HHH-EEEEEEEEE-S-S--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-T-T------EEEETT-TTEEE
T ss_pred             -----hhcCCCCCceeeecC-CccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCC-CCCCCCCeEEcCC-CCEEE
Confidence                 001223466544455 788888742       13599999887665543322222 2345678888885 44444


Q ss_pred             EeCCcccccc---cceee---eeecCCCceEEEEeCCCCceEEeecCC---CCcceeEEe--cCCCEEEEEEcCCCeEEE
Q 019290          159 TDSSIYFQRR---QYFMS---IATGDRSGRLLKYDPLKKNVTVMYNGL---SFPNGVALS--NNNSFLLLAESATLKILR  227 (343)
Q Consensus       159 ~~~~~~~~~~---~~~~~---~~~~~~~~~v~~~d~~~~~~~~~~~~~---~~~~~i~~~--~d~~~lyv~~~~~~~i~~  227 (343)
                      +..   |+..   ...+.   +..+.-...+..+|..+++......-.   ..|-.+.+.  |+...-|+....++.||+
T Consensus       197 SSe---Wg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~  273 (461)
T PF05694_consen  197 SSE---WGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWR  273 (461)
T ss_dssp             E-B------HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEE
T ss_pred             Eec---cCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEE
Confidence            432   2110   00011   111111346888998877765433211   223334443  445566776667889999


Q ss_pred             EEccCccccccceeeec--------------------CCCCCCceeeCCCC-CEEEEecc
Q 019290          228 FWLQGERTTYTPQLFAE--------------------MPRFPDNIKSDSKG-EFWIAMNS  266 (343)
Q Consensus       228 ~~~~~~~~~~~~~~~~~--------------------~~~~p~~i~~d~~G-~lwi~~~~  266 (343)
                      |..+.+.. =..+.++.                    .++++..|.++-|. .||++++.
T Consensus       274 ~~k~~~g~-W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~  332 (461)
T PF05694_consen  274 FYKDDDGE-WAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWL  332 (461)
T ss_dssp             EEE-ETTE-EEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETT
T ss_pred             EEEcCCCC-eeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEccc
Confidence            87643211 00111111                    13445566666665 68999998

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=89.30  E-value=5.7  Score=38.81  Aligned_cols=59  Identities=24%  Similarity=0.220  Sum_probs=41.4

Q ss_pred             CeeeEEEeCCCCeEEEEeCCCeEEEEeCCCCe-EEEcccccCCCCccCcceeEEeCCCCeEEEEeCC
Q 019290           97 RPLGIKFNPVTCDLYIADAYFGLMVVGPNGGQ-AQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSS  162 (343)
Q Consensus        97 ~p~gi~~~~~~~~l~v~~~~~gi~~~d~~~~~-~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~  162 (343)
                      ..+.+++.|++-.|.++ .++.++.||+..|. .+++    .+.+ ..++.++... ||..+.+...
T Consensus        14 ci~d~afkPDGsqL~lA-Ag~rlliyD~ndG~llqtL----KgHK-DtVycVAys~-dGkrFASG~a   73 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILA-AGSRLLVYDTSDGTLLQPL----KGHK-DTVYCVAYAK-DGKRFASGSA   73 (1081)
T ss_pred             chheeEECCCCceEEEe-cCCEEEEEeCCCccccccc----cccc-ceEEEEEEcc-CCceeccCCC
Confidence            46789999955567777 67899999997664 2222    2222 3578899998 6999886654

>smart00135 LY Low-density lipoprotein-receptor YWTD domain

Probab=89.29  E-value=1.3  Score=26.10  Aligned_cols=34  Identities=18%  Similarity=0.023  Sum_probs=26.7

Q ss_pred             CCCCCCceEEEcCCCC-eeEEEecCCEEEEEEcCC
Q 019290           32 PGVVGPESLAFDCNGE-GPYVGVSDGRILKWKAAN   65 (343)
Q Consensus        32 ~~~~~p~~l~~d~~g~-~l~~~~~~g~i~~~d~~~   65 (343)
                      .++..|.++++|+.++ ++|++.....|.+.+.++
T Consensus         6 ~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g   40 (43)
T smart00135        6 EGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDG   40 (43)
T ss_pred             CCCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCC
Confidence            3566899999999866 555777788899888765

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=89.25  E-value=28  Score=35.57  Aligned_cols=141  Identities=14%  Similarity=0.065  Sum_probs=70.1

Q ss_pred             CeeEEEecCCEEEEEEcCCCCeE-EeeecCC-CccccccCCCCCcccCCCcCCeee-EEEeCCCCeEEEEeC--------
Q 019290           47 EGPYVGVSDGRILKWKAANSGWT-EFATTAP-HRAREICDGSTNTTLEPLCGRPLG-IKFNPVTCDLYIADA--------  115 (343)
Q Consensus        47 ~~l~~~~~~g~i~~~d~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~g-i~~~~~~~~l~v~~~--------  115 (343)
                      +.+|+.+.+++|+.+|.++++.. .|..... +......    .  .........+ -.+.  ++.++++..        
T Consensus       261 ~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g----~--~~~g~~~~ts~P~V~--~g~VIvG~~v~d~~~~~  332 (764)
T TIGR03074       261 RRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMG----T--TPPGYYYPTSPPLVA--GTTVVIGGRVADNYSTD  332 (764)
T ss_pred             CEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccC----c--CCCcccccccCCEEE--CCEEEEEeccccccccc
Confidence            35888889999999999887644 2211100 0000000    0  0000000111 1233  567888742        


Q ss_pred             -CCe-EEEEeCCCCeEEEccccc---------CCC-----CccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCC
Q 019290          116 -YFG-LMVVGPNGGQAQQLASSA---------GGI-----PFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDR  179 (343)
Q Consensus       116 -~~g-i~~~d~~~~~~~~~~~~~---------~~~-----~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~  179 (343)
                       ..| |+-+|.+||+...-....         .+.     ..+.-..+++|++.|.+|+......-......+......-
T Consensus       333 ~~~G~I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y  412 (764)
T TIGR03074       333 EPSGVIRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKY  412 (764)
T ss_pred             CCCcEEEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccc
Confidence             134 889999999876543221         000     0011245678886678888654321100000010011112


Q ss_pred             CceEEEEeCCCCceEE
Q 019290          180 SGRLLKYDPLKKNVTV  195 (343)
Q Consensus       180 ~~~v~~~d~~~~~~~~  195 (343)
                      .+.|+.+|.++|+.+-
T Consensus       413 ~~slvALD~~TGk~~W  428 (764)
T TIGR03074       413 SSSLVALDATTGKERW  428 (764)
T ss_pred             cceEEEEeCCCCceEE
Confidence            5679999999998763

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=89.19  E-value=14  Score=32.09  Aligned_cols=118  Identities=10%  Similarity=0.055  Sum_probs=69.9

Q ss_pred             CCeeeEEEeCCCCeEEEEeCC-CeEEEEeCCCC-eEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceee
Q 019290           96 GRPLGIKFNPVTCDLYIADAY-FGLMVVGPNGG-QAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMS  173 (343)
Q Consensus        96 ~~p~gi~~~~~~~~l~v~~~~-~gi~~~d~~~~-~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~  173 (343)
                      ++...++.++..|.++.+... ..|..++...+ .+........ .....+..+|..| .|++..+.+-           
T Consensus        15 ~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~-~hkrsVRsvAwsp-~g~~La~aSF-----------   81 (312)
T KOG0645|consen   15 DRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDD-GHKRSVRSVAWSP-HGRYLASASF-----------   81 (312)
T ss_pred             CcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccc-cchheeeeeeecC-CCcEEEEeec-----------
Confidence            366788899833665444333 34777776532 2322211111 2235688999999 5885554332           


Q ss_pred             eeecCCCceEEEEeCCCCceEEe---ecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCc
Q 019290          174 IATGDRSGRLLKYDPLKKNVTVM---YNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGE  233 (343)
Q Consensus       174 ~~~~~~~~~v~~~d~~~~~~~~~---~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~  233 (343)
                            ...+..+....++++.+   ...-....+++++++|++| .+-+.+..+|.+..+++
T Consensus        82 ------D~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~L-ATCSRDKSVWiWe~ded  137 (312)
T KOG0645|consen   82 ------DATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYL-ATCSRDKSVWIWEIDED  137 (312)
T ss_pred             ------cceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEE-EEeeCCCeEEEEEecCC
Confidence                  23444444444565542   2333456789999999865 45567899999998854

>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A

Probab=89.05  E-value=2.7  Score=35.69  Aligned_cols=119  Identities=20%  Similarity=0.293  Sum_probs=54.5

Q ss_pred             ceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCccc-CCCcCCeeeEEEeCCCCeEEEEeCC
Q 019290           38 ESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTL-EPLCGRPLGIKFNPVTCDLYIADAY  116 (343)
Q Consensus        38 ~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~gi~~~~~~~~l~v~~~~  116 (343)
                      ..|++++.|- ||+-..+|.|++..+.+..-.......            .+.. ...-....-+.+++ ++.||..+ .
T Consensus        84 ~~i~~d~~G~-LYaV~~~G~lyR~~~~~~~~~~W~~~~------------~~~iG~~GW~~f~~vfa~~-~GvLY~i~-~  148 (229)
T PF14517_consen   84 KFIFFDPTGV-LYAVTPDGKLYRHPRPTNGSDNWIGGS------------GKKIGGTGWNDFDAVFAGP-NGVLYAIT-P  148 (229)
T ss_dssp             SEEEE-TTS--EEEEETT-EEEEES---STT--HHH-H------------SEEEE-SSGGGEEEEEE-T-TS-EEEEE-T
T ss_pred             eEEEecCCcc-EEEeccccceeeccCCCccCcchhhcc------------ceecccCCCccceEEEeCC-CccEEEEc-C
Confidence            4899999999 888888999998876443222111000            0000 01111234566666 88888886 4


Q ss_pred             Ce-EEEE-eCCCCeEEEccc--ccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCC
Q 019290          117 FG-LMVV-GPNGGQAQQLAS--SAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLK  190 (343)
Q Consensus       117 ~g-i~~~-d~~~~~~~~~~~--~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~  190 (343)
                      +| +++. .+..+.-..+..  ......-.....|...+ +|.||..+.                  .+.|||+.+.+
T Consensus       149 dg~~~~~~~p~~~~~~W~~~s~~v~~~gw~~~~~i~~~~-~g~L~~V~~------------------~G~lyr~~~p~  207 (229)
T PF14517_consen  149 DGRLYRRYRPDGGSDRWLSGSGLVGGGGWDSFHFIFFSP-DGNLWAVKS------------------NGKLYRGRPPQ  207 (229)
T ss_dssp             TE-EEEE---SSTT--HHHH-EEEESSSGGGEEEEEE-T-TS-EEEE-E------------------TTEEEEES---
T ss_pred             CCceEEeCCCCCCCCccccccceeccCCcccceEEeeCC-CCcEEEEec------------------CCEEeccCCcc
Confidence            55 6665 343322111110  11111123356778888 599998633                  46788887654

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=88.98  E-value=17  Score=32.72  Aligned_cols=79  Identities=13%  Similarity=0.105  Sum_probs=45.1

Q ss_pred             eEEEeCCCCeEEEEeCC------CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceee
Q 019290          100 GIKFNPVTCDLYIADAY------FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMS  173 (343)
Q Consensus       100 gi~~~~~~~~l~v~~~~------~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~  173 (343)
                      ..+..  ++.||+....      +.+++||+++.+++.+.......  . ....++-- ++.||+--...          
T Consensus       118 ~~~~~--~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~--r-~~~~~~~~-~~~iYv~GG~~----------  181 (323)
T TIGR03548       118 SACYK--DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEP--R-VQPVCVKL-QNELYVFGGGS----------  181 (323)
T ss_pred             eEEEE--CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCC--C-CcceEEEE-CCEEEEEcCCC----------
Confidence            34444  5788886321      35899999998888775432211  1 12223333 37899843210          


Q ss_pred             eeecCCCceEEEEeCCCCceEEee
Q 019290          174 IATGDRSGRLLKYDPLKKNVTVMY  197 (343)
Q Consensus       174 ~~~~~~~~~v~~~d~~~~~~~~~~  197 (343)
                         ......+++||+++.+.+.+.
T Consensus       182 ---~~~~~~~~~yd~~~~~W~~~~  202 (323)
T TIGR03548       182 ---NIAYTDGYKYSPKKNQWQKVA  202 (323)
T ss_pred             ---CccccceEEEecCCCeeEECC
Confidence               000124789999988877654

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=88.56  E-value=16  Score=33.31  Aligned_cols=155  Identities=16%  Similarity=0.193  Sum_probs=85.0

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEc--CCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEE
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKA--ANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIA  113 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~  113 (343)
                      .+..+.+.++++++++++...+.+.++.  +....+....                  .....++..+.+..++-.+.++
T Consensus        64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~------------------~~v~~~~~ai~~~~~~~sv~v~  125 (390)
T KOG3914|consen   64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDV------------------SCVPKRPTAISFIREDTSVLVA  125 (390)
T ss_pred             cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeE------------------eecccCcceeeeeeccceEEEE
Confidence            3566667778887777776666444443  3221221110                  0112246667777656677777


Q ss_pred             eCCCeEEEEeCCC---CeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCC
Q 019290          114 DAYFGLMVVGPNG---GQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLK  190 (343)
Q Consensus       114 ~~~~gi~~~d~~~---~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~  190 (343)
                      +....++.++...   +.-..+.    + ....+.++++.+ |+.+.++....               ..-+|.+|. .+
T Consensus       126 dkagD~~~~di~s~~~~~~~~~l----G-hvSml~dVavS~-D~~~IitaDRD---------------EkIRvs~yp-a~  183 (390)
T KOG3914|consen  126 DKAGDVYSFDILSADSGRCEPIL----G-HVSMLLDVAVSP-DDQFIITADRD---------------EKIRVSRYP-AT  183 (390)
T ss_pred             eecCCceeeeeecccccCcchhh----h-hhhhhheeeecC-CCCEEEEecCC---------------ceEEEEecC-cc
Confidence            6443366666532   2211111    1 235688999999 57766654321               123455553 22


Q ss_pred             CceEEee-cCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290          191 KNVTVMY-NGLSFPNGVALSNNNSFLLLAESATLKILRFWLQG  232 (343)
Q Consensus       191 ~~~~~~~-~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~  232 (343)
                      ..++.+. .+-.+...+++.++  ++.++..+++.|+.|++..
T Consensus       184 f~IesfclGH~eFVS~isl~~~--~~LlS~sGD~tlr~Wd~~s  224 (390)
T KOG3914|consen  184 FVIESFCLGHKEFVSTISLTDN--YLLLSGSGDKTLRLWDITS  224 (390)
T ss_pred             cchhhhccccHhheeeeeeccC--ceeeecCCCCcEEEEeccc
Confidence            3333222 22344677777643  3567888899999999875

>PLN02193 nitrile-specifier protein

Probab=88.50  E-value=24  Score=33.82  Aligned_cols=116  Identities=8%  Similarity=0.012  Sum_probs=58.8

Q ss_pred             eeEEEeCCCCeEEEEeCC--------CeEEEEeCCCCeEEEcccccCCCCccC-cceeEEeCCCCeEEEEeCCccccccc
Q 019290           99 LGIKFNPVTCDLYIADAY--------FGLMVVGPNGGQAQQLASSAGGIPFRF-TNDLDIDPNTGIVYFTDSSIYFQRRQ  169 (343)
Q Consensus        99 ~gi~~~~~~~~l~v~~~~--------~gi~~~d~~~~~~~~~~~~~~~~~~~~-~~~i~~d~~dg~l~v~~~~~~~~~~~  169 (343)
                      ++.+..  ++.||+....        +.+++||+++.+++.+......+.... -..++..  ++.||+--...      
T Consensus       169 h~~~~~--~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~--~~~lYvfGG~~------  238 (470)
T PLN02193        169 HGIAQV--GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSI--GSTLYVFGGRD------  238 (470)
T ss_pred             cEEEEE--CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEE--CCEEEEECCCC------
Confidence            344444  4678775321        238899999888776532211111111 1223333  37888843210      


Q ss_pred             ceeeeeecCCCceEEEEeCCCCceEEeecCC--CCc---ceeEEecCCCEEEEEEcC-----CCeEEEEEccC
Q 019290          170 YFMSIATGDRSGRLLKYDPLKKNVTVMYNGL--SFP---NGVALSNNNSFLLLAESA-----TLKILRFWLQG  232 (343)
Q Consensus       170 ~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~--~~~---~~i~~~~d~~~lyv~~~~-----~~~i~~~~~~~  232 (343)
                            .......+++||+.+.+++.+....  ..+   ..++.  .++.+|+..-.     ...+++|++..
T Consensus       239 ------~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~--~~~~iYv~GG~~~~~~~~~~~~yd~~t  303 (470)
T PLN02193        239 ------ASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAA--DEENVYVFGGVSATARLKTLDSYNIVD  303 (470)
T ss_pred             ------CCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEE--ECCEEEEECCCCCCCCcceEEEEECCC
Confidence                  0011346999999988877654321  111   12222  23457776422     13467777654

>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A

Probab=88.44  E-value=5.7  Score=33.75  Aligned_cols=143  Identities=18%  Similarity=0.192  Sum_probs=63.1

Q ss_pred             eEEEeCCCCeEEEEeCCCeEEEEeCC-CCeEEEccc--ccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeee
Q 019290          100 GIKFNPVTCDLYIADAYFGLMVVGPN-GGQAQQLAS--SAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIAT  176 (343)
Q Consensus       100 gi~~~~~~~~l~v~~~~~gi~~~d~~-~~~~~~~~~--~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~  176 (343)
                      -|++.+ ++.||... ..++++..+. .+.-+....  ......-.....|.+|+ .|-||..+.               
T Consensus        38 ~i~~~P-~g~lY~I~-~~~lY~~~~~~~~~~~~~~~~~~Ig~g~W~~F~~i~~d~-~G~LYaV~~---------------   99 (229)
T PF14517_consen   38 DIAAGP-NGRLYAIR-NDGLYRGSPSSSGGNTWDSGSKQIGDGGWNSFKFIFFDP-TGVLYAVTP---------------   99 (229)
T ss_dssp             EEEE-T-TS-EEEEE-TTEEEEES---STT--HHHH-EEEE-S-GGG-SEEEE-T-TS-EEEEET---------------
T ss_pred             eEEEcC-CceEEEEE-CCceEEecCCccCcccccccCcccccCcccceeEEEecC-CccEEEecc---------------
Confidence            467787 89999985 5678888322 121111100  00011123456899999 499997553               


Q ss_pred             cCCCceEEEEeCCCCce--------EEe-ecCCCCcceeEEecCCCEEEEEEcCCCeEEEEE-ccCcc-c-cccceeeec
Q 019290          177 GDRSGRLLKYDPLKKNV--------TVM-YNGLSFPNGVALSNNNSFLLLAESATLKILRFW-LQGER-T-TYTPQLFAE  244 (343)
Q Consensus       177 ~~~~~~v~~~d~~~~~~--------~~~-~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~-~~~~~-~-~~~~~~~~~  244 (343)
                         .+.|+|..+.+..-        +.+ ..+-.....+-++++| .||..+. ++++++.. +.+.. . +....++..
T Consensus       100 ---~G~lyR~~~~~~~~~~W~~~~~~~iG~~GW~~f~~vfa~~~G-vLY~i~~-dg~~~~~~~p~~~~~~W~~~s~~v~~  174 (229)
T PF14517_consen  100 ---DGKLYRHPRPTNGSDNWIGGSGKKIGGTGWNDFDAVFAGPNG-VLYAITP-DGRLYRRYRPDGGSDRWLSGSGLVGG  174 (229)
T ss_dssp             ---T-EEEEES---STT--HHH-HSEEEE-SSGGGEEEEEE-TTS--EEEEET-TE-EEEE---SSTT--HHHH-EEEES
T ss_pred             ---ccceeeccCCCccCcchhhccceecccCCCccceEEEeCCCc-cEEEEcC-CCceEEeCCCCCCCCccccccceecc
Confidence               45688876532211        122 2223335556666766 4888774 55788873 22211 0 011111111


Q ss_pred             -CCCCCCceeeCCCCCEEEEec
Q 019290          245 -MPRFPDNIKSDSKGEFWIAMN  265 (343)
Q Consensus       245 -~~~~p~~i~~d~~G~lwi~~~  265 (343)
                       .-..+..|...++|+||....
T Consensus       175 ~gw~~~~~i~~~~~g~L~~V~~  196 (229)
T PF14517_consen  175 GGWDSFHFIFFSPDGNLWAVKS  196 (229)
T ss_dssp             SSGGGEEEEEE-TTS-EEEE-E
T ss_pred             CCcccceEEeeCCCCcEEEEec
Confidence             111233466788899998833

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=88.41  E-value=6.1  Score=38.95  Aligned_cols=114  Identities=14%  Similarity=0.085  Sum_probs=73.4

Q ss_pred             eeEEEeCCCCeEEEEeCCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecC
Q 019290           99 LGIKFNPVTCDLYIADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGD  178 (343)
Q Consensus        99 ~gi~~~~~~~~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~  178 (343)
                      ..|.+++..+.+..+.-...|..||.+.|+.+..+....+.. ..+-.+..||  ..+|++++-.               
T Consensus       600 YDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~e-G~lIKv~lDP--SgiY~atScs---------------  661 (1080)
T KOG1408|consen  600 YDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHE-GDLIKVILDP--SGIYLATSCS---------------  661 (1080)
T ss_pred             EEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCC-CceEEEEECC--CccEEEEeec---------------
Confidence            456666644444444333559999999888776654433322 3456788898  4677776531               


Q ss_pred             CCceEEEEeCCCCceE-EeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290          179 RSGRLLKYDPLKKNVT-VMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQG  232 (343)
Q Consensus       179 ~~~~v~~~d~~~~~~~-~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~  232 (343)
                       ...+..||--+|+.. +.........|+.|.+|=++|+-+ +.+++|++|.+.-
T Consensus       662 -dktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISv-sgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  662 -DKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISV-SGDGCIFVWKLPL  714 (1080)
T ss_pred             -CCceEEEEeccchhhhhhcCcchheeeeeecccchhheee-cCCceEEEEECch
Confidence             345777777667642 223334557899999998877544 5789999998753

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=88.31  E-value=18  Score=32.29  Aligned_cols=96  Identities=8%  Similarity=-0.014  Sum_probs=52.9

Q ss_pred             CceEEEcCCCCeeEEEe------------------cCCEEEEEEcCCCCeEEeeecCCCccccccC-------C-CCCcc
Q 019290           37 PESLAFDCNGEGPYVGV------------------SDGRILKWKAANSGWTEFATTAPHRAREICD-------G-STNTT   90 (343)
Q Consensus        37 p~~l~~d~~g~~l~~~~------------------~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~-------~-~~~~~   90 (343)
                      .+.+.+.++|+.|++..                  .++.++.+|++|+++..-.....+...+.+.       + .....
T Consensus        59 ~He~~it~~gt~lvt~~~~~~~dls~~gg~~~g~i~d~~~~EiDi~TgevlfeW~a~DH~~~~~~~~~~~~~~~~g~~~~  138 (299)
T PF14269_consen   59 HHEFEITPDGTALVTAYNPTPADLSPVGGPEDGWILDDVFQEIDIETGEVLFEWSASDHVDPNDSYDSQDPLPGSGGSSS  138 (299)
T ss_pred             ccceEEcCCCcEEEEEccceeccccccCcCCCccEecceeEEeccCCCCEEEEEEhhheecccccccccccccCCCcCCC
Confidence            56778888899665221                  2345778888877633111111111111110       0 00011


Q ss_pred             cCCCcCCeeeEEEeCCCCeEEEEeCC-CeEEEEeCCCCeEEEcc
Q 019290           91 LEPLCGRPLGIKFNPVTCDLYIADAY-FGLMVVGPNGGQAQQLA  133 (343)
Q Consensus        91 ~~~~~~~p~gi~~~~~~~~l~v~~~~-~gi~~~d~~~~~~~~~~  133 (343)
                      ........+++..++ +|.++|+... ..|+++++++|++....
T Consensus       139 ~~~D~~HiNsV~~~~-~G~yLiS~R~~~~i~~I~~~tG~I~W~l  181 (299)
T PF14269_consen  139 FPWDYFHINSVDKDD-DGDYLISSRNTSTIYKIDPSTGKIIWRL  181 (299)
T ss_pred             CCCCccEeeeeeecC-CccEEEEecccCEEEEEECCCCcEEEEe
Confidence            112233467788887 7777777543 45999999999987654

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=88.07  E-value=23  Score=33.10  Aligned_cols=155  Identities=10%  Similarity=0.086  Sum_probs=73.2

Q ss_pred             eEEEeCCCCeEEEE-eC-CC---eEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeee
Q 019290          100 GIKFNPVTCDLYIA-DA-YF---GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSI  174 (343)
Q Consensus       100 gi~~~~~~~~l~v~-~~-~~---gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~  174 (343)
                      +..++++++.+.++ +. ++   .++.+|.++|+...-  ....   .....+...+++..+|.+.........      
T Consensus       128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d--~i~~---~~~~~~~W~~d~~~~~y~~~~~~~~~~------  196 (414)
T PF02897_consen  128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD--GIEN---PKFSSVSWSDDGKGFFYTRFDEDQRTS------  196 (414)
T ss_dssp             EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE--EEEE---EESEEEEECTTSSEEEEEECSTTTSS-------
T ss_pred             eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC--cccc---cccceEEEeCCCCEEEEEEeCcccccc------
Confidence            46777744555554 22 22   288999999865432  1111   112237777732344554432100000      


Q ss_pred             eecCCCceEEEEeCCCCceE--EeecCCCC---cceeEEecCCCEEEEEEcC--C-CeEEEEEccCc--cccccceeeec
Q 019290          175 ATGDRSGRLLKYDPLKKNVT--VMYNGLSF---PNGVALSNNNSFLLLAESA--T-LKILRFWLQGE--RTTYTPQLFAE  244 (343)
Q Consensus       175 ~~~~~~~~v~~~d~~~~~~~--~~~~~~~~---~~~i~~~~d~~~lyv~~~~--~-~~i~~~~~~~~--~~~~~~~~~~~  244 (343)
                       .......|+++...+..-.  .+......   ..++..++|++.+++....  . ..++.+++...  .. ...+.+..
T Consensus       197 -~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~-~~~~~l~~  274 (414)
T PF02897_consen  197 -DSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPD-AKPKLLSP  274 (414)
T ss_dssp             -CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS--SEEEEEE
T ss_pred             -cCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCc-CCcEEEeC
Confidence             0001345888877655432  33333222   3467788999988875433  2 46888887652  11 23333332


Q ss_pred             -CCCCCCceeeCCCCCEEEEeccCC
Q 019290          245 -MPRFPDNIKSDSKGEFWIAMNSAR  268 (343)
Q Consensus       245 -~~~~p~~i~~d~~G~lwi~~~~~~  268 (343)
                       ..+ ....+....+.+|+.++..+
T Consensus       275 ~~~~-~~~~v~~~~~~~yi~Tn~~a  298 (414)
T PF02897_consen  275 REDG-VEYYVDHHGDRLYILTNDDA  298 (414)
T ss_dssp             SSSS--EEEEEEETTEEEEEE-TT-
T ss_pred             CCCc-eEEEEEccCCEEEEeeCCCC
Confidence             221 11112223557888877533

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=87.62  E-value=22  Score=32.34  Aligned_cols=32  Identities=16%  Similarity=0.083  Sum_probs=21.8

Q ss_pred             eEEEeCCCCeEEEEeCC------------CeEEEEeCCCCeEEEcc
Q 019290          100 GIKFNPVTCDLYIADAY------------FGLMVVGPNGGQAQQLA  133 (343)
Q Consensus       100 gi~~~~~~~~l~v~~~~------------~gi~~~d~~~~~~~~~~  133 (343)
                      +++..  ++.||+....            +.+++||+.+.+++.+.
T Consensus        58 ~~~~~--~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~  101 (346)
T TIGR03547        58 VAAAI--DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLD  101 (346)
T ss_pred             eEEEE--CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCC
Confidence            34444  5788887421            23789999998888764

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=87.35  E-value=21  Score=31.80  Aligned_cols=154  Identities=9%  Similarity=-0.005  Sum_probs=79.9

Q ss_pred             CceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCC
Q 019290           37 PESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAY  116 (343)
Q Consensus        37 p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~  116 (343)
                      ..+|++-|.|++-.+-..++.+..||.-+++...+.                    .....+.-+.+++++..+++. ..
T Consensus       130 Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~--------------------~L~~~at~v~w~~~Gd~F~v~-~~  188 (362)
T KOG0294|consen  130 VTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVL--------------------NLKNKATLVSWSPQGDHFVVS-GR  188 (362)
T ss_pred             cceeEecCCCceEEEEcCCceeeeehhhcCccceee--------------------ccCCcceeeEEcCCCCEEEEE-ec
Confidence            556666666663333334455555665444322221                    111234457777744456665 45


Q ss_pred             CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCce-EE
Q 019290          117 FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNV-TV  195 (343)
Q Consensus       117 ~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~-~~  195 (343)
                      ++|-.+..++.++-.....  .   ..+..+.+.. .+.+.++-.                  ...|..+|.+++.. ..
T Consensus       189 ~~i~i~q~d~A~v~~~i~~--~---~r~l~~~~l~-~~~L~vG~d------------------~~~i~~~D~ds~~~~~~  244 (362)
T KOG0294|consen  189 NKIDIYQLDNASVFREIEN--P---KRILCATFLD-GSELLVGGD------------------NEWISLKDTDSDTPLTE  244 (362)
T ss_pred             cEEEEEecccHhHhhhhhc--c---ccceeeeecC-CceEEEecC------------------CceEEEeccCCCcccee
Confidence            6766666654332211111  0   1244455555 367777433                  23466667654332 22


Q ss_pred             eecCCCCcceeEE-ecCCCEEEEEEcCCCeEEEEEccCccc
Q 019290          196 MYNGLSFPNGVAL-SNNNSFLLLAESATLKILRFWLQGERT  235 (343)
Q Consensus       196 ~~~~~~~~~~i~~-~~d~~~lyv~~~~~~~i~~~~~~~~~~  235 (343)
                      +...-.+..++++ ......+.++.+.+|.|.+|+++-+.+
T Consensus       245 ~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k  285 (362)
T KOG0294|consen  245 FLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETK  285 (362)
T ss_pred             eecchhheeeeEEEecCCceEEEEeccCceEEEEEcccccc
Confidence            2333344566663 333345677777789999999876433

>PF14339 DUF4394: Domain of unknown function (DUF4394)

Probab=87.02  E-value=18  Score=30.88  Aligned_cols=114  Identities=19%  Similarity=0.303  Sum_probs=66.8

Q ss_pred             CeeeEEEeCCCCeEEEEeCCCeEEEEeCCCCeEEEc--ccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeee
Q 019290           97 RPLGIKFNPVTCDLYIADAYFGLMVVGPNGGQAQQL--ASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSI  174 (343)
Q Consensus        97 ~p~gi~~~~~~~~l~v~~~~~gi~~~d~~~~~~~~~--~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~  174 (343)
                      ...||.+.+.++.||-.....+||.+|+.+|..+.+  ........ ....++.+.|.-++|-+...             
T Consensus        28 ~l~GID~Rpa~G~LYgl~~~g~lYtIn~~tG~aT~vg~s~~~~al~-g~~~gvDFNP~aDRlRvvs~-------------   93 (236)
T PF14339_consen   28 SLVGIDFRPANGQLYGLGSTGRLYTINPATGAATPVGASPLTVALS-GTAFGVDFNPAADRLRVVSN-------------   93 (236)
T ss_pred             eEEEEEeecCCCCEEEEeCCCcEEEEECCCCeEEEeeccccccccc-CceEEEecCcccCcEEEEcc-------------
Confidence            457999999889999775567799999999987766  22211111 11344455554356655321             


Q ss_pred             eecCCCceEEEEeCCCCceEEeecCC----------CCc--ceeEEecC------CCEEEEEEcCCCeEEEEE
Q 019290          175 ATGDRSGRLLKYDPLKKNVTVMYNGL----------SFP--NGVALSNN------NSFLLLAESATLKILRFW  229 (343)
Q Consensus       175 ~~~~~~~~v~~~d~~~~~~~~~~~~~----------~~~--~~i~~~~d------~~~lyv~~~~~~~i~~~~  229 (343)
                           .+.=+|++++++.+......+          ..|  .+.++...      .-.||-.+...+.|++-.
T Consensus        94 -----~GqNlR~npdtGav~~~Dg~L~y~~gd~~~G~~p~v~aaAYTNs~~g~~t~TtLy~ID~~~~~Lv~Q~  161 (236)
T PF14339_consen   94 -----TGQNLRLNPDTGAVTIVDGNLAYAAGDMNAGTTPGVTAAAYTNSFAGATTSTTLYDIDTTLDALVTQN  161 (236)
T ss_pred             -----CCcEEEECCCCCCceeccCccccCCCccccCCCCceEEEEEecccCCCccceEEEEEecCCCeEEEec
Confidence                 456788888888743222111          112  23344322      345777777777776653

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=86.99  E-value=36  Score=34.27  Aligned_cols=61  Identities=11%  Similarity=0.138  Sum_probs=41.2

Q ss_pred             CCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEecc
Q 019290          201 SFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNS  266 (343)
Q Consensus       201 ~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~~  266 (343)
                      ...++++++.+|..||-.. .++-+.+|.+++    ++.+.+..+.+-...+++.+|+.++.....
T Consensus       252 ~~V~~L~fS~~G~~LlSGG-~E~VLv~Wq~~T----~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~  312 (792)
T KOG1963|consen  252 DEVNSLSFSSDGAYLLSGG-REGVLVLWQLET----GKKQFLPRLGSPILHIVVSPDSDLYSLVLE  312 (792)
T ss_pred             cccceeEEecCCceEeecc-cceEEEEEeecC----CCcccccccCCeeEEEEEcCCCCeEEEEec
Confidence            4578999999999887554 467788888776    333333335544566788888877665443

>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]

Probab=86.84  E-value=20  Score=31.04  Aligned_cols=96  Identities=18%  Similarity=0.240  Sum_probs=51.3

Q ss_pred             EEEEeCCCCeEEEccccc--CCCCccCcceeEE--eCCCCeEEEEeCCcccccccceeeeeecCCCceEEE---EeCCCC
Q 019290          119 LMVVGPNGGQAQQLASSA--GGIPFRFTNDLDI--DPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLK---YDPLKK  191 (343)
Q Consensus       119 i~~~d~~~~~~~~~~~~~--~~~~~~~~~~i~~--d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~---~d~~~~  191 (343)
                      ++.+|++.+..+.+....  .......+.+++.  ++..|.+|+=...+                .|.+..   .|...|
T Consensus       128 ~y~Idp~~~~L~sitD~n~p~ss~~s~~YGl~lyrs~ktgd~yvfV~~~----------------qG~~~Qy~l~d~gnG  191 (364)
T COG4247         128 FYKIDPNPQYLESITDSNAPYSSSSSSAYGLALYRSPKTGDYYVFVNRR----------------QGDIAQYKLIDQGNG  191 (364)
T ss_pred             EEEeCCCccceeeccCCCCccccCcccceeeEEEecCCcCcEEEEEecC----------------CCceeEEEEEecCCc
Confidence            788899888777665442  1222345666664  44336666522211                122221   232223


Q ss_pred             ce-----EEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290          192 NV-----TVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQG  232 (343)
Q Consensus       192 ~~-----~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~  232 (343)
                      ++     +.+. -.....|+..+..-..||+++. +-.||+|..+.
T Consensus       192 kv~~k~vR~fk-~~tQTEG~VaDdEtG~LYIaeE-dvaiWK~~Aep  235 (364)
T COG4247         192 KVGTKLVRQFK-IPTQTEGMVADDETGFLYIAEE-DVAIWKYEAEP  235 (364)
T ss_pred             eEcceeeEeee-cCCcccceeeccccceEEEeec-cceeeecccCC
Confidence            22     1111 1123567777766678999975 56899998653

>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller

Probab=86.57  E-value=1.1  Score=26.23  Aligned_cols=31  Identities=29%  Similarity=0.271  Sum_probs=22.2

Q ss_pred             ccccccCCCC-CCCceEEEcCCCCeeEEEecC
Q 019290           25 SYQQLQLPGV-VGPESLAFDCNGEGPYVGVSD   55 (343)
Q Consensus        25 ~~~~~~~~~~-~~p~~l~~d~~g~~l~~~~~~   55 (343)
                      |.+++..+.. ..+.+|++|++|+++.++..+
T Consensus         2 w~~~lG~~~~~~~~~~IavD~~GNiYv~G~T~   33 (38)
T PF06739_consen    2 WSTQLGGPGAQDYGNGIAVDSNGNIYVTGYTN   33 (38)
T ss_pred             cEEEeCCCCCceeEEEEEECCCCCEEEEEeec
Confidence            5677776743 459999999999955555443

SBBP stands for Seven Bladed Beta Propeller.

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=86.11  E-value=14  Score=33.76  Aligned_cols=106  Identities=16%  Similarity=0.171  Sum_probs=63.7

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      +--+|+++...+.+|.+...+++.+-|..+++-..+....                 ...+.+.++..+|.++.+.+. +
T Consensus       107 NIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~-----------------~~~~~VY~m~~~P~DN~~~~~-t  168 (609)
T KOG4227|consen  107 NIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANEN-----------------NNRGDVYHMDQHPTDNTLIVV-T  168 (609)
T ss_pred             ceEEEEEccCCeeEecCCCcceeEeeecccceeeeeeccc-----------------CcccceeecccCCCCceEEEE-e
Confidence            3458999999888999999999999888776544433221                 122346788888854444444 4


Q ss_pred             CCe-EEEEeCCCCe--EEEcccccCCCCccCcceeEEeCCCCeEEEEeCC
Q 019290          116 YFG-LMVVGPNGGQ--AQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSS  162 (343)
Q Consensus       116 ~~g-i~~~d~~~~~--~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~  162 (343)
                      ..+ |..+|.+..+  ...+.....+   ...+.+.+.|..-.|..++..
T Consensus       169 ~~~~V~~~D~Rd~~~~~~~~~~AN~~---~~F~t~~F~P~~P~Li~~~~~  215 (609)
T KOG4227|consen  169 RAKLVSFIDNRDRQNPISLVLPANSG---KNFYTAEFHPETPALILVNSE  215 (609)
T ss_pred             cCceEEEEeccCCCCCCceeeecCCC---ccceeeeecCCCceeEEeccc
Confidence            555 7777776443  1111111111   235667777754456555543

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=86.11  E-value=20  Score=32.69  Aligned_cols=116  Identities=18%  Similarity=0.182  Sum_probs=73.3

Q ss_pred             eeeEEEeC-CCCeEEEEeCCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeee
Q 019290           98 PLGIKFNP-VTCDLYIADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIAT  176 (343)
Q Consensus        98 p~gi~~~~-~~~~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~  176 (343)
                      -.+|.+++ ..|+|.-+|...+|+...+.+|.++.-.....+ ....+.++...|....++++.+-              
T Consensus       214 Gy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~g-H~~SVEDLqWSptE~~vfaScS~--------------  278 (440)
T KOG0302|consen  214 GYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTG-HTKSVEDLQWSPTEDGVFASCSC--------------  278 (440)
T ss_pred             ceeeecccccccccccCccccceEeeeeccCceeecCccccc-cccchhhhccCCccCceEEeeec--------------
Confidence            34566655 246688777777888888888876643222122 23567888888866778886653              


Q ss_pred             cCCCceEEEEeCCCCceE-Ee--ecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290          177 GDRSGRLLKYDPLKKNVT-VM--YNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQG  232 (343)
Q Consensus       177 ~~~~~~v~~~d~~~~~~~-~~--~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~  232 (343)
                         .+.|-.+|...+..+ .+  .......|.|.+..+.. +..+...+|.+.+||+..
T Consensus       279 ---DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~-lLasG~DdGt~~iwDLR~  333 (440)
T KOG0302|consen  279 ---DGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREP-LLASGGDDGTLSIWDLRQ  333 (440)
T ss_pred             ---CceEEEEEecCCCccceeEeeccCCceeeEEccCCcc-eeeecCCCceEEEEEhhh
Confidence               445666666544211 11  22234567777776554 677777889999999864

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=85.93  E-value=37  Score=33.31  Aligned_cols=50  Identities=8%  Similarity=0.027  Sum_probs=33.1

Q ss_pred             eEEEEeCCCCce-EEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290          182 RLLKYDPLKKNV-TVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQG  232 (343)
Q Consensus       182 ~v~~~d~~~~~~-~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~  232 (343)
                      .|-.||..+.+. ..+...-....+++++++|+.+ .+-..+++|.+|+...
T Consensus       701 Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~-AtVcKDg~~rVy~Prs  751 (1012)
T KOG1445|consen  701 TIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRI-ATVCKDGTLRVYEPRS  751 (1012)
T ss_pred             eeeeeehhhhhhhheeccCcCceeEEEECCCCcce-eeeecCceEEEeCCCC
Confidence            455666654432 2344444567899999999854 4445689999998654

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=84.76  E-value=28  Score=30.85  Aligned_cols=90  Identities=18%  Similarity=0.216  Sum_probs=57.6

Q ss_pred             cccccCCCCC--CCceEEEcCC-CCeeEEEecCCEEEEEEcCCC-CeEEeeecCCCccccccCCCCCcccCCCcCCeeeE
Q 019290           26 YQQLQLPGVV--GPESLAFDCN-GEGPYVGVSDGRILKWKAANS-GWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGI  101 (343)
Q Consensus        26 ~~~~~~~~~~--~p~~l~~d~~-g~~l~~~~~~g~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi  101 (343)
                      .+.+++|.-+  +...|+++|. ..++.++..++.|..|+.+.. ....                  +......+.+..+
T Consensus        17 ~kd~ev~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~------------------ka~~~~~~PvL~v   78 (347)
T KOG0647|consen   17 NKDYEVPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP------------------KAQQSHDGPVLDV   78 (347)
T ss_pred             ccceecCCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccc------------------hhhhccCCCeEEE
Confidence            4556665422  4668999994 554457889998888876542 1100                  1111223345678


Q ss_pred             EEeCCCCeEEEEeCCCeEEEEeCCCCeEEEcc
Q 019290          102 KFNPVTCDLYIADAYFGLMVVGPNGGQAQQLA  133 (343)
Q Consensus       102 ~~~~~~~~l~v~~~~~gi~~~d~~~~~~~~~~  133 (343)
                      +..+++..+|.+.....+-.+|+.++++..+.
T Consensus        79 ~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~  110 (347)
T KOG0647|consen   79 CWSDDGSKVFSGGCDKQAKLWDLASGQVSQVA  110 (347)
T ss_pred             EEccCCceEEeeccCCceEEEEccCCCeeeee
Confidence            88875556777765555899999999887663

>KOG4328 consensus WD40 protein [Function unknown]

Probab=84.67  E-value=35  Score=31.93  Aligned_cols=153  Identities=22%  Similarity=0.267  Sum_probs=84.7

Q ss_pred             ceEEEcCCCC--eeEEEecCCEEEEEEcCCCC-----eEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCC-Ce
Q 019290           38 ESLAFDCNGE--GPYVGVSDGRILKWKAANSG-----WTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVT-CD  109 (343)
Q Consensus        38 ~~l~~d~~g~--~l~~~~~~g~i~~~d~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~-~~  109 (343)
                      .++++-|..+  ++-++...|+|..||..+++     +..+.                    ...+.+.+|.+.+-+ ..
T Consensus       190 t~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~--------------------~hs~~Vs~l~F~P~n~s~  249 (498)
T KOG4328|consen  190 TSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFT--------------------PHSGPVSGLKFSPANTSQ  249 (498)
T ss_pred             EEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEec--------------------cCCccccceEecCCChhh
Confidence            4666777544  33356667888888875321     11111                    222334567887622 35


Q ss_pred             EEEEeCCCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeC
Q 019290          110 LYIADAYFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDP  188 (343)
Q Consensus       110 l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~  188 (343)
                      +|.+ ...| |...|.++.....+......  ..+..++.+..++..+++++.                  .|..-.+|.
T Consensus       250 i~ss-SyDGtiR~~D~~~~i~e~v~s~~~d--~~~fs~~d~~~e~~~vl~~~~------------------~G~f~~iD~  308 (498)
T KOG4328|consen  250 IYSS-SYDGTIRLQDFEGNISEEVLSLDTD--NIWFSSLDFSAESRSVLFGDN------------------VGNFNVIDL  308 (498)
T ss_pred             eeee-ccCceeeeeeecchhhHHHhhcCcc--ceeeeeccccCCCccEEEeec------------------ccceEEEEe
Confidence            7766 4666 77778887665554433211  122333444433355555443                  233334444


Q ss_pred             CCCc--eEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEcc
Q 019290          189 LKKN--VTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQ  231 (343)
Q Consensus       189 ~~~~--~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~  231 (343)
                      .++.  ...+.-.-....++++.|-...+..+...++....||+.
T Consensus       309 R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R  353 (498)
T KOG4328|consen  309 RTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLR  353 (498)
T ss_pred             ecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehh
Confidence            3332  222221223678899999888788888888888889875

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=83.38  E-value=33  Score=30.66  Aligned_cols=178  Identities=13%  Similarity=0.055  Sum_probs=88.5

Q ss_pred             CCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEe-CCCeEEEEe
Q 019290           45 NGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIAD-AYFGLMVVG  123 (343)
Q Consensus        45 ~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~-~~~gi~~~d  123 (343)
                      .+..+.+...+..|+.|+..++.+..+-                    .....-+..+++| +|++..+. ....+..+.
T Consensus       198 ~~k~imsas~dt~i~lw~lkGq~L~~id--------------------tnq~~n~~aavSP-~GRFia~~gFTpDVkVwE  256 (420)
T KOG2096|consen  198 NAKYIMSASLDTKICLWDLKGQLLQSID--------------------TNQSSNYDAAVSP-DGRFIAVSGFTPDVKVWE  256 (420)
T ss_pred             CceEEEEecCCCcEEEEecCCceeeeec--------------------cccccccceeeCC-CCcEEEEecCCCCceEEE
Confidence            3443445567778999998876555442                    1111234566777 66655442 222233322


Q ss_pred             ---CCCCeEEEcccc--cCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeC--------CC
Q 019290          124 ---PNGGQAQQLASS--AGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDP--------LK  190 (343)
Q Consensus       124 ---~~~~~~~~~~~~--~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~--------~~  190 (343)
                         .+.|.++.....  ..+. ...+..+++.+ +.+-.++.+.                 .|..-.||.        +.
T Consensus       257 ~~f~kdG~fqev~rvf~LkGH-~saV~~~aFsn-~S~r~vtvSk-----------------DG~wriwdtdVrY~~~qDp  317 (420)
T KOG2096|consen  257 PIFTKDGTFQEVKRVFSLKGH-QSAVLAAAFSN-SSTRAVTVSK-----------------DGKWRIWDTDVRYEAGQDP  317 (420)
T ss_pred             EEeccCcchhhhhhhheeccc-hhheeeeeeCC-CcceeEEEec-----------------CCcEEEeeccceEecCCCc
Confidence               244555544221  1111 13456667776 3555554432                 122222221        11


Q ss_pred             CceE----EeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEecc
Q 019290          191 KNVT----VMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNS  266 (343)
Q Consensus       191 ~~~~----~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~~  266 (343)
                      +-++    .+......|.-+.++|.|+.|-++  .+..|-.|.........+.+.+  ..+-...|..+++|+..+++..
T Consensus       318 k~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s--~gs~l~~~~se~g~~~~~~e~~--h~~~Is~is~~~~g~~~atcGd  393 (420)
T KOG2096|consen  318 KILKEGSAPLHAAGSEPVRLELSPSGDSLAVS--FGSDLKVFASEDGKDYPELEDI--HSTTISSISYSSDGKYIATCGD  393 (420)
T ss_pred             hHhhcCCcchhhcCCCceEEEeCCCCcEEEee--cCCceEEEEcccCccchhHHHh--hcCceeeEEecCCCcEEeeecc
Confidence            1111    112234457788999999876554  3556766654321110111111  2233567888999988887765

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=83.19  E-value=24  Score=32.72  Aligned_cols=117  Identities=15%  Similarity=0.146  Sum_probs=66.7

Q ss_pred             eeEEEeCC-CCeEEEEeCCCeEEEEeCCCCeEE--Ec-ccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeee
Q 019290           99 LGIKFNPV-TCDLYIADAYFGLMVVGPNGGQAQ--QL-ASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSI  174 (343)
Q Consensus        99 ~gi~~~~~-~~~l~v~~~~~gi~~~d~~~~~~~--~~-~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~  174 (343)
                      .|++..+. .+.|.-+.....+..+|.......  .+ ...........++++++.+.+..+|.+...            
T Consensus       181 ~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~d------------  248 (422)
T KOG0264|consen  181 YGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGD------------  248 (422)
T ss_pred             cccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecC------------
Confidence            34555542 234444433344777766432211  01 011111112457788877755566665433            


Q ss_pred             eecCCCceEEEEeCCCC--ceE-EeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290          175 ATGDRSGRLLKYDPLKK--NVT-VMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQG  232 (343)
Q Consensus       175 ~~~~~~~~v~~~d~~~~--~~~-~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~  232 (343)
                           .+.+..+|..++  +.. .........+.++|.|-+..+..+.+.+++|..||+..
T Consensus       249 -----d~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRn  304 (422)
T KOG0264|consen  249 -----DGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRN  304 (422)
T ss_pred             -----CCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechh
Confidence                 456788887632  221 12223455789999998888999988899999999753

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=82.95  E-value=34  Score=30.49  Aligned_cols=72  Identities=21%  Similarity=0.272  Sum_probs=48.6

Q ss_pred             cCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEE-EeCCCCceEE-eecCC--CCcceeEEecCCCEEEE
Q 019290          142 RFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLK-YDPLKKNVTV-MYNGL--SFPNGVALSNNNSFLLL  217 (343)
Q Consensus       142 ~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~-~d~~~~~~~~-~~~~~--~~~~~i~~~~d~~~lyv  217 (343)
                      ..+..+++.. +|.+..+.+.                 .|.+.| ||..+|.... +-.+.  .....++|+++...|-+
T Consensus       182 s~Iacv~Ln~-~Gt~vATaSt-----------------kGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~Lav  243 (346)
T KOG2111|consen  182 SDIACVALNL-QGTLVATAST-----------------KGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAV  243 (346)
T ss_pred             CceeEEEEcC-CccEEEEecc-----------------CcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEE
Confidence            3466677777 5888886654                 566555 5877676533 22222  23578999999986655


Q ss_pred             EEcCCCeEEEEEccC
Q 019290          218 AESATLKILRFWLQG  232 (343)
Q Consensus       218 ~~~~~~~i~~~~~~~  232 (343)
                      + +..++|..|.+..
T Consensus       244 s-SdKgTlHiF~l~~  257 (346)
T KOG2111|consen  244 S-SDKGTLHIFSLRD  257 (346)
T ss_pred             E-cCCCeEEEEEeec
Confidence            5 5689999999875

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=82.57  E-value=12  Score=36.14  Aligned_cols=109  Identities=17%  Similarity=0.204  Sum_probs=65.3

Q ss_pred             CCeeeEEEeCCCCeEEEEeCCCeEEEEeCCCCeE-EEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeee
Q 019290           96 GRPLGIKFNPVTCDLYIADAYFGLMVVGPNGGQA-QQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSI  174 (343)
Q Consensus        96 ~~p~gi~~~~~~~~l~v~~~~~gi~~~d~~~~~~-~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~  174 (343)
                      +.+....|++..-.++|+ +.+.|..||+-.+.+ +.+.   .+  ..++.++++++.+++|+++..             
T Consensus       567 G~vq~v~FHPs~p~lfVa-Tq~~vRiYdL~kqelvKkL~---tg--~kwiS~msihp~GDnli~gs~-------------  627 (733)
T KOG0650|consen  567 GLVQRVKFHPSKPYLFVA-TQRSVRIYDLSKQELVKKLL---TG--SKWISSMSIHPNGDNLILGSY-------------  627 (733)
T ss_pred             CceeEEEecCCCceEEEE-eccceEEEehhHHHHHHHHh---cC--CeeeeeeeecCCCCeEEEecC-------------
Confidence            346678889867788998 578899999864332 1221   11  246788999986556777543             


Q ss_pred             eecCCCceEEEEeCCC--CceEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEE
Q 019290          175 ATGDRSGRLLKYDPLK--KNVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFW  229 (343)
Q Consensus       175 ~~~~~~~~v~~~d~~~--~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~  229 (343)
                           ..++.-||.+-  +-.+.+--.-.....+++++.= -|+++.+..+.+.+|.
T Consensus       628 -----d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ry-PLfas~sdDgtv~Vfh  678 (733)
T KOG0650|consen  628 -----DKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRY-PLFASGSDDGTVIVFH  678 (733)
T ss_pred             -----CCeeEEEEcccCcchhHHhhhhhhhhhhhhhcccc-ceeeeecCCCcEEEEe
Confidence                 34566677642  2222221111223456666432 3677777677777776

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=82.55  E-value=56  Score=32.67  Aligned_cols=31  Identities=19%  Similarity=0.251  Sum_probs=25.4

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCC
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANS   66 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~   66 (343)
                      +-++|++.|+|.+|-.+...|.|..|+....
T Consensus       461 G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l  491 (1080)
T KOG1408|consen  461 GFRALAVSPDGQHLASGDRGGNLRVYDLQEL  491 (1080)
T ss_pred             ceEEEEECCCcceecccCccCceEEEEehhh
Confidence            4679999999998878888888888887553

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.50  E-value=48  Score=31.87  Aligned_cols=36  Identities=14%  Similarity=0.151  Sum_probs=21.6

Q ss_pred             CeeeEEEeCCCCeEEEEeC--CCeEEEEeCCCCeEEEc
Q 019290           97 RPLGIKFNPVTCDLYIADA--YFGLMVVGPNGGQAQQL  132 (343)
Q Consensus        97 ~p~gi~~~~~~~~l~v~~~--~~gi~~~d~~~~~~~~~  132 (343)
                      .|+-+.+...+.+|.+-+.  .++|+.+|.+.|++..-
T Consensus       334 ~P~K~mL~~~dsnlil~~~~~~~~l~klDIE~GKIVeE  371 (644)
T KOG2395|consen  334 DPHKAMLHRADSNLILMDGGEQDKLYKLDIERGKIVEE  371 (644)
T ss_pred             CcchhhhhccccceEeeCCCCcCcceeeecccceeeeE
Confidence            3444333333445544433  36799999999987543

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=81.46  E-value=6.3  Score=36.73  Aligned_cols=110  Identities=16%  Similarity=0.202  Sum_probs=62.7

Q ss_pred             eeEEEeCCCCeEEEEeCCCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeec
Q 019290           99 LGIKFNPVTCDLYIADAYFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATG  177 (343)
Q Consensus        99 ~gi~~~~~~~~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~  177 (343)
                      .-+-|-| -..|+++....| +...|..+|+...-.....+    ...-+...|. +-+.- .                +
T Consensus       213 ~rLeFLP-yHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G----~~~vm~qNP~-NaVih-~----------------G  269 (545)
T KOG1272|consen  213 ARLEFLP-YHFLLVAASEAGFLKYQDVSTGKLVASIRTGAG----RTDVMKQNPY-NAVIH-L----------------G  269 (545)
T ss_pred             hhhcccc-hhheeeecccCCceEEEeechhhhhHHHHccCC----ccchhhcCCc-cceEE-E----------------c
Confidence            3445555 556666655667 55567777764322111111    1223344453 22221 1                2


Q ss_pred             CCCceEEEEeCCCCceE-EeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290          178 DRSGRLLKYDPLKKNVT-VMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQG  232 (343)
Q Consensus       178 ~~~~~v~~~d~~~~~~~-~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~  232 (343)
                      ...|.|..|.|...+.- .+.+.....++++++++|.++ ++.-.+..+-+||+..
T Consensus       270 hsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YM-aTtG~Dr~~kIWDlR~  324 (545)
T KOG1272|consen  270 HSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYM-ATTGLDRKVKIWDLRN  324 (545)
T ss_pred             CCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEE-eecccccceeEeeecc
Confidence            23577888888765532 234566778999999988744 4444578899999754

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=81.40  E-value=41  Score=30.32  Aligned_cols=185  Identities=10%  Similarity=-0.009  Sum_probs=94.8

Q ss_pred             CeeEEEecCCEEEEEEcCCCC-eEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeC--CCCeEEEEeCCCeEEEEe
Q 019290           47 EGPYVGVSDGRILKWKAANSG-WTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNP--VTCDLYIADAYFGLMVVG  123 (343)
Q Consensus        47 ~~l~~~~~~g~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~--~~~~l~v~~~~~gi~~~d  123 (343)
                      +.+-++-.+|.+..||+.++. ..+|..                    .....+++.|..  ....++.+.+..-|..+|
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~--------------------~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD  100 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKG--------------------PPATTNGVRFISCDSPHGVISCSSDGTVRLWD  100 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecC--------------------CCCcccceEEecCCCCCeeEEeccCCeEEEEE
Confidence            446677789999999998743 223321                    112234666654  234677774333488899


Q ss_pred             CCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCce--EEe-ecCC
Q 019290          124 PNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNV--TVM-YNGL  200 (343)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~--~~~-~~~~  200 (343)
                      .++..-....... ..+....+.++..-+ +++.....-.             -.....|+.||....+.  ..+ ....
T Consensus       101 ~Rs~~e~a~~~~~-~~~~~~f~~ld~nck-~~ii~~GtE~-------------~~s~A~v~lwDvR~~qq~l~~~~eSH~  165 (376)
T KOG1188|consen  101 IRSQAESARISWT-QQSGTPFICLDLNCK-KNIIACGTEL-------------TRSDASVVLWDVRSEQQLLRQLNESHN  165 (376)
T ss_pred             eecchhhhheecc-CCCCCcceEeeccCc-CCeEEecccc-------------ccCceEEEEEEeccccchhhhhhhhcc
Confidence            8754322211111 111112233333323 5555533210             01123577777642221  111 1223


Q ss_pred             CCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCC--CEEEEecc
Q 019290          201 SFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKG--EFWIAMNS  266 (343)
Q Consensus       201 ~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G--~lwi~~~~  266 (343)
                      ....-+.|+|....+.++.+.+|-+..||+..+..-.......+......-+..-.++  +||+-++.
T Consensus       166 DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~  233 (376)
T KOG1188|consen  166 DDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHM  233 (376)
T ss_pred             CcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEcc
Confidence            3456788999887888999999999999987642201111111111112223344455  78888776

>PLN02193 nitrile-specifier protein

Probab=80.95  E-value=54  Score=31.42  Aligned_cols=143  Identities=12%  Similarity=0.064  Sum_probs=75.0

Q ss_pred             EEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCC-eeeEEEeCCCCeEEEEeCC------CeEEEEeCCCCeE
Q 019290           57 RILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGR-PLGIKFNPVTCDLYIADAY------FGLMVVGPNGGQA  129 (343)
Q Consensus        57 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~gi~~~~~~~~l~v~~~~------~gi~~~d~~~~~~  129 (343)
                      .+++||+.+.+|.........               +...+ -+.++..  ++.||+....      +.++++|+.+.++
T Consensus       194 ~v~~yD~~~~~W~~~~~~g~~---------------P~~~~~~~~~v~~--~~~lYvfGG~~~~~~~ndv~~yD~~t~~W  256 (470)
T PLN02193        194 HLYVFDLETRTWSISPATGDV---------------PHLSCLGVRMVSI--GSTLYVFGGRDASRQYNGFYSFDTTTNEW  256 (470)
T ss_pred             cEEEEECCCCEEEeCCCCCCC---------------CCCcccceEEEEE--CCEEEEECCCCCCCCCccEEEEECCCCEE
Confidence            488999999888764311100               00001 1223333  5678876321      3589999999888


Q ss_pred             EEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEeecCC-----CCcc
Q 019290          130 QQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGL-----SFPN  204 (343)
Q Consensus       130 ~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-----~~~~  204 (343)
                      +.+......+....-+.++...  +.||+--....            ......+++||+.+.+++.+....     ..-.
T Consensus       257 ~~l~~~~~~P~~R~~h~~~~~~--~~iYv~GG~~~------------~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~  322 (470)
T PLN02193        257 KLLTPVEEGPTPRSFHSMAADE--ENVYVFGGVSA------------TARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGA  322 (470)
T ss_pred             EEcCcCCCCCCCccceEEEEEC--CEEEEECCCCC------------CCCcceEEEEECCCCEEEeCCCCCCCCCCCCCc
Confidence            8765432111112223444443  78888432100            001235889999888776553211     1111


Q ss_pred             eeEEecCCCEEEEEEcC----CCeEEEEEccC
Q 019290          205 GVALSNNNSFLLLAESA----TLKILRFWLQG  232 (343)
Q Consensus       205 ~i~~~~d~~~lyv~~~~----~~~i~~~~~~~  232 (343)
                      .+++ -+++ +|+..-.    .+.+++||+..
T Consensus       323 ~~~~-~~gk-iyviGG~~g~~~~dv~~yD~~t  352 (470)
T PLN02193        323 GLEV-VQGK-VWVVYGFNGCEVDDVHYYDPVQ  352 (470)
T ss_pred             EEEE-ECCc-EEEEECCCCCccCceEEEECCC
Confidence            2333 2444 6664321    25689999875

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=80.71  E-value=37  Score=29.40  Aligned_cols=167  Identities=15%  Similarity=0.133  Sum_probs=83.4

Q ss_pred             cccCCCCCCCceEEEcC--CCCeeEEE------ecCCEEEEEEcC-CCCeEEeeecCCCccccccCCCCCcccCCCcCCe
Q 019290           28 QLQLPGVVGPESLAFDC--NGEGPYVG------VSDGRILKWKAA-NSGWTEFATTAPHRAREICDGSTNTTLEPLCGRP   98 (343)
Q Consensus        28 ~~~~~~~~~p~~l~~d~--~g~~l~~~------~~~g~i~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p   98 (343)
                      .+..|++ +.+++.++|  ++++..++      ..+|+|+..+.+ .+.+.++..-                  ......
T Consensus         3 ~~~tpgf-~GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~------------------d~~D~L   63 (311)
T KOG0277|consen    3 THTTPGF-HGYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSY------------------DTEDGL   63 (311)
T ss_pred             ceecCCc-ccceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEee------------------ecccce
Confidence            3455653 458888887  45533332      247889999885 4444444210                  111224


Q ss_pred             eeEEEeCCCCeEEEEeCCCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeec
Q 019290           99 LGIKFNPVTCDLYIADAYFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATG  177 (343)
Q Consensus        99 ~gi~~~~~~~~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~  177 (343)
                      .+++..+...++.++..++| +..+|.. ..-.++....+..  .-+.++-....+++.+++-+-               
T Consensus        64 fdV~Wse~~e~~~~~a~GDGSLrl~d~~-~~s~Pi~~~kEH~--~EV~Svdwn~~~r~~~ltsSW---------------  125 (311)
T KOG0277|consen   64 FDVAWSENHENQVIAASGDGSLRLFDLT-MPSKPIHKFKEHK--REVYSVDWNTVRRRIFLTSSW---------------  125 (311)
T ss_pred             eEeeecCCCcceEEEEecCceEEEeccC-CCCcchhHHHhhh--hheEEeccccccceeEEeecc---------------
Confidence            56666653334444435666 7777732 2222332111111  122333222222444443321               


Q ss_pred             CCCceEEEEeCCCC-ceEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCc
Q 019290          178 DRSGRLLKYDPLKK-NVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGE  233 (343)
Q Consensus       178 ~~~~~v~~~d~~~~-~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~  233 (343)
                        .+.|=.+++..+ .+.++...-......+++|.-..|+.+.+.++.+..||+..+
T Consensus       126 --D~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~  180 (311)
T KOG0277|consen  126 --DGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSP  180 (311)
T ss_pred             --CCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCC
Confidence              334444554422 233333322334556677766668888788888888987754

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=80.28  E-value=46  Score=30.25  Aligned_cols=50  Identities=8%  Similarity=0.028  Sum_probs=31.5

Q ss_pred             EEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEecc
Q 019290          214 FLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNS  266 (343)
Q Consensus       214 ~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~~  266 (343)
                      ....+.+.++.|..|++....-   .-.+.....-..++++.|.|++.++..+
T Consensus       305 ~~l~s~SrDktIk~wdv~tg~c---L~tL~ghdnwVr~~af~p~Gkyi~ScaD  354 (406)
T KOG0295|consen  305 QVLGSGSRDKTIKIWDVSTGMC---LFTLVGHDNWVRGVAFSPGGKYILSCAD  354 (406)
T ss_pred             cEEEeecccceEEEEeccCCeE---EEEEecccceeeeeEEcCCCeEEEEEec
Confidence            4455667788898899875211   0111112223667889999998888776

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=80.16  E-value=57  Score=31.25  Aligned_cols=156  Identities=16%  Similarity=0.086  Sum_probs=88.7

Q ss_pred             CCCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEe
Q 019290           35 VGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIAD  114 (343)
Q Consensus        35 ~~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~  114 (343)
                      ..+.++.+.++|.+|-+++.+|.+..||..+.+...-..                  ....  ..--++.. ...++...
T Consensus       218 ~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~------------------~~h~--~rvg~laW-~~~~lssG  276 (484)
T KOG0305|consen  218 ELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLR------------------GSHA--SRVGSLAW-NSSVLSSG  276 (484)
T ss_pred             CceEEEEECCCCCEEEEeecCCeEEEEehhhcccccccc------------------CCcC--ceeEEEec-cCceEEEe
Confidence            368899999999988899999999999976543221100                  0011  12223343 34444443


Q ss_pred             CCCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCc-
Q 019290          115 AYFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKN-  192 (343)
Q Consensus       115 ~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~-  192 (343)
                      ...+ |..+|....+.  ......+ ....+-++...+ |+....+-..                 .+.++.+|....+ 
T Consensus       277 sr~~~I~~~dvR~~~~--~~~~~~~-H~qeVCgLkws~-d~~~lASGgn-----------------DN~~~Iwd~~~~~p  335 (484)
T KOG0305|consen  277 SRDGKILNHDVRISQH--VVSTLQG-HRQEVCGLKWSP-DGNQLASGGN-----------------DNVVFIWDGLSPEP  335 (484)
T ss_pred             cCCCcEEEEEEecchh--hhhhhhc-ccceeeeeEECC-CCCeeccCCC-----------------ccceEeccCCCccc
Confidence            4444 77777654321  1111111 113466788888 5666553322                 4567778763332 


Q ss_pred             eEEeecCCCCcceeEEecCCCEEEEE--EcCCCeEEEEEccC
Q 019290          193 VTVMYNGLSFPNGVALSNNNSFLLLA--ESATLKILRFWLQG  232 (343)
Q Consensus       193 ~~~~~~~~~~~~~i~~~~d~~~lyv~--~~~~~~i~~~~~~~  232 (343)
                      ...+.........+++.|-...|..+  .+.+++|..|+..+
T Consensus       336 ~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~  377 (484)
T KOG0305|consen  336 KFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNT  377 (484)
T ss_pred             cEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCC
Confidence            23344444556778888876666665  33456777777654

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=80.10  E-value=31  Score=34.45  Aligned_cols=114  Identities=11%  Similarity=0.081  Sum_probs=69.8

Q ss_pred             eeeEEEeCCCCeEEEEeCCCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeee
Q 019290           98 PLGIKFNPVTCDLYIADAYFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIAT  176 (343)
Q Consensus        98 p~gi~~~~~~~~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~  176 (343)
                      .+.+.+++-.-++.++..++| |-.+|.+..+-+.....    .-..+.++++.|..+..|++...              
T Consensus       136 ~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~----nSESiRDV~fsp~~~~~F~s~~d--------------  197 (839)
T KOG0269|consen  136 ANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRS----NSESIRDVKFSPGYGNKFASIHD--------------  197 (839)
T ss_pred             eeeeeeccCCccEEEecCCCceEEEEeeecccccccccc----cchhhhceeeccCCCceEEEecC--------------
Confidence            466778775667888767788 66678865543332222    12468899998855666665543              


Q ss_pred             cCCCceEEEEeCCCCc-e-EEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCc
Q 019290          177 GDRSGRLLKYDPLKKN-V-TVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGE  233 (343)
Q Consensus       177 ~~~~~~v~~~d~~~~~-~-~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~  233 (343)
                         .|.|-.||..--. . ..+...-.....+.++|++. +..+...++.|.+|+..+.
T Consensus       198 ---sG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~-~lATGGRDK~vkiWd~t~~  252 (839)
T KOG0269|consen  198 ---SGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNRE-WLATGGRDKMVKIWDMTDS  252 (839)
T ss_pred             ---CceEEEeeccCchhHHHHhhcccCceEEEeecCCCc-eeeecCCCccEEEEeccCC
Confidence               5667778864211 1 11222223345567788654 5556667888999998754

>PRK13616 lipoprotein LpqB; Provisional

Probab=80.10  E-value=65  Score=31.90  Aligned_cols=196  Identities=11%  Similarity=0.024  Sum_probs=97.5

Q ss_pred             eeeEEEeCCCCeEEEEe-------C-CCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCccccccc
Q 019290           98 PLGIKFNPVTCDLYIAD-------A-YFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQ  169 (343)
Q Consensus        98 p~gi~~~~~~~~l~v~~-------~-~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~  169 (343)
                      +...+++++++.+.+..       . ...|+..+.. +..+.+..   +   .....-.+++..+.+|+......     
T Consensus       352 vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~---g---~~~t~PsWspDG~~lw~v~dg~~-----  419 (591)
T PRK13616        352 ITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLE---G---HSLTRPSWSLDADAVWVVVDGNT-----  419 (591)
T ss_pred             cccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccceeeec---C---CCCCCceECCCCCceEEEecCcc-----
Confidence            34566776444443332       1 1247777754 33343321   1   11344567772256887643210     


Q ss_pred             ceeeeeecCCCceEEEEeCCCCceEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEE---EEccC-ccccccceeeec-
Q 019290          170 YFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILR---FWLQG-ERTTYTPQLFAE-  244 (343)
Q Consensus       170 ~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~---~~~~~-~~~~~~~~~~~~-  244 (343)
                       ...+......+.++..+.++++...  .-...+..+.+++||..+.+..  .++|++   ...++ ...+.....+.. 
T Consensus       420 -~~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~--~g~v~Va~Vvr~~~G~~~l~~~~~l~~~  494 (591)
T PRK13616        420 -VVRVIRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII--GGKVYLAVVEQTEDGQYALTNPREVGPG  494 (591)
T ss_pred             -eEEEeccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE--CCEEEEEEEEeCCCCceeecccEEeecc
Confidence             0001111124567766666555443  1123478899999999887764  467887   33222 111122222222 


Q ss_pred             CCCCCCceeeCCCCCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECCCCCEEEEeeCCCCCccCCceeEEEe
Q 019290          245 MPRFPDNIKSDSKGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEGNTLNSVSEVQEY  324 (343)
Q Consensus       245 ~~~~p~~i~~d~~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~  324 (343)
                      ....+..+..-.++.|.++... .                      ...++.++.+|.....+  +.++....+..+...
T Consensus       495 l~~~~~~l~W~~~~~L~V~~~~-~----------------------~~~v~~v~vDG~~~~~~--~~~n~~~~v~~vaa~  549 (591)
T PRK13616        495 LGDTAVSLDWRTGDSLVVGRSD-P----------------------EHPVWYVNLDGSNSDAL--PSRNLSAPVVAVAAS  549 (591)
T ss_pred             cCCccccceEecCCEEEEEecC-C----------------------CCceEEEecCCcccccc--CCCCccCceEEEecC
Confidence            2222344555567778777553 2                      12567777777664432  223233344444444


Q ss_pred             CCEEEEecCCC
Q 019290          325 GEYLYTGSSVQ  335 (343)
Q Consensus       325 ~g~l~i~~~~~  335 (343)
                      .+.||+++.+.
T Consensus       550 ~~~iyv~~~~g  560 (591)
T PRK13616        550 PSTVYVTDARA  560 (591)
T ss_pred             CceEEEEcCCc
Confidence            56788876654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	343
2fp8_A	322	Structure Of Strictosidine Synthase, The Biosynthet		1e-43
2v91_A	302	Structure Of Strictosidine Synthase In Complex With		1e-43
2fpb_A	322	Structure Of Strictosidine Synthase, The Biosynthet		5e-42

>pdb|2FP8|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic Entry To The Monoterpenoid Indole Alkaloid Family Length = 322

Iteration: 1
 Score =  173 bits (439), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 96/297 (32%), Positives = 146/297 (49%), Gaps = 16/297 (5%)
Query: 36  GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLC 95
            P S  FD   +G Y  V DGR++K++  NSG+ +FA  +P+  +  C+ ST+    PLC
Sbjct: 20  APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLC 79
Query: 96  GRPLGIKFNPVTCDLYIADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGI 155
           GR   I +N     LYI D Y+ L VVG  GG A QLA+S  G+PF++   + +D  TGI
Sbjct: 80  GRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGI 139
Query: 156 VYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVXXXXXXXXX 215
           VYFTD S  +  R     + T D++GRL+KYDP  K  T++   L  P G          
Sbjct: 140 VYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFV 199
Query: 216 XXXXXXTLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNSARGKIESNK 275
                 + +I+++WL+G +   T ++  ++P  P NIK ++ G FW+   S+  +++ N 
Sbjct: 200 LVAEFLSHQIVKYWLEGPKKG-TAEVLVKIPN-PGNIKRNADGHFWV---SSSEELDGNM 254
Query: 276 KTAFCEETAKPWFLRDPVGVKFXXXXXXXXXXXXXXXXTLNSVSEVQEYGEYLYTGS 332
                          DP G+KF                      ++QE+   LY G+
Sbjct: 255 HGRV-----------DPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQEHDGLLYIGT 300

>pdb|2V91|A Chain A, Structure Of Strictosidine Synthase In Complex With Strictosidine Length = 302

Iteration: 1
 Score =  173 bits (438), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 96/297 (32%), Positives = 146/297 (49%), Gaps = 16/297 (5%)
Query: 36  GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLC 95
            P S  FD   +G Y  V DGR++K++  NSG+ +FA  +P+  +  C+ ST+    PLC
Sbjct: 11  APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLC 70
Query: 96  GRPLGIKFNPVTCDLYIADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGI 155
           GR   I +N     LYI D Y+ L VVG  GG A QLA+S  G+PF++   + +D  TGI
Sbjct: 71  GRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGI 130
Query: 156 VYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVXXXXXXXXX 215
           VYFTD S  +  R     + T D++GRL+KYDP  K  T++   L  P G          
Sbjct: 131 VYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFV 190
Query: 216 XXXXXXTLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNSARGKIESNK 275
                 + +I+++WL+G +   T ++  ++P  P NIK ++ G FW+   S+  +++ N 
Sbjct: 191 LVAEFLSHQIVKYWLEGPKKG-TAEVLVKIPN-PGNIKRNADGHFWV---SSSEELDGNM 245
Query: 276 KTAFCEETAKPWFLRDPVGVKFXXXXXXXXXXXXXXXXTLNSVSEVQEYGEYLYTGS 332
                          DP G+KF                      ++QE+   LY G+
Sbjct: 246 HGRV-----------DPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQEHDGLLYIGT 291

>pdb|2FPB|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic Entry To The Monoterpenoid Indole Alkaloid Family Length = 322

Iteration: 1
 Score =  168 bits (425), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 95/297 (31%), Positives = 142/297 (47%), Gaps = 16/297 (5%)
Query: 36  GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLC 95
            P S  FD   +G Y  V DGR+ K++  NSG+ +FA  +P+  +  C+ ST+    PLC
Sbjct: 20  APNSFTFDSTNKGFYTSVQDGRVXKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLC 79
Query: 96  GRPLGIKFNPVTCDLYIADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGI 155
           GR   I +N      YI D Y+ L VVG  GG A QLA+S  G+PF++   + +D  TGI
Sbjct: 80  GRTYDISYNLQNNQXYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGI 139
Query: 156 VYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVXXXXXXXXX 215
           VYFTD S  +  R       T D++GRL KYDP  K  T++   L  P G          
Sbjct: 140 VYFTDVSTLYDDRGVQQIXDTSDKTGRLXKYDPSTKETTLLXKELHVPGGAEVSADSSFV 199
Query: 216 XXXXXXTLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNSARGKIESNK 275
                 + +I+++WL+G +   T ++  ++P  P NIK ++ G FW+   S+  +++ N 
Sbjct: 200 LVAEFLSHQIVKYWLEGPKKG-TAEVLVKIPN-PGNIKRNADGHFWV---SSSEELDGNX 254
Query: 276 KTAFCEETAKPWFLRDPVGVKFXXXXXXXXXXXXXXXXTLNSVSEVQEYGEYLYTGS 332
                          DP G+KF                      ++QE+   LY G+
Sbjct: 255 HGRV-----------DPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQEHDGLLYIGT 300

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	343
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	1e-99
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	2e-33
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	2e-24
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	5e-19
2p4o_A	306	Hypothetical protein; putative lactonase, structur	3e-17
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	8e-17
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	4e-14
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	2e-10
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	3e-09
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	3e-09
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	4e-07
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	2e-06
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	5e-06
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	8e-06
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	9e-05
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	3e-04
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	4e-04

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* Length = 322

 Score =  296 bits (758), Expect = 1e-99
 Identities = 108/323 (33%), Positives = 171/323 (52%), Gaps = 17/323 (5%)

Query: 21  LSSKSYQQLQLPG-VVGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRA 79
           LSS   +++ +      P S  FD   +G Y  V DGR++K++  NSG+ +FA  +P+  
Sbjct: 4   LSSPILKEILIEAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWN 63

Query: 80  REICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFGLMVVGPNGGQAQQLASSAGGI 139
           +  C+ ST+    PLCGR   I +N     LYI D Y+ L VVG  GG A QLA+S  G+
Sbjct: 64  KAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGV 123

Query: 140 PFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNG 199
           PF++   + +D  TGIVYFTD S  +  R     + T D++GRL+KYDP  K  T++   
Sbjct: 124 PFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKE 183

Query: 200 LSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGE 259
           L  P G  +S ++SF+L+AE  + +I+++WL+G +   T ++  ++P  P NIK ++ G 
Sbjct: 184 LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKG-TAEVLVKIP-NPGNIKRNADGH 241

Query: 260 FWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEGNTLNSVS 319
           FW++ +                         DP G+KFD  GN+++V+            
Sbjct: 242 FWVSSSEEL--------------DGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFE 287

Query: 320 EVQEYGEYLYTGSSVQPYVVVIK 342
           ++QE+   LY G+     V ++ 
Sbjct: 288 QIQEHDGLLYIGTLFHGSVGILV 310

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... Length = 314

 Score =  124 bits (313), Expect = 2e-33
 Identities = 46/252 (18%), Positives = 87/252 (34%), Gaps = 34/252 (13%)

Query: 33  GVVGPESLAFDCNG-------EGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDG 85
            + G E   FD NG       E    G   G IL+        T       +        
Sbjct: 16  DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVN-------- 67

Query: 86  STNTTLEPLCGRPLGIKFNPVTCDLYIADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTN 145
                     G P G + +     L++AD   GL+VV  +G   +     + G   +  N
Sbjct: 68  -------GYGGIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCN 120

Query: 146 DLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSFPNG 205
           D   D   G ++ T  +   +      + +  ++ G +  +      +  +     FPNG
Sbjct: 121 DCAFDYE-GNLWITAPA--GEVAPADYTRSMQEKFGSIYCFTT-DGQMIQVDTAFQFPNG 176

Query: 206 VALSNNNS----FLLLAESATLKILRFWLQGERTTYTPQLFAEMPR----FPDNIKSDSK 257
           +A+ + N      L++AE+ T K+  + ++G       +++  +P       D +  D  
Sbjct: 177 IAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDED 236

Query: 258 GEFWIAMNSARG 269
               +A   +  
Sbjct: 237 NNLLVANWGSSH 248

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* Length = 355

 Score =  101 bits (252), Expect = 2e-24
 Identities = 48/270 (17%), Positives = 77/270 (28%), Gaps = 26/270 (9%)

Query: 85  GSTNTTLEPLCGRPLGIKFNPVTCDLYI-ADAYFGLMVV-------------GPNGGQAQ 130
               + LE +        FNP     +I  D    L+VV                  ++ 
Sbjct: 94  EPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSL 153

Query: 131 QLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLK 190
               +         ND+         Y T+   +         +  G     +  Y P  
Sbjct: 154 LHLKTIRHKLLPSVNDIVAVGP-EHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP-- 210

Query: 191 KNVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPD 250
            +V V+  G  F NG+ +S +  ++ +AE    KI  +       T TP          D
Sbjct: 211 NDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANW-TLTPLRVLSFDTLVD 269

Query: 251 NIKSDS-KGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDG 309
           NI  D   G+ W+  +    +I         E       LR  +         V  V   
Sbjct: 270 NISVDPVTGDLWVGCHPNGMRIFFYD----AENPPGSEVLR--IQDILSEEPKVTVVYA- 322

Query: 310 NEGNTLNSVSEVQEYGEYLYTGSSVQPYVV 339
             G  L   +    Y   L  G+     + 
Sbjct: 323 ENGTVLQGSTVAAVYKGKLLIGTVFHKALY 352

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A Length = 333

 Score = 85.6 bits (212), Expect = 5e-19
 Identities = 41/231 (17%), Positives = 70/231 (30%), Gaps = 33/231 (14%)

Query: 46  GEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNP 105
            EG       G++           +       +            +      P  IK + 
Sbjct: 47  LEGLNF-DRQGQLF--------LLDVFEGNIFKINPETKEIKRPFVSH-KANPAAIKIHK 96

Query: 106 ----VTCDLYIADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDS 161
                 C L    +  G+     NG   Q +            +D+  D   G  YFTD 
Sbjct: 97  DGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLS--TAYCIDDMVFDSK-GGFYFTD- 152

Query: 162 SIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESA 221
                         + +  G +    P  + VT +   +S  NG+ALS +   L + E+ 
Sbjct: 153 ----------FRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETT 202

Query: 222 TLKILRFWLQGERTTYTPQ---LFAEM--PRFPDNIKSDSKGEFWIAMNSA 267
             ++ R  L+ +  T  P    +         PD+   DS    ++AM   
Sbjct: 203 ANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQ 253

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 Length = 306

 Score = 80.0 bits (197), Expect = 3e-17
 Identities = 38/241 (15%), Positives = 67/241 (27%), Gaps = 38/241 (15%)

Query: 30  QLPGVVGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNT 89
             P     E+LA   +G         G I+     +      AT                
Sbjct: 27  SFPVNTFLENLASAPDGTIFVTNHEVGEIVSI-TPDGNQQIHATVE-------------- 71

Query: 90  TLEPLCGRPLGIKFNPVTCDLYIADAYFG---LMVVGPNGGQAQQLASSAGGIPFRFTND 146
                 G+  G+ F     DL           ++ +  + G  + L +        F N 
Sbjct: 72  ------GKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDA---IFLNG 121

Query: 147 LDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSFPNGV 206
           +    +       DS            I     SG +    P+            FP   
Sbjct: 122 ITPLSD-TQYLTADSYRGAIWL-----IDVVQPSGSIWLEHPMLARSNSE---SVFPAAN 172

Query: 207 ALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNS 266
            L    +FL ++ +  + +LR  +        P++F E     D+   D +G  + A + 
Sbjct: 173 GLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHI 231

Query: 267 A 267
            
Sbjct: 232 Y 232

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} Length = 296

 Score = 78.6 bits (194), Expect = 8e-17
 Identities = 43/235 (18%), Positives = 75/235 (31%), Gaps = 43/235 (18%)

Query: 46  GEGP-------YVGVSD---GRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLC 95
            EGP        V  SD    R   W                      DG  +  + P  
Sbjct: 30  TEGPVYVPARSAVIFSDVRQNRTWAWSD--------------------DGQLSPEMHP-S 68

Query: 96  GRPLGIKFNP----VTCDLYIADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDP 151
               G   N     + C          L      GG+ + +A S  G      ND+ + P
Sbjct: 69  HHQNGHCLNKQGHLIACS----HGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAP 124

Query: 152 NTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVALSNN 211
           + G ++F+D + Y   +         +  GR +        ++        PNG+A   +
Sbjct: 125 D-GSLWFSDPT-YGIDKPEEGYGGEMELPGRWVFRLAPDGTLSAPIRDRVKPNGLAFLPS 182

Query: 212 NSFLLLAESATLKILRFWLQGERTTYTPQLFAEM-PRFPDNIKSDSKGEFWIAMN 265
            + LL++++      R+ L     T    +   + P   D ++ D+ G  W +  
Sbjct: 183 GN-LLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASAG 236

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} Length = 305

 Score = 70.9 bits (174), Expect = 4e-14
 Identities = 38/227 (16%), Positives = 71/227 (31%), Gaps = 19/227 (8%)

Query: 46  GEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNP 105
            EGP    +   ++        W++         RE  DG+ +  L+       G   + 
Sbjct: 47  SEGPAWWEAQRTLV--------WSDLVGRRVLGWRE--DGTVDVLLDA-TAFTNGNAVDA 95

Query: 106 VTCDLYIADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYF 165
               L   +     +      GQA  L     G      NDL +  + G ++FTD     
Sbjct: 96  -QQRLVHCEHGRRAITRSDADGQAHLLVGRYAGKRLNSPNDLIVARD-GAIWFTDPPFGL 153

Query: 166 QRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESATLKI 225
           ++               + +  P   +       L  PNG+A S +   L ++++     
Sbjct: 154 RKPSQGCPADPELAHHSVYRLPP-DGSPLQRMADLDHPNGLAFSPDEQTLYVSQTPEQGH 212

Query: 226 LRFWLQ----GERTTYTPQLFAEM-PRFPDNIKSDSKGEFWIAMNSA 267
               +      +   +  + FA +    PD    D  G  W +  + 
Sbjct: 213 GSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSSGTG 259

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300

 Score = 60.0 bits (146), Expect = 2e-10
 Identities = 37/251 (14%), Positives = 72/251 (28%), Gaps = 36/251 (14%)

Query: 95  CGRPLGIKFNPVTCD--LYIADAYFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDP 151
              P GI  +    D  ++        +  +  +G   +    +           L +  
Sbjct: 19  DSGPYGITSSE---DGKVWFTQHKANKISSLDQSGRIKEFEVPTPDAKV----MCLIVSS 71

Query: 152 NTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTV-MYNGLSFPNGVALSN 210
             G ++FT++                  + ++ K           +    S P G+    
Sbjct: 72  L-GDIWFTENG-----------------ANKIGKLSKKGGFTEYPLPQPDSGPYGITEGL 113

Query: 211 NNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNSARGK 270
           N   +   +    +I +    G    Y        P F   I   S    W    +    
Sbjct: 114 NGD-IWFTQLNGDRIGKLTADGTIYEYDLPNKGSYPAF---ITLGSDNALWFT-ENQNNS 168

Query: 271 IESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEGNTLNSVSEVQEYGEYLYT 330
           I     T   EE   P     PVG+    +G +   ++   GN +  ++   E  EY   
Sbjct: 169 IGRITNTGKLEEYPLPTNAAAPVGITSGNDGALW-FVEIM-GNKIGRITTTGEISEYDIP 226

Query: 331 GSSVQPYVVVI 341
             + +P+ +  
Sbjct: 227 TPNARPHAITA 237

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300

 Score = 56.2 bits (136), Expect = 3e-09
 Identities = 32/244 (13%), Positives = 61/244 (25%), Gaps = 52/244 (21%)

Query: 36  GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREI-CDGSTNTTLEPL 94
           GP  +              +G I            F      R  ++  DG+      P 
Sbjct: 105 GPYGITEG----------LNGDIW-----------FTQLNGDRIGKLTADGTIYEYDLPN 143

Query: 95  CG-RPLGIKFNPVTCDLYIADAYFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPN 152
            G  P  I        L+  +     +  +   G    +L              +    +
Sbjct: 144 KGSYPAFITLGSDN-ALWFTENQNNSIGRITNTG----KLEEYPLPTNAAAPVGITSGND 198

Query: 153 TGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTV-MYNGLSFPNGVALSNN 211
            G ++F +                     ++ +     +     +    + P+ +    N
Sbjct: 199 -GALWFVEIM-----------------GNKIGRITTTGEISEYDIPTPNARPHAITAGKN 240

Query: 212 NSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNSARGKI 271
           +  +   E    +I R         Y  Q     P     I     G  W A+    GK+
Sbjct: 241 SE-IWFTEWGANQIGRITNDNTIQEYQLQTENAEPH---GITFGKDGSVWFALKCKIGKL 296

Query: 272 ESNK 275
             N+
Sbjct: 297 NLNE 300

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299

 Score = 56.6 bits (137), Expect = 3e-09
 Identities = 33/215 (15%), Positives = 60/215 (27%), Gaps = 38/215 (17%)

Query: 95  CGRPLGIKFNPVTCD--LYIADAYFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDP 151
              P GI  +       ++I       +  +  +G   +    +           L I  
Sbjct: 14  DTGPYGITVSD---KGKVWITQHKANMISCINLDGKITEYPLPTPDAKV----MCLTISS 66

Query: 152 NTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTV-MYNGLSFPNGVALSN 210
           + G V+FT++                  + ++ +           + N  S P G+    
Sbjct: 67  D-GEVWFTEN-----------------AANKIGRITKKGIIKEYTLPNPDSAPYGITEGP 108

Query: 211 NNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNSAR-- 268
           N   +   E    +I R    G+   Y          +P  I   S    W   N     
Sbjct: 109 NGD-IWFTEMNGNRIGRITDDGKIREYE---LPNKGSYPSFITLGSDNALWFTENQNNAI 164

Query: 269 GKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNV 303
           G+I  +       E   P     PVG+    +  +
Sbjct: 165 GRITESGDI---TEFKIPTPASGPVGITKGNDDAL 196

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Length = 270

 Score = 49.6 bits (119), Expect = 4e-07
 Identities = 50/260 (19%), Positives = 96/260 (36%), Gaps = 42/260 (16%)

Query: 77  HRAREICDGSTNTTLEPLCG--RPLGIKFNPVTCDLYIADAYFGLMVVGPNGGQAQQLAS 134
            R  ++  GST TT+ P  G  +P G+  +     +Y+ D    ++ +         L  
Sbjct: 46  GRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDFNNRVVTLAAGSNNQTVLPF 104

Query: 135 SAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVT 194
                P      L +D   G VY  D                   + R++K     K  T
Sbjct: 105 DGLNYPE----GLAVDTQ-GAVYVADRG-----------------NNRVVKLAAGSKTQT 142

Query: 195 VM-YNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIK 253
           V+ + GL+ P+GVA+ N+ + + + ++   ++++   +       P  F ++   P  I 
Sbjct: 143 VLPFTGLNDPDGVAVDNSGN-VYVTDTDNNRVVKLEAESNNQVVLP--FTDI-TAPWGIA 198

Query: 254 SDSKGEFWIA--MNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLD-GN 310
            D  G  ++     +   K+ +   T+          L  P+ V  D +  V  V D GN
Sbjct: 199 VDEAGTVYVTEHNTNQVVKLLAGSTTST---VLPFTGLNTPLAVAVDSDRTVY-VADRGN 254

Query: 311 EGNTLNSVSEVQEYGEYLYT 330
                + V ++     + + 
Sbjct: 255 -----DRVVKLTSLEHHHHH 269

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Length = 267

 Score = 47.9 bits (114), Expect = 2e-06
 Identities = 42/234 (17%), Positives = 75/234 (32%), Gaps = 44/234 (18%)

Query: 6   SFIIF-----IFPLVFPCVILSSKSYQQLQLPGVVGPESLAFDCNGEGPYVGVSDGRILK 60
           + ++F     I  L      +     +            LAFDC          D  +  
Sbjct: 2   THLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCV---------DKVVY- 51

Query: 61  WKAANSGWTEFATTAPHRAREICDGSTNTTL-EPLCGRPLGIKFNPVTCDLYIADAYFG- 118
                  WT+ +  +  RA     G   TT+     G P GI  + +   ++  D+    
Sbjct: 52  -------WTDISEPSIGRAS--LHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDR 102

Query: 119 LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGD 178
           + V   +G Q + L  +    P      +  DP  G +Y+TD +    R    +  +  D
Sbjct: 103 IEVAKMDGTQRRVLFDTGLVNPR----GIVTDPVRGNLYWTDWN----RDNPKIETSHMD 154

Query: 179 RSGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQG 232
            + R            +  + L  PNG+     +S L   ++ T +        
Sbjct: 155 GTNR----------RILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQ 198

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} Length = 349

 Score = 46.8 bits (110), Expect = 5e-06
 Identities = 38/234 (16%), Positives = 71/234 (30%), Gaps = 27/234 (11%)

Query: 42  FDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGI 101
           F C  E  Y    D R    KA                + +   S  T L       + +
Sbjct: 21  FQCWCEAGYELRPDRR--SCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIAL 78

Query: 102 KFNPVTCDLYIAD-AYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTD 160
            F+     ++ +D     ++    NG   +++ S+    P      L +D     +Y+TD
Sbjct: 79  DFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESP----GGLAVDWVHDKLYWTD 134

Query: 161 SSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAE- 219
           S            I   +  G   K         +++  L  P  +AL      +   + 
Sbjct: 135 SG--------TSRIEVANLDGAHRK--------VLLWQSLEKPRAIALHPMEGTIYWTDW 178

Query: 220 SATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNSARGKIES 273
             T +I    + G        +      +P+ +  D  G     +++    IE 
Sbjct: 179 GNTPRIEASSMDGSGRRI---IADTHLFWPNGLTIDYAGRRMYWVDAKHHVIER 229

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619

 Score = 46.7 bits (110), Expect = 8e-06
 Identities = 36/271 (13%), Positives = 79/271 (29%), Gaps = 29/271 (10%)

Query: 34  VVGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEP 93
           ++ P    + C        + +G+  K  A         T     + +  D +       
Sbjct: 287 LMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIVLQLE 346

Query: 94  LCGRPLGIKFNPVTCDLYIADAYFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPN 152
                + I ++PV   +Y  D     +     +G  +Q + ++    P      + +D  
Sbjct: 347 DIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPD----GIAVDWV 402

Query: 153 TGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNN 212
              +Y+TD+          + +   + + R            ++   L  P  + L    
Sbjct: 403 ARNLYWTDTG------TDRIEVTRLNGTMR----------KILISEDLEEPRAIVLDPMV 446

Query: 213 SFLLLAES-ATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGE--FWIAMNSARG 269
            ++   +     KI R  L G   +    L      +P+ +  D      +W   ++   
Sbjct: 447 GYMYWTDWGEIPKIERAALDG---SDRVVLVNTSLGWPNGLALDYDEGKIYWG--DAKTD 501

Query: 270 KIESNKKTAFCEETAKPWFLRDPVGVKFDVN 300
           KIE                +    G     +
Sbjct: 502 KIEVMNTDGTGRRVLVEDKIPHIFGFTLLGD 532

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B Length = 318

 Score = 42.8 bits (100), Expect = 9e-05
 Identities = 36/168 (21%), Positives = 60/168 (35%), Gaps = 35/168 (20%)

Query: 23  SKSYQQLQLPGVVGPESLAFD--------CNGEGPYVGVS--DGRILK------------ 60
           ++S Q + + G++ P+ LA D         + E   + VS  DG + K            
Sbjct: 67  TESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRA 126

Query: 61  ----WKAANSGWTEFATTAPHRAREICDGSTNTTL-EPLCGRPLGIKFNPVTCDLYIADA 115
                 +    WT++    P   R   DGS+   +       P G+  +     LY ADA
Sbjct: 127 IALDPSSGFMYWTDWGEV-PKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADA 185

Query: 116 YFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSS 162
               +     +G   Q +   +   PF       +     I+Y+TD S
Sbjct: 186 KLNFIHKSNLDGTNRQAVVKGSLPHPF------ALTLFEDILYWTDWS 227

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} Length = 430

 Score = 41.6 bits (97), Expect = 3e-04
 Identities = 26/211 (12%), Positives = 53/211 (25%), Gaps = 43/211 (20%)

Query: 33  GVVGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTN--TT 90
           G  G   L+FD         V +                     H  R I D      +T
Sbjct: 135 GFGGAVWLSFDPKNHNHLYLVGEQ--------------------HPTRLI-DFEKEYVST 173

Query: 91  LEPLCGRPLGIKFNPVTCDLYIADAYFGLM-VVGPNGGQAQQLASSAGGIPFRFTNDLDI 149
           +     +   I +      + I +              +             +  N  + 
Sbjct: 174 VYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFKVITELTKGQNCNGAET 233

Query: 150 DPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMY--NGLSFPNGVA 207
            P  G +YF   +                 +G++ +YD   +  T ++      +   + 
Sbjct: 234 HPINGELYFNSWN-----------------AGQVFRYDFTTQETTPLFTIQDSGWEFHIQ 276

Query: 208 LSNNNSFLLLAESATLKILRFWLQGERTTYT 238
              + ++  +       ILR     +    T
Sbjct: 277 FHPSGNYAYIVVVNQHYILRSDYDWKTKRLT 307

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 Length = 316

 Score = 40.8 bits (95), Expect = 4e-04
 Identities = 33/213 (15%), Positives = 78/213 (36%), Gaps = 27/213 (12%)

Query: 110 LYIADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQ 169
           L+  + +  +  +  +  +   L  +   +       LD +  +  +Y++D S       
Sbjct: 4   LFFTNRH-EVRKMTLDRSEYTSLIPNLRNV-----VALDTEVASNRIYWSDLS------- 50

Query: 170 YFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFW 229
                     S +L +   +    TV+   +  P+G+A+   +S +   +S    +    
Sbjct: 51  -----QRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVAD 105

Query: 230 LQG-ERTTYTPQLFAEMPRFPDNIKSDSKGE--FWIAMNSARGKIESNKKTAFCEETAKP 286
            +G +R T    LF E    P  I  D      +W    +   KI+          +   
Sbjct: 106 TKGVKRKT----LFRENGSKPRAIVVDPVHGFMYWTDWGT-PAKIKKGGLNGVDIYSLVT 160

Query: 287 WFLRDPVGVKFDVNGNVVDVLDGNEGNTLNSVS 319
             ++ P G+  D+    +  +D ++ ++++S+ 
Sbjct: 161 ENIQWPNGITLDLLSGRLYWVD-SKLHSISSID 192

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	343
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	100.0
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	99.94
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.94
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.93
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.93
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.92
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.89
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.89
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.88
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.88
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.88
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.87
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.86
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.86
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.86
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	99.86
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.85
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	99.84
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.83
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	99.82
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.82
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	99.82
3v65_B	386	Low-density lipoprotein receptor-related protein;	99.82
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.81
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	99.81
3v65_B	386	Low-density lipoprotein receptor-related protein;	99.8
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	99.8
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	99.8
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.79
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	99.78
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.78
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	99.77
3v9f_A	781	Two-component system sensor histidine kinase/RESP	99.77
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.77
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.77
3kya_A	496	Putative phosphatase; structural genomics, joint c	99.77
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.76
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.76
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	99.75
3v9f_A	781	Two-component system sensor histidine kinase/RESP	99.75
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	99.75
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	99.73
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	99.73
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	99.73
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	99.72
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	99.72
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	99.7
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.7
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.68
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	99.68
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.67
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	99.67
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	99.67
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.65
3ott_A	758	Two-component system sensor histidine kinase; beta	99.64
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.63
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.62
3ott_A	758	Two-component system sensor histidine kinase; beta	99.61
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.61
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.6
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.6
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	99.58
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.58
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.58
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.56
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.56
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.55
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	99.55
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	99.54
3kya_A	496	Putative phosphatase; structural genomics, joint c	99.54
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	99.54
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.52
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.52
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.51
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.5
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	99.5
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.47
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	99.47
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.47
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.47
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.47
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.44
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.44
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.43
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.41
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.4
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.39
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.38
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.37
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.36
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.35
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.34
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.34
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.33
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.28
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	99.28
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.28
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.27
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	99.27
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.26
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	99.25
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	99.24
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.24
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.23
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	99.2
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	99.2
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.19
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.19
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.18
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.17
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.17
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.16
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.16
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.14
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.14
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.13
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.13
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.12
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	99.1
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.1
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.09
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.09
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.08
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.08
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.07
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.05
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.05
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	99.04
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.03
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	98.99
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	98.99
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.99
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.99
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	98.97
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	98.97
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	98.96
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	98.96
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	98.96
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	98.95
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	98.95
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.95
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	98.94
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	98.93
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	98.93
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.92
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	98.92
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	98.91
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	98.91
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	98.9
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	98.9
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.9
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	98.89
3ow8_A	321	WD repeat-containing protein 61; structural genomi	98.89
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	98.89
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	98.87
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	98.87
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	98.86
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	98.86
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	98.86
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.84
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	98.84
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	98.84
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.83
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	98.82
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	98.82
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	98.82
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	98.82
3jrp_A	379	Fusion protein of protein transport protein SEC13	98.81
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	98.81
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	98.81
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	98.81
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	98.81
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	98.8
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	98.8
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	98.78
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	98.78
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	98.77
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.76
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	98.75
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	98.75
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	98.73
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.73
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	98.73
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	98.73
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	98.72
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	98.72
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	98.72
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	98.71
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	98.71
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	98.71
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	98.7
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	98.69
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	98.69
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	98.68
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	98.67
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	98.66
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	98.66
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	98.66
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	98.65
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	98.65
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	98.65
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	98.65
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	98.65
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	98.64
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	98.63
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	98.6
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	98.59
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	98.58
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	98.57
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	98.56
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	98.55
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	98.55
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	98.55
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	98.55
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	98.54
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.53
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	98.53
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	98.52
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	98.52
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	98.52
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	98.51
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	98.51
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	98.51
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.48
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	98.47
3jro_A	753	Fusion protein of protein transport protein SEC13	98.46
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	98.45
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	98.44
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	98.43
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	98.41
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	98.41
2pm7_B	297	Protein transport protein SEC13, protein transport	98.41
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	98.4
1k32_A	1045	Tricorn protease; protein degradation, substrate g	98.4
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	98.4
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	98.4
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	98.39
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	98.38
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	98.38
3jrp_A	379	Fusion protein of protein transport protein SEC13	98.38
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	98.38
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	98.38
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	98.37
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	98.36
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	98.34
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	98.33
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	98.32
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	98.26
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	98.25
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	98.25
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	98.24
1k32_A	1045	Tricorn protease; protein degradation, substrate g	98.23
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.21
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	98.21
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	98.21
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	98.21
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	98.2
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	98.2
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	98.2
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	98.2
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.17
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	98.16
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	98.15
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	98.14
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.12
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	98.12
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	98.09
3jro_A	753	Fusion protein of protein transport protein SEC13	98.09
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	98.09
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	98.07
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	98.06
2pm7_B	297	Protein transport protein SEC13, protein transport	98.05
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	98.0
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	97.99
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.98
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	97.97
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.9
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.88
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	97.84
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.83
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	97.82
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	97.82
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.81
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	97.77
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	97.77
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.77
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	97.76
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	97.76
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	97.76
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	97.76
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.76
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	97.73
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.7
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	97.69
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.69
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.69
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	97.65
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.62
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	97.6
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.59
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.58
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	97.57
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	97.54
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.53
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	97.53
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	97.51
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	97.47
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.39
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	97.36
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.35
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	97.33
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	97.22
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.19
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	97.19
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	97.18
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	97.18
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.14
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	97.1
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.05
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.02
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	96.98
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	96.93
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	96.91
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	96.83
2cn3_A	737	Xyloglucanase, beta-1,4-xyloglucan hydrolase; glyc	96.82
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.81
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	96.66
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	96.56
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	96.47
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	96.2
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	96.19
1sqj_A	789	OXG-RCBH, oligoxyloglucan reducing-END-specific ce	96.19
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	96.14
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	96.07
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	95.98
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	95.96
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	95.67
3a0f_A	763	Xyloglucanase; beta-propeller, hydrolase; 2.50A {G	95.11
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	94.19
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	94.01
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	93.74
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	93.46
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	92.28
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	92.09
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	91.45
2cn3_A	737	Xyloglucanase, beta-1,4-xyloglucan hydrolase; glyc	87.04
3a0f_A	763	Xyloglucanase; beta-propeller, hydrolase; 2.50A {G	82.0
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	81.72
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	81.05

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=100.00  E-value=1.3e-31  Score=241.08  Aligned_cols=305  Identities=35%  Similarity=0.660  Sum_probs=216.4

Q ss_pred             CccccccccCC-CCCCCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeee
Q 019290           22 SSKSYQQLQLP-GVVGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLG  100 (343)
Q Consensus        22 ~~~~~~~~~~~-~~~~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g  100 (343)
                      +...++.+++| ++..|+++++|++|+++|++..+++|++|++.++.+..+...........|.+............|.+
T Consensus         5 ~~~~~~~i~~~g~~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~g   84 (322)
T 2fp8_A            5 SSPILKEILIEAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYD   84 (322)
T ss_dssp             -----CEEEEECSSSCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEE
T ss_pred             cCCccceeecCCccCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCce
Confidence            44456778888 57889999999999989999999999999998877777653221111011111100011122356899


Q ss_pred             EEEeCCCCeEEEEeCCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeC-CCCeEEEEeCCcccccccceeeeeecCC
Q 019290          101 IKFNPVTCDLYIADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDP-NTGIVYFTDSSIYFQRRQYFMSIATGDR  179 (343)
Q Consensus       101 i~~~~~~~~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~-~dg~l~v~~~~~~~~~~~~~~~~~~~~~  179 (343)
                      +++++++++|||++...+++++|+++++++.+.....+.+...++++++|+ + |++|+++....+...++...+.+...
T Consensus        85 i~~~~~~g~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~-G~l~v~d~~~~~~~~~~~~~~~~~~~  163 (322)
T 2fp8_A           85 ISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRT-GIVYFTDVSTLYDDRGVQQIMDTSDK  163 (322)
T ss_dssp             EEEETTTTEEEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTT-CCEEEEESCSSCCTTCHHHHHHHTCC
T ss_pred             EEEcCCCCcEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCC-CEEEEECCcccccccccceehcccCC
Confidence            999964789999988888999999887766654433334456789999998 6 99999987532222111111112233


Q ss_pred             CceEEEEeCCCCceEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCC
Q 019290          180 SGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGE  259 (343)
Q Consensus       180 ~~~v~~~d~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~  259 (343)
                      .++|+++|+++++.+.+...+..|++++++++++.||++++..++|++|++++... +..+.+...++ |+++++|++|+
T Consensus       164 ~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~-~~~~~~~~~~g-P~gi~~d~~G~  241 (322)
T 2fp8_A          164 TGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKK-GTAEVLVKIPN-PGNIKRNADGH  241 (322)
T ss_dssp             CEEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTT-TCEEEEEECSS-EEEEEECTTSC
T ss_pred             CceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcC-CccceEEeCCC-CCCeEECCCCC
Confidence            57899999988887766666788999999999999999999889999999886432 34445544556 99999999999


Q ss_pred             EEEEeccCCCccccccccccccccCCCcccCCCeEEEECCCCCEEEEeeCCCCCccCCceeEEEeCCEEEEecCCCCeEE
Q 019290          260 FWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEGNTLNSVSEVQEYGEYLYTGSSVQPYVV  339 (343)
Q Consensus       260 lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~~~~i~  339 (343)
                      ||++++..+..+              |.....+.|+++|++|+.+..+..+++.....++.+...+++|||++...++|.
T Consensus       242 l~va~~~~~~~~--------------~~~~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~  307 (322)
T 2fp8_A          242 FWVSSSEELDGN--------------MHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQEHDGLLYIGTLFHGSVG  307 (322)
T ss_dssp             EEEEEEEETTSS--------------TTSCEEEEEEEECTTSCEEEEEECCTTTTTSCCCEEEEETTEEEEECSSCSEEE
T ss_pred             EEEEecCccccc--------------ccCCCccEEEEECCCCCEEEEEECCCCCccccceEEEEeCCEEEEeecCCCceE
Confidence            999986521110              000012478999999999988887776445667777778999999999999999


Q ss_pred             EEcC
Q 019290          340 VIKA  343 (343)
Q Consensus       340 ~~~~  343 (343)
                      +|++
T Consensus       308 ~~~~  311 (322)
T 2fp8_A          308 ILVY  311 (322)
T ss_dssp             EEEC
T ss_pred             EEec
Confidence            9974

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=99.94  E-value=1.4e-24  Score=195.73  Aligned_cols=283  Identities=17%  Similarity=0.200  Sum_probs=194.8

Q ss_pred             ccCCC-CCCCceEEEcCCCCeeEEEe-------------cCCEEEEEEcCC--CCeEEeeecCCCccccccCCCCCcccC
Q 019290           29 LQLPG-VVGPESLAFDCNGEGPYVGV-------------SDGRILKWKAAN--SGWTEFATTAPHRAREICDGSTNTTLE   92 (343)
Q Consensus        29 ~~~~~-~~~p~~l~~d~~g~~l~~~~-------------~~g~i~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (343)
                      ..+++ ...||+|+++++|. +|++.             ..|+|+++|+++  .+..++......             ..
T Consensus        43 ~~i~~~~~G~EDi~~~~~G~-~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~-------------~~  108 (355)
T 3sre_A           43 NLVKGIDNGSEDLEILPNGL-AFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNT-------------LD  108 (355)
T ss_dssp             EECTTCCSCCCEEEECTTSE-EEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSS-------------CC
T ss_pred             EEeCCCCCCcceeEEcCCCe-EEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCC-------------CC
Confidence            33455 35799999999987 67664             688999999874  344444321100             01


Q ss_pred             CCcCCeeeEEEeCC-CC--eEEEEeCCC-----eEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcc
Q 019290           93 PLCGRPLGIKFNPV-TC--DLYIADAYF-----GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIY  164 (343)
Q Consensus        93 ~~~~~p~gi~~~~~-~~--~l~v~~~~~-----gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~  164 (343)
                      ....+|+||.+..+ ++  +||++++..     ++++++++++....+ ....+.+++.+|++++++ +|++|+++....
T Consensus       109 ~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~-~~~~g~~~~~pND~~v~~-~G~fyvt~~~~f  186 (355)
T 3sre_A          109 ISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHL-KTIRHKLLPSVNDIVAVG-PEHFYATNDHYF  186 (355)
T ss_dssp             GGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEE-EEECCTTCSSEEEEEEEE-TTEEEEEESCSC
T ss_pred             cCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEE-eccccCCCCCCceEEEeC-CCCEEecCCcEe
Confidence            23457999998652 23  699997653     388899886655443 444556788999999999 599999987521


Q ss_pred             cccccceeeeeecCCCceEEEEeCCCCceEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeec
Q 019290          165 FQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAE  244 (343)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~  244 (343)
                      -...........+.+.+.||++|+.  +.+.+..++..|||++++||++.||++++..++|++|+++.+..+...+.+ .
T Consensus       187 td~~~~~~e~~~~~~~g~vyr~d~~--~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~  263 (355)
T 3sre_A          187 IDPYLKSWEMHLGLAWSFVTYYSPN--DVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-S  263 (355)
T ss_dssp             SSHHHHHHHHHTTCCCEEEEEECTT--CCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-E
T ss_pred             CCcccccchhhccCCccEEEEEECC--eEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-e
Confidence            1100000000012346789999984  666777788999999999999999999999999999999765443445555 4


Q ss_pred             CCCCCCceeeCC-CCCEEEEeccCCCccccccccccccccCCCcccCCCeEEEEC----CCCCEEEEeeCCCCCccCCce
Q 019290          245 MPRFPDNIKSDS-KGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFD----VNGNVVDVLDGNEGNTLNSVS  319 (343)
Q Consensus       245 ~~~~p~~i~~d~-~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d----~~g~~~~~~~~~~~~~~~~~~  319 (343)
                      .++.|+|+++|+ +|++|+++...+.++.          .-.|...+...|.++.    .+++....+.+ +|......+
T Consensus       264 ~~g~PDGi~vD~e~G~lwva~~~~g~~v~----------~~~P~~~~~s~v~rI~~~~~~~~~v~~v~~d-dG~~l~~~T  332 (355)
T 3sre_A          264 FDTLVDNISVDPVTGDLWVGCHPNGMRIF----------FYDAENPPGSEVLRIQDILSEEPKVTVVYAE-NGTVLQGST  332 (355)
T ss_dssp             CSSEEEEEEECTTTCCEEEEEESCHHHHH----------SCCTTSCCCEEEEEEECTTSSSCEEEEEEEE-CSSSCCSEE
T ss_pred             CCCCCceEEEeCCCCcEEEEecCCceEEE----------EECCCCCCCCEEEEEEccCCCCcEEEEEEEc-CCCEEEeeE
Confidence            577899999999 5999998753233221          0112223355777776    35667777776 676777788


Q ss_pred             eEEEeCCEEEEecCCCCeEEEEc
Q 019290          320 EVQEYGEYLYTGSSVQPYVVVIK  342 (343)
Q Consensus       320 ~~~~~~g~l~i~~~~~~~i~~~~  342 (343)
                      .+.+.+|+||||+.... ++.|+
T Consensus       333 ~a~~~~g~L~iGsv~~~-~l~c~  354 (355)
T 3sre_A          333 VAAVYKGKLLIGTVFHK-ALYCD  354 (355)
T ss_dssp             EEEEETTEEEEEESSSC-EEEEE
T ss_pred             EEEEECCEEEEEEcCCC-ceecc
Confidence            88888999999999887 66665

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.94  E-value=1.1e-23  Score=186.58  Aligned_cols=259  Identities=17%  Similarity=0.198  Sum_probs=186.0

Q ss_pred             ccccccCCCCCCCceEEEcCCCC-eeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEE
Q 019290           25 SYQQLQLPGVVGPESLAFDCNGE-GPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKF  103 (343)
Q Consensus        25 ~~~~~~~~~~~~p~~l~~d~~g~-~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~  103 (343)
                      .++.+.. ++..|++++++++|+ ++|++..+++|++|++.++ ...+.                    .....|.++++
T Consensus        19 ~~~~l~~-~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~~~~--------------------~~~~~~~~l~~   76 (296)
T 3e5z_A           19 EARRLAD-GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LSPEM--------------------HPSHHQNGHCL   76 (296)
T ss_dssp             CCEEEEC-CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EEEEE--------------------SSCSSEEEEEE
T ss_pred             cEEEEec-CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eEEEE--------------------CCCCCcceeeE
Confidence            3444443 455799999999998 7889999999999999887 66553                    12245889999


Q ss_pred             eCCCCeEEEEeCC-CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccce-eeeeecCCCc
Q 019290          104 NPVTCDLYIADAY-FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYF-MSIATGDRSG  181 (343)
Q Consensus       104 ~~~~~~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~-~~~~~~~~~~  181 (343)
                      ++ ++++|+++.. .+|+++|+++++++.+.......+...++++++|+ +|++|+++..... ...+. .........+
T Consensus        77 ~~-dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~vtd~~~g~-~~~~~~~~~~~~~~~~  153 (296)
T 3e5z_A           77 NK-QGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAP-DGSLWFSDPTYGI-DKPEEGYGGEMELPGR  153 (296)
T ss_dssp             CT-TCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECT-TSCEEEEECSHHH-HCGGGSSCCCCCSSSC
T ss_pred             CC-CCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECC-CCCEEEECCcccc-ccccccccccccCCCc
Confidence            98 8899999765 57999999888877664433333446789999999 6999998753100 00000 0000011245


Q ss_pred             eEEEEeCCCCceEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCcccc-ccceeeecCCCCCCceeeCCCCCE
Q 019290          182 RLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTT-YTPQLFAEMPRFPDNIKSDSKGEF  260 (343)
Q Consensus       182 ~v~~~d~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~p~~i~~d~~G~l  260 (343)
                      +|++++++ ++...+......+++++++++++.+ ++++..++|++|+++....+ ...+.+....+.|+++++|++|++
T Consensus       154 ~l~~~~~~-g~~~~~~~~~~~~~gi~~s~dg~~l-v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l  231 (296)
T 3e5z_A          154 WVFRLAPD-GTLSAPIRDRVKPNGLAFLPSGNLL-VSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLI  231 (296)
T ss_dssp             EEEEECTT-SCEEEEECCCSSEEEEEECTTSCEE-EEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCE
T ss_pred             EEEEECCC-CCEEEeecCCCCCccEEECCCCCEE-EEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCE
Confidence            89999987 7777777777889999999999988 88888899999998643332 122333113457999999999999


Q ss_pred             EEEeccCCCccccccccccccccCCCcccCCCeEEEECCCCCEEEEeeCCCCCccCCceeEEE---eCCEEEEecCCCCe
Q 019290          261 WIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEGNTLNSVSEVQE---YGEYLYTGSSVQPY  337 (343)
Q Consensus       261 wi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~~~~~~~~~~~~~---~~g~l~i~~~~~~~  337 (343)
                      |+++..                          +|.++|++|+.+..+..+.+     +..+..   +++.||+++..  .
T Consensus       232 ~v~~~~--------------------------~v~~~~~~g~~~~~~~~~~~-----~~~~~f~~~d~~~L~v~t~~--~  278 (296)
T 3e5z_A          232 WASAGD--------------------------GVHVLTPDGDELGRVLTPQT-----TSNLCFGGPEGRTLYMTVST--E  278 (296)
T ss_dssp             EEEETT--------------------------EEEEECTTSCEEEEEECSSC-----CCEEEEESTTSCEEEEEETT--E
T ss_pred             EEEcCC--------------------------eEEEECCCCCEEEEEECCCC-----ceeEEEECCCCCEEEEEcCC--e
Confidence            999943                          89999999998888876543     333322   35689999874  5


Q ss_pred             EEEEcC
Q 019290          338 VVVIKA  343 (343)
Q Consensus       338 i~~~~~  343 (343)
                      ++++++
T Consensus       279 l~~~~~  284 (296)
T 3e5z_A          279 FWSIET  284 (296)
T ss_dssp             EEEEEC
T ss_pred             EEEEEc
Confidence            877763

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.93  E-value=4.4e-24  Score=190.39  Aligned_cols=249  Identities=17%  Similarity=0.224  Sum_probs=183.4

Q ss_pred             CCCCCceEEEcCCCC-eeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEE
Q 019290           33 GVVGPESLAFDCNGE-GPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLY  111 (343)
Q Consensus        33 ~~~~p~~l~~d~~g~-~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~  111 (343)
                      ++..+++++++++|+ ++|++..+++|+++++. ++...+..                    ....++++++++ +++||
T Consensus        43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~~~~~~--------------------~~~~~~gl~~d~-dG~l~  100 (305)
T 3dr2_A           43 QATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTVDVLLD--------------------ATAFTNGNAVDA-QQRLV  100 (305)
T ss_dssp             CCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCEEEEEE--------------------SCSCEEEEEECT-TSCEE
T ss_pred             CCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCEEEEeC--------------------CCCccceeeECC-CCCEE
Confidence            455789999999998 77888999999999984 45555532                    223578999998 88999


Q ss_pred             EEeCC-CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCccccc-ccceeee-eecCCCceEEEEeC
Q 019290          112 IADAY-FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQR-RQYFMSI-ATGDRSGRLLKYDP  188 (343)
Q Consensus       112 v~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~-~~~~~~~-~~~~~~~~v~~~d~  188 (343)
                      +++.. .+|.+++++ ++++.+.....+.+.+.++++++++ +|++|++|..  ++. .+++... ......++|+++|+
T Consensus       101 v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~-dG~l~~td~~--~g~~~~~~~~~~~~~~~~~~v~~~d~  176 (305)
T 3dr2_A          101 HCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVAR-DGAIWFTDPP--FGLRKPSQGCPADPELAHHSVYRLPP  176 (305)
T ss_dssp             EEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECT-TSCEEEECCS--GGGSCGGGSCCCCCSSSCEEEEEECS
T ss_pred             EEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECC-CCCEEEeCcC--CCccccccccccccccCCCeEEEEcC
Confidence            99765 579999987 7777665444444457799999999 6999998753  111 0000000 00112467999999


Q ss_pred             CCCceEEeecCCCCcceeEEecCCCEEEEEEcCC-----CeEEEEEccCccccccceeeec-CCCCCCceeeCCCCCEEE
Q 019290          189 LKKNVTVMYNGLSFPNGVALSNNNSFLLLAESAT-----LKILRFWLQGERTTYTPQLFAE-MPRFPDNIKSDSKGEFWI  262 (343)
Q Consensus       189 ~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~-----~~i~~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~G~lwi  262 (343)
                      ++++++.+. .+..++++++++|++.||++++..     +.|++|++++... ...+.+.. ..+.|+++++|++|+||+
T Consensus       177 ~~g~~~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l-~~~~~~~~~~~~~pdgi~~d~~G~lwv  254 (305)
T 3dr2_A          177 DGSPLQRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGAL-HDRRHFASVPDGLPDGFCVDRGGWLWS  254 (305)
T ss_dssp             SSCCCEEEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEE-EEEEEEECCSSSCCCSEEECTTSCEEE
T ss_pred             CCCcEEEEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCc-cCCeEEEECCCCCCCeEEECCCCCEEE
Confidence            878877766 777899999999999999998763     7999999876442 44444443 356799999999999999


Q ss_pred             EeccCCCccccccccccccccCCCcccCCCeEEEECCCCCEEEEeeCCCCCccCCceeEE--EeCCEEEEecCCCCeEEE
Q 019290          263 AMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEGNTLNSVSEVQ--EYGEYLYTGSSVQPYVVV  340 (343)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~~~~~~~~~~~~--~~~g~l~i~~~~~~~i~~  340 (343)
                      ++..                          +|++++++|+.+..+..+..     +..+.  ++++.||+++..  .+++
T Consensus       255 ~~~~--------------------------gv~~~~~~g~~~~~~~~~~~-----~~~~~f~~d~~~L~it~~~--~l~~  301 (305)
T 3dr2_A          255 SSGT--------------------------GVCVFDSDGQLLGHIPTPGT-----ASNCTFDQAQQRLFITGGP--CLWM  301 (305)
T ss_dssp             CCSS--------------------------EEEEECTTSCEEEEEECSSC-----CCEEEECTTSCEEEEEETT--EEEE
T ss_pred             ecCC--------------------------cEEEECCCCCEEEEEECCCc-----eeEEEEeCCCCEEEEEcCC--eEEE
Confidence            9855                          79999999999888876653     22222  346789999975  5777


Q ss_pred             Ec
Q 019290          341 IK  342 (343)
Q Consensus       341 ~~  342 (343)
                      ++
T Consensus       302 ~~  303 (305)
T 3dr2_A          302 LP  303 (305)
T ss_dssp             EE
T ss_pred             EE
Confidence            65

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.93  E-value=5.3e-24  Score=189.19  Aligned_cols=244  Identities=12%  Similarity=0.145  Sum_probs=179.6

Q ss_pred             CCCCCceEEEcCC-CCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEE
Q 019290           33 GVVGPESLAFDCN-GEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLY  111 (343)
Q Consensus        33 ~~~~p~~l~~d~~-g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~  111 (343)
                      ++.-+|+.+++++ +.++|++..+++|++||+.++....+.                     ....+.++++++ ++++|
T Consensus        11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~---------------------~~~~~~~i~~~~-dG~l~   68 (297)
T 3g4e_A           11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRVT---------------------MDAPVSSVALRQ-SGGYV   68 (297)
T ss_dssp             CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEE---------------------CSSCEEEEEEBT-TSSEE
T ss_pred             CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEEe---------------------CCCceEEEEECC-CCCEE
Confidence            4557999999995 567778889999999999887665442                     123578999998 78899


Q ss_pred             EEeCCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCC
Q 019290          112 IADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKK  191 (343)
Q Consensus       112 v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~  191 (343)
                      ++. ..+|+++|+++++++.+.......+...++++++|+ +|++|+++.......      .......+.||+++++ +
T Consensus        69 v~~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~-dG~l~~~~~~~~~~~------~~~~~~~~~l~~~d~~-g  139 (297)
T 3g4e_A           69 ATI-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDP-AGRYFAGTMAEETAP------AVLERHQGALYSLFPD-H  139 (297)
T ss_dssp             EEE-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECT-TSCEEEEEEECCSBT------TBCCTTCEEEEEECTT-S
T ss_pred             EEE-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECC-CCCEEEecCCccccc------ccccCCCcEEEEEECC-C
Confidence            996 679999999999887765443333456789999999 699999875311000      0001124689999986 5


Q ss_pred             ceEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEcc-Cccccccceeeec---CCCCCCceeeCCCCCEEEEeccC
Q 019290          192 NVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQ-GERTTYTPQLFAE---MPRFPDNIKSDSKGEFWIAMNSA  267 (343)
Q Consensus       192 ~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~-~~~~~~~~~~~~~---~~~~p~~i~~d~~G~lwi~~~~~  267 (343)
                      +...+...+..++++++++|++.||++++..++|++|+++ ....+...+.+..   ..+.|+++++|++|+||++++. 
T Consensus       140 ~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~-  218 (297)
T 3g4e_A          140 HVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYN-  218 (297)
T ss_dssp             CEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEET-
T ss_pred             CEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcC-
Confidence            6666666677899999999999999999989999999975 2222122334433   2357999999999999999987 


Q ss_pred             CCccccccccccccccCCCcccCCCeEEEECCC-CCEEEEeeCCCCCccCCceeEEE---eCCEEEEecCCC
Q 019290          268 RGKIESNKKTAFCEETAKPWFLRDPVGVKFDVN-GNVVDVLDGNEGNTLNSVSEVQE---YGEYLYTGSSVQ  335 (343)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~---~~g~l~i~~~~~  335 (343)
                                             .+.|.++|++ |+.+..+..|..    .++.+..   +.++|||++...
T Consensus       219 -----------------------~~~v~~~d~~tG~~~~~i~~p~~----~~t~~~f~g~d~~~L~vt~~~~  263 (297)
T 3g4e_A          219 -----------------------GGRVIRLDPVTGKRLQTVKLPVD----KTTSCCFGGKNYSEMYVTCARD  263 (297)
T ss_dssp             -----------------------TTEEEEECTTTCCEEEEEECSSS----BEEEEEEESGGGCEEEEEEBCT
T ss_pred             -----------------------CCEEEEEcCCCceEEEEEECCCC----CceEEEEeCCCCCEEEEEcCCc
Confidence                                   4479999997 888888876532    3444433   357899999764

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.92  E-value=1.7e-22  Score=179.87  Aligned_cols=262  Identities=19%  Similarity=0.274  Sum_probs=182.0

Q ss_pred             CCCCCceEEEcCCCCeeEE-------EecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeC
Q 019290           33 GVVGPESLAFDCNGEGPYV-------GVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNP  105 (343)
Q Consensus        33 ~~~~p~~l~~d~~g~~l~~-------~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~  105 (343)
                      ++..|++++++++|+++++       +..+++|++||+.++++..+....               .......|.++++++
T Consensus        16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~---------------~~~~~~~~~~i~~~~   80 (314)
T 1pjx_A           16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPE---------------VNGYGGIPAGCQCDR   80 (314)
T ss_dssp             CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCE---------------ETTEECCEEEEEECS
T ss_pred             cCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecc---------------cCCCCCCCceEEEec
Confidence            5668999999999994445       477889999998887776553200               001224588999998


Q ss_pred             CC-CeEEEEeCCCeEEEEeCCCCeEEEc-ccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceE
Q 019290          106 VT-CDLYIADAYFGLMVVGPNGGQAQQL-ASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRL  183 (343)
Q Consensus       106 ~~-~~l~v~~~~~gi~~~d~~~~~~~~~-~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v  183 (343)
                       + ++||+++...+|+++|++ ++++.+ .......+...++++++|+ +|++|+++........++..  ......++|
T Consensus        81 -~~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~--~~~~~~~~l  155 (314)
T 1pjx_A           81 -DANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTR--SMQEKFGSI  155 (314)
T ss_dssp             -SSSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCB--TTSSSCEEE
T ss_pred             -CCCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECC-CCCEEEEecCcccccccccc--cccCCCCeE
Confidence             6 899999877799999999 877765 4332233345689999999 59999998642000000000  001123679


Q ss_pred             EEEeCCCCceEEeecCCCCcceeEEe----cCCCEEEEEEcCCCeEEEEEccCccccccceeeecCC----CCCCceeeC
Q 019290          184 LKYDPLKKNVTVMYNGLSFPNGVALS----NNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMP----RFPDNIKSD  255 (343)
Q Consensus       184 ~~~d~~~~~~~~~~~~~~~~~~i~~~----~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~----~~p~~i~~d  255 (343)
                      ++++++ ++...+......+++++++    ++++.+|+++...++|++|++++...+...+.+....    +.|+++++|
T Consensus       156 ~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d  234 (314)
T 1pjx_A          156 YCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFD  234 (314)
T ss_dssp             EEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEB
T ss_pred             EEECCC-CCEEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEEC
Confidence            999987 6766655556678999999    9988899998888999999976322112222332222    458889999


Q ss_pred             CCCCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECCC-CCEEEEeeCCCCCccCCceeEEEe-CCE-EEEec
Q 019290          256 SKGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVN-GNVVDVLDGNEGNTLNSVSEVQEY-GEY-LYTGS  332 (343)
Q Consensus       256 ~~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~~-~g~-l~i~~  332 (343)
                      ++|++|+++..                        .++|.++|++ ++.+..+..+.    ..+..+..+ +|+ ||+++
T Consensus       235 ~~G~l~v~~~~------------------------~~~i~~~d~~~g~~~~~~~~~~----~~~~~i~~~~dg~~l~v~~  286 (314)
T 1pjx_A          235 EDNNLLVANWG------------------------SSHIEVFGPDGGQPKMRIRCPF----EKPSNLHFKPQTKTIFVTE  286 (314)
T ss_dssp             TTCCEEEEEET------------------------TTEEEEECTTCBSCSEEEECSS----SCEEEEEECTTSSEEEEEE
T ss_pred             CCCCEEEEEcC------------------------CCEEEEEcCCCCcEeEEEeCCC----CCceeEEECCCCCEEEEEe
Confidence            99999999865                        3589999997 77666665432    234455443 454 99999


Q ss_pred             CCCCeEEEEcC
Q 019290          333 SVQPYVVVIKA  343 (343)
Q Consensus       333 ~~~~~i~~~~~  343 (343)
                      ...+.|.+++.
T Consensus       287 ~~~~~l~~~~~  297 (314)
T 1pjx_A          287 HENNAVWKFEW  297 (314)
T ss_dssp             TTTTEEEEEEC
T ss_pred             CCCCeEEEEeC
Confidence            99889999863

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.89  E-value=2.7e-20  Score=166.01  Aligned_cols=239  Identities=16%  Similarity=0.167  Sum_probs=168.6

Q ss_pred             ccccccccCCCCCCCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEE
Q 019290           23 SKSYQQLQLPGVVGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIK  102 (343)
Q Consensus        23 ~~~~~~~~~~~~~~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~  102 (343)
                      .+...+++.+  ..|++++++++|+++|++..+++|+++|++++ ...+.                    .....|++++
T Consensus        22 ~~~~~~~p~~--~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~--------------------~~~~~p~gia   78 (306)
T 2p4o_A           22 AKIITSFPVN--TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHA--------------------TVEGKVSGLA   78 (306)
T ss_dssp             EEEEEEECTT--CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEE--------------------ECSSEEEEEE
T ss_pred             ceEeEeCCCC--CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEE--------------------eCCCCceeEE
Confidence            4445555554  47999999999996667778999999998874 33222                    1123689999


Q ss_pred             EeCCCCeEEEEeCC-C--eEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCC
Q 019290          103 FNPVTCDLYIADAY-F--GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDR  179 (343)
Q Consensus       103 ~~~~~~~l~v~~~~-~--gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~  179 (343)
                      +++ +++||+++.. +  .|++++..+++++.+.....   ...+++++..+ ++.+|+++..                 
T Consensus        79 ~~~-dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~---~~~~~g~~~~~-~~~~~v~d~~-----------------  136 (306)
T 2p4o_A           79 FTS-NGDLVATGWNADSIPVVSLVKSDGTVETLLTLPD---AIFLNGITPLS-DTQYLTADSY-----------------  136 (306)
T ss_dssp             ECT-TSCEEEEEECTTSCEEEEEECTTSCEEEEEECTT---CSCEEEEEESS-SSEEEEEETT-----------------
T ss_pred             EcC-CCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCC---ccccCcccccC-CCcEEEEECC-----------------
Confidence            998 7889999854 2  38999988888876644321   24567777777 5889998864                 


Q ss_pred             CceEEEEeCCCCceEEe-----------ecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCC
Q 019290          180 SGRLLKYDPLKKNVTVM-----------YNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRF  248 (343)
Q Consensus       180 ~~~v~~~d~~~~~~~~~-----------~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  248 (343)
                      .+.||++|+.+++.+..           ...+..++++  +++++.||++++..++|++|+++++..+...+.+... ..
T Consensus       137 ~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~-~~  213 (306)
T 2p4o_A          137 RGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ-TN  213 (306)
T ss_dssp             TTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES-CC
T ss_pred             CCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc-CC
Confidence            56899999875532211           1234568888  7889999999999999999998753322344444433 35


Q ss_pred             CCceeeCCCCCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECCCCCEEEEeeCCCCCccCCceeEEE-----
Q 019290          249 PDNIKSDSKGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEGNTLNSVSEVQE-----  323 (343)
Q Consensus       249 p~~i~~d~~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~~~~~~~~~~~~~-----  323 (343)
                      |+++++|++|++|++++.                        .+.|.++|++|+.......+.+  ...++.+..     
T Consensus       214 P~gi~vd~dG~l~va~~~------------------------~~~V~~~~~~G~~~~~~~~~~~--~~~p~~~a~~g~~~  267 (306)
T 2p4o_A          214 IDDFAFDVEGNLYGATHI------------------------YNSVVRIAPDRSTTIIAQAEQG--VIGSTAVAFGQTEG  267 (306)
T ss_dssp             CSSEEEBTTCCEEEECBT------------------------TCCEEEECTTCCEEEEECGGGT--CTTEEEEEECCSTT
T ss_pred             CCCeEECCCCCEEEEeCC------------------------CCeEEEECCCCCEEEEeecccc--cCCceEEEEecccC
Confidence            999999999999999986                        4588999999887543222211  234555543     


Q ss_pred             eCCEEEEecCCC
Q 019290          324 YGEYLYTGSSVQ  335 (343)
Q Consensus       324 ~~g~l~i~~~~~  335 (343)
                      +.++||+++...
T Consensus       268 d~~~LyVt~~~~  279 (306)
T 2p4o_A          268 DCTAIYVVTNGG  279 (306)
T ss_dssp             TTTEEEEEECTT
T ss_pred             CCCEEEEECCCC
Confidence            358999998753

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.89  E-value=8.5e-21  Score=170.81  Aligned_cols=245  Identities=17%  Similarity=0.190  Sum_probs=175.7

Q ss_pred             ccccCCCCCCCceEEEcCC-CCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeC
Q 019290           27 QQLQLPGVVGPESLAFDCN-GEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNP  105 (343)
Q Consensus        27 ~~~~~~~~~~p~~l~~d~~-g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~  105 (343)
                      +.+.-..+..+++++++++ +.++|++..+++|+++|+++++...+..                     ...+.++++++
T Consensus        41 ~~~~~~~~~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~---------------------~~~v~~i~~~~   99 (326)
T 2ghs_A           41 RVLDETPMLLGEGPTFDPASGTAWWFNILERELHELHLASGRKTVHAL---------------------PFMGSALAKIS   99 (326)
T ss_dssp             EEEECSCCSBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEEC---------------------SSCEEEEEEEE
T ss_pred             EEeeccCCCCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEC---------------------CCcceEEEEeC
Confidence            3443334456899999997 5566788888999999998876554421                     12477899998


Q ss_pred             CCCeEEEEeCCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEE
Q 019290          106 VTCDLYIADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLK  185 (343)
Q Consensus       106 ~~~~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~  185 (343)
                       ++++|++. ..+|+++|+++++++.+.......+...++++++|+ +|++|+++....           .....++|++
T Consensus       100 -dg~l~v~~-~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~-----------~~~~~~~l~~  165 (326)
T 2ghs_A          100 -DSKQLIAS-DDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRK-----------AETGAGSIYH  165 (326)
T ss_dssp             -TTEEEEEE-TTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETT-----------CCTTCEEEEE
T ss_pred             -CCeEEEEE-CCCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECC-CCCEEEEeCCCc-----------CCCCceEEEE
Confidence             89999996 678999999988877664322222335689999999 599999874310           0112467999


Q ss_pred             EeCCCCceEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEcc-Ccc-ccccceeeec---CCCCCCceeeCCCCCE
Q 019290          186 YDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQ-GER-TTYTPQLFAE---MPRFPDNIKSDSKGEF  260 (343)
Q Consensus       186 ~d~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~-~~~-~~~~~~~~~~---~~~~p~~i~~d~~G~l  260 (343)
                      ++  +++.+.+......++++++++|++.+|++++..++|++++++ ... .+...+.+..   ..+.|+++++|++|++
T Consensus       166 ~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~l  243 (326)
T 2ghs_A          166 VA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHI  243 (326)
T ss_dssp             EE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCE
T ss_pred             Ee--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCE
Confidence            99  477666555556789999999999999999888999999986 111 1122233332   2356889999999999


Q ss_pred             EEEeccCCCccccccccccccccCCCcccCCCeEEEECCCCCEEEEeeCCCCCccCCceeEEE---eCCEEEEecCCCC
Q 019290          261 WIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEGNTLNSVSEVQE---YGEYLYTGSSVQP  336 (343)
Q Consensus       261 wi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~~~~~~~~~~~~~---~~g~l~i~~~~~~  336 (343)
                      |+++..                        .++|+++|++++.+..+..+..    .++.+..   +.+.||+++....
T Consensus       244 wva~~~------------------------~~~v~~~d~~g~~~~~i~~~~~----~~~~~af~g~d~~~L~vt~~~~~  294 (326)
T 2ghs_A          244 WNARWG------------------------EGAVDRYDTDGNHIARYEVPGK----QTTCPAFIGPDASRLLVTSAREH  294 (326)
T ss_dssp             EEEEET------------------------TTEEEEECTTCCEEEEEECSCS----BEEEEEEESTTSCEEEEEEBCTT
T ss_pred             EEEEeC------------------------CCEEEEECCCCCEEEEEECCCC----CcEEEEEecCCCCEEEEEecCCC
Confidence            999875                        3489999999988777765532    3444443   3478999988763

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.88  E-value=1.8e-19  Score=158.88  Aligned_cols=241  Identities=14%  Similarity=0.156  Sum_probs=175.4

Q ss_pred             cccccCC-CCCCCceEEEcCCCCeeEEE-ecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEE
Q 019290           26 YQQLQLP-GVVGPESLAFDCNGEGPYVG-VSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKF  103 (343)
Q Consensus        26 ~~~~~~~-~~~~p~~l~~d~~g~~l~~~-~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~  103 (343)
                      .+++.+| +...|++|++|++|+ +|++ ..+++|.++|+. +++..+..                  ......|.++++
T Consensus        10 ~~~~~~~~~~~~p~~i~~d~~g~-l~v~~~~~~~v~~~~~~-~~~~~~~~------------------~~~~~~~~~i~~   69 (300)
T 2qc5_A           10 LEEFNLSIPDSGPYGITSSEDGK-VWFTQHKANKISSLDQS-GRIKEFEV------------------PTPDAKVMCLIV   69 (300)
T ss_dssp             EEEEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEEEC------------------SSTTCCEEEEEE
T ss_pred             EEEEecCCCCCCcceeeECCCCC-EEEEcCCCCeEEEECCC-CceEEEEC------------------CCCCCcceeEEE
Confidence            4566777 567899999999999 5554 467899999988 66665532                  112346889999


Q ss_pred             eCCCCeEEEEeCC-CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCce
Q 019290          104 NPVTCDLYIADAY-FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGR  182 (343)
Q Consensus       104 ~~~~~~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~  182 (343)
                      ++ ++++|+++.. .+|+++|++ ++...+....   ....++++++++ +|++|+++..                 .+.
T Consensus        70 ~~-~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~---~~~~~~~i~~~~-~g~l~v~~~~-----------------~~~  126 (300)
T 2qc5_A           70 SS-LGDIWFTENGANKIGKLSKK-GGFTEYPLPQ---PDSGPYGITEGL-NGDIWFTQLN-----------------GDR  126 (300)
T ss_dssp             CT-TSCEEEEETTTTEEEEECTT-SCEEEEECSS---TTCCEEEEEECS-TTCEEEEETT-----------------TTE
T ss_pred             CC-CCCEEEEecCCCeEEEECCC-CCeEEecCCC---CCCCCccceECC-CCCEEEEccC-----------------CCe
Confidence            98 8899999864 459999998 6665442211   125688999999 5999998864                 467


Q ss_pred             EEEEeCCCCceEEee--cCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeee-c-CCCCCCceeeCCCC
Q 019290          183 LLKYDPLKKNVTVMY--NGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFA-E-MPRFPDNIKSDSKG  258 (343)
Q Consensus       183 v~~~d~~~~~~~~~~--~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~-~-~~~~p~~i~~d~~G  258 (343)
                      |+++|++ ++...+.  .....+.+++++++++ +|+++...+.|++++.++     +...+. . ....|.++++|++|
T Consensus       127 i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~~g-----~~~~~~~~~~~~~~~~i~~d~~g  199 (300)
T 2qc5_A          127 IGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNA-LWFTENQNNSIGRITNTG-----KLEEYPLPTNAAAPVGITSGNDG  199 (300)
T ss_dssp             EEEECTT-SCEEEEECSSTTCCEEEEEECTTSS-EEEEETTTTEEEEECTTC-----CEEEEECSSTTCCEEEEEECTTS
T ss_pred             EEEECCC-CCEEEccCCCCCCCceeEEECCCCC-EEEEecCCCeEEEECCCC-----cEEEeeCCCCCCCcceEEECCCC
Confidence            9999987 6665432  2356789999999887 899988788999998743     222221 1 12357889999999


Q ss_pred             CEEEEeccCCCccccccccccccccCCCcccCCCeEEEECCCCCEEEEeeCCCCCccCCceeEEEe-CCEEEEecCCCCe
Q 019290          259 EFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEGNTLNSVSEVQEY-GEYLYTGSSVQPY  337 (343)
Q Consensus       259 ~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~~~~  337 (343)
                      ++|+++..                        .+.|++++++++.... ..+..  ...+..+..+ +|+||+++...+.
T Consensus       200 ~l~v~~~~------------------------~~~i~~~~~~g~~~~~-~~~~~--~~~~~~i~~d~~g~l~v~~~~~~~  252 (300)
T 2qc5_A          200 ALWFVEIM------------------------GNKIGRITTTGEISEY-DIPTP--NARPHAITAGKNSEIWFTEWGANQ  252 (300)
T ss_dssp             SEEEEETT------------------------TTEEEEECTTCCEEEE-ECSST--TCCEEEEEECSTTCEEEEETTTTE
T ss_pred             CEEEEccC------------------------CCEEEEEcCCCcEEEE-ECCCC--CCCceEEEECCCCCEEEeccCCCe
Confidence            99999876                        3478999997776543 22322  3445566555 7899999999999


Q ss_pred             EEEEcC
Q 019290          338 VVVIKA  343 (343)
Q Consensus       338 i~~~~~  343 (343)
                      |.++++
T Consensus       253 i~~~~~  258 (300)
T 2qc5_A          253 IGRITN  258 (300)
T ss_dssp             EEEECT
T ss_pred             EEEECC
Confidence            999874

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.88  E-value=4.8e-20  Score=165.68  Aligned_cols=251  Identities=20%  Similarity=0.227  Sum_probs=176.1

Q ss_pred             CCCCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEE
Q 019290           34 VVGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIA  113 (343)
Q Consensus        34 ~~~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~  113 (343)
                      ...|++++++++|+++|++..+++|++||++++++..+..                   .....|.++++++ ++++|++
T Consensus        44 ~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~-------------------~~~~~~~~i~~~~-dg~l~v~  103 (333)
T 2dg1_A           44 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFV-------------------SHKANPAAIKIHK-DGRLFVC  103 (333)
T ss_dssp             CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEE-------------------CSSSSEEEEEECT-TSCEEEE
T ss_pred             CccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEee-------------------CCCCCcceEEECC-CCcEEEE
Confidence            3468999999999955577888999999998887766531                   1123588999998 7899999


Q ss_pred             eCCC-----eEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeC
Q 019290          114 DAYF-----GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDP  188 (343)
Q Consensus       114 ~~~~-----gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~  188 (343)
                      +...     +|+++|+++++.+.+....  .....++++++|+ +|++|+++....           .....++|+++++
T Consensus       104 ~~~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~~~~~~i~~d~-~g~l~v~~~~~~-----------~~~~~~~l~~~~~  169 (333)
T 2dg1_A          104 YLGDFKSTGGIFAATENGDNLQDIIEDL--STAYCIDDMVFDS-KGGFYFTDFRGY-----------STNPLGGVYYVSP  169 (333)
T ss_dssp             ECTTSSSCCEEEEECTTSCSCEEEECSS--SSCCCEEEEEECT-TSCEEEEECCCB-----------TTBCCEEEEEECT
T ss_pred             eCCCCCCCceEEEEeCCCCEEEEEEccC--ccCCcccceEECC-CCCEEEEecccc-----------ccCCCceEEEEeC
Confidence            7655     7999999988766432211  1235688999999 599999876310           0111467999998


Q ss_pred             CCCceEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccc-cccc--eeeecCC--CCCCceeeCCCCCEEEE
Q 019290          189 LKKNVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERT-TYTP--QLFAEMP--RFPDNIKSDSKGEFWIA  263 (343)
Q Consensus       189 ~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~-~~~~--~~~~~~~--~~p~~i~~d~~G~lwi~  263 (343)
                      ++++...+......+++++++++++.+|+++...++|++|+++.+.. +...  ..+....  ..|+++++|++|++|++
T Consensus       170 ~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~  249 (333)
T 2dg1_A          170 DFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVA  249 (333)
T ss_dssp             TSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEE
T ss_pred             CCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEE
Confidence            87777665555567899999999999999988788999999853211 0111  1111122  35888999999999999


Q ss_pred             eccCCCccccccccccccccCCCcccCCCeEEEECCCCCEEEEeeCCCC--CccCCceeEEE--eCCEEEEecCCC----
Q 019290          264 MNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEG--NTLNSVSEVQE--YGEYLYTGSSVQ----  335 (343)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~~--~~~~~~~~~~~--~~g~l~i~~~~~----  335 (343)
                      +..                        .+.|.++|++++.+..+..+..  .....+..+..  ++++||+++...    
T Consensus       250 ~~~------------------------~~~v~~~d~~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~  305 (333)
T 2dg1_A          250 MYG------------------------QGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGG  305 (333)
T ss_dssp             EET------------------------TTEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTC
T ss_pred             EcC------------------------CCEEEEECCCCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCccCCCC
Confidence            865                        3488999999888777765432  01113333333  346899998873    


Q ss_pred             -CeEEEEc
Q 019290          336 -PYVVVIK  342 (343)
Q Consensus       336 -~~i~~~~  342 (343)
                       ..+.+++
T Consensus       306 ~~~l~~~~  313 (333)
T 2dg1_A          306 GSMLYTVN  313 (333)
T ss_dssp             CEEEEEEE
T ss_pred             CceEEEEe
Confidence             3566654

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.88  E-value=2.5e-19  Score=157.58  Aligned_cols=242  Identities=13%  Similarity=0.221  Sum_probs=169.0

Q ss_pred             CCCCCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEE
Q 019290           33 GVVGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYI  112 (343)
Q Consensus        33 ~~~~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v  112 (343)
                      .+..|.+++++++|++++++..+++|.+||+++.....+....              ........|.++++++.+++||+
T Consensus        28 ~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~--------------~~~~~~~~p~~i~~~~~~g~l~v   93 (286)
T 1q7f_A           28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECG--------------KRDSQLLYPNRVAVVRNSGDIIV   93 (286)
T ss_dssp             CBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBS--------------SSTTCBSSEEEEEEETTTTEEEE
T ss_pred             ccCCCceEEECCCCCEEEEECCCCEEEEECCCCcEEEEecccC--------------CCcccccCceEEEEEcCCCeEEE
Confidence            4567999999999995556678899999998865444442110              00122346899999544899999


Q ss_pred             EeC--CCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCC
Q 019290          113 ADA--YFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLK  190 (343)
Q Consensus       113 ~~~--~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~  190 (343)
                      ++.  ...|+++|.++.....+..    .....++++++++ +|++|+++..                 .+.|+++|+++
T Consensus        94 ~~~~~~~~i~~~d~~g~~~~~~~~----~~~~~~~~i~~~~-~g~l~v~~~~-----------------~~~i~~~~~~g  151 (286)
T 1q7f_A           94 TERSPTHQIQIYNQYGQFVRKFGA----TILQHPRGVTVDN-KGRIIVVECK-----------------VMRVIIFDQNG  151 (286)
T ss_dssp             EECGGGCEEEEECTTSCEEEEECT----TTCSCEEEEEECT-TSCEEEEETT-----------------TTEEEEECTTS
T ss_pred             EcCCCCCEEEEECCCCcEEEEecC----ccCCCceEEEEeC-CCCEEEEECC-----------------CCEEEEEcCCC
Confidence            985  3569999966443333311    1235689999999 5999998865                 56799999775


Q ss_pred             CceEEee--cCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecC--CCCCCceeeCCCCCEEEEecc
Q 019290          191 KNVTVMY--NGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEM--PRFPDNIKSDSKGEFWIAMNS  266 (343)
Q Consensus       191 ~~~~~~~--~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~~~p~~i~~d~~G~lwi~~~~  266 (343)
                      .....+.  ..+..|.+++++++++ +|+++..+++|++|+.++.    ....+...  ...|.++++|++|++|+++..
T Consensus       152 ~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~g~----~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~  226 (286)
T 1q7f_A          152 NVLHKFGCSKHLEFPNGVVVNDKQE-IFISDNRAHCVKVFNYEGQ----YLRQIGGEGITNYPIGVGINSNGEILIADNH  226 (286)
T ss_dssp             CEEEEEECTTTCSSEEEEEECSSSE-EEEEEGGGTEEEEEETTCC----EEEEESCTTTSCSEEEEEECTTCCEEEEECS
T ss_pred             CEEEEeCCCCccCCcEEEEECCCCC-EEEEECCCCEEEEEcCCCC----EEEEEccCCccCCCcEEEECCCCCEEEEeCC
Confidence            4444433  3456789999999875 8999888899999997652    22223221  135889999999999999876


Q ss_pred             CCCccccccccccccccCCCcccCCC-eEEEECCCCCEEEEeeCCCCCccCCceeEEEe-CCEEEEecCCCCeEEEEc
Q 019290          267 ARGKIESNKKTAFCEETAKPWFLRDP-VGVKFDVNGNVVDVLDGNEGNTLNSVSEVQEY-GEYLYTGSSVQPYVVVIK  342 (343)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~~~~i~~~~  342 (343)
                                              .+ .|.+++++|+.+..+.....  ...+..+..+ +|+||+++. .++|.+++
T Consensus       227 ------------------------~~~~i~~~~~~g~~~~~~~~~~~--~~~~~~i~~~~~g~l~vs~~-~~~v~v~~  277 (286)
T 1q7f_A          227 ------------------------NNFNLTIFTQDGQLISALESKVK--HAQCFDVALMDDGSVVLASK-DYRLYIYR  277 (286)
T ss_dssp             ------------------------SSCEEEEECTTSCEEEEEEESSC--CSCEEEEEEETTTEEEEEET-TTEEEEEE
T ss_pred             ------------------------CCEEEEEECCCCCEEEEEcccCC--CCcceeEEECCCCcEEEECC-CCeEEEEE
Confidence                                    33 78899999988777654322  2234444444 899999964 67887775

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.87  E-value=8.5e-20  Score=158.89  Aligned_cols=233  Identities=21%  Similarity=0.329  Sum_probs=165.1

Q ss_pred             CCceEEEcCCCCeeEE-E-ecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEE
Q 019290           36 GPESLAFDCNGEGPYV-G-VSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIA  113 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~-~-~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~  113 (343)
                      .|.+++++++|+ +|+ + ..+++|+++++.+.....+.                   ......|.++++++ +++||++
T Consensus        25 ~p~~i~~~~~g~-l~v~~~~~~~~i~~~~~~~~~~~~~~-------------------~~~~~~p~~i~~~~-~g~l~v~   83 (270)
T 1rwi_B           25 SPSGVAVDSAGN-VYVTSEGMYGRVVKLATGSTGTTVLP-------------------FNGLYQPQGLAVDG-AGTVYVT   83 (270)
T ss_dssp             CEEEEEECTTCC-EEEEECSSSCEEEEECC-----EECC-------------------CCSCCSCCCEEECT-TCCEEEE
T ss_pred             CccceEECCCCC-EEEEccCCCCcEEEecCCCcccceEe-------------------eCCcCCcceeEECC-CCCEEEE
Confidence            899999999999 665 5 67789999998765433321                   12234688999998 7889999


Q ss_pred             eCCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCce
Q 019290          114 DAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNV  193 (343)
Q Consensus       114 ~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~  193 (343)
                      +...+|+++|++++....+..    .....++++++++ +|++|+++..                 .+.|++++..+...
T Consensus        84 ~~~~~i~~~d~~~~~~~~~~~----~~~~~p~~i~~~~-~g~l~v~~~~-----------------~~~i~~~~~~~~~~  141 (270)
T 1rwi_B           84 DFNNRVVTLAAGSNNQTVLPF----DGLNYPEGLAVDT-QGAVYVADRG-----------------NNRVVKLAAGSKTQ  141 (270)
T ss_dssp             ETTTEEEEECTTCSCCEECCC----CSCSSEEEEEECT-TCCEEEEEGG-----------------GTEEEEECTTCCSC
T ss_pred             cCCCEEEEEeCCCceEeeeec----CCcCCCcceEECC-CCCEEEEECC-----------------CCEEEEEECCCcee
Confidence            875579999998766544321    1224688999999 5999998754                 46799998654443


Q ss_pred             EEe-ecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeec-CCCCCCceeeCCCCCEEEEeccCCCcc
Q 019290          194 TVM-YNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAE-MPRFPDNIKSDSKGEFWIAMNSARGKI  271 (343)
Q Consensus       194 ~~~-~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~G~lwi~~~~~~~~~  271 (343)
                      ... ...+..+.+++++++++ +|+++...++|++++.++...    ..... ....|.++++|++|++|+++..     
T Consensus       142 ~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~~----~~~~~~~~~~p~~i~~d~~g~l~v~~~~-----  211 (270)
T 1rwi_B          142 TVLPFTGLNDPDGVAVDNSGN-VYVTDTDNNRVVKLEAESNNQ----VVLPFTDITAPWGIAVDEAGTVYVTEHN-----  211 (270)
T ss_dssp             EECCCCSCCSCCCEEECTTCC-EEEEEGGGTEEEEECTTTCCE----EECCCSSCCSEEEEEECTTCCEEEEETT-----
T ss_pred             EeeccccCCCceeEEEeCCCC-EEEEECCCCEEEEEecCCCce----EeecccCCCCceEEEECCCCCEEEEECC-----
Confidence            322 23345789999999886 999988888999999775321    11111 1135889999999999999976     


Q ss_pred             ccccccccccccCCCcccCCCeEEEECCCCCEEEEeeCCCCCccCCceeEEEe-CCEEEEecCCCCeEEEEcC
Q 019290          272 ESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEGNTLNSVSEVQEY-GEYLYTGSSVQPYVVVIKA  343 (343)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~~~~i~~~~~  343 (343)
                                         .+.|.+++++++....... .+  ...+..+..+ +|+||+++...++|.+|+.
T Consensus       212 -------------------~~~v~~~~~~~~~~~~~~~-~~--~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~  262 (270)
T 1rwi_B          212 -------------------TNQVVKLLAGSTTSTVLPF-TG--LNTPLAVAVDSDRTVYVADRGNDRVVKLTS  262 (270)
T ss_dssp             -------------------TSCEEEECTTCSCCEECCC-CS--CSCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred             -------------------CCcEEEEcCCCCcceeecc-CC--CCCceeEEECCCCCEEEEECCCCEEEEEcC
Confidence                               3588999998765444321 11  2445666655 7889999999999999863

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.86  E-value=3.7e-19  Score=165.02  Aligned_cols=241  Identities=15%  Similarity=0.089  Sum_probs=172.0

Q ss_pred             CCCCCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEE
Q 019290           33 GVVGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYI  112 (343)
Q Consensus        33 ~~~~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v  112 (343)
                      ++..|.+|++|++|++++++..+++|.++|++++....+..                    ....+. ++++++++.||+
T Consensus       129 ~~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~--------------------~~~~~~-ia~~~~g~~l~~  187 (409)
T 3hrp_A          129 KFKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHP--------------------GFKGGK-PAVTKDKQRVYS  187 (409)
T ss_dssp             CCCCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEE--------------------TCCBCB-CEECTTSSEEEE
T ss_pred             ccCCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeec--------------------cCCCCc-eeEecCCCcEEE
Confidence            46689999999999966677778999999998877766542                    122356 889986667899


Q ss_pred             EeCCC--eEEEEeCCCCeE-EEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCC
Q 019290          113 ADAYF--GLMVVGPNGGQA-QQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPL  189 (343)
Q Consensus       113 ~~~~~--gi~~~d~~~~~~-~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~  189 (343)
                      ++...  .|++++++++.. ..+... .......++++++++.+|.||+++.                  .+.|+++|++
T Consensus       188 ~d~~~~~~I~~~d~~~~~~~~~~g~~-~~~~~~~p~~iav~p~~g~lyv~d~------------------~~~I~~~d~~  248 (409)
T 3hrp_A          188 IGWEGTHTVYVYMKASGWAPTRIGQL-GSTFSGKIGAVALDETEEWLYFVDS------------------NKNFGRFNVK  248 (409)
T ss_dssp             EBSSTTCEEEEEEGGGTTCEEEEEEC-CTTSCSCCCBCEECTTSSEEEEECT------------------TCEEEEEETT
T ss_pred             EecCCCceEEEEEcCCCceeEEeeec-cchhcCCcEEEEEeCCCCeEEEEEC------------------CCcEEEEECC
Confidence            87643  699999876543 222111 1112367899999995599999653                  4579999998


Q ss_pred             CCceEEe----ecCCC--Ccc-eeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecC---------------CC
Q 019290          190 KKNVTVM----YNGLS--FPN-GVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEM---------------PR  247 (343)
Q Consensus       190 ~~~~~~~----~~~~~--~~~-~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~---------------~~  247 (343)
                      ++....+    ..+..  .|. +++++++++.||+++...++|++++.++..     ..+...               -.
T Consensus       249 ~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~-----~~~~g~~~~~g~~dg~~~~~~~~  323 (409)
T 3hrp_A          249 TQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGEC-----EWFCGSATQKTVQDGLREEALFA  323 (409)
T ss_dssp             TCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCE-----EEEEECTTCCSCBCEEGGGCBCS
T ss_pred             CCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCE-----EEEEeCCCCCCcCCCcccccEeC
Confidence            7765544    22222  234 999999778899999999999999987631     111110               12


Q ss_pred             CCCceeeCCCCCEEEEec-cCCCccccccccccccccCCCcccCCCeEEEEC-CCCCEEEEeeCCCC----------Ccc
Q 019290          248 FPDNIKSDSKGEFWIAMN-SARGKIESNKKTAFCEETAKPWFLRDPVGVKFD-VNGNVVDVLDGNEG----------NTL  315 (343)
Q Consensus       248 ~p~~i~~d~~G~lwi~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~g~~~~~~~~~~~----------~~~  315 (343)
                      .|.++++|++|+||+++. .                        .+.|.+++ ++|+.......+..          ..+
T Consensus       324 ~P~gia~d~dG~lyvad~~~------------------------~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~  379 (409)
T 3hrp_A          324 QPNGMTVDEDGNFYIVDGFK------------------------GYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATF  379 (409)
T ss_dssp             SEEEEEECTTCCEEEEETTT------------------------TCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCB
T ss_pred             CCeEEEEeCCCCEEEEeCCC------------------------CCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEe
Confidence            488999999999999987 6                        45889999 67776555433111          124


Q ss_pred             CCceeEEEe-CCEEEEecCCCCeEEEEc
Q 019290          316 NSVSEVQEY-GEYLYTGSSVQPYVVVIK  342 (343)
Q Consensus       316 ~~~~~~~~~-~g~l~i~~~~~~~i~~~~  342 (343)
                      ..+..+..+ +|+||++....++|.++.
T Consensus       380 ~~P~giavd~~g~lyVad~~n~~Ir~i~  407 (409)
T 3hrp_A          380 NYPYDICYDGEGGYWIAEAWGKAIRKYA  407 (409)
T ss_dssp             SSEEEEEECSSSEEEEEESTTCEEEEEE
T ss_pred             CCceEEEEcCCCCEEEEECCCCeEEEEE
Confidence            556666666 699999999999999986

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.86  E-value=1.1e-18  Score=153.69  Aligned_cols=241  Identities=14%  Similarity=0.171  Sum_probs=172.2

Q ss_pred             cccccCC-CCCCCceEEEcCCCCeeEEEec-CCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEE
Q 019290           26 YQQLQLP-GVVGPESLAFDCNGEGPYVGVS-DGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKF  103 (343)
Q Consensus        26 ~~~~~~~-~~~~p~~l~~d~~g~~l~~~~~-~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~  103 (343)
                      ++++++| ....|.+|++|++|+ +|++.. +++|+++|+. +.+..+...                  .....|.++++
T Consensus         5 ~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~v~~~d~~-~~~~~~~~~------------------~~~~~~~~i~~   64 (299)
T 2z2n_A            5 LQELNLTNQDTGPYGITVSDKGK-VWITQHKANMISCINLD-GKITEYPLP------------------TPDAKVMCLTI   64 (299)
T ss_dssp             EEEEECCSSSCCEEEEEECTTSC-EEEEETTTTEEEEECTT-CCEEEEECS------------------STTCCEEEEEE
T ss_pred             EEEEcCCCcCCCccceEECCCCC-EEEEecCCCcEEEEcCC-CCeEEecCC------------------cccCceeeEEE
Confidence            3455666 456899999999999 665554 7899999988 666655321                  12246889999


Q ss_pred             eCCCCeEEEEeCC-CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCce
Q 019290          104 NPVTCDLYIADAY-FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGR  182 (343)
Q Consensus       104 ~~~~~~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~  182 (343)
                      ++ ++.+|+++.. .+|++++++ ++++.+...   .....++++++++ +|++|+++..                 .++
T Consensus        65 ~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~---~~~~~~~~i~~~~-~g~l~v~~~~-----------------~~~  121 (299)
T 2z2n_A           65 SS-DGEVWFTENAANKIGRITKK-GIIKEYTLP---NPDSAPYGITEGP-NGDIWFTEMN-----------------GNR  121 (299)
T ss_dssp             CT-TSCEEEEETTTTEEEEECTT-SCEEEEECS---STTCCEEEEEECT-TSCEEEEETT-----------------TTE
T ss_pred             CC-CCCEEEeCCCCCeEEEECCC-CcEEEEeCC---CcCCCceeeEECC-CCCEEEEecC-----------------Cce
Confidence            98 8899999764 469999987 555544311   1235688999999 5999998764                 467


Q ss_pred             EEEEeCCCCceEEee--cCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeee--cCCCCCCceeeCCCC
Q 019290          183 LLKYDPLKKNVTVMY--NGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFA--EMPRFPDNIKSDSKG  258 (343)
Q Consensus       183 v~~~d~~~~~~~~~~--~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~p~~i~~d~~G  258 (343)
                      |+++|+ +++...+.  .....+.++++++++ .+|+++...+.|++++..+     +...+.  .....|.++++|++|
T Consensus       122 i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~g-----~~~~~~~~~~~~~~~~i~~~~~g  194 (299)
T 2z2n_A          122 IGRITD-DGKIREYELPNKGSYPSFITLGSDN-ALWFTENQNNAIGRITESG-----DITEFKIPTPASGPVGITKGNDD  194 (299)
T ss_dssp             EEEECT-TCCEEEEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECTTC-----CEEEEECSSTTCCEEEEEECTTS
T ss_pred             EEEECC-CCCEEEecCCCCCCCCceEEEcCCC-CEEEEeCCCCEEEEEcCCC-----cEEEeeCCCCCCcceeEEECCCC
Confidence            999998 56655443  234568999999887 4888887788999999732     222221  112347789999999


Q ss_pred             CEEEEeccCCCccccccccccccccCCCcccCCCeEEEECCCCCEEEEeeCCCCCccCCceeEEEe-CCEEEEecCCCCe
Q 019290          259 EFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEGNTLNSVSEVQEY-GEYLYTGSSVQPY  337 (343)
Q Consensus       259 ~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~~~~  337 (343)
                      ++|+++..                        .+.|.++|++++... +..+..  ...+..+..+ +|+||+++...+.
T Consensus       195 ~l~v~~~~------------------------~~~i~~~~~~g~~~~-~~~~~~--~~~~~~i~~~~~g~l~v~~~~~~~  247 (299)
T 2z2n_A          195 ALWFVEII------------------------GNKIGRITTSGEITE-FKIPTP--NARPHAITAGAGIDLWFTEWGANK  247 (299)
T ss_dssp             SEEEEETT------------------------TTEEEEECTTCCEEE-EECSST--TCCEEEEEECSTTCEEEEETTTTE
T ss_pred             CEEEEccC------------------------CceEEEECCCCcEEE-EECCCC--CCCceeEEECCCCCEEEeccCCce
Confidence            99999865                        348899999766543 433322  3445566555 7899999988899


Q ss_pred             EEEEcC
Q 019290          338 VVVIKA  343 (343)
Q Consensus       338 i~~~~~  343 (343)
                      |.++++
T Consensus       248 i~~~d~  253 (299)
T 2z2n_A          248 IGRLTS  253 (299)
T ss_dssp             EEEEET
T ss_pred             EEEECC
Confidence            999874

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.86  E-value=8.5e-19  Score=154.47  Aligned_cols=238  Identities=12%  Similarity=0.126  Sum_probs=168.5

Q ss_pred             cccCC-CCCCCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCC
Q 019290           28 QLQLP-GVVGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPV  106 (343)
Q Consensus        28 ~~~~~-~~~~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~  106 (343)
                      .+.++ ....|.+++++++|+++++...+++|+++|++ +++..+...                  .....|.++++++ 
T Consensus        54 ~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~------------------~~~~~~~~i~~~~-  113 (300)
T 2qc5_A           54 EFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLP------------------QPDSGPYGITEGL-  113 (300)
T ss_dssp             EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECS------------------STTCCEEEEEECS-
T ss_pred             EEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCC------------------CCCCCCccceECC-
Confidence            34455 44679999999999944444457899999988 555554311                  1224688999998 


Q ss_pred             CCeEEEEeCC-CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEE
Q 019290          107 TCDLYIADAY-FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLK  185 (343)
Q Consensus       107 ~~~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~  185 (343)
                      ++++|+++.. .+|++++++ +++..+...   .....++++++|+ +|++|+++..                 .+.|++
T Consensus       114 ~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~---~~~~~~~~i~~d~-~g~l~v~~~~-----------------~~~i~~  171 (300)
T 2qc5_A          114 NGDIWFTQLNGDRIGKLTAD-GTIYEYDLP---NKGSYPAFITLGS-DNALWFTENQ-----------------NNSIGR  171 (300)
T ss_dssp             TTCEEEEETTTTEEEEECTT-SCEEEEECS---STTCCEEEEEECT-TSSEEEEETT-----------------TTEEEE
T ss_pred             CCCEEEEccCCCeEEEECCC-CCEEEccCC---CCCCCceeEEECC-CCCEEEEecC-----------------CCeEEE
Confidence            8899999764 569999998 666544211   1235689999999 5999998864                 467999


Q ss_pred             EeCCCCceEEee--cCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeee-c-CCCCCCceeeCCCCCEE
Q 019290          186 YDPLKKNVTVMY--NGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFA-E-MPRFPDNIKSDSKGEFW  261 (343)
Q Consensus       186 ~d~~~~~~~~~~--~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~-~-~~~~p~~i~~d~~G~lw  261 (343)
                      +++ +++...+.  .....+.++++++++ .+|+++...++|++++.++     ....+. . ....|.++++|++|++|
T Consensus       172 ~~~-~g~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~i~~~~~~g-----~~~~~~~~~~~~~~~~i~~d~~g~l~  244 (300)
T 2qc5_A          172 ITN-TGKLEEYPLPTNAAAPVGITSGNDG-ALWFVEIMGNKIGRITTTG-----EISEYDIPTPNARPHAITAGKNSEIW  244 (300)
T ss_dssp             ECT-TCCEEEEECSSTTCCEEEEEECTTS-SEEEEETTTTEEEEECTTC-----CEEEEECSSTTCCEEEEEECSTTCEE
T ss_pred             ECC-CCcEEEeeCCCCCCCcceEEECCCC-CEEEEccCCCEEEEEcCCC-----cEEEEECCCCCCCceEEEECCCCCEE
Confidence            998 46665443  234568899999887 4899988788999999743     222221 1 12347789999999999


Q ss_pred             EEeccCCCccccccccccccccCCCcccCCCeEEEECCCCCEEEEeeCCCCCccCCceeEEEe-CCEEEEecCCCCeEEE
Q 019290          262 IAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEGNTLNSVSEVQEY-GEYLYTGSSVQPYVVV  340 (343)
Q Consensus       262 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~~~~i~~  340 (343)
                      +++..                        .+.|.+++++++.. .+..+.+  ...+..+..+ +|+||+++. . .|.+
T Consensus       245 v~~~~------------------------~~~i~~~~~~g~~~-~~~~~~~--~~~~~~i~~~~~g~l~v~~~-~-~i~~  295 (300)
T 2qc5_A          245 FTEWG------------------------ANQIGRITNDNTIQ-EYQLQTE--NAEPHGITFGKDGSVWFALK-C-KIGK  295 (300)
T ss_dssp             EEETT------------------------TTEEEEECTTSCEE-EEECCST--TCCCCCEEECTTSCEEEECS-S-EEEE
T ss_pred             EeccC------------------------CCeEEEECCCCcEE-EEECCcc--CCccceeEeCCCCCEEEEcc-C-ceEE
Confidence            99965                        35899999977654 3433322  2335555555 889999998 5 8998


Q ss_pred             EcC
Q 019290          341 IKA  343 (343)
Q Consensus       341 ~~~  343 (343)
                      +++
T Consensus       296 ~~p  298 (300)
T 2qc5_A          296 LNL  298 (300)
T ss_dssp             EEE
T ss_pred             eCC
Confidence            874

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=99.86  E-value=4e-19  Score=165.78  Aligned_cols=242  Identities=14%  Similarity=0.136  Sum_probs=171.3

Q ss_pred             CCCCCceEEEcCC---CCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCe
Q 019290           33 GVVGPESLAFDCN---GEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCD  109 (343)
Q Consensus        33 ~~~~p~~l~~d~~---g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~  109 (343)
                      ++..|.+|++|++   |+ ||+....++|+++++.++.+..+.                    .....|.++++++ +++
T Consensus       137 ~~~~P~gvavd~~s~~g~-Lyv~D~~~~I~~id~~~g~v~~~~--------------------~~~~~P~giavd~-dG~  194 (433)
T 4hw6_A          137 AFDNIWRMMFDPNSNYDD-LYWVGQRDAFRHVDFVNQYVDIKT--------------------TNIGQCADVNFTL-NGD  194 (433)
T ss_dssp             CCSCCCEEEECTTTTTCE-EEEECBTSCEEEEETTTTEEEEEC--------------------CCCSCEEEEEECT-TCC
T ss_pred             ccCCCceEEEccccCCCE-EEEEeCCCCEEEEECCCCEEEEee--------------------cCCCCccEEEECC-CCC
Confidence            5668999999984   66 554433389999999877766553                    2345699999999 666


Q ss_pred             EEEEeCC-----CeEEEEeCCCCeE--EEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCce
Q 019290          110 LYIADAY-----FGLMVVGPNGGQA--QQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGR  182 (343)
Q Consensus       110 l~v~~~~-----~gi~~~d~~~~~~--~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~  182 (343)
                      ||+++..     .+++.++..++..  ..+.      .+..|+++++|+.+|+||+++..                 .++
T Consensus       195 lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~------~~~~P~giavd~~~G~lyv~d~~-----------------~~~  251 (433)
T 4hw6_A          195 MVVVDDQSSDTNTGIYLFTRASGFTERLSLC------NARGAKTCAVHPQNGKIYYTRYH-----------------HAM  251 (433)
T ss_dssp             EEEEECCSCTTSEEEEEECGGGTTCCEEEEE------ECSSBCCCEECTTTCCEEECBTT-----------------CSE
T ss_pred             EEEEcCCCCcccceEEEEECCCCeecccccc------ccCCCCEEEEeCCCCeEEEEECC-----------------CCE
Confidence            9999863     3577777654321  1111      24678999999944999998865                 568


Q ss_pred             EEEEeCCCCce-EEeec--CCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCc-cccccceeeecC-------------
Q 019290          183 LLKYDPLKKNV-TVMYN--GLSFPNGVALSNNNSFLLLAESATLKILRFWLQGE-RTTYTPQLFAEM-------------  245 (343)
Q Consensus       183 v~~~d~~~~~~-~~~~~--~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~-~~~~~~~~~~~~-------------  245 (343)
                      |++++++++.. ..+..  ....+.+++++++++.||+++...++|+++++++. ..+.....++..             
T Consensus       252 V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~  331 (433)
T 4hw6_A          252 ISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTG  331 (433)
T ss_dssp             EEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGG
T ss_pred             EEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccc
Confidence            99999987776 33322  22335679999999999999999999999997642 111111122211             


Q ss_pred             --CCCCCceee---------CCCCCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECCCCCEEEEeeCCC---
Q 019290          246 --PRFPDNIKS---------DSKGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNE---  311 (343)
Q Consensus       246 --~~~p~~i~~---------d~~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~---  311 (343)
                        -..|.++++         |++|+||+++..                        .+.|.+++++|........+.   
T Consensus       332 a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~------------------------n~~I~~~~~~G~v~t~~G~g~~~~  387 (433)
T 4hw6_A          332 ARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRD------------------------SHTVRVLTPEGRVTTYAGRGNSRE  387 (433)
T ss_dssp             SBCSSEEEEEEEECGGGTTSSCCEEEEEEETT------------------------TTEEEEECTTSEEEEEECCCTTCS
T ss_pred             eEEcCCccEEEEccccccccCCCCcEEEEECC------------------------CCEEEEECCCCCEEEEEeCCCCCc
Confidence              124778999         999999999987                        568999999997666553321   


Q ss_pred             -----C-----CccCCceeEEEe--CCEEEEecCCCCeEEEEcC
Q 019290          312 -----G-----NTLNSVSEVQEY--GEYLYTGSSVQPYVVVIKA  343 (343)
Q Consensus       312 -----~-----~~~~~~~~~~~~--~g~l~i~~~~~~~i~~~~~  343 (343)
                           +     ..+..+..+..+  +|+|||+...+++|.++++
T Consensus       388 ~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~  431 (433)
T 4hw6_A          388 WGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAP  431 (433)
T ss_dssp             SCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred             cccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEec
Confidence                 1     124456566555  8999999999999999863

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.85  E-value=2.9e-18  Score=150.98  Aligned_cols=239  Identities=14%  Similarity=0.165  Sum_probs=166.4

Q ss_pred             ccccCC-CCCCCceEEEcCCCCeeEEE-ecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEe
Q 019290           27 QQLQLP-GVVGPESLAFDCNGEGPYVG-VSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFN  104 (343)
Q Consensus        27 ~~~~~~-~~~~p~~l~~d~~g~~l~~~-~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~  104 (343)
                      ..+..+ ....|.+++++++|+ +|++ ..+++|++++++ +++..+..                  ......|.+++++
T Consensus        48 ~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~~~~~------------------~~~~~~~~~i~~~  107 (299)
T 2z2n_A           48 TEYPLPTPDAKVMCLTISSDGE-VWFTENAANKIGRITKK-GIIKEYTL------------------PNPDSAPYGITEG  107 (299)
T ss_dssp             EEEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEEEC------------------SSTTCCEEEEEEC
T ss_pred             EEecCCcccCceeeEEECCCCC-EEEeCCCCCeEEEECCC-CcEEEEeC------------------CCcCCCceeeEEC
Confidence            334444 345799999999999 5554 447889999986 45554431                  0123468899999


Q ss_pred             CCCCeEEEEeCC-CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceE
Q 019290          105 PVTCDLYIADAY-FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRL  183 (343)
Q Consensus       105 ~~~~~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v  183 (343)
                      + +++||+++.. .+|+++|+ +++...+....   ....++++++|+ +|++|+++..                 .++|
T Consensus       108 ~-~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~---~~~~~~~i~~~~-~g~l~v~~~~-----------------~~~i  164 (299)
T 2z2n_A          108 P-NGDIWFTEMNGNRIGRITD-DGKIREYELPN---KGSYPSFITLGS-DNALWFTENQ-----------------NNAI  164 (299)
T ss_dssp             T-TSCEEEEETTTTEEEEECT-TCCEEEEECSS---TTCCEEEEEECT-TSCEEEEETT-----------------TTEE
T ss_pred             C-CCCEEEEecCCceEEEECC-CCCEEEecCCC---CCCCCceEEEcC-CCCEEEEeCC-----------------CCEE
Confidence            8 8899999754 56999999 56665442211   234688999999 5999998754                 4679


Q ss_pred             EEEeCCCCceEEe--ecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeee-c-CCCCCCceeeCCCCC
Q 019290          184 LKYDPLKKNVTVM--YNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFA-E-MPRFPDNIKSDSKGE  259 (343)
Q Consensus       184 ~~~d~~~~~~~~~--~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~-~-~~~~p~~i~~d~~G~  259 (343)
                      +++|+ ++++..+  ......+.++++++++. +|+++...++|++++..+     ....+. . ....|.++++|++|+
T Consensus       165 ~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~g-----~~~~~~~~~~~~~~~~i~~~~~g~  237 (299)
T 2z2n_A          165 GRITE-SGDITEFKIPTPASGPVGITKGNDDA-LWFVEIIGNKIGRITTSG-----EITEFKIPTPNARPHAITAGAGID  237 (299)
T ss_dssp             EEECT-TCCEEEEECSSTTCCEEEEEECTTSS-EEEEETTTTEEEEECTTC-----CEEEEECSSTTCCEEEEEECSTTC
T ss_pred             EEEcC-CCcEEEeeCCCCCCcceeEEECCCCC-EEEEccCCceEEEECCCC-----cEEEEECCCCCCCceeEEECCCCC
Confidence            99998 6776554  22345688999998876 899987788999999732     222221 1 123578899999999


Q ss_pred             EEEEeccCCCccccccccccccccCCCcccCCCeEEEECCCCCEEEEeeCCCCCccCCceeEEEeCCEEEEecCCCCeEE
Q 019290          260 FWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEGNTLNSVSEVQEYGEYLYTGSSVQPYVV  339 (343)
Q Consensus       260 lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~~~~i~  339 (343)
                      +|+++..                        .+.|.++|++++ +..+..+.+  ...+..+...+|+||+++. .+.+.
T Consensus       238 l~v~~~~------------------------~~~i~~~d~~g~-~~~~~~~~~--~~~~~~i~~~~g~l~v~~~-~~~l~  289 (299)
T 2z2n_A          238 LWFTEWG------------------------ANKIGRLTSNNI-IEEYPIQIK--SAEPHGICFDGETIWFAME-CDKIG  289 (299)
T ss_dssp             EEEEETT------------------------TTEEEEEETTTE-EEEEECSSS--SCCEEEEEECSSCEEEEET-TTEEE
T ss_pred             EEEeccC------------------------CceEEEECCCCc-eEEEeCCCC--CCccceEEecCCCEEEEec-CCcEE
Confidence            9999865                        358999999764 344443332  2234433337899999987 67888


Q ss_pred             EEcC
Q 019290          340 VIKA  343 (343)
Q Consensus       340 ~~~~  343 (343)
                      ++++
T Consensus       290 ~~~~  293 (299)
T 2z2n_A          290 KLTL  293 (299)
T ss_dssp             EEEE
T ss_pred             EEEc
Confidence            8863

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=99.84  E-value=2.2e-18  Score=160.77  Aligned_cols=243  Identities=14%  Similarity=0.161  Sum_probs=171.8

Q ss_pred             CCCCCceEEEcC--CCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeE
Q 019290           33 GVVGPESLAFDC--NGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDL  110 (343)
Q Consensus        33 ~~~~p~~l~~d~--~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l  110 (343)
                      ++..|.+|++|+  +|+ +|+....++|.++|++++.+..+.                    .....|.+++++++++.|
T Consensus       135 ~~~~P~~lavdp~~~g~-Lyv~d~~~~I~~id~~~~~v~~~~--------------------~~~~~P~~ia~d~~G~~l  193 (430)
T 3tc9_A          135 GFGGAVWLSFDPKNHNH-LYLVGEQHPTRLIDFEKEYVSTVY--------------------SGLSKVRTICWTHEADSM  193 (430)
T ss_dssp             CCSCCCEEEEETTEEEE-EEEEEBTEEEEEEETTTTEEEEEE--------------------CCCSCEEEEEECTTSSEE
T ss_pred             CCCCCCEEEECCCCCCe-EEEEeCCCcEEEEECCCCEEEEEe--------------------cCCCCcceEEEeCCCCEE
Confidence            567899999997  355 665544489999999887666553                    234568999999944459


Q ss_pred             EEEeCCC-----eEEEEeCCCCeE--EEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceE
Q 019290          111 YIADAYF-----GLMVVGPNGGQA--QQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRL  183 (343)
Q Consensus       111 ~v~~~~~-----gi~~~d~~~~~~--~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v  183 (343)
                      |+++...     .++.++.++...  ..+.      ....++++++|+.+|.||+++..                 .++|
T Consensus       194 yvad~~~~~~~~~v~~~~~~g~~~~~~~l~------~~~~p~giavdp~~g~lyv~d~~-----------------~~~V  250 (430)
T 3tc9_A          194 IITNDQNNNDRPNNYILTRESGFKVITELT------KGQNCNGAETHPINGELYFNSWN-----------------AGQV  250 (430)
T ss_dssp             EEEECCSCTTSEEEEEEEGGGTSCSEEEEE------ECSSCCCEEECTTTCCEEEEETT-----------------TTEE
T ss_pred             EEEeCCCCcccceEEEEeCCCceeeeeeec------cCCCceEEEEeCCCCEEEEEECC-----------------CCEE
Confidence            9998632     467777654321  1221      23578999999944999999976                 5789


Q ss_pred             EEEeCCCCceEEee--cCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCc-cccccceeeecC---------------
Q 019290          184 LKYDPLKKNVTVMY--NGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGE-RTTYTPQLFAEM---------------  245 (343)
Q Consensus       184 ~~~d~~~~~~~~~~--~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~-~~~~~~~~~~~~---------------  245 (343)
                      ++++++++....+.  .....|++++++++++.||+++...++|++++.++. ..+.....++..               
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~  330 (430)
T 3tc9_A          251 FRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKAR  330 (430)
T ss_dssp             EEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCB
T ss_pred             EEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceE
Confidence            99999877653332  233569999999999999999999999999998753 111112222211               


Q ss_pred             CCCCC-ceee--------CCCCCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECCCCCEEEEeeCC------
Q 019290          246 PRFPD-NIKS--------DSKGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGN------  310 (343)
Q Consensus       246 ~~~p~-~i~~--------d~~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~------  310 (343)
                      -..|. ++++        |++|+||+++..                        .+.|.+++++|+........      
T Consensus       331 ~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~------------------------n~~I~~i~~~G~v~~~~g~g~~~~~G  386 (430)
T 3tc9_A          331 MHAPRQGTFVKNPAYKGSSDEYDFYFCDRE------------------------NHCIRILTPQGRVTTFAGRGSNGTSG  386 (430)
T ss_dssp             BSSEEEEEEEECGGGTTSSCCEEEEEEEGG------------------------GTEEEEECTTSEEEEEEECCTTSSSS
T ss_pred             eCCCcceEEEccccccccCCCCeEEEEECC------------------------CcEEEEECCCCcEEEEEeCCCCCCCc
Confidence            11366 6776        567999999987                        46899999999776665431      


Q ss_pred             --CC-----CccCCceeEEEe--CCEEEEecCCCCeEEEEcC
Q 019290          311 --EG-----NTLNSVSEVQEY--GEYLYTGSSVQPYVVVIKA  343 (343)
Q Consensus       311 --~~-----~~~~~~~~~~~~--~g~l~i~~~~~~~i~~~~~  343 (343)
                        ++     ..+..+..+..+  +|+|||+...+++|.++++
T Consensus       387 ~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~  428 (430)
T 3tc9_A          387 YNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY  428 (430)
T ss_dssp             CBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred             ccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence              11     124456666665  5999999999999999863

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.83  E-value=4.7e-18  Score=153.90  Aligned_cols=244  Identities=15%  Similarity=0.171  Sum_probs=162.4

Q ss_pred             CCCceEEEcCCCCeeEEEe---cCC--EEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCe
Q 019290           35 VGPESLAFDCNGEGPYVGV---SDG--RILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCD  109 (343)
Q Consensus        35 ~~p~~l~~d~~g~~l~~~~---~~g--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~  109 (343)
                      ..|++++++++|+ +|++.   .++  +|+.++  +++...|.....             ........|+++++++ +++
T Consensus        17 ~~p~~va~~~~g~-~~v~~~~~~~~~~~l~~~~--~g~~~~~p~~~~-------------~~~~~~~~p~gv~~d~-~g~   79 (343)
T 2qe8_A           17 LAPGNITLTPDGR-LFLSLHQFYQPEMQVAELT--QDGLIPFPPQSG-------------NAIITFDTVLGIKSDG-NGI   79 (343)
T ss_dssp             SCEEEEEECTTSC-EEEEECGGGCCSCSEEEEE--TTEEEESCCCCS-------------SCCCCCSCEEEEEECS-SSE
T ss_pred             CCcceEEECCCCC-EEEEeCCCCCCceEEEEEC--CCCeecCCCccc-------------CcccceeEeeEEEEcC-CCc
Confidence            4799999999999 55442   233  788888  444443321100             0013345799999998 799


Q ss_pred             EEEEeCC------CeEEEEeCCCCeEEEccccc--CCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCc
Q 019290          110 LYIADAY------FGLMVVGPNGGQAQQLASSA--GGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSG  181 (343)
Q Consensus       110 l~v~~~~------~gi~~~d~~~~~~~~~~~~~--~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~  181 (343)
                      ||+++..      ..|+++|++++++.......  ...+...++++++|+.++.+|+++.+..              ..+
T Consensus        80 L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~--------------~~~  145 (343)
T 2qe8_A           80 VWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPD--------------DKA  145 (343)
T ss_dssp             EEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSG--------------GGC
T ss_pred             EEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccC--------------CCC
Confidence            9999865      46999999988854332221  1223356899999964489999987310              145


Q ss_pred             eEEEEeCCCCceEEeecC------------------------------CCCcceeEEecCCCEEEEEEcCCCeEEEEEcc
Q 019290          182 RLLKYDPLKKNVTVMYNG------------------------------LSFPNGVALSNNNSFLLLAESATLKILRFWLQ  231 (343)
Q Consensus       182 ~v~~~d~~~~~~~~~~~~------------------------------~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~  231 (343)
                      .|+++|+++++..+....                              ...++++++++|++.||+++....+|++++.+
T Consensus       146 ~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~  225 (343)
T 2qe8_A          146 ALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSA  225 (343)
T ss_dssp             EEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHH
T ss_pred             eEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHH
Confidence            677777765554443211                              02468999999999999999888899999854


Q ss_pred             C--ccccccc------eeeecCCCCCCceeeCCCCCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECC-CCC
Q 019290          232 G--ERTTYTP------QLFAEMPRFPDNIKSDSKGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDV-NGN  302 (343)
Q Consensus       232 ~--~~~~~~~------~~~~~~~~~p~~i~~d~~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~  302 (343)
                      .  +..+.+.      ... ...+.|+++++|++|++|++...                        .+.|.++|+ +|+
T Consensus       226 ~~~~~~~~~~~~~~~~~~~-g~~g~pdgia~d~~G~l~va~~~------------------------~~~V~~~d~~~G~  280 (343)
T 2qe8_A          226 DLSNLQLTDAELGSKIERY-SEKPICDGISIDKDHNIYVGDLA------------------------HSAIGVITSADRA  280 (343)
T ss_dssp             HHTCTTCCHHHHHTTCEEE-EECCSCSCEEECTTCCEEEEEGG------------------------GTEEEEEETTTTE
T ss_pred             HhcCCCCChhhhhcceEec-ccCCCCceEEECCCCCEEEEccC------------------------CCeEEEEECCCCC
Confidence            1  1000111      111 12346999999999999999987                        458999999 787


Q ss_pred             EEEEeeCCCCCccCCceeEEEe-CCEEEEecCCCCe
Q 019290          303 VVDVLDGNEGNTLNSVSEVQEY-GEYLYTGSSVQPY  337 (343)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~~~~  337 (343)
                      .......+   ....+..+..+ +|+||+++...++
T Consensus       281 ~~~~~~~~---~~~~p~~va~~~~g~l~v~~~~~~~  313 (343)
T 2qe8_A          281 YKLLVTDE---KLSWTDSFNFGSDGYLYFDCNQLHH  313 (343)
T ss_dssp             EEEEEECG---GGSCEEEEEECTTSCEEEEECCGGG
T ss_pred             EEEEEECC---ceecCCeeEECCCCcEEEEeCcccc
Confidence            65555433   24456666654 7899999875443

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=99.82  E-value=3.1e-18  Score=155.50  Aligned_cols=209  Identities=16%  Similarity=0.165  Sum_probs=155.8

Q ss_pred             CCCCCCceEEEcC-CCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeE
Q 019290           32 PGVVGPESLAFDC-NGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDL  110 (343)
Q Consensus        32 ~~~~~p~~l~~d~-~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l  110 (343)
                      +++..|.++++|+ ++.++|++..+++|++++++++....+..                   .....|.|+++++.+++|
T Consensus        70 ~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~-------------------~~~~~p~glavd~~~g~l  130 (349)
T 3v64_C           70 NNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS-------------------TGLESPGGLAVDWVHDKL  130 (349)
T ss_dssp             CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-------------------SSCSCCCEEEEETTTTEE
T ss_pred             cCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEe-------------------CCCCCccEEEEecCCCeE
Confidence            4556799999996 46666788889999999998866554421                   233468999999768899


Q ss_pred             EEEeCCC-eEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCC
Q 019290          111 YIADAYF-GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPL  189 (343)
Q Consensus       111 ~v~~~~~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~  189 (343)
                      |+++... .|.++++++...+.+..    .....|+++++|+.+|.||+++...                .++|++++++
T Consensus       131 y~~d~~~~~I~~~~~dG~~~~~l~~----~~l~~P~~iavdp~~g~ly~td~~~----------------~~~I~r~~~d  190 (349)
T 3v64_C          131 YWTDSGTSRIEVANLDGAHRKVLLW----QSLEKPRAIALHPMEGTIYWTDWGN----------------TPRIEASSMD  190 (349)
T ss_dssp             EEEETTTTEEEEEETTSCSCEEEEC----TTCSCEEEEEEETTTTEEEEEECSS----------------SCEEEEEETT
T ss_pred             EEEcCCCCeEEEEcCCCCceEEEEe----CCCCCcceEEEecCcCeEEEeccCC----------------CCEEEEEeCC
Confidence            9998764 59999998654443322    1235689999998568999998751                3689999988


Q ss_pred             CCceEEee-cCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeec-CCCCCCceeeCCCCCEEEEeccC
Q 019290          190 KKNVTVMY-NGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAE-MPRFPDNIKSDSKGEFWIAMNSA  267 (343)
Q Consensus       190 ~~~~~~~~-~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~G~lwi~~~~~  267 (343)
                      +...+.+. .++..|++++++++++.|||+++..++|+++++++.    ..+.+.. ....|++++++ +|++|++++. 
T Consensus       191 G~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~----~~~~~~~~~~~~P~giav~-~~~ly~td~~-  264 (349)
T 3v64_C          191 GSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS----HRKAVISQGLPHPFAITVF-EDSLYWTDWH-  264 (349)
T ss_dssp             SCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC----SCEEEECSSCSSEEEEEEE-TTEEEEEETT-
T ss_pred             CCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCC----ceEEEEeCCCCCceEEEEE-CCEEEEecCC-
Confidence            65555544 457789999999989999999999999999999873    3333332 23469999995 5789999987 


Q ss_pred             CCccccccccccccccCCCcccCCCeEEEECC-CCCEEEEee
Q 019290          268 RGKIESNKKTAFCEETAKPWFLRDPVGVKFDV-NGNVVDVLD  308 (343)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~  308 (343)
                                             .+.|.++++ +|+....+.
T Consensus       265 -----------------------~~~V~~~~~~~G~~~~~i~  283 (349)
T 3v64_C          265 -----------------------TKSINSANKFTGKNQEIIR  283 (349)
T ss_dssp             -----------------------TTEEEEEETTTCCSCEEEE
T ss_pred             -----------------------CCeEEEEEccCCCccEEec
Confidence                                   457888884 666544443

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.82  E-value=9.2e-18  Score=151.01  Aligned_cols=245  Identities=18%  Similarity=0.228  Sum_probs=164.9

Q ss_pred             CCCCCceEEEcCCCCeeEEEecC------------------------CEEEEEEcCCCCeEEeeecCCCccccccCCCCC
Q 019290           33 GVVGPESLAFDCNGEGPYVGVSD------------------------GRILKWKAANSGWTEFATTAPHRAREICDGSTN   88 (343)
Q Consensus        33 ~~~~p~~l~~d~~g~~l~~~~~~------------------------g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (343)
                      .+..|.+|+++++|++++++..+                        +.|+++|+.++++.....               
T Consensus        22 ~l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~---------------   86 (329)
T 3fvz_A           22 LPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSG---------------   86 (329)
T ss_dssp             CCSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEEC---------------
T ss_pred             ecCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccC---------------
Confidence            34469999999999944454444                        369999998766543221               


Q ss_pred             cccCCCcCCeeeEEEeCCCCeEEEEeCCC-eEEEEeCCCC--eEEEccccc----CCCCccCcceeEEeCCCCeEEEEeC
Q 019290           89 TTLEPLCGRPLGIKFNPVTCDLYIADAYF-GLMVVGPNGG--QAQQLASSA----GGIPFRFTNDLDIDPNTGIVYFTDS  161 (343)
Q Consensus        89 ~~~~~~~~~p~gi~~~~~~~~l~v~~~~~-gi~~~d~~~~--~~~~~~~~~----~~~~~~~~~~i~~d~~dg~l~v~~~  161 (343)
                         ......|.++++++ +++||+++..+ .|+++++++.  .+..+....    ....+..|+++++++.+|++|+++.
T Consensus        87 ---~~~~~~p~gia~d~-~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~  162 (329)
T 3fvz_A           87 ---KNLFYLPHGLSIDT-DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDG  162 (329)
T ss_dssp             ---TTTCSSEEEEEECT-TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEEC
T ss_pred             ---CCccCCceEEEECC-CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeC
Confidence               12345799999998 88899998764 4999998755  233332110    1223457999999983499999985


Q ss_pred             -CcccccccceeeeeecCCCceEEEEeCCCCceEEeec----------CCCCcceeEEecCCCEEEEEEcCCCeEEEEEc
Q 019290          162 -SIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYN----------GLSFPNGVALSNNNSFLLLAESATLKILRFWL  230 (343)
Q Consensus       162 -~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~----------~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~  230 (343)
                       .                 .++|.++++++.....+..          .+..|.+++++++++.+|+++..+++|.+|+.
T Consensus       163 ~~-----------------~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~  225 (329)
T 3fvz_A          163 YC-----------------NSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKT  225 (329)
T ss_dssp             SS-----------------CCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             CC-----------------CCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEEC
Confidence             4                 4679999976433333321          23459999999997789999999999999998


Q ss_pred             c-Cccccccceeeec--CCCCCC------ceeeCCCCCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECC-C
Q 019290          231 Q-GERTTYTPQLFAE--MPRFPD------NIKSDSKGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDV-N  300 (343)
Q Consensus       231 ~-~~~~~~~~~~~~~--~~~~p~------~i~~d~~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~-~  300 (343)
                      + +..    ...+..  ....+.      +++++.+|++|+++..                        ...+..++. +
T Consensus       226 ~~G~~----~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~------------------------~~~v~~~~~~~  277 (329)
T 3fvz_A          226 DTKEF----VREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQE------------------------PVQGFVMNFSS  277 (329)
T ss_dssp             TTCCE----EEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSC------------------------CCCEEEEETTT
T ss_pred             CCCcE----EEEEeccccCCCcceeeecCCEEEEeCCCEEeccCC------------------------CcEEEEEEcCC
Confidence            7 321    112211  111122      4455556666666544                        347788884 6


Q ss_pred             CCEEEEeeCCCCCccCCceeEEEe-CCEEEEecCCCCeEEEEc
Q 019290          301 GNVVDVLDGNEGNTLNSVSEVQEY-GEYLYTGSSVQPYVVVIK  342 (343)
Q Consensus       301 g~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~~~~i~~~~  342 (343)
                      |+.+..+....+ ....+..+..+ +|+||++....++|.+++
T Consensus       278 g~~~~~~~~~~~-~~~~p~~ia~~~dG~lyvad~~~~~I~~~~  319 (329)
T 3fvz_A          278 GEIIDVFKPVRK-HFDMPHDIVASEDGTVYIGDAHTNTVWKFT  319 (329)
T ss_dssp             CCEEEEECCSSS-CCSSEEEEEECTTSEEEEEESSSCCEEEEE
T ss_pred             CeEEEEEcCCCC-ccCCeeEEEECCCCCEEEEECCCCEEEEEe
Confidence            888777652222 34556666655 789999999999999986

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=99.82  E-value=2.6e-17  Score=149.37  Aligned_cols=231  Identities=14%  Similarity=0.165  Sum_probs=167.2

Q ss_pred             ceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCCC
Q 019290           38 ESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYF  117 (343)
Q Consensus        38 ~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~~  117 (343)
                      .+.+.++++. ++++ ....|.++++++.....+.                    .....|.++++++.++.||++|...
T Consensus        37 ~C~~~~~~~~-ll~~-~~~~I~~i~~~g~~~~~~~--------------------~~~~~~~~l~~d~~~~~ly~~D~~~   94 (349)
T 3v64_C           37 SCKALGPEPV-LLFA-NRIDIRQVLPHRSEYTLLL--------------------NNLENAIALDFHHRRELVFWSDVTL   94 (349)
T ss_dssp             CEEESSSCCE-EEEE-CBSCEEEECTTSCCEEEEE--------------------CSCSCEEEEEEETTTTEEEEEETTT
T ss_pred             cccccccCce-eEee-cccceEEEeCCCCeeEEee--------------------cCCCceEEEEEeccccEEEEEeccC
Confidence            4555566554 4444 3456999998876655442                    2344689999997689999998764


Q ss_pred             -eEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEe
Q 019290          118 -GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVM  196 (343)
Q Consensus       118 -gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~  196 (343)
                       .|++++++++..+.+...    ....+.++++|+.+++||+++..                 .+.|.+++.++...+.+
T Consensus        95 ~~I~r~~~~g~~~~~~~~~----~~~~p~glavd~~~g~ly~~d~~-----------------~~~I~~~~~dG~~~~~l  153 (349)
T 3v64_C           95 DRILRANLNGSNVEEVVST----GLESPGGLAVDWVHDKLYWTDSG-----------------TSRIEVANLDGAHRKVL  153 (349)
T ss_dssp             TEEEEEETTSCSCEEEECS----SCSCCCEEEEETTTTEEEEEETT-----------------TTEEEEEETTSCSCEEE
T ss_pred             CceEEEecCCCCceEEEeC----CCCCccEEEEecCCCeEEEEcCC-----------------CCeEEEEcCCCCceEEE
Confidence             499999987765544321    12468899999755899999876                 56899999886554444


Q ss_pred             e-cCCCCcceeEEecCCCEEEEEEcCC-CeEEEEEccCccccccceeeec-CCCCCCceeeCC-CCCEEEEeccCCCccc
Q 019290          197 Y-NGLSFPNGVALSNNNSFLLLAESAT-LKILRFWLQGERTTYTPQLFAE-MPRFPDNIKSDS-KGEFWIAMNSARGKIE  272 (343)
Q Consensus       197 ~-~~~~~~~~i~~~~d~~~lyv~~~~~-~~i~~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~-~G~lwi~~~~~~~~~~  272 (343)
                      . ..+..|+++++++.++.|||++... ++|+++++++.    ..+.+.. .-..|+++++|+ +++||+++..      
T Consensus       154 ~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~----~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~------  223 (349)
T 3v64_C          154 LWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS----GRRIIADTHLFWPNGLTIDYAGRRMYWVDAK------  223 (349)
T ss_dssp             ECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC----SCEESCCSSCSCEEEEEEETTTTEEEEEETT------
T ss_pred             EeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCC----CcEEEEECCCCCcceEEEeCCCCEEEEEECC------
Confidence            4 4678899999999888999999887 99999999873    3333332 223599999996 6789999887      


Q ss_pred             cccccccccccCCCcccCCCeEEEECCCCCEEEEeeCCCCCccCCceeEEEeCCEEEEecCCCCeEEEEc
Q 019290          273 SNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEGNTLNSVSEVQEYGEYLYTGSSVQPYVVVIK  342 (343)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~~~~i~~~~  342 (343)
                                        .+.|.+++.+|.....+... +  ...+..+..++++||++.+..++|.+++
T Consensus       224 ------------------~~~I~~~~~dG~~~~~~~~~-~--~~~P~giav~~~~ly~td~~~~~V~~~~  272 (349)
T 3v64_C          224 ------------------HHVIERANLDGSHRKAVISQ-G--LPHPFAITVFEDSLYWTDWHTKSINSAN  272 (349)
T ss_dssp             ------------------TTEEEEEETTSCSCEEEECS-S--CSSEEEEEEETTEEEEEETTTTEEEEEE
T ss_pred             ------------------CCEEEEEeCCCCceEEEEeC-C--CCCceEEEEECCEEEEecCCCCeEEEEE
Confidence                              45889999887643333211 1  2344455447899999999999999986

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=99.82  E-value=3.8e-18  Score=157.04  Aligned_cols=209  Identities=16%  Similarity=0.168  Sum_probs=156.0

Q ss_pred             CCCCCCceEEEcC-CCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeE
Q 019290           32 PGVVGPESLAFDC-NGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDL  110 (343)
Q Consensus        32 ~~~~~p~~l~~d~-~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l  110 (343)
                      +++..|.++++|+ ++.++|++..+++|++++++++....+..                   .....|.|+++++.+++|
T Consensus       113 ~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~-------------------~~~~~p~glavd~~~g~l  173 (386)
T 3v65_B          113 NNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS-------------------TGLESPGGLAVDWVHDKL  173 (386)
T ss_dssp             CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEEC-------------------SSCSCCCCEEEETTTTEE
T ss_pred             cCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEe-------------------CCCCCccEEEEEeCCCeE
Confidence            3556799999996 46667788899999999998876554421                   233468899999768999


Q ss_pred             EEEeCCC-eEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCC
Q 019290          111 YIADAYF-GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPL  189 (343)
Q Consensus       111 ~v~~~~~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~  189 (343)
                      |+++... .|.++++++...+.+..    ..+..|+++++|+.+|.||+++...                .+.|++++++
T Consensus       174 Y~~d~~~~~I~~~~~dg~~~~~l~~----~~l~~P~giavdp~~g~ly~td~~~----------------~~~I~r~~~d  233 (386)
T 3v65_B          174 YWTDSGTSRIEVANLDGAHRKVLLW----QSLEKPRAIALHPMEGTIYWTDWGN----------------TPRIEASSMD  233 (386)
T ss_dssp             EEEETTTTEEEECBTTSCSCEEEEC----SSCSCEEEEEEETTTTEEEEEECSS----------------SCEEEEEETT
T ss_pred             EEEcCCCCeEEEEeCCCCceEEeec----CCCCCCcEEEEEcCCCeEEEeccCC----------------CCEEEEEeCC
Confidence            9998764 59999988654444322    1235689999997568999998751                3689999988


Q ss_pred             CCceEEee-cCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeec-CCCCCCceeeCCCCCEEEEeccC
Q 019290          190 KKNVTVMY-NGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAE-MPRFPDNIKSDSKGEFWIAMNSA  267 (343)
Q Consensus       190 ~~~~~~~~-~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~G~lwi~~~~~  267 (343)
                      +...+.+. .++..|++++++++++.|||+++..++|+++++++.    ..+.+.. ..+.|++++++ ++.+|++++. 
T Consensus       234 G~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~----~~~~~~~~~~~~P~giav~-~~~ly~td~~-  307 (386)
T 3v65_B          234 GSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS----HRKAVISQGLPHPFAITVF-EDSLYWTDWH-  307 (386)
T ss_dssp             SCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSC----SCEEEECSSCSSEEEEEEE-TTEEEEEETT-
T ss_pred             CCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCC----eeEEEEECCCCCceEEEEE-CCEEEEeeCC-
Confidence            65555444 457789999999988999999999999999998872    3333332 33469999995 5679999887 


Q ss_pred             CCccccccccccccccCCCcccCCCeEEEEC-CCCCEEEEee
Q 019290          268 RGKIESNKKTAFCEETAKPWFLRDPVGVKFD-VNGNVVDVLD  308 (343)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~g~~~~~~~  308 (343)
                                             .+.|.+++ .+|+....+.
T Consensus       308 -----------------------~~~V~~~~~~~G~~~~~i~  326 (386)
T 3v65_B          308 -----------------------TKSINSANKFTGKNQEIIR  326 (386)
T ss_dssp             -----------------------TTEEEEEETTTCCSCEEEE
T ss_pred             -----------------------CCeEEEEECCCCcceEEEc
Confidence                                   45888998 4676555544

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.81  E-value=1.8e-17  Score=144.57  Aligned_cols=207  Identities=17%  Similarity=0.202  Sum_probs=151.7

Q ss_pred             CCCceEEEcCC-CCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEE
Q 019290           35 VGPESLAFDCN-GEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIA  113 (343)
Q Consensus        35 ~~p~~l~~d~~-g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~  113 (343)
                      ..|+++++|++ ++++|++..+++|++++++++....+.                   ......|.++++++.++.||++
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~-------------------~~~~~~p~~ia~d~~~~~lyv~   96 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTII-------------------RQDLGSPEGIALDHLGRTIFWT   96 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEE-------------------CTTCCCEEEEEEETTTTEEEEE
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEE-------------------ECCCCCccEEEEEecCCeEEEE
Confidence            36899999986 455557777899999999876544332                   1223578999999867899999


Q ss_pred             eCCC-eEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCc
Q 019290          114 DAYF-GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKN  192 (343)
Q Consensus       114 ~~~~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~  192 (343)
                      +... .|.+++.++...+.+...    ....|+++++|+.+++||+++...               ..+.|++++.++..
T Consensus        97 d~~~~~I~~~~~~g~~~~~~~~~----~~~~P~~i~vd~~~g~lyv~~~~~---------------~~~~I~~~~~dg~~  157 (267)
T 1npe_A           97 DSQLDRIEVAKMDGTQRRVLFDT----GLVNPRGIVTDPVRGNLYWTDWNR---------------DNPKIETSHMDGTN  157 (267)
T ss_dssp             ETTTTEEEEEETTSCSCEEEECS----SCSSEEEEEEETTTTEEEEEECCS---------------SSCEEEEEETTSCC
T ss_pred             ECCCCEEEEEEcCCCCEEEEEEC----CCCCccEEEEeeCCCEEEEEECCC---------------CCcEEEEEecCCCC
Confidence            8764 599999875443333221    135689999998448999988541               13579999887544


Q ss_pred             eEEee-cCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEeccCCCcc
Q 019290          193 VTVMY-NGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNSARGKI  271 (343)
Q Consensus       193 ~~~~~-~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~~~~~~~  271 (343)
                      .+.+. ..+..|++++++++++.|||++...++|+++++++.    ....+......|.+++.| ++++|+++..     
T Consensus       158 ~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~----~~~~~~~~~~~P~gi~~d-~~~lyva~~~-----  227 (267)
T 1npe_A          158 RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP----GRRKVLEGLQYPFAVTSY-GKNLYYTDWK-----  227 (267)
T ss_dssp             CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE----EEEEEEECCCSEEEEEEE-TTEEEEEETT-----
T ss_pred             cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCC----ceEEEecCCCCceEEEEe-CCEEEEEECC-----
Confidence            44443 456789999999999999999999999999998762    222333333468999998 6889999887     


Q ss_pred             ccccccccccccCCCcccCCCeEEEECCC-CCEEEEee
Q 019290          272 ESNKKTAFCEETAKPWFLRDPVGVKFDVN-GNVVDVLD  308 (343)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~v~~~d~~-g~~~~~~~  308 (343)
                                         .+.|.++|++ |+.+..+.
T Consensus       228 -------------------~~~v~~~d~~~g~~~~~i~  246 (267)
T 1npe_A          228 -------------------TNSVIAMDLAISKEMDTFH  246 (267)
T ss_dssp             -------------------TTEEEEEETTTTEEEEEEC
T ss_pred             -------------------CCeEEEEeCCCCCceEEEc
Confidence                               4589999985 77777665

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=99.81  E-value=1.4e-17  Score=149.10  Aligned_cols=192  Identities=15%  Similarity=0.187  Sum_probs=140.7

Q ss_pred             CCCCCCCceEEEcCC-CCeeEEEecCCEEEEEEcCC----CCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeC
Q 019290           31 LPGVVGPESLAFDCN-GEGPYVGVSDGRILKWKAAN----SGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNP  105 (343)
Q Consensus        31 ~~~~~~p~~l~~d~~-g~~l~~~~~~g~i~~~d~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~  105 (343)
                      ++.+..|+++++|++ +.++|++..+++|+++++++    .....+.                   ......|.|+++++
T Consensus        26 ~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~-------------------~~~~~~p~glavd~   86 (316)
T 1ijq_A           26 IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-------------------SRDIQAPDGLAVDW   86 (316)
T ss_dssp             ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEE-------------------CSSCSCCCEEEEET
T ss_pred             hcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEE-------------------eCCCCCcCEEEEee
Confidence            355678999999986 56667888889999999876    2222221                   12234689999997


Q ss_pred             CCCeEEEEeCCC-eEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEE
Q 019290          106 VTCDLYIADAYF-GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLL  184 (343)
Q Consensus       106 ~~~~l~v~~~~~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~  184 (343)
                      .+++||+++... .|.++++++...+.+...    ....|+++++|+.+|.||+++...                .++|+
T Consensus        87 ~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~----~~~~P~~iavdp~~g~ly~~d~~~----------------~~~I~  146 (316)
T 1ijq_A           87 IHSNIYWTDSVLGTVSVADTKGVKRKTLFRE----NGSKPRAIVVDPVHGFMYWTDWGT----------------PAKIK  146 (316)
T ss_dssp             TTTEEEEEETTTTEEEEEETTSSSEEEEEEC----TTCCEEEEEEETTTTEEEEEECSS----------------SCEEE
T ss_pred             cCCeEEEEECCCCEEEEEeCCCCceEEEEEC----CCCCcceEEeCCCCCEEEEEccCC----------------CCeEE
Confidence            578999998764 599999986655544321    235689999997568999988641                36899


Q ss_pred             EEeCCCCceEEee-cCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecC---CCCCCceeeCCCCCE
Q 019290          185 KYDPLKKNVTVMY-NGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEM---PRFPDNIKSDSKGEF  260 (343)
Q Consensus       185 ~~d~~~~~~~~~~-~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~---~~~p~~i~~d~~G~l  260 (343)
                      ++++++...+.+. ..+..|++++++++++.|||+++..++|+++++++    ...+.+...   ...|.++++|. |++
T Consensus       147 ~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg----~~~~~~~~~~~~~~~P~giav~~-~~l  221 (316)
T 1ijq_A          147 KGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG----GNRKTILEDEKRLAHPFSLAVFE-DKV  221 (316)
T ss_dssp             EEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS----CSCEEEEECTTTTSSEEEEEEET-TEE
T ss_pred             EEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCC----CceEEEeecCCccCCcEEEEEEC-CEE
Confidence            9998755544443 45778999999999999999999999999999987    333444331   24689999984 789


Q ss_pred             EEEecc
Q 019290          261 WIAMNS  266 (343)
Q Consensus       261 wi~~~~  266 (343)
                      |++++.
T Consensus       222 y~~d~~  227 (316)
T 1ijq_A          222 FWTDII  227 (316)
T ss_dssp             EEEETT
T ss_pred             EEEECC
Confidence            999987

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=99.80  E-value=8e-17  Score=148.17  Aligned_cols=230  Identities=14%  Similarity=0.167  Sum_probs=166.3

Q ss_pred             eEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCCCe
Q 019290           39 SLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFG  118 (343)
Q Consensus        39 ~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~~g  118 (343)
                      +.+.++++. ++++ ....|.++++.++....+.                    .....|.++++++.++.||+++...+
T Consensus        81 C~~~~~~~~-l~~~-~~~~I~~i~~~~~~~~~~~--------------------~~~~~~~gl~~d~~~~~ly~~D~~~~  138 (386)
T 3v65_B           81 CKALGPEPV-LLFA-NRIDIRQVLPHRSEYTLLL--------------------NNLENAIALDFHHRRELVFWSDVTLD  138 (386)
T ss_dssp             EEECSSCCE-EEEE-CBSCEEEECTTSCCCEEEE--------------------CSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred             ECCccccce-eEee-cCccceeeccCCCcEEEEe--------------------cCCCccEEEEEecCCCeEEEEeCCCC
Confidence            444455444 3433 3456999998876655443                    23456899999976899999987654


Q ss_pred             -EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEee
Q 019290          119 -LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMY  197 (343)
Q Consensus       119 -i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~  197 (343)
                       |++++++++..+.+...    ....+.++++|+.+++||+++..                 ..+|.++++++...+.+.
T Consensus       139 ~I~r~~~~g~~~~~~~~~----~~~~p~glavd~~~g~lY~~d~~-----------------~~~I~~~~~dg~~~~~l~  197 (386)
T 3v65_B          139 RILRANLNGSNVEEVVST----GLESPGGLAVDWVHDKLYWTDSG-----------------TSRIEVANLDGAHRKVLL  197 (386)
T ss_dssp             EEEEEETTSCCEEEEECS----SCSCCCCEEEETTTTEEEEEETT-----------------TTEEEECBTTSCSCEEEE
T ss_pred             cEEEEecCCCCcEEEEeC----CCCCccEEEEEeCCCeEEEEcCC-----------------CCeEEEEeCCCCceEEee
Confidence             99999987766554321    12468999999755899999876                 567999998765544443


Q ss_pred             -cCCCCcceeEEecCCCEEEEEEcCC-CeEEEEEccCccccccceeeec-CCCCCCceeeCC-CCCEEEEeccCCCcccc
Q 019290          198 -NGLSFPNGVALSNNNSFLLLAESAT-LKILRFWLQGERTTYTPQLFAE-MPRFPDNIKSDS-KGEFWIAMNSARGKIES  273 (343)
Q Consensus       198 -~~~~~~~~i~~~~d~~~lyv~~~~~-~~i~~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~-~G~lwi~~~~~~~~~~~  273 (343)
                       ..+..|+++++++.++.|||++... ++|+++++++.    ..+.+.. .-..|.++++|+ +++||+++..       
T Consensus       198 ~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~----~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~-------  266 (386)
T 3v65_B          198 WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS----GRRIIADTHLFWPNGLTIDYAGRRMYWVDAK-------  266 (386)
T ss_dssp             CSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC----SCEEEECSSCSCEEEEEEEGGGTEEEEEETT-------
T ss_pred             cCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCC----CcEEEEECCCCCeeeEEEeCCCCEEEEEECC-------
Confidence             4568899999999889999999887 89999998873    3333332 223599999995 6799999876       


Q ss_pred             ccccccccccCCCcccCCCeEEEECCCCCEEEEeeCCCCCccCCceeEEEeCCEEEEecCCCCeEEEEc
Q 019290          274 NKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEGNTLNSVSEVQEYGEYLYTGSSVQPYVVVIK  342 (343)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~~~~i~~~~  342 (343)
                                       .+.|.+++.+|.....+... +  ...+..+..++++||++.+..++|.+++
T Consensus       267 -----------------~~~I~~~d~dG~~~~~~~~~-~--~~~P~giav~~~~ly~td~~~~~V~~~~  315 (386)
T 3v65_B          267 -----------------HHVIERANLDGSHRKAVISQ-G--LPHPFAITVFEDSLYWTDWHTKSINSAN  315 (386)
T ss_dssp             -----------------TTEEEEECTTSCSCEEEECS-S--CSSEEEEEEETTEEEEEETTTTEEEEEE
T ss_pred             -----------------CCEEEEEeCCCCeeEEEEEC-C--CCCceEEEEECCEEEEeeCCCCeEEEEE
Confidence                             45889999887643333221 1  2344555558899999999999999986

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=99.80  E-value=1.1e-16  Score=143.33  Aligned_cols=224  Identities=15%  Similarity=0.167  Sum_probs=157.4

Q ss_pred             eEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCCC-eEEEEeCCC-
Q 019290           49 PYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYF-GLMVVGPNG-  126 (343)
Q Consensus        49 l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~~-gi~~~d~~~-  126 (343)
                      |+++. ...|.++|.++.+...+.                    .....|.++++++.++.||+++... .|+++++++ 
T Consensus         4 ll~~~-~~~I~~i~~~~~~~~~~~--------------------~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~   62 (316)
T 1ijq_A            4 LFFTN-RHEVRKMTLDRSEYTSLI--------------------PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRA   62 (316)
T ss_dssp             EEEEC-BSSEEEEETTSCCCEEEE--------------------CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC---
T ss_pred             EEEEC-CCeEEEEECCCcceEehh--------------------cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCC
Confidence            34433 345899998876654432                    2345789999998678999998764 499999886 


Q ss_pred             ---CeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEee-cCCCC
Q 019290          127 ---GQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMY-NGLSF  202 (343)
Q Consensus       127 ---~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~-~~~~~  202 (343)
                         ...+.+..    .....+.++++|+.+++||+++..                 .+.|.++++++...+.+. ..+..
T Consensus        63 ~~~~~~~~~~~----~~~~~p~glavd~~~~~ly~~d~~-----------------~~~I~~~~~~g~~~~~~~~~~~~~  121 (316)
T 1ijq_A           63 HGVSSYDTVIS----RDIQAPDGLAVDWIHSNIYWTDSV-----------------LGTVSVADTKGVKRKTLFRENGSK  121 (316)
T ss_dssp             -----CEEEEC----SSCSCCCEEEEETTTTEEEEEETT-----------------TTEEEEEETTSSSEEEEEECTTCC
T ss_pred             CCCcccEEEEe----CCCCCcCEEEEeecCCeEEEEECC-----------------CCEEEEEeCCCCceEEEEECCCCC
Confidence               22222211    123568999999645899999875                 568999998865555544 36778


Q ss_pred             cceeEEecCCCEEEEEEcCC-CeEEEEEccCccccccceeeec-CCCCCCceeeCC-CCCEEEEeccCCCcccccccccc
Q 019290          203 PNGVALSNNNSFLLLAESAT-LKILRFWLQGERTTYTPQLFAE-MPRFPDNIKSDS-KGEFWIAMNSARGKIESNKKTAF  279 (343)
Q Consensus       203 ~~~i~~~~d~~~lyv~~~~~-~~i~~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~-~G~lwi~~~~~~~~~~~~~~~~~  279 (343)
                      |++++++++++.|||++... ++|+++++++.    ..+.+.. .-..|.++++|+ +++||+++..             
T Consensus       122 P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~----~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~-------------  184 (316)
T 1ijq_A          122 PRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV----DIYSLVTENIQWPNGITLDLLSGRLYWVDSK-------------  184 (316)
T ss_dssp             EEEEEEETTTTEEEEEECSSSCEEEEEETTSC----CEEEEECSSCSCEEEEEEETTTTEEEEEETT-------------
T ss_pred             cceEEeCCCCCEEEEEccCCCCeEEEEcCCCC----CeEEEEECCCCCceEEEEeccCCEEEEEECC-------------
Confidence            99999999888999999765 89999998873    3333332 224699999997 4689999876             


Q ss_pred             ccccCCCcccCCCeEEEECCCCCEEEEeeCCCCCccCCceeEEEeCCEEEEecCCCCeEEEEcC
Q 019290          280 CEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEGNTLNSVSEVQEYGEYLYTGSSVQPYVVVIKA  343 (343)
Q Consensus       280 ~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~~~~i~~~~~  343 (343)
                                 .+.|.++|.+|+....+..... ....+..+..++++||++....++|.++++
T Consensus       185 -----------~~~I~~~d~dg~~~~~~~~~~~-~~~~P~giav~~~~ly~~d~~~~~V~~~~~  236 (316)
T 1ijq_A          185 -----------LHSISSIDVNGGNRKTILEDEK-RLAHPFSLAVFEDKVFWTDIINEAIFSANR  236 (316)
T ss_dssp             -----------TTEEEEEETTSCSCEEEEECTT-TTSSEEEEEEETTEEEEEETTTTEEEEEET
T ss_pred             -----------CCeEEEEecCCCceEEEeecCC-ccCCcEEEEEECCEEEEEECCCCeEEEEeC
Confidence                       4588999998764444322111 123445555578999999999999999863

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=99.80  E-value=3.6e-17  Score=159.11  Aligned_cols=196  Identities=18%  Similarity=0.158  Sum_probs=152.4

Q ss_pred             ccccCCCCCCCceEEEcCC-CCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeC
Q 019290           27 QQLQLPGVVGPESLAFDCN-GEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNP  105 (343)
Q Consensus        27 ~~~~~~~~~~p~~l~~d~~-g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~  105 (343)
                      ..++++++..|.+|++|++ +.++|++..+++|+++++++.....+..                   .....|.||+++.
T Consensus        29 ~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~-------------------~g~~~P~GlAvD~   89 (628)
T 4a0p_A           29 VAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVE-------------------FGLDYPEGMAVDW   89 (628)
T ss_dssp             EECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-------------------SSCSCCCEEEEET
T ss_pred             eEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEe-------------------CCCCCcceEEEEe
Confidence            3445667778999999985 5666688889999999998765554421                   2234689999998


Q ss_pred             CCCeEEEEeCCC-eEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEE
Q 019290          106 VTCDLYIADAYF-GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLL  184 (343)
Q Consensus       106 ~~~~l~v~~~~~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~  184 (343)
                      ..++||+++... .|.++++++...+.+..    ..+..|++|++||.+|.||+++.+.                ..+|+
T Consensus        90 ~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~----~~l~~P~~iavdp~~G~lY~tD~g~----------------~~~I~  149 (628)
T 4a0p_A           90 LGKNLYWADTGTNRIEVSKLDGQHRQVLVW----KDLDSPRALALDPAEGFMYWTEWGG----------------KPKID  149 (628)
T ss_dssp             TTTEEEEEETTTTEEEEEETTSTTCEEEEC----SSCCCEEEEEEETTTTEEEEEECSS----------------SCEEE
T ss_pred             CCCEEEEEECCCCEEEEEecCCCcEEEEEe----CCCCCcccEEEccCCCeEEEeCCCC----------------CCEEE
Confidence            688999998765 49999998655444432    1235689999998569999998641                46899


Q ss_pred             EEeCCCCceEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEe
Q 019290          185 KYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAM  264 (343)
Q Consensus       185 ~~d~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~  264 (343)
                      +.++++...+.+...+..|+|++++++++.|||++...+.|+++++++.    ..+++...-..|.+++++. +++|+++
T Consensus       150 r~~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~----~~~v~~~~l~~P~glav~~-~~ly~tD  224 (628)
T 4a0p_A          150 RAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGL----NREVIADDLPHPFGLTQYQ-DYIYWTD  224 (628)
T ss_dssp             EEETTSCSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSC----SCEEEEECCSCEEEEEEET-TEEEEEE
T ss_pred             EEeCCCCceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCC----ceEEeeccCCCceEEEEEC-CEEEEec
Confidence            9999877777777788899999999999999999999999999999873    3344444334689999986 7899999


Q ss_pred             cc
Q 019290          265 NS  266 (343)
Q Consensus       265 ~~  266 (343)
                      +.
T Consensus       225 ~~  226 (628)
T 4a0p_A          225 WS  226 (628)
T ss_dssp             TT
T ss_pred             CC
Confidence            86

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.79  E-value=9.3e-17  Score=140.00  Aligned_cols=229  Identities=15%  Similarity=0.180  Sum_probs=157.8

Q ss_pred             CeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCCC-eEEEEeCC
Q 019290           47 EGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYF-GLMVVGPN  125 (343)
Q Consensus        47 ~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~~-gi~~~d~~  125 (343)
                      ..||++. .++|++++.+++....+...              .........|++++++++++.||+++... .|++++++
T Consensus         2 ~~l~~~~-~~~I~~~~~~g~~~~~~~~~--------------~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~   66 (267)
T 1npe_A            2 THLLFAQ-TGKIERLPLERNTMKKTEAK--------------AFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLH   66 (267)
T ss_dssp             EEEEEEE-EEEEEEEEESSSCBCGGGCE--------------EEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESS
T ss_pred             cEEEEEc-CCeEEEEEecCcccccccce--------------eeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecC
Confidence            3455544 35899999877543210000              00001123578999998678999998765 49999998


Q ss_pred             CCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEee-cCCCCcc
Q 019290          126 GGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMY-NGLSFPN  204 (343)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~-~~~~~~~  204 (343)
                      ++....+...    ....++++++|+.++.+|+++..                 .+.|++++.++...+.+. .++..|+
T Consensus        67 g~~~~~~~~~----~~~~p~~ia~d~~~~~lyv~d~~-----------------~~~I~~~~~~g~~~~~~~~~~~~~P~  125 (267)
T 1npe_A           67 GGEPTTIIRQ----DLGSPEGIALDHLGRTIFWTDSQ-----------------LDRIEVAKMDGTQRRVLFDTGLVNPR  125 (267)
T ss_dssp             SCCCEEEECT----TCCCEEEEEEETTTTEEEEEETT-----------------TTEEEEEETTSCSCEEEECSSCSSEE
T ss_pred             CCCcEEEEEC----CCCCccEEEEEecCCeEEEEECC-----------------CCEEEEEEcCCCCEEEEEECCCCCcc
Confidence            7655443221    23568999999844799999875                 568999998755444443 3457899


Q ss_pred             eeEEecCCCEEEEEEcC--CCeEEEEEccCccccccceeeec-CCCCCCceeeCCC-CCEEEEeccCCCccccccccccc
Q 019290          205 GVALSNNNSFLLLAESA--TLKILRFWLQGERTTYTPQLFAE-MPRFPDNIKSDSK-GEFWIAMNSARGKIESNKKTAFC  280 (343)
Q Consensus       205 ~i~~~~d~~~lyv~~~~--~~~i~~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~-G~lwi~~~~~~~~~~~~~~~~~~  280 (343)
                      +++++++++.|||++..  .++|+++++++.    ..+.+.. ....|.++++|++ ++||+++..              
T Consensus       126 ~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~----~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~--------------  187 (267)
T 1npe_A          126 GIVTDPVRGNLYWTDWNRDNPKIETSHMDGT----NRRILAQDNLGLPNGLTFDAFSSQLCWVDAG--------------  187 (267)
T ss_dssp             EEEEETTTTEEEEEECCSSSCEEEEEETTSC----CCEEEECTTCSCEEEEEEETTTTEEEEEETT--------------
T ss_pred             EEEEeeCCCEEEEEECCCCCcEEEEEecCCC----CcEEEEECCCCCCcEEEEcCCCCEEEEEECC--------------
Confidence            99999988899999876  579999998763    2233322 2235999999996 589999877              


Q ss_pred             cccCCCcccCCCeEEEECCCCCEEEEeeCCCCCccCCceeEEEeCCEEEEecCCCCeEEEEcC
Q 019290          281 EETAKPWFLRDPVGVKFDVNGNVVDVLDGNEGNTLNSVSEVQEYGEYLYTGSSVQPYVVVIKA  343 (343)
Q Consensus       281 ~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~~~~i~~~~~  343 (343)
                                .+.|.++++++.....+..  +  ...+..+..++++||++...+++|.++++
T Consensus       188 ----------~~~I~~~~~~g~~~~~~~~--~--~~~P~gi~~d~~~lyva~~~~~~v~~~d~  236 (267)
T 1npe_A          188 ----------THRAECLNPAQPGRRKVLE--G--LQYPFAVTSYGKNLYYTDWKTNSVIAMDL  236 (267)
T ss_dssp             ----------TTEEEEEETTEEEEEEEEE--C--CCSEEEEEEETTEEEEEETTTTEEEEEET
T ss_pred             ----------CCEEEEEecCCCceEEEec--C--CCCceEEEEeCCEEEEEECCCCeEEEEeC
Confidence                      4588999998754433321  1  12344555678999999999999999874

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=99.78  E-value=2.1e-17  Score=147.95  Aligned_cols=208  Identities=16%  Similarity=0.159  Sum_probs=152.6

Q ss_pred             CCCCCCCceEEEcCC-CCeeEEEecCCEEEEEEcCCCCe--EEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCC
Q 019290           31 LPGVVGPESLAFDCN-GEGPYVGVSDGRILKWKAANSGW--TEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVT  107 (343)
Q Consensus        31 ~~~~~~p~~l~~d~~-g~~l~~~~~~g~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~  107 (343)
                      ++++..|..|.+++. +.++|++..+++|++++++++..  ..+.                    .....|.|+++++.+
T Consensus        31 ~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~--------------------~~l~~p~glavd~~~   90 (318)
T 3sov_A           31 VGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVV--------------------SGLLSPDGLACDWLG   90 (318)
T ss_dssp             EEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEE--------------------ECCSCCCEEEEETTT
T ss_pred             ecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEc--------------------CCCCCccEEEEEcCC
Confidence            335557889999985 66777889999999999887532  1111                    223468899999768


Q ss_pred             CeEEEEeCCC-eEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEE
Q 019290          108 CDLYIADAYF-GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKY  186 (343)
Q Consensus       108 ~~l~v~~~~~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~  186 (343)
                      ++||+++... .|.++++++...+.+..    .....|+++++|+.+|.||+++...                .++|+++
T Consensus        91 g~ly~~d~~~~~I~~~~~dG~~~~~l~~----~~~~~P~giavdp~~g~ly~td~~~----------------~~~I~r~  150 (318)
T 3sov_A           91 EKLYWTDSETNRIEVSNLDGSLRKVLFW----QELDQPRAIALDPSSGFMYWTDWGE----------------VPKIERA  150 (318)
T ss_dssp             TEEEEEETTTTEEEEEETTSCSCEEEEC----SSCSSEEEEEEEGGGTEEEEEECSS----------------SCEEEEE
T ss_pred             CeEEEEECCCCEEEEEECCCCcEEEEEe----CCCCCccEEEEeCCCCEEEEEecCC----------------CCEEEEE
Confidence            8999998764 59999998654444422    1235689999997558999998541                4679999


Q ss_pred             eCCCCceEEee-cCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeec-CCCCCCceeeCCCCCEEEEe
Q 019290          187 DPLKKNVTVMY-NGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAE-MPRFPDNIKSDSKGEFWIAM  264 (343)
Q Consensus       187 d~~~~~~~~~~-~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~G~lwi~~  264 (343)
                      ++++...+.+. .++..|++++++++++.|||+++..++|+++++++    ...+.+.. ....|.++++|. +.+|+++
T Consensus       151 ~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG----~~~~~~~~~~~~~P~glav~~-~~lywtd  225 (318)
T 3sov_A          151 GMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG----TNRQAVVKGSLPHPFALTLFE-DILYWTD  225 (318)
T ss_dssp             ETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS----CSCEEEECSCCSCEEEEEEET-TEEEEEE
T ss_pred             EcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCC----CceEEEecCCCCCceEEEEeC-CEEEEEe
Confidence            98855554443 56788999999998999999999999999999987    33344443 334699999985 4688888


Q ss_pred             ccCCCccccccccccccccCCCcccCCCeEEEECC-CCCEEEEe
Q 019290          265 NSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDV-NGNVVDVL  307 (343)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~  307 (343)
                      +.                        .+.|.++++ +|+....+
T Consensus       226 ~~------------------------~~~V~~~~~~~G~~~~~i  245 (318)
T 3sov_A          226 WS------------------------THSILACNKYTGEGLREI  245 (318)
T ss_dssp             TT------------------------TTEEEEEETTTCCSCEEE
T ss_pred             cC------------------------CCeEEEEECCCCCceEEE
Confidence            76                        457888887 56644443

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.78  E-value=1.4e-16  Score=159.85  Aligned_cols=239  Identities=13%  Similarity=0.173  Sum_probs=167.6

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCe-EEEEe
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCD-LYIAD  114 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~-l~v~~  114 (343)
                      ...+++.|++|+ +|+++.+++|+++++.++.+..+........           .......+.+++.++ +++ ||+++
T Consensus       358 ~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~-----------~~l~~~~v~~i~~d~-~g~~lWigt  424 (795)
T 4a2l_A          358 VVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESA-----------RGIGSNNIKAVYVDE-KKSLVYIGT  424 (795)
T ss_dssp             SEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC-----------------CCSCSCEEEEEEET-TTTEEEEEE
T ss_pred             eeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcc-----------cCCCCccEEEEEEcC-CCCEEEEEe
Confidence            367899999999 9999999899999999888877743110000           000123467888887 788 99997


Q ss_pred             CCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceE
Q 019290          115 AYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVT  194 (343)
Q Consensus       115 ~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~  194 (343)
                      ...||+++|+++++++.+.......+...+..++.|+ +|+||+++.                   .+|+++|+++++++
T Consensus       425 ~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~lwigt~-------------------~Gl~~~~~~~~~~~  484 (795)
T 4a2l_A          425 HAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDG-EGNLWLGTL-------------------SALVRFNPEQRSFT  484 (795)
T ss_dssp             TTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECS-SSCEEEEES-------------------SCEEEEETTTTEEE
T ss_pred             CcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECC-CCCEEEEec-------------------CceeEEeCCCCeEE
Confidence            6689999999998887764322222335678899999 599999763                   36999999888776


Q ss_pred             EeecC-----C--CCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeee---cCCCC----CCceeeCCCCCE
Q 019290          195 VMYNG-----L--SFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFA---EMPRF----PDNIKSDSKGEF  260 (343)
Q Consensus       195 ~~~~~-----~--~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~---~~~~~----p~~i~~d~~G~l  260 (343)
                      .+...     +  .....++.++++. +|++..  ++|++++..+.    .. .+.   ...++    ...++.|++|+|
T Consensus       485 ~~~~~~~~~~~~~~~i~~i~~d~~g~-lWigt~--~Gl~~~~~~~~----~~-~~~~~~~~~~l~~~~i~~i~~d~~g~l  556 (795)
T 4a2l_A          485 TIEKEKDGTPVVSKQITTLFRDSHKR-LWIGGE--EGLSVFKQEGL----DI-QKASILPVSNVTKLFTNCIYEASNGII  556 (795)
T ss_dssp             ECCBCTTCCBCCCCCEEEEEECTTCC-EEEEES--SCEEEEEEETT----EE-EECCCSCSCGGGGSCEEEEEECTTSCE
T ss_pred             EccccccccccCCceEEEEEECCCCC-EEEEeC--CceEEEeCCCC----eE-EEecCCCCCCCCCCeeEEEEECCCCCE
Confidence            65422     1  2345677777665 777654  67999997652    22 221   11122    334678999999


Q ss_pred             EEEeccCCCccccccccccccccCCCcccCCCeEEEECCCCCEEEEeeCCCCCccCCceeEEEe-CCEEEEecCCCCeEE
Q 019290          261 WIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEGNTLNSVSEVQEY-GEYLYTGSSVQPYVV  339 (343)
Q Consensus       261 wi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~~~~i~  339 (343)
                      |+++..                          +++++|++...+..+...++.....+..+.++ +|+||+++.  +-+.
T Consensus       557 WigT~~--------------------------Gl~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t~--~Gl~  608 (795)
T 4a2l_A          557 WVGTRE--------------------------GFYCFNEKDKQIKRYNTTNGLPNNVVYGILEDSFGRLWLSTN--RGIS  608 (795)
T ss_dssp             EEEESS--------------------------CEEEEETTTTEEEEECGGGTCSCSCEEEEEECTTSCEEEEET--TEEE
T ss_pred             EEEeCC--------------------------CceeECCCCCcEEEeCCCCCCchhheEEEEECCCCCEEEEcC--CceE
Confidence            999976                          89999998877777765555555567777777 899999995  4577


Q ss_pred             EEcC
Q 019290          340 VIKA  343 (343)
Q Consensus       340 ~~~~  343 (343)
                      ++++
T Consensus       609 ~~~~  612 (795)
T 4a2l_A          609 CFNP  612 (795)
T ss_dssp             EEET
T ss_pred             EEcC
Confidence            7764

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=99.77  E-value=2.8e-16  Score=145.15  Aligned_cols=219  Identities=15%  Similarity=0.170  Sum_probs=158.1

Q ss_pred             cCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCCC-eEEEEeCCCC----e
Q 019290           54 SDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYF-GLMVVGPNGG----Q  128 (343)
Q Consensus        54 ~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~~-gi~~~d~~~~----~  128 (343)
                      ....|.+++.++.....+.                    .....|.++++++.++.||++|... .|+++++++.    .
T Consensus        90 ~~~~I~~i~l~~~~~~~~~--------------------~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~  149 (400)
T 3p5b_L           90 NRHEVRKMTLDRSEYTSLI--------------------PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS  149 (400)
T ss_dssp             ETTEEEEECTTSCSCEEEE--------------------CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CC
T ss_pred             ccceeEEEccCCcceeEec--------------------cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCc
Confidence            4578999998876655442                    3345689999998788999998764 4999998752    2


Q ss_pred             EEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEee-cCCCCcceeE
Q 019290          129 AQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMY-NGLSFPNGVA  207 (343)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~-~~~~~~~~i~  207 (343)
                      .+.+..    .....+.++++|+.+++||+++..                 .+.|.++++++...+.+. ..+..|++++
T Consensus       150 ~~~~~~----~~~~~p~glavD~~~~~lY~~d~~-----------------~~~I~~~~~~g~~~~~l~~~~~~~P~~ia  208 (400)
T 3p5b_L          150 YDTVIS----RDIQAPDGLAVDWIHSNIYWTDSV-----------------LGTVSVADTKGVKRKTLFRENGSKPRAIV  208 (400)
T ss_dssp             CEEEEC----SSCSCEEEEEEETTTTEEEEEETT-----------------TTEEEEECTTTCSEEEEEECSSCCEEEEE
T ss_pred             ceEEEe----CCCCCcccEEEEecCCceEEEECC-----------------CCeEEEEeCCCCceEEEEeCCCCCcceEE
Confidence            222221    123568999999745899999976                 568999999866655544 4677899999


Q ss_pred             EecCCCEEEEEEcC-CCeEEEEEccCccccccceeeec-CCCCCCceeeCC-CCCEEEEeccCCCccccccccccccccC
Q 019290          208 LSNNNSFLLLAESA-TLKILRFWLQGERTTYTPQLFAE-MPRFPDNIKSDS-KGEFWIAMNSARGKIESNKKTAFCEETA  284 (343)
Q Consensus       208 ~~~d~~~lyv~~~~-~~~i~~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~-~G~lwi~~~~~~~~~~~~~~~~~~~~~~  284 (343)
                      +++.++.|||++.. .++|+++++++.    ..+.+.. .-..|.+|++|+ +++||+++..                  
T Consensus       209 vdp~~g~ly~td~~~~~~I~~~~~dG~----~~~~~~~~~l~~P~glavd~~~~~lY~aD~~------------------  266 (400)
T 3p5b_L          209 VDPVHGFMYWTDWGTPAKIKKGGLNGV----DIYSLVTENIQWPNGITLDLLSGRLYWVDSK------------------  266 (400)
T ss_dssp             EETTTTEEEEEECSSSCCEEEEETTSC----SCEEEECSSCSCEEEEEEETTTTEEEEEETT------------------
T ss_pred             EecccCeEEEEeCCCCCEEEEEeCCCC----ccEEEEECCCCceEEEEEEeCCCEEEEEECC------------------
Confidence            99988899999875 489999999873    3333332 224699999996 5789999876                  


Q ss_pred             CCcccCCCeEEEECCCCCEEEEeeCCCCCccCCceeEEEeCCEEEEecCCCCeEEEEc
Q 019290          285 KPWFLRDPVGVKFDVNGNVVDVLDGNEGNTLNSVSEVQEYGEYLYTGSSVQPYVVVIK  342 (343)
Q Consensus       285 ~~~~~~~~~v~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~~~~i~~~~  342 (343)
                            .+.|.++|.+|.....+....+ ....+..+..++++||++.+..++|.+++
T Consensus       267 ------~~~I~~~d~dG~~~~~~~~~~~-~l~~P~gl~v~~~~lywtd~~~~~V~~~~  317 (400)
T 3p5b_L          267 ------LHSISSIDVNGGNRKTILEDEK-RLAHPFSLAVFEDKVFWTDIINEAIFSAN  317 (400)
T ss_dssp             ------TTEEEEEETTSCCCEEEEECSS-TTSSEEEEEEETTEEEEEESSSCSEEEEE
T ss_pred             ------CCEEEEEeCCCCccEEEEeCCC-CCCCCEEEEEeCCEEEEecCCCCeEEEEE
Confidence                  4588999988765444432222 23344455558899999999999999986

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=99.77  E-value=9.2e-17  Score=160.90  Aligned_cols=234  Identities=13%  Similarity=0.101  Sum_probs=164.5

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      ...+++.|++|+ +|+++.+++|+++++.++.+..+....                ......+..+..++ +++||+++.
T Consensus       364 ~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~----------------~~~~~~v~~i~~d~-~g~lWigt~  425 (781)
T 3v9f_A          364 VVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENR----------------ELLSNSVLCSLKDS-EGNLWFGTY  425 (781)
T ss_dssp             CEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC---------------------CCCSBEEEEEECT-TSCEEEEET
T ss_pred             ceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCC----------------CCCCcceEEEEECC-CCCEEEEec
Confidence            467899999999 899998888999999876554442100                01123467888887 899999976


Q ss_pred             CCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEE
Q 019290          116 YFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTV  195 (343)
Q Consensus       116 ~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~  195 (343)
                      ..||+++++++++++.+...  ......+..++.|+ +|++|+++.                   ++|+++|+.+++++.
T Consensus       426 ~~Gl~~~~~~~~~~~~~~~~--~~~~~~v~~i~~d~-~g~lwigt~-------------------~Gl~~~~~~~~~~~~  483 (781)
T 3v9f_A          426 LGNISYYNTRLKKFQIIELE--KNELLDVRVFYEDK-NKKIWIGTH-------------------AGVFVIDLASKKVIH  483 (781)
T ss_dssp             TEEEEEECSSSCEEEECCST--TTCCCCEEEEEECT-TSEEEEEET-------------------TEEEEEESSSSSCCE
T ss_pred             cCCEEEEcCCCCcEEEeccC--CCCCCeEEEEEECC-CCCEEEEEC-------------------CceEEEeCCCCeEEe
Confidence            67899999998888876432  22235678899999 599999763                   469999998777655


Q ss_pred             eecC------CCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCC----ceeeCCCCCEEEEec
Q 019290          196 MYNG------LSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPD----NIKSDSKGEFWIAMN  265 (343)
Q Consensus       196 ~~~~------~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~----~i~~d~~G~lwi~~~  265 (343)
                      +...      ......++.+++|. +|++.. .++|++++.++    ...+.+....+++.    .++.|++|+||+++.
T Consensus       484 ~~~~~~~~~~~~~i~~i~~d~~g~-lWigt~-~~Gl~~~~~~~----~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~  557 (781)
T 3v9f_A          484 HYDTSNSQLLENFVRSIAQDSEGR-FWIGTF-GGGVGIYTPDM----QLVRKFNQYEGFCSNTINQIYRSSKGQMWLATG  557 (781)
T ss_dssp             EECTTTSSCSCSCEEEEEECTTCC-EEEEES-SSCEEEECTTC----CEEEEECTTTTCSCSCEEEEEECTTSCEEEEET
T ss_pred             cccCcccccccceeEEEEEcCCCC-EEEEEc-CCCEEEEeCCC----CeEEEccCCCCCCCCeeEEEEECCCCCEEEEEC
Confidence            4321      13356777777765 676643 46799998765    33344433333443    467799999999997


Q ss_pred             cCCCccccccccccccccCCCcccCCCeE-EEECCCCCEEEEeeCCCCCccCCceeEEEe-CCEEEEecCCCCeEEEEcC
Q 019290          266 SARGKIESNKKTAFCEETAKPWFLRDPVG-VKFDVNGNVVDVLDGNEGNTLNSVSEVQEY-GEYLYTGSSVQPYVVVIKA  343 (343)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~~~~i~~~~~  343 (343)
                      .                          ++ +++|++...+..+...++.....+..+.++ +|+||+++...  +.++++
T Consensus       558 ~--------------------------Glv~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lW~~t~~G--l~~~~~  609 (781)
T 3v9f_A          558 E--------------------------GLVCFPSARNFDYQVFQRKEGLPNTHIRAISEDKNGNIWASTNTG--ISCYIT  609 (781)
T ss_dssp             T--------------------------EEEEESCTTTCCCEEECGGGTCSCCCCCEEEECSSSCEEEECSSC--EEEEET
T ss_pred             C--------------------------CceEEECCCCCcEEEccccCCCCCceEEEEEECCCCCEEEEcCCc--eEEEEC
Confidence            6                          77 999997766666665555555566677776 89999999654  777764

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.77  E-value=1.2e-16  Score=143.74  Aligned_cols=224  Identities=15%  Similarity=0.186  Sum_probs=153.1

Q ss_pred             ccccccCCCCCCCceEEEcCCCCeeEEEe-cCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEE
Q 019290           25 SYQQLQLPGVVGPESLAFDCNGEGPYVGV-SDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKF  103 (343)
Q Consensus        25 ~~~~~~~~~~~~p~~l~~d~~g~~l~~~~-~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~  103 (343)
                      ..+++  +....|++|+++++|+ +|++. .++.|.++|+.+.+.........              .......|.++++
T Consensus        76 ~~~~i--~~~~~p~~i~~~~~g~-lyv~~~~~~~v~~iD~~t~~~~~~i~~g~--------------~~~~~~~p~~i~~  138 (328)
T 3dsm_A           76 EVGRI--TGFTSPRYIHFLSDEK-AYVTQIWDYRIFIINPKTYEITGYIECPD--------------MDMESGSTEQMVQ  138 (328)
T ss_dssp             EEEEE--ECCSSEEEEEEEETTE-EEEEEBSCSEEEEEETTTTEEEEEEECTT--------------CCTTTCBCCCEEE
T ss_pred             EEEEc--CCCCCCcEEEEeCCCe-EEEEECCCCeEEEEECCCCeEEEEEEcCC--------------ccccCCCcceEEE
Confidence            34445  3345899999998886 77665 78999999998876543211000              0011236788988


Q ss_pred             eCCCCeEEEEeC--CCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCc
Q 019290          104 NPVTCDLYIADA--YFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSG  181 (343)
Q Consensus       104 ~~~~~~l~v~~~--~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~  181 (343)
                      +  ++.||+++.  .+.|.++|++++++......  +   ..++++++++ +|++|+++.......       ......+
T Consensus       139 ~--~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~--g---~~p~~i~~~~-dG~l~v~~~~~~~~~-------~~~~~~~  203 (328)
T 3dsm_A          139 Y--GKYVYVNCWSYQNRILKIDTETDKVVDELTI--G---IQPTSLVMDK-YNKMWTITDGGYEGS-------PYGYEAP  203 (328)
T ss_dssp             E--TTEEEEEECTTCCEEEEEETTTTEEEEEEEC--S---SCBCCCEECT-TSEEEEEBCCBCTTC-------SSCBCCC
T ss_pred             E--CCEEEEEcCCCCCEEEEEECCCCeEEEEEEc--C---CCccceEEcC-CCCEEEEECCCccCC-------ccccCCc
Confidence            4  789999985  35699999999886554322  1   3578999999 699999886521000       0000136


Q ss_pred             eEEEEeCCCCceEEeec--CCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecC-CCCCCceeeCC-C
Q 019290          182 RLLKYDPLKKNVTVMYN--GLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEM-PRFPDNIKSDS-K  257 (343)
Q Consensus       182 ~v~~~d~~~~~~~~~~~--~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~p~~i~~d~-~  257 (343)
                      .|+++|++++++.....  ....|++++++++++.||+++.   .|+++|..+... ... .+... ...|.++++|+ +
T Consensus       204 ~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~---~v~~~d~~t~~~-~~~-~~~~~~~~~p~gi~vdp~~  278 (328)
T 3dsm_A          204 SLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN---DIWRMPVEADRV-PVR-PFLEFRDTKYYGLTVNPNN  278 (328)
T ss_dssp             EEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS---SEEEEETTCSSC-CSS-CSBCCCSSCEEEEEECTTT
T ss_pred             eEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc---EEEEEECCCCce-eee-eeecCCCCceEEEEEcCCC
Confidence            79999998887653222  2347999999999999999864   899999865322 111 11111 34689999998 7


Q ss_pred             CCEEEEe----ccCCCccccccccccccccCCCcccCCCeEEEECCCCCEEEEeeC
Q 019290          258 GEFWIAM----NSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDG  309 (343)
Q Consensus       258 G~lwi~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~  309 (343)
                      |++|+++    ..                        .+.|++||++|+.+..+..
T Consensus       279 g~lyva~~~~y~~------------------------~~~V~v~d~~g~~~~~i~~  310 (328)
T 3dsm_A          279 GEVYVADAIDYQQ------------------------QGIVYRYSPQGKLIDEFYV  310 (328)
T ss_dssp             CCEEEEECTTSSS------------------------EEEEEEECTTCCEEEEEEE
T ss_pred             CeEEEEccccccc------------------------CCEEEEECCCCCEEEEEEe
Confidence            8999998    33                        3589999999998877754

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.77  E-value=5.2e-16  Score=139.74  Aligned_cols=256  Identities=14%  Similarity=0.146  Sum_probs=165.3

Q ss_pred             cccccCccccccccCCCCCCCceEEEcCCCCeeEEEec-------CCEEEEEEcCCCCeEEeeecCCCccccccCCCCCc
Q 019290           17 PCVILSSKSYQQLQLPGVVGPESLAFDCNGEGPYVGVS-------DGRILKWKAANSGWTEFATTAPHRAREICDGSTNT   89 (343)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~p~~l~~d~~g~~l~~~~~-------~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (343)
                      ++.+.+.....+.++..  .|.+++++++|+.+|+...       ++.|+.+|..+++......                
T Consensus        25 ~~~~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~----------------   86 (353)
T 3vgz_A           25 SFSTQAAEEMLRKAVGK--GAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIH----------------   86 (353)
T ss_dssp             --------CEEEEEEES--SEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEE----------------
T ss_pred             cccccchhhhhhhhhcc--CccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEe----------------
Confidence            33333333334444443  7999999999998887653       5689999998876443221                


Q ss_pred             ccCCCcCCeeeEEEeCCCCeEEEEeCC-CeEEEEeCCCCeEEEcccccCCC-----CccCcceeEEeCCCCeEEEEeCCc
Q 019290           90 TLEPLCGRPLGIKFNPVTCDLYIADAY-FGLMVVGPNGGQAQQLASSAGGI-----PFRFTNDLDIDPNTGIVYFTDSSI  163 (343)
Q Consensus        90 ~~~~~~~~p~gi~~~~~~~~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~~-----~~~~~~~i~~d~~dg~l~v~~~~~  163 (343)
                          ....|.+++++++++.+|+++.. ..|..+|.++++...........     ....+.+++++++++.+|+++.. 
T Consensus        87 ----~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~-  161 (353)
T 3vgz_A           87 ----NDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIG-  161 (353)
T ss_dssp             ----ESSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEES-
T ss_pred             ----cCCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecC-
Confidence                12247889999955569999765 45999999988765433221110     01236789999943458887632 


Q ss_pred             ccccccceeeeeecCCCceEEEEeCCCCceEEeec-CCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceee
Q 019290          164 YFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYN-GLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLF  242 (343)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~  242 (343)
                                     ..+.|+.+|..+++...... ....+.+++++++++.+|+++. ++.|+++++.....   ...+
T Consensus       162 ---------------~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~-~~~i~~~d~~~~~~---~~~~  222 (353)
T 3vgz_A          162 ---------------KESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNA-DGELITIDTADNKI---LSRK  222 (353)
T ss_dssp             ---------------SSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECT-TSEEEEEETTTTEE---EEEE
T ss_pred             ---------------CCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcC-CCeEEEEECCCCeE---EEEE
Confidence                           14579999998887765444 4456899999999999998865 78999999765322   1111


Q ss_pred             ec-C---CCCCCceeeCCCCC-EEEEeccCCCccccccccccccccCCCcccCCCeEEEECC-CCCEEEEeeCCCCCccC
Q 019290          243 AE-M---PRFPDNIKSDSKGE-FWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDV-NGNVVDVLDGNEGNTLN  316 (343)
Q Consensus       243 ~~-~---~~~p~~i~~d~~G~-lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~~~~~~~~~  316 (343)
                      .. .   ...+.+++++++|+ +|++...                        .+.|+.+|. +++.+..+..+..    
T Consensus       223 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~------------------------~~~v~~~d~~~~~~~~~~~~~~~----  274 (353)
T 3vgz_A          223 KLLDDGKEHFFINISLDTARQRAFITDSK------------------------AAEVLVVDTRNGNILAKVAAPES----  274 (353)
T ss_dssp             ECCCSSSCCCEEEEEEETTTTEEEEEESS------------------------SSEEEEEETTTCCEEEEEECSSC----
T ss_pred             EcCCCCCCcccceEEECCCCCEEEEEeCC------------------------CCEEEEEECCCCcEEEEEEcCCC----
Confidence            11 1   12345688999986 7777654                        357888997 5677666654322    


Q ss_pred             CceeE-EEeCCEEEEecCCCCeEEEEcC
Q 019290          317 SVSEV-QEYGEYLYTGSSVQPYVVVIKA  343 (343)
Q Consensus       317 ~~~~~-~~~~g~l~i~~~~~~~i~~~~~  343 (343)
                       .... .++++.||+++...+.|.+++.
T Consensus       275 -~~~~~s~dg~~l~v~~~~~~~v~~~d~  301 (353)
T 3vgz_A          275 -LAVLFNPARNEAYVTHRQAGKVSVIDA  301 (353)
T ss_dssp             -CCEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             -ceEEECCCCCEEEEEECCCCeEEEEEC
Confidence             1222 2235679999988889988863

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=99.77  E-value=8.6e-16  Score=143.69  Aligned_cols=247  Identities=17%  Similarity=0.184  Sum_probs=171.5

Q ss_pred             CCCCCceEEEcCC-CCeeEEE-ecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEE-------
Q 019290           33 GVVGPESLAFDCN-GEGPYVG-VSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKF-------  103 (343)
Q Consensus        33 ~~~~p~~l~~d~~-g~~l~~~-~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~-------  103 (343)
                      ++..|.+|++||. +..||+. ...++|.++|++++.+..+....                ......|.+|++       
T Consensus       137 ~~~~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~----------------~~~~~~p~~ia~~~~~~~~  200 (496)
T 3kya_A          137 GFSDNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNIN----------------TIPTNRIRSIAFNKKIEGY  200 (496)
T ss_dssp             CCCSEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCT----------------TSSCSBEEEEEECCCBTTT
T ss_pred             ccCCCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccC----------------ccccCCCcEEEEeeccccc
Confidence            4557999999983 4447755 44578999999988777664211                012346899999       


Q ss_pred             eCCCCeEEEEeCCC-------eEEEEeCCC-CeEE------EcccccCCCCccCcceeEEeCCCCeEEEEeCCccccccc
Q 019290          104 NPVTCDLYIADAYF-------GLMVVGPNG-GQAQ------QLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQ  169 (343)
Q Consensus       104 ~~~~~~l~v~~~~~-------gi~~~d~~~-~~~~------~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~  169 (343)
                      +++++.||+++...       .+++++++. +.+.      .+.      ....++++++++.++.||+++..       
T Consensus       201 d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~------~~~~p~giavdp~~g~LYvtd~~-------  267 (496)
T 3kya_A          201 ADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIA------AYKQCNGATIHPINGELYFNSYE-------  267 (496)
T ss_dssp             BCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEE------EESCCCCEEECTTTCCEEEEETT-------
T ss_pred             CCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeec------cCCCceEEEEcCCCCeEEEEECC-------
Confidence            98445699998654       388887654 3332      121      23578999999955899999876       


Q ss_pred             ceeeeeecCCCceEEEEeCC-------CCce------------EEee--cCCCCcceeEEecCCCEEEEEEcCCCeEEEE
Q 019290          170 YFMSIATGDRSGRLLKYDPL-------KKNV------------TVMY--NGLSFPNGVALSNNNSFLLLAESATLKILRF  228 (343)
Q Consensus       170 ~~~~~~~~~~~~~v~~~d~~-------~~~~------------~~~~--~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~  228 (343)
                                .+.|+++|++       ++..            ..+.  .....+.+++++++++.||++++.+++|+++
T Consensus       268 ----------~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~ki  337 (496)
T 3kya_A          268 ----------KGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRS  337 (496)
T ss_dssp             ----------TTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             ----------CCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEE
Confidence                      5679999987       5543            1211  2334578999999999999999999999998


Q ss_pred             EccCcc-ccccceeeecC---C------------CCCC-ceeeC-------CCCCEEEEeccCCCccccccccccccccC
Q 019290          229 WLQGER-TTYTPQLFAEM---P------------RFPD-NIKSD-------SKGEFWIAMNSARGKIESNKKTAFCEETA  284 (343)
Q Consensus       229 ~~~~~~-~~~~~~~~~~~---~------------~~p~-~i~~d-------~~G~lwi~~~~~~~~~~~~~~~~~~~~~~  284 (343)
                      +.++.. .+.....++..   .            ..|. ++++|       ++|+|||++..                  
T Consensus       338 d~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~------------------  399 (496)
T 3kya_A          338 DYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRL------------------  399 (496)
T ss_dssp             EEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGG------------------
T ss_pred             ecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECC------------------
Confidence            877532 10111222211   1            1366 67777       68999999987                  


Q ss_pred             CCcccCCCeEEEECCCCCEEEEeeCCC--------------C-----CccCCceeEEEe-C-CEEEEecCCCCeEEEEc
Q 019290          285 KPWFLRDPVGVKFDVNGNVVDVLDGNE--------------G-----NTLNSVSEVQEY-G-EYLYTGSSVQPYVVVIK  342 (343)
Q Consensus       285 ~~~~~~~~~v~~~d~~g~~~~~~~~~~--------------~-----~~~~~~~~~~~~-~-g~l~i~~~~~~~i~~~~  342 (343)
                            .+.|.+++++|..........              +     ..+..+..+..+ . |+|||+....++|.+++
T Consensus       400 ------N~rIr~i~~~G~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~  472 (496)
T 3kya_A          400 ------NFCVRKVTPEGIVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTIS  472 (496)
T ss_dssp             ------GTEEEEECTTCBEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             ------CCEEEEEeCCCCEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEE
Confidence                  568999999997766553211              1     134556666666 4 99999999999999986

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.76  E-value=5.1e-16  Score=155.78  Aligned_cols=235  Identities=12%  Similarity=0.153  Sum_probs=165.2

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      ...+++.|++|+.+|+++.+++|+++|+.++++..+....  .             ......+..+..++ +++||+++.
T Consensus       407 ~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~--~-------------~l~~~~v~~i~~d~-~g~lwigt~  470 (795)
T 4a2l_A          407 NIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRN--S-------------QLVNENVYAILPDG-EGNLWLGTL  470 (795)
T ss_dssp             CEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTT--S-------------CCSCSCEEEEEECS-SSCEEEEES
T ss_pred             cEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCC--C-------------CcCCCeeEEEEECC-CCCEEEEec
Confidence            4568899999986899998889999999988887774210  0             01123467888887 899999975


Q ss_pred             CCeEEEEeCCCCeEEEccccc--CCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCce
Q 019290          116 YFGLMVVGPNGGQAQQLASSA--GGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNV  193 (343)
Q Consensus       116 ~~gi~~~d~~~~~~~~~~~~~--~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~  193 (343)
                       .||+++++++++++.+....  .......+.++..|+ +|++|+++.                   ++|+++|++++++
T Consensus       471 -~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~-~g~lWigt~-------------------~Gl~~~~~~~~~~  529 (795)
T 4a2l_A          471 -SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDS-HKRLWIGGE-------------------EGLSVFKQEGLDI  529 (795)
T ss_dssp             -SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECT-TCCEEEEES-------------------SCEEEEEEETTEE
T ss_pred             -CceeEEeCCCCeEEEccccccccccCCceEEEEEECC-CCCEEEEeC-------------------CceEEEeCCCCeE
Confidence             89999999998887764321  112235678899999 599999763                   3699999876665


Q ss_pred             EEeec-----CC--CCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCc----eeeCCCCCEEE
Q 019290          194 TVMYN-----GL--SFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDN----IKSDSKGEFWI  262 (343)
Q Consensus       194 ~~~~~-----~~--~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~----i~~d~~G~lwi  262 (343)
                       .+..     .+  .....++.+++|. +|++..  ++|++++..+    ..++.+....++|.+    ++.|++|+||+
T Consensus       530 -~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigT~--~Gl~~~d~~~----~~~~~~~~~~gl~~~~i~~i~~d~~g~lWi  601 (795)
T 4a2l_A          530 -QKASILPVSNVTKLFTNCIYEASNGI-IWVGTR--EGFYCFNEKD----KQIKRYNTTNGLPNNVVYGILEDSFGRLWL  601 (795)
T ss_dssp             -EECCCSCSCGGGGSCEEEEEECTTSC-EEEEES--SCEEEEETTT----TEEEEECGGGTCSCSCEEEEEECTTSCEEE
T ss_pred             -EEecCCCCCCCCCCeeEEEEECCCCC-EEEEeC--CCceeECCCC----CcEEEeCCCCCCchhheEEEEECCCCCEEE
Confidence             3321     11  1245666666665 677654  3899999765    344444444455554    67899999999


Q ss_pred             EeccCCCccccccccccccccCCCcccCCCeEEEECCCCCEEEEeeCCCCCccCCc--eeEEE-eCCEEEEecCCCCeEE
Q 019290          263 AMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEGNTLNSV--SEVQE-YGEYLYTGSSVQPYVV  339 (343)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~~~~~~~~--~~~~~-~~g~l~i~~~~~~~i~  339 (343)
                      ++..                          ++.+++++...+..+...++.....+  ..+.. .+|+||+|+...  +.
T Consensus       602 ~t~~--------------------------Gl~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~~~~G~l~~g~~~G--l~  653 (795)
T 4a2l_A          602 STNR--------------------------GISCFNPETEKFRNFTESDGLQSNQFNTASYCRTSVGQMYFGGING--IT  653 (795)
T ss_dssp             EETT--------------------------EEEEEETTTTEEEEECGGGTCSCSCEEEEEEEECTTSCEEEEETTE--EE
T ss_pred             EcCC--------------------------ceEEEcCCCCcEEEcCCcCCCccccCccCceeECCCCeEEEecCCc--eE
Confidence            9977                          89999998888888876666544444  23333 489999999875  66


Q ss_pred             EEcC
Q 019290          340 VIKA  343 (343)
Q Consensus       340 ~~~~  343 (343)
                      +++|
T Consensus       654 ~~~p  657 (795)
T 4a2l_A          654 TFRP  657 (795)
T ss_dssp             EECG
T ss_pred             EEcH
Confidence            6653

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.76  E-value=3.2e-16  Score=136.13  Aligned_cols=188  Identities=19%  Similarity=0.310  Sum_probs=135.1

Q ss_pred             CCCCCCCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeE
Q 019290           31 LPGVVGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDL  110 (343)
Q Consensus        31 ~~~~~~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l  110 (343)
                      ..+...|.+|+++++|+ +|++..+++|+++|+++.....+..                   .....|.++++++ ++++
T Consensus        63 ~~~~~~p~~i~~~~~g~-l~v~~~~~~i~~~d~~~~~~~~~~~-------------------~~~~~p~~i~~~~-~g~l  121 (270)
T 1rwi_B           63 FNGLYQPQGLAVDGAGT-VYVTDFNNRVVTLAAGSNNQTVLPF-------------------DGLNYPEGLAVDT-QGAV  121 (270)
T ss_dssp             CCSCCSCCCEEECTTCC-EEEEETTTEEEEECTTCSCCEECCC-------------------CSCSSEEEEEECT-TCCE
T ss_pred             eCCcCCcceeEECCCCC-EEEEcCCCEEEEEeCCCceEeeeec-------------------CCcCCCcceEECC-CCCE
Confidence            34456799999999999 6655458899999988765443310                   2234689999998 7889


Q ss_pred             EEEeCC-CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCC
Q 019290          111 YIADAY-FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPL  189 (343)
Q Consensus       111 ~v~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~  189 (343)
                      |+++.. .+|++++..+.......    ......++++++++ +|++|+++..                 .++|+++|.+
T Consensus       122 ~v~~~~~~~i~~~~~~~~~~~~~~----~~~~~~p~~i~~~~-~g~l~v~~~~-----------------~~~i~~~~~~  179 (270)
T 1rwi_B          122 YVADRGNNRVVKLAAGSKTQTVLP----FTGLNDPDGVAVDN-SGNVYVTDTD-----------------NNRVVKLEAE  179 (270)
T ss_dssp             EEEEGGGTEEEEECTTCCSCEECC----CCSCCSCCCEEECT-TCCEEEEEGG-----------------GTEEEEECTT
T ss_pred             EEEECCCCEEEEEECCCceeEeec----cccCCCceeEEEeC-CCCEEEEECC-----------------CCEEEEEecC
Confidence            999764 45999987654433221    11234689999999 5999998864                 4679999988


Q ss_pred             CCceEEe-ecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeec-CCCCCCceeeCCCCCEEEEecc
Q 019290          190 KKNVTVM-YNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAE-MPRFPDNIKSDSKGEFWIAMNS  266 (343)
Q Consensus       190 ~~~~~~~-~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~G~lwi~~~~  266 (343)
                      ++..... ...+..+.+++++++| .+|+++..+++|++++.++..    ...... ....|.++++|++|++|+++..
T Consensus       180 ~~~~~~~~~~~~~~p~~i~~d~~g-~l~v~~~~~~~v~~~~~~~~~----~~~~~~~~~~~p~~i~~~~~g~l~v~~~~  253 (270)
T 1rwi_B          180 SNNQVVLPFTDITAPWGIAVDEAG-TVYVTEHNTNQVVKLLAGSTT----STVLPFTGLNTPLAVAVDSDRTVYVADRG  253 (270)
T ss_dssp             TCCEEECCCSSCCSEEEEEECTTC-CEEEEETTTSCEEEECTTCSC----CEECCCCSCSCEEEEEECTTCCEEEEEGG
T ss_pred             CCceEeecccCCCCceEEEECCCC-CEEEEECCCCcEEEEcCCCCc----ceeeccCCCCCceeEEECCCCCEEEEECC
Confidence            6655433 2344678999999988 699999888999999976522    111111 1134788999999999999887

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=99.75  E-value=4e-16  Score=144.10  Aligned_cols=191  Identities=15%  Similarity=0.181  Sum_probs=140.7

Q ss_pred             CCCCCCceEEEcCC-CCeeEEEecCCEEEEEEcCCC----CeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCC
Q 019290           32 PGVVGPESLAFDCN-GEGPYVGVSDGRILKWKAANS----GWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPV  106 (343)
Q Consensus        32 ~~~~~p~~l~~d~~-g~~l~~~~~~g~i~~~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~  106 (343)
                      +++..|.+|++|+. +.++|++..+++|+++++++.    ....+.                   ......|.|+++++.
T Consensus       109 ~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~-------------------~~~~~~p~glavD~~  169 (400)
T 3p5b_L          109 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-------------------SRDIQAPDGLAVDWI  169 (400)
T ss_dssp             CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEE-------------------CSSCSCEEEEEEETT
T ss_pred             cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEE-------------------eCCCCCcccEEEEec
Confidence            45668999999975 666778888999999998762    222221                   123457899999986


Q ss_pred             CCeEEEEeCCC-eEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEE
Q 019290          107 TCDLYIADAYF-GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLK  185 (343)
Q Consensus       107 ~~~l~v~~~~~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~  185 (343)
                      .++||+++... .|.++++++...+.+...    .+..|++|++|+.+|.||+++...                .+.|++
T Consensus       170 ~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~----~~~~P~~iavdp~~g~ly~td~~~----------------~~~I~~  229 (400)
T 3p5b_L          170 HSNIYWTDSVLGTVSVADTKGVKRKTLFRE----NGSKPRAIVVDPVHGFMYWTDWGT----------------PAKIKK  229 (400)
T ss_dssp             TTEEEEEETTTTEEEEECTTTCSEEEEEEC----SSCCEEEEEEETTTTEEEEEECSS----------------SCCEEE
T ss_pred             CCceEEEECCCCeEEEEeCCCCceEEEEeC----CCCCcceEEEecccCeEEEEeCCC----------------CCEEEE
Confidence            88999998765 499999987655554321    235689999998568999998641                357999


Q ss_pred             EeCCCCceEEee-cCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecC---CCCCCceeeCCCCCEE
Q 019290          186 YDPLKKNVTVMY-NGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEM---PRFPDNIKSDSKGEFW  261 (343)
Q Consensus       186 ~d~~~~~~~~~~-~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~---~~~p~~i~~d~~G~lw  261 (343)
                      +++++...+.+. .++..|++++++++++.|||+++..++|+++++++    ...+.+...   -..|.+++++. +++|
T Consensus       230 ~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG----~~~~~~~~~~~~l~~P~gl~v~~-~~ly  304 (400)
T 3p5b_L          230 GGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG----GNRKTILEDEKRLAHPFSLAVFE-DKVF  304 (400)
T ss_dssp             EETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS----CCCEEEEECSSTTSSEEEEEEET-TEEE
T ss_pred             EeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCC----CccEEEEeCCCCCCCCEEEEEeC-CEEE
Confidence            998865555443 45688999999999999999999999999999987    333444332   24588999964 5688


Q ss_pred             EEecc
Q 019290          262 IAMNS  266 (343)
Q Consensus       262 i~~~~  266 (343)
                      ++++.
T Consensus       305 wtd~~  309 (400)
T 3p5b_L          305 WTDII  309 (400)
T ss_dssp             EEESS
T ss_pred             EecCC
Confidence            88876

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=99.75  E-value=4.5e-16  Score=155.91  Aligned_cols=240  Identities=13%  Similarity=0.083  Sum_probs=164.2

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCC-ccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEe
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPH-RAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIAD  114 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~  114 (343)
                      ...+|+.|++|+ +|+++.+++|+++++.+..+..+...+.. ..           .......+.+++.++ +++||+++
T Consensus       314 ~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~-----------~~l~~~~v~~i~~d~-~g~lWigt  380 (781)
T 3v9f_A          314 SARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNE-----------SSLSNKVVSSVCDDG-QGKLWIGT  380 (781)
T ss_dssp             CEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCS-----------SCCSSSCEEEEEECT-TSCEEEEE
T ss_pred             eEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCcccccc-----------CCCCCcceEEEEEcC-CCCEEEEe
Confidence            467899999999 99999888999999988877776432100 00           001123467888887 89999997


Q ss_pred             CCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceE
Q 019290          115 AYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVT  194 (343)
Q Consensus       115 ~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~  194 (343)
                      ...||+++++++++++.+. .........+.+++.|+ +|+||+++.                  .++|+++++.+++++
T Consensus       381 ~~~Gl~~~~~~~~~~~~~~-~~~~~~~~~v~~i~~d~-~g~lWigt~------------------~~Gl~~~~~~~~~~~  440 (781)
T 3v9f_A          381 DGGGINVFENGKRVAIYNK-ENRELLSNSVLCSLKDS-EGNLWFGTY------------------LGNISYYNTRLKKFQ  440 (781)
T ss_dssp             BSSCEEEEETTEEEEECC------CCCSBEEEEEECT-TSCEEEEET------------------TEEEEEECSSSCEEE
T ss_pred             CCCcEEEEECCCCeEEEcc-CCCCCCCcceEEEEECC-CCCEEEEec------------------cCCEEEEcCCCCcEE
Confidence            6789999999877666542 11122335678899998 599999764                  357999999888777


Q ss_pred             EeecC---CCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecC------CCCCCceeeCCCCCEEEEec
Q 019290          195 VMYNG---LSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEM------PRFPDNIKSDSKGEFWIAMN  265 (343)
Q Consensus       195 ~~~~~---~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~------~~~p~~i~~d~~G~lwi~~~  265 (343)
                      .+...   ......++.++++ .+|++..  ++|++++..+    .....+...      ......++.|++|+||+++.
T Consensus       441 ~~~~~~~~~~~v~~i~~d~~g-~lwigt~--~Gl~~~~~~~----~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~  513 (781)
T 3v9f_A          441 IIELEKNELLDVRVFYEDKNK-KIWIGTH--AGVFVIDLAS----KKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTF  513 (781)
T ss_dssp             ECCSTTTCCCCEEEEEECTTS-EEEEEET--TEEEEEESSS----SSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEES
T ss_pred             EeccCCCCCCeEEEEEECCCC-CEEEEEC--CceEEEeCCC----CeEEecccCcccccccceeEEEEEcCCCCEEEEEc
Confidence            65431   1234566666555 4777654  6899999765    223333221      12234577899999999997


Q ss_pred             cCCCccccccccccccccCCCcccCCCeEEEECCCCCEEEEeeCCCCCccCCceeEEEe-CCEEEEecCCCCeE-EEEc
Q 019290          266 SARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEGNTLNSVSEVQEY-GEYLYTGSSVQPYV-VVIK  342 (343)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~~~~i-~~~~  342 (343)
                      .                         ++|+++|++++.+..+..+.+.....+..+.++ +|+||+++.  +-+ .+|+
T Consensus       514 ~-------------------------~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~--~Glv~~~d  565 (781)
T 3v9f_A          514 G-------------------------GGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATG--EGLVCFPS  565 (781)
T ss_dssp             S-------------------------SCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEET--TEEEEESC
T ss_pred             C-------------------------CCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEEC--CCceEEEC
Confidence            3                         389999998877777765555445567777776 899999997  335 6654

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=99.75  E-value=8e-16  Score=149.45  Aligned_cols=193  Identities=20%  Similarity=0.175  Sum_probs=146.5

Q ss_pred             cCCCCCCCceEEEcCC-CCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCC
Q 019290           30 QLPGVVGPESLAFDCN-GEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTC  108 (343)
Q Consensus        30 ~~~~~~~p~~l~~d~~-g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~  108 (343)
                      +++++..|..|++|+. +.++|++...++|++++++++....+..                   .....|.||+++...+
T Consensus       344 ~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~-------------------~~~~~p~GlAvD~~~~  404 (619)
T 3s94_A          344 QLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVT-------------------AQIAHPDGIAVDWVAR  404 (619)
T ss_dssp             CCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-------------------SSCSCCCEEEEETTTT
T ss_pred             eccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEE-------------------CCCCCcCceEEecccC
Confidence            4456778999999984 6666788889999999998765544431                   2345789999997688


Q ss_pred             eEEEEeCCCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEe
Q 019290          109 DLYIADAYFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYD  187 (343)
Q Consensus       109 ~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d  187 (343)
                      +||+++...+ |.++++++...+.+..    ..+..|++|++|+..|.||++|.+.                ..+|++.+
T Consensus       405 ~lY~tD~~~~~I~v~~~~G~~~~~l~~----~~l~~P~~iavdp~~G~ly~tD~g~----------------~~~I~r~~  464 (619)
T 3s94_A          405 NLYWTDTGTDRIEVTRLNGTMRKILIS----EDLEEPRAIVLDPMVGYMYWTDWGE----------------IPKIERAA  464 (619)
T ss_dssp             EEEEEETTTTEEEEEETTSCSCEEEEC----TTCCSEEEEEEETTTTEEEEEECSS----------------SCEEEEEE
T ss_pred             cEEEEeCCCCcEEEEeCCCCeEEEEEE----CCCCCeeeEEEEcCCCcEEEecCCC----------------CCEEEEEc
Confidence            9999997654 8889888654444432    1346799999998559999999751                35799999


Q ss_pred             CCCCceEEee-cCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeec-CCCCCCceeeCCCCCEEEEec
Q 019290          188 PLKKNVTVMY-NGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAE-MPRFPDNIKSDSKGEFWIAMN  265 (343)
Q Consensus       188 ~~~~~~~~~~-~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~G~lwi~~~  265 (343)
                      .++.....+. ..+..|+|++++++++.|||+++..++|+++++++.    ..+.+.. .-..|.+++++.+ +||++++
T Consensus       465 ~dG~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~----~~~~~~~~~l~~P~glav~~~-~ly~tD~  539 (619)
T 3s94_A          465 LDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGT----GRRVLVEDKIPHIFGFTLLGD-YVYWTDW  539 (619)
T ss_dssp             TTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSC----CCEEEEECCCCSSCCEEEETT-EEEEECT
T ss_pred             cCCCccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCC----ceEEEeccCCCCcEEEEEECC-EEEEeec
Confidence            8855554444 357889999999988899999999999999999873    3333332 2346999999865 8999998


Q ss_pred             c
Q 019290          266 S  266 (343)
Q Consensus       266 ~  266 (343)
                      .
T Consensus       540 ~  540 (619)
T 3s94_A          540 Q  540 (619)
T ss_dssp             T
T ss_pred             C
Confidence            7

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=99.73  E-value=1.6e-15  Score=150.62  Aligned_cols=219  Identities=15%  Similarity=0.179  Sum_probs=155.8

Q ss_pred             cCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCCCe-EEEEeCCCCe----
Q 019290           54 SDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFG-LMVVGPNGGQ----  128 (343)
Q Consensus        54 ~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~~g-i~~~d~~~~~----  128 (343)
                      ....|.+++..+.....+.                    .....+.+|+++..++.||+++...+ |+++++++..    
T Consensus       402 n~~~Ir~i~l~~~~~~~l~--------------------~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~  461 (791)
T 3m0c_C          402 NRHEVRKMTLDRSEYTSLI--------------------PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS  461 (791)
T ss_dssp             CBSSEEEECTTSCCCEEEE--------------------CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------
T ss_pred             cccceeEeeccCCcceeee--------------------cCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcc
Confidence            3445777777665544432                    23456889999987889999987654 9999987532    


Q ss_pred             EEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEee-cCCCCcceeE
Q 019290          129 AQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMY-NGLSFPNGVA  207 (343)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~-~~~~~~~~i~  207 (343)
                      .+.+..    ..+..+.+|++|+..++||+++..                 .++|++++.++...+.+. ..+..|.+|+
T Consensus       462 ~~~vi~----~~l~~P~GLAvD~~~~~LY~tD~~-----------------~~~I~v~~ldG~~~~~l~~~~l~~P~gIa  520 (791)
T 3m0c_C          462 YDTVIS----RDIQAPDGLAVDWIHSNIYWTDSV-----------------LGTVSVADTKGVKRKTLFRENGSKPRAIV  520 (791)
T ss_dssp             CEEEEC----SSCSCCCEEEEETTTTEEEEEETT-----------------TTEEEEEETTSSSEEEEEECTTCCEEEEE
T ss_pred             eeEEEe----cCCCCcceeeeeecCCcEEEEecC-----------------CCeEEEEeCCCCeEEEEEeCCCCCcceEE
Confidence            222221    123568999999755699999976                 568999999866655554 4677899999


Q ss_pred             EecCCCEEEEEEcCC-CeEEEEEccCccccccceeeec-CCCCCCceeeCC-CCCEEEEeccCCCccccccccccccccC
Q 019290          208 LSNNNSFLLLAESAT-LKILRFWLQGERTTYTPQLFAE-MPRFPDNIKSDS-KGEFWIAMNSARGKIESNKKTAFCEETA  284 (343)
Q Consensus       208 ~~~d~~~lyv~~~~~-~~i~~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~-~G~lwi~~~~~~~~~~~~~~~~~~~~~~  284 (343)
                      +++.++.|||++... ++|++++++|.    ..+.+.. .-..|.+|++|+ .|+||+++..                  
T Consensus       521 VDp~~g~LYwtD~g~~~~I~~~~~dG~----~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~------------------  578 (791)
T 3m0c_C          521 VDPVHGFMYWTDWGTPAKIKKGGLNGV----DIYSLVTENIQWPNGITLDLLSGRLYWVDSK------------------  578 (791)
T ss_dssp             EETTTTEEEEEECSSSCEEEEEETTSC----CEEEEECSSCSCEEEEEEETTTTEEEEEETT------------------
T ss_pred             EecCCCCEEEecCCCCCeEEEEecCCC----ceEEEEeCCCCCceEEEEecCCCeEEEEeCC------------------
Confidence            999888999999765 89999999873    3333433 224699999995 6799999876                  


Q ss_pred             CCcccCCCeEEEECCCCCEEEEeeCCCCCccCCceeEEEeCCEEEEecCCCCeEEEEc
Q 019290          285 KPWFLRDPVGVKFDVNGNVVDVLDGNEGNTLNSVSEVQEYGEYLYTGSSVQPYVVVIK  342 (343)
Q Consensus       285 ~~~~~~~~~v~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~~~~i~~~~  342 (343)
                            .+.|.+++.+|.....+....+ ....+..+..++++||++.+..++|.+++
T Consensus       579 ------~~~I~~~d~dG~~~~~v~~~~~-~l~~P~glav~~~~lYwtD~~~~~I~~~d  629 (791)
T 3m0c_C          579 ------LHSISSIDVNGGNRKTILEDEK-RLAHPFSLAVFEDKVFWTDIINEAIFSAN  629 (791)
T ss_dssp             ------TTEEEEEETTSCSCEEEEECTT-TTSSEEEEEEETTEEEEEETTTTEEEEEE
T ss_pred             ------CCcEEEEecCCCceEEEecCCC-ccCCCCEEEEeCCEEEEEECCCCEEEEEe
Confidence                  4588899998765444432222 23344455557889999999999999885

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=99.73  E-value=6.3e-16  Score=150.21  Aligned_cols=194  Identities=16%  Similarity=0.176  Sum_probs=139.7

Q ss_pred             ccCCCCCCCceEEEcCC-CCeeEEEecCCEEEEEEcCCCCe-EEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCC
Q 019290           29 LQLPGVVGPESLAFDCN-GEGPYVGVSDGRILKWKAANSGW-TEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPV  106 (343)
Q Consensus        29 ~~~~~~~~p~~l~~d~~-g~~l~~~~~~g~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~  106 (343)
                      +.++++..|.+|++++. +.++|++..+++|+++++++... ..+.                   ......|.||+++..
T Consensus        34 ~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~-------------------~~~~~~P~GlAvD~~   94 (619)
T 3s94_A           34 IVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVV-------------------VSGLLSPDGLACDWL   94 (619)
T ss_dssp             --CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEE-------------------CSSCSCEEEEEEETT
T ss_pred             EEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEE-------------------eCCCCCcCeEEEEec
Confidence            34456778999999985 55666888899999999876531 2221                   123357999999987


Q ss_pred             CCeEEEEeCCCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEE
Q 019290          107 TCDLYIADAYFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLK  185 (343)
Q Consensus       107 ~~~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~  185 (343)
                      +++||+++...+ |.++++++...+.+..    ..+..|++|++|+.+|.||++|.+.                ..+|++
T Consensus        95 ~~~ly~~d~~~~~I~v~~~dG~~~~~l~~----~~l~~P~~Iavdp~~g~ly~tD~g~----------------~~~I~r  154 (619)
T 3s94_A           95 GEKLYWTDSETNRIEVSNLDGSLRKVLFW----QELDQPRAIALDPSSGFMYWTDWGE----------------VPKIER  154 (619)
T ss_dssp             TTEEEEEETTTTEEEEEETTSCSCEEEEC----SSCSCCCCEEEETTTTEEEEEECSS----------------SCEEEE
T ss_pred             CCEEEEEeCCCCEEEEEECCCCCEEEEEe----CCCCCCceEEEecCCCeEEEeccCC----------------CCEEEE
Confidence            889999987654 9999998655444432    2246799999998668999999641                357999


Q ss_pred             EeCCCCceEEee-cCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeec-CCCCCCceeeCCCCCEEEE
Q 019290          186 YDPLKKNVTVMY-NGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAE-MPRFPDNIKSDSKGEFWIA  263 (343)
Q Consensus       186 ~d~~~~~~~~~~-~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~G~lwi~  263 (343)
                      .++++...+.+. ..+..|+|++++++++.|||++...++|+++++++..    .+.+.. ....|.+++++++ ++|++
T Consensus       155 ~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~----~~~~~~~~~~~P~gi~~~~~-~ly~t  229 (619)
T 3s94_A          155 AGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTN----RQAVVKGSLPHPFALTLFED-ILYWT  229 (619)
T ss_dssp             EETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCE----EC---------CCCEEESSS-EEEEE
T ss_pred             EECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCc----cEEEEeCCCCCceEEEEeCC-EEEEe
Confidence            998865555544 4677899999999889999999999999999998732    223322 2346999999976 89999


Q ss_pred             ecc
Q 019290          264 MNS  266 (343)
Q Consensus       264 ~~~  266 (343)
                      ++.
T Consensus       230 d~~  232 (619)
T 3s94_A          230 DWS  232 (619)
T ss_dssp             CTT
T ss_pred             cCC
Confidence            887

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=99.73  E-value=1.4e-15  Score=138.02  Aligned_cols=258  Identities=17%  Similarity=0.203  Sum_probs=156.1

Q ss_pred             CCCCCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCC---CCe
Q 019290           33 GVVGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPV---TCD  109 (343)
Q Consensus        33 ~~~~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~---~~~  109 (343)
                      ++..|++|+++++|+ +|++...++|++++  ++....+...+              ........|.||+++++   ++.
T Consensus        29 ~l~~P~~ia~~pdG~-l~V~e~~g~I~~i~--~g~~~~~~~~~--------------v~~~g~~~p~gia~~pdf~~~g~   91 (352)
T 2ism_A           29 GLEVPWALAFLPDGG-MLIAERPGRIRLFR--EGRLSTYAELS--------------VYHRGESGLLGLALHPRFPQEPY   91 (352)
T ss_dssp             CCSCEEEEEECTTSC-EEEEETTTEEEEEE--TTEEEEEEECC--------------CCCSTTCSEEEEEECTTTTTSCE
T ss_pred             CCCCceEEEEcCCCe-EEEEeCCCeEEEEE--CCCccEeecce--------------EeecCCCCceeEEECCCCCCCCE
Confidence            577899999999999 77777779999998  33444443211              01123457999999984   489


Q ss_pred             EEEEeCC------CeEEEEeCCCCeE---EEcccccC--CCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecC
Q 019290          110 LYIADAY------FGLMVVGPNGGQA---QQLASSAG--GIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGD  178 (343)
Q Consensus       110 l~v~~~~------~gi~~~d~~~~~~---~~~~~~~~--~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~  178 (343)
                      ||+++..      +.|.+++.+++++   +.+.....  ......++++++++ ||.||+++......  ...  .....
T Consensus        92 lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~G~~~~~--~~~--~d~~~  166 (352)
T 2ism_A           92 VYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGP-DGMLYVTTGEVYER--ELA--QDLAS  166 (352)
T ss_dssp             EEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECT-TSCEEEECCCTTCG--GGG--GCTTC
T ss_pred             EEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECC-CCCEEEEECCCCCC--ccc--cCCCC
Confidence            9999753      5699998875422   22222111  12235678999999 69999997532100  000  00012


Q ss_pred             CCceEEEEeCCC-------------CceEEeecCCCCcceeEEecCCCEEEEEEcCCCe--------EEEEEccCcc---
Q 019290          179 RSGRLLKYDPLK-------------KNVTVMYNGLSFPNGVALSNNNSFLLLAESATLK--------ILRFWLQGER---  234 (343)
Q Consensus       179 ~~~~v~~~d~~~-------------~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~--------i~~~~~~~~~---  234 (343)
                      ..++|+|+++++             ...+.+..++..|++++++++.+.||+++...+.        |.++...++.   
T Consensus       167 ~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp  246 (352)
T 2ism_A          167 LGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWP  246 (352)
T ss_dssp             SSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTT
T ss_pred             CceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCC
Confidence            247899999875             2334455677889999999965679999887665        5555432210   


Q ss_pred             -ccc-----c-ceeeecC--CCCCCceeeCCCCCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECCC--CCE
Q 019290          235 -TTY-----T-PQLFAEM--PRFPDNIKSDSKGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVN--GNV  303 (343)
Q Consensus       235 -~~~-----~-~~~~~~~--~~~p~~i~~d~~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~--g~~  303 (343)
                       ..+     . .......  ...|.++++ .+|++|+++..                        ...|.+++.+  +..
T Consensus       247 ~~~g~~~~~~~~~p~~~~~~~~ap~G~~~-~~G~l~v~~~~------------------------~~~v~~v~~~~~~~~  301 (352)
T 2ism_A          247 RVVGRGNDPRYRDPLYFWPQGFPPGNLAF-FRGDLYVAGLR------------------------GQALLRLVLEGERGR  301 (352)
T ss_dssp             TCCSCCCCTTSCCCSEECTTCCCEEEEEE-ETTEEEEEETT------------------------TTEEEEEEEEEETTE
T ss_pred             cccCCCCCCCCcCCeEecCCCCCCcceEE-ECCEEEEEECC------------------------CCEEEEEEECCCCcc
Confidence             000     0 0011111  123678888 57899999876                        3466777653  321


Q ss_pred             E-----EEeeCCCCCccCCceeEEEe-CCEEEEecCCCC----------eEEEE
Q 019290          304 V-----DVLDGNEGNTLNSVSEVQEY-GEYLYTGSSVQP----------YVVVI  341 (343)
Q Consensus       304 ~-----~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~~~----------~i~~~  341 (343)
                      .     ..+-.  .  ...+..+... +|.||+++...+          +|+|+
T Consensus       302 ~~~~~~~~~~~--~--~~rp~~v~~~pdG~lyv~~~~~~g~g~~~~~~~~i~ri  351 (352)
T 2ism_A          302 WRVLRVETALS--G--FGRLREVQVGPDGALYVTTSNRDGRGQVRPGDDRVLRL  351 (352)
T ss_dssp             EEEEEEEEEEE--S--SCCEEEEEECTTSCEEEEECSTTTTSCCCTTCSCEEEE
T ss_pred             eeecchheecc--c--CCCeeEEEECCCCcEEEEEeCCCCCCCCCCCCCEEEEe
Confidence            1     11111  1  2245555555 889999997653          68876

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=99.72  E-value=2.4e-15  Score=134.55  Aligned_cols=195  Identities=16%  Similarity=0.169  Sum_probs=143.2

Q ss_pred             CeeeEEEeCCCCeEEEEeCCCe-EEEEeCCCCeE-EEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeee
Q 019290           97 RPLGIKFNPVTCDLYIADAYFG-LMVVGPNGGQA-QQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSI  174 (343)
Q Consensus        97 ~p~gi~~~~~~~~l~v~~~~~g-i~~~d~~~~~~-~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~  174 (343)
                      .+.++.++..++.||++|...+ |++++++++.. +.+...    ....+.++++|+.+++||+++..            
T Consensus        36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~----~l~~p~glavd~~~g~ly~~d~~------------   99 (318)
T 3sov_A           36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVS----GLLSPDGLACDWLGEKLYWTDSE------------   99 (318)
T ss_dssp             EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEE----CCSCCCEEEEETTTTEEEEEETT------------
T ss_pred             ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcC----CCCCccEEEEEcCCCeEEEEECC------------
Confidence            4678888876789999987654 99999986632 111111    13468899999645899999875            


Q ss_pred             eecCCCceEEEEeCCCCceEEee-cCCCCcceeEEecCCCEEEEEEcC-CCeEEEEEccCccccccceeeec-CCCCCCc
Q 019290          175 ATGDRSGRLLKYDPLKKNVTVMY-NGLSFPNGVALSNNNSFLLLAESA-TLKILRFWLQGERTTYTPQLFAE-MPRFPDN  251 (343)
Q Consensus       175 ~~~~~~~~v~~~d~~~~~~~~~~-~~~~~~~~i~~~~d~~~lyv~~~~-~~~i~~~~~~~~~~~~~~~~~~~-~~~~p~~  251 (343)
                           .++|.++++++...+.+. ..+..|+++++++.++.|||++.. .++|+++++++.    ..+.+.. .-..|.+
T Consensus       100 -----~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~----~~~~~~~~~l~~Png  170 (318)
T 3sov_A          100 -----TNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS----SRFIIINSEIYWPNG  170 (318)
T ss_dssp             -----TTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSC----SCEEEECSSCSCEEE
T ss_pred             -----CCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCC----CeEEEEECCCCCccE
Confidence                 568999998865555444 567889999999988899999864 689999999873    2333322 2235999


Q ss_pred             eeeCC-CCCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECCCCCEEEEeeCCCCCccCCceeEEEeCCEEEE
Q 019290          252 IKSDS-KGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEGNTLNSVSEVQEYGEYLYT  330 (343)
Q Consensus       252 i~~d~-~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i  330 (343)
                      +++|+ +++||+++..                        .+.|.++|.+|.....+...   ....+..+..+.+.||+
T Consensus       171 lavd~~~~~lY~aD~~------------------------~~~I~~~d~dG~~~~~~~~~---~~~~P~glav~~~~lyw  223 (318)
T 3sov_A          171 LTLDYEEQKLYWADAK------------------------LNFIHKSNLDGTNRQAVVKG---SLPHPFALTLFEDILYW  223 (318)
T ss_dssp             EEEETTTTEEEEEETT------------------------TTEEEEEETTSCSCEEEECS---CCSCEEEEEEETTEEEE
T ss_pred             EEEeccCCEEEEEECC------------------------CCEEEEEcCCCCceEEEecC---CCCCceEEEEeCCEEEE
Confidence            99997 6789999876                        45889999887654444321   13345555557889999


Q ss_pred             ecCCCCeEEEEcC
Q 019290          331 GSSVQPYVVVIKA  343 (343)
Q Consensus       331 ~~~~~~~i~~~~~  343 (343)
                      +....++|.++++
T Consensus       224 td~~~~~V~~~~~  236 (318)
T 3sov_A          224 TDWSTHSILACNK  236 (318)
T ss_dssp             EETTTTEEEEEET
T ss_pred             EecCCCeEEEEEC
Confidence            9999999999874

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=99.72  E-value=8e-15  Score=142.59  Aligned_cols=218  Identities=13%  Similarity=0.140  Sum_probs=160.8

Q ss_pred             cCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCCCe-EEEEeCCCCeEEEc
Q 019290           54 SDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFG-LMVVGPNGGQAQQL  132 (343)
Q Consensus        54 ~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~~g-i~~~d~~~~~~~~~  132 (343)
                      ....|.+++.++........                  ......|.++++++.++.||+++...+ |++++++++..+.+
T Consensus        13 ~~~~I~~i~l~~~~~~~~~~------------------~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v   74 (628)
T 4a0p_A           13 RRADIRRISLETNNNNVAIP------------------LTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHV   74 (628)
T ss_dssp             ETTEEEEEESSCTTCEEECC------------------CCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred             eCCcEEEEECCCCCcceEEE------------------cCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEE
Confidence            56778999887654332211                  122346889999987899999987654 99999987655554


Q ss_pred             ccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEee-cCCCCcceeEEecC
Q 019290          133 ASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMY-NGLSFPNGVALSNN  211 (343)
Q Consensus       133 ~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~-~~~~~~~~i~~~~d  211 (343)
                      ...    ....|.++|+|+..++||+++..                 .++|.+++.++...+.+. ..+..|++++++|.
T Consensus        75 ~~~----g~~~P~GlAvD~~~~~LY~tD~~-----------------~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~  133 (628)
T 4a0p_A           75 VEF----GLDYPEGMAVDWLGKNLYWADTG-----------------TNRIEVSKLDGQHRQVLVWKDLDSPRALALDPA  133 (628)
T ss_dssp             ECS----SCSCCCEEEEETTTTEEEEEETT-----------------TTEEEEEETTSTTCEEEECSSCCCEEEEEEETT
T ss_pred             EeC----CCCCcceEEEEeCCCEEEEEECC-----------------CCEEEEEecCCCcEEEEEeCCCCCcccEEEccC
Confidence            322    12468999999756899999876                 568999998866555554 67788999999998


Q ss_pred             CCEEEEEEcC-CCeEEEEEccCccccccceeeecCCCCCCceeeCCC-CCEEEEeccCCCccccccccccccccCCCccc
Q 019290          212 NSFLLLAESA-TLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSK-GEFWIAMNSARGKIESNKKTAFCEETAKPWFL  289 (343)
Q Consensus       212 ~~~lyv~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~-G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (343)
                      .+.|||++.. .++|+++++++    ...+.+...-..|.++++|++ ++||+++..                       
T Consensus       134 ~G~lY~tD~g~~~~I~r~~~dG----~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~-----------------------  186 (628)
T 4a0p_A          134 EGFMYWTEWGGKPKIDRAAMDG----SERTTLVPNVGRANGLTIDYAKRRLYWTDLD-----------------------  186 (628)
T ss_dssp             TTEEEEEECSSSCEEEEEETTS----CSCEEEECSCSSEEEEEEETTTTEEEEEETT-----------------------
T ss_pred             CCeEEEeCCCCCCEEEEEeCCC----CceEEEECCCCCcceEEEccccCEEEEEECC-----------------------
Confidence            8899999865 68999999988    333444443346999999985 789999876                       


Q ss_pred             CCCeEEEECCCCCEEEEeeCCCCCccCCceeEEEeCCEEEEecCCCCeEEEEc
Q 019290          290 RDPVGVKFDVNGNVVDVLDGNEGNTLNSVSEVQEYGEYLYTGSSVQPYVVVIK  342 (343)
Q Consensus       290 ~~~~v~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~~~~i~~~~  342 (343)
                       .+.|.++|.+|.....+..  .  ...+..+..++++||++....++|.+++
T Consensus       187 -~~~I~~~d~dG~~~~v~~~--~--l~~P~glav~~~~ly~tD~~~~~I~~~d  234 (628)
T 4a0p_A          187 -TNLIESSNMLGLNREVIAD--D--LPHPFGLTQYQDYIYWTDWSRRSIERAN  234 (628)
T ss_dssp             -TTEEEEEETTSCSCEEEEE--C--CSCEEEEEEETTEEEEEETTTTEEEEEE
T ss_pred             -CCEEEEEcCCCCceEEeec--c--CCCceEEEEECCEEEEecCCCCEEEEEE
Confidence             4588899987754344432  1  2334555567899999999999999986

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=99.70  E-value=4.3e-15  Score=147.48  Aligned_cols=191  Identities=15%  Similarity=0.200  Sum_probs=139.3

Q ss_pred             CCCCCCceEEEcCC-CCeeEEEecCCEEEEEEcCCC----CeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCC
Q 019290           32 PGVVGPESLAFDCN-GEGPYVGVSDGRILKWKAANS----GWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPV  106 (343)
Q Consensus        32 ~~~~~p~~l~~d~~-g~~l~~~~~~g~i~~~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~  106 (343)
                      +++..|.+|+++.. +.++|++..+++|++++.++.    ....+.                   ......|.||+++..
T Consensus       421 ~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi-------------------~~~l~~P~GLAvD~~  481 (791)
T 3m0c_C          421 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-------------------SRDIQAPDGLAVDWI  481 (791)
T ss_dssp             CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEE-------------------CSSCSCCCEEEEETT
T ss_pred             cCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEE-------------------ecCCCCcceeeeeec
Confidence            35668999999984 666678888899999998753    122221                   124457899999986


Q ss_pred             CCeEEEEeCCCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEE
Q 019290          107 TCDLYIADAYFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLK  185 (343)
Q Consensus       107 ~~~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~  185 (343)
                      +++||+++...+ |.++++++...+.+...    .+..|++|++|+..|.||+++.+.                ..+|++
T Consensus       482 ~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~----~l~~P~gIaVDp~~g~LYwtD~g~----------------~~~I~~  541 (791)
T 3m0c_C          482 HSNIYWTDSVLGTVSVADTKGVKRKTLFRE----NGSKPRAIVVDPVHGFMYWTDWGT----------------PAKIKK  541 (791)
T ss_dssp             TTEEEEEETTTTEEEEEETTSSSEEEEEEC----TTCCEEEEEEETTTTEEEEEECSS----------------SCEEEE
T ss_pred             CCcEEEEecCCCeEEEEeCCCCeEEEEEeC----CCCCcceEEEecCCCCEEEecCCC----------------CCeEEE
Confidence            779999997654 99999987665555321    235689999998558999999651                367999


Q ss_pred             EeCCCCceEEee-cCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecC---CCCCCceeeCCCCCEE
Q 019290          186 YDPLKKNVTVMY-NGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEM---PRFPDNIKSDSKGEFW  261 (343)
Q Consensus       186 ~d~~~~~~~~~~-~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~---~~~p~~i~~d~~G~lw  261 (343)
                      +++++...+.+. ..+..|++|++++.++.|||++...++|++++++|.    ..+.+...   -..|.+|+++. ++||
T Consensus       542 ~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~----~~~~v~~~~~~l~~P~glav~~-~~lY  616 (791)
T 3m0c_C          542 GGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG----NRKTILEDEKRLAHPFSLAVFE-DKVF  616 (791)
T ss_dssp             EETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC----SCEEEEECTTTTSSEEEEEEET-TEEE
T ss_pred             EecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCC----ceEEEecCCCccCCCCEEEEeC-CEEE
Confidence            999866655554 456889999999888899999999999999999873    33333321   12466777754 5899


Q ss_pred             EEecc
Q 019290          262 IAMNS  266 (343)
Q Consensus       262 i~~~~  266 (343)
                      ++++.
T Consensus       617 wtD~~  621 (791)
T 3m0c_C          617 WTDII  621 (791)
T ss_dssp             EEETT
T ss_pred             EEECC
Confidence            99987

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.70  E-value=1.6e-15  Score=136.24  Aligned_cols=203  Identities=14%  Similarity=0.191  Sum_probs=133.0

Q ss_pred             CCCCCCceEEEcCCCCeeEEEecCCEEEEEEcCCC--CeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCe
Q 019290           32 PGVVGPESLAFDCNGEGPYVGVSDGRILKWKAANS--GWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCD  109 (343)
Q Consensus        32 ~~~~~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~  109 (343)
                      ..+..|.+|+++++|++++++..+++|++|++++.  ....+..... .      |.    .......|.++++++++++
T Consensus        88 ~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~-~------g~----~~~~~~~P~~ia~~~~~g~  156 (329)
T 3fvz_A           88 NLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQ-P------GS----DQNHFCQPTDVAVEPSTGA  156 (329)
T ss_dssp             TTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTB-C------CC----STTCCSSEEEEEECTTTCC
T ss_pred             CccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCC-C------CC----CccccCCCcEEEEeCCCCe
Confidence            35568999999999995556777899999998765  3333321000 0      00    0123457999999986789


Q ss_pred             EEEEeC-C-CeEEEEeCCCCeEEEcccccC-----CCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCce
Q 019290          110 LYIADA-Y-FGLMVVGPNGGQAQQLASSAG-----GIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGR  182 (343)
Q Consensus       110 l~v~~~-~-~gi~~~d~~~~~~~~~~~~~~-----~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~  182 (343)
                      ||+++. . ..|.+++.++.....+.....     ...+..|+++++|+..|++|+++..                 .++
T Consensus       157 lyv~d~~~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~-----------------~~~  219 (329)
T 3fvz_A          157 VFVSDGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRE-----------------NGR  219 (329)
T ss_dssp             EEEEECSSCCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETT-----------------TTE
T ss_pred             EEEEeCCCCCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECC-----------------CCE
Confidence            999995 3 459999976444443322111     1234669999999932899999876                 568


Q ss_pred             EEEEeCCCCceEEeec---CCCCcceeEEec------CCCEEEEEEcCCCeEEEEEccCccccccceeee---cCCCCCC
Q 019290          183 LLKYDPLKKNVTVMYN---GLSFPNGVALSN------NNSFLLLAESATLKILRFWLQGERTTYTPQLFA---EMPRFPD  250 (343)
Q Consensus       183 v~~~d~~~~~~~~~~~---~~~~~~~i~~~~------d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~---~~~~~p~  250 (343)
                      |.+|++++++......   ....+.+++++|      +++ +|+++....+|++++......   ...+.   .....|.
T Consensus       220 I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~-~~v~~~~~~~v~~~~~~~g~~---~~~~~~~~~~~~~p~  295 (329)
T 3fvz_A          220 IQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGK-PYFGDQEPVQGFVMNFSSGEI---IDVFKPVRKHFDMPH  295 (329)
T ss_dssp             EEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECC-CCTTCSCCCCEEEEETTTCCE---EEEECCSSSCCSSEE
T ss_pred             EEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCC-EEeccCCCcEEEEEEcCCCeE---EEEEcCCCCccCCee
Confidence            9999988666543321   123455566665      444 555555667899998764221   12221   1123588


Q ss_pred             ceeeCCCCCEEEEecc
Q 019290          251 NIKSDSKGEFWIAMNS  266 (343)
Q Consensus       251 ~i~~d~~G~lwi~~~~  266 (343)
                      ++++|++|++|+++..
T Consensus       296 ~ia~~~dG~lyvad~~  311 (329)
T 3fvz_A          296 DIVASEDGTVYIGDAH  311 (329)
T ss_dssp             EEEECTTSEEEEEESS
T ss_pred             EEEECCCCCEEEEECC
Confidence            9999999999999876

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.68  E-value=1.1e-14  Score=134.93  Aligned_cols=192  Identities=14%  Similarity=0.142  Sum_probs=132.6

Q ss_pred             CCCceEEEcCCCCeeEEEecCC--EEEEEEcCCCCeE-EeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEE
Q 019290           35 VGPESLAFDCNGEGPYVGVSDG--RILKWKAANSGWT-EFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLY  111 (343)
Q Consensus        35 ~~p~~l~~d~~g~~l~~~~~~g--~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~  111 (343)
                      ..|. ++++++|+.+|+...++  +|+++++.++... .+...                .......|++++++++++.||
T Consensus       172 ~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~----------------~~~~~~~p~~iav~p~~g~ly  234 (409)
T 3hrp_A          172 KGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQL----------------GSTFSGKIGAVALDETEEWLY  234 (409)
T ss_dssp             CBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEEC----------------CTTSCSCCCBCEECTTSSEEE
T ss_pred             CCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeec----------------cchhcCCcEEEEEeCCCCeEE
Confidence            3577 99999999778665543  8999998764432 22100                011345689999998778999


Q ss_pred             EEeCCCeEEEEeCCCCeEEEcccc-cCCCCccCcc-eeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCC
Q 019290          112 IADAYFGLMVVGPNGGQAQQLASS-AGGIPFRFTN-DLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPL  189 (343)
Q Consensus       112 v~~~~~gi~~~d~~~~~~~~~~~~-~~~~~~~~~~-~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~  189 (343)
                      +++....|+++|++++....+... ..+.....|. ++++++.+++||+++..                 .+.|++++.+
T Consensus       235 v~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~-----------------~~~I~~~~~~  297 (409)
T 3hrp_A          235 FVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQN-----------------LSSVYKITPD  297 (409)
T ss_dssp             EECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETT-----------------TTEEEEECTT
T ss_pred             EEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCC-----------------CCEEEEEecC
Confidence            986544599999988765544211 1111112234 99999944899999875                 5689999987


Q ss_pred             CCceEEeecC---------------CCCcceeEEecCCCEEEEEEc-CCCeEEEEEccCccccccceeeecC--------
Q 019290          190 KKNVTVMYNG---------------LSFPNGVALSNNNSFLLLAES-ATLKILRFWLQGERTTYTPQLFAEM--------  245 (343)
Q Consensus       190 ~~~~~~~~~~---------------~~~~~~i~~~~d~~~lyv~~~-~~~~i~~~~~~~~~~~~~~~~~~~~--------  245 (343)
                      + ....+...               +..|++++++++|. ||+++. .+++|.++++..    +....+...        
T Consensus       298 g-~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~-lyvad~~~~~~I~~~~~~~----G~v~~~~g~~~~~g~~~  371 (409)
T 3hrp_A          298 G-ECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN-FYIVDGFKGYCLRKLDILD----GYVSTVAGQVDVASQID  371 (409)
T ss_dssp             C-CEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC-EEEEETTTTCEEEEEETTT----TEEEEEEECTTCBSCCC
T ss_pred             C-CEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC-EEEEeCCCCCEEEEEECCC----CEEEEEeCCCCCCCcCC
Confidence            4 34443321               45699999999987 999999 999999999543    122222111        


Q ss_pred             -------CCCCCceeeCCCCCEEEEecc
Q 019290          246 -------PRFPDNIKSDSKGEFWIAMNS  266 (343)
Q Consensus       246 -------~~~p~~i~~d~~G~lwi~~~~  266 (343)
                             -..|.++++|++|+|||++..
T Consensus       372 g~~~~~~~~~P~giavd~~g~lyVad~~  399 (409)
T 3hrp_A          372 GTPLEATFNYPYDICYDGEGGYWIAEAW  399 (409)
T ss_dssp             BSTTTCCBSSEEEEEECSSSEEEEEEST
T ss_pred             CChhceEeCCceEEEEcCCCCEEEEECC
Confidence                   125889999999999999987

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=99.68  E-value=5.7e-16  Score=152.71  Aligned_cols=209  Identities=15%  Similarity=0.198  Sum_probs=148.5

Q ss_pred             CCCCCCceEEEcCCC-CeeEEEecCCEEEEEEcCCC----CeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCC
Q 019290           32 PGVVGPESLAFDCNG-EGPYVGVSDGRILKWKAANS----GWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPV  106 (343)
Q Consensus        32 ~~~~~p~~l~~d~~g-~~l~~~~~~g~i~~~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~  106 (343)
                      +.+..|.+|++++++ .++|++..+++|+++++++.    ....                   ........|.||++++.
T Consensus       403 ~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~-------------------~i~~~~~~P~glavD~~  463 (699)
T 1n7d_A          403 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT-------------------VISRDIQAPDGLAVDWI  463 (699)
T ss_dssp             CCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCC-------------------BCCSCC--CCCEECCCS
T ss_pred             ccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEE-------------------EEeCCCCCcceEEEEee
Confidence            455689999999864 55556677889999998752    1111                   11123446889999965


Q ss_pred             CCeEEEEeCCC-eEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEE
Q 019290          107 TCDLYIADAYF-GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLK  185 (343)
Q Consensus       107 ~~~l~v~~~~~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~  185 (343)
                      +++||+++... .|.++++++...+.+...    .+..|++|++|+.+|.||+++...                .++|++
T Consensus       464 ~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~----~~~~P~giavDp~~g~ly~td~~~----------------~~~I~~  523 (699)
T 1n7d_A          464 HSNIYWTDSVLGTVSVADTKGVKRKTLFRE----QGSKPRAIVVDPVHGFMYWTDWGT----------------PAKIKK  523 (699)
T ss_dssp             SSBCEECCTTTSCEEEEBSSSCCEEEECCC----SSCCCCCEECCSSSSCCEECCCSS----------------SCCEEB
T ss_pred             CCcEEEEeccCCeEEEEecCCCceEEEEeC----CCCCcceEEEccCCCcEEEcccCC----------------CCeEEE
Confidence            88999998664 499999987665554322    235689999998558899988641                367999


Q ss_pred             EeCCCCceEEee-cCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeec---CCCCCCceeeCCCCCEE
Q 019290          186 YDPLKKNVTVMY-NGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAE---MPRFPDNIKSDSKGEFW  261 (343)
Q Consensus       186 ~d~~~~~~~~~~-~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~~p~~i~~d~~G~lw  261 (343)
                      +++++...+.+. ..+..|++|+++++++.|||+++..++|+++++++.    ..+.+..   ....|.+|++|.+ +||
T Consensus       524 ~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~----~~~~~~~~~~~~~~P~glavd~~-~ly  598 (699)
T 1n7d_A          524 GGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG----NRKTILEDEKRLAHPFSLAVFED-KVF  598 (699)
T ss_dssp             CCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSS----CCEEECCCSSSCSSCCCCEEETT-EEE
T ss_pred             EeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCC----ceEEEEecCCcCCCceEeEEECC-EEE
Confidence            988754444333 457789999999998899999999999999999872    3333332   1246999999976 688


Q ss_pred             EEeccCCCccccccccccccccCCCcccCCCeEEEECC-CCCEEEEee
Q 019290          262 IAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDV-NGNVVDVLD  308 (343)
Q Consensus       262 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~  308 (343)
                      ++.+.                        .+.|.++++ +|+....+.
T Consensus       599 wtd~~------------------------~~~V~~~d~~~G~~~~~i~  622 (699)
T 1n7d_A          599 WTDII------------------------NEAIFSANRLTGSDVNLLA  622 (699)
T ss_dssp             EECST------------------------TTCEEEEETTTEEEEECCC
T ss_pred             EEeCC------------------------CCeEEEEEccCCCceEEee
Confidence            88776                        457888987 566665553

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.67  E-value=2.3e-14  Score=125.65  Aligned_cols=201  Identities=17%  Similarity=0.292  Sum_probs=141.8

Q ss_pred             CcCCeeeEEEeCCCCeEEEEeCC-CeEEEEeCCCCeEEEccccc-CCCCccCcceeEEe-CCCCeEEEEeCCcccccccc
Q 019290           94 LCGRPLGIKFNPVTCDLYIADAY-FGLMVVGPNGGQAQQLASSA-GGIPFRFTNDLDID-PNTGIVYFTDSSIYFQRRQY  170 (343)
Q Consensus        94 ~~~~p~gi~~~~~~~~l~v~~~~-~gi~~~d~~~~~~~~~~~~~-~~~~~~~~~~i~~d-~~dg~l~v~~~~~~~~~~~~  170 (343)
                      ....|.++++++ ++++|+++.. .+|.++|+++.....+.... .......+.+++++ + +|++|+++...       
T Consensus        28 ~~~~p~~v~~~~-~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~-~g~l~v~~~~~-------   98 (286)
T 1q7f_A           28 QFTEPSGVAVNA-QNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRN-SGDIIVTERSP-------   98 (286)
T ss_dssp             CBSCEEEEEECT-TCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETT-TTEEEEEECGG-------
T ss_pred             ccCCCceEEECC-CCCEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcC-CCeEEEEcCCC-------
Confidence            445789999998 7899999755 45999999855444442211 11223568899995 6 69999988531       


Q ss_pred             eeeeeecCCCceEEEEeCCCCceEEee-cCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeec--CCC
Q 019290          171 FMSIATGDRSGRLLKYDPLKKNVTVMY-NGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAE--MPR  247 (343)
Q Consensus       171 ~~~~~~~~~~~~v~~~d~~~~~~~~~~-~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~  247 (343)
                               .+.|+++|.++.....+. .....+.+++++++++ +|+++...++|++|+.++.    ....+..  ...
T Consensus        99 ---------~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~g~----~~~~~~~~~~~~  164 (286)
T 1q7f_A           99 ---------THQIQIYNQYGQFVRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQNGN----VLHKFGCSKHLE  164 (286)
T ss_dssp             ---------GCEEEEECTTSCEEEEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTTSC----EEEEEECTTTCS
T ss_pred             ---------CCEEEEECCCCcEEEEecCccCCCceEEEEeCCCC-EEEEECCCCEEEEEcCCCC----EEEEeCCCCccC
Confidence                     357999996544343332 2345789999999886 8999888899999997652    2222221  112


Q ss_pred             CCCceeeCCCCCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECCCCCEEEEeeCCCCCccCCceeEEEe-CC
Q 019290          248 FPDNIKSDSKGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEGNTLNSVSEVQEY-GE  326 (343)
Q Consensus       248 ~p~~i~~d~~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~-~g  326 (343)
                      .|.++++|++|++|+++..                        .+.|.++|++++.+..+... + ....+..+..+ +|
T Consensus       165 ~p~~i~~~~~g~l~v~~~~------------------------~~~i~~~~~~g~~~~~~~~~-g-~~~~p~~i~~d~~G  218 (286)
T 1q7f_A          165 FPNGVVVNDKQEIFISDNR------------------------AHCVKVFNYEGQYLRQIGGE-G-ITNYPIGVGINSNG  218 (286)
T ss_dssp             SEEEEEECSSSEEEEEEGG------------------------GTEEEEEETTCCEEEEESCT-T-TSCSEEEEEECTTC
T ss_pred             CcEEEEECCCCCEEEEECC------------------------CCEEEEEcCCCCEEEEEccC-C-ccCCCcEEEECCCC
Confidence            4888999999999999875                        35889999999877766532 2 13455666665 78


Q ss_pred             EEEEecCCCC-eEEEEcC
Q 019290          327 YLYTGSSVQP-YVVVIKA  343 (343)
Q Consensus       327 ~l~i~~~~~~-~i~~~~~  343 (343)
                      +||+++...+ .|.++++
T Consensus       219 ~l~v~~~~~~~~i~~~~~  236 (286)
T 1q7f_A          219 EILIADNHNNFNLTIFTQ  236 (286)
T ss_dssp             CEEEEECSSSCEEEEECT
T ss_pred             CEEEEeCCCCEEEEEECC
Confidence            9999999887 8988864

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=99.67  E-value=1.6e-14  Score=131.11  Aligned_cols=263  Identities=14%  Similarity=0.149  Sum_probs=159.6

Q ss_pred             CCCCCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCC---CCe
Q 019290           33 GVVGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPV---TCD  109 (343)
Q Consensus        33 ~~~~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~---~~~  109 (343)
                      ++..|++|+++++|+ +|++...++|+++++++ . ..+...+              ........|.||+++++   ++.
T Consensus        27 ~l~~P~~ia~~pdG~-l~V~e~~g~I~~~d~~G-~-~~~~~~~--------------v~~~g~~g~~gia~~pdf~~~g~   89 (354)
T 3a9g_A           27 DLEVPWSIAPLGGGR-YLVTERPGRLVLISPSG-K-KLVASFD--------------VANVGEAGLLGLALHPEFPKKSW   89 (354)
T ss_dssp             SCSCEEEEEEEETTE-EEEEETTTEEEEECSSC-E-EEEEECC--------------CCCSTTCSEEEEEECTTTTTSCE
T ss_pred             CCCCCeEEEEcCCCe-EEEEeCCCEEEEEeCCC-c-eEeeccc--------------eeecCCCceeeEEeCCCCCcCCE
Confidence            677899999999999 77777779999997544 3 4443211              00122346899999984   589


Q ss_pred             EEEEeCC--------CeEEEEeCCCC--e---EEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeee
Q 019290          110 LYIADAY--------FGLMVVGPNGG--Q---AQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIAT  176 (343)
Q Consensus       110 l~v~~~~--------~gi~~~d~~~~--~---~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~  176 (343)
                      ||++...        +.|.+++.+.+  .   .+.+...........+++|++++ ||.||+++.......  ..  ...
T Consensus        90 lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~p-DG~Lyvt~G~~~~~~--~~--~d~  164 (354)
T 3a9g_A           90 VYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGP-DGMLYITTGDAADPR--LA--QDL  164 (354)
T ss_dssp             EEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECT-TSCEEEECCCTTCGG--GG--TCT
T ss_pred             EEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECC-CCcEEEEECCCCCCc--cc--cCC
Confidence            9999753        56999987654  1   22222211122235678999999 699999874321000  00  000


Q ss_pred             cCCCceEEEEeCCCC--------ceEEeecCCCCcceeEEecCCCEEEEEEcCCCe---EEEEEccCcc---------cc
Q 019290          177 GDRSGRLLKYDPLKK--------NVTVMYNGLSFPNGVALSNNNSFLLLAESATLK---ILRFWLQGER---------TT  236 (343)
Q Consensus       177 ~~~~~~v~~~d~~~~--------~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~---i~~~~~~~~~---------~~  236 (343)
                      ....++|+|+++++.        ..+.+..++..|++++++++...||+++...+.   |.++...++.         ..
T Consensus       165 ~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~  244 (354)
T 3a9g_A          165 SSLAGKILRVDEEGRPPADNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGR  244 (354)
T ss_dssp             TCCSSEEEEECTTSCCCTTSSSTTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCC
T ss_pred             CCCCeEEEEEcCCCCCCCCCCCCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCC
Confidence            112478999998754        235566678889999999955569999876544   5555422210         00


Q ss_pred             ccc-eeeecC---CCCCCceee-------CCCCCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECCC--CCE
Q 019290          237 YTP-QLFAEM---PRFPDNIKS-------DSKGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVN--GNV  303 (343)
Q Consensus       237 ~~~-~~~~~~---~~~p~~i~~-------d~~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~--g~~  303 (343)
                      ... ......   ...|.++++       +.+|++|+++..                        ...|.+++.+  ++.
T Consensus       245 ~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~------------------------~~~v~~~~~~~~g~~  300 (354)
T 3a9g_A          245 GEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLR------------------------GSMLAAVNFGDNMEV  300 (354)
T ss_dssp             TTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETT------------------------TTEEEEEEECGGGCE
T ss_pred             CCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcC------------------------CCEEEEEEECCCCcc
Confidence            000 111111   124777887       467899999876                        3467777654  443


Q ss_pred             EEEeeCCCCCccCCceeEEEe-CCEEEEecCC-CC---------eEEEEc
Q 019290          304 VDVLDGNEGNTLNSVSEVQEY-GEYLYTGSSV-QP---------YVVVIK  342 (343)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~-~~---------~i~~~~  342 (343)
                      ........+ ....+..+... +|.||+++.. ..         +|+|+.
T Consensus       301 ~~~~~~~~~-~~~rp~~v~~~pDG~lyv~~~~~~G~g~~~~~~g~i~ri~  349 (354)
T 3a9g_A          301 RKISTFFKN-VFGRLRDVVIDDDGGILISTSNRDGRGSLRAGDDKILKIV  349 (354)
T ss_dssp             EEEEEECTT-TSCCEEEEEECTTSCEEEEECTTSSSSCCCTTCSCEEEEE
T ss_pred             cceeeeccC-CCCCeeEEEECCCCcEEEEEeCCCCCcCCCCCCCEEEEEe
Confidence            211111111 12345555555 8899999874 32         898875

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=99.67  E-value=2.5e-15  Score=148.16  Aligned_cols=220  Identities=15%  Similarity=0.161  Sum_probs=151.8

Q ss_pred             cCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCCC-eEEEEeCCC----Ce
Q 019290           54 SDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYF-GLMVVGPNG----GQ  128 (343)
Q Consensus        54 ~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~~-gi~~~d~~~----~~  128 (343)
                      +.+.|.+++..+.+...+                    ......|.++++++.++.||+++... .|+++++++    ..
T Consensus       384 ~~~~I~~id~~~~~~~~~--------------------~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~  443 (699)
T 1n7d_A          384 NRHEVRKMTLDRSEYTSL--------------------IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS  443 (699)
T ss_dssp             CTTC-CEECTTSCCEECC--------------------SCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CC
T ss_pred             CccceEEEeCCCCcceee--------------------eccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcc
Confidence            345678888776554332                    13345688999998678999998664 499999875    12


Q ss_pred             EEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEee-cCCCCcceeE
Q 019290          129 AQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMY-NGLSFPNGVA  207 (343)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~-~~~~~~~~i~  207 (343)
                      ...+.    ...+..+.+|++|+.+++||+++..                 .++|+++++++...+.+. ..+..|++++
T Consensus       444 ~~~~i----~~~~~~P~glavD~~~g~LY~tD~~-----------------~~~I~v~d~dg~~~~~l~~~~~~~P~gia  502 (699)
T 1n7d_A          444 YDTVI----SRDIQAPDGLAVDWIHSNIYWTDSV-----------------LGTVSVADTKGVKRKTLFREQGSKPRAIV  502 (699)
T ss_dssp             CCCBC----CSCC--CCCEECCCSSSBCEECCTT-----------------TSCEEEEBSSSCCEEEECCCSSCCCCCEE
T ss_pred             eEEEE----eCCCCCcceEEEEeeCCcEEEEecc-----------------CCeEEEEecCCCceEEEEeCCCCCcceEE
Confidence            11111    1123468899999645899998865                 567999998866655554 3567899999


Q ss_pred             EecCCCEEEEEEcCC-CeEEEEEccCccccccceeeec-CCCCCCceeeCCC-CCEEEEeccCCCccccccccccccccC
Q 019290          208 LSNNNSFLLLAESAT-LKILRFWLQGERTTYTPQLFAE-MPRFPDNIKSDSK-GEFWIAMNSARGKIESNKKTAFCEETA  284 (343)
Q Consensus       208 ~~~d~~~lyv~~~~~-~~i~~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~-G~lwi~~~~~~~~~~~~~~~~~~~~~~  284 (343)
                      ++++++.|||++... ++|+++++++.    ..+.+.. .-..|.+|++|++ ++||+++..                  
T Consensus       503 vDp~~g~ly~td~~~~~~I~~~~~dG~----~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~------------------  560 (699)
T 1n7d_A          503 VDPVHGFMYWTDWGTPAKIKKGGLNGV----DIYSLVTENIQWPNGITLDLLSGRLYWVDSK------------------  560 (699)
T ss_dssp             CCSSSSCCEECCCSSSCCEEBCCSSSC----CCCEESCSSCSSCCCEEECTTTCCEEEEETT------------------
T ss_pred             EccCCCcEEEcccCCCCeEEEEeCCCC----CeeEEEeCCCCCccEEEEeccCCEEEEEecC------------------
Confidence            999888899998765 79999998763    2233322 2246999999975 799999876                  


Q ss_pred             CCcccCCCeEEEECCCCCEEEEeeCCCCCccCCceeEEEeCCEEEEecCCCCeEEEEcC
Q 019290          285 KPWFLRDPVGVKFDVNGNVVDVLDGNEGNTLNSVSEVQEYGEYLYTGSSVQPYVVVIKA  343 (343)
Q Consensus       285 ~~~~~~~~~v~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~~~~i~~~~~  343 (343)
                            .+.|.+++.+|.....+..... ....+..+..+.++||++.+..++|.++++
T Consensus       561 ------~~~I~~~d~dG~~~~~~~~~~~-~~~~P~glavd~~~lywtd~~~~~V~~~d~  612 (699)
T 1n7d_A          561 ------LHSISSIDVNGGNRKTILEDEK-RLAHPFSLAVFEDKVFWTDIINEAIFSANR  612 (699)
T ss_dssp             ------TTEEEEECSSSSCCEEECCCSS-SCSSCCCCEEETTEEEEECSTTTCEEEEET
T ss_pred             ------CCeEEEEccCCCceEEEEecCC-cCCCceEeEEECCEEEEEeCCCCeEEEEEc
Confidence                  4588999998765444432212 123344444567899999999999999863

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.65  E-value=7.1e-14  Score=125.55  Aligned_cols=233  Identities=12%  Similarity=0.093  Sum_probs=155.1

Q ss_pred             CCceEEEcCCCCeeEEE-ecCCEEEEEEcCCCCeE-EeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEE
Q 019290           36 GPESLAFDCNGEGPYVG-VSDGRILKWKAANSGWT-EFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIA  113 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~-~~~g~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~  113 (343)
                      .|++++++ +++ +|+. ..++.|..+|+.+.+.. .+.                     ....|.++++++ ++.+|++
T Consensus        45 ~~~~i~~~-~~~-lyv~~~~~~~v~viD~~t~~~~~~i~---------------------~~~~p~~i~~~~-~g~lyv~  100 (328)
T 3dsm_A           45 VAQSMVIR-DGI-GWIVVNNSHVIFAIDINTFKEVGRIT---------------------GFTSPRYIHFLS-DEKAYVT  100 (328)
T ss_dssp             CEEEEEEE-TTE-EEEEEGGGTEEEEEETTTCCEEEEEE---------------------CCSSEEEEEEEE-TTEEEEE
T ss_pred             cceEEEEE-CCE-EEEEEcCCCEEEEEECcccEEEEEcC---------------------CCCCCcEEEEeC-CCeEEEE
Confidence            58899885 344 6654 45688999999887653 331                     224689999977 6799999


Q ss_pred             e-CCCeEEEEeCCCCeEEEcccccC-CCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCC
Q 019290          114 D-AYFGLMVVGPNGGQAQQLASSAG-GIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKK  191 (343)
Q Consensus       114 ~-~~~gi~~~d~~~~~~~~~~~~~~-~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~  191 (343)
                      + ....|.++|++++++........ ......+.+++++  ++++|+++.+                ..+.|.++|++++
T Consensus       101 ~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~--~~~lyv~~~~----------------~~~~v~viD~~t~  162 (328)
T 3dsm_A          101 QIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQY--GKYVYVNCWS----------------YQNRILKIDTETD  162 (328)
T ss_dssp             EBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEE--TTEEEEEECT----------------TCCEEEEEETTTT
T ss_pred             ECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEE--CCEEEEEcCC----------------CCCEEEEEECCCC
Confidence            8 44669999999988764332221 1112367889984  4899998752                0457999999888


Q ss_pred             ceEEeecCCCCcceeEEecCCCEEEEEEcCC----------CeEEEEEccCccccccceeee-cCCCCCCceeeCCCC-C
Q 019290          192 NVTVMYNGLSFPNGVALSNNNSFLLLAESAT----------LKILRFWLQGERTTYTPQLFA-EMPRFPDNIKSDSKG-E  259 (343)
Q Consensus       192 ~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~----------~~i~~~~~~~~~~~~~~~~~~-~~~~~p~~i~~d~~G-~  259 (343)
                      ++.........|.+++++++|+ +|++....          +.|+++|..+...   .+.+. .....|.+++++++| .
T Consensus       163 ~~~~~i~~g~~p~~i~~~~dG~-l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v---~~~~~~~~g~~p~~la~~~d~~~  238 (328)
T 3dsm_A          163 KVVDELTIGIQPTSLVMDKYNK-MWTITDGGYEGSPYGYEAPSLYRIDAETFTV---EKQFKFKLGDWPSEVQLNGTRDT  238 (328)
T ss_dssp             EEEEEEECSSCBCCCEECTTSE-EEEEBCCBCTTCSSCBCCCEEEEEETTTTEE---EEEEECCTTCCCEEEEECTTSCE
T ss_pred             eEEEEEEcCCCccceEEcCCCC-EEEEECCCccCCccccCCceEEEEECCCCeE---EEEEecCCCCCceeEEEecCCCE
Confidence            7654444456789999999886 77776654          7899999765221   11221 112358999999976 5


Q ss_pred             EEEEeccCCCccccccccccccccCCCcccCCCeEEEECCCCCEEEEee-CCCCCccCCceeEEE--eCCEEEEec----
Q 019290          260 FWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLD-GNEGNTLNSVSEVQE--YGEYLYTGS----  332 (343)
Q Consensus       260 lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~-~~~~~~~~~~~~~~~--~~g~l~i~~----  332 (343)
                      +|++. .                          .|+++|.+...+.... .+.+  ...+..+..  ++++||+++    
T Consensus       239 lyv~~-~--------------------------~v~~~d~~t~~~~~~~~~~~~--~~~p~gi~vdp~~g~lyva~~~~y  289 (328)
T 3dsm_A          239 LYWIN-N--------------------------DIWRMPVEADRVPVRPFLEFR--DTKYYGLTVNPNNGEVYVADAIDY  289 (328)
T ss_dssp             EEEES-S--------------------------SEEEEETTCSSCCSSCSBCCC--SSCEEEEEECTTTCCEEEEECTTS
T ss_pred             EEEEc-c--------------------------EEEEEECCCCceeeeeeecCC--CCceEEEEEcCCCCeEEEEccccc
Confidence            66653 3                          5778988543221111 1111  234555544  378999999    


Q ss_pred             CCCCeEEEEcC
Q 019290          333 SVQPYVVVIKA  343 (343)
Q Consensus       333 ~~~~~i~~~~~  343 (343)
                      ..++.|.+|++
T Consensus       290 ~~~~~V~v~d~  300 (328)
T 3dsm_A          290 QQQGIVYRYSP  300 (328)
T ss_dssp             SSEEEEEEECT
T ss_pred             ccCCEEEEECC
Confidence            78889999874

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=99.64  E-value=7.6e-14  Score=139.27  Aligned_cols=237  Identities=14%  Similarity=0.129  Sum_probs=149.2

Q ss_pred             CceEEEcCCCCeeEEEecCCEEEEEEcCCC---CeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEE
Q 019290           37 PESLAFDCNGEGPYVGVSDGRILKWKAANS---GWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIA  113 (343)
Q Consensus        37 p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~  113 (343)
                      ..+++.|++|+ +|+++. ++++++++.++   .+..+..... .            .......+..+..++ +++||++
T Consensus       326 v~~i~~D~~g~-lWiGt~-~Gl~~~~~~~~~~~~~~~~~~~~~-~------------~~l~~~~v~~i~~d~-~g~lWig  389 (758)
T 3ott_A          326 FYSLFRDSKGF-YWFGGA-NGLIRFTDPAGERHDAIWYRMGDK-T------------YPLSHNRIRHIYEDK-EQQLWIA  389 (758)
T ss_dssp             EEEEEECTTCC-EEEEET-TEEEEESCTTSSCCCCEEECTTCS-S------------SCCSCSCEEEEEECT-TSCEEEE
T ss_pred             EEEEEEcCCCC-EEEeeC-CcceeecccccccceeEEeccCCc-C------------CCCCCCceEEEEECC-CCCEEEE
Confidence            56899999999 898885 57999988753   2333321000 0            001122467788887 8999999


Q ss_pred             eCCCeEEEEeCCCCeEEEcccccC-C-CCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCC-
Q 019290          114 DAYFGLMVVGPNGGQAQQLASSAG-G-IPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLK-  190 (343)
Q Consensus       114 ~~~~gi~~~d~~~~~~~~~~~~~~-~-~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-  190 (343)
                      + ..||.++++++++++.+..... . .+...+.++..|+ +|+||+++..                  ++|+++|+.+ 
T Consensus       390 t-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~lWigT~~------------------~Gl~~~~~~~~  449 (758)
T 3ott_A          390 T-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDT-AGQLWISTCL------------------GGIFVVDKHKL  449 (758)
T ss_dssp             E-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECT-TSEEEEEESS------------------SCEEEEEHHHH
T ss_pred             e-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcC-CCCEEEEECC------------------CceEEEccccc
Confidence            7 5699999999988876642111 1 1234577889999 5999997753                  4688888642 


Q ss_pred             -----CceE---Ee--ecCCC--CcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeec--C--CCCCCceee
Q 019290          191 -----KNVT---VM--YNGLS--FPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAE--M--PRFPDNIKS  254 (343)
Q Consensus       191 -----~~~~---~~--~~~~~--~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~--~--~~~p~~i~~  254 (343)
                           +.+.   .+  ..++.  ....++.+++|. +|+.....++|++++...    .+.+.+..  .  ...+..++.
T Consensus       450 ~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWi~~~t~~Gl~~~d~~~----~~~~~~~~~~~~~~~~~~~i~~  524 (758)
T 3ott_A          450 MQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGN-VWVLLYNNKGIDKINPRT----REVTKLFADELTGEKSPNYLLC  524 (758)
T ss_dssp             HHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSC-EEEEETTCSSEEEEETTT----TEEEEECTTTSCGGGCEEEEEE
T ss_pred             cccCCcceecccccccccccccceeeeEEEcCCCC-EEEEccCCCCcEEEeCCC----CceEEecCCCcCCCcccceEEE
Confidence                 1121   11  11222  245666776665 776322347899999765    23333321  1  122455788


Q ss_pred             CCCCCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECCCCCEEEEeeCCCCCccCCceeEEEeCCEEEEecCC
Q 019290          255 DSKGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEGNTLNSVSEVQEYGEYLYTGSSV  334 (343)
Q Consensus       255 d~~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~  334 (343)
                      |++|+||+++..                          ++++++++...+..+. .++.....+..+.+++|+||+++..
T Consensus       525 d~~g~lWigt~~--------------------------Gl~~~~~~~~~~~~~~-~~gl~~~~i~~i~~~~g~lWi~t~~  577 (758)
T 3ott_A          525 DEDGLLWVGFHG--------------------------GVMRINPKDESQQSIS-FGSFSNNEILSMTCVKNSIWVSTTN  577 (758)
T ss_dssp             CTTSCEEEEETT--------------------------EEEEECC--CCCCBCC-CCC---CCEEEEEEETTEEEEEESS
T ss_pred             CCCCCEEEEecC--------------------------ceEEEecCCCceEEec-ccCCCccceEEEEECCCCEEEECCC
Confidence            999999999976                          8999999766554443 2343445667777789999999954


Q ss_pred             CCeEEEEcC
Q 019290          335 QPYVVVIKA  343 (343)
Q Consensus       335 ~~~i~~~~~  343 (343)
                      .  +.+|++
T Consensus       578 G--l~~~~~  584 (758)
T 3ott_A          578 G--LWIIDR  584 (758)
T ss_dssp             C--EEEEET
T ss_pred             C--eEEEcC
Confidence            3  777764

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.63  E-value=1.3e-13  Score=124.10  Aligned_cols=248  Identities=11%  Similarity=0.118  Sum_probs=150.5

Q ss_pred             CCCCceEEEcCCCCeeEEEec---CCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeE
Q 019290           34 VVGPESLAFDCNGEGPYVGVS---DGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDL  110 (343)
Q Consensus        34 ~~~p~~l~~d~~g~~l~~~~~---~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l  110 (343)
                      ...|.+++++++|+ +|+...   ++.|+.|+..+++...+...                 ......|.+++++++++.|
T Consensus        39 ~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~-----------------~~~~~~p~~~a~spdg~~l  100 (347)
T 3hfq_A           39 TQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTV-----------------VAPGTPPAYVAVDEARQLV  100 (347)
T ss_dssp             CSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEE-----------------EEESCCCSEEEEETTTTEE
T ss_pred             cCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeee-----------------ecCCCCCEEEEECCCCCEE
Confidence            35799999999999 775544   57899999877665444210                 0123457899999955568


Q ss_pred             EEEeCCC-eEEEEeCC-CCeEEEcccccC-C------CCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCc
Q 019290          111 YIADAYF-GLMVVGPN-GGQAQQLASSAG-G------IPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSG  181 (343)
Q Consensus       111 ~v~~~~~-gi~~~d~~-~~~~~~~~~~~~-~------~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~  181 (343)
                      |+++... .+..++.+ ++..+.+..... +      .....++.+++++ ||++|+++..                 .+
T Consensus       101 ~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~sp-dg~l~v~~~~-----------------~~  162 (347)
T 3hfq_A          101 YSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTP-DNRLAVIDLG-----------------SD  162 (347)
T ss_dssp             EEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECT-TSCEEEEETT-----------------TT
T ss_pred             EEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECC-CCcEEEEeCC-----------------CC
Confidence            9887444 47777763 444443322111 0      1123577899999 5888887764                 45


Q ss_pred             eEEEEeCC-CCceEEe----ecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCc-cccccceeeecCC------CCC
Q 019290          182 RLLKYDPL-KKNVTVM----YNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGE-RTTYTPQLFAEMP------RFP  249 (343)
Q Consensus       182 ~v~~~d~~-~~~~~~~----~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~------~~p  249 (343)
                      .|+.|+.+ +++....    ......+..++++|||+.+|++....+.|.+|+++.. ..+.....+...+      ..|
T Consensus       163 ~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  242 (347)
T 3hfq_A          163 KVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGA  242 (347)
T ss_dssp             EEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEE
T ss_pred             EEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcc
Confidence            67777765 4554422    1233467889999999999999888899999988741 1101111111111      124


Q ss_pred             CceeeCCCCC-EEEEeccCCCccccccccccccccCCCcccCCCeEEEECCCCCEEEEeeCCCCCccCCceeEEE--eCC
Q 019290          250 DNIKSDSKGE-FWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEGNTLNSVSEVQE--YGE  326 (343)
Q Consensus       250 ~~i~~d~~G~-lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~~~~~~~~~~~~~--~~g  326 (343)
                      .+++++++|+ ||++... ...+                     .++.++.+|+.......+..  ...+..+..  ++.
T Consensus       243 ~~i~~spdG~~l~v~~~~-~~~v---------------------~v~~~~~~g~~~~~~~~~~~--~~~~~~~~~spdg~  298 (347)
T 3hfq_A          243 AAIRLSHDGHFLYVSNRG-YNTL---------------------AVFAVTADGHLTLIQQISTE--GDFPRDFDLDPTEA  298 (347)
T ss_dssp             EEEEECTTSCEEEEEEET-TTEE---------------------EEEEECGGGCEEEEEEEECS--SSCCCEEEECTTSS
T ss_pred             eeEEECCCCCEEEEEeCC-CCEE---------------------EEEEECCCCcEEEeEEEecC--CCCcCeEEECCCCC
Confidence            5589999997 6777654 2211                     34444444543322221111  112333333  355


Q ss_pred             EEEEecCCCCeEEEE
Q 019290          327 YLYTGSSVQPYVVVI  341 (343)
Q Consensus       327 ~l~i~~~~~~~i~~~  341 (343)
                      .||+++...+.|.+|
T Consensus       299 ~l~v~~~~~~~v~v~  313 (347)
T 3hfq_A          299 FVVVVNQNTDNATLY  313 (347)
T ss_dssp             EEEEEETTTTEEEEE
T ss_pred             EEEEEEcCCCcEEEE
Confidence            699999888888877

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.62  E-value=1.3e-13  Score=121.59  Aligned_cols=194  Identities=11%  Similarity=0.125  Sum_probs=134.9

Q ss_pred             CCceEEEcCCCCeeEEEe-cCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEe
Q 019290           36 GPESLAFDCNGEGPYVGV-SDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIAD  114 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~-~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~  114 (343)
                      .|.+++++++|+ +|++. .+++|++||+.++++..+.....               ......|+++++++ +|++|+++
T Consensus        70 ~~~~l~~~~dg~-l~v~~~~~~~i~~~d~~~g~~~~~~~~~~---------------~~~~~~~~~i~~d~-~G~l~vtd  132 (296)
T 3e5z_A           70 HQNGHCLNKQGH-LIACSHGLRRLERQREPGGEWESIADSFE---------------GKKLNSPNDVCLAP-DGSLWFSD  132 (296)
T ss_dssp             SEEEEEECTTCC-EEEEETTTTEEEEECSTTCCEEEEECEET---------------TEECCCCCCEEECT-TSCEEEEE
T ss_pred             CcceeeECCCCc-EEEEecCCCeEEEEcCCCCcEEEEeeccC---------------CCCCCCCCCEEECC-CCCEEEEC
Confidence            689999999999 56554 45899999997877766532110               01223578899998 89999975


Q ss_pred             C------------------CCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeee
Q 019290          115 A------------------YFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIAT  176 (343)
Q Consensus       115 ~------------------~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~  176 (343)
                      .                  ..+|++++++ ++++.+..     ....++++++++ ||++++++..              
T Consensus       133 ~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~-----~~~~~~gi~~s~-dg~~lv~~~~--------------  191 (296)
T 3e5z_A          133 PTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIR-----DRVKPNGLAFLP-SGNLLVSDTG--------------  191 (296)
T ss_dssp             CSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEEC-----CCSSEEEEEECT-TSCEEEEETT--------------
T ss_pred             CccccccccccccccccCCCcEEEEECCC-CCEEEeec-----CCCCCccEEECC-CCCEEEEeCC--------------
Confidence            3                  2379999988 66655432     124578999999 5876677754              


Q ss_pred             cCCCceEEEEeCC-CCce----EEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCc
Q 019290          177 GDRSGRLLKYDPL-KKNV----TVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDN  251 (343)
Q Consensus       177 ~~~~~~v~~~d~~-~~~~----~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~  251 (343)
                         .+.|++++.+ ++.+    ..+......|.+++++++|. +|++.  .++|.+|+.++    .....+....+ |.+
T Consensus       192 ---~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~--~~~v~~~~~~g----~~~~~~~~~~~-~~~  260 (296)
T 3e5z_A          192 ---DNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGL-IWASA--GDGVHVLTPDG----DELGRVLTPQT-TSN  260 (296)
T ss_dssp             ---TTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSC-EEEEE--TTEEEEECTTS----CEEEEEECSSC-CCE
T ss_pred             ---CCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCC-EEEEc--CCeEEEECCCC----CEEEEEECCCC-cee
Confidence               5678888865 4554    22212335688999999986 78876  68999999875    22233322233 778


Q ss_pred             eee-CCCC-CEEEEeccCCCccccccccccccccCCCcccCCCeEEEECCCCCEE
Q 019290          252 IKS-DSKG-EFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVV  304 (343)
Q Consensus       252 i~~-d~~G-~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~  304 (343)
                      +++ .++| .||+++..                          ++++++++.+.+
T Consensus       261 ~~f~~~d~~~L~v~t~~--------------------------~l~~~~~~~~~~  289 (296)
T 3e5z_A          261 LCFGGPEGRTLYMTVST--------------------------EFWSIETNVRGL  289 (296)
T ss_dssp             EEEESTTSCEEEEEETT--------------------------EEEEEECSCCBC
T ss_pred             EEEECCCCCEEEEEcCC--------------------------eEEEEEcccccc
Confidence            888 4666 69999876                          899998865543

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=99.61  E-value=1.2e-13  Score=137.89  Aligned_cols=233  Identities=16%  Similarity=0.201  Sum_probs=146.8

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      ...+|+.|++|+ +|+++ .++|++|++.++++..+.......             ......+..+..++ +++||+++.
T Consensus       374 ~v~~i~~d~~g~-lWigt-~~GL~~~~~~~~~~~~~~~~~~~~-------------~~~~~~v~~i~~d~-~g~lWigT~  437 (758)
T 3ott_A          374 RIRHIYEDKEQQ-LWIAT-DGSINRYDYATRQFIHYNIVDNTG-------------TYNTNWTYYIFEDT-AGQLWISTC  437 (758)
T ss_dssp             CEEEEEECTTSC-EEEEE-TTEEEEEETTTTEEEEEEEECCC---------------CBSSSEEEEEECT-TSEEEEEES
T ss_pred             ceEEEEECCCCC-EEEEe-CCcHhhcCcCCCcEEEeecCCCcC-------------CCCCceEEEEEEcC-CCCEEEEEC
Confidence            357899999999 89888 468999999988887774211000             00122356788887 899999976


Q ss_pred             CCeEEEEeCCC------CeEE---EcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEE
Q 019290          116 YFGLMVVGPNG------GQAQ---QLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKY  186 (343)
Q Consensus       116 ~~gi~~~d~~~------~~~~---~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~  186 (343)
                      ..||+++|+++      +.+.   .+ ....+.+...+..+..|+ +|+||++...                 .++|+++
T Consensus       438 ~~Gl~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~i~~i~~d~-~g~lWi~~~t-----------------~~Gl~~~  498 (758)
T 3ott_A          438 LGGIFVVDKHKLMQSTSGQYIAEQNY-SVHNGLSGMFINQIIPDN-EGNVWVLLYN-----------------NKGIDKI  498 (758)
T ss_dssp             SSCEEEEEHHHHHHCCSSEEECSEEE-CGGGTCSCSCEEEEEECT-TSCEEEEETT-----------------CSSEEEE
T ss_pred             CCceEEEccccccccCCcceeccccc-ccccccccceeeeEEEcC-CCCEEEEccC-----------------CCCcEEE
Confidence            67999999753      2221   11 111222334578899999 5999992211                 2469999


Q ss_pred             eCCCCceEEeecC-C---CCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCC----ceeeCCCC
Q 019290          187 DPLKKNVTVMYNG-L---SFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPD----NIKSDSKG  258 (343)
Q Consensus       187 d~~~~~~~~~~~~-~---~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~----~i~~d~~G  258 (343)
                      |+++++++.+... +   ..++.+..+.+|. +|++.  .++|++|+..+.    ..+.+. ..++|.    +++.| +|
T Consensus       499 d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~-lWigt--~~Gl~~~~~~~~----~~~~~~-~~gl~~~~i~~i~~~-~g  569 (758)
T 3ott_A          499 NPRTREVTKLFADELTGEKSPNYLLCDEDGL-LWVGF--HGGVMRINPKDE----SQQSIS-FGSFSNNEILSMTCV-KN  569 (758)
T ss_dssp             ETTTTEEEEECTTTSCGGGCEEEEEECTTSC-EEEEE--TTEEEEECC--C----CCCBCC-CCC---CCEEEEEEE-TT
T ss_pred             eCCCCceEEecCCCcCCCcccceEEECCCCC-EEEEe--cCceEEEecCCC----ceEEec-ccCCCccceEEEEEC-CC
Confidence            9988877765322 1   2345666666664 77764  357999987652    223332 123333    34455 89


Q ss_pred             CEEEEeccCCCccccccccccccccCCCcccCCCeEEEECCCCCEEEEeeCCCCCccCCceeEEE-eCCEEEEecCCCCe
Q 019290          259 EFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEGNTLNSVSEVQE-YGEYLYTGSSVQPY  337 (343)
Q Consensus       259 ~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~~~~~~~~~~~~~-~~g~l~i~~~~~~~  337 (343)
                      +||+++..                          ++.++|++...+..+..++. .+.  ..+.. .+|+||+|+...  
T Consensus       570 ~lWi~t~~--------------------------Gl~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~G~l~fG~~~G--  618 (758)
T 3ott_A          570 SIWVSTTN--------------------------GLWIIDRKTMDARQQNMTNK-RFT--SLLFDPKEDCVYLGGADG--  618 (758)
T ss_dssp             EEEEEESS--------------------------CEEEEETTTCCEEEC--CCC-CCS--EEEEETTTTEEEEECBSE--
T ss_pred             CEEEECCC--------------------------CeEEEcCCCceeEEecCCCC-cee--eeEEECCCCcEEEecCCc--
Confidence            99999977                          89999998776666654433 122  22333 389999999765  


Q ss_pred             EEEEcC
Q 019290          338 VVVIKA  343 (343)
Q Consensus       338 i~~~~~  343 (343)
                      +.+++|
T Consensus       619 l~~f~p  624 (758)
T 3ott_A          619 FGISHS  624 (758)
T ss_dssp             EEEEEC
T ss_pred             eEEECh
Confidence            666554

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.61  E-value=7.7e-13  Score=118.03  Aligned_cols=248  Identities=12%  Similarity=0.068  Sum_probs=154.0

Q ss_pred             ccccccCCCCCCCceEEEcCCCCeeEEEe-cCCEEEEEEcCCCCe-EEeeecCCCccccccCCCCCcccCCCcCCeee-E
Q 019290           25 SYQQLQLPGVVGPESLAFDCNGEGPYVGV-SDGRILKWKAANSGW-TEFATTAPHRAREICDGSTNTTLEPLCGRPLG-I  101 (343)
Q Consensus        25 ~~~~~~~~~~~~p~~l~~d~~g~~l~~~~-~~g~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g-i  101 (343)
                      ....+..+ ...| +++++++|+.+|+.. .++.|+.+|..+++. ....                    .....|.. +
T Consensus        32 ~~~~~~~~-~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~--------------------~~~~~~~~~~   89 (331)
T 3u4y_A           32 ILNQITLG-YDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAI--------------------QEGQSSMADV   89 (331)
T ss_dssp             EEEEEECC-CCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEE--------------------EECSSCCCCE
T ss_pred             eeeeEEcc-CCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEec--------------------ccCCCCccce
Confidence            34444544 2356 999999999777554 478999999988764 2221                    11123556 9


Q ss_pred             EEeCCCCeEEEEeCCC----eEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCe-EEEEeCCcccccccceeeeee
Q 019290          102 KFNPVTCDLYIADAYF----GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGI-VYFTDSSIYFQRRQYFMSIAT  176 (343)
Q Consensus       102 ~~~~~~~~l~v~~~~~----gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~-l~v~~~~~~~~~~~~~~~~~~  176 (343)
                      +++++++.+|++ ...    .|..+|.++++.......     ...++++++++ ||+ +|+++...             
T Consensus        90 ~~s~dg~~l~~~-~~~~~~~~i~v~d~~~~~~~~~~~~-----~~~~~~~~~sp-dg~~l~~~~~~~-------------  149 (331)
T 3u4y_A           90 DITPDDQFAVTV-TGLNHPFNMQSYSFLKNKFISTIPI-----PYDAVGIAISP-NGNGLILIDRSS-------------  149 (331)
T ss_dssp             EECTTSSEEEEC-CCSSSSCEEEEEETTTTEEEEEEEC-----CTTEEEEEECT-TSSCEEEEEETT-------------
T ss_pred             EECCCCCEEEEe-cCCCCcccEEEEECCCCCeEEEEEC-----CCCccceEECC-CCCEEEEEecCC-------------
Confidence            999955557744 444    699999998876543322     13468999999 575 88876531             


Q ss_pred             cCCC-ceEEEEeCCCCce----EEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCc
Q 019290          177 GDRS-GRLLKYDPLKKNV----TVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDN  251 (343)
Q Consensus       177 ~~~~-~~v~~~d~~~~~~----~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~  251 (343)
                        .. -.+|.++.. +.+    .........+.+++++++++.+|++....+.|.+|++.+.........+ .....|.+
T Consensus       150 --~~~i~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~  225 (331)
T 3u4y_A          150 --ANTVRRFKIDAD-GVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAV-GTNNLPGT  225 (331)
T ss_dssp             --TTEEEEEEECTT-CCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEE-ECSSCCCC
T ss_pred             --CceEEEEEECCC-CcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeec-cCCCCCce
Confidence              01 234444432 332    1222344568999999999999999988899999998752210112222 23345889


Q ss_pred             eeeCCCCC-EEEEeccCCCccccccccccccccCCCcccCCCeEEEECCC-CCE--EEEeeCC---CCCccCCce--eEE
Q 019290          252 IKSDSKGE-FWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVN-GNV--VDVLDGN---EGNTLNSVS--EVQ  322 (343)
Q Consensus       252 i~~d~~G~-lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~-g~~--~~~~~~~---~~~~~~~~~--~~~  322 (343)
                      ++++++|+ +|++...                        .+.|..+|.+ ++.  +..+...   .........  ...
T Consensus       226 ~~~spdg~~l~v~~~~------------------------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  281 (331)
T 3u4y_A          226 IVVSRDGSTVYVLTES------------------------TVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALN  281 (331)
T ss_dssp             EEECTTSSEEEEECSS------------------------EEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEEC
T ss_pred             EEECCCCCEEEEEEcC------------------------CCEEEEEECCCCceeeecccccccccCCCCcccccceEEC
Confidence            99999998 7777654                        2467788875 444  2222211   010111111  222


Q ss_pred             EeCCEEEEecCCCCeEEEEc
Q 019290          323 EYGEYLYTGSSVQPYVVVIK  342 (343)
Q Consensus       323 ~~~g~l~i~~~~~~~i~~~~  342 (343)
                      +++..||+++...+.|.+++
T Consensus       282 pdg~~l~v~~~~~~~v~v~d  301 (331)
T 3u4y_A          282 KTETKLFISANISRELKVFT  301 (331)
T ss_dssp             TTSSEEEEEETTTTEEEEEE
T ss_pred             CCCCEEEEecCCCCcEEEEE
Confidence            34667999999998888876

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.60  E-value=6.5e-12  Score=112.72  Aligned_cols=233  Identities=13%  Similarity=0.120  Sum_probs=152.7

Q ss_pred             CCceEEEcCCCCeeEEE-ecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEe
Q 019290           36 GPESLAFDCNGEGPYVG-VSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIAD  114 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~-~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~  114 (343)
                      .|.+++++++|+.+|+. ..++.|..+|..+++...........          .........|.+++++++++.+|+++
T Consensus        90 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~s~dg~~l~~~~  159 (353)
T 3vgz_A           90 KPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRK----------RTEEVRPLQPRELVADDATNTVYISG  159 (353)
T ss_dssp             CCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCC----------CCSSCCCCEEEEEEEETTTTEEEEEE
T ss_pred             CcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCc----------cccccCCCCCceEEECCCCCEEEEEe
Confidence            58999999999966654 55789999999887653322111000          00001122478899999666799986


Q ss_pred             C--CCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCc
Q 019290          115 A--YFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKN  192 (343)
Q Consensus       115 ~--~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~  192 (343)
                      .  ...|+.+|.++++........    ...++++++++++..+|+++.                  .+.|+.+|..+++
T Consensus       160 ~~~~~~i~~~d~~~~~~~~~~~~~----~~~~~~~~~s~dg~~l~~~~~------------------~~~i~~~d~~~~~  217 (353)
T 3vgz_A          160 IGKESVIWVVDGGNIKLKTAIQNT----GKMSTGLALDSEGKRLYTTNA------------------DGELITIDTADNK  217 (353)
T ss_dssp             ESSSCEEEEEETTTTEEEEEECCC----CTTCCCCEEETTTTEEEEECT------------------TSEEEEEETTTTE
T ss_pred             cCCCceEEEEcCCCCceEEEecCC----CCccceEEECCCCCEEEEEcC------------------CCeEEEEECCCCe
Confidence            3  234999999988765543211    134788999994234777543                  4578899998777


Q ss_pred             eEEeecC-----CCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCC-EEEEecc
Q 019290          193 VTVMYNG-----LSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGE-FWIAMNS  266 (343)
Q Consensus       193 ~~~~~~~-----~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-lwi~~~~  266 (343)
                      .......     ...+.+++++++++.+|+++...+.|++|++.+...   ...+ ... .+.+++++++|+ +|++...
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~---~~~~-~~~-~~~~~~~s~dg~~l~v~~~~  292 (353)
T 3vgz_A          218 ILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNI---LAKV-AAP-ESLAVLFNPARNEAYVTHRQ  292 (353)
T ss_dssp             EEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCE---EEEE-ECS-SCCCEEEETTTTEEEEEETT
T ss_pred             EEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcE---EEEE-EcC-CCceEEECCCCCEEEEEECC
Confidence            6533221     223567999999999999988889999999865221   1111 222 367889999997 8888765


Q ss_pred             CCCccccccccccccccCCCcccCCCeEEEECCC-CCEEEEeeCCCCCccCCceeEEEe--CCEEEEecCC
Q 019290          267 ARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVN-GNVVDVLDGNEGNTLNSVSEVQEY--GEYLYTGSSV  334 (343)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~~--~g~l~i~~~~  334 (343)
                                              .+.|..+|.+ ++.+..+..+.     .+..+..+  ++.||+++..
T Consensus       293 ------------------------~~~v~~~d~~~~~~~~~~~~~~-----~~~~~~~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          293 ------------------------AGKVSVIDAKSYKVVKTFDTPT-----HPNSLALSADGKTLYVSVKQ  334 (353)
T ss_dssp             ------------------------TTEEEEEETTTTEEEEEEECCS-----EEEEEEECTTSCEEEEEEEC
T ss_pred             ------------------------CCeEEEEECCCCeEEEEEecCC-----CCCeEEEcCCCCEEEEEEcc
Confidence                                    3478889974 66666665432     23444333  4569988765

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.60  E-value=6.9e-14  Score=125.18  Aligned_cols=185  Identities=14%  Similarity=0.161  Sum_probs=126.4

Q ss_pred             CCceEEEcC-CCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEe
Q 019290           36 GPESLAFDC-NGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIAD  114 (343)
Q Consensus        36 ~p~~l~~d~-~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~  114 (343)
                      .|.+|++++ +|+ +|++...++|+++|+.++.+..+.....               ......|+++++++.+++|||++
T Consensus        81 ~p~gi~~~~~~g~-l~v~d~~~~i~~~d~~~g~~~~~~~~~~---------------~~~~~~p~~i~~d~~~G~l~v~d  144 (322)
T 2fp8_A           81 RTYDISYNLQNNQ-LYIVDCYYHLSVVGSEGGHATQLATSVD---------------GVPFKWLYAVTVDQRTGIVYFTD  144 (322)
T ss_dssp             CEEEEEEETTTTE-EEEEETTTEEEEECTTCEECEEEESEET---------------TEECSCEEEEEECTTTCCEEEEE
T ss_pred             CCceEEEcCCCCc-EEEEECCCCEEEEeCCCCEEEEecccCC---------------CCcccccceEEEecCCCEEEEEC
Confidence            689999997 677 7877666779999988765555532100               01234588999996467999998


Q ss_pred             CC------------------CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCe-EEEEeCCcccccccceeeee
Q 019290          115 AY------------------FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGI-VYFTDSSIYFQRRQYFMSIA  175 (343)
Q Consensus       115 ~~------------------~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~-l~v~~~~~~~~~~~~~~~~~  175 (343)
                      ..                  .+|+++|+++++++.+...     ...++++++++ +|+ +|+++..             
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~-----~~~p~gia~~~-dg~~lyv~d~~-------------  205 (322)
T 2fp8_A          145 VSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKE-----LHVPGGAEVSA-DSSFVLVAEFL-------------  205 (322)
T ss_dssp             SCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEE-----ESCCCEEEECT-TSSEEEEEEGG-------------
T ss_pred             CcccccccccceehcccCCCceEEEEeCCCCEEEEeccC-----CccCcceEECC-CCCEEEEEeCC-------------
Confidence            54                  3499999988877655321     35689999999 564 9998865             


Q ss_pred             ecCCCceEEEEeCCC---CceEEeecCCCCcceeEEecCCCEEEEEEcC----------CCeEEEEEccCccccccceee
Q 019290          176 TGDRSGRLLKYDPLK---KNVTVMYNGLSFPNGVALSNNNSFLLLAESA----------TLKILRFWLQGERTTYTPQLF  242 (343)
Q Consensus       176 ~~~~~~~v~~~d~~~---~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~----------~~~i~~~~~~~~~~~~~~~~~  242 (343)
                          .++|++|+.++   +..+.+.. ...|.+++++++|. +|++...          .++|++++.++.    ....+
T Consensus       206 ----~~~I~~~~~~~~~~~~~~~~~~-~~gP~gi~~d~~G~-l~va~~~~~~~~~~~~~~~~v~~~d~~G~----~~~~~  275 (322)
T 2fp8_A          206 ----SHQIVKYWLEGPKKGTAEVLVK-IPNPGNIKRNADGH-FWVSSSEELDGNMHGRVDPKGIKFDEFGN----ILEVI  275 (322)
T ss_dssp             ----GTEEEEEESSSTTTTCEEEEEE-CSSEEEEEECTTSC-EEEEEEEETTSSTTSCEEEEEEEECTTSC----EEEEE
T ss_pred             ----CCeEEEEECCCCcCCccceEEe-CCCCCCeEECCCCC-EEEEecCcccccccCCCccEEEEECCCCC----EEEEE
Confidence                46799998764   23333332 22399999999886 8888754          467999987652    22233


Q ss_pred             ecCC----CCCCceeeCCCCCEEEEecc
Q 019290          243 AEMP----RFPDNIKSDSKGEFWIAMNS  266 (343)
Q Consensus       243 ~~~~----~~p~~i~~d~~G~lwi~~~~  266 (343)
                      ....    ..+.+++. .+|+|||++..
T Consensus       276 ~~~~g~~~~~~~~~~~-~~g~L~v~~~~  302 (322)
T 2fp8_A          276 PLPPPFAGEHFEQIQE-HDGLLYIGTLF  302 (322)
T ss_dssp             ECCTTTTTSCCCEEEE-ETTEEEEECSS
T ss_pred             ECCCCCccccceEEEE-eCCEEEEeecC
Confidence            2211    23555555 47899999866

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=99.58  E-value=3.3e-13  Score=118.95  Aligned_cols=206  Identities=11%  Similarity=0.081  Sum_probs=131.5

Q ss_pred             ccccCC-CCCCCceEEEcCCCCeeEEEe-cCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEE-
Q 019290           27 QQLQLP-GVVGPESLAFDCNGEGPYVGV-SDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKF-  103 (343)
Q Consensus        27 ~~~~~~-~~~~p~~l~~d~~g~~l~~~~-~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~-  103 (343)
                      ..|.++ ....||++.+|++...+|++. .+++|.++++.++...++.. +...    ..|       .....+.||.+ 
T Consensus         4 ~~i~~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~-~~~s----~~g-------~~~~~~sGl~~~   71 (334)
T 2p9w_A            4 DQIDVKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVI-DGAS----SNG-------DGEQQMSGLSLL   71 (334)
T ss_dssp             SEEEECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECC-TTTC----CSS-------CCSEEEEEEEES
T ss_pred             ceEEecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEec-CCcc----ccC-------CCcceeeEEEEe
Confidence            345555 223799999998655577554 78999999998766555421 1000    000       11124679999 


Q ss_pred             --eCCCCeEEEE-eC-------------CCeEEEEeCC---CCeEEEccccc---C------CCCccCcceeEEeCCCCe
Q 019290          104 --NPVTCDLYIA-DA-------------YFGLMVVGPN---GGQAQQLASSA---G------GIPFRFTNDLDIDPNTGI  155 (343)
Q Consensus       104 --~~~~~~l~v~-~~-------------~~gi~~~d~~---~~~~~~~~~~~---~------~~~~~~~~~i~~d~~dg~  155 (343)
                        ++ +++||++ +.             ...|.++|+.   +++........   .      +.....++++++|+ +|+
T Consensus        72 ~~D~-~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~-~Gn  149 (334)
T 2p9w_A           72 THDN-SKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDR-DGN  149 (334)
T ss_dssp             SSSS-CCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECT-TSC
T ss_pred             ccCC-CCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECC-CCC
Confidence              67 6999984 31             2459999998   66654433221   0      11224589999999 599


Q ss_pred             EEEEeCCcccccccceeeeeecCCC-ceEEEEeCCCCceEEee------cCCCCcceeEEecCCCEEEEEEcCCCeEEEE
Q 019290          156 VYFTDSSIYFQRRQYFMSIATGDRS-GRLLKYDPLKKNVTVMY------NGLSFPNGVALSNNNSFLLLAESATLKILRF  228 (343)
Q Consensus       156 l~v~~~~~~~~~~~~~~~~~~~~~~-~~v~~~d~~~~~~~~~~------~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~  228 (343)
                      .|+++..                 . +.|+++++++.....+.      .....++||+++|++..|++.++ .++|++|
T Consensus       150 aYVt~s~-----------------~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-~g~L~~f  211 (334)
T 2p9w_A          150 SYVAFAL-----------------GMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-PRALTAF  211 (334)
T ss_dssp             EEEEEEE-----------------SSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS-SSSEEEE
T ss_pred             EEEeCCC-----------------CCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC-CCeEEEE
Confidence            9998764                 4 67999999865444332      11234789999999999999988 9999999


Q ss_pred             EccCccccccceee--e---cCCCCCCce-eeCCCCCE-EEEecc
Q 019290          229 WLQGERTTYTPQLF--A---EMPRFPDNI-KSDSKGEF-WIAMNS  266 (343)
Q Consensus       229 ~~~~~~~~~~~~~~--~---~~~~~p~~i-~~d~~G~l-wi~~~~  266 (343)
                      ++..... .++..-  -   ... .+++| ....+|++ +++...
T Consensus       212 D~~~pv~-~~v~~~~~G~~~~~~-~~dgilp~~~~G~vllV~~~~  254 (334)
T 2p9w_A          212 DVSKPYA-WPEPVKINGDFGTLS-GTEKIVTVPVGNESVLVGARA  254 (334)
T ss_dssp             ECSSSSC-CCEECEESSCCCCCT-TEEEEEEEEETTEEEEEEEET
T ss_pred             cCCCCcc-eeecccccCCccccc-CcccccccccCCEEEEEEcCC
Confidence            9874211 011110  0   122 36775 55678887 666543

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.58  E-value=1.5e-12  Score=116.03  Aligned_cols=210  Identities=12%  Similarity=0.126  Sum_probs=136.2

Q ss_pred             EEEcCCCCeeEEEecCCEEEEEEcCCCCeE-EeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCCCe
Q 019290           40 LAFDCNGEGPYVGVSDGRILKWKAANSGWT-EFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFG  118 (343)
Q Consensus        40 l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~~g  118 (343)
                      .++. +|. +|+++.+++|+.+|+. ++.. .+..                    .......+.+++ ++.||+++...+
T Consensus       103 ~~~~-~~~-l~v~t~~~~l~~~d~~-g~~~~~~~~--------------------~~~~~~~~~~~~-~g~l~vgt~~~~  158 (330)
T 3hxj_A          103 FTIF-EDI-LYVTSMDGHLYAINTD-GTEKWRFKT--------------------KKAIYATPIVSE-DGTIYVGSNDNY  158 (330)
T ss_dssp             EEEE-TTE-EEEECTTSEEEEECTT-SCEEEEEEC--------------------SSCCCSCCEECT-TSCEEEECTTSE
T ss_pred             ceEE-CCE-EEEEecCCEEEEEcCC-CCEEEEEcC--------------------CCceeeeeEEcC-CCEEEEEcCCCE
Confidence            3344 555 8988888999999988 4322 2210                    011123456776 789999965578


Q ss_pred             EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceE-Eee
Q 019290          119 LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVT-VMY  197 (343)
Q Consensus       119 i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~  197 (343)
                      |+.+|++ ++........    ...+..+++|+ +|.+|++.                    ++|+++|. +++.. ...
T Consensus       159 l~~~d~~-g~~~~~~~~~----~~~~~~~~~d~-~g~l~v~t--------------------~~l~~~d~-~g~~~~~~~  211 (330)
T 3hxj_A          159 LYAINPD-GTEKWRFKTN----DAITSAASIGK-DGTIYFGS--------------------DKVYAINP-DGTEKWNFY  211 (330)
T ss_dssp             EEEECTT-SCEEEEEECS----SCCCSCCEECT-TCCEEEES--------------------SSEEEECT-TSCEEEEEC
T ss_pred             EEEECCC-CCEeEEEecC----CCceeeeEEcC-CCEEEEEe--------------------CEEEEECC-CCcEEEEEc
Confidence            9999998 6554322211    13467788988 59999955                    36899994 44432 333


Q ss_pred             cCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEeccCCCcccccccc
Q 019290          198 NGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNSARGKIESNKKT  277 (343)
Q Consensus       198 ~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~~~~~~~~~~~~~  277 (343)
                      ........+++++++ .+|++. .++.|++++.++.    ....+......+..+++|++|+||+++..           
T Consensus       212 ~~~~~~~~~~~~~~g-~l~v~t-~~~gl~~~~~~g~----~~~~~~~~~~~~~~~~~~~~g~l~v~t~~-----------  274 (330)
T 3hxj_A          212 AGYWTVTRPAISEDG-TIYVTS-LDGHLYAINPDGT----EKWRFKTGKRIESSPVIGNTDTIYFGSYD-----------  274 (330)
T ss_dssp             CSSCCCSCCEECTTS-CEEEEE-TTTEEEEECTTSC----EEEEEECSSCCCSCCEECTTSCEEEECTT-----------
T ss_pred             cCCcceeceEECCCC-eEEEEc-CCCeEEEECCCCC----EeEEeeCCCCccccceEcCCCeEEEecCC-----------
Confidence            233446677887776 477765 4678999975442    22222222334556788999999999875           


Q ss_pred             ccccccCCCcccCCCeEEEECCCCCEEEEeeCCCCCccCCceeEEE-eCCEEEEecCCC
Q 019290          278 AFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEGNTLNSVSEVQE-YGEYLYTGSSVQ  335 (343)
Q Consensus       278 ~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~~~~~~~~~~~~~-~~g~l~i~~~~~  335 (343)
                                    ++|+++|++|+.+..+..+..    .+..+.. .+|+||+++...
T Consensus       275 --------------ggl~~~d~~g~~~~~~~~~~~----~~~~~~~d~~g~l~~gt~~G  315 (330)
T 3hxj_A          275 --------------GHLYAINPDGTEKWNFETGSW----IIATPVIDENGTIYFGTRNG  315 (330)
T ss_dssp             --------------CEEEEECTTSCEEEEEECSSC----CCSCCEECTTCCEEEECTTS
T ss_pred             --------------CCEEEECCCCcEEEEEEcCCc----cccceEEcCCCEEEEEcCCC
Confidence                          489999999888777665322    3344444 589999998765

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.58  E-value=4e-13  Score=119.02  Aligned_cols=186  Identities=15%  Similarity=0.194  Sum_probs=126.4

Q ss_pred             CCCceEEEcCC-CCeeEEEecCCEEEEEEcCCCCeEEe-eecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEE
Q 019290           35 VGPESLAFDCN-GEGPYVGVSDGRILKWKAANSGWTEF-ATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYI  112 (343)
Q Consensus        35 ~~p~~l~~d~~-g~~l~~~~~~g~i~~~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v  112 (343)
                      ..|.+++++++ |+ +|++...++|+++|++ +++..+ .....               ......|.++++++ ++++|+
T Consensus        71 ~~~~~i~~~~~~g~-l~v~~~~~~l~~~d~~-g~~~~~~~~~~~---------------~~~~~~~~~i~~d~-~g~l~v  132 (314)
T 1pjx_A           71 GIPAGCQCDRDANQ-LFVADMRLGLLVVQTD-GTFEEIAKKDSE---------------GRRMQGCNDCAFDY-EGNLWI  132 (314)
T ss_dssp             CCEEEEEECSSSSE-EEEEETTTEEEEEETT-SCEEECCSBCTT---------------SCBCBCCCEEEECT-TSCEEE
T ss_pred             CCCceEEEecCCCc-EEEEECCCCEEEEeCC-CCEEEEEeccCC---------------CccccCCcCEEECC-CCCEEE
Confidence            36899999999 77 7776666689999988 666544 21100               01123578999998 889999


Q ss_pred             EeCC----------------CeEEEEeCCCCeEEEcccccCCCCccCcceeEEe----CCCC-eEEEEeCCcccccccce
Q 019290          113 ADAY----------------FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDID----PNTG-IVYFTDSSIYFQRRQYF  171 (343)
Q Consensus       113 ~~~~----------------~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d----~~dg-~l~v~~~~~~~~~~~~~  171 (343)
                      ++..                .+|++++++ ++++.+...     ...+++++++    + +| .+|+++..         
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~-----~~~~~~i~~~~~~d~-dg~~l~v~~~~---------  196 (314)
T 1pjx_A          133 TAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTA-----FQFPNGIAVRHMNDG-RPYQLIVAETP---------  196 (314)
T ss_dssp             EECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEE-----ESSEEEEEEEECTTS-CEEEEEEEETT---------
T ss_pred             EecCcccccccccccccCCCCeEEEECCC-CCEEEeccC-----CCCcceEEEecccCC-CCCEEEEEECC---------
Confidence            9764                369999987 666554221     2346889999    8 57 68998754         


Q ss_pred             eeeeecCCCceEEEEeCC-CCceE---Eee--c-CC-CCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeee
Q 019290          172 MSIATGDRSGRLLKYDPL-KKNVT---VMY--N-GL-SFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFA  243 (343)
Q Consensus       172 ~~~~~~~~~~~v~~~d~~-~~~~~---~~~--~-~~-~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~  243 (343)
                              .++|++++.+ +++..   .+.  . .. ..+.+++++++|. +|++....++|.+|+.++..   ....+.
T Consensus       197 --------~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~~~~~~i~~~d~~~g~---~~~~~~  264 (314)
T 1pjx_A          197 --------TKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN-LLVANWGSSHIEVFGPDGGQ---PKMRIR  264 (314)
T ss_dssp             --------TTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC-EEEEEETTTEEEEECTTCBS---CSEEEE
T ss_pred             --------CCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCC-EEEEEcCCCEEEEEcCCCCc---EeEEEe
Confidence                    4678888864 34321   111  1 11 4588999999885 88887778899999976311   112222


Q ss_pred             cCCCCCCceeeCCCCC-EEEEecc
Q 019290          244 EMPRFPDNIKSDSKGE-FWIAMNS  266 (343)
Q Consensus       244 ~~~~~p~~i~~d~~G~-lwi~~~~  266 (343)
                      .....|.+++++++|+ ||+++..
T Consensus       265 ~~~~~~~~i~~~~dg~~l~v~~~~  288 (314)
T 1pjx_A          265 CPFEKPSNLHFKPQTKTIFVTEHE  288 (314)
T ss_dssp             CSSSCEEEEEECTTSSEEEEEETT
T ss_pred             CCCCCceeEEECCCCCEEEEEeCC
Confidence            1224577889999998 9999876

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.56  E-value=1.1e-13  Score=123.82  Aligned_cols=197  Identities=10%  Similarity=0.121  Sum_probs=132.2

Q ss_pred             CeeeEEEeCCCCeEEEEeCC-CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeee
Q 019290           97 RPLGIKFNPVTCDLYIADAY-FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIA  175 (343)
Q Consensus        97 ~p~gi~~~~~~~~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~  175 (343)
                      .+.++++++ +++||+++.. .+|+++|+++++++.+....    ...+.++++++ +|++|+++...            
T Consensus        46 ~~~~~~~~~-~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~----~~~~~~i~~~~-dg~l~v~~~~~------------  107 (333)
T 2dg1_A           46 QLEGLNFDR-QGQLFLLDVFEGNIFKINPETKEIKRPFVSH----KANPAAIKIHK-DGRLFVCYLGD------------  107 (333)
T ss_dssp             CEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECS----SSSEEEEEECT-TSCEEEEECTT------------
T ss_pred             cccCcEECC-CCCEEEEECCCCEEEEEeCCCCcEEEEeeCC----CCCcceEEECC-CCcEEEEeCCC------------
Confidence            467899998 7889987654 45999999988877653211    24588999999 59999987541            


Q ss_pred             ecCCCceEEEEeCCCCceEEeec---CCCCcceeEEecCCCEEEEEEcC------CCeEEEEEccCccccccceeeecCC
Q 019290          176 TGDRSGRLLKYDPLKKNVTVMYN---GLSFPNGVALSNNNSFLLLAESA------TLKILRFWLQGERTTYTPQLFAEMP  246 (343)
Q Consensus       176 ~~~~~~~v~~~d~~~~~~~~~~~---~~~~~~~i~~~~d~~~lyv~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~  246 (343)
                       ....++|+++|++++....+..   ....+++++++++++ +|++...      .+.|++++.++    .+...+....
T Consensus       108 -~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~  181 (333)
T 2dg1_A          108 -FKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDF----RTVTPIIQNI  181 (333)
T ss_dssp             -SSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTS----CCEEEEEEEE
T ss_pred             -CCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCC-EEEEeccccccCCCceEEEEeCCC----CEEEEeecCC
Confidence             0012579999998877653332   234578999999885 7777653      46899998765    2222332222


Q ss_pred             CCCCceeeCCCCC-EEEEeccCCCccccccccccccccCCCcccCCCeEEEECC--CCCEEEEe-----eCCCCCccCCc
Q 019290          247 RFPDNIKSDSKGE-FWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDV--NGNVVDVL-----DGNEGNTLNSV  318 (343)
Q Consensus       247 ~~p~~i~~d~~G~-lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~--~g~~~~~~-----~~~~~~~~~~~  318 (343)
                      ..|.+++++++|+ +|+++..                        .+.|++++.  +++.+..+     ....+  ...+
T Consensus       182 ~~~~~i~~~~dg~~l~v~~~~------------------------~~~i~~~d~~~~g~~~~~~~~~~~~~~~~--~~~~  235 (333)
T 2dg1_A          182 SVANGIALSTDEKVLWVTETT------------------------ANRLHRIALEDDGVTIQPFGATIPYYFTG--HEGP  235 (333)
T ss_dssp             SSEEEEEECTTSSEEEEEEGG------------------------GTEEEEEEECTTSSSEEEEEEEEEEECCS--SSEE
T ss_pred             CcccceEECCCCCEEEEEeCC------------------------CCeEEEEEecCCCcCcccccceEEEecCC--CCCC
Confidence            2477899999996 8998765                        247778876  45433221     11111  1234


Q ss_pred             eeEEEe-CCEEEEecCCCCeEEEEcC
Q 019290          319 SEVQEY-GEYLYTGSSVQPYVVVIKA  343 (343)
Q Consensus       319 ~~~~~~-~g~l~i~~~~~~~i~~~~~  343 (343)
                      ..+..+ +|+||+++...+.|.++++
T Consensus       236 ~~i~~d~~G~l~v~~~~~~~v~~~d~  261 (333)
T 2dg1_A          236 DSCCIDSDDNLYVAMYGQGRVLVFNK  261 (333)
T ss_dssp             EEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred             CceEECCCCCEEEEEcCCCEEEEECC
Confidence            455555 7899999988888998874

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.56  E-value=1.4e-11  Score=112.39  Aligned_cols=241  Identities=13%  Similarity=0.179  Sum_probs=163.4

Q ss_pred             cccccCCCCCCCceEEEcCCCCeeE-EEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEe
Q 019290           26 YQQLQLPGVVGPESLAFDCNGEGPY-VGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFN  104 (343)
Q Consensus        26 ~~~~~~~~~~~p~~l~~d~~g~~l~-~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~  104 (343)
                      .+.+....  .|.+++++++|+.+| ++..++.|..||..+++......                    ....+.+++++
T Consensus        25 ~~~~~~~~--~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~--------------------~~~~v~~~~~s   82 (391)
T 1l0q_A           25 TATIPVGS--NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVP--------------------AGSSPQGVAVS   82 (391)
T ss_dssp             EEEEECSS--SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEE--------------------CSSSEEEEEEC
T ss_pred             EEEeecCC--CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEE--------------------CCCCccceEEC
Confidence            34444333  589999999999765 45578999999998765443221                    11257899999


Q ss_pred             CCCCeEEEEeCC-CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCe-EEEEeCCcccccccceeeeeecCCCce
Q 019290          105 PVTCDLYIADAY-FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGI-VYFTDSSIYFQRRQYFMSIATGDRSGR  182 (343)
Q Consensus       105 ~~~~~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~-l~v~~~~~~~~~~~~~~~~~~~~~~~~  182 (343)
                      ++++.||++... ..|+.+|.++++........     ..+.++++++ +|+ +|++...                 .+.
T Consensus        83 pdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-----~~~~~~~~s~-dg~~l~~~~~~-----------------~~~  139 (391)
T 1l0q_A           83 PDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-----KSPLGLALSP-DGKKLYVTNNG-----------------DKT  139 (391)
T ss_dssp             TTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-----SSEEEEEECT-TSSEEEEEETT-----------------TTE
T ss_pred             CCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-----CCcceEEECC-CCCEEEEEeCC-----------------CCE
Confidence            955668888655 45999999988765443221     3468899999 465 7676643                 567


Q ss_pred             EEEEeCCCCceEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCC-EE
Q 019290          183 LLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGE-FW  261 (343)
Q Consensus       183 v~~~d~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-lw  261 (343)
                      |+.+|..+++..........+..++++++++.+|++...++.|+.|++....    ..........+.+++++++|+ +|
T Consensus       140 v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~----~~~~~~~~~~~~~~~~~~~g~~l~  215 (391)
T 1l0q_A          140 VSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNS----VIDTVKVEAAPSGIAVNPEGTKAY  215 (391)
T ss_dssp             EEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE----EEEEEECSSEEEEEEECTTSSEEE
T ss_pred             EEEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCe----EEEEEecCCCccceEECCCCCEEE
Confidence            9999988777665554456678999999999999988888999999986522    111122233466788999985 66


Q ss_pred             EEeccCCCccccccccccccccCCCcccCCCeEEEECCC-CCEEEEeeCCCCCccCCceeEEEe--CCEEEEecCCCCeE
Q 019290          262 IAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVN-GNVVDVLDGNEGNTLNSVSEVQEY--GEYLYTGSSVQPYV  338 (343)
Q Consensus       262 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~~--~g~l~i~~~~~~~i  338 (343)
                      ++... ..                     .+.|..+|.+ ++.+..+....     .+..+...  +..||++....+.|
T Consensus       216 ~~~~~-~~---------------------~~~v~~~d~~~~~~~~~~~~~~-----~~~~~~~s~dg~~l~~s~~~d~~v  268 (391)
T 1l0q_A          216 VTNVD-KY---------------------FNTVSMIDTGTNKITARIPVGP-----DPAGIAVTPDGKKVYVALSFXNTV  268 (391)
T ss_dssp             EEEEC-SS---------------------CCEEEEEETTTTEEEEEEECCS-----SEEEEEECTTSSEEEEEETTTTEE
T ss_pred             EEecC-cC---------------------CCcEEEEECCCCeEEEEEecCC-----CccEEEEccCCCEEEEEcCCCCEE
Confidence            66541 01                     2478888874 55555554322     23333333  55788888877888


Q ss_pred             EEEc
Q 019290          339 VVIK  342 (343)
Q Consensus       339 ~~~~  342 (343)
                      .+++
T Consensus       269 ~v~d  272 (391)
T 1l0q_A          269 SVID  272 (391)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8776

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.55  E-value=5e-12  Score=112.73  Aligned_cols=235  Identities=14%  Similarity=0.095  Sum_probs=149.8

Q ss_pred             EEEcCCCCeeE-EEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCC-C
Q 019290           40 LAFDCNGEGPY-VGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAY-F  117 (343)
Q Consensus        40 l~~d~~g~~l~-~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~-~  117 (343)
                      .+++.+++.+| +...++.|..+|..+++......                   .....+ +++++++++.+|++... .
T Consensus         3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~-------------------~~~~~~-~~~~s~dg~~l~~~~~~~~   62 (331)
T 3u4y_A            3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQIT-------------------LGYDFV-DTAITSDCSNVVVTSDFCQ   62 (331)
T ss_dssp             ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEE-------------------CCCCEE-EEEECSSSCEEEEEESTTC
T ss_pred             eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEE-------------------ccCCcc-eEEEcCCCCEEEEEeCCCC
Confidence            45666666556 55678899999998876644321                   112235 89999955569998764 4


Q ss_pred             eEEEEeCCCCeE-EEcccccCCCCccCcce-eEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEE
Q 019290          118 GLMVVGPNGGQA-QQLASSAGGIPFRFTND-LDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTV  195 (343)
Q Consensus       118 gi~~~d~~~~~~-~~~~~~~~~~~~~~~~~-i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~  195 (343)
                      .|+.+|+++++. .......     ..+.. +++++ +|+.+++...              ....+.|+.+|.++++...
T Consensus        63 ~i~~~d~~~~~~~~~~~~~~-----~~~~~~~~~s~-dg~~l~~~~~--------------~~~~~~i~v~d~~~~~~~~  122 (331)
T 3u4y_A           63 TLVQIETQLEPPKVVAIQEG-----QSSMADVDITP-DDQFAVTVTG--------------LNHPFNMQSYSFLKNKFIS  122 (331)
T ss_dssp             EEEEEECSSSSCEEEEEEEC-----SSCCCCEEECT-TSSEEEECCC--------------SSSSCEEEEEETTTTEEEE
T ss_pred             eEEEEECCCCceeEEecccC-----CCCccceEECC-CCCEEEEecC--------------CCCcccEEEEECCCCCeEE
Confidence            599999998875 3222211     23556 99999 5764443332              0011279999998887665


Q ss_pred             eecCCCCcceeEEecCCCEEEEEEcCCCe-EEEEEccCccccccc-eeeecCCCCCCceeeCCCCC-EEEEeccCCCccc
Q 019290          196 MYNGLSFPNGVALSNNNSFLLLAESATLK-ILRFWLQGERTTYTP-QLFAEMPRFPDNIKSDSKGE-FWIAMNSARGKIE  272 (343)
Q Consensus       196 ~~~~~~~~~~i~~~~d~~~lyv~~~~~~~-i~~~~~~~~~~~~~~-~~~~~~~~~p~~i~~d~~G~-lwi~~~~~~~~~~  272 (343)
                      .......+.+++++|+++.+|+++...+. |.+|+++.+..+... .........|.+++++++|+ +|++...      
T Consensus       123 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~------  196 (331)
T 3u4y_A          123 TIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLI------  196 (331)
T ss_dssp             EEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETT------
T ss_pred             EEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCC------
Confidence            55555678999999999999999887777 999988753321111 11112233478899999997 8888765      


Q ss_pred             cccccccccccCCCcccCCCeEEEECC-CCCE---EEEeeCCCCCccCCceeEEE--eCCEEEEecCCCCeEEEEcC
Q 019290          273 SNKKTAFCEETAKPWFLRDPVGVKFDV-NGNV---VDVLDGNEGNTLNSVSEVQE--YGEYLYTGSSVQPYVVVIKA  343 (343)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~---~~~~~~~~~~~~~~~~~~~~--~~g~l~i~~~~~~~i~~~~~  343 (343)
                                        .+.|..+|. +++.   +..+...     ..+..+..  ++..||+++...+.|.+++.
T Consensus       197 ------------------~~~v~v~d~~~~~~~~~~~~~~~~-----~~~~~~~~spdg~~l~v~~~~~~~i~~~d~  250 (331)
T 3u4y_A          197 ------------------GNSIGILETQNPENITLLNAVGTN-----NLPGTIVVSRDGSTVYVLTESTVDVFNFNQ  250 (331)
T ss_dssp             ------------------TTEEEEEECSSTTSCEEEEEEECS-----SCCCCEEECTTSSEEEEECSSEEEEEEEET
T ss_pred             ------------------CCeEEEEECCCCcccceeeeccCC-----CCCceEEECCCCCEEEEEEcCCCEEEEEEC
Confidence                              346777886 4565   5555432     12233333  34558998888888888763

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=99.55  E-value=5.2e-13  Score=124.35  Aligned_cols=203  Identities=9%  Similarity=0.034  Sum_probs=139.0

Q ss_pred             CcCCeeeEEEeC-CCCeEEEEeCCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCe-EEEEeCCcccccccce
Q 019290           94 LCGRPLGIKFNP-VTCDLYIADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGI-VYFTDSSIYFQRRQYF  171 (343)
Q Consensus        94 ~~~~p~gi~~~~-~~~~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~-l~v~~~~~~~~~~~~~  171 (343)
                      .+..|.++++++ .+++||+++....|+++|+++++++.+..     ....|.++++|+ +|+ ||+++.+..       
T Consensus       135 ~~~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-----~~~~P~~ia~d~-~G~~lyvad~~~~-------  201 (430)
T 3tc9_A          135 GFGGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-----GLSKVRTICWTH-EADSMIITNDQNN-------  201 (430)
T ss_dssp             CCSCCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-----CCSCEEEEEECT-TSSEEEEEECCSC-------
T ss_pred             CCCCCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-----CCCCcceEEEeC-CCCEEEEEeCCCC-------
Confidence            356799999996 37899999876669999999888776643     235689999999 476 999987420       


Q ss_pred             eeeeecCCCceEEEEeCCCCce-EEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecC--CCC
Q 019290          172 MSIATGDRSGRLLKYDPLKKNV-TVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEM--PRF  248 (343)
Q Consensus       172 ~~~~~~~~~~~v~~~d~~~~~~-~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~~~  248 (343)
                            .....++.++.++... ......+..|.+++++++++.||+++...++|++++.++.    ....+...  ...
T Consensus       202 ------~~~~~v~~~~~~g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~----~~~~~~~~~~~~~  271 (430)
T 3tc9_A          202 ------NDRPNNYILTRESGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQ----ETTPLFTIQDSGW  271 (430)
T ss_dssp             ------TTSEEEEEEEGGGTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTT----EEEEEEECSSSSC
T ss_pred             ------cccceEEEEeCCCceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCC----cEEEEEEcCCCCc
Confidence                  1122466676553221 1222346789999999966679999999999999998752    22122222  235


Q ss_pred             CCceeeCCCCC-EEEEeccCCCccccccccccccccCCCcccCCCeEEEECCCCC--EE----EEeeCC--CC-------
Q 019290          249 PDNIKSDSKGE-FWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGN--VV----DVLDGN--EG-------  312 (343)
Q Consensus       249 p~~i~~d~~G~-lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~--~~----~~~~~~--~~-------  312 (343)
                      |.++++|++|+ ||+++..                        .+.|++++.++.  .+    .....+  .+       
T Consensus       272 P~gia~~pdG~~lyv~d~~------------------------~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~  327 (430)
T 3tc9_A          272 EFHIQFHPSGNYAYIVVVN------------------------QHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGK  327 (430)
T ss_dssp             CEEEEECTTSSEEEEEETT------------------------TTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGG
T ss_pred             ceeEEEcCCCCEEEEEECC------------------------CCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCc
Confidence            89999999998 9999876                        457888876642  21    122111  11       


Q ss_pred             -CccCCce-eEEE---------eCCEEEEecCCCCeEEEEcC
Q 019290          313 -NTLNSVS-EVQE---------YGEYLYTGSSVQPYVVVIKA  343 (343)
Q Consensus       313 -~~~~~~~-~~~~---------~~g~l~i~~~~~~~i~~~~~  343 (343)
                       ..+..+. .+..         .+|+||++....++|.++++
T Consensus       328 ~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~  369 (430)
T 3tc9_A          328 KARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP  369 (430)
T ss_dssp             GCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT
T ss_pred             ceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC
Confidence             1233344 4443         24899999999999999864

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=99.54  E-value=1.3e-12  Score=118.49  Aligned_cols=268  Identities=14%  Similarity=0.128  Sum_probs=153.7

Q ss_pred             CCCCCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCC---CCe
Q 019290           33 GVVGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPV---TCD  109 (343)
Q Consensus        33 ~~~~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~---~~~  109 (343)
                      ++..|.+|+++++|+.+|+....|+|+++++++.....+...+             .........+.+|+++++   ++.
T Consensus        16 ~l~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~-------------~v~~~g~~g~~gia~~pdf~~~g~   82 (353)
T 2g8s_A           16 KLDHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVP-------------DVWAHGQGGLLDVVLAPDFAQSRR   82 (353)
T ss_dssp             EESSEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCC-------------CCCCSTTCSEEEEEECTTHHHHCE
T ss_pred             CCCCcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCc-------------ccccCCCCCceeEEECCCCCCCCE
Confidence            4668999999999984566667899999986542111121100             011122345789999984   689


Q ss_pred             EEEEeCC--------CeEEEEeCCCC--e---EEEcccccC--CCCccCcceeEEeCCCCeEEEEeCCcccccccceeee
Q 019290          110 LYIADAY--------FGLMVVGPNGG--Q---AQQLASSAG--GIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSI  174 (343)
Q Consensus       110 l~v~~~~--------~gi~~~d~~~~--~---~~~~~~~~~--~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~  174 (343)
                      ||++...        +.|.+++.+.+  +   .+.+.....  .......++|++++ ||.||++..........+    
T Consensus        83 lYv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~Gd~~~~~~~q----  157 (353)
T 2g8s_A           83 IWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDG-KGYLFIALGENNQRPTAQ----  157 (353)
T ss_dssp             EEEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECS-SSEEEEEECCTTCGGGGG----
T ss_pred             EEEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECC-CCcEEEEECCCCCCCccC----
Confidence            9999643        34888876432  2   222222211  11234578999999 699999974321100000    


Q ss_pred             eecCCCceEEEEeCCCC-------------ceEEeecCCCCcceeEEecCCCEEEEEEcCCC---eEEEEEccCcc----
Q 019290          175 ATGDRSGRLLKYDPLKK-------------NVTVMYNGLSFPNGVALSNNNSFLLLAESATL---KILRFWLQGER----  234 (343)
Q Consensus       175 ~~~~~~~~v~~~d~~~~-------------~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~---~i~~~~~~~~~----  234 (343)
                      ......++|+|+++++.             ..+.+..++..|.+++++++...||+++....   .|.++...++.    
T Consensus       158 ~~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~  237 (353)
T 2g8s_A          158 DLDKLQGKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPL  237 (353)
T ss_dssp             CTTSCTTEEEEEETTSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTT
T ss_pred             CCCCCCeEEEEECCCCCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCC
Confidence            00112468999998753             23445567788999999996667999987532   45444322210    


Q ss_pred             -c---------c--------ccc-eeeec--CCCCCCceeeCC-------CCCEEEEeccCCCccccccccccccccCCC
Q 019290          235 -T---------T--------YTP-QLFAE--MPRFPDNIKSDS-------KGEFWIAMNSARGKIESNKKTAFCEETAKP  286 (343)
Q Consensus       235 -~---------~--------~~~-~~~~~--~~~~p~~i~~d~-------~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~  286 (343)
                       .         .        ... .....  ....|.++++..       +|++|+++..                    
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~--------------------  297 (353)
T 2g8s_A          238 ATWGINYSGFKIPEAKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALK--------------------  297 (353)
T ss_dssp             BCSSBCTTSSCCTTCCBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETT--------------------
T ss_pred             ccCCCCCCCCccCcccCCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEcc--------------------
Confidence             0         0        000 00000  001255666643       5889999876                    


Q ss_pred             cccCCCeEEEECCCC-CEEEEeeCCCCCccCCceeEEEe-CCEEEEec-CCCCeEEEEcC
Q 019290          287 WFLRDPVGVKFDVNG-NVVDVLDGNEGNTLNSVSEVQEY-GEYLYTGS-SVQPYVVVIKA  343 (343)
Q Consensus       287 ~~~~~~~v~~~d~~g-~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~-~~~~~i~~~~~  343 (343)
                          .+.|.+++.++ +.......-.. ....+..+... +|.||+++ ..+.+|+|+.+
T Consensus       298 ----~~~v~~~~~~~~~~~~~~~~~~~-~~~rp~~v~~~pdG~lyv~td~~~g~I~ri~~  352 (353)
T 2g8s_A          298 ----DKDVIVMSVNGDKVTEDGRILTD-RGQRIRDVRTGPDGYLYVLTDESSGELLKVSP  352 (353)
T ss_dssp             ----TTEEEEEEEETTEEEEEEEESGG-GCCCEEEEEECTTSCEEEEECSTTEEEEEEEC
T ss_pred             ----CCEEEEEEeCCCeEeeeEEcccC-CCCceeEEEECCCCcEEEEEeCCCCEEEEEeC
Confidence                34677776543 33222111111 12245555555 88999975 46788999864

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=99.54  E-value=5.9e-13  Score=124.55  Aligned_cols=213  Identities=11%  Similarity=0.035  Sum_probs=142.4

Q ss_pred             CcCCeeeEEEeC-CCCeEEEEeCC-CeEEEEeCCCCeEEEcccccCCCCccCcceeEE-------eCCCCe-EEEEeCCc
Q 019290           94 LCGRPLGIKFNP-VTCDLYIADAY-FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDI-------DPNTGI-VYFTDSSI  163 (343)
Q Consensus        94 ~~~~p~gi~~~~-~~~~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~-------d~~dg~-l~v~~~~~  163 (343)
                      .+..|.+|++++ .+++||+++.. .+|+++|++++.++.+..... ..+..|+++++       ++ +|+ ||+++...
T Consensus       137 ~~~~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~-~~~~~p~~ia~~~~~~~~d~-~G~~lyvad~~~  214 (496)
T 3kya_A          137 GFSDNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINT-IPTNRIRSIAFNKKIEGYAD-EAEYMIVAIDYD  214 (496)
T ss_dssp             CCCSEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTT-SSCSBEEEEEECCCBTTTBC-TTCEEEEEECCC
T ss_pred             ccCCCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCc-cccCCCcEEEEeecccccCC-CCCEEEEEeCCC
Confidence            355799999997 36899999764 459999999999888765322 23567999999       98 465 99998752


Q ss_pred             ccccccceeeeeecCCCceEEEEeCCC-CceE-----EeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEcc------
Q 019290          164 YFQRRQYFMSIATGDRSGRLLKYDPLK-KNVT-----VMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQ------  231 (343)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~v~~~d~~~-~~~~-----~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~------  231 (343)
                      ...           .....|+.++... +.+.     .....+..|++++++++++.||+++...++|++++++      
T Consensus       215 ~~~-----------~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~  283 (496)
T 3kya_A          215 GKG-----------DESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTI  283 (496)
T ss_dssp             TTG-----------GGEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHH
T ss_pred             CCc-----------ccCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccc
Confidence            000           0023477776543 3331     1223467899999999888899999999999999987      


Q ss_pred             -Ccccc----cc----ceeeec--CCCCCCceeeCCCCC-EEEEeccCCCccccccccccccccCCCcccCCCeEEEECC
Q 019290          232 -GERTT----YT----PQLFAE--MPRFPDNIKSDSKGE-FWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDV  299 (343)
Q Consensus       232 -~~~~~----~~----~~~~~~--~~~~p~~i~~d~~G~-lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~  299 (343)
                       +....    ..    .+.+..  ....|.++++|++|+ |||++..                        .+.|++++.
T Consensus       284 ~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~------------------------~h~I~kid~  339 (496)
T 3kya_A          284 KNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVIN------------------------NHYFMRSDY  339 (496)
T ss_dssp             HTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETT------------------------TTEEEEEEE
T ss_pred             cCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCC------------------------CCEEEEEec
Confidence             21100    00    112222  223578899999998 8999977                        468888776


Q ss_pred             CCC--EE---EEe-eCC------CC----CccCCce-eEEE--------eCCEEEEecCCCCeEEEEcC
Q 019290          300 NGN--VV---DVL-DGN------EG----NTLNSVS-EVQE--------YGEYLYTGSSVQPYVVVIKA  343 (343)
Q Consensus       300 ~g~--~~---~~~-~~~------~~----~~~~~~~-~~~~--------~~g~l~i~~~~~~~i~~~~~  343 (343)
                      ++.  .+   ..+ ..+      ++    ..+..+. .+..        ..|+|||+....++|.++++
T Consensus       340 dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~  408 (496)
T 3kya_A          340 DEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP  408 (496)
T ss_dssp             ETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT
T ss_pred             CCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeC
Confidence            542  22   122 211      11    1334455 4444        35799999999999999874

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=99.54  E-value=1.1e-12  Score=122.12  Aligned_cols=203  Identities=13%  Similarity=0.011  Sum_probs=138.3

Q ss_pred             CcCCeeeEEEeCC--CCeEEEEeCCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccce
Q 019290           94 LCGRPLGIKFNPV--TCDLYIADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYF  171 (343)
Q Consensus        94 ~~~~p~gi~~~~~--~~~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~  171 (343)
                      .+..|.+++++++  +++||+++..+.|++++++++++..+..     ....|+++++|+ +|+||+++....       
T Consensus       137 ~~~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~-----~~~~P~giavd~-dG~lyVad~~~~-------  203 (433)
T 4hw6_A          137 AFDNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT-----NIGQCADVNFTL-NGDMVVVDDQSS-------  203 (433)
T ss_dssp             CCSCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC-----CCSCEEEEEECT-TCCEEEEECCSC-------
T ss_pred             ccCCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec-----CCCCccEEEECC-CCCEEEEcCCCC-------
Confidence            4567999999972  5899999866679999998898887643     235689999999 588999986410       


Q ss_pred             eeeeecCCCceEEEEeCCCCce-EEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccc-eeeec--CCC
Q 019290          172 MSIATGDRSGRLLKYDPLKKNV-TVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTP-QLFAE--MPR  247 (343)
Q Consensus       172 ~~~~~~~~~~~v~~~d~~~~~~-~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~-~~~~~--~~~  247 (343)
                            ....+++.++..++.. ......+..|++++++++.+.||+++..+++|++++.++    +.. ..+..  ...
T Consensus       204 ------~~~~gv~~~~~~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~----g~~~~~~~~~~~~~  273 (433)
T 4hw6_A          204 ------DTNTGIYLFTRASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPAT----GTLTEEEVMMDTKG  273 (433)
T ss_dssp             ------TTSEEEEEECGGGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTT----CCEEEEEEECSCCS
T ss_pred             ------cccceEEEEECCCCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCC----CeEEEEEeccCCCC
Confidence                  0023466676543321 112235678999999995667999999899999999863    222 12222  122


Q ss_pred             CCCceeeCCCCC-EEEEeccCCCccccccccccccccCCCcccCCCeEEEECCCC--CE----EEEeeCC--CC------
Q 019290          248 FPDNIKSDSKGE-FWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNG--NV----VDVLDGN--EG------  312 (343)
Q Consensus       248 ~p~~i~~d~~G~-lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g--~~----~~~~~~~--~~------  312 (343)
                      .+.++++|++|+ ||+++..                        .+.|++++.++  ..    ......+  .+      
T Consensus       274 ~~~~ia~dpdG~~LYvad~~------------------------~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~  329 (433)
T 4hw6_A          274 SNFHIVWHPTGDWAYIIYNG------------------------KHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMG  329 (433)
T ss_dssp             SCEEEEECTTSSEEEEEETT------------------------TTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEG
T ss_pred             CcccEEEeCCCCEEEEEeCC------------------------CCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcc
Confidence            345699999997 9999876                        45788876542  21    1122111  11      


Q ss_pred             --CccCCceeEEE----------eCCEEEEecCCCCeEEEEcC
Q 019290          313 --NTLNSVSEVQE----------YGEYLYTGSSVQPYVVVIKA  343 (343)
Q Consensus       313 --~~~~~~~~~~~----------~~g~l~i~~~~~~~i~~~~~  343 (343)
                        ..+..+..+..          .+|+||++....++|.++++
T Consensus       330 ~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~  372 (433)
T 4hw6_A          330 TGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP  372 (433)
T ss_dssp             GGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT
T ss_pred             cceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC
Confidence              12344555554          48899999999999999874

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.52  E-value=2.8e-12  Score=113.29  Aligned_cols=190  Identities=8%  Similarity=-0.001  Sum_probs=129.5

Q ss_pred             CeeeEEEeCCCCeEEEEeCCC-eEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeee
Q 019290           97 RPLGIKFNPVTCDLYIADAYF-GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIA  175 (343)
Q Consensus        97 ~p~gi~~~~~~~~l~v~~~~~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~  175 (343)
                      -+.|..++++++.||+++... .|+++|+++++.+.+.. .     ..+..+++++ +|++|++..              
T Consensus        14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~-~-----~~~~~i~~~~-dG~l~v~~~--------------   72 (297)
T 3g4e_A           14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRVTM-D-----APVSSVALRQ-SGGYVATIG--------------   72 (297)
T ss_dssp             BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEC-S-----SCEEEEEEBT-TSSEEEEET--------------
T ss_pred             cccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEEeC-C-----CceEEEEECC-CCCEEEEEC--------------
Confidence            467888998678999998654 59999999887654421 1     3578999999 599999662              


Q ss_pred             ecCCCceEEEEeCCCCceEEeecC-----CCCcceeEEecCCCEEEEEEc-----------CCCeEEEEEccCccccccc
Q 019290          176 TGDRSGRLLKYDPLKKNVTVMYNG-----LSFPNGVALSNNNSFLLLAES-----------ATLKILRFWLQGERTTYTP  239 (343)
Q Consensus       176 ~~~~~~~v~~~d~~~~~~~~~~~~-----~~~~~~i~~~~d~~~lyv~~~-----------~~~~i~~~~~~~~~~~~~~  239 (343)
                           .+|+++|+++++.+.+...     ...+++++++++|+ +|+++.           ..+.|++++.++.     .
T Consensus        73 -----~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~-l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~-----~  141 (297)
T 3g4e_A           73 -----TKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGR-YFAGTMAEETAPAVLERHQGALYSLFPDHH-----V  141 (297)
T ss_dssp             -----TEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSC-EEEEEEECCSBTTBCCTTCEEEEEECTTSC-----E
T ss_pred             -----CeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCC-EEEecCCcccccccccCCCcEEEEEECCCC-----E
Confidence                 3699999988887655422     23478899999987 788753           2357888886542     1


Q ss_pred             eeeecCCCCCCceeeCCCCC-EEEEeccCCCccccccccccccccCCCcccCCCeEEEEC---CCCCEE--EEeeCCCCC
Q 019290          240 QLFAEMPRFPDNIKSDSKGE-FWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFD---VNGNVV--DVLDGNEGN  313 (343)
Q Consensus       240 ~~~~~~~~~p~~i~~d~~G~-lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d---~~g~~~--~~~~~~~~~  313 (343)
                      ..+......|++++++++|+ +|+++..                        .+.|++++   .+|...  ..+..... 
T Consensus       142 ~~~~~~~~~pngi~~spdg~~lyv~~~~------------------------~~~i~~~~~d~~~G~~~~~~~~~~~~~-  196 (297)
T 3g4e_A          142 KKYFDQVDISNGLDWSLDHKIFYYIDSL------------------------SYSVDAFDYDLQTGQISNRRSVYKLEK-  196 (297)
T ss_dssp             EEEEEEESBEEEEEECTTSCEEEEEEGG------------------------GTEEEEEEECTTTCCEEEEEEEEECCG-
T ss_pred             EEEeeccccccceEEcCCCCEEEEecCC------------------------CCcEEEEeccCCCCcccCcEEEEECCC-
Confidence            12222223488999999995 7888765                        23666765   345542  22221111 


Q ss_pred             ccCCceeEEEe-CCEEEEecCCCCeEEEEcC
Q 019290          314 TLNSVSEVQEY-GEYLYTGSSVQPYVVVIKA  343 (343)
Q Consensus       314 ~~~~~~~~~~~-~g~l~i~~~~~~~i~~~~~  343 (343)
                      ....+..+..+ +|+||+++...+.|.+|++
T Consensus       197 ~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~  227 (297)
T 3g4e_A          197 EEQIPDGMCIDAEGKLWVACYNGGRVIRLDP  227 (297)
T ss_dssp             GGCEEEEEEEBTTSCEEEEEETTTEEEEECT
T ss_pred             CCCCCCeeEECCCCCEEEEEcCCCEEEEEcC
Confidence            11234555555 8999999999999999975

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.52  E-value=1.8e-11  Score=110.70  Aligned_cols=247  Identities=14%  Similarity=0.148  Sum_probs=144.4

Q ss_pred             CCCCCceEEEcCCCCeeEEEecC----CEEE--EEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCC
Q 019290           33 GVVGPESLAFDCNGEGPYVGVSD----GRIL--KWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPV  106 (343)
Q Consensus        33 ~~~~p~~l~~d~~g~~l~~~~~~----g~i~--~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~  106 (343)
                      ....|..++++++|+.+|+...+    +.+.  .++..+++...+....                 .....|.++++ . 
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~-----------------~~~~~p~~~~~-d-  108 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQK-----------------TMGADPCYLTT-N-  108 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEE-----------------CSSSCEEEEEE-C-
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEec-----------------cCCCCcEEEEE-C-
Confidence            34579999999999988876653    6665  4555556555543211                 12235778888 3 


Q ss_pred             CCeEEEEeCCCe-EEEEeCCC-CeEEEccc----cc-----CCCCccCcceeEEeCCCCe-EEEEeCCcccccccceeee
Q 019290          107 TCDLYIADAYFG-LMVVGPNG-GQAQQLAS----SA-----GGIPFRFTNDLDIDPNTGI-VYFTDSSIYFQRRQYFMSI  174 (343)
Q Consensus       107 ~~~l~v~~~~~g-i~~~d~~~-~~~~~~~~----~~-----~~~~~~~~~~i~~d~~dg~-l~v~~~~~~~~~~~~~~~~  174 (343)
                      ++.||+++...+ +..++.++ +.+..+..    ..     ..+....++.+++++ ||+ +|+++..            
T Consensus       109 g~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~------------  175 (361)
T 3scy_A          109 GKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITP-DGKYLLADDLG------------  175 (361)
T ss_dssp             SSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECT-TSSEEEEEETT------------
T ss_pred             CCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECC-CCCEEEEEeCC------------
Confidence            778999975544 77888753 32222211    00     011123467899999 576 8887754            


Q ss_pred             eecCCCceEEEE--eCCCC----c-e-------EEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccce
Q 019290          175 ATGDRSGRLLKY--DPLKK----N-V-------TVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQ  240 (343)
Q Consensus       175 ~~~~~~~~v~~~--d~~~~----~-~-------~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~  240 (343)
                           .+.|..|  +..++    + +       .........+..+++++|++.+|++....+.|.+|++++... ....
T Consensus       176 -----~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~-~~~~  249 (361)
T 3scy_A          176 -----TDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGML-DEIQ  249 (361)
T ss_dssp             -----TTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEE-EEEE
T ss_pred             -----CCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCce-EEeE
Confidence                 3345444  54443    2 2       112234456889999999999999987789999999874211 1112


Q ss_pred             eeecCC---CCCCceeeCCCCCE-EEEeccCCCccccccccccccccCCCcccCCCeEEEECC-CCCEEEEeeCCCCCcc
Q 019290          241 LFAEMP---RFPDNIKSDSKGEF-WIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDV-NGNVVDVLDGNEGNTL  315 (343)
Q Consensus       241 ~~~~~~---~~p~~i~~d~~G~l-wi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~~~~~~~~  315 (343)
                      .+...+   ..|.+++++++|+. |++.......+                     .++.+++ +|+.......+.+   
T Consensus       250 ~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i---------------------~v~~~~~~~g~~~~~~~~~~g---  305 (361)
T 3scy_A          250 TVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGV---------------------AIFKVDETNGTLTKVGYQLTG---  305 (361)
T ss_dssp             EEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEE---------------------EEEEECTTTCCEEEEEEEECS---
T ss_pred             EEecCCCCCCCcccEEECCCCCEEEEECCCCCCEE---------------------EEEEEcCCCCcEEEeeEecCC---
Confidence            121111   12457899999974 55543202222                     5666664 4554322221112   


Q ss_pred             CCceeEEE--eCCEEEEecCCCCeEEEE
Q 019290          316 NSVSEVQE--YGEYLYTGSSVQPYVVVI  341 (343)
Q Consensus       316 ~~~~~~~~--~~g~l~i~~~~~~~i~~~  341 (343)
                      ..+..+..  ++..||+++...+.|.+|
T Consensus       306 ~~~~~~~~spdg~~l~~~~~~~~~v~v~  333 (361)
T 3scy_A          306 IHPRNFIITPNGKYLLVACRDTNVIQIF  333 (361)
T ss_dssp             SCCCEEEECTTSCEEEEEETTTTEEEEE
T ss_pred             CCCceEEECCCCCEEEEEECCCCCEEEE
Confidence            12333333  355699999888888774

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.51  E-value=1.7e-12  Score=117.28  Aligned_cols=195  Identities=14%  Similarity=0.193  Sum_probs=131.7

Q ss_pred             CCCCCceEEEcCCCCeeEEEec-----CCEEEEEEcCCCCe-EEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCC
Q 019290           33 GVVGPESLAFDCNGEGPYVGVS-----DGRILKWKAANSGW-TEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPV  106 (343)
Q Consensus        33 ~~~~p~~l~~d~~g~~l~~~~~-----~g~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~  106 (343)
                      .+..|.++++|++|++|+++..     .++|++||+.+++. ..+.....              .......+++++++++
T Consensus        65 ~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~--------------~~~~~~~~~~v~vd~~  130 (343)
T 2qe8_A           65 TFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPP--------------ITLSNSFVNDLAVDLI  130 (343)
T ss_dssp             CCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTT--------------TSCTTCCCCEEEEETT
T ss_pred             ceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChh--------------hcccccccceEEEecC
Confidence            4568999999999995556554     57999999987763 33321100              0012235789999975


Q ss_pred             CCeEEEEeC---C-CeEEEEeCCCCeEEEccccc------------CCCC-------------ccCcceeEEeCCCC-eE
Q 019290          107 TCDLYIADA---Y-FGLMVVGPNGGQAQQLASSA------------GGIP-------------FRFTNDLDIDPNTG-IV  156 (343)
Q Consensus       107 ~~~l~v~~~---~-~gi~~~d~~~~~~~~~~~~~------------~~~~-------------~~~~~~i~~d~~dg-~l  156 (343)
                      ++.+|+++.   . .+|+++|+++++...+....            .+..             ...+++|++++ || .|
T Consensus       131 ~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~-dg~~l  209 (343)
T 2qe8_A          131 HNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDA-ENEWL  209 (343)
T ss_dssp             TTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECT-TSCEE
T ss_pred             CCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEecc-CCCEE
Confidence            689999986   3 46999999888765543210            0000             12468999999 46 69


Q ss_pred             EEEeCCcccccccceeeeeecCCCceEEEEeCC---CCc---------eEEeecCCCCcceeEEecCCCEEEEEEcCCCe
Q 019290          157 YFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPL---KKN---------VTVMYNGLSFPNGVALSNNNSFLLLAESATLK  224 (343)
Q Consensus       157 ~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~---~~~---------~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~  224 (343)
                      |+++..                 ...|++++..   .+.         +.. ......|.+++++++| .+|+++...++
T Consensus       210 y~~~~~-----------------~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~g~~g~pdgia~d~~G-~l~va~~~~~~  270 (343)
T 2qe8_A          210 YLSPMH-----------------STSMYRIKSADLSNLQLTDAELGSKIER-YSEKPICDGISIDKDH-NIYVGDLAHSA  270 (343)
T ss_dssp             EEEESS-----------------CSEEEEEEHHHHTCTTCCHHHHHTTCEE-EEECCSCSCEEECTTC-CEEEEEGGGTE
T ss_pred             EEEeCC-----------------CCeEEEEEHHHhcCCCCChhhhhcceEe-cccCCCCceEEECCCC-CEEEEccCCCe
Confidence            998765                 4578888742   111         111 1123468999999987 59999999999


Q ss_pred             EEEEEc-cCccccccceeeecC--CCCCCceeeCCCCCEEEEecc
Q 019290          225 ILRFWL-QGERTTYTPQLFAEM--PRFPDNIKSDSKGEFWIAMNS  266 (343)
Q Consensus       225 i~~~~~-~~~~~~~~~~~~~~~--~~~p~~i~~d~~G~lwi~~~~  266 (343)
                      |.+|+. ++     +...+...  ...|.+++++++|++|++++.
T Consensus       271 V~~~d~~~G-----~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~  310 (343)
T 2qe8_A          271 IGVITSADR-----AYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQ  310 (343)
T ss_dssp             EEEEETTTT-----EEEEEEECGGGSCEEEEEECTTSCEEEEECC
T ss_pred             EEEEECCCC-----CEEEEEECCceecCCeeEECCCCcEEEEeCc
Confidence            999997 44     22333322  235899999999999999875

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.50  E-value=1.4e-12  Score=115.67  Aligned_cols=186  Identities=13%  Similarity=0.141  Sum_probs=124.5

Q ss_pred             CCceEEEcCCCCeeEEEe-cCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEe
Q 019290           36 GPESLAFDCNGEGPYVGV-SDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIAD  114 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~-~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~  114 (343)
                      .|.+++++++|+ +|++. .+++|++++++ +++..+.....               ......|+++++++ +|++|+++
T Consensus        87 ~~~gl~~d~dG~-l~v~~~~~~~v~~~~~~-g~~~~~~~~~~---------------~~~~~~~~~i~~d~-dG~l~~td  148 (305)
T 3dr2_A           87 FTNGNAVDAQQR-LVHCEHGRRAITRSDAD-GQAHLLVGRYA---------------GKRLNSPNDLIVAR-DGAIWFTD  148 (305)
T ss_dssp             CEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEEECEET---------------TEECSCCCCEEECT-TSCEEEEC
T ss_pred             ccceeeECCCCC-EEEEECCCCEEEEECCC-CCEEEEEeccC---------------CCccCCCCCEEECC-CCCEEEeC
Confidence            689999999999 66554 45799999987 55655532110               01224578899998 89999964


Q ss_pred             C------------------CCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCe-EEEEeCCcccccccceeeee
Q 019290          115 A------------------YFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGI-VYFTDSSIYFQRRQYFMSIA  175 (343)
Q Consensus       115 ~------------------~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~-l~v~~~~~~~~~~~~~~~~~  175 (343)
                      .                  ..+|+++|+++++++.+. .     ...++++++++ |++ ||+++....           
T Consensus       149 ~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~-----~~~p~gl~~sp-dg~~lyv~~~~~~-----------  210 (305)
T 3dr2_A          149 PPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-D-----LDHPNGLAFSP-DEQTLYVSQTPEQ-----------  210 (305)
T ss_dssp             CSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-E-----ESSEEEEEECT-TSSEEEEEECCC------------
T ss_pred             cCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-c-----CCCCcceEEcC-CCCEEEEEecCCc-----------
Confidence            2                  246999999888777653 1     24688999999 565 999876410           


Q ss_pred             ecCCCceEEEEeCCCCce---EEee-cCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCc
Q 019290          176 TGDRSGRLLKYDPLKKNV---TVMY-NGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDN  251 (343)
Q Consensus       176 ~~~~~~~v~~~d~~~~~~---~~~~-~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~  251 (343)
                       ......|++++.+++.+   +.+. .....|.+++++++|+ ||++.  .++|++|+.++.    ....+. .+..+.+
T Consensus       211 -~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~-lwv~~--~~gv~~~~~~g~----~~~~~~-~~~~~~~  281 (305)
T 3dr2_A          211 -GHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGW-LWSSS--GTGVCVFDSDGQ----LLGHIP-TPGTASN  281 (305)
T ss_dssp             ---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSC-EEECC--SSEEEEECTTSC----EEEEEE-CSSCCCE
T ss_pred             -CCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCC-EEEec--CCcEEEECCCCC----EEEEEE-CCCceeE
Confidence             00125688887654332   1221 1234588999999987 78775  467999998652    222332 2224788


Q ss_pred             eeeCCCC-CEEEEecc
Q 019290          252 IKSDSKG-EFWIAMNS  266 (343)
Q Consensus       252 i~~d~~G-~lwi~~~~  266 (343)
                      +++++++ .||+++..
T Consensus       282 ~~f~~d~~~L~it~~~  297 (305)
T 3dr2_A          282 CTFDQAQQRLFITGGP  297 (305)
T ss_dssp             EEECTTSCEEEEEETT
T ss_pred             EEEeCCCCEEEEEcCC
Confidence            8888776 69999876

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=99.50  E-value=2.4e-11  Score=108.99  Aligned_cols=261  Identities=15%  Similarity=0.130  Sum_probs=154.8

Q ss_pred             CCCCCceEEEcCCCCeeEEEec-CCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCC---CC
Q 019290           33 GVVGPESLAFDCNGEGPYVGVS-DGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPV---TC  108 (343)
Q Consensus        33 ~~~~p~~l~~d~~g~~l~~~~~-~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~---~~  108 (343)
                      ++..|.+|++.++|+ +|+... .|+|+++++.++....+...+.             ........+.||+++++   ++
T Consensus        30 gL~~P~~ia~~pdG~-llVter~~G~I~~v~~~~g~~~~v~~~~~-------------v~~~g~~GllGia~~Pdf~~~g   95 (347)
T 3das_A           30 GLNSPWGLAPLPGGD-LLVSSRDEATITRVDAKTGRKTELGEVPG-------------VSPSGEGGLLGIALSPDYASDH   95 (347)
T ss_dssp             CCSSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEECTT-------------CCCBTTBSEEEEEECTTHHHHC
T ss_pred             CCCCceEEEEcCCCc-EEEEEecCCEEEEEECCCCcEeeecccCc-------------eeecCCCCceeeEeccccccCC
Confidence            677899999999999 666655 8999999887666555432110             11123446899999973   58


Q ss_pred             eEEEEeC---CCeEEEEeCCCC--------eEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeec
Q 019290          109 DLYIADA---YFGLMVVGPNGG--------QAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATG  177 (343)
Q Consensus       109 ~l~v~~~---~~gi~~~d~~~~--------~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~  177 (343)
                      .||+..+   .+.|.++....+        ..+.+.........+....|++++ ||.|||+..........+.    ..
T Consensus        96 ~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgp-DG~Lyvt~Gd~~~~~~~qd----~~  170 (347)
T 3das_A           96 MVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGP-DKMLYAGTGESGDTGLSQD----RK  170 (347)
T ss_dssp             EEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECT-TSCEEEECBCTTCGGGTTC----TT
T ss_pred             EEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCC-CCCEEEEECCCCCCccccC----CC
Confidence            8999632   356998876542        123332222222335678899999 6999998643110000000    01


Q ss_pred             CCCceEEEEeCCCC--------ceEEeecCCCCcceeEEecCCCEEEEEEcCC---CeEEEEEccCcc----ccc-----
Q 019290          178 DRSGRLLKYDPLKK--------NVTVMYNGLSFPNGVALSNNNSFLLLAESAT---LKILRFWLQGER----TTY-----  237 (343)
Q Consensus       178 ~~~~~v~~~d~~~~--------~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~---~~i~~~~~~~~~----~~~-----  237 (343)
                      ...++|+|+++++.        ..+.+..++..+.++++++++ .||+++...   ..|.++...++.    ..+     
T Consensus       171 ~~~G~IlRi~~dG~ip~~nPf~~~~i~a~G~RNp~Gla~dp~G-~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~  249 (347)
T 3das_A          171 SLGGKILRMTPDGEPAPGNPFPGSPVYSYGHRNVQGLAWDDKQ-RLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGS  249 (347)
T ss_dssp             CSTTCEEEECTTSSBCTTCSSTTCCEEEBCCSBCCEEEECTTC-CEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCT
T ss_pred             CCCCEEEEEeCCCCccCCCCCCCCeEEeeCCCCcceEEECCCC-CEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCc
Confidence            12578999998754        234566788889999999975 589998654   345555432210    000     


Q ss_pred             cc-eeeec-CC--CCCCceeeCCCCCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECCCCCE-----EEEee
Q 019290          238 TP-QLFAE-MP--RFPDNIKSDSKGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNV-----VDVLD  308 (343)
Q Consensus       238 ~~-~~~~~-~~--~~p~~i~~d~~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~-----~~~~~  308 (343)
                      .+ ..+.. ..  ..|.|+++. +|.+|++... +                       ..|.++..++..     ...+.
T Consensus       250 ~~~~P~~~~~~~~~ap~G~~~~-~g~~~~~~l~-~-----------------------~~l~~v~~~~~~~~~~~e~~l~  304 (347)
T 3das_A          250 GFHDPVAQWSTDEASPSGIAYA-EGSVWMAGLR-G-----------------------ERLWRIPLKGTAAAADPQAFLE  304 (347)
T ss_dssp             TCCCCSEEECTTTCCEEEEEEE-TTEEEEEEST-T-----------------------CSEEEEEEETTEESSCCEEEST
T ss_pred             cccCCcEecCCCCCCCcceEEE-cCceeecccc-C-----------------------CEEEEEEecCCceecceEEeec
Confidence            00 00111 11  136678776 5889999876 2                       355566433221     12222


Q ss_pred             CCCCCccCCceeEEEe-CCEEEEecCCCC----------eEEEEc
Q 019290          309 GNEGNTLNSVSEVQEY-GEYLYTGSSVQP----------YVVVIK  342 (343)
Q Consensus       309 ~~~~~~~~~~~~~~~~-~g~l~i~~~~~~----------~i~~~~  342 (343)
                      .    ....+..+... +|.|||++.+.+          +|+|+.
T Consensus       305 ~----~~gR~~dv~~~pDG~lyv~td~~~g~g~p~~~ddri~r~~  345 (347)
T 3das_A          305 G----EYGRLRTVAPAGGDKLWLVTSNTDGRGDAKGGDDRILELE  345 (347)
T ss_dssp             T----TSSCEEEEEEEETTEEEEEECTTSSSSCCCTTCSCEEEEE
T ss_pred             C----CCCCccEEEECCCCcEEEEEcCCCCCCCCCCCCCEEEEEe
Confidence            1    12345555444 999999987655          677764

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.47  E-value=7e-12  Score=111.72  Aligned_cols=173  Identities=10%  Similarity=0.063  Sum_probs=113.0

Q ss_pred             CCeEEEEeCCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEE
Q 019290          107 TCDLYIADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKY  186 (343)
Q Consensus       107 ~~~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~  186 (343)
                      ++.||+++...+++.+|++ ++........    ......+++++ +|.+|+++.                  .++|+++
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~----~~~~~~~~~~~-~g~l~vgt~------------------~~~l~~~  162 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-GTEKWRFKTK----KAIYATPIVSE-DGTIYVGSN------------------DNYLYAI  162 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-SCEEEEEECS----SCCCSCCEECT-TSCEEEECT------------------TSEEEEE
T ss_pred             CCEEEEEecCCEEEEEcCC-CCEEEEEcCC----CceeeeeEEcC-CCEEEEEcC------------------CCEEEEE
Confidence            6899999656779999998 6554322211    12356778888 599999664                  3579999


Q ss_pred             eCCCCceE-EeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEec
Q 019290          187 DPLKKNVT-VMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMN  265 (343)
Q Consensus       187 d~~~~~~~-~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~  265 (343)
                      |++ ++.. .+.........++++.++. +|++.   +.|++++..+.    ....+.........+++|++|+||+++.
T Consensus       163 d~~-g~~~~~~~~~~~~~~~~~~d~~g~-l~v~t---~~l~~~d~~g~----~~~~~~~~~~~~~~~~~~~~g~l~v~t~  233 (330)
T 3hxj_A          163 NPD-GTEKWRFKTNDAITSAASIGKDGT-IYFGS---DKVYAINPDGT----EKWNFYAGYWTVTRPAISEDGTIYVTSL  233 (330)
T ss_dssp             CTT-SCEEEEEECSSCCCSCCEECTTCC-EEEES---SSEEEECTTSC----EEEEECCSSCCCSCCEECTTSCEEEEET
T ss_pred             CCC-CCEeEEEecCCCceeeeEEcCCCE-EEEEe---CEEEEECCCCc----EEEEEccCCcceeceEECCCCeEEEEcC
Confidence            988 5543 3322233455677766664 77764   78999984331    1111111223356788999999999986


Q ss_pred             cCCCccccccccccccccCCCcccCCCeEEEECCCCCEEEEeeCCCCCccCCceeEEEe-CCEEEEecCCCCeEEEEc
Q 019290          266 SARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEGNTLNSVSEVQEY-GEYLYTGSSVQPYVVVIK  342 (343)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~~~~i~~~~  342 (343)
                      .                         ++++++|++|+.+..+..+..    ....+..+ +|+||+++.. ..+.+++
T Consensus       234 ~-------------------------~gl~~~~~~g~~~~~~~~~~~----~~~~~~~~~~g~l~v~t~~-ggl~~~d  281 (330)
T 3hxj_A          234 D-------------------------GHLYAINPDGTEKWRFKTGKR----IESSPVIGNTDTIYFGSYD-GHLYAIN  281 (330)
T ss_dssp             T-------------------------TEEEEECTTSCEEEEEECSSC----CCSCCEECTTSCEEEECTT-CEEEEEC
T ss_pred             C-------------------------CeEEEECCCCCEeEEeeCCCC----ccccceEcCCCeEEEecCC-CCEEEEC
Confidence            4                         488999999988776664332    12233345 8999999874 3566665

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=99.47  E-value=3.9e-11  Score=102.96  Aligned_cols=201  Identities=11%  Similarity=0.106  Sum_probs=130.3

Q ss_pred             ccCCCC-CCCceEEEcCCCCeeEE-EecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCC
Q 019290           29 LQLPGV-VGPESLAFDCNGEGPYV-GVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPV  106 (343)
Q Consensus        29 ~~~~~~-~~p~~l~~d~~g~~l~~-~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~  106 (343)
                      .++|++ ..+.+|+++++++.||+ ...+++|+.+|+.+.....+..                   .....+.||++.. 
T Consensus        20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g~v~~~i~l-------------------~g~~D~EGIa~~~-   79 (255)
T 3qqz_A           20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTNGDLIRTIPL-------------------DFVKDLETIEYIG-   79 (255)
T ss_dssp             EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETTCCEEEEEEC-------------------SSCSSEEEEEECS-
T ss_pred             eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCCCCEEEEEec-------------------CCCCChHHeEEeC-
Confidence            467755 36999999998777885 6678899999998443333321                   2234578999997 


Q ss_pred             CCeEEEEeCCC-eEEEEeCCCC-eEEEc--ccc--cCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCC
Q 019290          107 TCDLYIADAYF-GLMVVGPNGG-QAQQL--ASS--AGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRS  180 (343)
Q Consensus       107 ~~~l~v~~~~~-gi~~~d~~~~-~~~~~--~~~--~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~  180 (343)
                      ++.+|+++... +++.++.... .+...  ...  ..........++++|+.+++||++....                .
T Consensus        80 ~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~----------------p  143 (255)
T 3qqz_A           80 DNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKN----------------P  143 (255)
T ss_dssp             TTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESS----------------S
T ss_pred             CCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcC----------------C
Confidence            88898986544 5777765332 21111  111  1112234568999999656899976431                3


Q ss_pred             ceEEEEeC--CCCceEEee-------cCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecC------
Q 019290          181 GRLLKYDP--LKKNVTVMY-------NGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEM------  245 (343)
Q Consensus       181 ~~v~~~d~--~~~~~~~~~-------~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~------  245 (343)
                      ..||.++.  .+..+..+.       .....+.+++++|..+.+|+.+.....|..+|.++.-. .........      
T Consensus       144 ~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~-~~~~L~~g~~~l~~~  222 (255)
T 3qqz_A          144 IEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVI-GEMSLTKGSRGLSHN  222 (255)
T ss_dssp             EEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCEE-EEEECSTTGGGCSSC
T ss_pred             ceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEE-EEEEcCCccCCcccc
Confidence            36888872  222233221       12346789999999999999999999999999877422 211111111      


Q ss_pred             CCCCCceeeCCCCCEEEEecc
Q 019290          246 PRFPDNIKSDSKGEFWIAMNS  266 (343)
Q Consensus       246 ~~~p~~i~~d~~G~lwi~~~~  266 (343)
                      -..|.|+++|++|++||++-.
T Consensus       223 ~~qpEGia~d~~G~lyIvsE~  243 (255)
T 3qqz_A          223 IKQAEGVAMDASGNIYIVSEP  243 (255)
T ss_dssp             CCSEEEEEECTTCCEEEEETT
T ss_pred             cCCCCeeEECCCCCEEEEcCC
Confidence            124899999999999999643

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.47  E-value=8e-11  Score=104.91  Aligned_cols=241  Identities=15%  Similarity=0.180  Sum_probs=143.1

Q ss_pred             CCceEEEcCCCCeeEEEecC-CEEEEEEcC--CCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEE
Q 019290           36 GPESLAFDCNGEGPYVGVSD-GRILKWKAA--NSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYI  112 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~-g~i~~~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v  112 (343)
                      .|.+++++++|+.+|++..+ +.|..|+.+  ++....+...                  .....|.+++++++++.||+
T Consensus        39 ~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~s~dg~~l~~  100 (343)
T 1ri6_A           39 QVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAES------------------ALPGSLTHISTDHQGQFVFV  100 (343)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEE------------------ECSSCCSEEEECTTSSEEEE
T ss_pred             CCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeecccc------------------ccCCCCcEEEEcCCCCEEEE
Confidence            79999999999977776655 888888775  5555443211                  11125788999995556888


Q ss_pred             EeCCCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCC-eEEEEeCCcccccccceeeeeecCCCceEEEEeCCC
Q 019290          113 ADAYFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTG-IVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLK  190 (343)
Q Consensus       113 ~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg-~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~  190 (343)
                      +....+ |..++.+++...........  ...+..+++++ +| .+|+++..                 .+.|..||..+
T Consensus       101 ~~~~~~~i~~~d~~~~~~~~~~~~~~~--~~~~~~~~~s~-dg~~l~~~~~~-----------------~~~v~~~d~~~  160 (343)
T 1ri6_A          101 GSYNAGNVSVTRLEDGLPVGVVDVVEG--LDGCHSANISP-DNRTLWVPALK-----------------QDRICLFTVSD  160 (343)
T ss_dssp             EETTTTEEEEEEEETTEEEEEEEEECC--CTTBCCCEECT-TSSEEEEEEGG-----------------GTEEEEEEECT
T ss_pred             EecCCCeEEEEECCCCccccccccccC--CCCceEEEECC-CCCEEEEecCC-----------------CCEEEEEEecC
Confidence            876444 88888743332222111111  13478899999 46 47776533                 45688887765


Q ss_pred             -CceEE-----ee-cCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCcc-ccccceeeecCC------CCCCceeeCC
Q 019290          191 -KNVTV-----MY-NGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGER-TTYTPQLFAEMP------RFPDNIKSDS  256 (343)
Q Consensus       191 -~~~~~-----~~-~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~------~~p~~i~~d~  256 (343)
                       ++...     .. .....+.+++++++++.+|++....+.|..|+++... .+.....+...+      ..+..+++++
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~  240 (343)
T 1ri6_A          161 DGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITP  240 (343)
T ss_dssp             TSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECT
T ss_pred             CCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECC
Confidence             55432     11 2334678899999999999998788999999986321 101111121111      1233588999


Q ss_pred             CCC-EEEEeccCCCccccccccccccccCCCcccCCCeEEEECCC--C-CEEEEeeCCCCCccCCceeEEE--eCCEEEE
Q 019290          257 KGE-FWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVN--G-NVVDVLDGNEGNTLNSVSEVQE--YGEYLYT  330 (343)
Q Consensus       257 ~G~-lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~--g-~~~~~~~~~~~~~~~~~~~~~~--~~g~l~i  330 (343)
                      +|+ +|++...                        .+.+..++.+  + +.......+.+.  . +..+..  ++..||+
T Consensus       241 dg~~l~v~~~~------------------------~~~i~v~d~~~~~~~~~~~~~~~~~~--~-~~~~~~s~dg~~l~~  293 (343)
T 1ri6_A          241 DGRHLYACDRT------------------------ASLITVFSVSEDGSVLSKEGFQPTET--Q-PRGFNVDHSGKYLIA  293 (343)
T ss_dssp             TSSEEEEEETT------------------------TTEEEEEEECTTSCCEEEEEEEECSS--S-CCCEEECTTSSEEEE
T ss_pred             CCCEEEEEecC------------------------CCEEEEEEEcCCCCceEEeeeecCCC--c-cceEEECCCCCEEEE
Confidence            995 5656544                        2345555543  3 222221111111  1 333333  3556888


Q ss_pred             ecCCCCeEEEE
Q 019290          331 GSSVQPYVVVI  341 (343)
Q Consensus       331 ~~~~~~~i~~~  341 (343)
                      ++...+.|.++
T Consensus       294 ~~~~~~~v~v~  304 (343)
T 1ri6_A          294 AGQKSHHISVY  304 (343)
T ss_dssp             ECTTTCEEEEE
T ss_pred             ecCCCCeEEEE
Confidence            88777777776

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.47  E-value=1.2e-11  Score=106.84  Aligned_cols=196  Identities=11%  Similarity=0.123  Sum_probs=134.3

Q ss_pred             CeeeEEEeCCCCeEEEEeC---CCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceee
Q 019290           97 RPLGIKFNPVTCDLYIADA---YFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMS  173 (343)
Q Consensus        97 ~p~gi~~~~~~~~l~v~~~---~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~  173 (343)
                      .+.|+.+++ ++.||+++.   .+.|.++|++++++..-.....   ..+..+++++.  +++|+++..           
T Consensus        22 f~~Gl~~~~-dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~---~~fgeGi~~~g--~~lyv~t~~-----------   84 (266)
T 2iwa_A           22 FTQGLVYAE-NDTLFESTGLYGRSSVRQVALQTGKVENIHKMDD---SYFGEGLTLLN--EKLYQVVWL-----------   84 (266)
T ss_dssp             CEEEEEECS-TTEEEEEECSTTTCEEEEEETTTCCEEEEEECCT---TCCEEEEEEET--TEEEEEETT-----------
T ss_pred             CcccEEEeC-CCeEEEECCCCCCCEEEEEECCCCCEEEEEecCC---CcceEEEEEeC--CEEEEEEec-----------
Confidence            478999998 689999964   2469999999998765433221   13455788885  699998865           


Q ss_pred             eeecCCCceEEEEeCCCCceEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeec-CC-CCCCc
Q 019290          174 IATGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAE-MP-RFPDN  251 (343)
Q Consensus       174 ~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~-~~p~~  251 (343)
                            .+.++.+|+++.+...-.... .+.+..+++|++.+|+++ .++.|+.+|..+......+.+-.. .+ ..|++
T Consensus        85 ------~~~v~viD~~t~~v~~~i~~g-~~~g~glt~Dg~~l~vs~-gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~ne  156 (266)
T 2iwa_A           85 ------KNIGFIYDRRTLSNIKNFTHQ-MKDGWGLATDGKILYGSD-GTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNE  156 (266)
T ss_dssp             ------CSEEEEEETTTTEEEEEEECC-SSSCCEEEECSSSEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEE
T ss_pred             ------CCEEEEEECCCCcEEEEEECC-CCCeEEEEECCCEEEEEC-CCCeEEEEECCCCcEEEEEEECCCCccccccee
Confidence                  678999999877654323222 466777888999999997 688999999866332122111110 01 13556


Q ss_pred             eeeCCCCCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECC-CCCEEEEeeCCC--------C-CccCCceeE
Q 019290          252 IKSDSKGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDV-NGNVVDVLDGNE--------G-NTLNSVSEV  321 (343)
Q Consensus       252 i~~d~~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~~~~--------~-~~~~~~~~~  321 (343)
                      +... +|++|++.+.                        .+.|.++|+ .++++..+..+.        . .......++
T Consensus       157 le~~-dg~lyvn~~~------------------------~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGI  211 (266)
T 2iwa_A          157 LEYI-NGEVWANIWQ------------------------TDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGI  211 (266)
T ss_dssp             EEEE-TTEEEEEETT------------------------SSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEE
T ss_pred             EEEE-CCEEEEecCC------------------------CCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEE
Confidence            7666 7899999876                        458899998 688877776421        0 011233444


Q ss_pred             EEe--CCEEEEecCCCCeEEEEc
Q 019290          322 QEY--GEYLYTGSSVQPYVVVIK  342 (343)
Q Consensus       322 ~~~--~g~l~i~~~~~~~i~~~~  342 (343)
                      ..+  ++++|+++...+.+.+++
T Consensus       212 a~~~~~~~lfVTgk~~~~v~~i~  234 (266)
T 2iwa_A          212 AWDQENKRIFVTGKLWPKLFEIK  234 (266)
T ss_dssp             EEETTTTEEEEEETTCSEEEEEE
T ss_pred             EEcCCCCEEEEECCCCCeEEEEE
Confidence            443  679999999999999886

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.47  E-value=5.1e-11  Score=107.11  Aligned_cols=204  Identities=17%  Similarity=0.134  Sum_probs=126.0

Q ss_pred             CCCceEEEcCCCCeeEEEe-cCCEEEEEEcC-CCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEE
Q 019290           35 VGPESLAFDCNGEGPYVGV-SDGRILKWKAA-NSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYI  112 (343)
Q Consensus        35 ~~p~~l~~d~~g~~l~~~~-~~g~i~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v  112 (343)
                      ..|.+++++++|+.+|++. .++.+..|+.. ++....+......       +.+ +........++++++++ ++++|+
T Consensus        86 ~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~-------~~~-p~~~~~~~~~~~~~~sp-dg~l~v  156 (347)
T 3hfq_A           86 TPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHS-------GHG-PRPEQDGSHIHYTDLTP-DNRLAV  156 (347)
T ss_dssp             CCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECC-------CCC-SSTTCSSCCEEEEEECT-TSCEEE
T ss_pred             CCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecC-------CCC-CCccccCCCceEEEECC-CCcEEE
Confidence            4799999999999788665 67888888874 3444433211100       000 00011233578899999 666999


Q ss_pred             EeCCCe-EEEEeCC-CCeEEEcccccCCCCccCcceeEEeCCCCe-EEEEeCCcccccccceeeeeecCCCce--EEEEe
Q 019290          113 ADAYFG-LMVVGPN-GGQAQQLASSAGGIPFRFTNDLDIDPNTGI-VYFTDSSIYFQRRQYFMSIATGDRSGR--LLKYD  187 (343)
Q Consensus       113 ~~~~~g-i~~~d~~-~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~-l~v~~~~~~~~~~~~~~~~~~~~~~~~--v~~~d  187 (343)
                      ++...+ +..++.+ +++........ ......+..+++++ ||+ +|+++..                 .+.  +|.++
T Consensus       157 ~~~~~~~v~~~~~~~~g~~~~~~~~~-~~~g~~p~~~~~sp-dg~~l~v~~~~-----------------~~~v~v~~~~  217 (347)
T 3hfq_A          157 IDLGSDKVYVYNVSDAGQLSEQSVLT-MEAGFGPRHLVFSP-DGQYAFLAGEL-----------------SSQIASLKYD  217 (347)
T ss_dssp             EETTTTEEEEEEECTTSCEEEEEEEE-CCTTCCEEEEEECT-TSSEEEEEETT-----------------TTEEEEEEEE
T ss_pred             EeCCCCEEEEEEECCCCcEEEeeeEE-cCCCCCCceEEECC-CCCEEEEEeCC-----------------CCEEEEEEec
Confidence            876544 8888877 56655432111 11123578899999 576 8886654                 334  44555


Q ss_pred             CCCCceEEee---cC------CCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCC
Q 019290          188 PLKKNVTVMY---NG------LSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKG  258 (343)
Q Consensus       188 ~~~~~~~~~~---~~------~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G  258 (343)
                      ..+++.....   ..      ...+.++++++||+.||++....+.|.+|+++....+.....+......|.+++++++|
T Consensus       218 ~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg  297 (347)
T 3hfq_A          218 TQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTE  297 (347)
T ss_dssp             TTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTS
T ss_pred             CCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCC
Confidence            4456543221   11      13367899999999999998888999999986422211122221123358899999999


Q ss_pred             C-EEEEecc
Q 019290          259 E-FWIAMNS  266 (343)
Q Consensus       259 ~-lwi~~~~  266 (343)
                      + ||++...
T Consensus       298 ~~l~v~~~~  306 (347)
T 3hfq_A          298 AFVVVVNQN  306 (347)
T ss_dssp             SEEEEEETT
T ss_pred             CEEEEEEcC
Confidence            7 6666654

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.44  E-value=6.9e-11  Score=101.99  Aligned_cols=197  Identities=11%  Similarity=-0.006  Sum_probs=131.0

Q ss_pred             CccccccccCCCCCCCceEEEcCCCCeeEEEec---CCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCe
Q 019290           22 SSKSYQQLQLPGVVGPESLAFDCNGEGPYVGVS---DGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRP   98 (343)
Q Consensus        22 ~~~~~~~~~~~~~~~p~~l~~d~~g~~l~~~~~---~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p   98 (343)
                      +.+.+++++++....|++|+++++|. +|.++.   .+.|..+|+.+++...-...                  .....+
T Consensus         8 ~~~vv~~~p~~~~~f~~Gl~~~~dg~-Lyvstg~~~~s~v~~iD~~tg~v~~~i~l------------------~~~~fg   68 (266)
T 2iwa_A            8 IVEVLNEFPHDPYAFTQGLVYAENDT-LFESTGLYGRSSVRQVALQTGKVENIHKM------------------DDSYFG   68 (266)
T ss_dssp             EEEEEEEEECCTTCCEEEEEECSTTE-EEEEECSTTTCEEEEEETTTCCEEEEEEC------------------CTTCCE
T ss_pred             CceEEEEEECCCCCCcccEEEeCCCe-EEEECCCCCCCEEEEEECCCCCEEEEEec------------------CCCcce
Confidence            45677888888656789999999875 887653   57899999998775532110                  111234


Q ss_pred             eeEEEeCCCCeEEEEeCCCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeec
Q 019290           99 LGIKFNPVTCDLYIADAYFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATG  177 (343)
Q Consensus        99 ~gi~~~~~~~~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~  177 (343)
                      .|++++  ++.||+++...+ ++++|+++.++..-....  .  ....+++.|.  +++|+++.                
T Consensus        69 eGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g--~--~~g~glt~Dg--~~l~vs~g----------------  124 (266)
T 2iwa_A           69 EGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQ--M--KDGWGLATDG--KILYGSDG----------------  124 (266)
T ss_dssp             EEEEEE--TTEEEEEETTCSEEEEEETTTTEEEEEEECC--S--SSCCEEEECS--SSEEEECS----------------
T ss_pred             EEEEEe--CCEEEEEEecCCEEEEEECCCCcEEEEEECC--C--CCeEEEEECC--CEEEEECC----------------
Confidence            577777  579999987655 999999987765432221  1  1123455554  68999873                


Q ss_pred             CCCceEEEEeCCCCceEE-eec-----CCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecC------
Q 019290          178 DRSGRLLKYDPLKKNVTV-MYN-----GLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEM------  245 (343)
Q Consensus       178 ~~~~~v~~~d~~~~~~~~-~~~-----~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~------  245 (343)
                        .+.|+.+|+++.+... +.-     ....++.+.+. ++ .+|++....+.|.++|+.+......+.. ...      
T Consensus       125 --s~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg-~lyvn~~~~~~V~vID~~tg~V~~~I~~-~g~~~~~~~  199 (266)
T 2iwa_A          125 --TSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NG-EVWANIWQTDCIARISAKDGTLLGWILL-PNLRKKLID  199 (266)
T ss_dssp             --SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT-EEEEEETTSSEEEEEETTTCCEEEEEEC-HHHHHHHHH
T ss_pred             --CCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CC-EEEEecCCCCeEEEEECCCCcEEEEEEC-CCccccccc
Confidence              4689999998866543 221     12357888887 55 6999988889999999876322111111 000      


Q ss_pred             -----CCCCCceeeCCCC-CEEEEecc
Q 019290          246 -----PRFPDNIKSDSKG-EFWIAMNS  266 (343)
Q Consensus       246 -----~~~p~~i~~d~~G-~lwi~~~~  266 (343)
                           ...|.|+++|++| ++||+...
T Consensus       200 ~~~~~~~v~nGIa~~~~~~~lfVTgk~  226 (266)
T 2iwa_A          200 EGFRDIDVLNGIAWDQENKRIFVTGKL  226 (266)
T ss_dssp             TTCTTCCCEEEEEEETTTTEEEEEETT
T ss_pred             ccccccCceEEEEEcCCCCEEEEECCC
Confidence                 0246799999987 68888755

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.44  E-value=6.3e-11  Score=107.66  Aligned_cols=250  Identities=14%  Similarity=0.171  Sum_probs=144.4

Q ss_pred             CCCCCCCceEEEcCCCCeeEEEecCCEEEEEEcC-CCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCe
Q 019290           31 LPGVVGPESLAFDCNGEGPYVGVSDGRILKWKAA-NSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCD  109 (343)
Q Consensus        31 ~~~~~~p~~l~~d~~g~~l~~~~~~g~i~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~  109 (343)
                      .++...|..++++++|+.+|+...+ .+..|+.+ +++.......                  ...+.|.++++++ +++
T Consensus        36 ~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~------------------~~~g~~~~~~~sp-dg~   95 (365)
T 1jof_A           36 IPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASH------------------PIGGHPRANDADT-NTR   95 (365)
T ss_dssp             CCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEE------------------ECCSSGGGGCTTS-CCE
T ss_pred             cCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEe------------------ecCCCCccEEECC-CCC
Confidence            3444579999999999988877666 78888875 5544332110                  0011356677888 555


Q ss_pred             -EE--EEe-------------CCCeEEEEeCC-CCeEEEcccccCCCCccCcceeEEeCCCCe-EEEEeCCcccccccce
Q 019290          110 -LY--IAD-------------AYFGLMVVGPN-GGQAQQLASSAGGIPFRFTNDLDIDPNTGI-VYFTDSSIYFQRRQYF  171 (343)
Q Consensus       110 -l~--v~~-------------~~~gi~~~d~~-~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~-l~v~~~~~~~~~~~~~  171 (343)
                       +|  +++             ....+..++.+ +++...............++++++++ ||+ +|+++..         
T Consensus        96 ~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~sp-dG~~l~~~~~~---------  165 (365)
T 1jof_A           96 AIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDP-TETYLYSADLT---------  165 (365)
T ss_dssp             EEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETT---------
T ss_pred             EEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECC-CCCEEEEEcCC---------
Confidence             33  332             12235566654 34443221111001124688999999 575 7776654         


Q ss_pred             eeeeecCCCceEEEEeCC-CCceEEee--c---CCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCc-ccccc-ceeee
Q 019290          172 MSIATGDRSGRLLKYDPL-KKNVTVMY--N---GLSFPNGVALSNNNSFLLLAESATLKILRFWLQGE-RTTYT-PQLFA  243 (343)
Q Consensus       172 ~~~~~~~~~~~v~~~d~~-~~~~~~~~--~---~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~-~~~~~-~~~~~  243 (343)
                              .+.|+.|+.+ +++...+.  .   ....|..++++|||+.+|++...++.|.+|+++.. ..+.. ...+.
T Consensus       166 --------~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~  237 (365)
T 1jof_A          166 --------ANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFP  237 (365)
T ss_dssp             --------TTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEE
T ss_pred             --------CCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEE
Confidence                    3567777776 66654321  1   24568999999999999999877788988876531 11010 11121


Q ss_pred             cCC----C---------CCCcee-eCCCCC-EEEEeccCCC-----ccccccccccccccCCCcccCCCeEEEECCCCCE
Q 019290          244 EMP----R---------FPDNIK-SDSKGE-FWIAMNSARG-----KIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNV  303 (343)
Q Consensus       244 ~~~----~---------~p~~i~-~d~~G~-lwi~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~  303 (343)
                      ..+    +         .+.+++ +++||+ ||++... .+     .+                     .++.++.+|+.
T Consensus       238 ~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~-~~~~~~~~i---------------------~v~~~~~~g~~  295 (365)
T 1jof_A          238 LIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRA-NKFELQGYI---------------------AGFKLRDCGSI  295 (365)
T ss_dssp             SSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEE-SSTTSCCEE---------------------EEEEECTTSCE
T ss_pred             cCCCCcCCcccccccccccccEEEECCCCCEEEEECCC-CCCCCCCeE---------------------EEEEECCCCCE
Confidence            111    1         256788 999996 5666544 21     11                     45555556765


Q ss_pred             EEE---eeCCCCCccCCceeEEE---eCCEEEEecCCCCeEEEEc
Q 019290          304 VDV---LDGNEGNTLNSVSEVQE---YGEYLYTGSSVQPYVVVIK  342 (343)
Q Consensus       304 ~~~---~~~~~~~~~~~~~~~~~---~~g~l~i~~~~~~~i~~~~  342 (343)
                      ...   ...... .... ..+.+   +++.||+++..++.|.+++
T Consensus       296 ~~~~~~~~~~~~-~~~~-~a~sp~~~dg~~l~v~~~~~~~v~v~~  338 (365)
T 1jof_A          296 EKQLFLSPTPTS-GGHS-NAVSPCPWSDEWMAITDDQEGWLEIYR  338 (365)
T ss_dssp             EEEEEEEECSSC-CTTC-CCEEECTTCTTEEEEECSSSCEEEEEE
T ss_pred             EEeeeeeecCCC-Cccc-ceecCCCcCCCEEEEEEcCCCeEEEEE
Confidence            432   222111 0111 12334   5788999998888887764

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.43  E-value=2.2e-10  Score=105.87  Aligned_cols=249  Identities=11%  Similarity=0.130  Sum_probs=158.7

Q ss_pred             CceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCC
Q 019290           37 PESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAY  116 (343)
Q Consensus        37 p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~  116 (343)
                      +.++++.++|++++++..++.|..||.++++......                   .....+.+++++++++.+|++...
T Consensus       172 v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~l~~~~~~  232 (433)
T 3bws_A          172 VETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVD-------------------LTGKWSKILLYDPIRDLVYCSNWI  232 (433)
T ss_dssp             EEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEE-------------------CSSSSEEEEEEETTTTEEEEEETT
T ss_pred             eeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEc-------------------CCCCCeeEEEEcCCCCEEEEEecC
Confidence            5578898899966777788999999988765432211                   122357889999955678787644


Q ss_pred             -CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCC-eEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceE
Q 019290          117 -FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTG-IVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVT  194 (343)
Q Consensus       117 -~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg-~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~  194 (343)
                       ..|..+|+++++.......     ...+..+++++. | .+|++......          .....+.|+.+|..+++..
T Consensus       233 ~~~i~~~d~~~~~~~~~~~~-----~~~~~~~~~~~~-g~~l~~~~~~~~~----------~~~~dg~i~~~d~~~~~~~  296 (433)
T 3bws_A          233 SEDISVIDRKTKLEIRKTDK-----IGLPRGLLLSKD-GKELYIAQFSASN----------QESGGGRLGIYSMDKEKLI  296 (433)
T ss_dssp             TTEEEEEETTTTEEEEECCC-----CSEEEEEEECTT-SSEEEEEEEESCT----------TCSCCEEEEEEETTTTEEE
T ss_pred             CCcEEEEECCCCcEEEEecC-----CCCceEEEEcCC-CCEEEEEECCCCc----------cccCCCeEEEEECCCCcEE
Confidence             4599999988876543222     134788999994 6 56665432000          0002457999998877665


Q ss_pred             EeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCC-EEEEeccCCCcccc
Q 019290          195 VMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGE-FWIAMNSARGKIES  273 (343)
Q Consensus       195 ~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-lwi~~~~~~~~~~~  273 (343)
                      ........+..++++++++.+|++...++.|.+|++.+...   ...+ .....+..++++++|+ +|++.......   
T Consensus       297 ~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~---~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~~---  369 (433)
T 3bws_A          297 DTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKV---QKSI-PVFDKPNTIALSPDGKYLYVSCRGPNHP---  369 (433)
T ss_dssp             EEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEE---EEEE-ECSSSEEEEEECTTSSEEEEEECCCCCT---
T ss_pred             eeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcE---EEEe-cCCCCCCeEEEcCCCCEEEEEecCCCcc---
Confidence            44433346788999999999999988899999999875221   1122 2233467889999996 66666531100   


Q ss_pred             ccccccccccCCCcc---cCCCeEEEECC-CCCEEEEeeCCCCCccCCceeEEEe--CCEEEEecCCCCeEEEEc
Q 019290          274 NKKTAFCEETAKPWF---LRDPVGVKFDV-NGNVVDVLDGNEGNTLNSVSEVQEY--GEYLYTGSSVQPYVVVIK  342 (343)
Q Consensus       274 ~~~~~~~~~~~~~~~---~~~~~v~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~~--~g~l~i~~~~~~~i~~~~  342 (343)
                                ....+   ...+.|+.+|. +++.+..+...     ..+..+...  +..|++++...+.|.+++
T Consensus       370 ----------~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~-----~~~~~~~~s~dg~~l~~~~~~d~~i~v~~  429 (433)
T 3bws_A          370 ----------TEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG-----NQPTGLDVSPDNRYLVISDFLDHQIRVYR  429 (433)
T ss_dssp             ----------TTCTTSCCSSCCEEEEEETTTTEEEEEEECS-----SSEEEEEECTTSCEEEEEETTTTEEEEEE
T ss_pred             ----------ccccccccccceEEEEEECCCCcEEEEecCC-----CCCceEEEcCCCCEEEEEECCCCeEEEEE
Confidence                      00000   11247888987 56666666532     234444433  556788877778888775

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.41  E-value=1.1e-10  Score=107.94  Aligned_cols=232  Identities=14%  Similarity=0.115  Sum_probs=148.2

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      .|.++++++++.+++++..++.|..||..+++........              ........+.++++.+ ++.+|++..
T Consensus       124 ~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~--------------~~~~~~~~v~~~~~~~-~~~~~~s~~  188 (433)
T 3bws_A          124 QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPE--------------KYKKKLGFVETISIPE-HNELWVSQM  188 (433)
T ss_dssp             CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCH--------------HHHTTCCEEEEEEEGG-GTEEEEEEG
T ss_pred             CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcc--------------cccccCCceeEEEEcC-CCEEEEEEC
Confidence            5779999996664445556778999999887655432100              0011223467788877 788888765


Q ss_pred             CC-eEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceE
Q 019290          116 YF-GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVT  194 (343)
Q Consensus       116 ~~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~  194 (343)
                      .. .|..+|.++++.......    ....+..+++++.+..+|++...                 .+.|..+|..+++..
T Consensus       189 ~d~~v~~~d~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~-----------------~~~i~~~d~~~~~~~  247 (433)
T 3bws_A          189 QANAVHVFDLKTLAYKATVDL----TGKWSKILLYDPIRDLVYCSNWI-----------------SEDISVIDRKTKLEI  247 (433)
T ss_dssp             GGTEEEEEETTTCCEEEEEEC----SSSSEEEEEEETTTTEEEEEETT-----------------TTEEEEEETTTTEEE
T ss_pred             CCCEEEEEECCCceEEEEEcC----CCCCeeEEEEcCCCCEEEEEecC-----------------CCcEEEEECCCCcEE
Confidence            54 499999988765433221    12457889999942346665543                 467999998877765


Q ss_pred             EeecCCCCcceeEEecCCCEEEEEEc-------CCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCC-EEEEecc
Q 019290          195 VMYNGLSFPNGVALSNNNSFLLLAES-------ATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGE-FWIAMNS  266 (343)
Q Consensus       195 ~~~~~~~~~~~i~~~~d~~~lyv~~~-------~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-lwi~~~~  266 (343)
                      ........+.+++++++++.++++..       .++.|++|++.+...    .......+.+..++++++|+ +|++...
T Consensus       248 ~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~----~~~~~~~~~~~~~~~~~~g~~l~~~~~~  323 (433)
T 3bws_A          248 RKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKL----IDTIGPPGNKRHIVSGNTENKIYVSDMC  323 (433)
T ss_dssp             EECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEE----EEEEEEEECEEEEEECSSTTEEEEEETT
T ss_pred             EEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcE----EeeccCCCCcceEEECCCCCEEEEEecC
Confidence            54444456889999999998888764       356899999865221    11111223466788999985 7777655


Q ss_pred             CCCccccccccccccccCCCcccCCCeEEEECCC-CCEEEEeeCCCCCccCCceeEEEe--CCEEEEecCCCC
Q 019290          267 ARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVN-GNVVDVLDGNEGNTLNSVSEVQEY--GEYLYTGSSVQP  336 (343)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~~--~g~l~i~~~~~~  336 (343)
                                              .+.+..+|.+ ++....+...     ..+..+...  +..||+++...+
T Consensus       324 ------------------------~~~v~v~d~~~~~~~~~~~~~-----~~~~~~~~s~dg~~l~~~~~~~~  367 (433)
T 3bws_A          324 ------------------------CSKIEVYDLKEKKVQKSIPVF-----DKPNTIALSPDGKYLYVSCRGPN  367 (433)
T ss_dssp             ------------------------TTEEEEEETTTTEEEEEEECS-----SSEEEEEECTTSSEEEEEECCCC
T ss_pred             ------------------------CCEEEEEECCCCcEEEEecCC-----CCCCeEEEcCCCCEEEEEecCCC
Confidence                                    3477788875 5555555422     123333333  446888776654

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.40  E-value=3.1e-10  Score=103.41  Aligned_cols=218  Identities=17%  Similarity=0.186  Sum_probs=143.6

Q ss_pred             eEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCC-CeEEEEeCCCC
Q 019290           49 PYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAY-FGLMVVGPNGG  127 (343)
Q Consensus        49 l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~-~gi~~~d~~~~  127 (343)
                      +.++..++.|..||..+++......                    ....+.++++++++..||++... ..|..+|.+++
T Consensus         5 ~vs~~~d~~v~v~d~~~~~~~~~~~--------------------~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~   64 (391)
T 1l0q_A            5 YIANSESDNISVIDVTSNKVTATIP--------------------VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATN   64 (391)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEE--------------------CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTT
T ss_pred             EEEcCCCCEEEEEECCCCeEEEEee--------------------cCCCcceEEECCCCCEEEEECCCCCeEEEEECCCC
Confidence            4466778999999988765443221                    11247889999944567777544 44999999888


Q ss_pred             eEEEcccccCCCCccCcceeEEeCCCCe-EEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEeecCCCCccee
Q 019290          128 QAQQLASSAGGIPFRFTNDLDIDPNTGI-VYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSFPNGV  206 (343)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~i~~d~~dg~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~i  206 (343)
                      +........     ..+..+++++. ++ +|++...                 .+.|+.+|..+++..........+.++
T Consensus        65 ~~~~~~~~~-----~~v~~~~~spd-g~~l~~~~~~-----------------~~~v~v~d~~~~~~~~~~~~~~~~~~~  121 (391)
T 1l0q_A           65 NVIATVPAG-----SSPQGVAVSPD-GKQVYVTNMA-----------------SSTLSVIDTTSNTVAGTVKTGKSPLGL  121 (391)
T ss_dssp             EEEEEEECS-----SSEEEEEECTT-SSEEEEEETT-----------------TTEEEEEETTTTEEEEEEECSSSEEEE
T ss_pred             eEEEEEECC-----CCccceEECCC-CCEEEEEECC-----------------CCEEEEEECCCCeEEEEEeCCCCcceE
Confidence            765543221     25789999994 55 7776543                 467999999888776555555668899


Q ss_pred             EEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCC-EEEEeccCCCccccccccccccccCC
Q 019290          207 ALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGE-FWIAMNSARGKIESNKKTAFCEETAK  285 (343)
Q Consensus       207 ~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-lwi~~~~~~~~~~~~~~~~~~~~~~~  285 (343)
                      +++++++.+|++....+.|++|++...    +..........+..++++++|+ +|++...                   
T Consensus       122 ~~s~dg~~l~~~~~~~~~v~~~d~~~~----~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~-------------------  178 (391)
T 1l0q_A          122 ALSPDGKKLYVTNNGDKTVSVINTVTK----AVINTVSVGRSPKGIAVTPDGTKVYVANFD-------------------  178 (391)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEETTTT----EEEEEEECCSSEEEEEECTTSSEEEEEETT-------------------
T ss_pred             EECCCCCEEEEEeCCCCEEEEEECCCC----cEEEEEecCCCcceEEECCCCCEEEEEeCC-------------------
Confidence            999999999999888999999998652    2211122233467788999985 5666554                   


Q ss_pred             CcccCCCeEEEECCC-CCEEEEeeCCCCCccCCceeEEE--eCCEEEEecC--CCCeEEEEc
Q 019290          286 PWFLRDPVGVKFDVN-GNVVDVLDGNEGNTLNSVSEVQE--YGEYLYTGSS--VQPYVVVIK  342 (343)
Q Consensus       286 ~~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~--~~g~l~i~~~--~~~~i~~~~  342 (343)
                           .+.|..+|.+ ++....+....     .+..+..  ++..||+++.  ....|.+++
T Consensus       179 -----~~~v~~~d~~~~~~~~~~~~~~-----~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d  230 (391)
T 1l0q_A          179 -----SMSISVIDTVTNSVIDTVKVEA-----APSGIAVNPEGTKAYVTNVDKYFNTVSMID  230 (391)
T ss_dssp             -----TTEEEEEETTTTEEEEEEECSS-----EEEEEEECTTSSEEEEEEECSSCCEEEEEE
T ss_pred             -----CCEEEEEECCCCeEEEEEecCC-----CccceEECCCCCEEEEEecCcCCCcEEEEE
Confidence                 3467788874 44444443211     2333333  2456777775  556676665

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.39  E-value=2.4e-10  Score=109.55  Aligned_cols=249  Identities=12%  Similarity=0.084  Sum_probs=156.5

Q ss_pred             cccccCCCCCCCceEEEcCCCCeeEEEecCCEEEEEEc--CCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEE
Q 019290           26 YQQLQLPGVVGPESLAFDCNGEGPYVGVSDGRILKWKA--ANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKF  103 (343)
Q Consensus        26 ~~~~~~~~~~~p~~l~~d~~g~~l~~~~~~g~i~~~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~  103 (343)
                      +..+..+.  .|++++++++|+.+|++..++.|..||.  .+.+...-.                    .....|.++++
T Consensus       172 ~~~i~~g~--~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i--------------------~~g~~p~~va~  229 (543)
T 1nir_A          172 VKVIDTGY--AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEI--------------------KIGIEARSVES  229 (543)
T ss_dssp             EEEEECST--TEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEE--------------------ECCSEEEEEEE
T ss_pred             EEEEecCc--ccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEE--------------------ecCCCcceEEe
Confidence            44554443  3899999999999998888899999999  554322110                    12235889999


Q ss_pred             eC----CCCeEEEEeCC-CeEEEEeCCCCeEEEcccccC----C---CCccCcceeEEeCCCCeEEEEeCCcccccccce
Q 019290          104 NP----VTCDLYIADAY-FGLMVVGPNGGQAQQLASSAG----G---IPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYF  171 (343)
Q Consensus       104 ~~----~~~~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~----~---~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~  171 (343)
                      ++    +++.||+++.. ..|..+|.++++.........    .   .+...+..+++++.++.++++...         
T Consensus       230 sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~---------  300 (543)
T 1nir_A          230 SKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE---------  300 (543)
T ss_dssp             CCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT---------
T ss_pred             CCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECC---------
Confidence            98    78899999743 558899998876544322210    0   112356788888843456665543         


Q ss_pred             eeeeecCCCceEEEEeCCCCceEE--eecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCC--
Q 019290          172 MSIATGDRSGRLLKYDPLKKNVTV--MYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPR--  247 (343)
Q Consensus       172 ~~~~~~~~~~~v~~~d~~~~~~~~--~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--  247 (343)
                              .+.|+.+|..+.+...  .......+.+++++|+++++|++....+.|.++|..+...   ...+ ....  
T Consensus       301 --------~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l---~~~i-~~g~~p  368 (543)
T 1nir_A          301 --------TGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRL---SALV-DVGKTP  368 (543)
T ss_dssp             --------TTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEE---EEEE-ECSSSB
T ss_pred             --------CCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeE---EEee-ccCCCC
Confidence                    5789999876543211  1233466889999999999999988889999999875221   1111 1111  


Q ss_pred             CC-Ccee-eCCC-CCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECCC--------CCEEEEeeCCCCCccC
Q 019290          248 FP-DNIK-SDSK-GEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVN--------GNVVDVLDGNEGNTLN  316 (343)
Q Consensus       248 ~p-~~i~-~d~~-G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~--------g~~~~~~~~~~~~~~~  316 (343)
                      +| .+.. .+++ |.+|++....                       .+.|..+|.+        ++.+..+..+.+  ..
T Consensus       369 h~g~g~~~~~p~~g~~~~s~~~~-----------------------d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~--~~  423 (543)
T 1nir_A          369 HPGRGANFVHPKYGPVWSTSHLG-----------------------DGSISLIGTDPKNHPQYAWKKVAELQGQGG--GS  423 (543)
T ss_dssp             CCTTCEEEEETTTEEEEEEEBSS-----------------------SSEEEEEECCTTTCTTTBTSEEEEEECSCS--CC
T ss_pred             CCCCCcccCCCCCccEEEeccCC-----------------------CceEEEEEeCCCCCchhcCeEEEEEEcCCC--Cc
Confidence            23 2333 4676 7899887531                       1255555542        577777764332  11


Q ss_pred             CceeEEEeCCEEEEecC-C-----CCeEEEEc
Q 019290          317 SVSEVQEYGEYLYTGSS-V-----QPYVVVIK  342 (343)
Q Consensus       317 ~~~~~~~~~g~l~i~~~-~-----~~~i~~~~  342 (343)
                      .+....+++.+||+++. +     +++|.+++
T Consensus       424 ~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d  455 (543)
T 1nir_A          424 LFIKTHPKSSHLYVDTTFNPDARISQSVAVFD  455 (543)
T ss_dssp             CCEECCTTCCEEEECCTTCSSHHHHTCEEEEE
T ss_pred             eEEEcCCCCCcEEEecCCCCCcccCceEEEEE
Confidence            12222345788999873 2     44788876

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.38  E-value=6.4e-10  Score=106.59  Aligned_cols=234  Identities=9%  Similarity=-0.032  Sum_probs=153.7

Q ss_pred             EEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCCCeEE
Q 019290           41 AFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFGLM  120 (343)
Q Consensus        41 ~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~~gi~  120 (343)
                      ++++++.++.+...++.|..+|..+++......                   . ...+++++++++++.||+++..+.|.
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~-------------------~-g~~~~~v~~spdg~~l~v~~~d~~V~  203 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVID-------------------T-GYAVHISRMSASGRYLLVIGRDARID  203 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEE-------------------C-STTEEEEEECTTSCEEEEEETTSEEE
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEe-------------------c-CcccceEEECCCCCEEEEECCCCeEE
Confidence            478888755566778899999998876542211                   1 11278999999667899998766699


Q ss_pred             EEeC--CCCeEEEcccccCCCCccCcceeEEeC----CCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceE
Q 019290          121 VVGP--NGGQAQQLASSAGGIPFRFTNDLDIDP----NTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVT  194 (343)
Q Consensus       121 ~~d~--~~~~~~~~~~~~~~~~~~~~~~i~~d~----~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~  194 (343)
                      .+|.  ++++......  .+   ..+.++++++    ++..+|+++..                 .+.|..+|..+++..
T Consensus       204 v~D~~~~t~~~~~~i~--~g---~~p~~va~sp~~~~dg~~l~v~~~~-----------------~~~v~v~D~~t~~~~  261 (543)
T 1nir_A          204 MIDLWAKEPTKVAEIK--IG---IEARSVESSKFKGYEDRYTIAGAYW-----------------PPQFAIMDGETLEPK  261 (543)
T ss_dssp             EEETTSSSCEEEEEEE--CC---SEEEEEEECCSTTCTTTEEEEEEEE-----------------SSEEEEEETTTCCEE
T ss_pred             EEECcCCCCcEEEEEe--cC---CCcceEEeCCCcCCCCCEEEEEEcc-----------------CCeEEEEeccccccc
Confidence            9999  6665433222  11   3578999998    64568886642                 456888888777654


Q ss_pred             EeecC------------CCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCC-EE
Q 019290          195 VMYNG------------LSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGE-FW  261 (343)
Q Consensus       195 ~~~~~------------~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-lw  261 (343)
                      .....            ...+.++++++++..+|++....+.|+.++...... .....+ .....|.++.++++|+ ++
T Consensus       262 ~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~-l~~~~i-~~~~~~~~~~~spdg~~l~  339 (543)
T 1nir_A          262 QIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDN-LTVTSI-GAAPFLHDGGWDSSHRYFM  339 (543)
T ss_dssp             EEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSS-CEEEEE-ECCSSCCCEEECTTSCEEE
T ss_pred             eeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCc-ceeEEe-ccCcCccCceECCCCCEEE
Confidence            33221            124568899999999999998899999999875322 111122 2344688999999998 55


Q ss_pred             EEeccCCCccccccccccccccCCCcccCCCeEEEECC-CCCEEEEeeCCCCCcc-CCceeEEEeCCEEEEecC-CCCeE
Q 019290          262 IAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDV-NGNVVDVLDGNEGNTL-NSVSEVQEYGEYLYTGSS-VQPYV  338 (343)
Q Consensus       262 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~~~~~~~~-~~~~~~~~~~g~l~i~~~-~~~~i  338 (343)
                      ++...                        .+.|..+|. +++.+..+........ .......++.+.+|+++. ..+.|
T Consensus       340 va~~~------------------------~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V  395 (543)
T 1nir_A          340 TAANN------------------------SNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSI  395 (543)
T ss_dssp             EEEGG------------------------GTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEE
T ss_pred             EEecC------------------------CCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceE
Confidence            66554                        346777987 5776666653222111 112222223588998875 56788


Q ss_pred             EEEc
Q 019290          339 VVIK  342 (343)
Q Consensus       339 ~~~~  342 (343)
                      .+++
T Consensus       396 ~v~d  399 (543)
T 1nir_A          396 SLIG  399 (543)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8775

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.37  E-value=8.6e-10  Score=96.36  Aligned_cols=217  Identities=12%  Similarity=0.084  Sum_probs=142.8

Q ss_pred             CCCeeEEEecCCEEEEEEcCCCCeE-EeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCCCeEEEEe
Q 019290           45 NGEGPYVGVSDGRILKWKAANSGWT-EFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFGLMVVG  123 (343)
Q Consensus        45 ~g~~l~~~~~~g~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~~gi~~~d  123 (343)
                      .|++++++..+++|+.+|+++++.. .+..                   .....++++.+.+ +++++++ ...+|+.+|
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~-------------------~~~~~~~~~~~~p-dG~ilvs-~~~~V~~~d   62 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPL-------------------EKGWECNSVAATK-AGEILFS-YSKGAKMIT   62 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEEC-------------------CTTCCCCEEEECT-TSCEEEE-CBSEEEEEC
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCC-------------------CccCCCcCeEECC-CCCEEEe-CCCCEEEEC
Confidence            3566788888999999999676543 2210                   1112467889998 8888885 567899999


Q ss_pred             CCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEee--cC--
Q 019290          124 PNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMY--NG--  199 (343)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~--~~--  199 (343)
                      + +|+...-......   ..++++.+.+ +|++++++...                .++|+.+|++++.+..+.  ..  
T Consensus        63 ~-~G~~~W~~~~~~~---~~~~~~~~~~-dG~~lv~~~~~----------------~~~v~~vd~~Gk~l~~~~~~~~~~  121 (276)
T 3no2_A           63 R-DGRELWNIAAPAG---CEMQTARILP-DGNALVAWCGH----------------PSTILEVNMKGEVLSKTEFETGIE  121 (276)
T ss_dssp             T-TSCEEEEEECCTT---CEEEEEEECT-TSCEEEEEEST----------------TEEEEEECTTSCEEEEEEECCSCS
T ss_pred             C-CCCEEEEEcCCCC---ccccccEECC-CCCEEEEecCC----------------CCEEEEEeCCCCEEEEEeccCCCC
Confidence            9 5765543332111   2356778888 59999876430                356888887644333322  11  


Q ss_pred             --CCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEeccCCCcccccccc
Q 019290          200 --LSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNSARGKIESNKKT  277 (343)
Q Consensus       200 --~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~~~~~~~~~~~~~  277 (343)
                        ...+..+++.++|+. +++...+++|..++.++.    ..-.+ ...+.|.+...+++|++++++..           
T Consensus       122 ~~~~~~~~v~~~~~G~~-lv~~~~~~~v~~~d~~G~----~~w~~-~~~~~~~~~~~~~~g~~~v~~~~-----------  184 (276)
T 3no2_A          122 RPHAQFRQINKNKKGNY-LVPLFATSEVREIAPNGQ----LLNSV-KLSGTPFSSAFLDNGDCLVACGD-----------  184 (276)
T ss_dssp             SGGGSCSCCEECTTSCE-EEEETTTTEEEEECTTSC----EEEEE-ECSSCCCEEEECTTSCEEEECBT-----------
T ss_pred             cccccccCceECCCCCE-EEEecCCCEEEEECCCCC----EEEEE-ECCCCccceeEcCCCCEEEEeCC-----------
Confidence              123567788888874 566777899999998752    21222 23345778888999999999876           


Q ss_pred             ccccccCCCcccCCCeEEEECCC-CCEEEEeeCC--CCCccCCceeEEEe-CCEEEEecC
Q 019290          278 AFCEETAKPWFLRDPVGVKFDVN-GNVVDVLDGN--EGNTLNSVSEVQEY-GEYLYTGSS  333 (343)
Q Consensus       278 ~~~~~~~~~~~~~~~~v~~~d~~-g~~~~~~~~~--~~~~~~~~~~~~~~-~g~l~i~~~  333 (343)
                                   .+.|+.+|++ |+.+-.+...  ++.....++.+... +|++|+++.
T Consensus       185 -------------~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~  231 (276)
T 3no2_A          185 -------------AHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW  231 (276)
T ss_dssp             -------------TSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred             -------------CCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence                         3478999997 9988777532  22123345555444 899999985

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.36  E-value=1.2e-10  Score=103.20  Aligned_cols=187  Identities=13%  Similarity=0.070  Sum_probs=123.5

Q ss_pred             CCceEEEcCCCCeeEEEe-cC--CEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEE
Q 019290           36 GPESLAFDCNGEGPYVGV-SD--GRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYI  112 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~-~~--g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v  112 (343)
                      .|.+|+++++|+ +|++. ..  .+|++++..++++..+...                  .....+.+++..+ ++.+|+
T Consensus        73 ~p~gia~~~dG~-l~vad~~~~~~~v~~~d~~~g~~~~~~~~------------------~~~~~~~g~~~~~-~~~~~v  132 (306)
T 2p4o_A           73 KVSGLAFTSNGD-LVATGWNADSIPVVSLVKSDGTVETLLTL------------------PDAIFLNGITPLS-DTQYLT  132 (306)
T ss_dssp             EEEEEEECTTSC-EEEEEECTTSCEEEEEECTTSCEEEEEEC------------------TTCSCEEEEEESS-SSEEEE
T ss_pred             CceeEEEcCCCc-EEEEeccCCcceEEEEcCCCCeEEEEEeC------------------CCccccCcccccC-CCcEEE
Confidence            699999999999 56443 32  3699999888777665421                  1123467887776 788999


Q ss_pred             EeCC-CeEEEEeCCCCeEEEc--ccc----cCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEE
Q 019290          113 ADAY-FGLMVVGPNGGQAQQL--ASS----AGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLK  185 (343)
Q Consensus       113 ~~~~-~gi~~~d~~~~~~~~~--~~~----~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~  185 (343)
                      ++.. ..|+++|+.+++.+..  ...    .....+..++++..|  ++.+|+++..                 .++|++
T Consensus       133 ~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~d--g~~lyv~d~~-----------------~~~I~~  193 (306)
T 2p4o_A          133 ADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF--GNFLYVSNTE-----------------KMLLLR  193 (306)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE--TTEEEEEETT-----------------TTEEEE
T ss_pred             EECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCcCcC--CCEEEEEeCC-----------------CCEEEE
Confidence            9864 4599999986543221  110    111223567888333  2589999876                 568999


Q ss_pred             EeCCC-Cce---EEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCC-CCCCceeeC---CC
Q 019290          186 YDPLK-KNV---TVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMP-RFPDNIKSD---SK  257 (343)
Q Consensus       186 ~d~~~-~~~---~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~p~~i~~d---~~  257 (343)
                      ++.+. ++.   +.+ ..+..|.+++++++|. +|+++...++|.+++.++...  ....+ ..+ ..|.+++++   ++
T Consensus       194 ~~~~~~g~~~~~~~~-~~~~~P~gi~vd~dG~-l~va~~~~~~V~~~~~~G~~~--~~~~~-~~~~~~p~~~a~~g~~~d  268 (306)
T 2p4o_A          194 IPVDSTDKPGEPEIF-VEQTNIDDFAFDVEGN-LYGATHIYNSVVRIAPDRSTT--IIAQA-EQGVIGSTAVAFGQTEGD  268 (306)
T ss_dssp             EEBCTTSCBCCCEEE-EESCCCSSEEEBTTCC-EEEECBTTCCEEEECTTCCEE--EEECG-GGTCTTEEEEEECCSTTT
T ss_pred             EEeCCCCCCCccEEE-eccCCCCCeEECCCCC-EEEEeCCCCeEEEECCCCCEE--EEeec-ccccCCceEEEEecccCC
Confidence            98763 332   222 2246799999999985 899998889999998764211  11111 122 348889997   67


Q ss_pred             -CCEEEEecc
Q 019290          258 -GEFWIAMNS  266 (343)
Q Consensus       258 -G~lwi~~~~  266 (343)
                       +.|||++..
T Consensus       269 ~~~LyVt~~~  278 (306)
T 2p4o_A          269 CTAIYVVTNG  278 (306)
T ss_dssp             TTEEEEEECT
T ss_pred             CCEEEEECCC
Confidence             579999875

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.35  E-value=7.2e-10  Score=98.39  Aligned_cols=244  Identities=12%  Similarity=0.018  Sum_probs=147.8

Q ss_pred             cccccccCCCCC-CCceEEEcCCCCeeEE-EecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeE
Q 019290           24 KSYQQLQLPGVV-GPESLAFDCNGEGPYV-GVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGI  101 (343)
Q Consensus        24 ~~~~~~~~~~~~-~p~~l~~d~~g~~l~~-~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi  101 (343)
                      +..+++.++... .|.+++++++|+.+|+ ...++.|+.+|..+++......... .             ......|.++
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~-~-------------~~~~~~~~~~   87 (337)
T 1pby_B           22 AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLST-P-------------EERVKSLFGA   87 (337)
T ss_dssp             EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCB-T-------------TEEEECTTCE
T ss_pred             cEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCC-c-------------ccccccccce
Confidence            345556666433 4899999999986665 4557899999998766443211000 0             0001146789


Q ss_pred             EEeCCCCeEEEEe------------CCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCe-EEEEeCCcccccc
Q 019290          102 KFNPVTCDLYIAD------------AYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGI-VYFTDSSIYFQRR  168 (343)
Q Consensus       102 ~~~~~~~~l~v~~------------~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~-l~v~~~~~~~~~~  168 (343)
                      +++++++.||++.            ....|+.+|.++++.......  +   ..+.++++++ ||+ +|+++        
T Consensus        88 ~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~--~---~~~~~~~~s~-dg~~l~~~~--------  153 (337)
T 1pby_B           88 ALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA--P---RQITMLAWAR-DGSKLYGLG--------  153 (337)
T ss_dssp             EECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC--C---SSCCCEEECT-TSSCEEEES--------
T ss_pred             EECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC--C---CCcceeEECC-CCCEEEEeC--------
Confidence            9998555888885            235699999998876543322  1   3477899999 466 77752        


Q ss_pred             cceeeeeecCCCceEEEEeCCCCceEEeecCCCCcceeEEecCCCEEEEEEcCCC-----------------------eE
Q 019290          169 QYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESATL-----------------------KI  225 (343)
Q Consensus       169 ~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~-----------------------~i  225 (343)
                                  +.|+.+|..+++.............++++++++.+|++....+                       .|
T Consensus       154 ------------~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  221 (337)
T 1pby_B          154 ------------RDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGL  221 (337)
T ss_dssp             ------------SSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEE
T ss_pred             ------------CeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccce
Confidence                        3588999887776543332222334467888887777654443                       46


Q ss_pred             EEEEccCccccccceeeecCCCCCCceeeCCCCC-EEEEeccCCCccccccccccccccCCCcccCCCeEEEECCC-CCE
Q 019290          226 LRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGE-FWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVN-GNV  303 (343)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~-g~~  303 (343)
                      +++++.+... . ...+......+.+++++++|+ +|++ ..                          .|..+|.+ ++.
T Consensus       222 ~~~d~~~~~~-~-~~~~~~~~~~~~~~~~s~dg~~l~~~-~~--------------------------~v~~~d~~~~~~  272 (337)
T 1pby_B          222 LTMDLETGEM-A-MREVRIMDVFYFSTAVNPAKTRAFGA-YN--------------------------VLESFDLEKNAS  272 (337)
T ss_dssp             EEEETTTCCE-E-EEEEEECSSCEEEEEECTTSSEEEEE-ES--------------------------EEEEEETTTTEE
T ss_pred             EEEeCCCCCc-e-EeecCCCCCceeeEEECCCCCEEEEe-CC--------------------------eEEEEECCCCcC
Confidence            7788765222 1 111111223466789999996 5555 33                          77888875 555


Q ss_pred             EEEeeCCCCCccCCceeEEE--eCCEEEEecCCCCeEEEEc
Q 019290          304 VDVLDGNEGNTLNSVSEVQE--YGEYLYTGSSVQPYVVVIK  342 (343)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~--~~g~l~i~~~~~~~i~~~~  342 (343)
                      ...+..+.     .+..+..  ++..||+++ ..+.|.+++
T Consensus       273 ~~~~~~~~-----~~~~~~~s~dg~~l~~~~-~~~~i~v~d  307 (337)
T 1pby_B          273 IKRVPLPH-----SYYSVNVSTDGSTVWLGG-ALGDLAAYD  307 (337)
T ss_dssp             EEEEECSS-----CCCEEEECTTSCEEEEES-BSSEEEEEE
T ss_pred             cceecCCC-----ceeeEEECCCCCEEEEEc-CCCcEEEEE
Confidence            55554322     2233333  345688874 467787776

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.34  E-value=2.2e-09  Score=93.69  Aligned_cols=235  Identities=14%  Similarity=0.100  Sum_probs=143.3

Q ss_pred             cccccCCCCCCCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeC
Q 019290           26 YQQLQLPGVVGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNP  105 (343)
Q Consensus        26 ~~~~~~~~~~~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~  105 (343)
                      .-++..++...++++++.++|++++  ..+++|+.+|++++..-.+..                   .....+.+..+.+
T Consensus        28 ~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~~G~~~W~~~~-------------------~~~~~~~~~~~~~   86 (276)
T 3no2_A           28 VWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITRDGRELWNIAA-------------------PAGCEMQTARILP   86 (276)
T ss_dssp             EEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECTTSCEEEEEEC-------------------CTTCEEEEEEECT
T ss_pred             EEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECCCCCEEEEEcC-------------------CCCccccccEECC
Confidence            3444444334689999999999444  457789999995443334421                   1112345677777


Q ss_pred             CCCeEEEEeCC-Ce-EEEEeCCCCeEEEcccccC-CCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCce
Q 019290          106 VTCDLYIADAY-FG-LMVVGPNGGQAQQLASSAG-GIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGR  182 (343)
Q Consensus       106 ~~~~l~v~~~~-~g-i~~~d~~~~~~~~~~~~~~-~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~  182 (343)
                       ++++++++.. ++ ++.+|+++..+..+..... ..+...+..+++++ +|++++++..                 .+.
T Consensus        87 -dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~-~G~~lv~~~~-----------------~~~  147 (276)
T 3no2_A           87 -DGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNK-KGNYLVPLFA-----------------TSE  147 (276)
T ss_dssp             -TSCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECT-TSCEEEEETT-----------------TTE
T ss_pred             -CCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECC-CCCEEEEecC-----------------CCE
Confidence             7888887655 44 8899986443333321111 11224567788888 5999998765                 568


Q ss_pred             EEEEeCCCCceEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeec--CC----CCCCceeeCC
Q 019290          183 LLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAE--MP----RFPDNIKSDS  256 (343)
Q Consensus       183 v~~~d~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~----~~p~~i~~d~  256 (343)
                      |+.+|++ |+...-......+.++.+.+++. ++++...+++|..++.++..   ..-.+..  .+    ..|.++.+++
T Consensus       148 v~~~d~~-G~~~w~~~~~~~~~~~~~~~~g~-~~v~~~~~~~v~~~d~~tG~---~~w~~~~~~~~~~~l~~~~~~~~~~  222 (276)
T 3no2_A          148 VREIAPN-GQLLNSVKLSGTPFSSAFLDNGD-CLVACGDAHCFVQLNLESNR---IVRRVNANDIEGVQLFFVAQLFPLQ  222 (276)
T ss_dssp             EEEECTT-SCEEEEEECSSCCCEEEECTTSC-EEEECBTTSEEEEECTTTCC---EEEEEEGGGSBSCCCSEEEEEEECT
T ss_pred             EEEECCC-CCEEEEEECCCCccceeEcCCCC-EEEEeCCCCeEEEEeCcCCc---EEEEecCCCCCCccccccccceEcC
Confidence            9999998 65543232234577788888876 55666677899999987311   1112211  11    1266788899


Q ss_pred             CCCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECCCCCEEEEeeCCCCCccCCceeE
Q 019290          257 KGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEGNTLNSVSEV  321 (343)
Q Consensus       257 ~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~~~~~~~~~~~  321 (343)
                      +|++++++........ .      .       .....++++|++|+++=.+....  .+..++.+
T Consensus       223 ~G~i~v~~~~g~~~~~-~------~-------~~~~~~~~~~~~g~~~W~~~~~~--~~~~~~~~  271 (276)
T 3no2_A          223 NGGLYICNWQGHDREA-G------K-------GKHPQLVEIDSEGKVVWQLNDKV--KFGMISTI  271 (276)
T ss_dssp             TSCEEEEEECTTCTTG-G------G-------SCCCSEEEECTTSBEEEEECCTT--TSCCCCEE
T ss_pred             CCCEEEEeccCccccc-c------c-------cCCceEEEECCCCCEEEEecCcc--cccceeee
Confidence            9999999863111000 0      0       00236889999999987775432  34445443

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.34  E-value=1.1e-10  Score=104.50  Aligned_cols=183  Identities=14%  Similarity=0.125  Sum_probs=122.5

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      .|.+++++++|+ +|++. ..+|+++|+.++++..+.....               ......++++++++ ++++|+++.
T Consensus        91 ~v~~i~~~~dg~-l~v~~-~~gl~~~d~~~g~~~~~~~~~~---------------~~~~~~~~~i~~d~-~G~l~v~~~  152 (326)
T 2ghs_A           91 MGSALAKISDSK-QLIAS-DDGLFLRDTATGVLTLHAELES---------------DLPGNRSNDGRMHP-SGALWIGTM  152 (326)
T ss_dssp             CEEEEEEEETTE-EEEEE-TTEEEEEETTTCCEEEEECSST---------------TCTTEEEEEEEECT-TSCEEEEEE
T ss_pred             cceEEEEeCCCe-EEEEE-CCCEEEEECCCCcEEEEeeCCC---------------CCCCCCCCCEEECC-CCCEEEEeC
Confidence            688999999999 66655 4569999998887766532110               01123578899998 889999864


Q ss_pred             C-------CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCC-eEEEEeCCcccccccceeeeeecCCCceEEEEe
Q 019290          116 Y-------FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTG-IVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYD  187 (343)
Q Consensus       116 ~-------~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg-~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d  187 (343)
                      .       .+|++++  +++++.+...     ...++++++++ || .+|+++..                 .+.|++++
T Consensus       153 ~~~~~~~~~~l~~~~--~g~~~~~~~~-----~~~~~~i~~s~-dg~~lyv~~~~-----------------~~~I~~~d  207 (326)
T 2ghs_A          153 GRKAETGAGSIYHVA--KGKVTKLFAD-----ISIPNSICFSP-DGTTGYFVDTK-----------------VNRLMRVP  207 (326)
T ss_dssp             ETTCCTTCEEEEEEE--TTEEEEEEEE-----ESSEEEEEECT-TSCEEEEEETT-----------------TCEEEEEE
T ss_pred             CCcCCCCceEEEEEe--CCcEEEeeCC-----CcccCCeEEcC-CCCEEEEEECC-----------------CCEEEEEE
Confidence            2       4699999  4666654321     23578999999 46 58998754                 46799998


Q ss_pred             CC--CC-ce---EEee---cCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeC-CC
Q 019290          188 PL--KK-NV---TVMY---NGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSD-SK  257 (343)
Q Consensus       188 ~~--~~-~~---~~~~---~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d-~~  257 (343)
                      .+  ++ ..   +.+.   .....+.+++++++|. +|++....++|++|+.++.    ....+......|.+++++ ++
T Consensus       208 ~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~-lwva~~~~~~v~~~d~~g~----~~~~i~~~~~~~~~~af~g~d  282 (326)
T 2ghs_A          208 LDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGH-IWNARWGEGAVDRYDTDGN----HIARYEVPGKQTTCPAFIGPD  282 (326)
T ss_dssp             BCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSC-EEEEEETTTEEEEECTTCC----EEEEEECSCSBEEEEEEESTT
T ss_pred             cccccCCcccCceEEEECCCCCCCCCeeEECCCCC-EEEEEeCCCEEEEECCCCC----EEEEEECCCCCcEEEEEecCC
Confidence            64  45 32   1221   1234578999998885 8888777789999997542    222222111236678886 66


Q ss_pred             C-CEEEEecc
Q 019290          258 G-EFWIAMNS  266 (343)
Q Consensus       258 G-~lwi~~~~  266 (343)
                      + .||+++..
T Consensus       283 ~~~L~vt~~~  292 (326)
T 2ghs_A          283 ASRLLVTSAR  292 (326)
T ss_dssp             SCEEEEEEBC
T ss_pred             CCEEEEEecC
Confidence            5 69999876

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.33  E-value=1.3e-09  Score=96.98  Aligned_cols=193  Identities=9%  Similarity=0.100  Sum_probs=120.5

Q ss_pred             CCceEEEcCCCCeeEEEe-cCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEe
Q 019290           36 GPESLAFDCNGEGPYVGV-SDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIAD  114 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~-~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~  114 (343)
                      .|.+++++++|+.+|++. .++.|..||..++........                 ......+.+++++++++.+|+++
T Consensus        85 ~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-----------------~~~~~~~~~~~~s~dg~~l~~~~  147 (343)
T 1ri6_A           85 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDV-----------------VEGLDGCHSANISPDNRTLWVPA  147 (343)
T ss_dssp             CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEE-----------------ECCCTTBCCCEECTTSSEEEEEE
T ss_pred             CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccc-----------------ccCCCCceEEEECCCCCEEEEec
Confidence            799999999999777654 477899888742221111100                 01223477899999555788886


Q ss_pred             C-CCeEEEEeCCC-CeEEEcc--cccCCCCccCcceeEEeCCCCe-EEEEeCCcccccccceeeeeecCCCceEEEEeC-
Q 019290          115 A-YFGLMVVGPNG-GQAQQLA--SSAGGIPFRFTNDLDIDPNTGI-VYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDP-  188 (343)
Q Consensus       115 ~-~~gi~~~d~~~-~~~~~~~--~~~~~~~~~~~~~i~~d~~dg~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~-  188 (343)
                      . ...|..++.++ ++.....  .... .....+..+++++ +|+ +|++...                 .+.|..++. 
T Consensus       148 ~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p-dg~~l~~~~~~-----------------~~~i~~~~~~  208 (343)
T 1ri6_A          148 LKQDRICLFTVSDDGHLVAQDPAEVTT-VEGAGPRHMVFHP-NEQYAYCVNEL-----------------NSSVDVWELK  208 (343)
T ss_dssp             GGGTEEEEEEECTTSCEEEEEEEEEEC-STTCCEEEEEECT-TSSEEEEEETT-----------------TTEEEEEESS
T ss_pred             CCCCEEEEEEecCCCceeeeccccccc-CCCCCcceEEECC-CCCEEEEEeCC-----------------CCEEEEEEec
Confidence            3 34588998876 6654322  1111 1123577899999 465 7776643                 456777776 


Q ss_pred             -CCCceEEe--ec----C---CCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeee--cCCCCCCceeeCC
Q 019290          189 -LKKNVTVM--YN----G---LSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFA--EMPRFPDNIKSDS  256 (343)
Q Consensus       189 -~~~~~~~~--~~----~---~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~p~~i~~d~  256 (343)
                       .+++....  ..    .   ...+.+++++++++.||++....+.|.+|+++...  +..+.+.  ...+.|.++++++
T Consensus       209 ~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~s~  286 (343)
T 1ri6_A          209 DPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDG--SVLSKEGFQPTETQPRGFNVDH  286 (343)
T ss_dssp             CTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTS--CCEEEEEEEECSSSCCCEEECT
T ss_pred             CCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCC--CceEEeeeecCCCccceEEECC
Confidence             33443211  11    1   12345799999999999988788999999987311  1122221  2233488999999


Q ss_pred             CCC-EEEEecc
Q 019290          257 KGE-FWIAMNS  266 (343)
Q Consensus       257 ~G~-lwi~~~~  266 (343)
                      +|+ +|++...
T Consensus       287 dg~~l~~~~~~  297 (343)
T 1ri6_A          287 SGKYLIAAGQK  297 (343)
T ss_dssp             TSSEEEEECTT
T ss_pred             CCCEEEEecCC
Confidence            997 5666543

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.28  E-value=1.2e-08  Score=90.23  Aligned_cols=234  Identities=10%  Similarity=0.006  Sum_probs=147.2

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      ...++++.++++.++++..++.|..||..+++.......                 ......+..+++++++..++++..
T Consensus        99 ~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~-----------------~~~~~~i~~~~~~~~~~~l~~~~~  161 (337)
T 1gxr_A           99 YIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAEL-----------------TSSAPACYALAISPDSKVCFSCCS  161 (337)
T ss_dssp             BEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEE-----------------ECSSSCEEEEEECTTSSEEEEEET
T ss_pred             cEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeec-----------------ccCCCceEEEEECCCCCEEEEEeC
Confidence            467899999999888888999999999887653222110                 112234678899984456666654


Q ss_pred             CCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEE
Q 019290          116 YFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTV  195 (343)
Q Consensus       116 ~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~  195 (343)
                      ...+..+|.++++........    ...+..+++.+ ++..+++...                 .+.|..||..+++...
T Consensus       162 dg~v~~~d~~~~~~~~~~~~~----~~~i~~~~~~~-~~~~l~~~~~-----------------dg~i~~~d~~~~~~~~  219 (337)
T 1gxr_A          162 DGNIAVWDLHNQTLVRQFQGH----TDGASCIDISN-DGTKLWTGGL-----------------DNTVRSWDLREGRQLQ  219 (337)
T ss_dssp             TSCEEEEETTTTEEEEEECCC----SSCEEEEEECT-TSSEEEEEET-----------------TSEEEEEETTTTEEEE
T ss_pred             CCcEEEEeCCCCceeeeeecc----cCceEEEEECC-CCCEEEEEec-----------------CCcEEEEECCCCceEe
Confidence            445999999887654432221    13578899999 4765554322                 4678899988776554


Q ss_pred             eecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEeccCCCcccccc
Q 019290          196 MYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNSARGKIESNK  275 (343)
Q Consensus       196 ~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~~~~~~~~~~~  275 (343)
                      ..........++++++++.+++.. .++.|..|++....    ...+.........++++++|+++++...         
T Consensus       220 ~~~~~~~v~~~~~s~~~~~l~~~~-~~~~i~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------  285 (337)
T 1gxr_A          220 QHDFTSQIFSLGYCPTGEWLAVGM-ESSNVEVLHVNKPD----KYQLHLHESCVLSLKFAYCGKWFVSTGK---------  285 (337)
T ss_dssp             EEECSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTSSC----EEEECCCSSCEEEEEECTTSSEEEEEET---------
T ss_pred             eecCCCceEEEEECCCCCEEEEEc-CCCcEEEEECCCCC----eEEEcCCccceeEEEECCCCCEEEEecC---------
Confidence            444445578899999998776654 57889999987632    2222222233456788999987776655         


Q ss_pred             ccccccccCCCcccCCCeEEEECC-CCCEEEEeeCCCCCccCCceeEEEe-CCEEEEecCCCCeEEEEc
Q 019290          276 KTAFCEETAKPWFLRDPVGVKFDV-NGNVVDVLDGNEGNTLNSVSEVQEY-GEYLYTGSSVQPYVVVIK  342 (343)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~~~~i~~~~  342 (343)
                                     .+.+..++. .++........     ..+..+... +++++++......|.+++
T Consensus       286 ---------------dg~i~~~~~~~~~~~~~~~~~-----~~v~~~~~s~~~~~l~~~~~dg~i~iw~  334 (337)
T 1gxr_A          286 ---------------DNLLNAWRTPYGASIFQSKES-----SSVLSCDISVDDKYIVTGSGDKKATVYE  334 (337)
T ss_dssp             ---------------TSEEEEEETTTCCEEEEEECS-----SCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred             ---------------CCcEEEEECCCCeEEEEecCC-----CcEEEEEECCCCCEEEEecCCCeEEEEE
Confidence                           346777775 45555433321     234444433 455555555556666654

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=99.28  E-value=5.7e-10  Score=101.02  Aligned_cols=216  Identities=15%  Similarity=0.137  Sum_probs=125.8

Q ss_pred             cCCeeeEEEeCCCCeEEEEeCCCeEEEEeCCCCeEEEccccc-CCCCccCcceeEEeCC---CCeEEEEeCCcccccccc
Q 019290           95 CGRPLGIKFNPVTCDLYIADAYFGLMVVGPNGGQAQQLASSA-GGIPFRFTNDLDIDPN---TGIVYFTDSSIYFQRRQY  170 (343)
Q Consensus        95 ~~~p~gi~~~~~~~~l~v~~~~~gi~~~d~~~~~~~~~~~~~-~~~~~~~~~~i~~d~~---dg~l~v~~~~~~~~~~~~  170 (343)
                      ...|.+|++++ +++|||++....|++++  +++.+.+.... .......+++|++++.   ++.+|+++....      
T Consensus        30 l~~P~~ia~~p-dG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~------  100 (352)
T 2ism_A           30 LEVPWALAFLP-DGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAE------  100 (352)
T ss_dssp             CSCEEEEEECT-TSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECT------
T ss_pred             CCCceEEEEcC-CCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCC------
Confidence            34689999998 88999998766699998  45554443221 1112357899999992   279999875310      


Q ss_pred             eeeeeecCCCceEEEEeCCCCc---eEEeec-------CCCCcceeEEecCCCEEEEEEc-------------CCCeEEE
Q 019290          171 FMSIATGDRSGRLLKYDPLKKN---VTVMYN-------GLSFPNGVALSNNNSFLLLAES-------------ATLKILR  227 (343)
Q Consensus       171 ~~~~~~~~~~~~v~~~d~~~~~---~~~~~~-------~~~~~~~i~~~~d~~~lyv~~~-------------~~~~i~~  227 (343)
                            .....+|++++.+++.   .+.+..       ....+.++++++|| .||++..             ..++|++
T Consensus       101 ------~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~G~~~~~~~~~d~~~~~g~I~r  173 (352)
T 2ism_A          101 ------GGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDG-MLYVTTGEVYERELAQDLASLGGKILR  173 (352)
T ss_dssp             ------TSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTS-CEEEECCCTTCGGGGGCTTCSSSEEEE
T ss_pred             ------CCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCC-CEEEEECCCCCCccccCCCCCceEEEE
Confidence                  0001578888876442   222221       12246899999998 5999852             2368999


Q ss_pred             EEccCcccc---------ccceeeecCCCCCCceeeCC-CCCEEEEeccCCCccccccccccccccCCCcccCCCeEEEE
Q 019290          228 FWLQGERTT---------YTPQLFAEMPRFPDNIKSDS-KGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKF  297 (343)
Q Consensus       228 ~~~~~~~~~---------~~~~~~~~~~~~p~~i~~d~-~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  297 (343)
                      ++.++.-..         ...++++..-.-|.++++|+ +|+||++++. ...+.       +        .+...+..+
T Consensus       174 i~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g-~~~~~-------~--------~~~dei~~i  237 (352)
T 2ism_A          174 LTPEGEPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHG-PSGEQ-------G--------YGHDEVNLI  237 (352)
T ss_dssp             ECTTSSBCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEEC-C---------------------CCCEEEEE
T ss_pred             EcCCCCCCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcC-CCCCC-------C--------CCCeEEEEe
Confidence            998762100         12233332112388999999 7999999886 22100       0        000123344


Q ss_pred             CCCCCE----------EEEeeCCCC--CccCCceeEEEeCCEEEEecCCCCeEEEEc
Q 019290          298 DVNGNV----------VDVLDGNEG--NTLNSVSEVQEYGEYLYTGSSVQPYVVVIK  342 (343)
Q Consensus       298 d~~g~~----------~~~~~~~~~--~~~~~~~~~~~~~g~l~i~~~~~~~i~~~~  342 (343)
                      .+.+..          ..-+..|..  .....+..+...+|+||++....++|.+++
T Consensus       238 ~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~ap~G~~~~~G~l~v~~~~~~~v~~v~  294 (352)
T 2ism_A          238 VPGGNYGWPRVVGRGNDPRYRDPLYFWPQGFPPGNLAFFRGDLYVAGLRGQALLRLV  294 (352)
T ss_dssp             CTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCEEEEEEETTEEEEEETTTTEEEEEE
T ss_pred             ccCCcCCCCcccCCCCCCCCcCCeEecCCCCCCcceEEECCEEEEEECCCCEEEEEE
Confidence            322100          000000000  011244556667999999999999998875

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.28  E-value=1.4e-09  Score=97.21  Aligned_cols=238  Identities=12%  Similarity=0.047  Sum_probs=133.8

Q ss_pred             cccccccCCCCCCCceEEEcCCCCeeEEE-ecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEE
Q 019290           24 KSYQQLQLPGVVGPESLAFDCNGEGPYVG-VSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIK  102 (343)
Q Consensus        24 ~~~~~~~~~~~~~p~~l~~d~~g~~l~~~-~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~  102 (343)
                      +..+++.++....|.+++++++|+.+|+. ..++.|+.+|..+++..........+             ......+.+++
T Consensus        32 ~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~-------------~~~~~~~~~~~   98 (349)
T 1jmx_B           32 TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVP-------------GEVGRSMYSFA   98 (349)
T ss_dssp             EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCST-------------TEEEECSSCEE
T ss_pred             cEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEccccc-------------ccccccccceE
Confidence            44556666643369999999999867754 46789999999876544221100000             00012367899


Q ss_pred             EeCCCCeEEEEeCC------------CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCccccc--c
Q 019290          103 FNPVTCDLYIADAY------------FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQR--R  168 (343)
Q Consensus       103 ~~~~~~~l~v~~~~------------~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~--~  168 (343)
                      ++++++.||++...            ..|+.+|.++++...........  ..+.++++++ ||++|++... .+-+  .
T Consensus        99 ~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~--~~~~~~~~s~-dg~l~~~~~~-i~~~d~~  174 (349)
T 1jmx_B           99 ISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMP--RQVYLMRAAD-DGSLYVAGPD-IYKMDVK  174 (349)
T ss_dssp             ECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECC--SSCCCEEECT-TSCEEEESSS-EEEECTT
T ss_pred             ECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCC--CcccceeECC-CCcEEEccCc-EEEEeCC
Confidence            99855678888532            56999998875432221111111  2467888999 5888875321 1000  0


Q ss_pred             cce--eeeeecC--------------------------------------------CCceEEEEeCCCCceEEee--cCC
Q 019290          169 QYF--MSIATGD--------------------------------------------RSGRLLKYDPLKKNVTVMY--NGL  200 (343)
Q Consensus       169 ~~~--~~~~~~~--------------------------------------------~~~~v~~~d~~~~~~~~~~--~~~  200 (343)
                      ...  ..+....                                            ....++.++..+++++.+.  ...
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (349)
T 1jmx_B          175 TGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLT  254 (349)
T ss_dssp             TCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECS
T ss_pred             CCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCC
Confidence            000  0000000                                            0001122344333332221  112


Q ss_pred             CCcceeEEec-CCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCC-CEEEEeccCCCccccccccc
Q 019290          201 SFPNGVALSN-NNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKG-EFWIAMNSARGKIESNKKTA  278 (343)
Q Consensus       201 ~~~~~i~~~~-d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G-~lwi~~~~~~~~~~~~~~~~  278 (343)
                      ..+.++++++ +++.+|++   .+.|++|++.+.    +..........|.+++++++| .||++. .            
T Consensus       255 ~~~~~~~~sp~dg~~l~~~---~~~v~~~d~~~~----~~~~~~~~~~~~~~~~~s~dg~~l~~~~-~------------  314 (349)
T 1jmx_B          255 ELYFTGLRSPKDPNQIYGV---LNRLAKYDLKQR----KLIKAANLDHTYYCVAFDKKGDKLYLGG-T------------  314 (349)
T ss_dssp             SCEEEEEECSSCTTEEEEE---ESEEEEEETTTT----EEEEEEECSSCCCEEEECSSSSCEEEES-B------------
T ss_pred             CcceeeEecCCCCCEEEEE---cCeEEEEECccC----eEEEEEcCCCCccceEECCCCCEEEEec-C------------
Confidence            3466778889 99999888   579999998652    221111233457889999998 577753 3            


Q ss_pred             cccccCCCcccCCCeEEEECCC-CCEEEEeeCC
Q 019290          279 FCEETAKPWFLRDPVGVKFDVN-GNVVDVLDGN  310 (343)
Q Consensus       279 ~~~~~~~~~~~~~~~v~~~d~~-g~~~~~~~~~  310 (343)
                                  .+.|..+|.+ ++.+..+..+
T Consensus       315 ------------~~~v~v~d~~~~~~~~~~~~~  335 (349)
T 1jmx_B          315 ------------FNDLAVFNPDTLEKVKNIKLP  335 (349)
T ss_dssp             ------------SSEEEEEETTTTEEEEEEECS
T ss_pred             ------------CCeEEEEeccccceeeeeecC
Confidence                        2477888874 6667777655

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.27  E-value=1.4e-09  Score=92.87  Aligned_cols=190  Identities=14%  Similarity=0.113  Sum_probs=125.7

Q ss_pred             eeEEEeCCCCeEEEEeCCC---eEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeee
Q 019290           99 LGIKFNPVTCDLYIADAYF---GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIA  175 (343)
Q Consensus        99 ~gi~~~~~~~~l~v~~~~~---gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~  175 (343)
                      .|+.++  ++.||+++...   .|.++|++++++..-.....   ..+..+++++.  +++|+.+..             
T Consensus        46 qGL~~~--~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~---~~FgeGit~~g--~~ly~ltw~-------------  105 (262)
T 3nol_A           46 EGFFYR--NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK---RYFGEGISDWK--DKIVGLTWK-------------  105 (262)
T ss_dssp             EEEEEE--TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT---TCCEEEEEEET--TEEEEEESS-------------
T ss_pred             ceEEEE--CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC---ccceeEEEEeC--CEEEEEEee-------------
Confidence            689998  47999996432   59999999998765433321   13445678876  699998764             


Q ss_pred             ecCCCceEEEEeCCCCceEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCC----CCc
Q 019290          176 TGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRF----PDN  251 (343)
Q Consensus       176 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~----p~~  251 (343)
                          .+.++.||+++.+...-...  ...|..+.+|++.||+++ ..++|+.+|+.+.....++.+-  ..+.    ++.
T Consensus       106 ----~~~v~v~D~~t~~~~~ti~~--~~eG~glt~dg~~L~~Sd-Gs~~i~~iDp~T~~v~~~I~V~--~~g~~~~~lNE  176 (262)
T 3nol_A          106 ----NGLGFVWNIRNLRQVRSFNY--DGEGWGLTHNDQYLIMSD-GTPVLRFLDPESLTPVRTITVT--AHGEELPELNE  176 (262)
T ss_dssp             ----SSEEEEEETTTCCEEEEEEC--SSCCCCEEECSSCEEECC-SSSEEEEECTTTCSEEEEEECE--ETTEECCCEEE
T ss_pred             ----CCEEEEEECccCcEEEEEEC--CCCceEEecCCCEEEEEC-CCCeEEEEcCCCCeEEEEEEec--cCCccccccce
Confidence                56899999987776432222  125555557788899987 4789999997753321222221  1122    233


Q ss_pred             eeeCCCCCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECC-CCCEEEEeeCCCC--------CccCCceeEE
Q 019290          252 IKSDSKGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDV-NGNVVDVLDGNEG--------NTLNSVSEVQ  322 (343)
Q Consensus       252 i~~d~~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~~~~~--------~~~~~~~~~~  322 (343)
                      +... +|+||++.+.                        ...|+++|+ +|+++..+..+.-        .......++.
T Consensus       177 Le~~-~G~lyan~w~------------------------~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA  231 (262)
T 3nol_A          177 LEWV-DGEIFANVWQ------------------------TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIA  231 (262)
T ss_dssp             EEEE-TTEEEEEETT------------------------SSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEE
T ss_pred             eEEE-CCEEEEEEcc------------------------CCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEE
Confidence            5554 7999999987                        458999998 6888888764311        0112334444


Q ss_pred             Ee--CCEEEEecCCCCeEEEEc
Q 019290          323 EY--GEYLYTGSSVQPYVVVIK  342 (343)
Q Consensus       323 ~~--~g~l~i~~~~~~~i~~~~  342 (343)
                      .+  .++||+++..=..+..++
T Consensus       232 ~dp~~~~lfVTGK~Wp~~~ev~  253 (262)
T 3nol_A          232 WDKEHHRLFVTGKLWPKVFEIT  253 (262)
T ss_dssp             EETTTTEEEEEETTCSEEEEEE
T ss_pred             EcCCCCEEEEECCCCCceEEEE
Confidence            33  789999998888877664

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=99.27  E-value=1e-08  Score=87.93  Aligned_cols=199  Identities=8%  Similarity=0.038  Sum_probs=128.8

Q ss_pred             CCeeeEEEeCCCCeEEEEeCCC-eEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeee
Q 019290           96 GRPLGIKFNPVTCDLYIADAYF-GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSI  174 (343)
Q Consensus        96 ~~p~gi~~~~~~~~l~v~~~~~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~  174 (343)
                      ..+.|++++++.++||++.... .|+++|++ +++..-.... +  ..-+.+|++++ +|.+|+++..            
T Consensus        27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~-g--~~D~EGIa~~~-~g~~~vs~E~------------   89 (255)
T 3qqz_A           27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLD-F--VKDLETIEYIG-DNQFVISDER------------   89 (255)
T ss_dssp             SCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECS-S--CSSEEEEEECS-TTEEEEEETT------------
T ss_pred             cCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecC-C--CCChHHeEEeC-CCEEEEEECC------------
Confidence            3578999998678899754444 49999998 6654432221 1  13477899998 5999998754            


Q ss_pred             eecCCCceEEEEeCCC-Cce---EEeecC------CCCcceeEEecCCCEEEEEEcCCC-eEEEEEccCccccccceee-
Q 019290          175 ATGDRSGRLLKYDPLK-KNV---TVMYNG------LSFPNGVALSNNNSFLLLAESATL-KILRFWLQGERTTYTPQLF-  242 (343)
Q Consensus       175 ~~~~~~~~v~~~d~~~-~~~---~~~~~~------~~~~~~i~~~~d~~~lyv~~~~~~-~i~~~~~~~~~~~~~~~~~-  242 (343)
                           .++++.++... +..   ......      -....|++++++++.||++..... .|+.++  +-.......+. 
T Consensus        90 -----~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~--g~~~~~~l~i~~  162 (255)
T 3qqz_A           90 -----DYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVN--GLLSSNELHISK  162 (255)
T ss_dssp             -----TTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEE--STTCSSCCEEEE
T ss_pred             -----CCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEc--ccccCCceeeec
Confidence                 34566664322 221   111111      122489999999989999865544 788887  21000111111 


Q ss_pred             ----ec--CCCCCCceeeCCC-CCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECCCCCEEEEeeCCCCC--
Q 019290          243 ----AE--MPRFPDNIKSDSK-GEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEGN--  313 (343)
Q Consensus       243 ----~~--~~~~p~~i~~d~~-G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~~~--  313 (343)
                          ..  .-.-+.++++|+. |++|+.+..                        ...|..+|.+|+.+..+....+.  
T Consensus       163 ~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~------------------------s~~L~~~d~~g~~~~~~~L~~g~~~  218 (255)
T 3qqz_A          163 DKALQRQFTLDDVSGAEFNQQKNTLLVLSHE------------------------SRALQEVTLVGEVIGEMSLTKGSRG  218 (255)
T ss_dssp             CHHHHHTCCSSCCCEEEEETTTTEEEEEETT------------------------TTEEEEECTTCCEEEEEECSTTGGG
T ss_pred             chhhccccccCCceeEEEcCCCCeEEEEECC------------------------CCeEEEEcCCCCEEEEEEcCCccCC
Confidence                00  0113678999984 789999887                        45888999999988888766442  


Q ss_pred             ---ccCCceeEEEe-CCEEEEecCCCCeEEEEcC
Q 019290          314 ---TLNSVSEVQEY-GEYLYTGSSVQPYVVVIKA  343 (343)
Q Consensus       314 ---~~~~~~~~~~~-~g~l~i~~~~~~~i~~~~~  343 (343)
                         .+..+-++..+ +|+|||.+-. |.+++|+.
T Consensus       219 l~~~~~qpEGia~d~~G~lyIvsE~-n~~y~f~~  251 (255)
T 3qqz_A          219 LSHNIKQAEGVAMDASGNIYIVSEP-NRFYRFTP  251 (255)
T ss_dssp             CSSCCCSEEEEEECTTCCEEEEETT-TEEEEEEC
T ss_pred             cccccCCCCeeEECCCCCEEEEcCC-ceEEEEEe
Confidence               23455566555 8999999655 78988863

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.26  E-value=7.4e-10  Score=94.61  Aligned_cols=192  Identities=15%  Similarity=0.173  Sum_probs=124.7

Q ss_pred             eeeEEEeCCCCeEEEEeCCCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeee
Q 019290           98 PLGIKFNPVTCDLYIADAYFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIAT  176 (343)
Q Consensus        98 p~gi~~~~~~~~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~  176 (343)
                      ..|+.++  ++.||+++...| |.++|++++++..-. .. .  ..+..+++++.  +++|+.+..              
T Consensus        57 tqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~--~~FgeGit~~g--~~Ly~ltw~--------------  114 (268)
T 3nok_A           57 TQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWME-RL-G--NIFAEGLASDG--ERLYQLTWT--------------  114 (268)
T ss_dssp             EEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE-EC-T--TCCEEEEEECS--SCEEEEESS--------------
T ss_pred             cceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC-C--CcceeEEEEeC--CEEEEEEcc--------------
Confidence            3688888  589999976544 999999999865433 21 1  12345678876  699998754              


Q ss_pred             cCCCceEEEEeCCCCceEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecC-C-CCCCceee
Q 019290          177 GDRSGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEM-P-RFPDNIKS  254 (343)
Q Consensus       177 ~~~~~~v~~~d~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~-~~p~~i~~  254 (343)
                         .+.++.||+++.+...-....  +.|..+.+|++.||+++ .+++|+.+|..+...+.++++-... + ..++.+..
T Consensus       115 ---~~~v~V~D~~Tl~~~~ti~~~--~eGwGLt~Dg~~L~vSd-Gs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~  188 (268)
T 3nok_A          115 ---EGLLFTWSGMPPQRERTTRYS--GEGWGLCYWNGKLVRSD-GGTMLTFHEPDGFALVGAVQVKLRGQPVELINELEC  188 (268)
T ss_dssp             ---SCEEEEEETTTTEEEEEEECS--SCCCCEEEETTEEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEE
T ss_pred             ---CCEEEEEECCcCcEEEEEeCC--CceeEEecCCCEEEEEC-CCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEE
Confidence               578999999887765333222  34444556788999997 5899999997653321222221110 0 12234444


Q ss_pred             CCCCCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECC-CCCEEEEeeCC---------CCCccCCceeEEEe
Q 019290          255 DSKGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDV-NGNVVDVLDGN---------EGNTLNSVSEVQEY  324 (343)
Q Consensus       255 d~~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~~~---------~~~~~~~~~~~~~~  324 (343)
                      . +|+||++.+.                        ...|.+||+ +|+++..+...         .....+...++.-+
T Consensus       189 ~-dG~lyanvw~------------------------s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~d  243 (268)
T 3nok_A          189 A-NGVIYANIWH------------------------SSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVE  243 (268)
T ss_dssp             E-TTEEEEEETT------------------------CSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEEC
T ss_pred             e-CCEEEEEECC------------------------CCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEc
Confidence            4 7899999887                        458899998 58887777532         01111233444433


Q ss_pred             --CCEEEEecCCCCeEEEEc
Q 019290          325 --GEYLYTGSSVQPYVVVIK  342 (343)
Q Consensus       325 --~g~l~i~~~~~~~i~~~~  342 (343)
                        .++||+++..=..+..++
T Consensus       244 p~~~rlfVTGK~Wp~~~ev~  263 (268)
T 3nok_A          244 PGSGRIFMTGKLWPRLFEVR  263 (268)
T ss_dssp             TTTCCEEEEETTCSEEEEEE
T ss_pred             CCCCEEEEeCCCCCceEEEE
Confidence              688999998888777664

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=99.25  E-value=1.7e-09  Score=97.92  Aligned_cols=158  Identities=16%  Similarity=0.153  Sum_probs=101.1

Q ss_pred             CcCCeeeEEEeCCCCeEEEEeCCCeEEEEeCCCCeEEEccccc-CCCCccCcceeEEeCC---CCeEEEEeCC-cccccc
Q 019290           94 LCGRPLGIKFNPVTCDLYIADAYFGLMVVGPNGGQAQQLASSA-GGIPFRFTNDLDIDPN---TGIVYFTDSS-IYFQRR  168 (343)
Q Consensus        94 ~~~~p~gi~~~~~~~~l~v~~~~~gi~~~d~~~~~~~~~~~~~-~~~~~~~~~~i~~d~~---dg~l~v~~~~-~~~~~~  168 (343)
                      ....|.+|++++ +++|||++....|++++.+ ++ +.+.... .......+++|++++.   ++.||++... ..    
T Consensus        27 ~l~~P~~ia~~p-dG~l~V~e~~g~I~~~d~~-G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~----   99 (354)
T 3a9g_A           27 DLEVPWSIAPLG-GGRYLVTERPGRLVLISPS-GK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAE----   99 (354)
T ss_dssp             SCSCEEEEEEEE-TTEEEEEETTTEEEEECSS-CE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECG----
T ss_pred             CCCCCeEEEEcC-CCeEEEEeCCCEEEEEeCC-Cc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCC----
Confidence            345799999998 8899999876669999854 55 4432211 1112356899999983   3899997642 00    


Q ss_pred             cceeeeeecCCCceEEEEeCCCC--c---eEEeec-----CCCCcceeEEecCCCEEEEEEc-------------CCCeE
Q 019290          169 QYFMSIATGDRSGRLLKYDPLKK--N---VTVMYN-----GLSFPNGVALSNNNSFLLLAES-------------ATLKI  225 (343)
Q Consensus       169 ~~~~~~~~~~~~~~v~~~d~~~~--~---~~~~~~-----~~~~~~~i~~~~d~~~lyv~~~-------------~~~~i  225 (343)
                             .+....+|++++.+.+  .   .+.+..     ..-.++++++++||. ||++.-             ..++|
T Consensus       100 -------~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~-Lyvt~G~~~~~~~~~d~~~~~G~I  171 (354)
T 3a9g_A          100 -------GGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM-LYITTGDAADPRLAQDLSSLAGKI  171 (354)
T ss_dssp             -------GGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC-EEEECCCTTCGGGGTCTTCCSSEE
T ss_pred             -------CCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc-EEEEECCCCCCccccCCCCCCeEE
Confidence                   0000256888886543  1   222221     122468899999985 999842             23689


Q ss_pred             EEEEccCcccc----ccceeeecCCCCCCceeeCC-CCCEEEEecc
Q 019290          226 LRFWLQGERTT----YTPQLFAEMPRFPDNIKSDS-KGEFWIAMNS  266 (343)
Q Consensus       226 ~~~~~~~~~~~----~~~~~~~~~~~~p~~i~~d~-~G~lwi~~~~  266 (343)
                      +|++.++.-..    ...++++..-.-|.++++|+ +|+||++++.
T Consensus       172 ~ri~~dG~~p~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g  217 (354)
T 3a9g_A          172 LRVDEEGRPPADNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEHG  217 (354)
T ss_dssp             EEECTTSCCCTTSSSTTCCEEEECCSCCCEEEECTTTCCEEEEECC
T ss_pred             EEEcCCCCCCCCCCCCCCcEEEEccCCcceEEEeCCCCCEEEEecC
Confidence            99998763100    02344443222389999999 7999999886

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=99.24  E-value=4e-09  Score=98.55  Aligned_cols=177  Identities=16%  Similarity=0.162  Sum_probs=110.0

Q ss_pred             CCCCCCceEEEcCCCCeeEEEecC-CEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCC---C
Q 019290           32 PGVVGPESLAFDCNGEGPYVGVSD-GRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPV---T  107 (343)
Q Consensus        32 ~~~~~p~~l~~d~~g~~l~~~~~~-g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~---~  107 (343)
                      .++..|.+|+++++|+ +|++... ++|+++++.++....+...+...           ........+.||+++++   +
T Consensus        24 ~~l~~P~~~a~~pdG~-l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~-----------~~~~g~~Gllgia~~Pdf~~~   91 (454)
T 1cru_A           24 SNLNKPHALLWGPDNQ-IWLTERATGKILRVNPESGSVKTVFQVPEIV-----------NDADGQNGLLGFAFHPDFKNN   91 (454)
T ss_dssp             CCCSSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEECTTCC-----------CCTTSSCSEEEEEECTTTTTS
T ss_pred             CCCCCceEEEEcCCCc-EEEEEcCCCEEEEEECCCCcEeEEecCCccc-----------cccCCCCceeEEEECCCcCcC
Confidence            3577899999999999 6665555 47999987666665554221100           00012345789999985   7


Q ss_pred             CeEEEEeCC-------------CeEEEEeCCC--Ce---EEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccc---
Q 019290          108 CDLYIADAY-------------FGLMVVGPNG--GQ---AQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQ---  166 (343)
Q Consensus       108 ~~l~v~~~~-------------~gi~~~d~~~--~~---~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~---  166 (343)
                      +.||++.+.             ..|++++.+.  ++   .+.+............+.|++++ ||.||++.......   
T Consensus        92 g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~p-DG~Lyv~~Gd~~~~~~~  170 (454)
T 1cru_A           92 PYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGP-DQKIYYTIGDQGRNQLA  170 (454)
T ss_dssp             CEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECT-TSCEEEEECCTTTTSGG
T ss_pred             CEEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECC-CCeEEEEECCCCCCCcc
Confidence            899999642             3588887543  22   22332212222235688999999 69999986432110   


Q ss_pred             ----ccccee--------eeeecCCCceEEEEeCCCC-----------ceEEeecCCCCcceeEEecCCCEEEEEEcCC
Q 019290          167 ----RRQYFM--------SIATGDRSGRLLKYDPLKK-----------NVTVMYNGLSFPNGVALSNNNSFLLLAESAT  222 (343)
Q Consensus       167 ----~~~~~~--------~~~~~~~~~~v~~~d~~~~-----------~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~  222 (343)
                          ..+...        ........++|+|+++++.           ..+.+..+++.+.++++++++ .||+++...
T Consensus       171 ~~~~~~~~~~~p~~~~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~G~RNp~gla~dp~G-~L~~~d~g~  248 (454)
T 1cru_A          171 YLFLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRNPQGLAFTPNG-KLLQSEQGP  248 (454)
T ss_dssp             GTTSCCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCSEEEEEEECTTS-CEEEEEECS
T ss_pred             ccccccccccccccccccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEECCCCcceEEECCCC-CEEEEecCC
Confidence                000000        0000112578999998854           345566778889999999975 599988643

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.24  E-value=9.8e-09  Score=86.91  Aligned_cols=192  Identities=15%  Similarity=0.085  Sum_probs=126.1

Q ss_pred             CeeeEEEeCCCCeEEEEeCCC---eEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceee
Q 019290           97 RPLGIKFNPVTCDLYIADAYF---GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMS  173 (343)
Q Consensus        97 ~p~gi~~~~~~~~l~v~~~~~---gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~  173 (343)
                      ...|+.++.  +.||+++...   .|.++|++++++..-......   .+..+++++.  +++|+.+..           
T Consensus        22 ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~---~fgeGi~~~~--~~ly~ltw~-----------   83 (243)
T 3mbr_X           22 FTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPPP---YFGAGIVAWR--DRLIQLTWR-----------   83 (243)
T ss_dssp             CEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT---CCEEEEEEET--TEEEEEESS-----------
T ss_pred             ccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC---cceeEEEEeC--CEEEEEEee-----------
Confidence            346999984  7999996543   599999999988654332211   2345677775  799998754           


Q ss_pred             eeecCCCceEEEEeCCCCceEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCC----CC
Q 019290          174 IATGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPR----FP  249 (343)
Q Consensus       174 ~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~----~p  249 (343)
                            .+.++.||+++.+...-....  ..|..+..|++.||+++ .+++|+.+|+.+-....++++-  ..+    ..
T Consensus        84 ------~~~v~v~D~~tl~~~~ti~~~--~~Gwglt~dg~~L~vSd-gs~~l~~iDp~t~~~~~~I~V~--~~g~~~~~l  152 (243)
T 3mbr_X           84 ------NHEGFVYDLATLTPRARFRYP--GEGWALTSDDSHLYMSD-GTAVIRKLDPDTLQQVGSIKVT--AGGRPLDNL  152 (243)
T ss_dssp             ------SSEEEEEETTTTEEEEEEECS--SCCCEEEECSSCEEEEC-SSSEEEEECTTTCCEEEEEECE--ETTEECCCE
T ss_pred             ------CCEEEEEECCcCcEEEEEeCC--CCceEEeeCCCEEEEEC-CCCeEEEEeCCCCeEEEEEEEc--cCCcccccc
Confidence                  578999999887764323222  24555567888899997 5889999997653321222211  111    12


Q ss_pred             CceeeCCCCCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECC-CCCEEEEeeCCCC---------CccCCce
Q 019290          250 DNIKSDSKGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDV-NGNVVDVLDGNEG---------NTLNSVS  319 (343)
Q Consensus       250 ~~i~~d~~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~~~~~---------~~~~~~~  319 (343)
                      +.+... +|++|+..+.                        ...|.++|+ +|+++..+....-         .......
T Consensus       153 NeLe~~-~G~lyanvw~------------------------s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlN  207 (243)
T 3mbr_X          153 NELEWV-NGELLANVWL------------------------TSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLN  207 (243)
T ss_dssp             EEEEEE-TTEEEEEETT------------------------TTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEE
T ss_pred             eeeEEe-CCEEEEEECC------------------------CCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceE
Confidence            334433 7899999887                        458899998 6888877753210         0112333


Q ss_pred             eEEEe--CCEEEEecCCCCeEEEEc
Q 019290          320 EVQEY--GEYLYTGSSVQPYVVVIK  342 (343)
Q Consensus       320 ~~~~~--~g~l~i~~~~~~~i~~~~  342 (343)
                      ++.-+  .++||+++..=..+..++
T Consensus       208 GIA~d~~~~~lfVTGK~wp~~~~v~  232 (243)
T 3mbr_X          208 GIAFDAEHDRLFVTGKRWPMLYEIR  232 (243)
T ss_dssp             EEEEETTTTEEEEEETTCSEEEEEE
T ss_pred             EEEEcCCCCEEEEECCCCCcEEEEE
Confidence            44333  789999999888877664

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.23  E-value=8.3e-09  Score=99.10  Aligned_cols=251  Identities=12%  Similarity=0.094  Sum_probs=154.5

Q ss_pred             ccccccccCCCCCCCceEEEcCCCCeeEEEecCCEEEEEEcC--CCCeE-EeeecCCCccccccCCCCCcccCCCcCCee
Q 019290           23 SKSYQQLQLPGVVGPESLAFDCNGEGPYVGVSDGRILKWKAA--NSGWT-EFATTAPHRAREICDGSTNTTLEPLCGRPL   99 (343)
Q Consensus        23 ~~~~~~~~~~~~~~p~~l~~d~~g~~l~~~~~~g~i~~~d~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~   99 (343)
                      .+.+.++.++.  .|+++++++||+.+|++..++.|..+|..  +.+.. .+                     .....|.
T Consensus       187 ~~v~~~i~~g~--~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i---------------------~~G~~P~  243 (567)
T 1qks_A          187 YEIKTVLDTGY--AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEI---------------------KIGSEAR  243 (567)
T ss_dssp             CCEEEEEECSS--CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEE---------------------ECCSEEE
T ss_pred             CeEEEEEeCCC--CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEE---------------------ecCCCCc
Confidence            34455565554  68999999999999988888999999985  43321 22                     1223588


Q ss_pred             eEEEe----CCCCeEEEEeCC-CeEEEEeCCCCeEEEccccc----CC---CCccCcceeEEeCCCCeEEEEeCCccccc
Q 019290          100 GIKFN----PVTCDLYIADAY-FGLMVVGPNGGQAQQLASSA----GG---IPFRFTNDLDIDPNTGIVYFTDSSIYFQR  167 (343)
Q Consensus       100 gi~~~----~~~~~l~v~~~~-~gi~~~d~~~~~~~~~~~~~----~~---~~~~~~~~i~~d~~dg~l~v~~~~~~~~~  167 (343)
                      +++++    ++++.+|+++.. ..+..+|..+.+........    ..   .+...+..+...+.+..++++...     
T Consensus       244 ~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~-----  318 (567)
T 1qks_A          244 SIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE-----  318 (567)
T ss_dssp             EEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT-----
T ss_pred             eeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecC-----
Confidence            99999    556789999754 45889998887654432211    00   011234566666632334443322     


Q ss_pred             ccceeeeeecCCCceEEEEeCCCCceEE--eecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecC
Q 019290          168 RQYFMSIATGDRSGRLLKYDPLKKNVTV--MYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEM  245 (343)
Q Consensus       168 ~~~~~~~~~~~~~~~v~~~d~~~~~~~~--~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~  245 (343)
                                  .+.|+.+|....+...  .......+.++.++++++++|++....+.|.++|..+...    ......
T Consensus       319 ------------~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl----~~~i~v  382 (567)
T 1qks_A          319 ------------TGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKL----VAIEDT  382 (567)
T ss_dssp             ------------TTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEE----EEEEEC
T ss_pred             ------------CCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcE----EEEEec
Confidence                        5789989876432111  1223456778899999999999998889999999875322    111122


Q ss_pred             -CC--CC-Ccee-eCCC-CCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECCC--------CCEEEEeeCCC
Q 019290          246 -PR--FP-DNIK-SDSK-GEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVN--------GNVVDVLDGNE  311 (343)
Q Consensus       246 -~~--~p-~~i~-~d~~-G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~--------g~~~~~~~~~~  311 (343)
                       ..  +| .+.. ++++ |.+|++.+..                       .+.|..||.+        .+.+..+....
T Consensus       383 gg~~Phpg~g~~~~~p~~g~v~~t~~~g-----------------------~~~Vsvid~~~~~~~~~~~kvv~~i~~~g  439 (567)
T 1qks_A          383 GGQTPHPGRGANFVHPTFGPVWATSHMG-----------------------DDSVALIGTDPEGHPDNAWKILDSFPALG  439 (567)
T ss_dssp             SSSSBCCTTCEEEEETTTEEEEEEEBSS-----------------------SSEEEEEECCTTTCTTTBTSEEEEEECSC
T ss_pred             cCcCCCCccceeeECCCCCcEEEeCCCC-----------------------CCeEEEecCCCCCCccccCEEEEEEecCC
Confidence             11  23 3543 5776 7899887641                       1356677653        45666665432


Q ss_pred             CCccCCceeEEEeCCEEEEecC-C-----CCeEEEEc
Q 019290          312 GNTLNSVSEVQEYGEYLYTGSS-V-----QPYVVVIK  342 (343)
Q Consensus       312 ~~~~~~~~~~~~~~g~l~i~~~-~-----~~~i~~~~  342 (343)
                      +  ...+-...++..+||+.+. +     +++|.+|+
T Consensus       440 ~--g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d  474 (567)
T 1qks_A          440 G--GSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFD  474 (567)
T ss_dssp             S--CCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEE
T ss_pred             C--CCEEEEeCCCCCeEEEecCCCCCcccCceEEEEE
Confidence            1  1122223345678999884 3     45888886

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=99.20  E-value=2.4e-08  Score=90.20  Aligned_cols=242  Identities=12%  Similarity=0.104  Sum_probs=153.0

Q ss_pred             CCCCCCceEEEc-CCCCeeEEEecCC------EEEEEEcC--------CCCe-EEeeecCCCccccccCCCCCcccCCCc
Q 019290           32 PGVVGPESLAFD-CNGEGPYVGVSDG------RILKWKAA--------NSGW-TEFATTAPHRAREICDGSTNTTLEPLC   95 (343)
Q Consensus        32 ~~~~~p~~l~~d-~~g~~l~~~~~~g------~i~~~d~~--------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (343)
                      |...-|-++++| .+|+ +|++...-      .|-.++..        +... ..|+.    .  ..|         ...
T Consensus        23 p~n~~P~gv~vd~~~gR-iFvt~PR~~~gvp~TL~~v~~~~~~~~~~~~p~ll~PYP~----w--~~~---------~~l   86 (381)
T 3q6k_A           23 PDNMISTAFAYDAEGEK-LFLAVPRKLPRVPYTLAEVDTKNSLGVKGKHSPLLNKFSG----H--KTG---------KEL   86 (381)
T ss_dssp             GGGCCCCEEEEETTTTE-EEEECCTTSTTCSCSEEEEEHHHHTTCTTCSSCCBEECTT----C--SSS---------CSS
T ss_pred             cCccceeeeeeecCCCc-EEEEeCCCCCCCCcEEEEEeCCCCcccccCCcccccCCCC----C--ccc---------cce
Confidence            443458899995 7777 77665431      34444432        1122 33321    0  122         334


Q ss_pred             CCeeeEEEeCCCCeEEEEeCC-------------C---eEEEEeCCCC--eEEEcccc--cCCCCccCcceeEEe-C--C
Q 019290           96 GRPLGIKFNPVTCDLYIADAY-------------F---GLMVVGPNGG--QAQQLASS--AGGIPFRFTNDLDID-P--N  152 (343)
Q Consensus        96 ~~p~gi~~~~~~~~l~v~~~~-------------~---gi~~~d~~~~--~~~~~~~~--~~~~~~~~~~~i~~d-~--~  152 (343)
                      ..+.++.+|+ .++|||.|++             .   .|..+|++++  ++......  ....+...++++++| .  .
T Consensus        87 vsV~~v~iD~-~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~  165 (381)
T 3q6k_A           87 TSIYQPVIDD-CRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPK  165 (381)
T ss_dssp             SCEEEEEECT-TCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTT
T ss_pred             EEeeEEEEcC-CCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCC
Confidence            4578999998 9999999865             1   3889999998  65433222  112234678999999 2  1


Q ss_pred             ----CCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEeec-----C--------------CCCcceeEEe
Q 019290          153 ----TGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYN-----G--------------LSFPNGVALS  209 (343)
Q Consensus       153 ----dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~-----~--------------~~~~~~i~~~  209 (343)
                          ++.+|++|..                 ..+|..||..+++..++..     +              ..+..+|+++
T Consensus       166 ~~c~~~~aYItD~~-----------------~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLs  228 (381)
T 3q6k_A          166 GDCSETFVYITNFL-----------------RGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLG  228 (381)
T ss_dssp             TTSCSEEEEEEETT-----------------TTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEEC
T ss_pred             CCCCccEEEEEcCC-----------------CCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEec
Confidence                3679999975                 4567777777666544331     1              1356889999


Q ss_pred             cC----CCEEEEEEcCCCeEEEEEcc---CccccccceeeecCCCCCC--ceeeC-CCCCEEEEeccCCCcccccccccc
Q 019290          210 NN----NSFLLLAESATLKILRFWLQ---GERTTYTPQLFAEMPRFPD--NIKSD-SKGEFWIAMNSARGKIESNKKTAF  279 (343)
Q Consensus       210 ~d----~~~lyv~~~~~~~i~~~~~~---~~~~~~~~~~~~~~~~~p~--~i~~d-~~G~lwi~~~~~~~~~~~~~~~~~  279 (343)
                      ++    ++.||+....+..++++...   .......++.+.+.....+  +++.| .+|+||++...             
T Consensus       229 p~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~-------------  295 (381)
T 3q6k_A          229 DRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEAN-------------  295 (381)
T ss_dssp             CCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESS-------------
T ss_pred             CCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEecc-------------
Confidence            98    88999998888889998743   1111023333333221134  35676 78999999887             


Q ss_pred             ccccCCCcccCCCeEEEECCCC-C-----EEEEeeCCCCCccCCceeEEEe-CCEEEEecCC
Q 019290          280 CEETAKPWFLRDPVGVKFDVNG-N-----VVDVLDGNEGNTLNSVSEVQEY-GEYLYTGSSV  334 (343)
Q Consensus       280 ~~~~~~~~~~~~~~v~~~d~~g-~-----~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~  334 (343)
                                 .++|.|.++++ .     ....++++   ....+..+..+ +|+||+.+..
T Consensus       296 -----------~~aI~~w~~~~~~~~~~n~~~l~~d~---~l~~pd~~~i~~~g~Lwv~sn~  343 (381)
T 3q6k_A          296 -----------TKQVSCWNTQKMPLRMKNTDVVYTSS---RFVFGTDISVDSKGGLWFMSNG  343 (381)
T ss_dssp             -----------SSEEEEEETTSCSBCGGGEEEEEECT---TCCSEEEEEECTTSCEEEEECS
T ss_pred             -----------CCeEEEEeCCCCccccCceEEEEECC---CccccCeEEECCCCeEEEEECc
Confidence                       56899999987 2     24444544   35677777775 8899997754

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=99.20  E-value=2.9e-09  Score=93.86  Aligned_cols=162  Identities=14%  Similarity=0.086  Sum_probs=105.2

Q ss_pred             CcCCeeeEEEeCCCCeEEEEeCCC-eEEEEeCCCCeEEEcc-cccC--CCCccCcceeEE---eCCCCeEEEE-eCCccc
Q 019290           94 LCGRPLGIKFNPVTCDLYIADAYF-GLMVVGPNGGQAQQLA-SSAG--GIPFRFTNDLDI---DPNTGIVYFT-DSSIYF  165 (343)
Q Consensus        94 ~~~~p~gi~~~~~~~~l~v~~~~~-gi~~~d~~~~~~~~~~-~~~~--~~~~~~~~~i~~---d~~dg~l~v~-~~~~~~  165 (343)
                      ....|.++.+++.++.+|+++... +|.++++.++.+..+. ....  +.+...+.+|.+   |+ +|+||+. +.+..|
T Consensus        11 ~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~~af   89 (334)
T 2p9w_A           11 KNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNAKSF   89 (334)
T ss_dssp             TTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEETTTT
T ss_pred             cccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC-CCcEEEEEcccccc
Confidence            344688999998789999998665 4999999866554442 1111  333346789999   78 5999984 422112


Q ss_pred             ccccceeeeeecCCCceEEEEeCC---CCceEEeec--------------CCCCcceeEEecCCCEEEEEEcCC-CeEEE
Q 019290          166 QRRQYFMSIATGDRSGRLLKYDPL---KKNVTVMYN--------------GLSFPNGVALSNNNSFLLLAESAT-LKILR  227 (343)
Q Consensus       166 ~~~~~~~~~~~~~~~~~v~~~d~~---~~~~~~~~~--------------~~~~~~~i~~~~d~~~lyv~~~~~-~~i~~  227 (343)
                      ......     ..+...|.+||+.   +++......              ....+++++++++|+ .||+++.. +.|++
T Consensus        90 ~~~g~~-----~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn-aYVt~s~~~~~I~r  163 (334)
T 2p9w_A           90 NFADQS-----SHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGN-SYVAFALGMPAIAR  163 (334)
T ss_dssp             CTTSCC-----SSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSC-EEEEEEESSCEEEE
T ss_pred             cccccc-----cCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCC-EEEeCCCCCCeEEE
Confidence            111000     0124569999987   555432221              123489999999886 89998888 99999


Q ss_pred             EEccCccccccceeee-cC-C----CCCCceeeCCCCCEEEEecc
Q 019290          228 FWLQGERTTYTPQLFA-EM-P----RFPDNIKSDSKGEFWIAMNS  266 (343)
Q Consensus       228 ~~~~~~~~~~~~~~~~-~~-~----~~p~~i~~d~~G~lwi~~~~  266 (343)
                      ++.++...    ..+. .. +    ..+.||+++++|+++++...
T Consensus       164 V~pdG~~~----~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~  204 (334)
T 2p9w_A          164 VSADGKTV----STFAWESGNGGQRPGYSGITFDPHSNKLIAFGG  204 (334)
T ss_dssp             ECTTSCCE----EEEEECCCCSSSCCSCSEEEEETTTTEEEEESS
T ss_pred             EeCCCCEE----eeeeecCCCcccccCcceEEEeCCCCEEEEEcC
Confidence            99887421    2221 11 1    12679999999988887765

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.19  E-value=3.8e-09  Score=90.17  Aligned_cols=165  Identities=19%  Similarity=0.190  Sum_probs=115.9

Q ss_pred             ccccccccCCCCCCCceEEEcCCCCeeEEE-ecCCEEEEEEcCCCCeE-EeeecCCCccccccCCCCCcccCCCcCCeee
Q 019290           23 SKSYQQLQLPGVVGPESLAFDCNGEGPYVG-VSDGRILKWKAANSGWT-EFATTAPHRAREICDGSTNTTLEPLCGRPLG  100 (343)
Q Consensus        23 ~~~~~~~~~~~~~~p~~l~~d~~g~~l~~~-~~~g~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g  100 (343)
                      -+.++++.++.-...++++.+  |+.+|.. ..++.++.||+++.+.. .|..                     .....|
T Consensus        75 gkv~~~~~l~~~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~---------------------~~eG~g  131 (262)
T 3nol_A           75 GKTLQQIELGKRYFGEGISDW--KDKIVGLTWKNGLGFVWNIRNLRQVRSFNY---------------------DGEGWG  131 (262)
T ss_dssp             CCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTCCEEEEEEC---------------------SSCCCC
T ss_pred             CcEEEEEecCCccceeEEEEe--CCEEEEEEeeCCEEEEEECccCcEEEEEEC---------------------CCCceE
Confidence            556677777754456778876  4457755 45789999999886533 3321                     113356


Q ss_pred             EEEeCCCCeEEEEeCCCeEEEEeCCCCeEEEcccc-cCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCC
Q 019290          101 IKFNPVTCDLYIADAYFGLMVVGPNGGQAQQLASS-AGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDR  179 (343)
Q Consensus       101 i~~~~~~~~l~v~~~~~gi~~~d~~~~~~~~~~~~-~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~  179 (343)
                      ++.+  ++.||+++..+.|+.+|+++.++..-... ..+.+...+|.+...  +|++|+....                 
T Consensus       132 lt~d--g~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~--~G~lyan~w~-----------------  190 (262)
T 3nol_A          132 LTHN--DQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV--DGEIFANVWQ-----------------  190 (262)
T ss_dssp             EEEC--SSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE--TTEEEEEETT-----------------
T ss_pred             EecC--CCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE--CCEEEEEEcc-----------------
Confidence            6654  67899997555699999998776543332 233445667777776  3899997754                 


Q ss_pred             CceEEEEeCCCCceEEeecC-------------CCCcceeEEecCCCEEEEEEcCCCeEEEEEcc
Q 019290          180 SGRLLKYDPLKKNVTVMYNG-------------LSFPNGVALSNNNSFLLLAESATLKILRFWLQ  231 (343)
Q Consensus       180 ~~~v~~~d~~~~~~~~~~~~-------------~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~  231 (343)
                      .+.|.++|++++++......             ...+||||++++++.||++.-....++.+.+.
T Consensus       191 ~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp~~~ev~~~  255 (262)
T 3nol_A          191 TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWPKVFEITLT  255 (262)
T ss_dssp             SSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCSEEEEEEEE
T ss_pred             CCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCCceEEEEEe
Confidence            56899999999987543211             13579999999999999999888999887754

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.19  E-value=7.3e-09  Score=93.49  Aligned_cols=204  Identities=13%  Similarity=0.104  Sum_probs=117.8

Q ss_pred             CCCceEEEcCCCCeeEEEe-cCCEEEEEEcCCC-CeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEE
Q 019290           35 VGPESLAFDCNGEGPYVGV-SDGRILKWKAANS-GWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYI  112 (343)
Q Consensus        35 ~~p~~l~~d~~g~~l~~~~-~~g~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v  112 (343)
                      ..|..+++  +|+.+|++. .++.+..|+.... ....+.......      +.+..........+++++++++++.||+
T Consensus       100 ~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~------g~~~~~~~~~~~~~~~~~~spdg~~l~~  171 (361)
T 3scy_A          100 ADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFK------GSGPDKERQTMPHLHCVRITPDGKYLLA  171 (361)
T ss_dssp             SCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECC------CCCSCTTTCSSCCEEEEEECTTSSEEEE
T ss_pred             CCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEcc------CCCCCccccCCCcceEEEECCCCCEEEE
Confidence            46888888  777677554 5778888887532 221110000000      0000000112335688999994446999


Q ss_pred             EeCCC-eEEEEeC--CCC----e-EEEc---ccccCCCCccCcceeEEeCCCCe-EEEEeCCcccccccceeeeeecCCC
Q 019290          113 ADAYF-GLMVVGP--NGG----Q-AQQL---ASSAGGIPFRFTNDLDIDPNTGI-VYFTDSSIYFQRRQYFMSIATGDRS  180 (343)
Q Consensus       113 ~~~~~-gi~~~d~--~~~----~-~~~~---~~~~~~~~~~~~~~i~~d~~dg~-l~v~~~~~~~~~~~~~~~~~~~~~~  180 (343)
                      ++... .+..++.  .++    + +...   ... .......+..+++++ ||+ +|+++..                 .
T Consensus       172 ~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~sp-dg~~l~v~~~~-----------------~  232 (361)
T 3scy_A          172 DDLGTDQIHKFNINPNANADNKEKFLTKGTPEAF-KVAPGSGPRHLIFNS-DGKFAYLINEI-----------------G  232 (361)
T ss_dssp             EETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEE-ECCTTCCEEEEEECT-TSSEEEEEETT-----------------T
T ss_pred             EeCCCCEEEEEEEcCCCCcccccceeecccccce-ecCCCCCCeEEEEcC-CCCEEEEEcCC-----------------C
Confidence            87643 4666654  343    2 2111   000 011124578899999 575 7786643                 4


Q ss_pred             ceEEEEeCCCCceEEee------cCCCCcceeEEecCCCEEEEEEcC-CCeEEEEEccCc-cccccceeeecCCCCCCce
Q 019290          181 GRLLKYDPLKKNVTVMY------NGLSFPNGVALSNNNSFLLLAESA-TLKILRFWLQGE-RTTYTPQLFAEMPRFPDNI  252 (343)
Q Consensus       181 ~~v~~~d~~~~~~~~~~------~~~~~~~~i~~~~d~~~lyv~~~~-~~~i~~~~~~~~-~~~~~~~~~~~~~~~p~~i  252 (343)
                      +.|..|+.++++.+.+.      .....+.++++++||+.||+++.. .+.|.+|+++.. ..+.....+. ....|.++
T Consensus       233 ~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~-~g~~~~~~  311 (361)
T 3scy_A          233 GTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQL-TGIHPRNF  311 (361)
T ss_dssp             CEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEE-CSSCCCEE
T ss_pred             CeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEec-CCCCCceE
Confidence            56777776666654322      122446799999999999999877 788999988621 1101111221 23368899


Q ss_pred             eeCCCCC-EEEEecc
Q 019290          253 KSDSKGE-FWIAMNS  266 (343)
Q Consensus       253 ~~d~~G~-lwi~~~~  266 (343)
                      +++++|+ ||++...
T Consensus       312 ~~spdg~~l~~~~~~  326 (361)
T 3scy_A          312 IITPNGKYLLVACRD  326 (361)
T ss_dssp             EECTTSCEEEEEETT
T ss_pred             EECCCCCEEEEEECC
Confidence            9999997 6666544

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.18  E-value=5.2e-09  Score=96.57  Aligned_cols=240  Identities=10%  Similarity=-0.007  Sum_probs=140.6

Q ss_pred             ccccccccCCCCCCCceEEEcCCCCeeEEEe----------cCCEEEEEEcCCCCeE-EeeecCCCccccccCCCCCccc
Q 019290           23 SKSYQQLQLPGVVGPESLAFDCNGEGPYVGV----------SDGRILKWKAANSGWT-EFATTAPHRAREICDGSTNTTL   91 (343)
Q Consensus        23 ~~~~~~~~~~~~~~p~~l~~d~~g~~l~~~~----------~~g~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~   91 (343)
                      .+.+.+++++.  .| ++++++||+.+|++.          .++.|..+|..+.+.. .+.....             .+
T Consensus       109 ~~vv~~I~vG~--~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~-------------~r  172 (426)
T 3c75_H          109 GRILGMTDGGF--LP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDA-------------PR  172 (426)
T ss_dssp             TEEEEEEEECS--SC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTC-------------CC
T ss_pred             CEEEEEEECCC--CC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCc-------------cc
Confidence            55667777775  68 999999999899765          3567999999886643 3321100             00


Q ss_pred             CCCcCCeeeEEEeCCCCeEEEEeCC--CeEEEEeCCCCeEEEcccccCCCCccCcc----eeEEeCCCCeEEEEeCCc-c
Q 019290           92 EPLCGRPLGIKFNPVTCDLYIADAY--FGLMVVGPNGGQAQQLASSAGGIPFRFTN----DLDIDPNTGIVYFTDSSI-Y  164 (343)
Q Consensus        92 ~~~~~~p~gi~~~~~~~~l~v~~~~--~gi~~~d~~~~~~~~~~~~~~~~~~~~~~----~i~~d~~dg~l~v~~~~~-~  164 (343)
                      ......|+++.++++++.+|+++..  +.|.++|.+++++..-...... ....+.    -+++.+ ||++.+.+... .
T Consensus       173 ~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~-~~~~p~g~~~~v~~~~-dG~~~~V~~~~~~  250 (426)
T 3c75_H          173 FLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC-YHIFPASPTVFYMNCR-DGSLARVDFADGE  250 (426)
T ss_dssp             CCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE-EEEEEEETTEEEEEET-TSSEEEEECCTTC
T ss_pred             cccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc-eeeccCCCcEEEEEcC-CCCEEEEECCCCc
Confidence            0112458999999977789999753  4599999999876543222110 001111    245556 46544433311 0


Q ss_pred             --------cccccc-----------eeeeeecCCCceEEEEeCCCCceEEeec----------CCCCcce---eEEecCC
Q 019290          165 --------FQRRQY-----------FMSIATGDRSGRLLKYDPLKKNVTVMYN----------GLSFPNG---VALSNNN  212 (343)
Q Consensus       165 --------~~~~~~-----------~~~~~~~~~~~~v~~~d~~~~~~~~~~~----------~~~~~~~---i~~~~d~  212 (343)
                              +.....           ...++.....+.|+.+|..++....+..          ....+.+   +++++++
T Consensus       251 v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg  330 (426)
T 3c75_H          251 TKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQS  330 (426)
T ss_dssp             CEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGG
T ss_pred             EEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCC
Confidence                    000000           0111111123567777765444332110          0012333   8999999


Q ss_pred             CEEEEEEcC---------CCeEEEEEccCccccccceeeecCCCCCCceeeCCCCC-EEEEeccCCCccccccccccccc
Q 019290          213 SFLLLAESA---------TLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGE-FWIAMNSARGKIESNKKTAFCEE  282 (343)
Q Consensus       213 ~~lyv~~~~---------~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-lwi~~~~~~~~~~~~~~~~~~~~  282 (343)
                      +.+|++...         .+.|.++|......   ...+ .....|.++.+++||+ +|++.+..               
T Consensus       331 ~rlyVa~~~~~~gthk~~s~~VsVID~~T~kv---v~~I-~vg~~P~gia~spDg~~~lyv~n~~---------------  391 (426)
T 3c75_H          331 DRIYLLVDQRDEWKHKAASRFVVVLNAETGER---INKI-ELGHEIDSINVSQDAEPLLYALSAG---------------  391 (426)
T ss_dssp             TEEEEEEEECCTTCTTSCEEEEEEEETTTCCE---EEEE-EEEEEECEEEECCSSSCEEEEEETT---------------
T ss_pred             CEEEEEecccccccccCCCCEEEEEECCCCeE---EEEE-ECCCCcCeEEEccCCCEEEEEEcCC---------------
Confidence            999998642         35799999875322   1122 2334599999999998 66665531               


Q ss_pred             cCCCcccCCCeEEEECC-CCCEEEEe
Q 019290          283 TAKPWFLRDPVGVKFDV-NGNVVDVL  307 (343)
Q Consensus       283 ~~~~~~~~~~~v~~~d~-~g~~~~~~  307 (343)
                              .+.|..||. .++++..+
T Consensus       392 --------s~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          392 --------TQTLHIYDAATGEELRSV  409 (426)
T ss_dssp             --------TTEEEEEETTTCCEEEEE
T ss_pred             --------CCeEEEEECCCCCEEEEe
Confidence                    358889997 57777665

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.17  E-value=7.2e-09  Score=87.70  Aligned_cols=165  Identities=16%  Similarity=0.156  Sum_probs=116.8

Q ss_pred             ccccccccCCCCCCCceEEEcCCCCeeEE-EecCCEEEEEEcCCCCeE-EeeecCCCccccccCCCCCcccCCCcCCeee
Q 019290           23 SKSYQQLQLPGVVGPESLAFDCNGEGPYV-GVSDGRILKWKAANSGWT-EFATTAPHRAREICDGSTNTTLEPLCGRPLG  100 (343)
Q Consensus        23 ~~~~~~~~~~~~~~p~~l~~d~~g~~l~~-~~~~g~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g  100 (343)
                      -+.++++.+|.-..+++++.+  ++.+|. ...++.++.||+++.+.. .|..                     ...+.|
T Consensus        53 gkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~---------------------~~~Gwg  109 (243)
T 3mbr_X           53 GRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLTPRARFRY---------------------PGEGWA  109 (243)
T ss_dssp             CCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTTEEEEEEEC---------------------SSCCCE
T ss_pred             CCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcCcEEEEEeC---------------------CCCceE
Confidence            556778888865566788876  455774 456889999999875432 3321                     123456


Q ss_pred             EEEeCCCCeEEEEeCCCeEEEEeCCCCeEEEcccc-cCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCC
Q 019290          101 IKFNPVTCDLYIADAYFGLMVVGPNGGQAQQLASS-AGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDR  179 (343)
Q Consensus       101 i~~~~~~~~l~v~~~~~gi~~~d~~~~~~~~~~~~-~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~  179 (343)
                      ++.+  ++.||+++..+.|+.+|+++.++..-... ..+.+...+|.+....  |++|+....                 
T Consensus       110 lt~d--g~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~--G~lyanvw~-----------------  168 (243)
T 3mbr_X          110 LTSD--DSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVN--GELLANVWL-----------------  168 (243)
T ss_dssp             EEEC--SSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEET--TEEEEEETT-----------------
T ss_pred             EeeC--CCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeC--CEEEEEECC-----------------
Confidence            6644  68999998656699999998766543322 2334455678877663  899987654                 


Q ss_pred             CceEEEEeCCCCceEEeec--------------CCCCcceeEEecCCCEEEEEEcCCCeEEEEEcc
Q 019290          180 SGRLLKYDPLKKNVTVMYN--------------GLSFPNGVALSNNNSFLLLAESATLKILRFWLQ  231 (343)
Q Consensus       180 ~~~v~~~d~~~~~~~~~~~--------------~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~  231 (343)
                      ...|.++|++++++.....              ....+||||++++++.||++.-....++.+.+.
T Consensus       169 s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp~~~~v~~~  234 (243)
T 3mbr_X          169 TSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRWPMLYEIRLT  234 (243)
T ss_dssp             TTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTCSEEEEEEEC
T ss_pred             CCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCCCcEEEEEEe
Confidence            5689999999998754321              123579999999999999999888999888764

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.17  E-value=1.3e-08  Score=90.26  Aligned_cols=217  Identities=12%  Similarity=0.046  Sum_probs=130.6

Q ss_pred             CCceEEEcCCCCeeEEEe------------cCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEE
Q 019290           36 GPESLAFDCNGEGPYVGV------------SDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKF  103 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~------------~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~  103 (343)
                      .|.+++++++|+.+|++.            .++.|+.+|..+++......                    ....+.++++
T Consensus        83 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~--------------------~~~~~~~~~~  142 (337)
T 1pby_B           83 SLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE--------------------APRQITMLAW  142 (337)
T ss_dssp             CTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE--------------------CCSSCCCEEE
T ss_pred             cccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEe--------------------CCCCcceeEE
Confidence            689999999998788764            46899999998765432211                    1224678899


Q ss_pred             eCCCCeEEEEeCCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeec------
Q 019290          104 NPVTCDLYIADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATG------  177 (343)
Q Consensus       104 ~~~~~~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~------  177 (343)
                      +++++.||++  ...++.+|.++++.........     ....+++.+++..+|++......-...+.......      
T Consensus       143 s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~-----~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (337)
T 1pby_B          143 ARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQS-----WEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPT  215 (337)
T ss_dssp             CTTSSCEEEE--SSSEEEEETTTTEEEEEECSTT-----TTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGG
T ss_pred             CCCCCEEEEe--CCeEEEEECCCCcEeeeeeccc-----cCCCceeCCCccEEeeeccCCCceeeeeecccccccccccc
Confidence            9855568888  3569999999887654322211     01122445521235554322100000000000000      


Q ss_pred             CCCceEEEEeCCCCceEEe--ecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeC
Q 019290          178 DRSGRLLKYDPLKKNVTVM--YNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSD  255 (343)
Q Consensus       178 ~~~~~v~~~d~~~~~~~~~--~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d  255 (343)
                      .....|+.+|..+++...+  ......+.++++++|++.+|++   .+.|++|++.+...   ...+ .....|.+++++
T Consensus       216 ~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~---~~~v~~~d~~~~~~---~~~~-~~~~~~~~~~~s  288 (337)
T 1pby_B          216 AYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA---YNVLESFDLEKNAS---IKRV-PLPHSYYSVNVS  288 (337)
T ss_dssp             GEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE---ESEEEEEETTTTEE---EEEE-ECSSCCCEEEEC
T ss_pred             ccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe---CCeEEEEECCCCcC---ccee-cCCCceeeEEEC
Confidence            0011588999988776422  1223457789999999999988   47999999865221   1122 233458889999


Q ss_pred             CCCC-EEEEeccCCCccccccccccccccCCCcccCCCeEEEECC-CCCEEEEeeCCC
Q 019290          256 SKGE-FWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDV-NGNVVDVLDGNE  311 (343)
Q Consensus       256 ~~G~-lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~~~~  311 (343)
                      ++|+ +|++. .                        .+.|..+|. .++.+..+..+.
T Consensus       289 ~dg~~l~~~~-~------------------------~~~i~v~d~~~~~~~~~~~~~~  321 (337)
T 1pby_B          289 TDGSTVWLGG-A------------------------LGDLAAYDAETLEKKGQVDLPG  321 (337)
T ss_dssp             TTSCEEEEES-B------------------------SSEEEEEETTTCCEEEEEECGG
T ss_pred             CCCCEEEEEc-C------------------------CCcEEEEECcCCcEEEEEEcCC
Confidence            9996 66653 3                        247888887 577777776543

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.16  E-value=2.4e-08  Score=92.26  Aligned_cols=207  Identities=14%  Similarity=0.083  Sum_probs=134.4

Q ss_pred             CCceEEEcCCCCeeEEEecC---CEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEE
Q 019290           36 GPESLAFDCNGEGPYVGVSD---GRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYI  112 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~---g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v  112 (343)
                      ...++++.|+|+.+.+...+   ..|+.+|..+++...+..                    ....+..+++++++..|++
T Consensus       180 ~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~--------------------~~~~~~~~~~spdg~~la~  239 (415)
T 2hqs_A          180 PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS--------------------FPRHNGAPAFSPDGSKLAF  239 (415)
T ss_dssp             CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEEC--------------------CSSCEEEEEECTTSSEEEE
T ss_pred             cceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeec--------------------CCCcccCEEEcCCCCEEEE
Confidence            45688999999966655544   489999998877655431                    1124567899984445665


Q ss_pred             EeCC---CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCe-EEEEeCCcccccccceeeeeecCCCceEEEEeC
Q 019290          113 ADAY---FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGI-VYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDP  188 (343)
Q Consensus       113 ~~~~---~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~  188 (343)
                      +...   ..|+.+|.++++.+.+....     ..+..+++.+ ||+ |+++...               .+...|+.+|.
T Consensus       240 ~~~~~g~~~i~~~d~~~~~~~~l~~~~-----~~~~~~~~sp-dg~~l~~~s~~---------------~g~~~i~~~d~  298 (415)
T 2hqs_A          240 ALSKTGSLNLYVMDLASGQIRQVTDGR-----SNNTEPTWFP-DSQNLAFTSDQ---------------AGRPQVYKVNI  298 (415)
T ss_dssp             EECTTSSCEEEEEETTTCCEEECCCCS-----SCEEEEEECT-TSSEEEEEECT---------------TSSCEEEEEET
T ss_pred             EEecCCCceEEEEECCCCCEEeCcCCC-----CcccceEECC-CCCEEEEEECC---------------CCCcEEEEEEC
Confidence            5333   24999999988876553211     2466788999 576 5554321               11347999999


Q ss_pred             CCCceEEeecCCCCcceeEEecCCCEEEEEEcC--CCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEE-EEec
Q 019290          189 LKKNVTVMYNGLSFPNGVALSNNNSFLLLAESA--TLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFW-IAMN  265 (343)
Q Consensus       189 ~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lw-i~~~  265 (343)
                      .+++...+.........++++|||+.|+++...  ...|+++++.+    ++...+.... ....++++++|+.. .+..
T Consensus       299 ~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~----~~~~~l~~~~-~~~~~~~spdg~~l~~~s~  373 (415)
T 2hqs_A          299 NGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT----GGVQVLSSTF-LDETPSLAPNGTMVIYSSS  373 (415)
T ss_dssp             TSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTT----CCEEECCCSS-SCEEEEECTTSSEEEEEEE
T ss_pred             CCCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCC----CCEEEecCCC-CcCCeEEcCCCCEEEEEEc
Confidence            888766654444456678999999988887654  35899999876    3323332222 35567889999744 4443


Q ss_pred             cCCCccccccccccccccCCCcccCCCeEEEECCCCCEEEEeeCC
Q 019290          266 SARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGN  310 (343)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~  310 (343)
                      . +..                     ..|+.+|.+++....+...
T Consensus       374 ~-~~~---------------------~~l~~~d~~g~~~~~l~~~  396 (415)
T 2hqs_A          374 Q-GMG---------------------SVLNLVSTDGRFKARLPAT  396 (415)
T ss_dssp             E-TTE---------------------EEEEEEETTSCCEEECCCS
T ss_pred             C-CCc---------------------cEEEEEECCCCcEEEeeCC
Confidence            3 211                     2688888887776666543

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.16  E-value=5.6e-08  Score=93.11  Aligned_cols=230  Identities=15%  Similarity=0.122  Sum_probs=145.3

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      .+.++++.++|+.+.++..++.+..|+.++.....+.                    .....+.++++++++..|..+..
T Consensus       346 ~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~--------------------~~~~~v~~~~~s~dg~~l~~~~~  405 (577)
T 2ymu_A          346 SVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT--------------------GHSSSVRGVAFSPDGQTIASASD  405 (577)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTCCEEEEEE--------------------CCSSCEEEEEECTTSSCEEEEET
T ss_pred             CEEEEEECCCCCEEEEEeCCCEEEEEcCCCCEEEEec--------------------CCCCCeEEEEECCCCCEEEEEeC
Confidence            4568999999998888889999999997654333332                    12234678999984445555544


Q ss_pred             CCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEE
Q 019290          116 YFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTV  195 (343)
Q Consensus       116 ~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~  195 (343)
                      ...|..+|......+.+. ..    ...+..+++.+ |+.+.++...                 .+.|..+|..+.....
T Consensus       406 d~~v~~~~~~~~~~~~~~-~~----~~~v~~~~~s~-d~~~l~~~~~-----------------d~~v~~w~~~~~~~~~  462 (577)
T 2ymu_A          406 DKTVKLWNRNGQLLQTLT-GH----SSSVWGVAFSP-DDQTIASASD-----------------DKTVKLWNRNGQLLQT  462 (577)
T ss_dssp             TSEEEEECTTCCEEEEEE-CC----SSCEEEEEECT-TSSEEEEEET-----------------TSEEEEEETTSCEEEE
T ss_pred             CCEEEEEeCCCCEEEEec-CC----CCCeEEEEECC-CCCEEEEEcC-----------------CCEEEEEECCCCEEEE
Confidence            444888887644443332 11    13467899999 5776664432                 4567788876555555


Q ss_pred             eecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEeccCCCcccccc
Q 019290          196 MYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNSARGKIESNK  275 (343)
Q Consensus       196 ~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~~~~~~~~~~~  275 (343)
                      +.........++++|+++.|.. ...++.|..|+..+.    ..+.+.........++++++|++.++...         
T Consensus       463 ~~~~~~~v~~~~~spd~~~las-~~~d~~i~iw~~~~~----~~~~~~~h~~~v~~l~~s~dg~~l~s~~~---------  528 (577)
T 2ymu_A          463 LTGHSSSVRGVAFSPDGQTIAS-ASDDKTVKLWNRNGQ----LLQTLTGHSSSVRGVAFSPDGQTIASASD---------  528 (577)
T ss_dssp             EECCSSCEEEEEECTTSCEEEE-EETTSEEEEEETTSC----EEEEEECCSSCEEEEEECTTSSCEEEEET---------
T ss_pred             EcCCCCCEEEEEEcCCCCEEEE-EeCCCEEEEEcCCCC----EEEEEeCCCCCEEEEEEcCCCCEEEEEEC---------
Confidence            5555556788999999986554 456789999996552    22233222222456788999987776554         


Q ss_pred             ccccccccCCCcccCCCeEEEECCCCCEEEEeeCCCCCccCCceeEEEe-CCEEEEecCCCCeEEEE
Q 019290          276 KTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEGNTLNSVSEVQEY-GEYLYTGSSVQPYVVVI  341 (343)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~~~~i~~~  341 (343)
                                     .+.|..+|.+++.+..+....    ..+..+... +|+..++......|.+.
T Consensus       529 ---------------dg~v~lwd~~~~~~~~~~~h~----~~v~~~~fs~dg~~l~s~~~D~~i~~W  576 (577)
T 2ymu_A          529 ---------------DKTVKLWNRNGQLLQTLTGHS----SSVWGVAFSPDGQTIASASSDKTVKLW  576 (577)
T ss_dssp             ---------------TSEEEEECTTSCEEEEEECCS----SCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred             ---------------cCEEEEEeCCCCEEEEEcCCC----CCEEEEEEcCCCCEEEEEeCCCEEEEe
Confidence                           346777888888877765432    345555444 55555554444445543

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.14  E-value=9.9e-08  Score=84.32  Aligned_cols=190  Identities=14%  Similarity=0.124  Sum_probs=117.2

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeE-EeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEe
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWT-EFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIAD  114 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~  114 (343)
                      ...++++.++|+.+.++. ++.|..|+..++... .+...               ........+..+++++++..|+++.
T Consensus        53 ~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~---------------~~~~~~~~v~~~~~~~~~~~l~~~~  116 (337)
T 1gxr_A           53 VVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQL---------------DCLNRDNYIRSCKLLPDGCTLIVGG  116 (337)
T ss_dssp             CCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEE---------------ECSCTTSBEEEEEECTTSSEEEEEE
T ss_pred             ceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecc---------------cccCCCCcEEEEEEcCCCCEEEEEc
Confidence            578999999999777776 899999998764311 11000               0001223467899998444566665


Q ss_pred             CCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceE
Q 019290          115 AYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVT  194 (343)
Q Consensus       115 ~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~  194 (343)
                      ....|..+|.++++.........  ....+..+++.+ ++...++...                 .+.|..+|..+++..
T Consensus       117 ~d~~i~~~d~~~~~~~~~~~~~~--~~~~i~~~~~~~-~~~~l~~~~~-----------------dg~v~~~d~~~~~~~  176 (337)
T 1gxr_A          117 EASTLSIWDLAAPTPRIKAELTS--SAPACYALAISP-DSKVCFSCCS-----------------DGNIAVWDLHNQTLV  176 (337)
T ss_dssp             SSSEEEEEECCCC--EEEEEEEC--SSSCEEEEEECT-TSSEEEEEET-----------------TSCEEEEETTTTEEE
T ss_pred             CCCcEEEEECCCCCcceeeeccc--CCCceEEEEECC-CCCEEEEEeC-----------------CCcEEEEeCCCCcee
Confidence            44459999998776332211111  113467889998 4665553322                 457888998776654


Q ss_pred             Eee-cCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEecc
Q 019290          195 VMY-NGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNS  266 (343)
Q Consensus       195 ~~~-~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~~  266 (343)
                      ... ........++++++++.++.+ ..++.|..|++.....   ...+ ........++++++|++.++...
T Consensus       177 ~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~~~d~~~~~~---~~~~-~~~~~v~~~~~s~~~~~l~~~~~  244 (337)
T 1gxr_A          177 RQFQGHTDGASCIDISNDGTKLWTG-GLDNTVRSWDLREGRQ---LQQH-DFTSQIFSLGYCPTGEWLAVGME  244 (337)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEE-ETTSEEEEEETTTTEE---EEEE-ECSSCEEEEEECTTSSEEEEEET
T ss_pred             eeeecccCceEEEEECCCCCEEEEE-ecCCcEEEEECCCCce---Eeee-cCCCceEEEEECCCCCEEEEEcC
Confidence            333 334557889999999876655 4678999999875322   1111 22333456778888877666554

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.14  E-value=1.8e-07  Score=82.33  Aligned_cols=238  Identities=12%  Similarity=0.079  Sum_probs=144.1

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      ...++++.++|+.+.++..++.|..|+..+++......                   .....+..++++++++.|..+..
T Consensus        25 ~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~-------------------~h~~~v~~~~~~~~~~~l~s~~~   85 (312)
T 4ery_A           25 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-------------------GHKLGISDVAWSSDSNLLVSASD   85 (312)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC-------------------CCSSCEEEEEECTTSSEEEEEET
T ss_pred             cEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhc-------------------cCCCceEEEEEcCCCCEEEEECC
Confidence            46789999999988888899999999987765443221                   12234678999984445555544


Q ss_pred             CCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEE
Q 019290          116 YFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTV  195 (343)
Q Consensus       116 ~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~  195 (343)
                      ...|..+|.++++........    ...+..+++.+ ++.+.++...                 .+.|..+|..+++...
T Consensus        86 d~~i~vwd~~~~~~~~~~~~~----~~~v~~~~~~~-~~~~l~s~~~-----------------d~~i~iwd~~~~~~~~  143 (312)
T 4ery_A           86 DKTLKIWDVSSGKCLKTLKGH----SNYVFCCNFNP-QSNLIVSGSF-----------------DESVRIWDVKTGKCLK  143 (312)
T ss_dssp             TSEEEEEETTTCCEEEEEECC----SSCEEEEEECS-SSSEEEEEET-----------------TSCEEEEETTTCCEEE
T ss_pred             CCEEEEEECCCCcEEEEEcCC----CCCEEEEEEcC-CCCEEEEEeC-----------------CCcEEEEECCCCEEEE
Confidence            344889999887654332221    13467888998 4776664432                 4568888987666433


Q ss_pred             -eecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeec-CCCCCCceeeCCCCCEEEEeccCCCcccc
Q 019290          196 -MYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAE-MPRFPDNIKSDSKGEFWIAMNSARGKIES  273 (343)
Q Consensus       196 -~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~G~lwi~~~~~~~~~~~  273 (343)
                       +.........++++++++.++.+ ..++.|..|++.....   ...+.. .......++++++|+..++...       
T Consensus       144 ~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~wd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------  212 (312)
T 4ery_A          144 TLPAHSDPVSAVHFNRDGSLIVSS-SYDGLCRIWDTASGQC---LKTLIDDDNPPVSFVKFSPNGKYILAATL-------  212 (312)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEE-ETTSCEEEEETTTCCE---EEEECCSSCCCEEEEEECTTSSEEEEEET-------
T ss_pred             EecCCCCcEEEEEEcCCCCEEEEE-eCCCcEEEEECCCCce---eeEEeccCCCceEEEEECCCCCEEEEEcC-------
Confidence             33333456788999998866544 5678999999865221   112211 1111234678999987776554       


Q ss_pred             ccccccccccCCCcccCCCeEEEECC-CCCEEEEeeCCCCCccCCceeEEEeCCEEEEecCCCCeEEEEc
Q 019290          274 NKKTAFCEETAKPWFLRDPVGVKFDV-NGNVVDVLDGNEGNTLNSVSEVQEYGEYLYTGSSVQPYVVVIK  342 (343)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~~~~i~~~~  342 (343)
                                       .+.|..+|. +++....+.................++.+.+++.....|.+++
T Consensus       213 -----------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd  265 (312)
T 4ery_A          213 -----------------DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN  265 (312)
T ss_dssp             -----------------TTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEE
T ss_pred             -----------------CCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEE
Confidence                             346667776 4555555543322111111222223455555555555666654

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.13  E-value=2e-07  Score=84.87  Aligned_cols=254  Identities=11%  Similarity=0.032  Sum_probs=142.0

Q ss_pred             ccccccCCCCCCCceEEEcCCCCeeEEEe----------cCCEEEEEEcCCCCeE-EeeecCCCccccccCCCCCcccCC
Q 019290           25 SYQQLQLPGVVGPESLAFDCNGEGPYVGV----------SDGRILKWKAANSGWT-EFATTAPHRAREICDGSTNTTLEP   93 (343)
Q Consensus        25 ~~~~~~~~~~~~p~~l~~d~~g~~l~~~~----------~~g~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~   93 (343)
                      .+.+++.+  ..| ++++++||+.+|+..          .++.|..||..+.+.. .+....             .....
T Consensus        59 ~~~~i~~g--~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~-------------~~~~~  122 (373)
T 2mad_H           59 ILGHVNGG--FLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPD-------------APRFD  122 (373)
T ss_pred             EEEEecCC--CCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCC-------------ccccc
Confidence            34444443  368 999999999899774          2467889998775433 221100             00001


Q ss_pred             CcCCeeeEEEeCCCCeEEEEeCC--CeEEEEeCCCCeEEEc-ccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccc
Q 019290           94 LCGRPLGIKFNPVTCDLYIADAY--FGLMVVGPNGGQAQQL-ASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQY  170 (343)
Q Consensus        94 ~~~~p~gi~~~~~~~~l~v~~~~--~gi~~~d~~~~~~~~~-~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~  170 (343)
                      ....|.+++++++++.||+++..  +.|..+| +++++... ...        +..+.+.+...+.|++...        
T Consensus       123 ~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~--------~~~~~~~~~~~~~~~~~~~--------  185 (373)
T 2mad_H          123 VGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS--------PTCYHIHPGAPSTFYLLCA--------  185 (373)
T ss_pred             cCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCC--------CceEEEEeCCCceEEEEcC--------
Confidence            12357899999977789999743  4599999 98876533 221        1123333322456665543        


Q ss_pred             eeeeeecCCCceEEEEeCCCCceEEeec-----CCCCc--ceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeee
Q 019290          171 FMSIATGDRSGRLLKYDPLKKNVTVMYN-----GLSFP--NGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFA  243 (343)
Q Consensus       171 ~~~~~~~~~~~~v~~~d~~~~~~~~~~~-----~~~~~--~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~  243 (343)
                               .+.+..+|. +++......     ....+  ....+.++++.+|+.. ..+.+++++..+... .....+.
T Consensus       186 ---------dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~v~vid~~~~~~-~v~~~~~  253 (373)
T 2mad_H          186 ---------QGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPV-YSGKILQADISAAGA-TNKAPID  253 (373)
T ss_pred             ---------CCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEc-CCceEEEEeccCCcc-eEeeeee
Confidence                     456777777 555431110     00111  2234455666666665 467899999865321 1011110


Q ss_pred             -------cCCCCCCc---eeeCCCC-CEEEEeccCCCccccccccccccccCCCcccCCCeEEEECCC-CCEEEEeeCCC
Q 019290          244 -------EMPRFPDN---IKSDSKG-EFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVN-GNVVDVLDGNE  311 (343)
Q Consensus       244 -------~~~~~p~~---i~~d~~G-~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~-g~~~~~~~~~~  311 (343)
                             .....|.+   +.++++| ++|++... +...              +-....+.|..+|.+ ++.+..+..+.
T Consensus       254 ~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~-~~~~--------------~~~~~~~~V~VID~~t~~vv~~i~~g~  318 (373)
T 2mad_H          254 ALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSE-QSAW--------------KLHAAAKEVTSVTGLVGQTSSQISLGH  318 (373)
T ss_pred             ecCCcccccceecCceEeEEECCCCCEEEEEecc-CCcc--------------cccCCCCeEEEEECCCCEEEEEEECCC
Confidence                   01113566   7788886 78998653 1000              000002478899985 66667775432


Q ss_pred             CCccCCceeEE--EeCC-EEEEecCCCCeEEEEcC
Q 019290          312 GNTLNSVSEVQ--EYGE-YLYTGSSVQPYVVVIKA  343 (343)
Q Consensus       312 ~~~~~~~~~~~--~~~g-~l~i~~~~~~~i~~~~~  343 (343)
                           .+..+.  .++. .+|+++..++.|.+||.
T Consensus       319 -----~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~  348 (373)
T 2mad_H          319 -----DVDAISVAQDGGPDLYALSAGTEVLHIYDA  348 (373)
T ss_pred             -----CcCeEEECCCCCeEEEEEcCCCCeEEEEEC
Confidence                 122322  2344 57777778999999974

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.13  E-value=1.2e-08  Score=90.89  Aligned_cols=165  Identities=14%  Similarity=0.040  Sum_probs=99.0

Q ss_pred             eEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCCC-
Q 019290           39 SLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYF-  117 (343)
Q Consensus        39 ~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~~-  117 (343)
                      ++++.+++.++.+...++.|+.+|..+++.......                  .....|.+++++++++.+|++.... 
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~------------------~~~~~~~~~~~s~dg~~~~v~~~~~~   65 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVM------------------PDKFGPGTAMMAPDNRTAYVLNNHYG   65 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEEC------------------SSCCSSCEEEECTTSSEEEEEETTTT
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEec------------------CCCCCCceeEECCCCCEEEEEeCCCC
Confidence            456677777556777899999999987654322110                  1112467899998445688886544 


Q ss_pred             eEEEEeCCCCeEEEcccccCC--CCccCcceeEEeCCCCe-EEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceE
Q 019290          118 GLMVVGPNGGQAQQLASSAGG--IPFRFTNDLDIDPNTGI-VYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVT  194 (343)
Q Consensus       118 gi~~~d~~~~~~~~~~~~~~~--~~~~~~~~i~~d~~dg~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~  194 (343)
                      .|+.+|+++++..........  .....+.++++++ ||+ +|++.....  .....+    ....+.|+.+|.++++..
T Consensus        66 ~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~--~~~~~~----~~~~~~i~~~d~~~~~~~  138 (349)
T 1jmx_B           66 DIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISP-DGKEVYATVNPTQ--RLNDHY----VVKPPRLEVFSTADGLEA  138 (349)
T ss_dssp             EEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECT-TSSEEEEEEEEEE--ECSSCE----EECCCEEEEEEGGGGGGB
T ss_pred             cEEEEeCCCCcEEEEEEcccccccccccccceEECC-CCCEEEEEccccc--cccccc----ccCCCeEEEEECCCcccc
Confidence            499999998876543222110  0023478999999 464 666542100  000000    001357899998764321


Q ss_pred             ---EeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290          195 ---VMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQG  232 (343)
Q Consensus       195 ---~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~  232 (343)
                         ........+.+++++++++ +|+..   +.|+++++.+
T Consensus       139 ~~~~~~~~~~~~~~~~~s~dg~-l~~~~---~~i~~~d~~~  175 (349)
T 1jmx_B          139 KPVRTFPMPRQVYLMRAADDGS-LYVAG---PDIYKMDVKT  175 (349)
T ss_dssp             CCSEEEECCSSCCCEEECTTSC-EEEES---SSEEEECTTT
T ss_pred             ceeeeccCCCcccceeECCCCc-EEEcc---CcEEEEeCCC
Confidence               1122223577888999998 88753   3499998764

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.12  E-value=1.1e-08  Score=87.36  Aligned_cols=163  Identities=19%  Similarity=0.245  Sum_probs=114.2

Q ss_pred             ccccccccCCCCCCCceEEEcCCCCeeEE-EecCCEEEEEEcCCCCeE-EeeecCCCccccccCCCCCcccCCCcCCeee
Q 019290           23 SKSYQQLQLPGVVGPESLAFDCNGEGPYV-GVSDGRILKWKAANSGWT-EFATTAPHRAREICDGSTNTTLEPLCGRPLG  100 (343)
Q Consensus        23 ~~~~~~~~~~~~~~p~~l~~d~~g~~l~~-~~~~g~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g  100 (343)
                      -+.++++ ++.-...++++.+.  +.+|. ...++.++.||+++.+.. .|..                     ...+.|
T Consensus        85 gkv~~~~-l~~~~FgeGit~~g--~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~---------------------~~eGwG  140 (268)
T 3nok_A           85 AQPVWME-RLGNIFAEGLASDG--ERLYQLTWTEGLLFTWSGMPPQRERTTRY---------------------SGEGWG  140 (268)
T ss_dssp             SSCSEEE-ECTTCCEEEEEECS--SCEEEEESSSCEEEEEETTTTEEEEEEEC---------------------SSCCCC
T ss_pred             CcEEeEE-CCCCcceeEEEEeC--CEEEEEEccCCEEEEEECCcCcEEEEEeC---------------------CCceeE
Confidence            4556667 77544567788864  34774 456789999999875433 3321                     123467


Q ss_pred             EEEeCCCCeEEEEeCCCeEEEEeCCCCeEEEcccc-cCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCC
Q 019290          101 IKFNPVTCDLYIADAYFGLMVVGPNGGQAQQLASS-AGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDR  179 (343)
Q Consensus       101 i~~~~~~~~l~v~~~~~gi~~~d~~~~~~~~~~~~-~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~  179 (343)
                      ++.+  ++.||+++..+.|+.+|+++.++..-... ..+.+...+|.+....  |++|+....                 
T Consensus       141 Lt~D--g~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~d--G~lyanvw~-----------------  199 (268)
T 3nok_A          141 LCYW--NGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECAN--GVIYANIWH-----------------  199 (268)
T ss_dssp             EEEE--TTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEET--TEEEEEETT-----------------
T ss_pred             EecC--CCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEeC--CEEEEEECC-----------------
Confidence            7766  67999998555699999998776543322 2333455678887773  899987654                 


Q ss_pred             CceEEEEeCCCCceEEeec--------------CCCCcceeEEecCCCEEEEEEcCCCeEEEEEc
Q 019290          180 SGRLLKYDPLKKNVTVMYN--------------GLSFPNGVALSNNNSFLLLAESATLKILRFWL  230 (343)
Q Consensus       180 ~~~v~~~d~~~~~~~~~~~--------------~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~  230 (343)
                      ...|.++|++++++.....              ....+||||++++++.||++.-....+|.+.+
T Consensus       200 s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~Wp~~~ev~~  264 (268)
T 3nok_A          200 SSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLWPRLFEVRL  264 (268)
T ss_dssp             CSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETTCSEEEEEEE
T ss_pred             CCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCCCCceEEEEE
Confidence            5689999999998753221              12357999999999999999988888888765

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=99.10  E-value=3.8e-08  Score=88.14  Aligned_cols=208  Identities=15%  Similarity=0.112  Sum_probs=127.5

Q ss_pred             CCcCCeeeEEEeCCCCeEEEEeC-CCeEEEEeCCCCeEEEcccc--cCCCCccCcceeEEeCC---CCeEEEEeCCcccc
Q 019290           93 PLCGRPLGIKFNPVTCDLYIADA-YFGLMVVGPNGGQAQQLASS--AGGIPFRFTNDLDIDPN---TGIVYFTDSSIYFQ  166 (343)
Q Consensus        93 ~~~~~p~gi~~~~~~~~l~v~~~-~~gi~~~d~~~~~~~~~~~~--~~~~~~~~~~~i~~d~~---dg~l~v~~~~~~~~  166 (343)
                      .....|.+|++.+ +++|||+.. ...|++++.++++...+...  ........+.+|+++|+   ++.||++...    
T Consensus        29 ~gL~~P~~ia~~p-dG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~----  103 (347)
T 3das_A           29 TGLNSPWGLAPLP-GGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTS----  103 (347)
T ss_dssp             CCCSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEEC----
T ss_pred             cCCCCceEEEEcC-CCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEec----
Confidence            3455799999999 889999976 34499999877766544221  11122356899999982   3889996432    


Q ss_pred             cccceeeeeecCCCceEEEEeCCCC--------ceEEeecCC-----CCcceeEEecCCCEEEEEE-------------c
Q 019290          167 RRQYFMSIATGDRSGRLLKYDPLKK--------NVTVMYNGL-----SFPNGVALSNNNSFLLLAE-------------S  220 (343)
Q Consensus       167 ~~~~~~~~~~~~~~~~v~~~d~~~~--------~~~~~~~~~-----~~~~~i~~~~d~~~lyv~~-------------~  220 (343)
                                 ...++|.|+....+        +.+.+....     -....+++++||. ||++.             .
T Consensus       104 -----------~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~-Lyvt~Gd~~~~~~~qd~~~  171 (347)
T 3das_A          104 -----------ASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM-LYAGTGESGDTGLSQDRKS  171 (347)
T ss_dssp             -----------SSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC-EEEECBCTTCGGGTTCTTC
T ss_pred             -----------CCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC-EEEEECCCCCCccccCCCC
Confidence                       01457888865431        122222211     1246699999984 99983             2


Q ss_pred             CCCeEEEEEccCccc----cccceeeecCCCCCCceeeCCCCCEEEEeccCCCccccccccccccccCCCcccCCCeEEE
Q 019290          221 ATLKILRFWLQGERT----TYTPQLFAEMPRFPDNIKSDSKGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVK  296 (343)
Q Consensus       221 ~~~~i~~~~~~~~~~----~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  296 (343)
                      ..++|+|++.++.-.    ....++++..-.-|.++++|++|+||++.+.. ...                    ..|.+
T Consensus       172 ~~G~IlRi~~dG~ip~~nPf~~~~i~a~G~RNp~Gla~dp~G~L~~~d~g~-~~~--------------------deln~  230 (347)
T 3das_A          172 LGGKILRMTPDGEPAPGNPFPGSPVYSYGHRNVQGLAWDDKQRLFASEFGQ-DTW--------------------DELNA  230 (347)
T ss_dssp             STTCEEEECTTSSBCTTCSSTTCCEEEBCCSBCCEEEECTTCCEEEEECCS-SSC--------------------EEEEE
T ss_pred             CCCEEEEEeCCCCccCCCCCCCCeEEeeCCCCcceEEECCCCCEEEEecCC-CCC--------------------ceeeE
Confidence            358999999876310    00223444311128899999999999999862 211                    12222


Q ss_pred             ECCCCC---------------E--EEEeeCCCCCccCCceeEEEeCCEEEEecCCCCeEEEEc
Q 019290          297 FDVNGN---------------V--VDVLDGNEGNTLNSVSEVQEYGEYLYTGSSVQPYVVVIK  342 (343)
Q Consensus       297 ~d~~g~---------------~--~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~~~~i~~~~  342 (343)
                      +.+.+.               .  +..+. +   ....++.+..+.|.+|++.....+|.++.
T Consensus       231 i~~G~nyGwP~~~g~~~~~~~~~P~~~~~-~---~~~ap~G~~~~~g~~~~~~l~~~~l~~v~  289 (347)
T 3das_A          231 IKPGDNYGWPEAEGKGGGSGFHDPVAQWS-T---DEASPSGIAYAEGSVWMAGLRGERLWRIP  289 (347)
T ss_dssp             ECTTCBCCTTTCCSSCCCTTCCCCSEEEC-T---TTCCEEEEEEETTEEEEEESTTCSEEEEE
T ss_pred             EcCCCEecCCcccCCCCCccccCCcEecC-C---CCCCCcceEEEcCceeeccccCCEEEEEE
Confidence            221110               0  11111 0   01256677778999999999999998874

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.10  E-value=6.3e-08  Score=92.97  Aligned_cols=238  Identities=11%  Similarity=-0.023  Sum_probs=146.4

Q ss_pred             CceEEEcCC-CCeeE-EEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEe
Q 019290           37 PESLAFDCN-GEGPY-VGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIAD  114 (343)
Q Consensus        37 p~~l~~d~~-g~~l~-~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~  114 (343)
                      |.......| ++.+| +...++.|..+|..+++...-.                    .....|+++.++++++.+|+++
T Consensus       156 P~~~~~~~d~~~~~~V~~~~~~~V~viD~~t~~v~~~i--------------------~~g~~p~~v~~SpDGr~lyv~~  215 (567)
T 1qks_A          156 PTQQMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVL--------------------DTGYAVHISRLSASGRYLFVIG  215 (567)
T ss_dssp             CSSCCSCCCGGGEEEEEETTTTEEEEEETTTCCEEEEE--------------------ECSSCEEEEEECTTSCEEEEEE
T ss_pred             ccccccccCCCceEEEEeCCCCeEEEEECCCCeEEEEE--------------------eCCCCccceEECCCCCEEEEEc
Confidence            444444333 34455 4556789999999887644221                    1223588999999667899997


Q ss_pred             CCCeEEEEeCC--CCeEEEcccccCCCCccCcceeEEe----CCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeC
Q 019290          115 AYFGLMVVGPN--GGQAQQLASSAGGIPFRFTNDLDID----PNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDP  188 (343)
Q Consensus       115 ~~~gi~~~d~~--~~~~~~~~~~~~~~~~~~~~~i~~d----~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~  188 (343)
                      ....|..+|+.  +++...-  ...+   ..+.+++++    +++..+|+++..                 .+.|..+|.
T Consensus       216 ~dg~V~viD~~~~t~~~v~~--i~~G---~~P~~ia~s~~~~pDGk~l~v~n~~-----------------~~~v~ViD~  273 (567)
T 1qks_A          216 RDGKVNMIDLWMKEPTTVAE--IKIG---SEARSIETSKMEGWEDKYAIAGAYW-----------------PPQYVIMDG  273 (567)
T ss_dssp             TTSEEEEEETTSSSCCEEEE--EECC---SEEEEEEECCSTTCTTTEEEEEEEE-----------------TTEEEEEET
T ss_pred             CCCeEEEEECCCCCCcEeEE--EecC---CCCceeEEccccCCCCCEEEEEEcc-----------------CCeEEEEEC
Confidence            55569999995  5544322  1112   347899999    543468887653                 567888898


Q ss_pred             CCCceEEeec-C-----------CCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCC
Q 019290          189 LKKNVTVMYN-G-----------LSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDS  256 (343)
Q Consensus       189 ~~~~~~~~~~-~-----------~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~  256 (343)
                      .+.+...... .           .....++..++++..++++....+.|+.++...... .....+ ....++.++.+|+
T Consensus       274 ~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~-~~v~~i-~~~~~~~d~~~~p  351 (567)
T 1qks_A          274 ETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNN-LKTTEI-SAERFLHDGGLDG  351 (567)
T ss_dssp             TTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSE-EEEEEE-ECCSSEEEEEECT
T ss_pred             CCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCcc-ceeeee-eccccccCceECC
Confidence            7766543221 1           113456777888888888888889999999765221 111111 1233577888999


Q ss_pred             CCCE-EEEeccCCCccccccccccccccCCCcccCCCeEEEECC-CCCEEEEeeC-CCCCcc-CCceeEEEeCCEEEEec
Q 019290          257 KGEF-WIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDV-NGNVVDVLDG-NEGNTL-NSVSEVQEYGEYLYTGS  332 (343)
Q Consensus       257 ~G~l-wi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~~-~~~~~~-~~~~~~~~~~g~l~i~~  332 (343)
                      +|+. |++.+.                        .+.|..+|. +++++..+.. ...... .......++.+.+|+++
T Consensus       352 dgr~~~va~~~------------------------sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~  407 (567)
T 1qks_A          352 SHRYFITAANA------------------------RNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATS  407 (567)
T ss_dssp             TSCEEEEEEGG------------------------GTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEE
T ss_pred             CCCEEEEEeCC------------------------CCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeC
Confidence            9975 566654                        347778987 4666665543 221111 11121222358899876


Q ss_pred             C-CCCeEEEEc
Q 019290          333 S-VQPYVVVIK  342 (343)
Q Consensus       333 ~-~~~~i~~~~  342 (343)
                      . .++.|.+++
T Consensus       408 ~~g~~~Vsvid  418 (567)
T 1qks_A          408 HMGDDSVALIG  418 (567)
T ss_dssp             BSSSSEEEEEE
T ss_pred             CCCCCeEEEec
Confidence            4 568898886

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.09  E-value=1.5e-07  Score=84.64  Aligned_cols=240  Identities=11%  Similarity=0.013  Sum_probs=141.4

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      ...+++++++|+.++++..++.|..||..++++......                 ......+..+++++++..|+.+..
T Consensus        10 ~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~-----------------~~h~~~v~~~~~~~~~~~l~~~~~   72 (372)
T 1k8k_C           10 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHEL-----------------KEHNGQVTGVDWAPDSNRIVTCGT   72 (372)
T ss_dssp             CCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEE-----------------ECCSSCEEEEEEETTTTEEEEEET
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeee-----------------cCCCCcccEEEEeCCCCEEEEEcC
Confidence            578999999999888888899999999887643222110                 112235678999984445666643


Q ss_pred             CCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCc---
Q 019290          116 YFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKN---  192 (343)
Q Consensus       116 ~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~---  192 (343)
                      ...|..+|.++++.........  ....+..+++.+ ++.++++...                 .+.|..+|...+.   
T Consensus        73 dg~i~vwd~~~~~~~~~~~~~~--~~~~v~~~~~~~-~~~~l~~~~~-----------------d~~v~i~d~~~~~~~~  132 (372)
T 1k8k_C           73 DRNAYVWTLKGRTWKPTLVILR--INRAARCVRWAP-NEKKFAVGSG-----------------SRVISICYFEQENDWW  132 (372)
T ss_dssp             TSCEEEEEEETTEEEEEEECCC--CSSCEEEEEECT-TSSEEEEEET-----------------TSSEEEEEEETTTTEE
T ss_pred             CCeEEEEECCCCeeeeeEEeec--CCCceeEEEECC-CCCEEEEEeC-----------------CCEEEEEEecCCCcce
Confidence            3448889988776443322111  124578899998 4765554322                 3445555554443   


Q ss_pred             -eEEeec-CCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccc--------------ccc-ceeeecCCCCCCceeeC
Q 019290          193 -VTVMYN-GLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERT--------------TYT-PQLFAEMPRFPDNIKSD  255 (343)
Q Consensus       193 -~~~~~~-~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~--------------~~~-~~~~~~~~~~p~~i~~d  255 (343)
                       ...+.. .......+++++++..++.+ ..++.|..|++.....              ... ...+....+....++++
T Consensus       133 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  211 (372)
T 1k8k_C          133 VCKHIKKPIRSTVLSLDWHPNSVLLAAG-SCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFS  211 (372)
T ss_dssp             EEEEECTTCCSCEEEEEECTTSSEEEEE-ETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEEC
T ss_pred             eeeeeecccCCCeeEEEEcCCCCEEEEE-cCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEEC
Confidence             222222 23457889999998866554 4678999999642100              011 11111112224457788


Q ss_pred             CCCCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECC-CCCEEEEeeCCCCCccCCceeEEEe-CCEEEEecC
Q 019290          256 SKGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDV-NGNVVDVLDGNEGNTLNSVSEVQEY-GEYLYTGSS  333 (343)
Q Consensus       256 ~~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~  333 (343)
                      ++|++.++...                        .+.|..+|. +++.+..+.....    .+..+... ++++++++ 
T Consensus       212 ~~~~~l~~~~~------------------------d~~i~i~d~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~-  262 (372)
T 1k8k_C          212 ANGSRVAWVSH------------------------DSTVCLADADKKMAVATLASETL----PLLAVTFITESSLVAAG-  262 (372)
T ss_dssp             SSSSEEEEEET------------------------TTEEEEEEGGGTTEEEEEECSSC----CEEEEEEEETTEEEEEE-
T ss_pred             CCCCEEEEEeC------------------------CCEEEEEECCCCceeEEEccCCC----CeEEEEEecCCCEEEEE-
Confidence            99876666554                        346777886 5777666654322    34444333 66766655 


Q ss_pred             CCCeEEEEc
Q 019290          334 VQPYVVVIK  342 (343)
Q Consensus       334 ~~~~i~~~~  342 (343)
                      ..+.|.+++
T Consensus       263 ~d~~i~i~~  271 (372)
T 1k8k_C          263 HDCFPVLFT  271 (372)
T ss_dssp             TTSSCEEEE
T ss_pred             eCCeEEEEE
Confidence            555665554

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.09  E-value=1.6e-07  Score=89.97  Aligned_cols=201  Identities=15%  Similarity=0.153  Sum_probs=128.9

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      ...++++.+++..+.++..++.|..||.++.....+.                    .....+..+++++++..|..+..
T Consensus       305 ~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~--------------------~~~~~v~~~~~s~~g~~l~~~~~  364 (577)
T 2ymu_A          305 SVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLT--------------------GHSSSVWGVAFSPDGQTIASASD  364 (577)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEEC--------------------CCSSCEEEEEECTTSSEEEEEET
T ss_pred             CeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEe--------------------CCCCCEEEEEECCCCCEEEEEeC
Confidence            4568999999998888888999999998776554432                    12234678899984445555543


Q ss_pred             CCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEE
Q 019290          116 YFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTV  195 (343)
Q Consensus       116 ~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~  195 (343)
                      ...+..++..+.....+. ..    ...+..+++.+ +|+..++...                 .+.|..||........
T Consensus       365 dg~v~~~~~~~~~~~~~~-~~----~~~v~~~~~s~-dg~~l~~~~~-----------------d~~v~~~~~~~~~~~~  421 (577)
T 2ymu_A          365 DKTVKLWNRNGQLLQTLT-GH----SSSVRGVAFSP-DGQTIASASD-----------------DKTVKLWNRNGQLLQT  421 (577)
T ss_dssp             TSEEEEEETTCCEEEEEE-CC----SSCEEEEEECT-TSSCEEEEET-----------------TSEEEEECTTCCEEEE
T ss_pred             CCEEEEEcCCCCEEEEec-CC----CCCeEEEEECC-CCCEEEEEeC-----------------CCEEEEEeCCCCEEEE
Confidence            334778887644443331 11    13478899999 5776654332                 4567788865444444


Q ss_pred             eecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEeccCCCcccccc
Q 019290          196 MYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNSARGKIESNK  275 (343)
Q Consensus       196 ~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~~~~~~~~~~~  275 (343)
                      +........+++++|+++.+..+ ..++.|..|+..+.    ....+.........++++++|++.++...         
T Consensus       422 ~~~~~~~v~~~~~s~d~~~l~~~-~~d~~v~~w~~~~~----~~~~~~~~~~~v~~~~~spd~~~las~~~---------  487 (577)
T 2ymu_A          422 LTGHSSSVWGVAFSPDDQTIASA-SDDKTVKLWNRNGQ----LLQTLTGHSSSVRGVAFSPDGQTIASASD---------  487 (577)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEE-ETTSEEEEEETTSC----EEEEEECCSSCEEEEEECTTSCEEEEEET---------
T ss_pred             ecCCCCCeEEEEECCCCCEEEEE-cCCCEEEEEECCCC----EEEEEcCCCCCEEEEEEcCCCCEEEEEeC---------
Confidence            44444556789999999866554 46789999997552    22222222223456788999988777654         


Q ss_pred             ccccccccCCCcccCCCeEEEECCCCCEEEEee
Q 019290          276 KTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLD  308 (343)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~  308 (343)
                                     .+.|..+|.+++....+.
T Consensus       488 ---------------d~~i~iw~~~~~~~~~~~  505 (577)
T 2ymu_A          488 ---------------DKTVKLWNRNGQLLQTLT  505 (577)
T ss_dssp             ---------------TSEEEEEETTSCEEEEEE
T ss_pred             ---------------CCEEEEEcCCCCEEEEEe
Confidence                           235666677777666554

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.08  E-value=3.5e-08  Score=91.10  Aligned_cols=258  Identities=12%  Similarity=0.025  Sum_probs=135.8

Q ss_pred             CCCCeeEEEecC-----CEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC---
Q 019290           44 CNGEGPYVGVSD-----GRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA---  115 (343)
Q Consensus        44 ~~g~~l~~~~~~-----g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~---  115 (343)
                      ++++.+|+....     +.|..+|+.+.+...-.                    +....| +++++++++.||+++.   
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I--------------------~vG~~P-gia~SpDgk~lyVan~~~~  140 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMT--------------------DGGFLP-HPVAAEDGSFFAQASTVFE  140 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEE--------------------EECSSC-EEEECTTSSCEEEEEEEEE
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEE--------------------ECCCCC-ceEECCCCCEEEEEecccc
Confidence            577778866543     68999999886543211                    122357 9999997778999974   


Q ss_pred             -------CCeEEEEeCCCCeEEEccccc-CCC--CccCcceeEEeCCCCeEEEEeCC--ccccc---ccc--eeeee---
Q 019290          116 -------YFGLMVVGPNGGQAQQLASSA-GGI--PFRFTNDLDIDPNTGIVYFTDSS--IYFQR---RQY--FMSIA---  175 (343)
Q Consensus       116 -------~~gi~~~d~~~~~~~~~~~~~-~~~--~~~~~~~i~~d~~dg~l~v~~~~--~~~~~---~~~--~~~~~---  175 (343)
                             .+.|..+|..+.++..-.... ...  ....+.+++++++..++|+++..  +....   ...  ...+.   
T Consensus       141 ~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g  220 (426)
T 3c75_H          141 RIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD  220 (426)
T ss_dssp             ETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS
T ss_pred             ccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC
Confidence                   234999999988765433221 100  12468899999943469998742  10000   000  00000   


Q ss_pred             -------------ecCCCceEEEEeCCCCceEEe----ecCCCCc--ceeEEecCCCEEEEEEcCCCeEEEEEccCccc-
Q 019290          176 -------------TGDRSGRLLKYDPLKKNVTVM----YNGLSFP--NGVALSNNNSFLLLAESATLKILRFWLQGERT-  235 (343)
Q Consensus       176 -------------~~~~~~~v~~~d~~~~~~~~~----~~~~~~~--~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~-  235 (343)
                                   ...+.+.+..++..++++...    ..-...+  ..+.+.++++.+|+.. ..+.++++|..+... 
T Consensus       221 ~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s-~~g~V~ViD~~~~~~~  299 (426)
T 3c75_H          221 CYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPT-YTGKIFQADLTAEGAT  299 (426)
T ss_dssp             EEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEB-TTSEEEEEEECSSCEE
T ss_pred             ceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEe-CCCcEEEEeccCCceE
Confidence                         001122233333322222110    0000111  2234566777777664 356788888754221 


Q ss_pred             -cccceeee----cCCCCCCc---eeeCCCC-CEEEEeccCCCccccccccccccccCCCcccCCCeEEEECC-CCCEEE
Q 019290          236 -TYTPQLFA----EMPRFPDN---IKSDSKG-EFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDV-NGNVVD  305 (343)
Q Consensus       236 -~~~~~~~~----~~~~~p~~---i~~d~~G-~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~  305 (343)
                       ........    .....|.+   ++++++| ++|++..+ +..-.          +    ....+.|..||. .++.+.
T Consensus       300 v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~-~~~gt----------h----k~~s~~VsVID~~T~kvv~  364 (426)
T 3c75_H          300 FRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQ-RDEWK----------H----KAASRFVVVLNAETGERIN  364 (426)
T ss_dssp             ECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEE-CCTTC----------T----TSCEEEEEEEETTTCCEEE
T ss_pred             EeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecc-ccccc----------c----cCCCCEEEEEECCCCeEEE
Confidence             00000000    00012334   7888875 68888643 10000          0    000236889997 577777


Q ss_pred             EeeCCCCCccCCceeEE--EeCC-EEEEecCCCCeEEEEcC
Q 019290          306 VLDGNEGNTLNSVSEVQ--EYGE-YLYTGSSVQPYVVVIKA  343 (343)
Q Consensus       306 ~~~~~~~~~~~~~~~~~--~~~g-~l~i~~~~~~~i~~~~~  343 (343)
                      .+..+.     .+..+.  .++. .||+++..++.|.+||.
T Consensus       365 ~I~vg~-----~P~gia~spDg~~~lyv~n~~s~~VsVID~  400 (426)
T 3c75_H          365 KIELGH-----EIDSINVSQDAEPLLYALSAGTQTLHIYDA  400 (426)
T ss_dssp             EEEEEE-----EECEEEECCSSSCEEEEEETTTTEEEEEET
T ss_pred             EEECCC-----CcCeEEEccCCCEEEEEEcCCCCeEEEEEC
Confidence            775432     133332  2355 68888889999999984

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.08  E-value=1.4e-07  Score=85.41  Aligned_cols=187  Identities=11%  Similarity=0.076  Sum_probs=105.2

Q ss_pred             eEEEecC--CEEEEE--EcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCCCeEEEEeC
Q 019290           49 PYVGVSD--GRILKW--KAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFGLMVVGP  124 (343)
Q Consensus        49 l~~~~~~--g~i~~~--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~~gi~~~d~  124 (343)
                      +|+++..  ++|+.|  |+.++++..+....                ......|.+++++++++.||+++.. .+..++.
T Consensus         5 ~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~----------------~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~   67 (365)
T 1jof_A            5 LMIGTWTPPGAIFTVQFDDEKLTCKLIKRTE----------------IPQDEPISWMTFDHERKNIYGAAMK-KWSSFAV   67 (365)
T ss_dssp             EEEEESSSSCEEEEEEEETTTTEEEEEEEEE----------------CCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEE
T ss_pred             EEEEEccCCCcEEEEEEECCCCCEEEeeEEc----------------cCCCCCCcEEEECCCCCEEEEEccc-eEEEEEE
Confidence            5666543  466654  56676665543210                0112357789999955568888654 8888887


Q ss_pred             C-CCeEEEcccccCCCCccCcceeEEeCCCCeE-EE--EeCCcccccccceeeeeecC----CCceEEEEeCC-CCceEE
Q 019290          125 N-GGQAQQLASSAGGIPFRFTNDLDIDPNTGIV-YF--TDSSIYFQRRQYFMSIATGD----RSGRLLKYDPL-KKNVTV  195 (343)
Q Consensus       125 ~-~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l-~v--~~~~~~~~~~~~~~~~~~~~----~~~~v~~~d~~-~~~~~~  195 (343)
                      + +++...+......   ..+..+++++ ||+. |+  ++... +.        ..++    ..+.+..|+.+ .++...
T Consensus        68 ~~~g~~~~~~~~~~~---g~~~~~~~sp-dg~~l~~~~~~~~~-~~--------~~~~~~~~~~g~v~v~~~~~~g~~~~  134 (365)
T 1jof_A           68 KSPTEIVHEASHPIG---GHPRANDADT-NTRAIFLLAAKQPP-YA--------VYANPFYKFAGYGNVFSVSETGKLEK  134 (365)
T ss_dssp             EETTEEEEEEEEECC---SSGGGGCTTS-CCEEEEEEECSSTT-CC--------EEEEEESSSCCEEEEEEECTTCCEEE
T ss_pred             CCCCCEEEeeEeecC---CCCccEEECC-CCCEEEEEEecCCc-ce--------eccceeecCCceEEEEccCCCCcCcc
Confidence            6 6766543221111   1266789999 5872 43  22000 00        0000    12334444432 244332


Q ss_pred             -ee----cCCCCcceeEEecCCCEEEEEEcCCCeEEEEEcc-Cccccccceeee-cC-CCCCCceeeCCCCC-EEEEecc
Q 019290          196 -MY----NGLSFPNGVALSNNNSFLLLAESATLKILRFWLQ-GERTTYTPQLFA-EM-PRFPDNIKSDSKGE-FWIAMNS  266 (343)
Q Consensus       196 -~~----~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~-~~~~~~~~~~~~-~~-~~~p~~i~~d~~G~-lwi~~~~  266 (343)
                       +.    .....+.+++++|||+.+|+++...+.|++|+++ +... .....+. .. ...|.+++++++|+ +|++...
T Consensus       135 ~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~-~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~  213 (365)
T 1jof_A          135 NVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEV-ELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEA  213 (365)
T ss_dssp             EEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCE-EEEEEEECSSTTCCEEEEEECTTSSEEEEEETT
T ss_pred             eEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCE-EEeeeEecCCCCCCCCEeEECCCCCEEEEEECC
Confidence             21    2346789999999999999998777899999987 3211 1111111 11 23478899999995 6666543

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.07  E-value=4.5e-07  Score=80.59  Aligned_cols=234  Identities=12%  Similarity=0.083  Sum_probs=145.9

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      ...++.+.+++..+.++..++.|..||..+++......                   ........+++++++..|..+..
T Consensus        82 ~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~-------------------~~~~~~~~~~~spdg~~l~~g~~  142 (321)
T 3ow8_A           82 GVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSID-------------------AGPVDAWTLAFSPDSQYLATGTH  142 (321)
T ss_dssp             CEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE-------------------CCTTCCCCEEECTTSSEEEEECT
T ss_pred             CEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEe-------------------CCCccEEEEEECCCCCEEEEEcC
Confidence            46688899999978888899999999987764332211                   11123457889984445555533


Q ss_pred             CCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEE
Q 019290          116 YFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTV  195 (343)
Q Consensus       116 ~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~  195 (343)
                      ...+..++.++++........    ...+..+++.+ +|++.++...                 .+.|..+|..+++...
T Consensus       143 dg~v~i~~~~~~~~~~~~~~~----~~~v~~~~~sp-dg~~lasg~~-----------------dg~i~iwd~~~~~~~~  200 (321)
T 3ow8_A          143 VGKVNIFGVESGKKEYSLDTR----GKFILSIAYSP-DGKYLASGAI-----------------DGIINIFDIATGKLLH  200 (321)
T ss_dssp             TSEEEEEETTTCSEEEEEECS----SSCEEEEEECT-TSSEEEEEET-----------------TSCEEEEETTTTEEEE
T ss_pred             CCcEEEEEcCCCceeEEecCC----CceEEEEEECC-CCCEEEEEcC-----------------CCeEEEEECCCCcEEE
Confidence            344889999877654332211    13477899999 5876664432                 4678889988776543


Q ss_pred             ee-cCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEeccCCCccccc
Q 019290          196 MY-NGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNSARGKIESN  274 (343)
Q Consensus       196 ~~-~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~~~~~~~~~~  274 (343)
                      .. ........++++|+++.| ++...++.|..|++.....   ...+.........+++.++|++.++...        
T Consensus       201 ~~~~h~~~v~~l~~spd~~~l-~s~s~dg~i~iwd~~~~~~---~~~~~~h~~~v~~~~~sp~~~~l~s~s~--------  268 (321)
T 3ow8_A          201 TLEGHAMPIRSLTFSPDSQLL-VTASDDGYIKIYDVQHANL---AGTLSGHASWVLNVAFCPDDTHFVSSSS--------  268 (321)
T ss_dssp             EECCCSSCCCEEEECTTSCEE-EEECTTSCEEEEETTTCCE---EEEECCCSSCEEEEEECTTSSEEEEEET--------
T ss_pred             EEcccCCceeEEEEcCCCCEE-EEEcCCCeEEEEECCCcce---eEEEcCCCCceEEEEECCCCCEEEEEeC--------
Confidence            33 333456889999998855 4556688999999865221   1122111222345778999987777655        


Q ss_pred             cccccccccCCCcccCCCeEEEECC-CCCEEEEeeCCCCCccCCceeEEEe-CCEEEEecCCCCeEEEEc
Q 019290          275 KKTAFCEETAKPWFLRDPVGVKFDV-NGNVVDVLDGNEGNTLNSVSEVQEY-GEYLYTGSSVQPYVVVIK  342 (343)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~~~~i~~~~  342 (343)
                                      .+.|..+|. .++.+..+....    ..+..+... +++..++......|.+++
T Consensus       269 ----------------D~~v~iwd~~~~~~~~~~~~h~----~~v~~v~~s~~g~~l~s~~~d~~i~vwd  318 (321)
T 3ow8_A          269 ----------------DKSVKVWDVGTRTCVHTFFDHQ----DQVWGVKYNGNGSKIVSVGDDQEIHIYD  318 (321)
T ss_dssp             ----------------TSCEEEEETTTTEEEEEECCCS----SCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred             ----------------CCcEEEEeCCCCEEEEEEcCCC----CcEEEEEECCCCCEEEEEeCCCeEEEEe
Confidence                            346667776 455555554322    245555444 555555555566676665

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.05  E-value=1.8e-07  Score=86.45  Aligned_cols=164  Identities=15%  Similarity=0.102  Sum_probs=106.2

Q ss_pred             CEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCCC---eEEEEeCCCCeEEEc
Q 019290           56 GRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYF---GLMVVGPNGGQAQQL  132 (343)
Q Consensus        56 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~~---gi~~~d~~~~~~~~~  132 (343)
                      +.|+.+|.+++....+..                    ....+..+++++++..|.++....   .|+.+|.++++.+.+
T Consensus       159 ~~i~i~d~~g~~~~~l~~--------------------~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l  218 (415)
T 2hqs_A          159 YELRVSDYDGYNQFVVHR--------------------SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV  218 (415)
T ss_dssp             EEEEEEETTSCSCEEEEE--------------------ESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEE
T ss_pred             ceEEEEcCCCCCCEEEeC--------------------CCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEe
Confidence            689999987765555432                    112456788998555676665443   699999998887654


Q ss_pred             ccccCCCCccCcceeEEeCCCCe-EEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEeecCCCCcceeEEecC
Q 019290          133 ASSAGGIPFRFTNDLDIDPNTGI-VYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVALSNN  211 (343)
Q Consensus       133 ~~~~~~~~~~~~~~i~~d~~dg~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~i~~~~d  211 (343)
                      ....     ..+..+++.| ||+ |+++...               .....|+.+|..+++...+.........++++||
T Consensus       219 ~~~~-----~~~~~~~~sp-dg~~la~~~~~---------------~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spd  277 (415)
T 2hqs_A          219 ASFP-----RHNGAPAFSP-DGSKLAFALSK---------------TGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPD  277 (415)
T ss_dssp             ECCS-----SCEEEEEECT-TSSEEEEEECT---------------TSSCEEEEEETTTCCEEECCCCSSCEEEEEECTT
T ss_pred             ecCC-----CcccCEEEcC-CCCEEEEEEec---------------CCCceEEEEECCCCCEEeCcCCCCcccceEECCC
Confidence            3211     2467889999 576 5544432               1134699999988887766555455678899999


Q ss_pred             CCEEEEEEcCCC--eEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEe
Q 019290          212 NSFLLLAESATL--KILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAM  264 (343)
Q Consensus       212 ~~~lyv~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~  264 (343)
                      ++.++++....+  .|+++++.+    ++...+.........++++++|+..+..
T Consensus       278 g~~l~~~s~~~g~~~i~~~d~~~----~~~~~l~~~~~~~~~~~~spdG~~l~~~  328 (415)
T 2hqs_A          278 SQNLAFTSDQAGRPQVYKVNING----GAPQRITWEGSQNQDADVSSDGKFMVMV  328 (415)
T ss_dssp             SSEEEEEECTTSSCEEEEEETTS----SCCEECCCSSSEEEEEEECTTSSEEEEE
T ss_pred             CCEEEEEECCCCCcEEEEEECCC----CCEEEEecCCCcccCeEECCCCCEEEEE
Confidence            998887764333  799999876    2222222222223356788999755443

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.05  E-value=2e-07  Score=84.70  Aligned_cols=257  Identities=12%  Similarity=0.037  Sum_probs=138.5

Q ss_pred             ccccccccCCCCCCCceEEEcCCCCeeEEEe----------cCCEEEEEEcCCCCeE-EeeecCCCccccccCCCCCccc
Q 019290           23 SKSYQQLQLPGVVGPESLAFDCNGEGPYVGV----------SDGRILKWKAANSGWT-EFATTAPHRAREICDGSTNTTL   91 (343)
Q Consensus        23 ~~~~~~~~~~~~~~p~~l~~d~~g~~l~~~~----------~~g~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~   91 (343)
                      .+.+.++..+.  .|+ +++++||+.+|++.          .++.|..+|..+.+.. .+.....             ..
T Consensus        69 ~~v~~~I~vG~--~P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g-------------~r  132 (386)
T 3sjl_D           69 GRVIGMIDGGF--LPN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDA-------------PR  132 (386)
T ss_dssp             TEEEEEEEECS--SCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTC-------------CC
T ss_pred             CeEEEEEECCC--CCc-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCc-------------cc
Confidence            45566676664  576 99999999898764          2456999999887643 2321000             00


Q ss_pred             CCCcCCeeeEEEeCCCCeEEEEeC--CCeEEEEeCCCCeEEEcccccCCCCccCcce----eEEeCCCCeEEEEeCCccc
Q 019290           92 EPLCGRPLGIKFNPVTCDLYIADA--YFGLMVVGPNGGQAQQLASSAGGIPFRFTND----LDIDPNTGIVYFTDSSIYF  165 (343)
Q Consensus        92 ~~~~~~p~gi~~~~~~~~l~v~~~--~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~----i~~d~~dg~l~v~~~~~~~  165 (343)
                      ......|.++.++++++.+|+++.  .+.|..+|.+++++..-...... ....+.+    +++.+ ||++.+.+...  
T Consensus       133 ~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~-~~~~P~g~~~~~~~~~-DG~~~~v~~~~--  208 (386)
T 3sjl_D          133 FLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC-YHIFPTAPDTFFMHCR-DGSLAKVAFGT--  208 (386)
T ss_dssp             CCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE-EEEEEEETTEEEEEET-TSCEEEEECCS--
T ss_pred             cccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc-ceeecCCCceeEEECC-CCCEEEEECCC--
Confidence            112236889999997778999975  35699999999887644322110 0011111    13334 34433332210  


Q ss_pred             ccccceeeeeecCCCceEEEEeCCCCceEEeecCCCCc--ceeEEe-cCCCEEEEEEcCCCeEEEEEccCccc--cccce
Q 019290          166 QRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSFP--NGVALS-NNNSFLLLAESATLKILRFWLQGERT--TYTPQ  240 (343)
Q Consensus       166 ~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~--~~i~~~-~d~~~lyv~~~~~~~i~~~~~~~~~~--~~~~~  240 (343)
                                    .+.+..-.  +    ........+  +..++. ++|+.+|++  .++.|+.+|..+...  .....
T Consensus       209 --------------~g~v~~~~--~----~~~~~~~~~~~~~~~~~~~dG~~~~vs--~~g~V~v~d~~~~~~~v~~~~~  266 (386)
T 3sjl_D          209 --------------EGTPEITH--T----EVFHPEDEFLINHPAYSQKAGRLVWPT--YTGKIHQIDLSSGDAKFLPAVE  266 (386)
T ss_dssp             --------------SSCCEEEE--C----CCCSCTTSCBCSCCEEETTTTEEEEEB--TTSEEEEEECTTSSCEECCCEE
T ss_pred             --------------CCeEEEee--c----ceeccccccccccceeEcCCCcEEEEe--CCCEEEEEECCCCcceeeccee
Confidence                          11221000  0    011000111  223454 566545544  368999999875321  01111


Q ss_pred             eeec---CCC-CCCc---eeeCCCC-CEEEEeccCCCccccccccccccccCCCcc--cCCCeEEEECC-CCCEEEEeeC
Q 019290          241 LFAE---MPR-FPDN---IKSDSKG-EFWIAMNSARGKIESNKKTAFCEETAKPWF--LRDPVGVKFDV-NGNVVDVLDG  309 (343)
Q Consensus       241 ~~~~---~~~-~p~~---i~~d~~G-~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~d~-~g~~~~~~~~  309 (343)
                      ++..   ..+ .|.+   +++++++ ++|++.+....                 |.  .+.+.|..+|. .++++..+..
T Consensus       267 ~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~-----------------~~hk~~~~~V~viD~~t~kv~~~i~v  329 (386)
T 3sjl_D          267 ALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDE-----------------WRHKTASRFVVVLDAKTGERLAKFEM  329 (386)
T ss_dssp             SSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCT-----------------TCTTSCEEEEEEEETTTCCEEEEEEE
T ss_pred             ccccccccccccCCCcceeeECCCCCeEEEEeccccc-----------------cccCCCCCEEEEEECCCCeEEEEEEC
Confidence            1111   011 2333   6778765 78998753110                 00  01247899997 5777777765


Q ss_pred             CCCCccCCceeEEEe-CC--EEEEecCCCCeEEEEcC
Q 019290          310 NEGNTLNSVSEVQEY-GE--YLYTGSSVQPYVVVIKA  343 (343)
Q Consensus       310 ~~~~~~~~~~~~~~~-~g--~l~i~~~~~~~i~~~~~  343 (343)
                      +.     .+..+..+ ++  .||+++..++.|.+||+
T Consensus       330 g~-----~~~~lavs~D~~~~ly~tn~~~~~VsViD~  361 (386)
T 3sjl_D          330 GH-----EIDSINVSQDEKPLLYALSTGDKTLYIHDA  361 (386)
T ss_dssp             EE-----EECEEEECSSSSCEEEEEETTTTEEEEEET
T ss_pred             CC-----CcceEEECCCCCeEEEEEcCCCCeEEEEEC
Confidence            32     23233332 33  68888988999999974

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=99.04  E-value=2.2e-08  Score=90.52  Aligned_cols=213  Identities=10%  Similarity=0.138  Sum_probs=112.7

Q ss_pred             CCceEEEcCC---CCeeEEEe-c-------CCEEEEEEcCCC--CeE---EeeecCCCccccccCCCCCcccCCCcCCee
Q 019290           36 GPESLAFDCN---GEGPYVGV-S-------DGRILKWKAANS--GWT---EFATTAPHRAREICDGSTNTTLEPLCGRPL   99 (343)
Q Consensus        36 ~p~~l~~d~~---g~~l~~~~-~-------~g~i~~~d~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~   99 (343)
                      .|.+|+++++   +..+|+.. .       ..+|.+++.+..  .+.   .+.....             ......-.+.
T Consensus        67 g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p-------------~~~~~~h~~~  133 (353)
T 2g8s_A           67 GLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMP-------------KLSTGNHFGG  133 (353)
T ss_dssp             SEEEEEECTTHHHHCEEEEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSS-------------CCBSSSCCCC
T ss_pred             CceeEEECCCCCCCCEEEEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECC-------------CCCCCcccCc
Confidence            5789999995   44467553 2       357998876532  222   1211000             0001112356


Q ss_pred             eEEEeCCCCeEEEEeCC--------------CeEEEEeCCCCeEEE---ccc------ccCCCCccCcceeEEeCCCCeE
Q 019290          100 GIKFNPVTCDLYIADAY--------------FGLMVVGPNGGQAQQ---LAS------SAGGIPFRFTNDLDIDPNTGIV  156 (343)
Q Consensus       100 gi~~~~~~~~l~v~~~~--------------~gi~~~d~~~~~~~~---~~~------~~~~~~~~~~~~i~~d~~dg~l  156 (343)
                      +|++++ ++.||++...              ..|+++++++. +..   +..      ..-...+..+.++++|+.+|+|
T Consensus       134 ~l~~~p-dG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~-~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l  211 (353)
T 2g8s_A          134 RLVFDG-KGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGE-IPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNAL  211 (353)
T ss_dssp             CEEECS-SSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSC-CCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEE
T ss_pred             cEEECC-CCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCC-CCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCE
Confidence            899999 8899999532              24999998743 100   000      0000123458899999944999


Q ss_pred             EEEeCCcccccccceeeeeecCCCc--eEE---EEeC----------CCCce--EEeecCCCCcceeEEecC------CC
Q 019290          157 YFTDSSIYFQRRQYFMSIATGDRSG--RLL---KYDP----------LKKNV--TVMYNGLSFPNGVALSNN------NS  213 (343)
Q Consensus       157 ~v~~~~~~~~~~~~~~~~~~~~~~~--~v~---~~d~----------~~~~~--~~~~~~~~~~~~i~~~~d------~~  213 (343)
                      |+++.....  .+....+..+...+  ...   .|+.          ..+-.  .........+.++++...      ..
T Consensus       212 ~~~d~g~~~--~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g  289 (353)
T 2g8s_A          212 WLNEHGPRG--GDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQ  289 (353)
T ss_dssp             EEEEECSBS--CEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTT
T ss_pred             EEEecCCCC--CcEEeEeccCCcCCCCCccCCCCCCCCccCcccCCCCCCccCCeEEeCCCcCcceeEEECCccCcccCC
Confidence            999865210  00000000000000  000   0000          00000  001112235788888742      24


Q ss_pred             EEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEec
Q 019290          214 FLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMN  265 (343)
Q Consensus       214 ~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~  265 (343)
                      .+|+++...++|+++++++.........+....+.|.++++++||.||+++.
T Consensus       290 ~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td  341 (353)
T 2g8s_A          290 KLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTD  341 (353)
T ss_dssp             EEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEEC
T ss_pred             cEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEEe
Confidence            6899999999999999875322112112222334688999999999999864

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.03  E-value=1.5e-07  Score=86.33  Aligned_cols=229  Identities=9%  Similarity=0.055  Sum_probs=130.7

Q ss_pred             ccccccccCC-CCCCCceEEE-----------c--CCCCeeEE-EecCCEEEEEEcCCC--CeEEeeecCCCccccccCC
Q 019290           23 SKSYQQLQLP-GVVGPESLAF-----------D--CNGEGPYV-GVSDGRILKWKAANS--GWTEFATTAPHRAREICDG   85 (343)
Q Consensus        23 ~~~~~~~~~~-~~~~p~~l~~-----------d--~~g~~l~~-~~~~g~i~~~d~~~~--~~~~~~~~~~~~~~~~~~~   85 (343)
                      .+.+.++++| ....++..-+           .  .+++.+|+ +...++|+.+|..+.  +.+.+.....      +  
T Consensus        58 ~~vi~~~~~p~~gde~HH~gwn~css~~~~~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~------~--  129 (462)
T 2ece_A           58 SKIVHKVELPYINDELHHFGWNACSSALCPNGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEP------E--  129 (462)
T ss_dssp             TSEEEEEECSSSCCCBCCCEESCCGGGGSTTCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECH------H--
T ss_pred             ceEEEEEECCCCCCcccccchhhhhhhcccccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeech------h--
Confidence            5566777888 3334555544           5  67787775 456789999997542  2222211000      0  


Q ss_pred             CCCccc-CCCcCCeeeEEEeCCCCeEEEEeCCC-------eEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEE
Q 019290           86 STNTTL-EPLCGRPLGIKFNPVTCDLYIADAYF-------GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVY  157 (343)
Q Consensus        86 ~~~~~~-~~~~~~p~gi~~~~~~~~l~v~~~~~-------gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~  157 (343)
                         +.. ......|+++...+ ++ +||+..++       ++..+|.++.++..-.... ..+.....++.+.+..+.++
T Consensus       130 ---~~~~~~g~s~Ph~~~~~p-dG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~-~~~~~~~Yd~~~~p~~~~mv  203 (462)
T 2ece_A          130 ---EVKKVSGYSRLHTVHCGP-DA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEID-RGDQYLAYDFWWNLPNEVLV  203 (462)
T ss_dssp             ---HHHHHHCEEEEEEEEECS-SC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSB-CTTCCCCCCEEEETTTTEEE
T ss_pred             ---hcccccCCCcccceeECC-Ce-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccC-CCCccccceEEECCCCCEEE
Confidence               000 01123689999998 67 99875443       6999999988876543322 12234566888888434455


Q ss_pred             EEeCCccccc-ccceeeeeecCCCceEEEEeCCCCceEEeecC---CCCcceeEE--ecCCCEEEEEEc-----CCCeEE
Q 019290          158 FTDSSIYFQR-RQYFMSIATGDRSGRLLKYDPLKKNVTVMYNG---LSFPNGVAL--SNNNSFLLLAES-----ATLKIL  226 (343)
Q Consensus       158 v~~~~~~~~~-~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~---~~~~~~i~~--~~d~~~lyv~~~-----~~~~i~  226 (343)
                      .++.+.-..+ ..+.....++....+|..||.++++...-..-   ...|..+.+  +|+++++|++..     .++.|+
T Consensus       204 sS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~  283 (462)
T 2ece_A          204 SSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIW  283 (462)
T ss_dssp             ECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEE
T ss_pred             EccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEE
Confidence            5442200000 00000000012256799999887654322211   235667766  899999999988     888999


Q ss_pred             EEEccCccccccceee--ec------C----------CCCCCceeeCCCCC-EEEEecc
Q 019290          227 RFWLQGERTTYTPQLF--AE------M----------PRFPDNIKSDSKGE-FWIAMNS  266 (343)
Q Consensus       227 ~~~~~~~~~~~~~~~~--~~------~----------~~~p~~i~~d~~G~-lwi~~~~  266 (343)
                      +|..++. .....+.+  ..      +          .+.|.+|.+++||+ ||++++.
T Consensus       284 v~~~d~g-~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg  341 (462)
T 2ece_A          284 LWFYEDG-KWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWG  341 (462)
T ss_dssp             EEEEETT-EEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETT
T ss_pred             EEEecCC-ceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCC
Confidence            8776642 11111111  00      0          24688899999995 7888776

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=98.99  E-value=2.2e-07  Score=80.23  Aligned_cols=183  Identities=14%  Similarity=0.096  Sum_probs=113.5

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCC-CCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEe
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAAN-SGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIAD  114 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~  114 (343)
                      .+.+++++++|+.++++ .++.|+.+|..+ ++...+...                  .....+..+++++++..|+++.
T Consensus        43 ~v~~~~~spdg~~l~~~-~~~~i~~~d~~~~~~~~~~~~~------------------~~~~~~~~~~~spdg~~l~~~~  103 (297)
T 2ojh_A           43 LFEAPNWSPDGKYLLLN-SEGLLYRLSLAGDPSPEKVDTG------------------FATICNNDHGISPDGALYAISD  103 (297)
T ss_dssp             CCEEEEECTTSSEEEEE-ETTEEEEEESSSCCSCEECCCT------------------TCCCBCSCCEECTTSSEEEEEE
T ss_pred             ceEeeEECCCCCEEEEE-cCCeEEEEeCCCCCCceEeccc------------------cccccccceEECCCCCEEEEEE
Confidence            57899999999966655 478999999987 665543210                  1112356788998555666664


Q ss_pred             C----CCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCe-EEEEeCCcccccccceeeeeecCCCceEEEEeCC
Q 019290          115 A----YFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGI-VYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPL  189 (343)
Q Consensus       115 ~----~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~  189 (343)
                      .    ...|+.++.++++.+.+...      ..+..+++.+ ||+ ++++...               .....||.++..
T Consensus       104 ~~~~~~~~l~~~~~~~~~~~~~~~~------~~~~~~~~sp-dg~~l~~~~~~---------------~~~~~l~~~~~~  161 (297)
T 2ojh_A          104 KVEFGKSAIYLLPSTGGTPRLMTKN------LPSYWHGWSP-DGKSFTYCGIR---------------DQVFDIYSMDID  161 (297)
T ss_dssp             CTTTSSCEEEEEETTCCCCEECCSS------SSEEEEEECT-TSSEEEEEEEE---------------TTEEEEEEEETT
T ss_pred             eCCCCcceEEEEECCCCceEEeecC------CCccceEECC-CCCEEEEEECC---------------CCceEEEEEECC
Confidence            2    24599999887776554321      1256778888 465 5543321               112368888887


Q ss_pred             CCceEEeecCCCCcceeEEecCCCEEEEEEcCC--CeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEE
Q 019290          190 KKNVTVMYNGLSFPNGVALSNNNSFLLLAESAT--LKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIA  263 (343)
Q Consensus       190 ~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~  263 (343)
                      +++...+.........++++++++.++++....  ..||.++..+    .....+.........+.++++|+..+.
T Consensus       162 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~----~~~~~~~~~~~~~~~~~~s~dg~~l~~  233 (297)
T 2ojh_A          162 SGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDG----SSVERITDSAYGDWFPHPSPSGDKVVF  233 (297)
T ss_dssp             TCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS----SCEEECCCCSEEEEEEEECTTSSEEEE
T ss_pred             CCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCC----CCcEEEecCCcccCCeEECCCCCEEEE
Confidence            777766655555678899999999888775433  4555555443    222222221222334678899975443

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=98.99  E-value=1.8e-07  Score=82.48  Aligned_cols=197  Identities=12%  Similarity=0.172  Sum_probs=126.5

Q ss_pred             CEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEe---CC-CeEEEEeCCCCeEEE
Q 019290           56 GRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIAD---AY-FGLMVVGPNGGQAQQ  131 (343)
Q Consensus        56 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~---~~-~gi~~~d~~~~~~~~  131 (343)
                      ..|++++.++++...+..                    .    .+..+.++++.||+++   .. ..|++++.++...+.
T Consensus        88 ~~Iy~i~~dg~~~~~l~~--------------------~----~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~  143 (302)
T 3s25_A           88 NSLCRIKRNGHGSTVLDP--------------------D----PCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKK  143 (302)
T ss_dssp             EEEEEEETTSCCCEEEEC--------------------S----CEEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEE
T ss_pred             CeEEEEeCCCCcceEeec--------------------C----CccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEE
Confidence            579999988876555531                    1    1223344478999987   23 349999998766665


Q ss_pred             cccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEeecCCCCcceeEEecC
Q 019290          132 LASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVALSNN  211 (343)
Q Consensus       132 ~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~i~~~~d  211 (343)
                      +.....       ..+..+.  +.||+++.+                 ...|++.+.+++..+++..+   +..+.+.|+
T Consensus       144 lt~~~~-------~~~~~~g--~~iy~t~~g-----------------~~~Iy~~~l~g~~~~~l~~~---~~~~~~~P~  194 (302)
T 3s25_A          144 IKNHYL-------FTCNTSD--RYFYYNNPK-----------------NGQLYRYDTASQSEALFYDC---NCYKPVVLD  194 (302)
T ss_dssp             EESSCC-------CCSEEET--TEEEEECTT-----------------TCCEEEEETTTTEEEEEECS---CEEEEEEEE
T ss_pred             EeCCCc-------eEeeEEC--CEEEEEeCC-----------------CceEEEEECCCCCEEEEeCC---Cccceeeec
Confidence            543211       1233443  689998764                 45799999887776666432   333456789


Q ss_pred             CCEEEEEEcCC-CeEEEEEccCccccccceeeecCCCCCCceeeCCCC-CEEEEeccCCCccccccccccccccCCCccc
Q 019290          212 NSFLLLAESAT-LKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKG-EFWIAMNSARGKIESNKKTAFCEETAKPWFL  289 (343)
Q Consensus       212 ~~~lyv~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G-~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (343)
                      ++.||+++... ..|++.++++    ...+++.... .   ..++++| .||.+....                      
T Consensus       195 g~~iy~t~~~~~~~I~~~~ldG----~~~~~Lt~~~-~---~~~~~~g~~Iy~~~~~~----------------------  244 (302)
T 3s25_A          195 DTNVYYMDVNRDNAIVHVNINN----PNPVVLTEAN-I---EHYNVYGSLIFYQRGGD----------------------  244 (302)
T ss_dssp             TTEEEEEEGGGTTEEEEECSSS----CCCEECSCSC-E---EEEEEETTEEEEEECSS----------------------
T ss_pred             CCEEEEEEcCCCcEEEEEECCC----CCeEEEeCCC-c---ceEEECCCEEEEEECCC----------------------
Confidence            99999998643 5899999987    4444443211 1   2356655 566664331                      


Q ss_pred             CCCeEEEECCCCCEEEEeeCCCCCccCCceeEEEeCCEEEEecCCCCeEEEEc
Q 019290          290 RDPVGVKFDVNGNVVDVLDGNEGNTLNSVSEVQEYGEYLYTGSSVQPYVVVIK  342 (343)
Q Consensus       290 ~~~~v~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~~~~i~~~~  342 (343)
                       ...|++++.+|.....+....      +..+...++.||++.....+|.+++
T Consensus       245 -~~~i~~~~~DG~~r~~l~~~~------~~~i~i~~d~Iy~td~~~~~i~~~~  290 (302)
T 3s25_A          245 -NPALCVVKNDGTGFKELAKGE------FCNINVTSQYVYFTDFVSNKEYCTS  290 (302)
T ss_dssp             -SCEEEEEETTSCCCEEEEESC------EEEEEECSSEEEEEETTTCCEEEEE
T ss_pred             -CcEEEEEECCCCccEEeeCCc------cceEEEeCCEEEEEECCCCeEEEEE
Confidence             237888988886544443211      2245557999999999988898875

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.99  E-value=3.8e-07  Score=83.01  Aligned_cols=214  Identities=14%  Similarity=0.032  Sum_probs=123.9

Q ss_pred             ccccccccCCC------CCCCceEEEcCCCCeeEEEec--CCEEEEEEcCCCCeEEe-eecCCCccccccCCCCCcccCC
Q 019290           23 SKSYQQLQLPG------VVGPESLAFDCNGEGPYVGVS--DGRILKWKAANSGWTEF-ATTAPHRAREICDGSTNTTLEP   93 (343)
Q Consensus        23 ~~~~~~~~~~~------~~~p~~l~~d~~g~~l~~~~~--~g~i~~~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~   93 (343)
                      .+...++++++      ...|+.+++++||+.+|+...  .+.|..+| .+++...- .                    +
T Consensus       107 ~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i--------------------~  165 (373)
T 2mad_H          107 FLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLL--------------------S  165 (373)
T ss_pred             CcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEc--------------------C
Confidence            44456666651      246999999999999997753  57899999 87654321 1                    1


Q ss_pred             CcCCeeeEEEeCCCCeEEEEeCCCe-EEEEeCCCCeEEEcccc--cCCCCccCcceeEEeCCCCeEEEEeCCcccccccc
Q 019290           94 LCGRPLGIKFNPVTCDLYIADAYFG-LMVVGPNGGQAQQLASS--AGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQY  170 (343)
Q Consensus        94 ~~~~p~gi~~~~~~~~l~v~~~~~g-i~~~d~~~~~~~~~~~~--~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~  170 (343)
                         .+..+.+.+.+++.|++.+.+| +..+|. +++.......  .............+.+.++.+|+...         
T Consensus       166 ---~~~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~---------  232 (373)
T 2mad_H          166 ---SPTCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVY---------  232 (373)
T ss_pred             ---CCceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcC---------
Confidence               1112334443556777766555 888888 6665422110  00000011122333332356555442         


Q ss_pred             eeeeeecCCCceEEEEeCCCCceEEee----------cCCCCcce---eEEecCCCEEEEEEcC---------CCeEEEE
Q 019290          171 FMSIATGDRSGRLLKYDPLKKNVTVMY----------NGLSFPNG---VALSNNNSFLLLAESA---------TLKILRF  228 (343)
Q Consensus       171 ~~~~~~~~~~~~v~~~d~~~~~~~~~~----------~~~~~~~~---i~~~~d~~~lyv~~~~---------~~~i~~~  228 (343)
                               .+.++.+|..++....+.          .....|.+   +++++|++.+|++...         .+.|+++
T Consensus       233 ---------~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VI  303 (373)
T 2mad_H          233 ---------SGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSV  303 (373)
T ss_pred             ---------CceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEE
Confidence                     346787877544322111          01112444   7899999999997542         3689999


Q ss_pred             EccCccccccceeeecCCCCCCceeeCCCCC-EEEEeccCCCccccccccccccccCCCcccCCCeEEEECC-CCCEEEE
Q 019290          229 WLQGERTTYTPQLFAEMPRFPDNIKSDSKGE-FWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDV-NGNVVDV  306 (343)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~  306 (343)
                      |..+...   .+.+ ...+.|.++.+++||+ ++++++..                       .+.|..+|. .++.+..
T Consensus       304 D~~t~~v---v~~i-~~g~~p~~i~~s~Dg~~~l~v~~~~-----------------------~~~V~ViD~~t~~vv~~  356 (373)
T 2mad_H          304 TGLVGQT---SSQI-SLGHDVDAISVAQDGGPDLYALSAG-----------------------TEVLHIYDAGAGDQDQS  356 (373)
T ss_pred             ECCCCEE---EEEE-ECCCCcCeEEECCCCCeEEEEEcCC-----------------------CCeEEEEECCCCCEEee
Confidence            9865221   1222 3445699999999998 66665521                       347888997 4666655

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.99  E-value=4.4e-07  Score=82.22  Aligned_cols=255  Identities=11%  Similarity=0.053  Sum_probs=135.4

Q ss_pred             ccccccCCCCCCCceEEEcCCCCeeEEEec----------CCEEEEEEcCCCCeE-EeeecCCCccccccCCCCCcccCC
Q 019290           25 SYQQLQLPGVVGPESLAFDCNGEGPYVGVS----------DGRILKWKAANSGWT-EFATTAPHRAREICDGSTNTTLEP   93 (343)
Q Consensus        25 ~~~~~~~~~~~~p~~l~~d~~g~~l~~~~~----------~g~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~   93 (343)
                      ...+++..  ..| .+++++||+.+|++..          ++.|..||..+.+.. .+....              ....
T Consensus        43 ~~~~i~~g--~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~--------------~~~~  105 (361)
T 2oiz_A           43 FLGMVPTA--FNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPP--------------KRVQ  105 (361)
T ss_dssp             EEEEEECC--EEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECT--------------TBCC
T ss_pred             EEEEecCC--CCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCc--------------cccc
Confidence            34444444  368 9999999999997752          456999998775533 332110              0001


Q ss_pred             CcCCeeeEEEeCCCCeEEEEeCC--CeEEEEeCCCCeEEEc-ccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccc
Q 019290           94 LCGRPLGIKFNPVTCDLYIADAY--FGLMVVGPNGGQAQQL-ASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQY  170 (343)
Q Consensus        94 ~~~~p~gi~~~~~~~~l~v~~~~--~gi~~~d~~~~~~~~~-~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~  170 (343)
                      ....|.+++++++++.||+++..  +.|..+|.++++.... ....      ....+.+.+.+...+++...        
T Consensus       106 ~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~------~~~~v~~~p~~~~~~~~~~~--------  171 (361)
T 2oiz_A          106 GLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA------GCWSVIPQPNRPRSFMTICG--------  171 (361)
T ss_dssp             BCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT------TEEEEEECTTSSSEEEEEET--------
T ss_pred             cCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC------CcceeEEcCCCCeeEEEECC--------
Confidence            22358899999967789999743  4599999998876432 2211      11123333421233333221        


Q ss_pred             eeeeeecCCCceEEEEeCC-CCceE------EeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeee
Q 019290          171 FMSIATGDRSGRLLKYDPL-KKNVT------VMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFA  243 (343)
Q Consensus       171 ~~~~~~~~~~~~v~~~d~~-~~~~~------~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~  243 (343)
                               .+.+..++.+ +++..      ........+..+...+++..+++.. ..+.++.+++.++.. .....+.
T Consensus       172 ---------dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~v~v~d~~~~~~-~~~~~~~  240 (361)
T 2oiz_A          172 ---------DGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVS-YYGNVYSADFSGDEV-KVDGPWS  240 (361)
T ss_dssp             ---------TSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEB-TTSEEEEEECSSSSC-EEEEEEE
T ss_pred             ---------CCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEe-CCCeEEEEEecCCCc-eeccccc
Confidence                     2223333221 12221      1111122344444557777777665 467899999765321 1111110


Q ss_pred             -------cCCCCCCc---eeeCCCC-CEEEEeccCCCccccccccccccccCCCcccCCCeEEEECC-CCCEEEEeeCCC
Q 019290          244 -------EMPRFPDN---IKSDSKG-EFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDV-NGNVVDVLDGNE  311 (343)
Q Consensus       244 -------~~~~~p~~---i~~d~~G-~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~~~~  311 (343)
                             .....|.+   ++++++| ++|++....+....              ...+...|..+|. .++.+..+....
T Consensus       241 ~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~--------------~~~~~~~v~viD~~t~~~v~~i~~~~  306 (361)
T 2oiz_A          241 LLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGT--------------HKFPAAEIWVMDTKTKQRVARIPGRD  306 (361)
T ss_dssp             SCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTC--------------TTCCCSEEEEEETTTTEEEEEEECTT
T ss_pred             ccCccccccccccCCeeEEEEecCCCeEEEEEccCCCccc--------------ccCCCceEEEEECCCCcEEEEEecCC
Confidence                   01112333   8889885 78887651010000              0000237888997 466666665421


Q ss_pred             CCccCCceeEE--EeCCEEEEecCCCCeEEEEcC
Q 019290          312 GNTLNSVSEVQ--EYGEYLYTGSSVQPYVVVIKA  343 (343)
Q Consensus       312 ~~~~~~~~~~~--~~~g~l~i~~~~~~~i~~~~~  343 (343)
                            +..+.  +++..||+++.  +.|.++|+
T Consensus       307 ------p~~ia~spdg~~l~v~n~--~~v~v~D~  332 (361)
T 2oiz_A          307 ------ALSMTIDQQRNLMLTLDG--GNVNVYDI  332 (361)
T ss_dssp             ------CCEEEEETTTTEEEEECS--SCEEEEEC
T ss_pred             ------eeEEEECCCCCEEEEeCC--CeEEEEEC
Confidence                  33333  34667888875  88998874

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=98.97  E-value=9.9e-07  Score=78.90  Aligned_cols=234  Identities=12%  Similarity=0.049  Sum_probs=145.4

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCC--eEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEE
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSG--WTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIA  113 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~  113 (343)
                      ...++++.++|+.+.++..++.+..|+..+.+  ......                 ..........+.+.+ ++.+..+
T Consensus        99 ~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~-----------------~~~h~~~v~~~~~~~-~~~l~s~  160 (340)
T 1got_B           99 WVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRE-----------------LAGHTGYLSCCRFLD-DNQIVTS  160 (340)
T ss_dssp             CEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEE-----------------EECCSSCEEEEEEEE-TTEEEEE
T ss_pred             cEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEE-----------------ecCCCccEEEEEECC-CCcEEEE
Confidence            35688999999988888899999999986642  111100                 011122355677776 6777777


Q ss_pred             eCCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCce
Q 019290          114 DAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNV  193 (343)
Q Consensus       114 ~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~  193 (343)
                      .....|..+|.++++........    ...+..+++.+ +++++++...                 .+.|..||..++..
T Consensus       161 s~d~~i~~wd~~~~~~~~~~~~h----~~~v~~~~~~~-~~~~l~sg~~-----------------d~~v~~wd~~~~~~  218 (340)
T 1got_B          161 SGDTTCALWDIETGQQTTTFTGH----TGDVMSLSLAP-DTRLFVSGAC-----------------DASAKLWDVREGMC  218 (340)
T ss_dssp             ETTSCEEEEETTTTEEEEEECCC----SSCEEEEEECT-TSSEEEEEET-----------------TSCEEEEETTTCSE
T ss_pred             ECCCcEEEEECCCCcEEEEEcCC----CCceEEEEECC-CCCEEEEEeC-----------------CCcEEEEECCCCee
Confidence            54445999999888654332221    13478899999 5887775433                 45688888876664


Q ss_pred             EE-eecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCC--CCCCceeeCCCCCEEEEeccCCCc
Q 019290          194 TV-MYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMP--RFPDNIKSDSKGEFWIAMNSARGK  270 (343)
Q Consensus       194 ~~-~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--~~p~~i~~d~~G~lwi~~~~~~~~  270 (343)
                      .. +.........++++|++..+. +...++.|..|++.....   ...+....  .....++++++|++.++...    
T Consensus       219 ~~~~~~h~~~v~~v~~~p~~~~l~-s~s~d~~v~iwd~~~~~~---~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~----  290 (340)
T 1got_B          219 RQTFTGHESDINAICFFPNGNAFA-TGSDDATCRLFDLRADQE---LMTYSHDNIICGITSVSFSKSGRLLLAGYD----  290 (340)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEE-EEETTSCEEEEETTTTEE---EEEECCTTCCSCEEEEEECTTSSEEEEEET----
T ss_pred             EEEEcCCcCCEEEEEEcCCCCEEE-EEcCCCcEEEEECCCCcE---EEEEccCCcccceEEEEECCCCCEEEEECC----
Confidence            43 333445578899999998655 445688999999865221   11221111  11234678999988887665    


Q ss_pred             cccccccccccccCCCcccCCCeEEEECC-CCCEEEEeeCCCCCccCCceeEEEe-CCEEEEecCCCCeEEEE
Q 019290          271 IESNKKTAFCEETAKPWFLRDPVGVKFDV-NGNVVDVLDGNEGNTLNSVSEVQEY-GEYLYTGSSVQPYVVVI  341 (343)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~~~~i~~~  341 (343)
                                          .+.|..+|. +++....+....    ..+..+... +|++.++......|.++
T Consensus       291 --------------------d~~i~vwd~~~~~~~~~~~~h~----~~v~~~~~s~dg~~l~s~s~D~~i~iW  339 (340)
T 1got_B          291 --------------------DFNCNVWDALKADRAGVLAGHD----NRVSCLGVTDDGMAVATGSWDSFLKIW  339 (340)
T ss_dssp             --------------------TSEEEEEETTTCCEEEEEECCS----SCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred             --------------------CCeEEEEEcccCcEeeEeecCC----CcEEEEEEcCCCCEEEEEcCCccEEec
Confidence                                346777875 566666654322    245555444 55555555444555544

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=98.97  E-value=1.5e-06  Score=77.68  Aligned_cols=187  Identities=6%  Similarity=0.012  Sum_probs=115.7

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      ...++++.++|+.+.++..++.|..||..++.......                   .....+..+++++++..|..+..
T Consensus        57 ~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~-------------------~~~~~v~~~~~s~~~~~l~s~~~  117 (340)
T 1got_B           57 KIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIP-------------------LRSSWVMTCAYAPSGNYVACGGL  117 (340)
T ss_dssp             CEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-------------------CSSSCEEEEEECTTSSEEEEEET
T ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEee-------------------cCCccEEEEEECCCCCEEEEEeC
Confidence            46789999999988889999999999987755332211                   12234578889984444555543


Q ss_pred             CCeEEEEeCCCCe--EEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCce
Q 019290          116 YFGLMVVGPNGGQ--AQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNV  193 (343)
Q Consensus       116 ~~gi~~~d~~~~~--~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~  193 (343)
                      ...+..++..++.  .+... ...+ ....+..+.+.+ ++.+..+..                  .+.|..||..+++.
T Consensus       118 d~~v~iw~~~~~~~~~~~~~-~~~~-h~~~v~~~~~~~-~~~l~s~s~------------------d~~i~~wd~~~~~~  176 (340)
T 1got_B          118 DNICSIYNLKTREGNVRVSR-ELAG-HTGYLSCCRFLD-DNQIVTSSG------------------DTTCALWDIETGQQ  176 (340)
T ss_dssp             TCEEEEEETTTCSBSCEEEE-EEEC-CSSCEEEEEEEE-TTEEEEEET------------------TSCEEEEETTTTEE
T ss_pred             CCeEEEEECccCCCcceeEE-EecC-CCccEEEEEECC-CCcEEEEEC------------------CCcEEEEECCCCcE
Confidence            3448888886542  11111 1111 113456677777 477555332                  45688889877765


Q ss_pred             EEee-cCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEecc
Q 019290          194 TVMY-NGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNS  266 (343)
Q Consensus       194 ~~~~-~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~~  266 (343)
                      .... ........++++++++. +++...++.|..|++.....   ...+.........+++.++|+++++...
T Consensus       177 ~~~~~~h~~~v~~~~~~~~~~~-l~sg~~d~~v~~wd~~~~~~---~~~~~~h~~~v~~v~~~p~~~~l~s~s~  246 (340)
T 1got_B          177 TTTFTGHTGDVMSLSLAPDTRL-FVSGACDASAKLWDVREGMC---RQTFTGHESDINAICFFPNGNAFATGSD  246 (340)
T ss_dssp             EEEECCCSSCEEEEEECTTSSE-EEEEETTSCEEEEETTTCSE---EEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             EEEEcCCCCceEEEEECCCCCE-EEEEeCCCcEEEEECCCCee---EEEEcCCcCCEEEEEEcCCCCEEEEEcC
Confidence            4333 33345688999998875 45556788999999864211   1222222222456788999988777655

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=98.96  E-value=1.8e-06  Score=77.09  Aligned_cols=191  Identities=10%  Similarity=0.115  Sum_probs=116.3

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      ...++++.++|+.++++..++.|..||..+++.....                   ......+..+++++++..|+.+..
T Consensus        34 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-------------------~~h~~~v~~~~~~~~~~~l~s~~~   94 (369)
T 3zwl_B           34 PLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTL-------------------DGHTGTIWSIDVDCFTKYCVTGSA   94 (369)
T ss_dssp             CEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEE-------------------CCCSSCEEEEEECTTSSEEEEEET
T ss_pred             eEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhh-------------------hhcCCcEEEEEEcCCCCEEEEEeC
Confidence            4678999999998888888999999998776543221                   122234678999984445665644


Q ss_pred             CCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCc---
Q 019290          116 YFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKN---  192 (343)
Q Consensus       116 ~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~---  192 (343)
                      ...|..+|.++++.......     ...+..+++.+ ++..+++.....            ....+.|..+|...+.   
T Consensus        95 dg~i~iwd~~~~~~~~~~~~-----~~~v~~~~~~~-~~~~l~~~~~~~------------~~~~g~i~~~d~~~~~~~~  156 (369)
T 3zwl_B           95 DYSIKLWDVSNGQCVATWKS-----PVPVKRVEFSP-CGNYFLAILDNV------------MKNPGSINIYEIERDSATH  156 (369)
T ss_dssp             TTEEEEEETTTCCEEEEEEC-----SSCEEEEEECT-TSSEEEEEECCB------------TTBCCEEEEEEEEECTTTC
T ss_pred             CCeEEEEECCCCcEEEEeec-----CCCeEEEEEcc-CCCEEEEecCCc------------cCCCCEEEEEEecCCccce
Confidence            44599999988775544331     13477899999 476655432210            0012456556543221   


Q ss_pred             ---------eEEeecC--CCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEE
Q 019290          193 ---------VTVMYNG--LSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFW  261 (343)
Q Consensus       193 ---------~~~~~~~--~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lw  261 (343)
                               ...+...  ......++++++++.++++ ..++.|..|++.....  ....+.........++++++|++.
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l  233 (369)
T 3zwl_B          157 ELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAG-HKDGKISKYDVSNNYE--YVDSIDLHEKSISDMQFSPDLTYF  233 (369)
T ss_dssp             CEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEE-ETTSEEEEEETTTTTE--EEEEEECCSSCEEEEEECTTSSEE
T ss_pred             eecccccceeeeccCCcCccceeEEEEcCCCCEEEEE-cCCCEEEEEECCCCcE--eEEEEecCCCceeEEEECCCCCEE
Confidence                     1111111  1256788899999877665 4578999999865211  112222122234567888999766


Q ss_pred             EEecc
Q 019290          262 IAMNS  266 (343)
Q Consensus       262 i~~~~  266 (343)
                      ++...
T Consensus       234 ~~~~~  238 (369)
T 3zwl_B          234 ITSSR  238 (369)
T ss_dssp             EEEET
T ss_pred             EEecC
Confidence            66544

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=98.96  E-value=7.3e-08  Score=87.12  Aligned_cols=194  Identities=13%  Similarity=0.079  Sum_probs=109.0

Q ss_pred             CceEEEcCCCCeeEEEec------CCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeE
Q 019290           37 PESLAFDCNGEGPYVGVS------DGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDL  110 (343)
Q Consensus        37 p~~l~~d~~g~~l~~~~~------~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l  110 (343)
                      ..++++.|||+.+.++..      ++.+..|+..++....          ..+     .........+..+++.+ ++.+
T Consensus        45 V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~----------~~~-----~~~~~~~~~V~~~~~s~-d~~~  108 (357)
T 4g56_B           45 IGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNE----------SLC-----TAGVQTEAGVTDVAWVS-EKGI  108 (357)
T ss_dssp             EEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CG----------GGC-----SEEEECSSCEEEEEEET-TTEE
T ss_pred             EEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcce----------eEe-----cccCCCCCCEEEEEEcC-CCCE
Confidence            468999999997776654      6778888765432110          000     00001122367899998 7888


Q ss_pred             EEEeCCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCC
Q 019290          111 YIADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLK  190 (343)
Q Consensus       111 ~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~  190 (343)
                      +++.....|..+|..+++...............+..+++.+ +|+..++...                 .+.|..+|..+
T Consensus       109 l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l~sgs~-----------------dg~v~iwd~~~  170 (357)
T 4g56_B          109 LVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS-DGTQAVSGGK-----------------DFSVKVWDLSQ  170 (357)
T ss_dssp             EEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECS-SSSEEEEEET-----------------TSCEEEEETTT
T ss_pred             EEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECC-CCCEEEEEeC-----------------CCeEEEEECCC
Confidence            88754444888888776543222111111124578899999 5877665433                 45688889887


Q ss_pred             CceEEee-cCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCC-CEEEEec
Q 019290          191 KNVTVMY-NGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKG-EFWIAMN  265 (343)
Q Consensus       191 ~~~~~~~-~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G-~lwi~~~  265 (343)
                      ++..... ........+++++++..++++...++.|..|++..... .....+......+..+++.+++ +++++..
T Consensus       171 ~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~-~~~~~~~~~~~~v~~v~~sp~~~~~la~g~  246 (357)
T 4g56_B          171 KAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKP-ATRIDFCASDTIPTSVTWHPEKDDTFACGD  246 (357)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSC-BCBCCCTTCCSCEEEEEECTTSTTEEEEEE
T ss_pred             CcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCce-eeeeeeccccccccchhhhhcccceEEEee
Confidence            7654333 33455778999988876677777788999999765322 1110111112223446677764 5555443

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=98.96  E-value=9.3e-07  Score=79.47  Aligned_cols=237  Identities=10%  Similarity=-0.020  Sum_probs=137.9

Q ss_pred             CceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCC
Q 019290           37 PESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAY  116 (343)
Q Consensus        37 p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~  116 (343)
                      ..++++.+++. +.++..+|.|..||..+++........               .......+..+++++++..|..+...
T Consensus        85 v~~~~~s~d~~-l~~~s~dg~v~lWd~~~~~~~~~~~~~---------------~~~H~~~V~~v~~spdg~~l~sgs~d  148 (344)
T 4gqb_B           85 VADLTWVGERG-ILVASDSGAVELWELDENETLIVSKFC---------------KYEHDDIVSTVSVLSSGTQAVSGSKD  148 (344)
T ss_dssp             EEEEEEETTTE-EEEEETTSEEEEEEECTTSSCEEEEEE---------------EECCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEEEEEeCCCe-EEEEECCCEEEEEeccCCCceeEeecc---------------ccCCCCCEEEEEECCCCCEEEEEeCC
Confidence            56889999976 778889999999998776532211100               00112346789999844445555433


Q ss_pred             CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEe
Q 019290          117 FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVM  196 (343)
Q Consensus       117 ~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~  196 (343)
                      ..|..+|.++++........    ...+..+++.+.+..++++...                 .+.|..+|..+++....
T Consensus       149 ~~i~iwd~~~~~~~~~~~~h----~~~V~~~~~~~~~~~~l~s~s~-----------------D~~v~iwd~~~~~~~~~  207 (344)
T 4gqb_B          149 ICIKVWDLAQQVVLSSYRAH----AAQVTCVAASPHKDSVFLSCSE-----------------DNRILLWDTRCPKPASQ  207 (344)
T ss_dssp             SCEEEEETTTTEEEEEECCC----SSCEEEEEECSSCTTEEEEEET-----------------TSCEEEEETTSSSCEEE
T ss_pred             CeEEEEECCCCcEEEEEcCc----CCceEEEEecCCCCCceeeecc-----------------ccccccccccccceeee
Confidence            34999999988765432221    1357788888842356665432                 45688889876664332


Q ss_pred             e-c--CCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCC-EEEEeccCCCccc
Q 019290          197 Y-N--GLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGE-FWIAMNSARGKIE  272 (343)
Q Consensus       197 ~-~--~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-lwi~~~~~~~~~~  272 (343)
                      . .  .......+++++++..++++...++.|..||+.....   ...+.........+++.++|. +.++...      
T Consensus       208 ~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~---~~~~~~h~~~v~~v~fsp~g~~~lasgs~------  278 (344)
T 4gqb_B          208 IGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSC---VLSSAVHSQCVTGLVFSPHSVPFLASLSE------  278 (344)
T ss_dssp             CC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--C---CEEEECCSSCEEEEEECSSSSCCEEEEET------
T ss_pred             eecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcE---EEEEcCCCCCEEEEEEccCCCeEEEEEeC------
Confidence            2 1  2234578889887766777777789999999865221   222222222234577888884 4544433      


Q ss_pred             cccccccccccCCCcccCCCeEEEECCCCCEEEEeeCCCCCccCCceeEEEe--CCEEEEecCCCCeEEEE
Q 019290          273 SNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEGNTLNSVSEVQEY--GEYLYTGSSVQPYVVVI  341 (343)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~--~g~l~i~~~~~~~i~~~  341 (343)
                                        .+.|..+|.+...+..+..    ....+..+...  +.+|..+...-..|.+.
T Consensus       279 ------------------D~~i~vwd~~~~~~~~~~~----H~~~V~~v~~sp~~~~llas~s~D~~v~~w  327 (344)
T 4gqb_B          279 ------------------DCSLAVLDSSLSELFRSQA----HRDFVRDATWSPLNHSLLTTVGWDHQVVHH  327 (344)
T ss_dssp             ------------------TSCEEEECTTCCEEEEECC----CSSCEEEEEECSSSTTEEEEEETTSCEEEE
T ss_pred             ------------------CCeEEEEECCCCcEEEEcC----CCCCEEEEEEeCCCCeEEEEEcCCCeEEEE
Confidence                              2467777875444333321    12345555433  34465554444455543

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=98.95  E-value=4.2e-07  Score=82.96  Aligned_cols=242  Identities=11%  Similarity=0.053  Sum_probs=142.9

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCC--CeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEE
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANS--GWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIA  113 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~  113 (343)
                      ...++++.++|..+.++..++.|..|+..+.  ......                 ........+..++++++++.++++
T Consensus        69 ~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~-----------------~~~~h~~~v~~~~~~~~~~~~l~s  131 (416)
T 2pm9_A           69 KFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMA-----------------RFSNHSSSVKTVKFNAKQDNVLAS  131 (416)
T ss_dssp             CEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEE-----------------ECCCSSSCCCEEEECSSSTTBEEE
T ss_pred             ceEEEEECCCCCeEEEEccCCeEEEeecccccccccchh-----------------hccCCccceEEEEEcCCCCCEEEE
Confidence            4679999999998888888999999998761  111111                 001222346789999842444444


Q ss_pred             eCCCe-EEEEeCCCCe------EEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEE
Q 019290          114 DAYFG-LMVVGPNGGQ------AQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKY  186 (343)
Q Consensus       114 ~~~~g-i~~~d~~~~~------~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~  186 (343)
                      ...+| |..+|.++++      ........ ......+..+++.+.++.++++...                 .+.|..+
T Consensus       132 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~-----------------dg~v~iw  193 (416)
T 2pm9_A          132 GGNNGEIFIWDMNKCTESPSNYTPLTPGQS-MSSVDEVISLAWNQSLAHVFASAGS-----------------SNFASIW  193 (416)
T ss_dssp             ECSSSCEEBCBTTTTSSCTTTCCCBCCCCS-CCSSCCCCEEEECSSCTTEEEEESS-----------------SSCEEEE
T ss_pred             EcCCCeEEEEECCCCccccccccccccccc-cCCCCCeeEEEeCCCCCcEEEEEcC-----------------CCCEEEE
Confidence            34444 8899998765      11111111 1122457889999832566665433                 4678889


Q ss_pred             eCCCCceEEeecC-------CCCcceeEEecCCCEEEEEEcCCC---eEEEEEccCccccccceeee-cCCCCCCceeeC
Q 019290          187 DPLKKNVTVMYNG-------LSFPNGVALSNNNSFLLLAESATL---KILRFWLQGERTTYTPQLFA-EMPRFPDNIKSD  255 (343)
Q Consensus       187 d~~~~~~~~~~~~-------~~~~~~i~~~~d~~~lyv~~~~~~---~i~~~~~~~~~~~~~~~~~~-~~~~~p~~i~~d  255 (343)
                      |..+++.......       ......+++++++..++++...++   .|..|++.....  ....+. ........++++
T Consensus       194 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~--~~~~~~~~~~~~v~~~~~s  271 (416)
T 2pm9_A          194 DLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANT--PLQTLNQGHQKGILSLDWC  271 (416)
T ss_dssp             ETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTS--CSBCCCSCCSSCEEEEEEC
T ss_pred             ECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCC--CcEEeecCccCceeEEEeC
Confidence            9877665433322       345788999999865566656666   899999875211  111221 112223456778


Q ss_pred             C-CCCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECC-CCCEEEEeeCCCCCccCCceeEEEe-CC-EEEEe
Q 019290          256 S-KGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDV-NGNVVDVLDGNEGNTLNSVSEVQEY-GE-YLYTG  331 (343)
Q Consensus       256 ~-~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~~-~g-~l~i~  331 (343)
                      + +|+++++...                        .+.|..+|. .++.+..+....+    .+..+... ++ +++++
T Consensus       272 ~~~~~~l~s~~~------------------------dg~v~~wd~~~~~~~~~~~~~~~----~v~~~~~s~~~~~~l~s  323 (416)
T 2pm9_A          272 HQDEHLLLSSGR------------------------DNTVLLWNPESAEQLSQFPARGN----WCFKTKFAPEAPDLFAC  323 (416)
T ss_dssp             SSCSSCEEEEES------------------------SSEEEEECSSSCCEEEEEECSSS----CCCCEEECTTCTTEEEE
T ss_pred             CCCCCeEEEEeC------------------------CCCEEEeeCCCCccceeecCCCC----ceEEEEECCCCCCEEEE
Confidence            7 7776666554                        346777886 4666666653322    34444433 34 56666


Q ss_pred             cCCCCeEEEEc
Q 019290          332 SSVQPYVVVIK  342 (343)
Q Consensus       332 ~~~~~~i~~~~  342 (343)
                      ......|.+++
T Consensus       324 ~~~d~~i~iw~  334 (416)
T 2pm9_A          324 ASFDNKIEVQT  334 (416)
T ss_dssp             CCSSSEEEEEE
T ss_pred             EecCCcEEEEE
Confidence            66666666654

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=98.95  E-value=6.8e-07  Score=79.85  Aligned_cols=250  Identities=10%  Similarity=0.025  Sum_probs=138.8

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      ...++++.++++.++++..++.|..||..+++......                    ....+..+.+++++..++++..
T Consensus        76 ~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--------------------~~~~v~~~~~~~~~~~l~~~~~  135 (369)
T 3zwl_B           76 TIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK--------------------SPVPVKRVEFSPCGNYFLAILD  135 (369)
T ss_dssp             CEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE--------------------CSSCEEEEEECTTSSEEEEEEC
T ss_pred             cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee--------------------cCCCeEEEEEccCCCEEEEecC
Confidence            46789999999988888899999999988765443221                    1224678999984555555543


Q ss_pred             C-----CeEEEEeCCCCeE----EEccc-----ccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCc
Q 019290          116 Y-----FGLMVVGPNGGQA----QQLAS-----SAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSG  181 (343)
Q Consensus       116 ~-----~gi~~~d~~~~~~----~~~~~-----~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~  181 (343)
                      .     ..+..+|.+++..    .....     .........+..+++++ ++..+++...                 .+
T Consensus       136 ~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~-----------------dg  197 (369)
T 3zwl_B          136 NVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWST-KGKYIIAGHK-----------------DG  197 (369)
T ss_dssp             CBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECG-GGCEEEEEET-----------------TS
T ss_pred             CccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcC-CCCEEEEEcC-----------------CC
Confidence            3     3477777654321    11000     00000112567788888 4665553322                 46


Q ss_pred             eEEEEeCCC-CceE-EeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCC
Q 019290          182 RLLKYDPLK-KNVT-VMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGE  259 (343)
Q Consensus       182 ~v~~~d~~~-~~~~-~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~  259 (343)
                      .|..||..+ ++.. .+.........+++++++..++.+ ..++.|..|++.....   ...+. .......++++++|+
T Consensus       198 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~v~d~~~~~~---~~~~~-~~~~~~~~~~~~~~~  272 (369)
T 3zwl_B          198 KISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITS-SRDTNSFLVDVSTLQV---LKKYE-TDCPLNTAVITPLKE  272 (369)
T ss_dssp             EEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEE-ETTSEEEEEETTTCCE---EEEEE-CSSCEEEEEECSSSS
T ss_pred             EEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEe-cCCceEEEEECCCCce---eeeec-CCCCceeEEecCCCc
Confidence            788999876 3433 333344557889999999876655 4678999999875221   11221 222244577888887


Q ss_pred             EEEEeccCCCccccccccccccccCCCcccCCCeEEEECC-CCCEEEEeeCCCCCccCCceeEEEe-CCEEEEecCCCCe
Q 019290          260 FWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDV-NGNVVDVLDGNEGNTLNSVSEVQEY-GEYLYTGSSVQPY  337 (343)
Q Consensus       260 lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~~~~  337 (343)
                      ..++....+...+      +....    ......+..+|. .++.+..+....    ..+..+... +++++++......
T Consensus       273 ~l~~~~~~~~~~~------~~~~~----~~~~~~i~~~d~~~~~~~~~~~~~~----~~v~~~~~s~~~~~l~s~~~dg~  338 (369)
T 3zwl_B          273 FIILGGGQEAKDV------TTTSA----NEGKFEARFYHKIFEEEIGRVQGHF----GPLNTVAISPQGTSYASGGEDGF  338 (369)
T ss_dssp             EEEEEECCC-----------------------CEEEEEETTTCCEEEEEECCS----SCEEEEEECTTSSEEEEEETTSE
T ss_pred             eEEEeecCCCceE------EEEec----CCCcceeEEEecCCCcchhheeccc----CcEEEEEECCCCCEEEEEcCCCe
Confidence            6655443121100      00000    000113455554 455555554322    234444443 5555555555566


Q ss_pred             EEEEc
Q 019290          338 VVVIK  342 (343)
Q Consensus       338 i~~~~  342 (343)
                      |.+++
T Consensus       339 v~iw~  343 (369)
T 3zwl_B          339 IRLHH  343 (369)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            66554

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.95  E-value=3.3e-07  Score=83.23  Aligned_cols=218  Identities=13%  Similarity=0.083  Sum_probs=122.5

Q ss_pred             ccccccccCCC------CCCCceEEEcCCCCeeEEEec--CCEEEEEEcCCCCeE-EeeecCCCccccccCCCCCcccCC
Q 019290           23 SKSYQQLQLPG------VVGPESLAFDCNGEGPYVGVS--DGRILKWKAANSGWT-EFATTAPHRAREICDGSTNTTLEP   93 (343)
Q Consensus        23 ~~~~~~~~~~~------~~~p~~l~~d~~g~~l~~~~~--~g~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~   93 (343)
                      .+...++++|.      ...|+.+++++||+.+|++..  .+.|..+|..+.+.. .+..                   +
T Consensus       119 ~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v-------------------~  179 (386)
T 3sjl_D          119 LLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDV-------------------P  179 (386)
T ss_dssp             CCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC-------------------C
T ss_pred             CeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEEC-------------------C
Confidence            45567777763      347999999999999998753  578999999886543 2210                   0


Q ss_pred             CcCCeeeEEEeCCCCeEEEEeCCCe-EEEEeCCC-CeEEEccc-ccCCCCccCcceeEEeCCCCeEEEEeCCcccccccc
Q 019290           94 LCGRPLGIKFNPVTCDLYIADAYFG-LMVVGPNG-GQAQQLAS-SAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQY  170 (343)
Q Consensus        94 ~~~~p~gi~~~~~~~~l~v~~~~~g-i~~~d~~~-~~~~~~~~-~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~  170 (343)
                      .+   .++ +.. +.+.|++.+.+| +..++.++ +++..... ..........+..+++..+|++++...         
T Consensus       180 g~---~~~-~P~-g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~---------  245 (386)
T 3sjl_D          180 DC---YHI-FPT-APDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTY---------  245 (386)
T ss_dssp             SE---EEE-EEE-ETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBT---------
T ss_pred             Cc---cee-ecC-CCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeC---------
Confidence            00   111 111 222222222223 44555443 33311000 000000112233455533687655332         


Q ss_pred             eeeeeecCCCceEEEEeCCCCceEEeec----------CCC---CcceeEEecCCCEEEEEEc---------CCCeEEEE
Q 019290          171 FMSIATGDRSGRLLKYDPLKKNVTVMYN----------GLS---FPNGVALSNNNSFLLLAES---------ATLKILRF  228 (343)
Q Consensus       171 ~~~~~~~~~~~~v~~~d~~~~~~~~~~~----------~~~---~~~~i~~~~d~~~lyv~~~---------~~~~i~~~  228 (343)
                               .+.|+.+|..++..+....          ...   ....++++++++.+|++..         ..+.|+++
T Consensus       246 ---------~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~vi  316 (386)
T 3sjl_D          246 ---------TGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVL  316 (386)
T ss_dssp             ---------TSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEE
T ss_pred             ---------CCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEE
Confidence                     3579999986554332110          111   2234788999999999853         23689999


Q ss_pred             EccCccccccceeeecCCCCCCceeeCCCCC--EEEEeccCCCccccccccccccccCCCcccCCCeEEEECC-CCCEEE
Q 019290          229 WLQGERTTYTPQLFAEMPRFPDNIKSDSKGE--FWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDV-NGNVVD  305 (343)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~--lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~  305 (343)
                      |+.+...   .+.+ .....|.++.+++||+  ||+++..                        .+.|..+|. .++.+.
T Consensus       317 D~~t~kv---~~~i-~vg~~~~~lavs~D~~~~ly~tn~~------------------------~~~VsViD~~t~k~~~  368 (386)
T 3sjl_D          317 DAKTGER---LAKF-EMGHEIDSINVSQDEKPLLYALSTG------------------------DKTLYIHDAESGEELR  368 (386)
T ss_dssp             ETTTCCE---EEEE-EEEEEECEEEECSSSSCEEEEEETT------------------------TTEEEEEETTTCCEEE
T ss_pred             ECCCCeE---EEEE-ECCCCcceEEECCCCCeEEEEEcCC------------------------CCeEEEEECCCCcEEE
Confidence            9876322   1111 2233478999999985  4555544                        347888997 688888


Q ss_pred             EeeCC
Q 019290          306 VLDGN  310 (343)
Q Consensus       306 ~~~~~  310 (343)
                      .+..+
T Consensus       369 ~i~~~  373 (386)
T 3sjl_D          369 SVNQL  373 (386)
T ss_dssp             EECCC
T ss_pred             EecCC
Confidence            88654

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=98.94  E-value=1.9e-07  Score=86.51  Aligned_cols=193  Identities=18%  Similarity=0.158  Sum_probs=120.5

Q ss_pred             CceEEEcC-CCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           37 PESLAFDC-NGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        37 p~~l~~d~-~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      ..+|++.| +++++.++..+|.|..||..+++...+...                 ......+.++++++.++.++++..
T Consensus       122 V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~-----------------~gH~~~V~~l~f~p~~~~~l~s~s  184 (435)
T 4e54_B          122 ATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKG-----------------IGAGGSITGLKFNPLNTNQFYASS  184 (435)
T ss_dssp             EEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECC-----------------CSSSCCCCEEEECSSCTTEEEEEC
T ss_pred             EEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEc-----------------cCCCCCEEEEEEeCCCCCEEEEEe
Confidence            56899998 466677888999999999876543332210                 112234678999874555444435


Q ss_pred             CCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceE
Q 019290          116 YFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVT  194 (343)
Q Consensus       116 ~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~  194 (343)
                      .+| |..+|.+++..+.+.....  ....+..+++++ ++.+.++...                 .+.|..+|..+..+.
T Consensus       185 ~D~~v~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~l~~g~~-----------------dg~i~~wd~~~~~~~  244 (435)
T 4e54_B          185 MEGTTRLQDFKGNILRVFASSDT--INIWFCSLDVSA-SSRMVVTGDN-----------------VGNVILLNMDGKELW  244 (435)
T ss_dssp             SSSCEEEEETTSCEEEEEECCSS--CSCCCCCEEEET-TTTEEEEECS-----------------SSBEEEEESSSCBCC
T ss_pred             CCCEEEEeeccCCceeEEeccCC--CCccEEEEEECC-CCCEEEEEeC-----------------CCcEeeeccCcceeE
Confidence            555 8899998776655432211  123467788999 5776665433                 567888888765554


Q ss_pred             EeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEecc
Q 019290          195 VMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNS  266 (343)
Q Consensus       195 ~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~~  266 (343)
                      .+.........++++|++..++++...++.|..|++.....................++++++|+..++...
T Consensus       245 ~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~  316 (435)
T 4e54_B          245 NLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQ  316 (435)
T ss_dssp             CSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEES
T ss_pred             EEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcC
Confidence            444444557889999998877777777889999998642210111110011111234567888876666544

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=98.93  E-value=5.6e-08  Score=87.38  Aligned_cols=187  Identities=13%  Similarity=0.107  Sum_probs=116.4

Q ss_pred             CeeeEEEeCCCCeEEEEeC------------CCe-EEEEeCC--CCeEEEccccc--CCCCccCcceeEEeC-CCC--eE
Q 019290           97 RPLGIKFNPVTCDLYIADA------------YFG-LMVVGPN--GGQAQQLASSA--GGIPFRFTNDLDIDP-NTG--IV  156 (343)
Q Consensus        97 ~p~gi~~~~~~~~l~v~~~------------~~g-i~~~d~~--~~~~~~~~~~~--~~~~~~~~~~i~~d~-~dg--~l  156 (343)
                      .|.+|.+++ +|.+|++..            ..| |+++|++  +++.+.+....  .....-.|++|.+.. .+|  +|
T Consensus        51 G~EDi~~~~-~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L  129 (355)
T 3sre_A           51 GSEDLEILP-NGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYL  129 (355)
T ss_dssp             CCCEEEECT-TSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred             CcceeEEcC-CCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence            467888887 889999851            344 9999987  34555553322  111224688888743 124  68


Q ss_pred             EEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEee----cCCCCcceeEEecCCCEEEEEEc------------
Q 019290          157 YFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMY----NGLSFPNGVALSNNNSFLLLAES------------  220 (343)
Q Consensus       157 ~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~----~~~~~~~~i~~~~d~~~lyv~~~------------  220 (343)
                      |+.+...             +.....|++++++++....+.    ..+..+|+++++++|+ +|++++            
T Consensus       130 ~Vvnh~~-------------~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~-fyvt~~~~ftd~~~~~~e  195 (355)
T 3sre_A          130 LVVNHPG-------------SSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWE  195 (355)
T ss_dssp             EEEECST-------------TCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE-EEEEESCSCSSHHHHHHH
T ss_pred             EEEECCC-------------CCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCC-EEecCCcEeCCcccccch
Confidence            8887651             112345889998765543321    2356799999999875 788765            


Q ss_pred             -----CCCeEEEEEccCccccccceeeecCCCCCCceeeCCCC-CEEEEeccCCCccccccccccccccCCCcccCCCeE
Q 019290          221 -----ATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKG-EFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVG  294 (343)
Q Consensus       221 -----~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G-~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  294 (343)
                           ..++|++++..      +.+.+...-..|+|+++++|| .+|+++..                        ...|
T Consensus       196 ~~~~~~~g~vyr~d~~------~~~~~~~~l~~pNGia~spDg~~lYvadt~------------------------~~~I  245 (355)
T 3sre_A          196 MHLGLAWSFVTYYSPN------DVRVVAEGFDFANGINISPDGKYVYIAELL------------------------AHKI  245 (355)
T ss_dssp             HHTTCCCEEEEEECTT------CCEEEEEEESSEEEEEECTTSSEEEEEEGG------------------------GTEE
T ss_pred             hhccCCccEEEEEECC------eEEEeecCCcccCcceECCCCCEEEEEeCC------------------------CCeE
Confidence                 24689888752      223333322359999999998 68999876                        2356


Q ss_pred             EEEC--CCCCEE--EEeeCCCCCccCCceeEEEe-C-CEEEEecC
Q 019290          295 VKFD--VNGNVV--DVLDGNEGNTLNSVSEVQEY-G-EYLYTGSS  333 (343)
Q Consensus       295 ~~~d--~~g~~~--~~~~~~~~~~~~~~~~~~~~-~-g~l~i~~~  333 (343)
                      ++|+  ++|+..  ..+..+     ..+-.+..+ + |+||++..
T Consensus       246 ~~~~~~~~g~l~~~~~~~~~-----g~PDGi~vD~e~G~lwva~~  285 (355)
T 3sre_A          246 HVYEKHANWTLTPLRVLSFD-----TLVDNISVDPVTGDLWVGCH  285 (355)
T ss_dssp             EEEEECTTSCEEEEEEEECS-----SEEEEEEECTTTCCEEEEEE
T ss_pred             EEEEECCCCcEecCEEEeCC-----CCCceEEEeCCCCcEEEEec
Confidence            6665  456542  233321     234455545 3 89999664

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=98.93  E-value=1.7e-06  Score=78.86  Aligned_cols=235  Identities=12%  Similarity=0.046  Sum_probs=142.3

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      ...++++.++|+.++++..++.|..||..+.....+.                    .....+..+++++++..|+.+..
T Consensus       110 ~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~--------------------~~~~~v~~~~~~~~~~~l~~~~~  169 (425)
T 1r5m_A          110 QVTCLAWSHDGNSIVTGVENGELRLWNKTGALLNVLN--------------------FHRAPIVSVKWNKDGTHIISMDV  169 (425)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEEC--------------------CCCSCEEEEEECTTSSEEEEEET
T ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeecc--------------------CCCccEEEEEECCCCCEEEEEec
Confidence            4678999999998888889999999995444333331                    22234678999984555666654


Q ss_pred             CCeEEEEeCCCCeEEEcccccCCC-----------CccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEE
Q 019290          116 YFGLMVVGPNGGQAQQLASSAGGI-----------PFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLL  184 (343)
Q Consensus       116 ~~gi~~~d~~~~~~~~~~~~~~~~-----------~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~  184 (343)
                      ...+..+|.++++...........           ....+..+++.+ ++.++++..                  .+.|.
T Consensus       170 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~------------------~g~i~  230 (425)
T 1r5m_A          170 ENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVD-DDKFVIPGP------------------KGAIF  230 (425)
T ss_dssp             TCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEE-TTEEEEECG------------------GGCEE
T ss_pred             CCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcC-CCEEEEEcC------------------CCeEE
Confidence            445999999887654432221110           001167788888 477666432                  46788


Q ss_pred             EEeCCCCceEE-eecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEE
Q 019290          185 KYDPLKKNVTV-MYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIA  263 (343)
Q Consensus       185 ~~d~~~~~~~~-~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~  263 (343)
                      .+|..+++... +.........++++++++.++.+ ..++.|..|++.....   ...+.........+++.++| ++++
T Consensus       231 ~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~---~~~~~~~~~~i~~~~~~~~~-~l~~  305 (425)
T 1r5m_A          231 VYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSA-SDDGTLRIWHGGNGNS---QNCFYGHSQSIVSASWVGDD-KVIS  305 (425)
T ss_dssp             EEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEE-ETTSCEEEECSSSBSC---SEEECCCSSCEEEEEEETTT-EEEE
T ss_pred             EEEcCCCceeeeeccCCCceEEEEECCCCCEEEEE-cCCCEEEEEECCCCcc---ceEecCCCccEEEEEECCCC-EEEE
Confidence            89987665432 33334456789999999866555 4678999999765221   22222122234557788888 4444


Q ss_pred             eccCCCccccccccccccccCCCcccCCCeEEEECC-CCCEEEEeeCCCCCccCCceeEEEe-CCEEEEecCCCCeEEEE
Q 019290          264 MNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDV-NGNVVDVLDGNEGNTLNSVSEVQEY-GEYLYTGSSVQPYVVVI  341 (343)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~~~~i~~~  341 (343)
                      ...                        .+.|..+|. .++....+....    ..+..+... +++++++......|.++
T Consensus       306 ~~~------------------------d~~i~i~d~~~~~~~~~~~~~~----~~i~~~~~s~~~~~l~~~~~dg~i~i~  357 (425)
T 1r5m_A          306 CSM------------------------DGSVRLWSLKQNTLLALSIVDG----VPIFAGRISQDGQKYAVAFMDGQVNVY  357 (425)
T ss_dssp             EET------------------------TSEEEEEETTTTEEEEEEECTT----CCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             EeC------------------------CCcEEEEECCCCcEeEecccCC----ccEEEEEEcCCCCEEEEEECCCeEEEE
Confidence            433                        246777886 455555554322    234444433 45555555555667666


Q ss_pred             c
Q 019290          342 K  342 (343)
Q Consensus       342 ~  342 (343)
                      +
T Consensus       358 ~  358 (425)
T 1r5m_A          358 D  358 (425)
T ss_dssp             E
T ss_pred             E
Confidence            5

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.92  E-value=4.6e-08  Score=88.72  Aligned_cols=239  Identities=10%  Similarity=-0.106  Sum_probs=133.4

Q ss_pred             CccccccccCCCCCCCceEEEcCCCCeeEEEe----------cCCEEEEEEcCCCCeE-EeeecCCCccccccCCCCCcc
Q 019290           22 SSKSYQQLQLPGVVGPESLAFDCNGEGPYVGV----------SDGRILKWKAANSGWT-EFATTAPHRAREICDGSTNTT   90 (343)
Q Consensus        22 ~~~~~~~~~~~~~~~p~~l~~d~~g~~l~~~~----------~~g~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~   90 (343)
                      +.+.+.+++++.  .| ++++++||+.+|++.          .++.|..+|+.+.+.. .+.....             .
T Consensus        55 t~~v~~~i~vG~--~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~-------------~  118 (368)
T 1mda_H           55 CGVTLGHSLGAF--LS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDA-------------P  118 (368)
T ss_dssp             TTEEEEEEEECT--TC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTS-------------C
T ss_pred             CCeEEEEEeCCC--CC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCc-------------c
Confidence            356677777775  58 899999999899775          3577999999886543 3221000             0


Q ss_pred             cCCCcCCeeeEEEeCCCCeEEEEeCC--CeEEE--EeCCCCeEEEcccccCCCCccCcce----eEEeCCCCeEEEEeCC
Q 019290           91 LEPLCGRPLGIKFNPVTCDLYIADAY--FGLMV--VGPNGGQAQQLASSAGGIPFRFTND----LDIDPNTGIVYFTDSS  162 (343)
Q Consensus        91 ~~~~~~~p~gi~~~~~~~~l~v~~~~--~gi~~--~d~~~~~~~~~~~~~~~~~~~~~~~----i~~d~~dg~l~v~~~~  162 (343)
                      .......|++++++++++.+|+++..  +.+..  +|+.+  +..+. .... ....+.+    ++..+ ||++.+.+..
T Consensus       119 ~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t--v~~i~-v~~~-~~~~p~g~~~~~~~~~-dg~~~~vd~~  193 (368)
T 1mda_H          119 RFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD--DQLTK-SASC-FHIHPGAAATHYLGSC-PASLAASDLA  193 (368)
T ss_dssp             SCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE--EEEEE-CSSC-CCCEEEETTEEECCCC-TTSCEEEECC
T ss_pred             ccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh--ceEEE-CCCc-eEEccCCCeEEEEEcC-CCCEEEEECc
Confidence            00112458999999977789999753  34777  88876  33331 1100 0000111    22223 2333222221


Q ss_pred             c------cc--------ccccce------eeeeecCCCceEEEEeCCCCceEEeec----------CCCCcce---eEEe
Q 019290          163 I------YF--------QRRQYF------MSIATGDRSGRLLKYDPLKKNVTVMYN----------GLSFPNG---VALS  209 (343)
Q Consensus       163 ~------~~--------~~~~~~------~~~~~~~~~~~v~~~d~~~~~~~~~~~----------~~~~~~~---i~~~  209 (343)
                      .      ..        ......      ...+.... +.|+.+|..++..+.+..          ....|.+   ++++
T Consensus       194 ~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s  272 (368)
T 1mda_H          194 AAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKL  272 (368)
T ss_dssp             SSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEE
T ss_pred             cccccCCeEEEEeeeeeeCCCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEc
Confidence            1      00        000000      00011111 457777765433222110          1112344   8899


Q ss_pred             cCCCEEEEEEc-C-------CCeEEEEEccCccccccceeeecCCCCCCceeeCCCCC-EEEEec-cCCCcccccccccc
Q 019290          210 NNNSFLLLAES-A-------TLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGE-FWIAMN-SARGKIESNKKTAF  279 (343)
Q Consensus       210 ~d~~~lyv~~~-~-------~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-lwi~~~-~~~~~~~~~~~~~~  279 (343)
                      +|++.+|++.. .       .+.+.++|+.....   ...+ .....|.++++++||+ +|++++ .             
T Consensus       273 ~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~v---v~~i-~vg~~p~gi~~s~Dg~~l~va~~~~-------------  335 (368)
T 1mda_H          273 KNTDGIMILTVEHSRSCLAAAENTSSVTASVGQT---SGPI-SNGHDSDAIIAAQDGASDNYANSAG-------------  335 (368)
T ss_dssp             TTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCE---EECC-EEEEEECEEEECCSSSCEEEEEETT-------------
T ss_pred             CCCCEEEEEeccccCcccccCCCEEEEECCCCeE---EEEE-ECCCCcceEEECCCCCEEEEEccCC-------------
Confidence            99999999754 2       34677999765322   1111 1233599999999995 899987 4             


Q ss_pred             ccccCCCcccCCCeEEEECC-CCCEEEEeeCC
Q 019290          280 CEETAKPWFLRDPVGVKFDV-NGNVVDVLDGN  310 (343)
Q Consensus       280 ~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~~~  310 (343)
                                 .+.|..+|. .++.+..+...
T Consensus       336 -----------~~~VsVID~~t~kvv~~I~vg  356 (368)
T 1mda_H          336 -----------TEVLDIYDAASDQDQSSVELD  356 (368)
T ss_dssp             -----------TTEEEEEESSSCEEEEECCCC
T ss_pred             -----------CCeEEEEECCCCcEEEEEECC
Confidence                       358889997 57777776543

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=98.92  E-value=3.8e-07  Score=78.65  Aligned_cols=168  Identities=10%  Similarity=-0.003  Sum_probs=102.2

Q ss_pred             cCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCCCeEEEEeCCC-CeEEEc
Q 019290           54 SDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFGLMVVGPNG-GQAQQL  132 (343)
Q Consensus        54 ~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~~gi~~~d~~~-~~~~~~  132 (343)
                      .++.|+.+|..+++...+..                    ....+..+++++++..|+++ ....|+.+|.++ ++...+
T Consensus        20 ~~~~i~~~d~~~~~~~~~~~--------------------~~~~v~~~~~spdg~~l~~~-~~~~i~~~d~~~~~~~~~~   78 (297)
T 2ojh_A           20 MRSSIEIFNIRTRKMRVVWQ--------------------TPELFEAPNWSPDGKYLLLN-SEGLLYRLSLAGDPSPEKV   78 (297)
T ss_dssp             CCEEEEEEETTTTEEEEEEE--------------------ESSCCEEEEECTTSSEEEEE-ETTEEEEEESSSCCSCEEC
T ss_pred             cceeEEEEeCCCCceeeecc--------------------CCcceEeeEECCCCCEEEEE-cCCeEEEEeCCCCCCceEe
Confidence            46689999988876554432                    11245688999844455555 456799999998 776655


Q ss_pred             ccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEeecCCCCcceeEEecCC
Q 019290          133 ASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNN  212 (343)
Q Consensus       133 ~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~i~~~~d~  212 (343)
                      ....   ....+..+++.+ +|+.++.....             ......|+.++..+++...+.. ......+++++++
T Consensus        79 ~~~~---~~~~~~~~~~sp-dg~~l~~~~~~-------------~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~spdg  140 (297)
T 2ojh_A           79 DTGF---ATICNNDHGISP-DGALYAISDKV-------------EFGKSAIYLLPSTGGTPRLMTK-NLPSYWHGWSPDG  140 (297)
T ss_dssp             CCTT---CCCBCSCCEECT-TSSEEEEEECT-------------TTSSCEEEEEETTCCCCEECCS-SSSEEEEEECTTS
T ss_pred             cccc---ccccccceEECC-CCCEEEEEEeC-------------CCCcceEEEEECCCCceEEeec-CCCccceEECCCC
Confidence            3222   123567899999 47644433210             1124679999987776655433 2346778899999


Q ss_pred             CEEEEEEcCCCe--EEEEEccCccccccceeeecCCCCCCceeeCCCCC-EEEEe
Q 019290          213 SFLLLAESATLK--ILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGE-FWIAM  264 (343)
Q Consensus       213 ~~lyv~~~~~~~--i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-lwi~~  264 (343)
                      +.++++....+.  ||.++..+    .....+......+..++++++|+ ++++.
T Consensus       141 ~~l~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~s~dg~~l~~~~  191 (297)
T 2ojh_A          141 KSFTYCGIRDQVFDIYSMDIDS----GVETRLTHGEGRNDGPDYSPDGRWIYFNS  191 (297)
T ss_dssp             SEEEEEEEETTEEEEEEEETTT----CCEEECCCSSSCEEEEEECTTSSEEEEEE
T ss_pred             CEEEEEECCCCceEEEEEECCC----CcceEcccCCCccccceECCCCCEEEEEe
Confidence            988866555564  44444443    22223322233345677889987 44444

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=98.91  E-value=2.9e-06  Score=77.57  Aligned_cols=183  Identities=10%  Similarity=-0.029  Sum_probs=119.7

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      ...++++.++|+.++++..+|.|..||..+++.....                   ......+..+.++  +..++.+..
T Consensus       136 ~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-------------------~~~~~~v~~~~~~--~~~l~~~~~  194 (401)
T 4aez_A          136 YVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTM-------------------AGHQARVGCLSWN--RHVLSSGSR  194 (401)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE-------------------CCCSSCEEEEEEE--TTEEEEEET
T ss_pred             CEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEe-------------------cCCCCceEEEEEC--CCEEEEEcC
Confidence            5679999999998888889999999998776543221                   1122345677775  467777755


Q ss_pred             CCeEEEEeCCCC-eEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceE
Q 019290          116 YFGLMVVGPNGG-QAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVT  194 (343)
Q Consensus       116 ~~gi~~~d~~~~-~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~  194 (343)
                      ...|..+|.+.. .........    ...+..+++.+ ++.++++...                 .+.|..||..+++..
T Consensus       195 dg~i~i~d~~~~~~~~~~~~~~----~~~v~~~~~~~-~~~~l~s~~~-----------------d~~v~iwd~~~~~~~  252 (401)
T 4aez_A          195 SGAIHHHDVRIANHQIGTLQGH----SSEVCGLAWRS-DGLQLASGGN-----------------DNVVQIWDARSSIPK  252 (401)
T ss_dssp             TSEEEEEETTSSSCEEEEEECC----SSCEEEEEECT-TSSEEEEEET-----------------TSCEEEEETTCSSEE
T ss_pred             CCCEEEEecccCcceeeEEcCC----CCCeeEEEEcC-CCCEEEEEeC-----------------CCeEEEccCCCCCcc
Confidence            555899998743 222111111    13578899999 5776664432                 457888998766554


Q ss_pred             E-eecCCCCcceeEEecCCCEEEEEEc--CCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEec
Q 019290          195 V-MYNGLSFPNGVALSNNNSFLLLAES--ATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMN  265 (343)
Q Consensus       195 ~-~~~~~~~~~~i~~~~d~~~lyv~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~  265 (343)
                      . +.........+++++++..++++..  .++.|..|++.....   ...+ ........+++.++|+..++..
T Consensus       253 ~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~---~~~~-~~~~~v~~~~~s~~~~~l~~~~  322 (401)
T 4aez_A          253 FTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGAR---VNTV-DAGSQVTSLIWSPHSKEIMSTH  322 (401)
T ss_dssp             EEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCE---EEEE-ECSSCEEEEEECSSSSEEEEEE
T ss_pred             EEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCE---EEEE-eCCCcEEEEEECCCCCeEEEEe
Confidence            3 3334456789999998887887754  689999999875221   1122 2222345678889998777643

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=98.91  E-value=3.1e-07  Score=82.66  Aligned_cols=188  Identities=10%  Similarity=0.038  Sum_probs=117.8

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      ...++++.++|+.+.++..++.|..||..+++.....                   ......+..+++.+++..++++..
T Consensus       129 ~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~-------------------~~h~~~V~~~~~~~~~~~~l~s~s  189 (344)
T 4gqb_B          129 IVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSY-------------------RAHAAQVTCVAASPHKDSVFLSCS  189 (344)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE-------------------CCCSSCEEEEEECSSCTTEEEEEE
T ss_pred             CEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEE-------------------cCcCCceEEEEecCCCCCceeeec
Confidence            3578999999998888899999999999876543221                   112234678889884556665434


Q ss_pred             CCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCce-
Q 019290          116 YFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNV-  193 (343)
Q Consensus       116 ~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~-  193 (343)
                      .++ |..+|.++++........  .....+..+++.+.+++++++...                 .+.|..||..+++. 
T Consensus       190 ~D~~v~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~p~~~~~l~sg~~-----------------dg~v~~wd~~~~~~~  250 (344)
T 4gqb_B          190 EDNRILLWDTRCPKPASQIGCS--APGYLPTSLAWHPQQSEVFVFGDE-----------------NGTVSLVDTKSTSCV  250 (344)
T ss_dssp             TTSCEEEEETTSSSCEEECC------CCCEEEEEECSSCTTEEEEEET-----------------TSEEEEEESCC--CC
T ss_pred             cccccccccccccceeeeeecc--eeeccceeeeecCCCCcceEEecc-----------------CCcEEEEECCCCcEE
Confidence            444 899999877643322111  112346778888754566654322                 45688888876654 


Q ss_pred             EEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCC-EEEEec
Q 019290          194 TVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGE-FWIAMN  265 (343)
Q Consensus       194 ~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-lwi~~~  265 (343)
                      ..+.........++++|++..+.++.+.++.|..||...    ++...+..-.+....+++.++|. +.++..
T Consensus       251 ~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~----~~~~~~~~H~~~V~~v~~sp~~~~llas~s  319 (344)
T 4gqb_B          251 LSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSL----SELFRSQAHRDFVRDATWSPLNHSLLTTVG  319 (344)
T ss_dssp             EEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTC----CEEEEECCCSSCEEEEEECSSSTTEEEEEE
T ss_pred             EEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCC----CcEEEEcCCCCCEEEEEEeCCCCeEEEEEc
Confidence            334444456788999999876666767789999999765    22222211122244577888874 554443

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=98.90  E-value=2.8e-07  Score=91.15  Aligned_cols=159  Identities=13%  Similarity=0.060  Sum_probs=96.3

Q ss_pred             CCceEEEcCCCCeeEEEec-CC-----EEEEEEcCCCCeEEeeecCCCc-cccccCCCCCcccCC----CcCCeeeEEEe
Q 019290           36 GPESLAFDCNGEGPYVGVS-DG-----RILKWKAANSGWTEFATTAPHR-AREICDGSTNTTLEP----LCGRPLGIKFN  104 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~-~g-----~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~p~gi~~~  104 (343)
                      .+.++++++||+.+++... ++     .|+.+|..+++...+....... ...............    ....+..++++
T Consensus        38 ~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~S  117 (741)
T 2ecf_A           38 TLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWS  117 (741)
T ss_dssp             CCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEEC
T ss_pred             CCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEEC
Confidence            5789999999997776655 66     8999999888766554221100 000000000000000    00124578899


Q ss_pred             CCCCeEEEEeCCCeEEEEeCCCC---eEEEcccccCCCCccCcceeEEeCCCCe-EEEEeCCcccccccceeeeeecCCC
Q 019290          105 PVTCDLYIADAYFGLMVVGPNGG---QAQQLASSAGGIPFRFTNDLDIDPNTGI-VYFTDSSIYFQRRQYFMSIATGDRS  180 (343)
Q Consensus       105 ~~~~~l~v~~~~~gi~~~d~~~~---~~~~~~~~~~~~~~~~~~~i~~d~~dg~-l~v~~~~~~~~~~~~~~~~~~~~~~  180 (343)
                      +++..|+++. ...|+.+|.+++   +.+.+...     ...+..+++.| ||+ |.++.                   .
T Consensus       118 pDg~~l~~~~-~~~i~~~d~~~~~~~~~~~l~~~-----~~~~~~~~~SP-DG~~la~~~-------------------~  171 (741)
T 2ecf_A          118 PDAQRLLFPL-GGELYLYDLKQEGKAAVRQLTHG-----EGFATDAKLSP-KGGFVSFIR-------------------G  171 (741)
T ss_dssp             TTSSEEEEEE-TTEEEEEESSSCSTTSCCBCCCS-----SSCEEEEEECT-TSSEEEEEE-------------------T
T ss_pred             CCCCEEEEEe-CCcEEEEECCCCCcceEEEcccC-----CcccccccCCC-CCCEEEEEe-------------------C
Confidence            9555677775 467999999887   55443221     13467889999 576 44422                   2


Q ss_pred             ceEEEEeCCCCceEEeecCCCC-----------------cceeEEecCCCEEEEEEc
Q 019290          181 GRLLKYDPLKKNVTVMYNGLSF-----------------PNGVALSNNNSFLLLAES  220 (343)
Q Consensus       181 ~~v~~~d~~~~~~~~~~~~~~~-----------------~~~i~~~~d~~~lyv~~~  220 (343)
                      +.|+.+|..+++...+......                 ...++++|||+.|+++..
T Consensus       172 ~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~  228 (741)
T 2ecf_A          172 RNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARI  228 (741)
T ss_dssp             TEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEE
T ss_pred             CcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEE
Confidence            3699999887776655433221                 467899999998887754

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=98.90  E-value=3.8e-06  Score=73.76  Aligned_cols=156  Identities=11%  Similarity=0.047  Sum_probs=103.1

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      ...++++.|+|..+.++..++.|..||..++.......                   ........+.+.++++.|..+..
T Consensus        15 ~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~-------------------~~~~~v~~~~~~~~~~~l~s~s~   75 (304)
T 2ynn_A           15 RVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQ-------------------VTETPVRAGKFIARKNWIIVGSD   75 (304)
T ss_dssp             CEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE-------------------CCSSCEEEEEEEGGGTEEEEEET
T ss_pred             ceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEee-------------------ccCCcEEEEEEeCCCCEEEEECC
Confidence            47899999999988888999999999988764322111                   11123567888884555666654


Q ss_pred             CCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCC-ceE
Q 019290          116 YFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKK-NVT  194 (343)
Q Consensus       116 ~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~-~~~  194 (343)
                      ...|..+|.++++........    ...+..+++.+ ++.+.++...                 .+.|..+|..++ ...
T Consensus        76 d~~i~vwd~~~~~~~~~~~~h----~~~v~~~~~~~-~~~~l~sgs~-----------------D~~v~lWd~~~~~~~~  133 (304)
T 2ynn_A           76 DFRIRVFNYNTGEKVVDFEAH----PDYIRSIAVHP-TKPYVLSGSD-----------------DLTVKLWNWENNWALE  133 (304)
T ss_dssp             TSEEEEEETTTCCEEEEEECC----SSCEEEEEECS-SSSEEEEEET-----------------TSCEEEEEGGGTTEEE
T ss_pred             CCEEEEEECCCCcEEEEEeCC----CCcEEEEEEcC-CCCEEEEECC-----------------CCeEEEEECCCCcchh
Confidence            445999999887654322221    13578999999 5776665433                 456777886654 222


Q ss_pred             -EeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290          195 -VMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQG  232 (343)
Q Consensus       195 -~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~  232 (343)
                       .+.........++++|++..++++...++.|..|++..
T Consensus       134 ~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~  172 (304)
T 2ynn_A          134 QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ  172 (304)
T ss_dssp             EEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTC
T ss_pred             hhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCC
Confidence             23333345678999985434556666789999999864

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.90  E-value=7.3e-07  Score=81.86  Aligned_cols=201  Identities=9%  Similarity=-0.014  Sum_probs=115.7

Q ss_pred             CCCCCceEEEcCCCCeeEEEecC------CEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCC
Q 019290           33 GVVGPESLAFDCNGEGPYVGVSD------GRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPV  106 (343)
Q Consensus        33 ~~~~p~~l~~d~~g~~l~~~~~~------g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~  106 (343)
                      +...|+.+...++| ++.+...+      +++..+|.++.+...-....                ......+.++.+.++
T Consensus       136 g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~----------------~~~~~~~Yd~~~~p~  198 (462)
T 2ece_A          136 GYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEID----------------RGDQYLAYDFWWNLP  198 (462)
T ss_dssp             CEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSB----------------CTTCCCCCCEEEETT
T ss_pred             CCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccC----------------CCCccccceEEECCC
Confidence            44579999999999 44433333      68999999886644321100                011122445777884


Q ss_pred             CCeEEEEeC-------------------CCeEEEEeCCCCeEEEcccccCCCCccCcceeEE--eCCCCeEEEEeCCccc
Q 019290          107 TCDLYIADA-------------------YFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDI--DPNTGIVYFTDSSIYF  165 (343)
Q Consensus       107 ~~~l~v~~~-------------------~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~--d~~dg~l~v~~~~~~~  165 (343)
                      .+.++++++                   .+.|..+|.++++........  .....+..+.+  +++...+|++..-+. 
T Consensus       199 ~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg--~~g~~P~~i~f~~~Pdg~~aYV~~e~~~-  275 (462)
T 2ece_A          199 NEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLG--EENRMALELRPLHDPTKLMGFINMVVSL-  275 (462)
T ss_dssp             TTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESC--TTEEEEEEEEECSSTTCCEEEEEEEEET-
T ss_pred             CCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecC--CCCCccceeEeeECCCCCEEEEEEeeec-
Confidence            555555542                   356999999887654432221  11234666655  884345777653000 


Q ss_pred             ccccceeeeeecCCCceEEEEeCCCCceEEee-----c-----C-----------CCCcceeEEecCCCEEEEEEcCCCe
Q 019290          166 QRRQYFMSIATGDRSGRLLKYDPLKKNVTVMY-----N-----G-----------LSFPNGVALSNNNSFLLLAESATLK  224 (343)
Q Consensus       166 ~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~-----~-----~-----------~~~~~~i~~~~d~~~lyv~~~~~~~  224 (343)
                                 ..-.+.|+++..+.++.....     .     .           ...+.+|.+++|+++||+++...+.
T Consensus       276 -----------~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~  344 (462)
T 2ece_A          276 -----------KDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGE  344 (462)
T ss_dssp             -----------TTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTE
T ss_pred             -----------cCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCE
Confidence                       000334443322224322110     0     0           2457899999999999999999999


Q ss_pred             EEEEEccCccccccceeee-c-------------CCCCCCceeeCCCCC-EEEEe
Q 019290          225 ILRFWLQGERTTYTPQLFA-E-------------MPRFPDNIKSDSKGE-FWIAM  264 (343)
Q Consensus       225 i~~~~~~~~~~~~~~~~~~-~-------------~~~~p~~i~~d~~G~-lwi~~  264 (343)
                      |.+|++...........+. .             ..+.|.++.+++||+ ||++.
T Consensus       345 VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          345 VRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             EEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             EEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            9999986332101111111 0             112499999999995 66665

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=98.89  E-value=3.8e-07  Score=90.27  Aligned_cols=202  Identities=10%  Similarity=0.101  Sum_probs=117.8

Q ss_pred             CceEEEcCCCCeeEEEecCCEEEEEEcCCC---CeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEE
Q 019290           37 PESLAFDCNGEGPYVGVSDGRILKWKAANS---GWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIA  113 (343)
Q Consensus        37 p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~  113 (343)
                      ..++++++||+.+++... +.|+.+|..++   ....+.                    .....+..++++++++.|.++
T Consensus       111 v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~--------------------~~~~~~~~~~~SPDG~~la~~  169 (741)
T 2ecf_A          111 IVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLT--------------------HGEGFATDAKLSPKGGFVSFI  169 (741)
T ss_dssp             SCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCC--------------------CSSSCEEEEEECTTSSEEEEE
T ss_pred             cceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcc--------------------cCCcccccccCCCCCCEEEEE
Confidence            578999999996666554 88999998876   433221                    122346788999955557666


Q ss_pred             eCCCeEEEEeCCCCeEEEcccccCCC------------CccCcceeEEeCCCCe-EEEEeCCc-cccc------------
Q 019290          114 DAYFGLMVVGPNGGQAQQLASSAGGI------------PFRFTNDLDIDPNTGI-VYFTDSSI-YFQR------------  167 (343)
Q Consensus       114 ~~~~gi~~~d~~~~~~~~~~~~~~~~------------~~~~~~~i~~d~~dg~-l~v~~~~~-~~~~------------  167 (343)
                      . ...|+.+|.++++...+.......            ....+.++++.+ ||+ |+++.... ....            
T Consensus       170 ~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~Sp-Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~  247 (741)
T 2ecf_A          170 R-GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAP-DDSAIAYARIDESPVPVQKRYEVYADRTD  247 (741)
T ss_dssp             E-TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECT-TSSCEEEEEEECTTSCEEEEEEECSSCEE
T ss_pred             e-CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECC-CCCEEEEEEEcCCCCceEecCCCCCCccc
Confidence            4 457999999988877654321110            011246789999 566 55543210 0000            


Q ss_pred             -ccceeeee-ecCCCceEEEEeCCC-CceEEeecC---CCCcceeEEecCCCEEEEEEc----CCCeEEEEEccCccccc
Q 019290          168 -RQYFMSIA-TGDRSGRLLKYDPLK-KNVTVMYNG---LSFPNGVALSNNNSFLLLAES----ATLKILRFWLQGERTTY  237 (343)
Q Consensus       168 -~~~~~~~~-~~~~~~~v~~~d~~~-~~~~~~~~~---~~~~~~i~~~~d~~~lyv~~~----~~~~i~~~~~~~~~~~~  237 (343)
                       ....+... .......|+.+|.++ ++...+...   ......+++ +||+.|+++..    ....|+++++.+.    
T Consensus       248 ~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g----  322 (741)
T 2ecf_A          248 VIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASN----  322 (741)
T ss_dssp             EEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTC----
T ss_pred             ceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCC----
Confidence             00000000 000122688899887 776554322   233567889 99998887653    2467888987652    


Q ss_pred             cceeeec--CCC---CCCceeeCCCCCEEEEecc
Q 019290          238 TPQLFAE--MPR---FPDNIKSDSKGEFWIAMNS  266 (343)
Q Consensus       238 ~~~~~~~--~~~---~p~~i~~d~~G~lwi~~~~  266 (343)
                      +...+..  ..+   ....+++.+||+++++...
T Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~  356 (741)
T 2ecf_A          323 QQRVLAHETSPTWVPLHNSLRFLDDGSILWSSER  356 (741)
T ss_dssp             CEEEEEEEECSSCCCCCSCCEECTTSCEEEEECT
T ss_pred             ceEEEEEcCCCCcCCcCCceEECCCCeEEEEecC
Confidence            2222221  111   1346788999986665544

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=98.89  E-value=2.1e-06  Score=76.20  Aligned_cols=186  Identities=13%  Similarity=0.097  Sum_probs=121.4

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      ...++++.++|+.+.++..++.+..|+..+++......                   ........+++++++..|..+..
T Consensus       124 ~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~-------------------~~~~~v~~~~~spdg~~lasg~~  184 (321)
T 3ow8_A          124 DAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLD-------------------TRGKFILSIAYSPDGKYLASGAI  184 (321)
T ss_dssp             CCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEE-------------------CSSSCEEEEEECTTSSEEEEEET
T ss_pred             cEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEec-------------------CCCceEEEEEECCCCCEEEEEcC
Confidence            46689999999988888999999999987765432211                   11223568899984445555543


Q ss_pred             CCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEE
Q 019290          116 YFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTV  195 (343)
Q Consensus       116 ~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~  195 (343)
                      ...|..+|.++++........    ...+..+++.+ ++.+.++...                 .+.|..||..+++...
T Consensus       185 dg~i~iwd~~~~~~~~~~~~h----~~~v~~l~~sp-d~~~l~s~s~-----------------dg~i~iwd~~~~~~~~  242 (321)
T 3ow8_A          185 DGIINIFDIATGKLLHTLEGH----AMPIRSLTFSP-DSQLLVTASD-----------------DGYIKIYDVQHANLAG  242 (321)
T ss_dssp             TSCEEEEETTTTEEEEEECCC----SSCCCEEEECT-TSCEEEEECT-----------------TSCEEEEETTTCCEEE
T ss_pred             CCeEEEEECCCCcEEEEEccc----CCceeEEEEcC-CCCEEEEEcC-----------------CCeEEEEECCCcceeE
Confidence            344999999988754332211    13478899999 5887775543                 4568888887665543


Q ss_pred             -eecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEecc
Q 019290          196 -MYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNS  266 (343)
Q Consensus       196 -~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~~  266 (343)
                       +.........++++|++..++ +...++.|..|++....   ....+.........++++++|+..++...
T Consensus       243 ~~~~h~~~v~~~~~sp~~~~l~-s~s~D~~v~iwd~~~~~---~~~~~~~h~~~v~~v~~s~~g~~l~s~~~  310 (321)
T 3ow8_A          243 TLSGHASWVLNVAFCPDDTHFV-SSSSDKSVKVWDVGTRT---CVHTFFDHQDQVWGVKYNGNGSKIVSVGD  310 (321)
T ss_dssp             EECCCSSCEEEEEECTTSSEEE-EEETTSCEEEEETTTTE---EEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             EEcCCCCceEEEEECCCCCEEE-EEeCCCcEEEEeCCCCE---EEEEEcCCCCcEEEEEECCCCCEEEEEeC
Confidence             333344567899999998655 44568899999986521   12222222222445778888877776554

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=98.89  E-value=5.9e-06  Score=75.41  Aligned_cols=235  Identities=14%  Similarity=0.101  Sum_probs=138.0

Q ss_pred             CceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCC
Q 019290           37 PESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAY  116 (343)
Q Consensus        37 p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~  116 (343)
                      ..++++.++|+.+.++..++.|..||..+++......                   .....+..+++.+++..|+.+...
T Consensus       126 v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~-------------------~h~~~v~~~~~~p~~~~l~s~s~d  186 (393)
T 1erj_A          126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQ-------------------GHEQDIYSLDYFPSGDKLVSGSGD  186 (393)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-------------------CCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEc-------------------cCCCCEEEEEEcCCCCEEEEecCC
Confidence            4589999999988888899999999988765433211                   122346789999844556666444


Q ss_pred             CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEe
Q 019290          117 FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVM  196 (343)
Q Consensus       117 ~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~  196 (343)
                      ..+..+|.++++.......     ...+..+++.+.+++++++...                 .+.|..||..++.....
T Consensus       187 ~~v~iwd~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~l~~~s~-----------------d~~v~iwd~~~~~~~~~  244 (393)
T 1erj_A          187 RTVRIWDLRTGQCSLTLSI-----EDGVTTVAVSPGDGKYIAAGSL-----------------DRAVRVWDSETGFLVER  244 (393)
T ss_dssp             SEEEEEETTTTEEEEEEEC-----SSCEEEEEECSTTCCEEEEEET-----------------TSCEEEEETTTCCEEEE
T ss_pred             CcEEEEECCCCeeEEEEEc-----CCCcEEEEEECCCCCEEEEEcC-----------------CCcEEEEECCCCcEEEe
Confidence            4488999988875433221     1246678888744666664432                 45688888776654322


Q ss_pred             e--------cCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCcccccc--------c-eeeecCCCCCCceeeCCCCC
Q 019290          197 Y--------NGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYT--------P-QLFAEMPRFPDNIKSDSKGE  259 (343)
Q Consensus       197 ~--------~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~--------~-~~~~~~~~~p~~i~~d~~G~  259 (343)
                      .        ........++++++++.++ +...++.|..|++........        . ..+.........+++.++|.
T Consensus       245 ~~~~~~~~~~h~~~v~~v~~~~~g~~l~-s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  323 (393)
T 1erj_A          245 LDSENESGTGHKDSVYSVVFTRDGQSVV-SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDE  323 (393)
T ss_dssp             EC------CCCSSCEEEEEECTTSSEEE-EEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGC
T ss_pred             ecccccCCCCCCCCEEEEEECCCCCEEE-EEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCC
Confidence            1        1223467899999998665 455688999999864211000        0 01111111223456778887


Q ss_pred             EEEEeccCCCccccccccccccccCCCcccCCCeEEEECC-CCCEEEEeeCCCCCccCCceeEEEe-------CCEEEEe
Q 019290          260 FWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDV-NGNVVDVLDGNEGNTLNSVSEVQEY-------GEYLYTG  331 (343)
Q Consensus       260 lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~~-------~g~l~i~  331 (343)
                      +.++...                        .+.|..+|. .++.+..+.....    .+..+...       +++++++
T Consensus       324 ~l~sgs~------------------------D~~v~iwd~~~~~~~~~l~~h~~----~v~~v~~~~~~~~~p~~~~l~s  375 (393)
T 1erj_A          324 YILSGSK------------------------DRGVLFWDKKSGNPLLMLQGHRN----SVISVAVANGSSLGPEYNVFAT  375 (393)
T ss_dssp             EEEEEET------------------------TSEEEEEETTTCCEEEEEECCSS----CEEEEEECSSCTTCTTCEEEEE
T ss_pred             EEEEEeC------------------------CCeEEEEECCCCeEEEEECCCCC----CEEEEEecCCcCcCCCCCEEEE
Confidence            6666554                        346777886 4666655543222    23333322       3566666


Q ss_pred             cCCCCeEEEE
Q 019290          332 SSVQPYVVVI  341 (343)
Q Consensus       332 ~~~~~~i~~~  341 (343)
                      +.....|.+.
T Consensus       376 gs~Dg~i~iW  385 (393)
T 1erj_A          376 GSGDCKARIW  385 (393)
T ss_dssp             EETTSEEEEE
T ss_pred             ECCCCcEEEC
Confidence            6555555544

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=98.87  E-value=3.6e-06  Score=77.37  Aligned_cols=153  Identities=9%  Similarity=0.037  Sum_probs=103.0

Q ss_pred             CceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCC
Q 019290           37 PESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAY  116 (343)
Q Consensus        37 p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~  116 (343)
                      ..++++.+++..+.++..++.|..||..+++.....                   ......+..+++++ ++.++++...
T Consensus       111 V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l-------------------~~h~~~V~~v~~~~-~~~~l~sgs~  170 (410)
T 1vyh_C          111 VTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTL-------------------KGHTDSVQDISFDH-SGKLLASCSA  170 (410)
T ss_dssp             EEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEE-------------------CCCSSCEEEEEECT-TSSEEEEEET
T ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEE-------------------eccCCcEEEEEEcC-CCCEEEEEeC
Confidence            558999999998888899999999998876543221                   11223467899998 5554444334


Q ss_pred             Ce-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceE-
Q 019290          117 FG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVT-  194 (343)
Q Consensus       117 ~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-  194 (343)
                      ++ |..+|.++++........    ...+..+++.+ ++...++...                 .+.|..||..++... 
T Consensus       171 D~~i~iwd~~~~~~~~~~~~h----~~~V~~v~~~p-~~~~l~s~s~-----------------D~~i~~wd~~~~~~~~  228 (410)
T 1vyh_C          171 DMTIKLWDFQGFECIRTMHGH----DHNVSSVSIMP-NGDHIVSASR-----------------DKTIKMWEVQTGYCVK  228 (410)
T ss_dssp             TSCCCEEETTSSCEEECCCCC----SSCEEEEEECS-SSSEEEEEET-----------------TSEEEEEETTTCCEEE
T ss_pred             CCeEEEEeCCCCceeEEEcCC----CCCEEEEEEeC-CCCEEEEEeC-----------------CCeEEEEECCCCcEEE
Confidence            44 888898876644332221    13578899999 4776664433                 467888898776643 


Q ss_pred             EeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290          195 VMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQG  232 (343)
Q Consensus       195 ~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~  232 (343)
                      .+.........+++++++..+ ++...++.|..|++..
T Consensus       229 ~~~~h~~~v~~~~~~~~g~~l-~s~s~D~~v~vwd~~~  265 (410)
T 1vyh_C          229 TFTGHREWVRMVRPNQDGTLI-ASCSNDQTVRVWVVAT  265 (410)
T ss_dssp             EEECCSSCEEEEEECTTSSEE-EEEETTSCEEEEETTT
T ss_pred             EEeCCCccEEEEEECCCCCEE-EEEcCCCeEEEEECCC
Confidence            333344456778888988754 4555688999999865

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=98.87  E-value=9.2e-06  Score=71.26  Aligned_cols=155  Identities=11%  Similarity=0.096  Sum_probs=103.2

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      ...++++.++|+.+.++..++.|..||..+++......                   ........+.++++++.|+.+..
T Consensus        67 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~-------------------~~~~~v~~~~~~~~~~~l~s~~~  127 (312)
T 4ery_A           67 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-------------------GHSNYVFCCNFNPQSNLIVSGSF  127 (312)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-------------------CCSSCEEEEEECSSSSEEEEEET
T ss_pred             ceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEc-------------------CCCCCEEEEEEcCCCCEEEEEeC
Confidence            46789999999988888899999999988765432211                   12234567889884445555543


Q ss_pred             CCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEE
Q 019290          116 YFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTV  195 (343)
Q Consensus       116 ~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~  195 (343)
                      ...|..+|.++++........    ...+..+++.+ ++.++++...                 .+.|..||..+++...
T Consensus       128 d~~i~iwd~~~~~~~~~~~~~----~~~v~~~~~~~-~~~~l~~~~~-----------------d~~i~~wd~~~~~~~~  185 (312)
T 4ery_A          128 DESVRIWDVKTGKCLKTLPAH----SDPVSAVHFNR-DGSLIVSSSY-----------------DGLCRIWDTASGQCLK  185 (312)
T ss_dssp             TSCEEEEETTTCCEEEEECCC----SSCEEEEEECT-TSSEEEEEET-----------------TSCEEEEETTTCCEEE
T ss_pred             CCcEEEEECCCCEEEEEecCC----CCcEEEEEEcC-CCCEEEEEeC-----------------CCcEEEEECCCCceee
Confidence            344999999877644322211    13467889998 4776664432                 4568888887665432


Q ss_pred             -eec-CCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290          196 -MYN-GLSFPNGVALSNNNSFLLLAESATLKILRFWLQG  232 (343)
Q Consensus       196 -~~~-~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~  232 (343)
                       +.. .......++++++++.++.+ ..++.|..|++..
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~l~~~-~~d~~i~iwd~~~  223 (312)
T 4ery_A          186 TLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWDYSK  223 (312)
T ss_dssp             EECCSSCCCEEEEEECTTSSEEEEE-ETTTEEEEEETTT
T ss_pred             EEeccCCCceEEEEECCCCCEEEEE-cCCCeEEEEECCC
Confidence             222 22345678999999876655 4678999999865

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=98.86  E-value=1.3e-06  Score=79.17  Aligned_cols=193  Identities=14%  Similarity=0.101  Sum_probs=124.0

Q ss_pred             CCceEEEcCCC-CeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCC-CeEEEE
Q 019290           36 GPESLAFDCNG-EGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVT-CDLYIA  113 (343)
Q Consensus        36 ~p~~l~~d~~g-~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~-~~l~v~  113 (343)
                      ...++++.++| +.+.++..++.|..||..+++.......                 ......+..+++.+.+ ..|+.+
T Consensus        75 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-----------------~~h~~~v~~~~~~~~~~~~l~s~  137 (383)
T 3ei3_B           75 RVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQG-----------------MGPGDAITGMKFNQFNTNQLFVS  137 (383)
T ss_dssp             CEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECC-----------------CSTTCBEEEEEEETTEEEEEEEE
T ss_pred             CEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeec-----------------CCcCCceeEEEeCCCCCCEEEEE
Confidence            56799999998 7788888999999999987655443210                 0123356789998833 445555


Q ss_pred             eCCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCce
Q 019290          114 DAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNV  193 (343)
Q Consensus       114 ~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~  193 (343)
                      .....|..+|.++.....+.... . ....+..+++.+ ++.+.++...                 .+.|..+|......
T Consensus       138 ~~d~~i~iwd~~~~~~~~~~~~~-~-~~~~v~~~~~~~-~~~~l~~~~~-----------------d~~i~i~d~~~~~~  197 (383)
T 3ei3_B          138 SIRGATTLRDFSGSVIQVFAKTD-S-WDYWYCCVDVSV-SRQMLATGDS-----------------TGRLLLLGLDGHEI  197 (383)
T ss_dssp             ETTTEEEEEETTSCEEEEEECCC-C-SSCCEEEEEEET-TTTEEEEEET-----------------TSEEEEEETTSCEE
T ss_pred             eCCCEEEEEECCCCceEEEeccC-C-CCCCeEEEEECC-CCCEEEEECC-----------------CCCEEEEECCCCEE
Confidence            44445899999876655443211 1 124578899999 4776654332                 46788899865555


Q ss_pred             EEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccc-eeeecCCCCCCceeeCC-CCCEEEEecc
Q 019290          194 TVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTP-QLFAEMPRFPDNIKSDS-KGEFWIAMNS  266 (343)
Q Consensus       194 ~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~p~~i~~d~-~G~lwi~~~~  266 (343)
                      ..+.........++++++++.++++...++.|..|++......... ..+ ........+++++ +|++.++...
T Consensus       198 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~  271 (383)
T 3ei3_B          198 FKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQ  271 (383)
T ss_dssp             EEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEES
T ss_pred             EEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcC
Confidence            5555555667899999998845556667889999998752210111 111 2223345577888 8876665544

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=98.86  E-value=1.3e-06  Score=85.92  Aligned_cols=255  Identities=14%  Similarity=0.106  Sum_probs=139.7

Q ss_pred             CCCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEe
Q 019290           35 VGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIAD  114 (343)
Q Consensus        35 ~~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~  114 (343)
                      ..+.++++++++. +.++ .++.|+.+|..+++...+..                    ....+..+++++++..|.++ 
T Consensus        82 ~~v~~~~~spd~~-~~~~-~~~~i~~~d~~~~~~~~l~~--------------------~~~~~~~~~~SpdG~~la~~-  138 (706)
T 2z3z_A           82 FPSFRTLDAGRGL-VVLF-TQGGLVGFDMLARKVTYLFD--------------------TNEETASLDFSPVGDRVAYV-  138 (706)
T ss_dssp             CCCEEEEETTTTE-EEEE-ETTEEEEEETTTTEEEEEEC--------------------CTTCCTTCEECTTSSEEEEE-
T ss_pred             cCceeEEECCCCe-EEEE-ECCEEEEEECCCCceEEccC--------------------CcccccCCcCCCCCCEEEEE-
Confidence            3578999999944 4433 45899999998876554431                    11234567888844566665 


Q ss_pred             CCCeEEEEeCCC-----CeEEEcccccCC----------CCccCcceeEEeCCCCe-EEEEeC--Ccc--ccc-------
Q 019290          115 AYFGLMVVGPNG-----GQAQQLASSAGG----------IPFRFTNDLDIDPNTGI-VYFTDS--SIY--FQR-------  167 (343)
Q Consensus       115 ~~~gi~~~d~~~-----~~~~~~~~~~~~----------~~~~~~~~i~~d~~dg~-l~v~~~--~~~--~~~-------  167 (343)
                      ....|+.++.++     ++...+......          .....+.++++.| ||+ |+++..  ...  +..       
T Consensus       139 ~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~Sp-Dg~~la~~~~d~~~~~~~~~~~~~~~~  217 (706)
T 2z3z_A          139 RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSP-KGSCLAFYRMDQSMVKPTPIVDYHPLE  217 (706)
T ss_dssp             ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECT-TSSEEEEEEEECTTSCCEEEEECCSSS
T ss_pred             ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECC-CCCEEEEEEECCCCCceEEeeccCCCC
Confidence            356799999988     776654322111          0112257889999 576 444321  000  000       


Q ss_pred             ---ccceeeee-ecCCCceEEEEeCCCCceEEeecC---CCCcceeEEecCCCEEEEEEcCC----CeEEEEEccCcccc
Q 019290          168 ---RQYFMSIA-TGDRSGRLLKYDPLKKNVTVMYNG---LSFPNGVALSNNNSFLLLAESAT----LKILRFWLQGERTT  236 (343)
Q Consensus       168 ---~~~~~~~~-~~~~~~~v~~~d~~~~~~~~~~~~---~~~~~~i~~~~d~~~lyv~~~~~----~~i~~~~~~~~~~~  236 (343)
                         ....+... .......|+.+|.++++...+...   ......+++++||+.++++....    ..|+.+++.+..  
T Consensus       218 ~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~--  295 (706)
T 2z3z_A          218 AESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGR--  295 (706)
T ss_dssp             CEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCC--
T ss_pred             CceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCc--
Confidence               00000000 011235699999988876654422   12356789999999888865432    388999987531  


Q ss_pred             ccceeee-c-CCC---CCCceeeCC--CCCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECCCCCEEEEeeC
Q 019290          237 YTPQLFA-E-MPR---FPDNIKSDS--KGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDG  309 (343)
Q Consensus       237 ~~~~~~~-~-~~~---~p~~i~~d~--~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~  309 (343)
                       ..+.+. . ...   ....+++.+  +|++.++....+                      ...|+.++.+++....+..
T Consensus       296 -~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g----------------------~~~l~~~~~~~~~~~~l~~  352 (706)
T 2z3z_A          296 -FVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDG----------------------WNHLYLYDTTGRLIRQVTK  352 (706)
T ss_dssp             -EEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTS----------------------SCEEEEEETTSCEEEECCC
T ss_pred             -eeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCC----------------------ccEEEEEECCCCEEEecCC
Confidence             222222 1 111   124578888  887555443312                      1267777766666555532


Q ss_pred             CCCCccCCcee-EE--EeCCEEEEecCCCC----eEEEEc
Q 019290          310 NEGNTLNSVSE-VQ--EYGEYLYTGSSVQP----YVVVIK  342 (343)
Q Consensus       310 ~~~~~~~~~~~-~~--~~~g~l~i~~~~~~----~i~~~~  342 (343)
                      ...    .+.. +.  ++++.||+++...+    .|.+++
T Consensus       353 ~~~----~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d  388 (706)
T 2z3z_A          353 GEW----EVTNFAGFDPKGTRLYFESTEASPLERHFYCID  388 (706)
T ss_dssp             SSS----CEEEEEEECTTSSEEEEEESSSCTTCBEEEEEE
T ss_pred             CCe----EEEeeeEEcCCCCEEEEEecCCCCceEEEEEEE
Confidence            211    1221 22  23456776665543    555543

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=98.86  E-value=2.7e-07  Score=86.18  Aligned_cols=179  Identities=15%  Similarity=0.146  Sum_probs=102.7

Q ss_pred             CCCCCceEEEcCCCC-eeEEEecCCEEEEEEcCCCC-eEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCC---C
Q 019290           33 GVVGPESLAFDCNGE-GPYVGVSDGRILKWKAANSG-WTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPV---T  107 (343)
Q Consensus        33 ~~~~p~~l~~d~~g~-~l~~~~~~g~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~---~  107 (343)
                      ++..|..|++.++|. .+|++...|+|+.+++++.. ...+.......    ..+    ..........||+++++   +
T Consensus        12 gL~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~----~~g----~~~~~e~Gllgia~~P~f~~n   83 (463)
T 2wg3_C           12 GLRQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLV----QSG----IKGGDERGLLSLAFHPNYKKN   83 (463)
T ss_dssp             EESSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTB----CCC----CSSSCCCSEEEEEECTTHHHH
T ss_pred             CCCCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCccee----ccC----ccccCCCcceeeEeCCCCcCC
Confidence            567899999999985 57888889999999865431 11121111000    000    00011245689999983   4


Q ss_pred             CeEEEEeCC-------------CeEEEEeCCCC--------eEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccc
Q 019290          108 CDLYIADAY-------------FGLMVVGPNGG--------QAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQ  166 (343)
Q Consensus       108 ~~l~v~~~~-------------~gi~~~d~~~~--------~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~  166 (343)
                      +.||++-+.             +.|.++....+        ..+.+..............|++++ ||.|||+.......
T Consensus        84 ~~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgp-DG~LYv~~Gd~~~~  162 (463)
T 2wg3_C           84 GKLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGP-DGFLYIILGDGMIT  162 (463)
T ss_dssp             CEEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECT-TSCEEEEECCTTCC
T ss_pred             CEEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECC-CCcEEEEeCCCCCC
Confidence            789987421             25777765321        122332222122234567899999 79999987543210


Q ss_pred             cccceeeeeecCCCceEEEEeCCCC--------------------ceEEeecCCCCcceeEEecCC-----C-EEEEEEc
Q 019290          167 RRQYFMSIATGDRSGRLLKYDPLKK--------------------NVTVMYNGLSFPNGVALSNNN-----S-FLLLAES  220 (343)
Q Consensus       167 ~~~~~~~~~~~~~~~~v~~~d~~~~--------------------~~~~~~~~~~~~~~i~~~~d~-----~-~lyv~~~  220 (343)
                      ..............++|+|+++++.                    ..+.+..+++.|.++++++..     + .+|+++.
T Consensus       163 ~~~~~~~q~~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RNp~gla~dp~tg~~~G~l~~~~~D~  242 (463)
T 2wg3_C          163 LDDMEEMDGLSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHDPGRCAVDRHPTDININLTILCSDS  242 (463)
T ss_dssp             HHHHHHCTTCCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSSCCBEEEESSCSSTTCSEEEEEECC
T ss_pred             CCccccccCcCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCCcceEEECCCCCCcccceEEEeccc
Confidence            0000000000122578999999863                    234566788899999999872     2 4666654

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.84  E-value=3.1e-07  Score=83.21  Aligned_cols=225  Identities=11%  Similarity=0.053  Sum_probs=118.5

Q ss_pred             ccccccccCC-----CCCCCceEEEcCCCCeeEEEec--CCEEEEEEcCCCCeEEe-eecCC------Cccc-----ccc
Q 019290           23 SKSYQQLQLP-----GVVGPESLAFDCNGEGPYVGVS--DGRILKWKAANSGWTEF-ATTAP------HRAR-----EIC   83 (343)
Q Consensus        23 ~~~~~~~~~~-----~~~~p~~l~~d~~g~~l~~~~~--~g~i~~~d~~~~~~~~~-~~~~~------~~~~-----~~~   83 (343)
                      .+..+++.++     ....|.+++++++|+.+|++..  .+.|..+|..+++...- .....      .+..     ..+
T Consensus        91 ~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~  170 (361)
T 2oiz_A           91 LTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTIC  170 (361)
T ss_dssp             CCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEE
T ss_pred             CcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEEC
Confidence            4455666654     2347999999999998997753  57899999887643321 10000      0000     000


Q ss_pred             -CCC--------CCcc--------cCCCcCCeeeEEEeCCCCeEEEEeCCCeEEEEeCCCCeEEEccc--cc------CC
Q 019290           84 -DGS--------TNTT--------LEPLCGRPLGIKFNPVTCDLYIADAYFGLMVVGPNGGQAQQLAS--SA------GG  138 (343)
Q Consensus        84 -~~~--------~~~~--------~~~~~~~p~gi~~~~~~~~l~v~~~~~gi~~~d~~~~~~~~~~~--~~------~~  138 (343)
                       +|.        .+..        .......|..+...+++..+|+......++.+|..+++......  ..      ..
T Consensus       171 ~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~  250 (361)
T 2oiz_A          171 GDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKN  250 (361)
T ss_dssp             TTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTT
T ss_pred             CCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccc
Confidence             000        0000        00000112222222223345555443447777776543322110  00      00


Q ss_pred             CCccCcceeEEeCCCCeEEEEeC-CcccccccceeeeeecCCCceEEEEeCCCCceEEeecCCCCcceeEEecCCCEEEE
Q 019290          139 IPFRFTNDLDIDPNTGIVYFTDS-SIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLL  217 (343)
Q Consensus       139 ~~~~~~~~i~~d~~dg~l~v~~~-~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv  217 (343)
                      ........++++++.+++|++.. .....        ........|+.+|.++++...-..... +.++++++||+.||+
T Consensus       251 ~~p~g~~~~a~~~dg~~lyv~~~~~~~~~--------~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v  321 (361)
T 2oiz_A          251 WVPGGYNLVGLHRASGRMYVFMHPDGKEG--------THKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLT  321 (361)
T ss_dssp             CEECCSSCEEEETTTTEEEEEEESSCCTT--------CTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEE
T ss_pred             cccCCeeEEEEecCCCeEEEEEccCCCcc--------cccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEE
Confidence            00012234788884478998753 10000        000013579999998887654333334 999999999999998


Q ss_pred             EEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCC
Q 019290          218 AESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGE  259 (343)
Q Consensus       218 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~  259 (343)
                      ++.  +.|.+||..+... .....+......|.+++++++|+
T Consensus       322 ~n~--~~v~v~D~~t~~l-~~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          322 LDG--GNVNVYDISQPEP-KLLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             ECS--SCEEEEECSSSSC-EEEEEETTSCSSEEEEEECCCSC
T ss_pred             eCC--CeEEEEECCCCcc-eeeEEeccCCCCcEEEEecCCCC
Confidence            874  8999999776210 11122222334688999999884

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=98.84  E-value=1.8e-06  Score=76.12  Aligned_cols=212  Identities=11%  Similarity=0.141  Sum_probs=130.1

Q ss_pred             CCCCeeEEEe--cCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCC-----
Q 019290           44 CNGEGPYVGV--SDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAY-----  116 (343)
Q Consensus        44 ~~g~~l~~~~--~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~-----  116 (343)
                      .+|..+|+..  .+++||+.+.++.....+...                      .+..+..+  ++.||++...     
T Consensus        23 ~~g~~iy~~n~~d~~~ly~~~~dg~~~~~l~~~----------------------~~~~i~~~--g~~Iyy~~~~~~~~~   78 (302)
T 3s25_A           23 ESDGEVFFSNTNDNGRLYAMNIDGSNIHKLSND----------------------TAMYINAD--KNYVYYVRNNNQKIT   78 (302)
T ss_dssp             EETTEEEEEEGGGTTEEEEEETTSCSCEEEEEE----------------------EEEEEEEC--SSEEEEEEECC----
T ss_pred             EeCCEEEEEeCCCCceEEEEcCCCCCCEEccCC----------------------ceeeEEEc--CCEEEEEECCCCccc
Confidence            3555466543  368999999988776666421                      13344443  6788877532     


Q ss_pred             ---------CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEe
Q 019290          117 ---------FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYD  187 (343)
Q Consensus       117 ---------~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d  187 (343)
                               ..|+++++++++.+.+...       ..+.++++.  +.||+++..              ......|++++
T Consensus        79 ~~~~~~~n~~~Iy~i~~dg~~~~~l~~~-------~~~~~s~~g--~~Iy~~~~~--------------~~~~~~Iy~~~  135 (302)
T 3s25_A           79 SQTFFSYDRNSLCRIKRNGHGSTVLDPD-------PCIYASLIG--NYIYYLHYD--------------TQTATSLYRIR  135 (302)
T ss_dssp             --CCSSCCSEEEEEEETTSCCCEEEECS-------CEEEEEEET--TEEEEEEES--------------SSSCEEEEEEE
T ss_pred             ccceeccCCCeEEEEeCCCCcceEeecC-------CccEEEEeC--CEEEEEeec--------------CCCCceEEEEE
Confidence                     2499999998776555321       123455654  799998711              01145799999


Q ss_pred             CCCCceEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCC-CCEEEEecc
Q 019290          188 PLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSK-GEFWIAMNS  266 (343)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~-G~lwi~~~~  266 (343)
                      .++...+.+.....    .+++++++.||+++....+|++.++++.    ..+.+..  + +....++|+ |.|+.+.+.
T Consensus       136 ~dGs~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~----~~~~l~~--~-~~~~~~~P~g~~iy~t~~~  204 (302)
T 3s25_A          136 IDGEEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQ----SEALFYD--C-NCYKPVVLDDTNVYYMDVN  204 (302)
T ss_dssp             TTSCCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTT----EEEEEEC--S-CEEEEEEEETTEEEEEEGG
T ss_pred             CCCCCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCC----CEEEEeC--C-CccceeeecCCEEEEEEcC
Confidence            98777766654432    4457889999999887889999998873    3333322  1 223345554 467777665


Q ss_pred             CCCccccccccccccccCCCcccCCCeEEEECCCCCEEEEeeCCCCCccCCceeEEEeCCEEEEe-cCCCCeEEEEc
Q 019290          267 ARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEGNTLNSVSEVQEYGEYLYTG-SSVQPYVVVIK  342 (343)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~-~~~~~~i~~~~  342 (343)
                      .+                       ..|++.+.+|.....+.. ..     ...+.+.+++||.+ ......|.+++
T Consensus       205 ~~-----------------------~~I~~~~ldG~~~~~Lt~-~~-----~~~~~~~g~~Iy~~~~~~~~~i~~~~  252 (302)
T 3s25_A          205 RD-----------------------NAIVHVNINNPNPVVLTE-AN-----IEHYNVYGSLIFYQRGGDNPALCVVK  252 (302)
T ss_dssp             GT-----------------------TEEEEECSSSCCCEECSC-SC-----EEEEEEETTEEEEEECSSSCEEEEEE
T ss_pred             CC-----------------------cEEEEEECCCCCeEEEeC-CC-----cceEEECCCEEEEEECCCCcEEEEEE
Confidence            22                       267888888766555542 11     12244557788876 33445666654

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=98.84  E-value=2.8e-06  Score=77.74  Aligned_cols=153  Identities=11%  Similarity=0.037  Sum_probs=100.0

Q ss_pred             CceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCC
Q 019290           37 PESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAY  116 (343)
Q Consensus        37 p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~  116 (343)
                      ..+++++++|+.++++..++.++.||..+.+....                    ...........+.++++.|.++...
T Consensus        59 ~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~l~~~~~d  118 (420)
T 3vl1_A           59 GKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKM--------------------LKRADYTAVDTAKLQMRRFILGTTE  118 (420)
T ss_dssp             CTTCEEEEEETTEEEEEETTEEEEEECCSEETTTT--------------------SCSCCEEEEEEECSSSCEEEEEETT
T ss_pred             ccceeeeecCCeEEEEEcCCcEEEEEecccceeeE--------------------EecCCceEEEEEecCCCEEEEEECC
Confidence            45899999999888888999999999866321100                    0111112233456634455555433


Q ss_pred             CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCce-EE
Q 019290          117 FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNV-TV  195 (343)
Q Consensus       117 ~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~-~~  195 (343)
                      ..|..+|.++++........    ...+..+++.+ ++.+.++...                 .+.|..||..+++. ..
T Consensus       119 g~i~iwd~~~~~~~~~~~~h----~~~v~~~~~~~-~~~~l~s~s~-----------------d~~i~iwd~~~~~~~~~  176 (420)
T 3vl1_A          119 GDIKVLDSNFNLQREIDQAH----VSEITKLKFFP-SGEALISSSQ-----------------DMQLKIWSVKDGSNPRT  176 (420)
T ss_dssp             SCEEEECTTSCEEEEETTSS----SSCEEEEEECT-TSSEEEEEET-----------------TSEEEEEETTTCCCCEE
T ss_pred             CCEEEEeCCCcceeeecccc----cCccEEEEECC-CCCEEEEEeC-----------------CCeEEEEeCCCCcCceE
Confidence            44999999887765543221    24578999999 5776654432                 46788888876554 33


Q ss_pred             eecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290          196 MYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQG  232 (343)
Q Consensus       196 ~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~  232 (343)
                      +.........++++++++.++.+ ..++.|..|++..
T Consensus       177 ~~~h~~~v~~~~~~~~~~~l~s~-~~d~~v~iwd~~~  212 (420)
T 3vl1_A          177 LIGHRATVTDIAIIDRGRNVLSA-SLDGTIRLWECGT  212 (420)
T ss_dssp             EECCSSCEEEEEEETTTTEEEEE-ETTSCEEEEETTT
T ss_pred             EcCCCCcEEEEEEcCCCCEEEEE-cCCCcEEEeECCC
Confidence            44444567889999999866644 5678899999865

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.83  E-value=5.4e-07  Score=85.50  Aligned_cols=199  Identities=13%  Similarity=0.103  Sum_probs=125.1

Q ss_pred             CCCeeEEE-ecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEE-e-CCCCeEEEEe-------
Q 019290           45 NGEGPYVG-VSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKF-N-PVTCDLYIAD-------  114 (343)
Q Consensus        45 ~g~~l~~~-~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~-~-~~~~~l~v~~-------  114 (343)
                      ||+.+|+. ..+++|-++|..+.+...+..                  .+....|+|+++ . ++.+.+|+++       
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~------------------ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~  161 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVMKCDAILE------------------IPNAKGIHGLRPQKWPRSNYVFCNGEDETPLV  161 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEE------------------CSSCCSEEEEEECCSSBCSEEEEEECSCEESS
T ss_pred             CCCEEEEEcCCCCEEEEEECCCceEeeEEe------------------CCCCCCCcceeeeecCCCcEEEEecccccccC
Confidence            78888865 457799999999876554431                  122335899998 3 6577888884       


Q ss_pred             ----------CCCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCccccc---------------c
Q 019290          115 ----------AYFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQR---------------R  168 (343)
Q Consensus       115 ----------~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~---------------~  168 (343)
                                ...+ +..+|.++.++......  +   ..+..+++++.++.+|++........               .
T Consensus       162 ~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~V--g---g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~  236 (595)
T 1fwx_A          162 NDGTNMEDVANYVNVFTAVDADKWEVAWQVLV--S---GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVF  236 (595)
T ss_dssp             CSSSSTTCGGGEEEEEEEEETTTTEEEEEEEE--S---SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEE
T ss_pred             CCCcccccccccCceEEEEECCCCeEEEEEEe--C---CCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEe
Confidence                      1223 77899998766543222  1   13678899985345777664331110               0


Q ss_pred             cceee---eeecC--CCceEEEEeCCC--Cce-EEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCcc-----c
Q 019290          169 QYFMS---IATGD--RSGRLLKYDPLK--KNV-TVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGER-----T  235 (343)
Q Consensus       169 ~~~~~---~~~~~--~~~~v~~~d~~~--~~~-~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~-----~  235 (343)
                      ++...   +..+.  .-++|..+|..+  ++. .....-...|.++.++|||+++|+++...+.|.+++.....     +
T Consensus       237 ~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~  316 (595)
T 1fwx_A          237 NIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYEN  316 (595)
T ss_dssp             EHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSC
T ss_pred             eccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccc
Confidence            01000   00000  014588899886  433 33344446799999999999999999999999999987421     0


Q ss_pred             c-ccceeeec--CCCCCCceeeCCCCCEEEEecc
Q 019290          236 T-YTPQLFAE--MPRFPDNIKSDSKGEFWIAMNS  266 (343)
Q Consensus       236 ~-~~~~~~~~--~~~~p~~i~~d~~G~lwi~~~~  266 (343)
                      + .+..+...  ....|..+++|++|++|++..-
T Consensus       317 l~~~~~v~~~v~vG~gP~h~aF~~dG~aY~t~~l  350 (595)
T 1fwx_A          317 ADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFL  350 (595)
T ss_dssp             CCGGGGEEECCBCCSCEEEEEECTTSEEEEEETT
T ss_pred             cCcccceEEEcCCCCCcceEEECCCCeEEEEEec
Confidence            0 01112222  2234888999999999998766

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=98.82  E-value=2.1e-06  Score=78.57  Aligned_cols=232  Identities=13%  Similarity=0.091  Sum_probs=135.3

Q ss_pred             eEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCCCe
Q 019290           39 SLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFG  118 (343)
Q Consensus        39 ~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~~g  118 (343)
                      ..++.++|+.+.++..++.|..||..+++.....                   ......+..+++++++..|+.+.....
T Consensus       102 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-------------------~~h~~~v~~~~~~~~~~~l~s~s~d~~  162 (420)
T 3vl1_A          102 VDTAKLQMRRFILGTTEGDIKVLDSNFNLQREID-------------------QAHVSEITKLKFFPSGEALISSSQDMQ  162 (420)
T ss_dssp             EEEECSSSCEEEEEETTSCEEEECTTSCEEEEET-------------------TSSSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             EEEEecCCCEEEEEECCCCEEEEeCCCcceeeec-------------------ccccCccEEEEECCCCCEEEEEeCCCe
Confidence            3467889998888889999999998776543321                   122345678999984445666644345


Q ss_pred             EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEeec
Q 019290          119 LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYN  198 (343)
Q Consensus       119 i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~  198 (343)
                      |..+|.++++........    ...+..+++.+ ++.+.++...                 .+.|..||..+++......
T Consensus       163 i~iwd~~~~~~~~~~~~h----~~~v~~~~~~~-~~~~l~s~~~-----------------d~~v~iwd~~~~~~~~~~~  220 (420)
T 3vl1_A          163 LKIWSVKDGSNPRTLIGH----RATVTDIAIID-RGRNVLSASL-----------------DGTIRLWECGTGTTIHTFN  220 (420)
T ss_dssp             EEEEETTTCCCCEEEECC----SSCEEEEEEET-TTTEEEEEET-----------------TSCEEEEETTTTEEEEEEC
T ss_pred             EEEEeCCCCcCceEEcCC----CCcEEEEEEcC-CCCEEEEEcC-----------------CCcEEEeECCCCceeEEee
Confidence            999999876533222211    23578899999 4776654432                 3557777776665433221


Q ss_pred             C-------------------------CCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeec-CCCCCCce
Q 019290          199 G-------------------------LSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAE-MPRFPDNI  252 (343)
Q Consensus       199 ~-------------------------~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~p~~i  252 (343)
                      .                         ......++++++++.++. ...++.|..|++.....   ...+.. .......+
T Consensus       221 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~i~i~d~~~~~~---~~~~~~~~~~~v~~~  296 (420)
T 3vl1_A          221 RKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIA-GHVSGVITVHNVFSKEQ---TIQLPSKFTCSCNSL  296 (420)
T ss_dssp             BTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEE-EETTSCEEEEETTTCCE---EEEECCTTSSCEEEE
T ss_pred             cCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEE-EcCCCeEEEEECCCCce---eEEcccccCCCceeE
Confidence            1                         122344566788876554 45678999999865221   111111 12224457


Q ss_pred             eeCCCCC-EEEEeccCCCccccccccccccccCCCcccCCCeEEEECCC-CC-EEEEeeCCCCCccCCceeEEEeCCEEE
Q 019290          253 KSDSKGE-FWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVN-GN-VVDVLDGNEGNTLNSVSEVQEYGEYLY  329 (343)
Q Consensus       253 ~~d~~G~-lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~-g~-~~~~~~~~~~~~~~~~~~~~~~~g~l~  329 (343)
                      +++++|. +.++...                        .+.|..+|.+ ++ .+..+....+   ..+..+...+++++
T Consensus       297 ~~~~~~~~~l~~g~~------------------------dg~i~vwd~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~l  349 (420)
T 3vl1_A          297 TVDGNNANYIYAGYE------------------------NGMLAQWDLRSPECPVGEFLINEG---TPINNVYFAAGALF  349 (420)
T ss_dssp             EECSSCTTEEEEEET------------------------TSEEEEEETTCTTSCSEEEEESTT---SCEEEEEEETTEEE
T ss_pred             EEeCCCCCEEEEEeC------------------------CCeEEEEEcCCCcCchhhhhccCC---CCceEEEeCCCCEE
Confidence            7889887 5555444                        3467777763 33 2333332111   23444444466766


Q ss_pred             EecCCCCeEEEEc
Q 019290          330 TGSSVQPYVVVIK  342 (343)
Q Consensus       330 i~~~~~~~i~~~~  342 (343)
                      ++......|.+++
T Consensus       350 ~s~~~d~~v~iw~  362 (420)
T 3vl1_A          350 VSSGFDTSIKLDI  362 (420)
T ss_dssp             EEETTTEEEEEEE
T ss_pred             EEecCCccEEEEe
Confidence            6666666666554

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=98.82  E-value=9.2e-07  Score=80.60  Aligned_cols=199  Identities=9%  Similarity=-0.007  Sum_probs=117.4

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      ...++++.++++.++++..++.|..||..+++................    ..........+..+.+.+ ++.++++..
T Consensus       151 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~~~~~~~  225 (425)
T 1r5m_A          151 PIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSIN----AENHSGDGSLGVDVEWVD-DDKFVIPGP  225 (425)
T ss_dssp             CEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC-------------------CCCBSCCEEEE-TTEEEEECG
T ss_pred             cEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCcccee----eccccCCcceeeEEEEcC-CCEEEEEcC
Confidence            467899999999888888899999999877653322111100000000    000000111156778887 677777754


Q ss_pred             CCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceE-
Q 019290          116 YFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVT-  194 (343)
Q Consensus       116 ~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-  194 (343)
                      ...|..+|.++++........    ...+..+++.+ ++.++++...                 .+.|..||..+++.. 
T Consensus       226 ~g~i~~~d~~~~~~~~~~~~~----~~~i~~~~~~~-~~~~l~~~~~-----------------d~~i~i~d~~~~~~~~  283 (425)
T 1r5m_A          226 KGAIFVYQITEKTPTGKLIGH----HGPISVLEFND-TNKLLLSASD-----------------DGTLRIWHGGNGNSQN  283 (425)
T ss_dssp             GGCEEEEETTCSSCSEEECCC----SSCEEEEEEET-TTTEEEEEET-----------------TSCEEEECSSSBSCSE
T ss_pred             CCeEEEEEcCCCceeeeeccC----CCceEEEEECC-CCCEEEEEcC-----------------CCEEEEEECCCCccce
Confidence            444999999876533221111    13477899999 4765554332                 456888887655543 


Q ss_pred             EeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEecc
Q 019290          195 VMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNS  266 (343)
Q Consensus       195 ~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~~  266 (343)
                      .+.........+++++++  ++++...++.|..|++.....   ...+.........++++++|++.++...
T Consensus       284 ~~~~~~~~i~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~---~~~~~~~~~~i~~~~~s~~~~~l~~~~~  350 (425)
T 1r5m_A          284 CFYGHSQSIVSASWVGDD--KVISCSMDGSVRLWSLKQNTL---LALSIVDGVPIFAGRISQDGQKYAVAFM  350 (425)
T ss_dssp             EECCCSSCEEEEEEETTT--EEEEEETTSEEEEEETTTTEE---EEEEECTTCCEEEEEECTTSSEEEEEET
T ss_pred             EecCCCccEEEEEECCCC--EEEEEeCCCcEEEEECCCCcE---eEecccCCccEEEEEEcCCCCEEEEEEC
Confidence            333334556889999988  445556789999999865221   1122112223456778899987776554

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=98.82  E-value=1.1e-06  Score=79.66  Aligned_cols=200  Identities=10%  Similarity=-0.001  Sum_probs=114.3

Q ss_pred             EEEcCCCCeeEEEec-CC--EEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCC
Q 019290           40 LAFDCNGEGPYVGVS-DG--RILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAY  116 (343)
Q Consensus        40 l~~d~~g~~l~~~~~-~g--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~  116 (343)
                      .+++|||+.+.+... ++  .|+.+|..+++...+...                   ......+..+++++..|+++...
T Consensus        41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~-------------------~~~~~~~~~~spdg~~l~~~~~~  101 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEG-------------------RGDNTFGGFLSPDDDALFYVKDG  101 (388)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCS-------------------SCBCSSSCEECTTSSEEEEEETT
T ss_pred             ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeC-------------------CCCCccceEEcCCCCEEEEEeCC
Confidence            678999996665544 45  599999988766554311                   11111246788856678888655


Q ss_pred             CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcc--ccc-ccce--eeeeecCCCceEEEEeCCCC
Q 019290          117 FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIY--FQR-RQYF--MSIATGDRSGRLLKYDPLKK  191 (343)
Q Consensus       117 ~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~--~~~-~~~~--~~~~~~~~~~~v~~~d~~~~  191 (343)
                      ..++.+|+++++.+.+.......  ........++ ++++.++.....  +.. .++.  ...........|+++|..++
T Consensus       102 ~~l~~~d~~~g~~~~~~~~~~~~--~~~~~~~~~~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g  178 (388)
T 3pe7_A          102 RNLMRVDLATLEENVVYQVPAEW--VGYGTWVANS-DCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTG  178 (388)
T ss_dssp             TEEEEEETTTCCEEEEEECCTTE--EEEEEEEECT-TSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTC
T ss_pred             CeEEEEECCCCcceeeeechhhc--ccccceeECC-CCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCC
Confidence            67999999998776654322110  1011223466 577665321100  000 0000  00011122467999999988


Q ss_pred             ceEEeecCCCCcceeEEec-CCCEEEEEEcC-----CCeEEEEEccCccccccceeeecCC-C-CCCceeeCCCCC-EEE
Q 019290          192 NVTVMYNGLSFPNGVALSN-NNSFLLLAESA-----TLKILRFWLQGERTTYTPQLFAEMP-R-FPDNIKSDSKGE-FWI  262 (343)
Q Consensus       192 ~~~~~~~~~~~~~~i~~~~-d~~~lyv~~~~-----~~~i~~~~~~~~~~~~~~~~~~~~~-~-~p~~i~~d~~G~-lwi  262 (343)
                      +.+.+.........++++| |++.+.++...     ...|+.++.++    ...+.+.... + .....+.++||+ |..
T Consensus       179 ~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~----~~~~~l~~~~~~~~~~~~~~spdg~~l~~  254 (388)
T 3pe7_A          179 ESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDG----TNMRKVKTHAEGESCTHEFWVPDGSALVY  254 (388)
T ss_dssp             CEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTS----CCCEESCCCCTTEEEEEEEECTTSSCEEE
T ss_pred             ceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCC----CceEEeeeCCCCcccccceECCCCCEEEE
Confidence            8877665555567889999 99877665443     34899999776    2333332211 0 112356789986 544


Q ss_pred             Eec
Q 019290          263 AMN  265 (343)
Q Consensus       263 ~~~  265 (343)
                      ...
T Consensus       255 ~~~  257 (388)
T 3pe7_A          255 VSY  257 (388)
T ss_dssp             EEE
T ss_pred             Eec
Confidence            433

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=98.82  E-value=3.5e-06  Score=82.87  Aligned_cols=190  Identities=12%  Similarity=0.079  Sum_probs=114.0

Q ss_pred             CceEEEcCCCCeeEEEe---------------------------------cCCEEEEEEcCCCCeEEeeecCCCcccccc
Q 019290           37 PESLAFDCNGEGPYVGV---------------------------------SDGRILKWKAANSGWTEFATTAPHRAREIC   83 (343)
Q Consensus        37 p~~l~~d~~g~~l~~~~---------------------------------~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~   83 (343)
                      +.+++++|||+.+++..                                 ....|+.+|..+++...+...         
T Consensus       183 ~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~---------  253 (706)
T 2z3z_A          183 EKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTG---------  253 (706)
T ss_dssp             CCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCC---------
T ss_pred             CceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccC---------
Confidence            58999999999766554                                 335788888877654433210         


Q ss_pred             CCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCCC-----eEEEEeCCCC-eEEEcccccCCCCccCcceeEEeC--CCCe
Q 019290           84 DGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYF-----GLMVVGPNGG-QAQQLASSAGGIPFRFTNDLDIDP--NTGI  155 (343)
Q Consensus        84 ~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~~-----gi~~~d~~~~-~~~~~~~~~~~~~~~~~~~i~~d~--~dg~  155 (343)
                              ......+..+++++++..|+++....     .|+.+|.+++ ..+.+...........+..+++.+  + |+
T Consensus       254 --------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~d-g~  324 (706)
T 2z3z_A          254 --------EPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSN-NQ  324 (706)
T ss_dssp             --------SCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCS-SE
T ss_pred             --------CCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCC-CE
Confidence                    01122356788998455577754322     5899999988 555543221111111246678887  5 66


Q ss_pred             EEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEeecCCCCcce-eEEecCCCEEEEEEcCCC----eEEEEEc
Q 019290          156 VYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSFPNG-VALSNNNSFLLLAESATL----KILRFWL  230 (343)
Q Consensus       156 l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~-i~~~~d~~~lyv~~~~~~----~i~~~~~  230 (343)
                      ++++...               .+...||.++..++..+.+..+...... ++++++++.+|++....+    .|++++.
T Consensus       325 ~l~~~~~---------------~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~  389 (706)
T 2z3z_A          325 FIWQSRR---------------DGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDI  389 (706)
T ss_dssp             EEEEECT---------------TSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEET
T ss_pred             EEEEEcc---------------CCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEc
Confidence            5443322               1145799998766666555433333334 789999999998876654    8888887


Q ss_pred             cCccccccceeeecCCCCCCceeeCCCCCEEEEe
Q 019290          231 QGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAM  264 (343)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~  264 (343)
                      ++    +..+.+....+ ...++++++|+.++..
T Consensus       390 ~~----~~~~~l~~~~~-~~~~~~spdg~~l~~~  418 (706)
T 2z3z_A          390 KG----GKTKDLTPESG-MHRTQLSPDGSAIIDI  418 (706)
T ss_dssp             TC----CCCEESCCSSS-EEEEEECTTSSEEEEE
T ss_pred             CC----CCceeccCCCc-eEEEEECCCCCEEEEE
Confidence            65    22233322121 3346778888765543

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=98.81  E-value=3.9e-06  Score=75.25  Aligned_cols=193  Identities=11%  Similarity=0.071  Sum_probs=113.0

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCC--CCeEEEE
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPV--TCDLYIA  113 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~--~~~l~v~  113 (343)
                      ...+++++++|+.+.++..++.|..|+..+.........                 ......+..+++.++  +..|+.+
T Consensus        13 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-----------------~~h~~~v~~~~~~~~~~~~~l~s~   75 (379)
T 3jrp_A           13 LIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTL-----------------TGHEGPVWRVDWAHPKFGTILASC   75 (379)
T ss_dssp             CEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEE-----------------CCCSSCEEEEEECCGGGCSEEEEE
T ss_pred             cEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEe-----------------cCCCCcEEEEEeCCCCCCCEEEEe
Confidence            467899999999888888899999998764333222110                 122234678888763  3455555


Q ss_pred             eCCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCC--CeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCC
Q 019290          114 DAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNT--GIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKK  191 (343)
Q Consensus       114 ~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~d--g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~  191 (343)
                      .....|..+|.++++.........  ....+..+++.+ +  +.+.++...                 .+.|..||..++
T Consensus        76 ~~dg~v~iwd~~~~~~~~~~~~~~--~~~~v~~~~~~~-~~~~~~l~~~~~-----------------d~~i~v~d~~~~  135 (379)
T 3jrp_A           76 SYDGKVLIWKEENGRWSQIAVHAV--HSASVNSVQWAP-HEYGPLLLVASS-----------------DGKVSVVEFKEN  135 (379)
T ss_dssp             ETTSCEEEEEEETTEEEEEEEECC--CSSCEEEEEECC-GGGCSEEEEEET-----------------TSEEEEEECCTT
T ss_pred             ccCCEEEEEEcCCCceeEeeeecC--CCcceEEEEeCC-CCCCCEEEEecC-----------------CCcEEEEecCCC
Confidence            433348899988876433322211  123578889988 4  555443322                 456778887655


Q ss_pred             c---eEEeecCCCCcceeEEec-------------CCCEEEEEEcCCCeEEEEEccCccccccc-eeeecCCCCCCceee
Q 019290          192 N---VTVMYNGLSFPNGVALSN-------------NNSFLLLAESATLKILRFWLQGERTTYTP-QLFAEMPRFPDNIKS  254 (343)
Q Consensus       192 ~---~~~~~~~~~~~~~i~~~~-------------d~~~lyv~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~p~~i~~  254 (343)
                      .   ...+.........+++++             ++..++ +...++.|..|++......... ..+.........+++
T Consensus       136 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~  214 (379)
T 3jrp_A          136 GTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFV-TGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAW  214 (379)
T ss_dssp             SCCCEEEEECCTTCEEEEEECCCC----------CTTCEEE-EEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEE
T ss_pred             CceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEE-EEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEE
Confidence            2   222333445567888888             566554 4456789999998753210111 111111222345778


Q ss_pred             CCC---CCEEEEecc
Q 019290          255 DSK---GEFWIAMNS  266 (343)
Q Consensus       255 d~~---G~lwi~~~~  266 (343)
                      +++   |++.++...
T Consensus       215 sp~~~~~~~l~s~~~  229 (379)
T 3jrp_A          215 SPTVLLRSYLASVSQ  229 (379)
T ss_dssp             CCCCSSSEEEEEEET
T ss_pred             CCCCCCCCeEEEEeC
Confidence            888   766666554

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=98.81  E-value=6.2e-06  Score=82.21  Aligned_cols=186  Identities=11%  Similarity=0.049  Sum_probs=117.3

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      ...+++++|+|..+.++..+|.|..||..++.......                   .....+..+++++++..|.++..
T Consensus        15 ~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~-------------------~~~~~v~~~~~s~~~~~l~~~~~   75 (814)
T 3mkq_A           15 RVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQ-------------------VTETPVRAGKFIARKNWIIVGSD   75 (814)
T ss_dssp             CEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE-------------------CCSSCEEEEEEEGGGTEEEEEET
T ss_pred             ceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEe-------------------cCCCcEEEEEEeCCCCEEEEEeC
Confidence            57899999999988888889999999987754332211                   12234678999995556777754


Q ss_pred             CCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCC-ceE
Q 019290          116 YFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKK-NVT  194 (343)
Q Consensus       116 ~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~-~~~  194 (343)
                      ...|..+|.++++........    ...+..+++.+ ++...++...                 .+.|..||..++ ...
T Consensus        76 dg~i~vw~~~~~~~~~~~~~~----~~~v~~~~~s~-~~~~l~~~~~-----------------dg~i~vw~~~~~~~~~  133 (814)
T 3mkq_A           76 DFRIRVFNYNTGEKVVDFEAH----PDYIRSIAVHP-TKPYVLSGSD-----------------DLTVKLWNWENNWALE  133 (814)
T ss_dssp             TSEEEEEETTTCCEEEEEECC----SSCEEEEEECS-SSSEEEEEET-----------------TSEEEEEEGGGTSEEE
T ss_pred             CCeEEEEECCCCcEEEEEecC----CCCEEEEEEeC-CCCEEEEEcC-----------------CCEEEEEECCCCceEE
Confidence            445999999887654332221    13478899999 4765443322                 456777887654 332


Q ss_pred             -EeecCCCCcceeEEec-CCCEEEEEEcCCCeEEEEEccCccccccceeeec-CCCCCCceeeCC--CCCEEEEecc
Q 019290          195 -VMYNGLSFPNGVALSN-NNSFLLLAESATLKILRFWLQGERTTYTPQLFAE-MPRFPDNIKSDS--KGEFWIAMNS  266 (343)
Q Consensus       195 -~~~~~~~~~~~i~~~~-d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~--~G~lwi~~~~  266 (343)
                       .+.........++++| ++. ++++...++.|..|++.....   ...+.. .......++..+  +|.+.++...
T Consensus       134 ~~~~~~~~~v~~~~~~p~~~~-~l~~~~~dg~v~vwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~  206 (814)
T 3mkq_A          134 QTFEGHEHFVMCVAFNPKDPS-TFASGCLDRTVKVWSLGQSTP---NFTLTTGQERGVNYVDYYPLPDKPYMITASD  206 (814)
T ss_dssp             EEEECCSSCEEEEEEETTEEE-EEEEEETTSEEEEEETTCSSC---SEEEECCCTTCCCEEEECCSTTCCEEEEECT
T ss_pred             EEEcCCCCcEEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcc---eeEEecCCCCCEEEEEEEECCCCCEEEEEeC
Confidence             2333344568889998 555 445556688999999865321   112211 112244566666  7876666554

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=98.81  E-value=4.8e-07  Score=81.69  Aligned_cols=189  Identities=8%  Similarity=0.015  Sum_probs=117.8

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      ...++++.++|+.+.++..++.|..||.++++.....                   ......+..+++.+.++.++++..
T Consensus       141 ~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~-------------------~~h~~~v~~v~~s~~~~~~~~s~~  201 (357)
T 4g56_B          141 IVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSY-------------------NAHSSEVNCVAACPGKDTIFLSCG  201 (357)
T ss_dssp             CEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEE-------------------CCCSSCEEEEEECTTCSSCEEEEE
T ss_pred             CEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEE-------------------cCCCCCEEEEEEccCCCceeeeec
Confidence            3568999999998888889999999999876543221                   112234678888874444554434


Q ss_pred             CCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceE
Q 019290          116 YFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVT  194 (343)
Q Consensus       116 ~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~  194 (343)
                      .+| |..+|.++++........  .....+..+++.|.++.++++...                 .+.|..||..+++..
T Consensus       202 ~dg~v~~wd~~~~~~~~~~~~~--~~~~~v~~v~~sp~~~~~la~g~~-----------------d~~i~~wd~~~~~~~  262 (357)
T 4g56_B          202 EDGRILLWDTRKPKPATRIDFC--ASDTIPTSVTWHPEKDDTFACGDE-----------------TGNVSLVNIKNPDSA  262 (357)
T ss_dssp             TTSCEEECCTTSSSCBCBCCCT--TCCSCEEEEEECTTSTTEEEEEES-----------------SSCEEEEESSCGGGC
T ss_pred             cCCceEEEECCCCceeeeeeec--cccccccchhhhhcccceEEEeec-----------------ccceeEEECCCCcEe
Confidence            444 888998876543222111  112346788888843455543222                 456888888766543


Q ss_pred             -EeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCC-CCCEEEEecc
Q 019290          195 -VMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDS-KGEFWIAMNS  266 (343)
Q Consensus       195 -~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~-~G~lwi~~~~  266 (343)
                       .+.........++++++++.+.++...++.|..|++...    +......-.+....+++.| +|+++++...
T Consensus       263 ~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~----~~~~~~~H~~~V~~vafsP~d~~~l~s~s~  332 (357)
T 4g56_B          263 QTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFS----EVFRDLSHRDFVTGVAWSPLDHSKFTTVGW  332 (357)
T ss_dssp             EEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSC----EEEEECCCSSCEEEEEECSSSTTEEEEEET
T ss_pred             EEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCC----cEeEECCCCCCEEEEEEeCCCCCEEEEEcC
Confidence             333333456889999988766666667889999997652    2111111122244577886 7877776544

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=98.81  E-value=5.2e-06  Score=76.28  Aligned_cols=234  Identities=12%  Similarity=0.078  Sum_probs=141.6

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      ...+++++++|+.+.++..++.|..||..+.+.....                   ......+..+.++++++.|..+..
T Consensus       152 ~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~-------------------~~h~~~V~~v~~~p~~~~l~s~s~  212 (410)
T 1vyh_C          152 SVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTM-------------------HGHDHNVSSVSIMPNGDHIVSASR  212 (410)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECC-------------------CCCSSCEEEEEECSSSSEEEEEET
T ss_pred             cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEE-------------------cCCCCCEEEEEEeCCCCEEEEEeC
Confidence            4678999999998888899999999998775432211                   122234678999984445555544


Q ss_pred             CCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEE
Q 019290          116 YFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTV  195 (343)
Q Consensus       116 ~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~  195 (343)
                      ...|..+|.++++........    ...+..+.+.+ ++.++++...                 .+.|..||..+++...
T Consensus       213 D~~i~~wd~~~~~~~~~~~~h----~~~v~~~~~~~-~g~~l~s~s~-----------------D~~v~vwd~~~~~~~~  270 (410)
T 1vyh_C          213 DKTIKMWEVQTGYCVKTFTGH----REWVRMVRPNQ-DGTLIASCSN-----------------DQTVRVWVVATKECKA  270 (410)
T ss_dssp             TSEEEEEETTTCCEEEEEECC----SSCEEEEEECT-TSSEEEEEET-----------------TSCEEEEETTTCCEEE
T ss_pred             CCeEEEEECCCCcEEEEEeCC----CccEEEEEECC-CCCEEEEEcC-----------------CCeEEEEECCCCceee
Confidence            344899999887643322211    13467788888 5887765433                 4567778877665443


Q ss_pred             -eecCCCCcceeEEecC--------------------CCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceee
Q 019290          196 -MYNGLSFPNGVALSNN--------------------NSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKS  254 (343)
Q Consensus       196 -~~~~~~~~~~i~~~~d--------------------~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~  254 (343)
                       +.........++++|+                    +. +.++...++.|..|++.....   ...+....+....+++
T Consensus       271 ~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~l~sgs~D~~i~iwd~~~~~~---~~~~~~h~~~v~~v~~  346 (410)
T 1vyh_C          271 ELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGP-FLLSGSRDKTIKMWDVSTGMC---LMTLVGHDNWVRGVLF  346 (410)
T ss_dssp             EECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CC-EEEEEETTSEEEEEETTTTEE---EEEEECCSSCEEEEEE
T ss_pred             EecCCCceEEEEEEcCcccccchhhhccccccccCCCCC-EEEEEeCCCeEEEEECCCCce---EEEEECCCCcEEEEEE
Confidence             2233344567777765                    33 455666789999999865211   1222212222446788


Q ss_pred             CCCCCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECC-CCCEEEEeeCCCCCccCCceeEEEe-CCEEEEec
Q 019290          255 DSKGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDV-NGNVVDVLDGNEGNTLNSVSEVQEY-GEYLYTGS  332 (343)
Q Consensus       255 d~~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~  332 (343)
                      +++|++.++...                        .+.|..+|. .++....+....    ..+..+... ++.+.++.
T Consensus       347 ~~~g~~l~s~s~------------------------D~~i~vwd~~~~~~~~~~~~h~----~~v~~l~~~~~~~~l~sg  398 (410)
T 1vyh_C          347 HSGGKFILSCAD------------------------DKTLRVWDYKNKRCMKTLNAHE----HFVTSLDFHKTAPYVVTG  398 (410)
T ss_dssp             CSSSSCEEEEET------------------------TTEEEEECCTTSCCCEEEECCS----SCEEEEEECSSSSCEEEE
T ss_pred             cCCCCEEEEEeC------------------------CCeEEEEECCCCceEEEEcCCC----CcEEEEEEcCCCCEEEEE
Confidence            999976666554                        346777776 355444443222    235555443 45555555


Q ss_pred             CCCCeEEEEc
Q 019290          333 SVQPYVVVIK  342 (343)
Q Consensus       333 ~~~~~i~~~~  342 (343)
                      .....|.+++
T Consensus       399 s~D~~i~vW~  408 (410)
T 1vyh_C          399 SVDQTVKVWE  408 (410)
T ss_dssp             ETTSEEEEEC
T ss_pred             eCCCcEEEEe
Confidence            5555665554

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=98.81  E-value=4.3e-06  Score=80.27  Aligned_cols=242  Identities=12%  Similarity=0.065  Sum_probs=139.8

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCC----Ce-EEeeecCCCccccccCCCCCcccCCCcCC-eeeEEEeC--CC
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANS----GW-TEFATTAPHRAREICDGSTNTTLEPLCGR-PLGIKFNP--VT  107 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~gi~~~~--~~  107 (343)
                      .+.+++++++|+.+.++. ++.|..|+..++    +. ..+.                    ..... +..+++++  ++
T Consensus        20 ~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~--------------------~h~~~~v~~~~~sp~~~~   78 (615)
T 1pgu_A           20 FTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFT--------------------GHGSSVVTTVKFSPIKGS   78 (615)
T ss_dssp             CCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEEC--------------------TTTTSCEEEEEECSSTTC
T ss_pred             ceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEe--------------------cCCCceEEEEEECcCCCC
Confidence            588999999999666655 788999998765    32 2221                    22334 67899998  67


Q ss_pred             CeEEEEeCCCeEEEEeCCCC------eEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCc
Q 019290          108 CDLYIADAYFGLMVVGPNGG------QAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSG  181 (343)
Q Consensus       108 ~~l~v~~~~~gi~~~d~~~~------~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~  181 (343)
                      ..|..+.....|..+|.+++      +.+...... . ....+..+++.+ +++..++....             ....+
T Consensus        79 ~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~-~-~~~~v~~~~~s~-~~~~l~~~~~~-------------~~~~~  142 (615)
T 1pgu_A           79 QYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQ-V-LAGPISDISWDF-EGRRLCVVGEG-------------RDNFG  142 (615)
T ss_dssp             CEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEE-C-CSSCEEEEEECT-TSSEEEEEECC-------------SSCSE
T ss_pred             CEEEEecCCCEEEEEeCCCCcccccccccccchhh-c-ccccEEEEEEeC-CCCEEEEeccC-------------CCCcc
Confidence            77777754445888888644      222221111 1 123578899999 47655543220             01125


Q ss_pred             eEEEEeCCCCceEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCC---CCCceeeCCC-
Q 019290          182 RLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPR---FPDNIKSDSK-  257 (343)
Q Consensus       182 ~v~~~d~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~p~~i~~d~~-  257 (343)
                      .|+.+|. ......+.........++++++++.++++...++.|..|++.....   ...+.....   ....++++++ 
T Consensus       143 ~v~~~d~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~  218 (615)
T 1pgu_A          143 VFISWDS-GNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKF---SASDRTHHKQGSFVRDVEFSPDS  218 (615)
T ss_dssp             EEEETTT-CCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEE---EEEECSSSCTTCCEEEEEECSTT
T ss_pred             EEEEEEC-CCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcce---eeeecccCCCCceEEEEEECCCC
Confidence            6888873 2334444444456788999999885566666789999999764211   112211111   2345778898 


Q ss_pred             CCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECC-CCCEEEEeeCCCCCccCCceeEEEeCCEEEEecCCCC
Q 019290          258 GEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDV-NGNVVDVLDGNEGNTLNSVSEVQEYGEYLYTGSSVQP  336 (343)
Q Consensus       258 G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~~~  336 (343)
                      |++.++...                        .+.|..+|. +++....+..+.......+..+...+++++++.....
T Consensus       219 ~~~l~~~~~------------------------dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~  274 (615)
T 1pgu_A          219 GEFVITVGS------------------------DRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADA  274 (615)
T ss_dssp             CCEEEEEET------------------------TCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTS
T ss_pred             CCEEEEEeC------------------------CCeEEEEECCCCCEeEEecccccccCCceEEEEEcCCCEEEEEcCCC
Confidence            887666544                        246777775 5666666521000012233333332444444444445


Q ss_pred             eEEEEc
Q 019290          337 YVVVIK  342 (343)
Q Consensus       337 ~i~~~~  342 (343)
                      .|.+++
T Consensus       275 ~i~~wd  280 (615)
T 1pgu_A          275 TIRVWD  280 (615)
T ss_dssp             EEEEEE
T ss_pred             cEEEEE
Confidence            565554

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=98.80  E-value=1.3e-07  Score=88.39  Aligned_cols=169  Identities=12%  Similarity=0.206  Sum_probs=101.8

Q ss_pred             cCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEee---c------CCCCcceeEEecC-
Q 019290          142 RFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMY---N------GLSFPNGVALSNN-  211 (343)
Q Consensus       142 ~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~---~------~~~~~~~i~~~~d-  211 (343)
                      ..+.+|++++ +|+|||++..                 .++|++++..+++...+.   .      +...+.+++++|+ 
T Consensus        27 ~~P~~~a~~p-dG~l~V~e~~-----------------gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf   88 (454)
T 1cru_A           27 NKPHALLWGP-DNQIWLTERA-----------------TGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDF   88 (454)
T ss_dssp             SSEEEEEECT-TSCEEEEETT-----------------TCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTT
T ss_pred             CCceEEEEcC-CCcEEEEEcC-----------------CCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCc
Confidence            4678999999 6999998864                 346999987656554332   1      1233459999997 


Q ss_pred             --CCEEEEEEcC------------CCeEEEEEccCc-cccccceeeec-CC----CCCCceeeCCCCCEEEEeccCCCcc
Q 019290          212 --NSFLLLAESA------------TLKILRFWLQGE-RTTYTPQLFAE-MP----RFPDNIKSDSKGEFWIAMNSARGKI  271 (343)
Q Consensus       212 --~~~lyv~~~~------------~~~i~~~~~~~~-~~~~~~~~~~~-~~----~~p~~i~~d~~G~lwi~~~~~~~~~  271 (343)
                        ++.||++.+.            ..+|++++++.. ..+...+.+.. .+    ..+.+|++++||+||++....+...
T Consensus        89 ~~~g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd~~~~~  168 (454)
T 1cru_A           89 KNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQGRNQ  168 (454)
T ss_dssp             TTSCEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCTTTTS
T ss_pred             CcCCEEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECCCCCCC
Confidence              7789998763            358999987642 11122233322 21    2356799999999999976522210


Q ss_pred             cccccccc-ccc--cCCC-------c--ccCCCeEEEECCCCC-----------EEEEeeCCCCCccCCceeEEEe-CCE
Q 019290          272 ESNKKTAF-CEE--TAKP-------W--FLRDPVGVKFDVNGN-----------VVDVLDGNEGNTLNSVSEVQEY-GEY  327 (343)
Q Consensus       272 ~~~~~~~~-~~~--~~~~-------~--~~~~~~v~~~d~~g~-----------~~~~~~~~~~~~~~~~~~~~~~-~g~  327 (343)
                      .    .+. ...  ...|       .  ....+.|+|++++|+           ..++++.  +  ...+..+..+ .|+
T Consensus       169 ~----~~~~~~~~~~~~p~~~~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~--G--~RNp~gla~dp~G~  240 (454)
T 1cru_A          169 L----AYLFLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTL--G--HRNPQGLAFTPNGK  240 (454)
T ss_dssp             G----GGTTSCCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEB--C--CSEEEEEEECTTSC
T ss_pred             c----cccccccccccccccccccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEE--C--CCCcceEEECCCCC
Confidence            0    000 000  0000       0  012578999999987           2333432  1  2234444444 789


Q ss_pred             EEEecCCCC
Q 019290          328 LYTGSSVQP  336 (343)
Q Consensus       328 l~i~~~~~~  336 (343)
                      ||++....+
T Consensus       241 L~~~d~g~~  249 (454)
T 1cru_A          241 LLQSEQGPN  249 (454)
T ss_dssp             EEEEEECSS
T ss_pred             EEEEecCCC
Confidence            999987654

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=98.80  E-value=2.2e-06  Score=79.27  Aligned_cols=202  Identities=9%  Similarity=0.045  Sum_probs=115.9

Q ss_pred             CCceEEEcCC-CCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEe
Q 019290           36 GPESLAFDCN-GEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIAD  114 (343)
Q Consensus        36 ~p~~l~~d~~-g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~  114 (343)
                      .+.++++.++ +++++++..+|.|..|+..+.....-. ...        .............+.++++++.+..++++.
T Consensus       130 ~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~-~~~--------~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~  200 (430)
T 2xyi_A          130 EVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEP-SGE--------CQPDLRLRGHQKEGYGLSWNPNLNGYLLSA  200 (430)
T ss_dssp             CCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCT-TCC--------CCCSEEEECCSSCCCCEEECTTSTTEEEEE
T ss_pred             cEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCc-ccc--------CCCcEEecCCCCCeEEEEeCCCCCCeEEEE
Confidence            6889999997 666778888999999987541000000 000        000000011223467899998444244443


Q ss_pred             CCCe-EEEEeCCCCeE----EEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCC
Q 019290          115 AYFG-LMVVGPNGGQA----QQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPL  189 (343)
Q Consensus       115 ~~~g-i~~~d~~~~~~----~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~  189 (343)
                      ...| |..++..++..    ......... ....++++++.+.++.++++...                 .+.|..||..
T Consensus       201 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-h~~~v~~v~~~p~~~~~l~s~~~-----------------dg~i~i~d~~  262 (430)
T 2xyi_A          201 SDDHTICLWDINATPKEHRVIDAKNIFTG-HTAVVEDVAWHLLHESLFGSVAD-----------------DQKLMIWDTR  262 (430)
T ss_dssp             CTTSCEEEEETTSCCBGGGEEECSEEECC-CSSCEEEEEECSSCTTEEEEEET-----------------TSEEEEEETT
T ss_pred             eCCCeEEEEeCCCCCCCCceeccceeecC-CCCCEeeeEEeCCCCCEEEEEeC-----------------CCeEEEEECC
Confidence            4455 88999876321    100011111 12457889998843566665433                 5678888887


Q ss_pred             CCc----eEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCC-EEEEe
Q 019290          190 KKN----VTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGE-FWIAM  264 (343)
Q Consensus       190 ~~~----~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-lwi~~  264 (343)
                      ++.    ...+......++.++++++++.++++....+.|..|++.....  ....+....+....+++.++|. ++++.
T Consensus       263 ~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~--~~~~~~~h~~~v~~i~~sp~~~~~l~s~  340 (430)
T 2xyi_A          263 NNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL--KLHSFESHKDEIFQVQWSPHNETILASS  340 (430)
T ss_dssp             CSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS--CSEEEECCSSCEEEEEECSSCTTEEEEE
T ss_pred             CCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC--CeEEeecCCCCEEEEEECCCCCCEEEEE
Confidence            542    2233344456789999999987787777889999999864221  1222222222244577888884 55555


Q ss_pred             cc
Q 019290          265 NS  266 (343)
Q Consensus       265 ~~  266 (343)
                      ..
T Consensus       341 ~~  342 (430)
T 2xyi_A          341 GT  342 (430)
T ss_dssp             ET
T ss_pred             eC
Confidence            44

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=98.78  E-value=7.7e-06  Score=73.82  Aligned_cols=203  Identities=13%  Similarity=0.093  Sum_probs=126.2

Q ss_pred             CCCCCceEEEcCCCCeeEEEec---------------CCEEEEEEcCCC--C-eEEeeecCCCccccccCCCCCcccCCC
Q 019290           33 GVVGPESLAFDCNGEGPYVGVS---------------DGRILKWKAANS--G-WTEFATTAPHRAREICDGSTNTTLEPL   94 (343)
Q Consensus        33 ~~~~p~~l~~d~~g~~l~~~~~---------------~g~i~~~d~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (343)
                      ++.++.++.+|+.|++|+.++.               ..+|+.||..+.  + +..|......              ...
T Consensus        85 ~lvsV~~v~iD~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~--------------~~~  150 (381)
T 3q6k_A           85 ELTSIYQPVIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRL--------------VEK  150 (381)
T ss_dssp             SSSCEEEEEECTTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGG--------------CCC
T ss_pred             ceEEeeEEEEcCCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHh--------------ccc
Confidence            5678999999999984435432               126999999886  4 3344321111              111


Q ss_pred             cCCeeeEEEe-CC------CCeEEEEeCC-CeEEEEeCCCCeEEEcccc---cC--------CCC---ccCcceeEEeCC
Q 019290           95 CGRPLGIKFN-PV------TCDLYIADAY-FGLMVVGPNGGQAQQLASS---AG--------GIP---FRFTNDLDIDPN  152 (343)
Q Consensus        95 ~~~p~gi~~~-~~------~~~l~v~~~~-~gi~~~d~~~~~~~~~~~~---~~--------~~~---~~~~~~i~~d~~  152 (343)
                      ....+.+.++ .+      ++.+||+|.. .||.++|.++++..++...   .+        +.+   ...+.+|++++.
T Consensus       151 ~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~  230 (381)
T 3q6k_A          151 PTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDR  230 (381)
T ss_dssp             GGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCC
T ss_pred             CCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCC
Confidence            2345678888 21      4579999964 5799999998876555321   11        111   135778888873


Q ss_pred             ----CCeEEEEeCCcccccccceeeeeecCCCceEEEEeC------C-CCceEEeecCC--CCcceeEEecCCCEEEEEE
Q 019290          153 ----TGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDP------L-KKNVTVMYNGL--SFPNGVALSNNNSFLLLAE  219 (343)
Q Consensus       153 ----dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~------~-~~~~~~~~~~~--~~~~~i~~~~d~~~lyv~~  219 (343)
                          +..||+.-.+                 +..+|++..      . ...++.+-...  ....++++++..+.||++.
T Consensus       231 ~~~~~~~LYf~pls-----------------s~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~  293 (381)
T 3q6k_A          231 DSEGNRPAYYLAGS-----------------AIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAE  293 (381)
T ss_dssp             CTTSCCEEEEEESS-----------------CSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEE
T ss_pred             cCCCCeEEEEEECC-----------------CCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEe
Confidence                2468886654                 335666641      1 12333332222  1223566764455799999


Q ss_pred             cCCCeEEEEEccC-ccccccceeeecCC--CCCCceeeCCCCCEEEEecc
Q 019290          220 SATLKILRFWLQG-ERTTYTPQLFAEMP--RFPDNIKSDSKGEFWIAMNS  266 (343)
Q Consensus       220 ~~~~~i~~~~~~~-~~~~~~~~~~~~~~--~~p~~i~~d~~G~lwi~~~~  266 (343)
                      ...+.|.+|+.++ +-...+..++...+  .+|+++.+|.+|.||+.++.
T Consensus       294 ~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~sn~  343 (381)
T 3q6k_A          294 ANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMSNG  343 (381)
T ss_dssp             SSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEECS
T ss_pred             ccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEECc
Confidence            9999999999876 32213445555432  36899999999999999875

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=98.78  E-value=4.1e-06  Score=75.04  Aligned_cols=191  Identities=8%  Similarity=0.006  Sum_probs=114.9

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      ...++++.++|+.++++..++.|..||..+++.......                 ......+..+.+++++..|+++..
T Consensus        54 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-----------------~~~~~~v~~~~~~~~~~~l~~~~~  116 (372)
T 1k8k_C           54 QVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVI-----------------LRINRAARCVRWAPNEKKFAVGSG  116 (372)
T ss_dssp             CEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEEC-----------------CCCSSCEEEEEECTTSSEEEEEET
T ss_pred             cccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEe-----------------ecCCCceeEEEECCCCCEEEEEeC
Confidence            467999999999888888899999999877653322110                 112234678999985556666654


Q ss_pred             CCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCC------
Q 019290          116 YFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPL------  189 (343)
Q Consensus       116 ~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~------  189 (343)
                      ...+..+|.++++...............+..+++.+ ++.++++...                 .+.|..||..      
T Consensus       117 d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~-----------------dg~i~~~d~~~~~~~~  178 (372)
T 1k8k_C          117 SRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHP-NSVLLAAGSC-----------------DFKCRIFSAYIKEVEE  178 (372)
T ss_dssp             TSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECT-TSSEEEEEET-----------------TSCEEEEECCCTTTSC
T ss_pred             CCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcC-CCCEEEEEcC-----------------CCCEEEEEcccccccc
Confidence            344777777655411110111111124578899999 4766654332                 4567777732      


Q ss_pred             ------------CCceE-EeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCC
Q 019290          190 ------------KKNVT-VMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDS  256 (343)
Q Consensus       190 ------------~~~~~-~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~  256 (343)
                                  .++.. .+.........+++++++..++.+ ..++.|..|++.....   ...+.........+++++
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~---~~~~~~~~~~v~~~~~~~  254 (372)
T 1k8k_C          179 RPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWV-SHDSTVCLADADKKMA---VATLASETLPLLAVTFIT  254 (372)
T ss_dssp             CCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEE-ETTTEEEEEEGGGTTE---EEEEECSSCCEEEEEEEE
T ss_pred             cccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEE-eCCCEEEEEECCCCce---eEEEccCCCCeEEEEEec
Confidence                        23332 232333457889999999866655 4678999999864221   122221222234577888


Q ss_pred             CCCEEEEec
Q 019290          257 KGEFWIAMN  265 (343)
Q Consensus       257 ~G~lwi~~~  265 (343)
                      +|++.++..
T Consensus       255 ~~~~l~~~~  263 (372)
T 1k8k_C          255 ESSLVAAGH  263 (372)
T ss_dssp             TTEEEEEET
T ss_pred             CCCEEEEEe
Confidence            888777663

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=98.77  E-value=5.9e-06  Score=73.97  Aligned_cols=192  Identities=13%  Similarity=0.038  Sum_probs=113.4

Q ss_pred             CceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCC
Q 019290           37 PESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAY  116 (343)
Q Consensus        37 p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~  116 (343)
                      ...+++.++|+.+.++..++.|..||..++........                .......+..+++++++..|..+...
T Consensus        19 v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~----------------~~~h~~~v~~~~~sp~g~~l~s~s~D   82 (345)
T 3fm0_A           19 CWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVL----------------SEGHQRTVRKVAWSPCGNYLASASFD   82 (345)
T ss_dssp             EEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEE----------------CSSCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeee----------------ccccCCcEEEEEECCCCCEEEEEECC
Confidence            46899999999888888999999998876543211100                01122346789999844455555433


Q ss_pred             CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCce---
Q 019290          117 FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNV---  193 (343)
Q Consensus       117 ~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~---  193 (343)
                      ..+..++.+++..+.+... .+ ....+..+++.+ ++++.++...                 .+.|..+|..++..   
T Consensus        83 ~~v~iw~~~~~~~~~~~~~-~~-h~~~v~~v~~sp-~~~~l~s~s~-----------------D~~v~iwd~~~~~~~~~  142 (345)
T 3fm0_A           83 ATTCIWKKNQDDFECVTTL-EG-HENEVKSVAWAP-SGNLLATCSR-----------------DKSVWVWEVDEEDEYEC  142 (345)
T ss_dssp             SCEEEEEECCC-EEEEEEE-CC-CSSCEEEEEECT-TSSEEEEEET-----------------TSCEEEEEECTTSCEEE
T ss_pred             CcEEEEEccCCCeEEEEEc-cC-CCCCceEEEEeC-CCCEEEEEEC-----------------CCeEEEEECCCCCCeEE
Confidence            4477788776654332211 11 124578899999 5877765433                 34566666544321   


Q ss_pred             -EEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEecc
Q 019290          194 -TVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNS  266 (343)
Q Consensus       194 -~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~~  266 (343)
                       ..+.........++++|+++.+.. ...++.|..|+...... .....+.........++++++|++.++...
T Consensus       143 ~~~~~~h~~~v~~~~~~p~~~~l~s-~s~d~~i~~w~~~~~~~-~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~  214 (345)
T 3fm0_A          143 VSVLNSHTQDVKHVVWHPSQELLAS-ASYDDTVKLYREEEDDW-VCCATLEGHESTVWSLAFDPSGQRLASCSD  214 (345)
T ss_dssp             EEEECCCCSCEEEEEECSSSSCEEE-EETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             EEEecCcCCCeEEEEECCCCCEEEE-EeCCCcEEEEEecCCCE-EEEEEecCCCCceEEEEECCCCCEEEEEeC
Confidence             122233345678899999886554 45678899998765211 111111111222345778899887766554

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.76  E-value=1.6e-05  Score=71.89  Aligned_cols=178  Identities=12%  Similarity=0.050  Sum_probs=103.3

Q ss_pred             CCeEEEEeCCCeEEEEeCCCCeEEEcccccCCCC------cc-CcceeEEeCCCCeEEEEeCCcccccccceeeeeecCC
Q 019290          107 TCDLYIADAYFGLMVVGPNGGQAQQLASSAGGIP------FR-FTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDR  179 (343)
Q Consensus       107 ~~~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~------~~-~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~  179 (343)
                      ++.+|++....+++.+|+++|+............      .. .....+++  ++.+|++..                  
T Consensus       188 ~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~v~~~~~------------------  247 (376)
T 3q7m_A          188 FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVV--NGVVFALAY------------------  247 (376)
T ss_dssp             TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEE--TTEEEEECT------------------
T ss_pred             CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEE--CCEEEEEec------------------
Confidence            5789998544569999999888765432211000      00 11122333  378998653                  


Q ss_pred             CceEEEEeCCCCceEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeec-CC-CCCCceeeCCC
Q 019290          180 SGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAE-MP-RFPDNIKSDSK  257 (343)
Q Consensus       180 ~~~v~~~d~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~-~~p~~i~~d~~  257 (343)
                      .+.++.+|..+++..... .......+.+  +++.+|+... .+.|+.++..+    ++..-... .. ......++. +
T Consensus       248 ~g~l~~~d~~tG~~~w~~-~~~~~~~~~~--~~~~l~~~~~-~g~l~~~d~~t----G~~~w~~~~~~~~~~~~~~~~-~  318 (376)
T 3q7m_A          248 NGNLTALDLRSGQIMWKR-ELGSVNDFIV--DGNRIYLVDQ-NDRVMALTIDG----GVTLWTQSDLLHRLLTSPVLY-N  318 (376)
T ss_dssp             TSCEEEEETTTCCEEEEE-CCCCEEEEEE--ETTEEEEEET-TCCEEEEETTT----CCEEEEECTTTTSCCCCCEEE-T
T ss_pred             CcEEEEEECCCCcEEeec-cCCCCCCceE--ECCEEEEEcC-CCeEEEEECCC----CcEEEeecccCCCcccCCEEE-C
Confidence            457999999888764322 2223344444  3567888764 67899999765    22211111 11 112223332 5


Q ss_pred             CCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECC-CCCEEEEeeCCCCCccCCceeEEEeCCEEEEecCCCC
Q 019290          258 GEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDV-NGNVVDVLDGNEGNTLNSVSEVQEYGEYLYTGSSVQP  336 (343)
Q Consensus       258 G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~~~  336 (343)
                      |.||+++..                         +.|+++|+ +|+.+.....+...   ........+++||+++.. .
T Consensus       319 ~~l~v~~~~-------------------------g~l~~~d~~tG~~~~~~~~~~~~---~~~~~~~~~~~l~v~~~~-G  369 (376)
T 3q7m_A          319 GNLVVGDSE-------------------------GYLHWINVEDGRFVAQQKVDSSG---FQTEPVAADGKLLIQAKD-G  369 (376)
T ss_dssp             TEEEEECTT-------------------------SEEEEEETTTCCEEEEEECCTTC---BCSCCEEETTEEEEEBTT-S
T ss_pred             CEEEEEeCC-------------------------CeEEEEECCCCcEEEEEecCCCc---ceeCCEEECCEEEEEeCC-C
Confidence            889999865                         47899997 68877666543221   223334458999999875 4


Q ss_pred             eEEEEc
Q 019290          337 YVVVIK  342 (343)
Q Consensus       337 ~i~~~~  342 (343)
                      .+..++
T Consensus       370 ~l~~~~  375 (376)
T 3q7m_A          370 TVYSIT  375 (376)
T ss_dssp             CEEEEE
T ss_pred             EEEEEe
Confidence            466665

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=98.75  E-value=5.7e-07  Score=81.15  Aligned_cols=158  Identities=11%  Similarity=-0.001  Sum_probs=93.6

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      ...++++.++|+.+.++..++.|..||..++.+....                 ........+..+++++++..|..+..
T Consensus        13 ~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~-----------------~~~~h~~~v~~~~~s~~~~~l~s~s~   75 (377)
T 3dwl_C           13 PSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHAR-----------------TFSDHDKIVTCVDWAPKSNRIVTCSQ   75 (377)
T ss_dssp             CCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECC-----------------CBCCCSSCEEEEEECTTTCCEEEEET
T ss_pred             cEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEE-----------------EEecCCceEEEEEEeCCCCEEEEEeC
Confidence            4789999999997777778888999988765322221                 11122335678999984445666643


Q ss_pred             CCeEEEEeCCCCe-EEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCc--
Q 019290          116 YFGLMVVGPNGGQ-AQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKN--  192 (343)
Q Consensus       116 ~~gi~~~d~~~~~-~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~--  192 (343)
                      ...|..+|.++++ ....... .. ....+..+++.+ ++.+.++...                 .+.|..+|..+++  
T Consensus        76 d~~v~vwd~~~~~~~~~~~~~-~~-~~~~v~~~~~~~-~~~~l~~~~~-----------------d~~i~iwd~~~~~~~  135 (377)
T 3dwl_C           76 DRNAYVYEKRPDGTWKQTLVL-LR-LNRAATFVRWSP-NEDKFAVGSG-----------------ARVISVCYFEQENDW  135 (377)
T ss_dssp             TSSEEEC------CCCCEEEC-CC-CSSCEEEEECCT-TSSCCEEEES-----------------SSCEEECCC-----C
T ss_pred             CCeEEEEEcCCCCceeeeeEe-cc-cCCceEEEEECC-CCCEEEEEec-----------------CCeEEEEEECCcccc
Confidence            3448889988765 1111111 11 123578889998 4665553322                 4567777776554  


Q ss_pred             --eEEeec-CCCCcceeEEecCCCEEEEEEcCCCeEEEEEcc
Q 019290          193 --VTVMYN-GLSFPNGVALSNNNSFLLLAESATLKILRFWLQ  231 (343)
Q Consensus       193 --~~~~~~-~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~  231 (343)
                        ...+.. .......++++++++.+... ..++.|..|++.
T Consensus       136 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~  176 (377)
T 3dwl_C          136 WVSKHLKRPLRSTILSLDWHPNNVLLAAG-CADRKAYVLSAY  176 (377)
T ss_dssp             CCCEEECSSCCSCEEEEEECTTSSEEEEE-ESSSCEEEEEEC
T ss_pred             eeeeEeecccCCCeEEEEEcCCCCEEEEE-eCCCEEEEEEEE
Confidence              333333 34557889999998866554 457889999975

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=98.75  E-value=2.7e-06  Score=77.73  Aligned_cols=191  Identities=9%  Similarity=-0.010  Sum_probs=121.6

Q ss_pred             CCceEEEcCCC-CeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEe
Q 019290           36 GPESLAFDCNG-EGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIAD  114 (343)
Q Consensus        36 ~p~~l~~d~~g-~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~  114 (343)
                      ...++++.+++ ++++++..++.|..||..+++.......                 ......+..+++++++..|+.+.
T Consensus       133 ~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-----------------~~~~~~v~~~~~~~~~~~l~~~~  195 (402)
T 2aq5_A          133 RVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGP-----------------DVHPDTIYSVDWSRDGALICTSC  195 (402)
T ss_dssp             CEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECT-----------------TTCCSCEEEEEECTTSSCEEEEE
T ss_pred             eEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEec-----------------CCCCCceEEEEECCCCCEEEEEe
Confidence            46789999998 6778888999999999887643322100                 01223467899998445566665


Q ss_pred             CCCeEEEEeCCCCeEEEcc-cccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCce
Q 019290          115 AYFGLMVVGPNGGQAQQLA-SSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNV  193 (343)
Q Consensus       115 ~~~gi~~~d~~~~~~~~~~-~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~  193 (343)
                      ....|..+|+++++..... ....   ...+..+++.+ ++.++++...              ....+.|..||..+++.
T Consensus       196 ~d~~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~l~~g~~--------------~~~d~~i~iwd~~~~~~  257 (402)
T 2aq5_A          196 RDKRVRVIEPRKGTVVAEKDRPHE---GTRPVHAVFVS-EGKILTTGFS--------------RMSERQVALWDTKHLEE  257 (402)
T ss_dssp             TTSEEEEEETTTTEEEEEEECSSC---SSSCCEEEECS-TTEEEEEEEC--------------TTCCEEEEEEETTBCSS
T ss_pred             cCCcEEEEeCCCCceeeeeccCCC---CCcceEEEEcC-CCcEEEEecc--------------CCCCceEEEEcCccccC
Confidence            4445999999887654432 1211   12367889999 5887775411              01156788888865442


Q ss_pred             --EEe-ecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeec--CCCCCCceeeCCCCCEEEE
Q 019290          194 --TVM-YNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAE--MPRFPDNIKSDSKGEFWIA  263 (343)
Q Consensus       194 --~~~-~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~p~~i~~d~~G~lwi~  263 (343)
                        ... .........++++++++.++++...++.|..|++.....  ....+..  ......++++.++|.+.++
T Consensus       258 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~--~~~~l~~~~~~~~v~~~~~sp~~~~~~s  330 (402)
T 2aq5_A          258 PLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAP--FLHYLSMFSSKESQRGMGYMPKRGLEVN  330 (402)
T ss_dssp             CSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTT--CEEEEEEECCSSCCSEEEECCGGGSCGG
T ss_pred             CceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCc--ceEeecccccCCcccceEEeccccccee
Confidence              111 223345778899999999988887789999999875321  0122221  1234567778887765443

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=98.73  E-value=1.5e-06  Score=78.61  Aligned_cols=181  Identities=10%  Similarity=-0.006  Sum_probs=106.1

Q ss_pred             eEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEe----
Q 019290           39 SLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIAD----  114 (343)
Q Consensus        39 ~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~----  114 (343)
                      ++++++||+.+++...+..|+.+|..+++...+...+                 ...........++ ++.++++.    
T Consensus        85 ~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~-----------------~~~~~~~~~~~~~-dg~~l~~~~~~~  146 (388)
T 3pe7_A           85 GGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVP-----------------AEWVGYGTWVANS-DCTKLVGIEIRR  146 (388)
T ss_dssp             SCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECC-----------------TTEEEEEEEEECT-TSSEEEEEEEEG
T ss_pred             ceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeech-----------------hhcccccceeECC-CCCeeccccccC
Confidence            6789999998887777889999999887765543211                 0000011122355 55554421    


Q ss_pred             -------------------CCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeC-CCCe-EEEEeCCcccccccceee
Q 019290          115 -------------------AYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDP-NTGI-VYFTDSSIYFQRRQYFMS  173 (343)
Q Consensus       115 -------------------~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~-~dg~-l~v~~~~~~~~~~~~~~~  173 (343)
                                         ....|+.+|+++++.+.+....     ..+..+++.| + |+ +.++.....         
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~-----~~~~~~~~sp~d-g~~l~~~~~~~~---------  211 (388)
T 3pe7_A          147 EDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQEN-----QWLGHPIYRPYD-DSTVAFCHEGPH---------  211 (388)
T ss_dssp             GGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEES-----SCEEEEEEETTE-EEEEEEEECSCT---------
T ss_pred             cccccccccchhhhhhccCCcceEEEEECCCCceEEeecCC-----ccccccEECCCC-CCEEEEEEecCC---------
Confidence                               1245999999998877664321     2356788888 5 54 444332100         


Q ss_pred             eeecCCCceEEEEeCCCCceEEeecCCC--CcceeEEecCCCEEEE-EEcCCC---eEEEEEccCccccccceeeecCCC
Q 019290          174 IATGDRSGRLLKYDPLKKNVTVMYNGLS--FPNGVALSNNNSFLLL-AESATL---KILRFWLQGERTTYTPQLFAEMPR  247 (343)
Q Consensus       174 ~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~i~~~~d~~~lyv-~~~~~~---~i~~~~~~~~~~~~~~~~~~~~~~  247 (343)
                         ......|+.+|.++++.+.+.....  .....+++|||+.|++ +...+.   .|+++++.+    ++.+.+...++
T Consensus       212 ---~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~----g~~~~l~~~~~  284 (388)
T 3pe7_A          212 ---DLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPET----LENRQLTSMPA  284 (388)
T ss_dssp             ---TTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTT----CCEEEEEEECC
T ss_pred             ---CCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCC----CceEEEEcCCC
Confidence               0113479999988777666554332  2345789999997754 443332   399999876    33233322221


Q ss_pred             ------CCCceeeCCCCC
Q 019290          248 ------FPDNIKSDSKGE  259 (343)
Q Consensus       248 ------~p~~i~~d~~G~  259 (343)
                            .+++..+.+||+
T Consensus       285 ~~~~~~~~~~~~~spdg~  302 (388)
T 3pe7_A          285 CSHLMSNYDGSLMVGDGS  302 (388)
T ss_dssp             EEEEEECTTSSEEEEEEC
T ss_pred             ceeeeecCCCCeEccCCC
Confidence                  155566777775

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.73  E-value=4.7e-06  Score=75.42  Aligned_cols=217  Identities=10%  Similarity=0.023  Sum_probs=121.1

Q ss_pred             CCeeEEEecCCEEEEEEcCCCCeE-EeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCCCeEEEEeC
Q 019290           46 GEGPYVGVSDGRILKWKAANSGWT-EFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFGLMVVGP  124 (343)
Q Consensus        46 g~~l~~~~~~g~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~~gi~~~d~  124 (343)
                      +..+|+++.++.|+.+|..+++.. .+....                 ...   ....+.  ++.+|++....+|+.+|.
T Consensus       103 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~-----------------~~~---~~p~~~--~~~v~v~~~~g~l~~~d~  160 (376)
T 3q7m_A          103 GGHVYIGSEKAQVYALNTSDGTVAWQTKVAG-----------------EAL---SRPVVS--DGLVLIHTSNGQLQALNE  160 (376)
T ss_dssp             TTEEEEEETTSEEEEEETTTCCEEEEEECSS-----------------CCC---SCCEEE--TTEEEEECTTSEEEEEET
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEEEEeCCC-----------------ceE---cCCEEE--CCEEEEEcCCCeEEEEEC
Confidence            344888888999999999877643 221100                 000   112333  679999865556999999


Q ss_pred             CCCeEEEcccccCCC-CccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEeecCCC--
Q 019290          125 NGGQAQQLASSAGGI-PFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLS--  201 (343)
Q Consensus       125 ~~~~~~~~~~~~~~~-~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~--  201 (343)
                      ++|+........... ........+++.  +.+|++..                  .+.|+.+|+.+|+..-......  
T Consensus       161 ~tG~~~W~~~~~~~~~~~~~~~~~~~~~--~~v~~g~~------------------~g~l~~~d~~tG~~~w~~~~~~~~  220 (376)
T 3q7m_A          161 ADGAVKWTVNLDMPSLSLRGESAPTTAF--GAAVVGGD------------------NGRVSAVLMEQGQMIWQQRISQAT  220 (376)
T ss_dssp             TTCCEEEEEECCC-----CCCCCCEEET--TEEEECCT------------------TTEEEEEETTTCCEEEEEECCC--
T ss_pred             CCCcEEEEEeCCCCceeecCCCCcEEEC--CEEEEEcC------------------CCEEEEEECCCCcEEEEEecccCC
Confidence            999866543221110 001113344443  78998543                  4579999988777642221100  


Q ss_pred             ---------Cc-ceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEeccCCCcc
Q 019290          202 ---------FP-NGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNSARGKI  271 (343)
Q Consensus       202 ---------~~-~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~~~~~~~  271 (343)
                               .. ....+  .++.+|+.. ..+.|+.++...    ++..--..... ...+..+ ++++|+++..     
T Consensus       221 ~~~~~~~~~~~~~~p~~--~~~~v~~~~-~~g~l~~~d~~t----G~~~w~~~~~~-~~~~~~~-~~~l~~~~~~-----  286 (376)
T 3q7m_A          221 GSTEIDRLSDVDTTPVV--VNGVVFALA-YNGNLTALDLRS----GQIMWKRELGS-VNDFIVD-GNRIYLVDQN-----  286 (376)
T ss_dssp             ---------CCCCCCEE--ETTEEEEEC-TTSCEEEEETTT----CCEEEEECCCC-EEEEEEE-TTEEEEEETT-----
T ss_pred             CCcccccccccCCCcEE--ECCEEEEEe-cCcEEEEEECCC----CcEEeeccCCC-CCCceEE-CCEEEEEcCC-----
Confidence                     01 11122  245677764 467899999764    22211111221 2234444 6789999864     


Q ss_pred             ccccccccccccCCCcccCCCeEEEECC-CCCEEEEeeCCCCCccCCceeEEEeCCEEEEecCCCCeEEEEc
Q 019290          272 ESNKKTAFCEETAKPWFLRDPVGVKFDV-NGNVVDVLDGNEGNTLNSVSEVQEYGEYLYTGSSVQPYVVVIK  342 (343)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~~~~i~~~~  342 (343)
                                          +.++++|+ +|+..-.......   .........+++||+++.. ..+..++
T Consensus       287 --------------------g~l~~~d~~tG~~~w~~~~~~~---~~~~~~~~~~~~l~v~~~~-g~l~~~d  334 (376)
T 3q7m_A          287 --------------------DRVMALTIDGGVTLWTQSDLLH---RLLTSPVLYNGNLVVGDSE-GYLHWIN  334 (376)
T ss_dssp             --------------------CCEEEEETTTCCEEEEECTTTT---SCCCCCEEETTEEEEECTT-SEEEEEE
T ss_pred             --------------------CeEEEEECCCCcEEEeecccCC---CcccCCEEECCEEEEEeCC-CeEEEEE
Confidence                                47889997 5776554432211   2233334458899998764 3566555

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=98.73  E-value=4.4e-05  Score=69.16  Aligned_cols=262  Identities=14%  Similarity=0.071  Sum_probs=142.2

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeee-cCCC-------cc-ccccCCC-CC-----------------
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFAT-TAPH-------RA-REICDGS-TN-----------------   88 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~-~~~~-------~~-~~~~~~~-~~-----------------   88 (343)
                      ...++++.++|+.+.++..++.|..||..+++...... ....       +. ..+..+. ..                 
T Consensus        68 ~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~  147 (380)
T 3iz6_a           68 KVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNM  147 (380)
T ss_dssp             CEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSS
T ss_pred             EEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCc
Confidence            46789999999988889999999999987754332211 0000       00 0000000 00                 


Q ss_pred             ---cccCCCcCCeeeEEEeCCCC-eEEEEeCCCeEEEEeCCCCeEEEcccc-cCCCCccCcceeEEeCCCCeEEEEeCCc
Q 019290           89 ---TTLEPLCGRPLGIKFNPVTC-DLYIADAYFGLMVVGPNGGQAQQLASS-AGGIPFRFTNDLDIDPNTGIVYFTDSSI  163 (343)
Q Consensus        89 ---~~~~~~~~~p~gi~~~~~~~-~l~v~~~~~gi~~~d~~~~~~~~~~~~-~~~~~~~~~~~i~~d~~dg~l~v~~~~~  163 (343)
                         .......+.+..+.+.+.++ .|..+.....|..+|.++++....... ........+..+++.+.++.++++... 
T Consensus       148 ~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~-  226 (380)
T 3iz6_a          148 PVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSC-  226 (380)
T ss_dssp             TTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEET-
T ss_pred             cceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEEC-
Confidence               00001111233445555333 355553333488899887765433211 111112345667776534666665433 


Q ss_pred             ccccccceeeeeecCCCceEEEEeCC-CCc-eEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCcccccccee
Q 019290          164 YFQRRQYFMSIATGDRSGRLLKYDPL-KKN-VTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQL  241 (343)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~v~~~d~~-~~~-~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~  241 (343)
                                      .+.|..||.. ++. ...+.......+.++++|++..+ ++.+.++.|..|++.....   ...
T Consensus       227 ----------------D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l-~s~s~D~~i~lwd~~~~~~---~~~  286 (380)
T 3iz6_a          227 ----------------DTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRF-GTGSDDGTCRLFDMRTGHQ---LQV  286 (380)
T ss_dssp             ----------------TSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEE-EEECSSSCEEEEETTTTEE---EEE
T ss_pred             ----------------CCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeE-EEEcCCCeEEEEECCCCcE---EEE
Confidence                            4568888865 222 33444444567899999998854 5566789999999875321   112


Q ss_pred             eecCC-------CCCCceeeCCCCCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECC-CCCEEEEeeCCCCC
Q 019290          242 FAEMP-------RFPDNIKSDSKGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDV-NGNVVDVLDGNEGN  313 (343)
Q Consensus       242 ~~~~~-------~~p~~i~~d~~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~~~~~~  313 (343)
                      +....       .....++++++|++.++...                        .+.|..+|. .++....+......
T Consensus       287 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~------------------------dg~i~vwd~~~~~~~~~~~~~~~~  342 (380)
T 3iz6_a          287 YNREPDRNDNELPIVTSVAFSISGRLLFAGYS------------------------NGDCYVWDTLLAEMVLNLGTLQNS  342 (380)
T ss_dssp             ECCCCSSSCCSSCSCSEEEECSSSSEEEEECT------------------------TSCEEEEETTTCCEEEEECCSCSS
T ss_pred             ecccccccccccCceEEEEECCCCCEEEEEEC------------------------CCCEEEEECCCCceEEEEecccCC
Confidence            21110       11345788999988887665                        356777886 45555554321111


Q ss_pred             ccCCceeEEEe-CCEEEEecCCCCeEEEEc
Q 019290          314 TLNSVSEVQEY-GEYLYTGSSVQPYVVVIK  342 (343)
Q Consensus       314 ~~~~~~~~~~~-~g~l~i~~~~~~~i~~~~  342 (343)
                      ....+..+... +|++.+++.....|.+++
T Consensus       343 h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~  372 (380)
T 3iz6_a          343 HEGRISCLGLSSDGSALCTGSWDKNLKIWA  372 (380)
T ss_dssp             CCCCCCEEEECSSSSEEEEECTTSCEEEEE
T ss_pred             CCCceEEEEECCCCCEEEEeeCCCCEEEEe
Confidence            23445555444 555555555555555543

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=98.73  E-value=3.5e-05  Score=68.76  Aligned_cols=188  Identities=12%  Similarity=0.038  Sum_probs=113.0

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      ...++++.+++..+.++..++.|..||..+++......                   .....+..+++++++..|..+..
T Consensus        78 ~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~-------------------~h~~~v~~v~~sp~~~~l~s~~~  138 (343)
T 2xzm_R           78 FVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFV-------------------GHQSEVYSVAFSPDNRQILSAGA  138 (343)
T ss_dssp             CEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEE-------------------CCCSCEEEEEECSSTTEEEEEET
T ss_pred             ceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEc-------------------CCCCcEEEEEECCCCCEEEEEcC
Confidence            35689999999988888999999999988765332111                   12234678999984445666644


Q ss_pred             CCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCC----------eEEEEeCCcccccccceeeeeecCCCceEEE
Q 019290          116 YFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTG----------IVYFTDSSIYFQRRQYFMSIATGDRSGRLLK  185 (343)
Q Consensus       116 ~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg----------~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~  185 (343)
                      ...|..+|..+......... .. ....+..+++.+ ++          .++++..                 ..+.|..
T Consensus       139 d~~i~~wd~~~~~~~~~~~~-~~-~~~~v~~~~~~~-~~~~~~~~~~~~~~l~s~~-----------------~d~~i~i  198 (343)
T 2xzm_R          139 EREIKLWNILGECKFSSAEK-EN-HSDWVSCVRYSP-IMKSANKVQPFAPYFASVG-----------------WDGRLKV  198 (343)
T ss_dssp             TSCEEEEESSSCEEEECCTT-TS-CSSCEEEEEECC-CCCSCSCCCSSCCEEEEEE-----------------TTSEEEE
T ss_pred             CCEEEEEeccCCceeeeecc-cC-CCceeeeeeecc-ccccccccCCCCCEEEEEc-----------------CCCEEEE
Confidence            44488999875433332211 11 123466777777 34          3333222                 1456778


Q ss_pred             EeCCCCceEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEec
Q 019290          186 YDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMN  265 (343)
Q Consensus       186 ~d~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~  265 (343)
                      +|........+.........++++++++.|. +...++.|..|++.....  ....+ ........+++++++.+..+..
T Consensus       199 wd~~~~~~~~~~~h~~~v~~~~~s~~g~~l~-sgs~dg~v~iwd~~~~~~--~~~~~-~~~~~v~~v~~sp~~~~la~~~  274 (343)
T 2xzm_R          199 WNTNFQIRYTFKAHESNVNHLSISPNGKYIA-TGGKDKKLLIWDILNLTY--PQREF-DAGSTINQIAFNPKLQWVAVGT  274 (343)
T ss_dssp             EETTTEEEEEEECCSSCEEEEEECTTSSEEE-EEETTCEEEEEESSCCSS--CSEEE-ECSSCEEEEEECSSSCEEEEEE
T ss_pred             EcCCCceeEEEcCccccceEEEECCCCCEEE-EEcCCCeEEEEECCCCcc--cceee-cCCCcEEEEEECCCCCEEEEEC
Confidence            8854333333344445678899999998654 455688999999843211  11122 1122245677888887665544


Q ss_pred             c
Q 019290          266 S  266 (343)
Q Consensus       266 ~  266 (343)
                      .
T Consensus       275 d  275 (343)
T 2xzm_R          275 D  275 (343)
T ss_dssp             S
T ss_pred             C
Confidence            3

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=98.72  E-value=4.5e-05  Score=67.37  Aligned_cols=185  Identities=8%  Similarity=0.059  Sum_probs=113.6

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      ...++++.++|+.+.++..++.|..||..+++......                   .....+..+.+++++..|..+..
T Consensus        67 ~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~-------------------~h~~~v~~~~~~~~~~~l~s~s~  127 (319)
T 3frx_A           67 IVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV-------------------GHKSDVMSVDIDKKASMIISGSR  127 (319)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-------------------CCSSCEEEEEECTTSCEEEEEET
T ss_pred             cEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEc-------------------cCCCcEEEEEEcCCCCEEEEEeC
Confidence            35678999999988888999999999998765332111                   12234678899983344555543


Q ss_pred             CCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCC-----CCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCC
Q 019290          116 YFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPN-----TGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLK  190 (343)
Q Consensus       116 ~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~-----dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~  190 (343)
                      ...|..+|.++.....+.. .    ...+..+.+.+.     ++.+.++...                 .+.|..+|..+
T Consensus       128 D~~i~vwd~~~~~~~~~~~-h----~~~v~~~~~~~~~~~~~~~~~l~s~~~-----------------d~~i~~wd~~~  185 (319)
T 3frx_A          128 DKTIKVWTIKGQCLATLLG-H----NDWVSQVRVVPNEKADDDSVTIISAGN-----------------DKMVKAWNLNQ  185 (319)
T ss_dssp             TSCEEEEETTSCEEEEECC-C----SSCEEEEEECCC------CCEEEEEET-----------------TSCEEEEETTT
T ss_pred             CCeEEEEECCCCeEEEEec-c----CCcEEEEEEccCCCCCCCccEEEEEeC-----------------CCEEEEEECCc
Confidence            3348889987655444321 1    123556666652     1223443222                 45688888876


Q ss_pred             CceEE-eecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEecc
Q 019290          191 KNVTV-MYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNS  266 (343)
Q Consensus       191 ~~~~~-~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~~  266 (343)
                      .+... +.........++++|+++.+. +...++.|..|++.....   ...+. .......+++.++|.+.++...
T Consensus       186 ~~~~~~~~~h~~~v~~~~~sp~g~~l~-s~~~dg~i~iwd~~~~~~---~~~~~-~~~~v~~~~~sp~~~~la~~~~  257 (319)
T 3frx_A          186 FQIEADFIGHNSNINTLTASPDGTLIA-SAGKDGEIMLWNLAAKKA---MYTLS-AQDEVFSLAFSPNRYWLAAATA  257 (319)
T ss_dssp             TEEEEEECCCCSCEEEEEECTTSSEEE-EEETTCEEEEEETTTTEE---EEEEE-CCSCEEEEEECSSSSEEEEEET
T ss_pred             chhheeecCCCCcEEEEEEcCCCCEEE-EEeCCCeEEEEECCCCcE---EEEec-CCCcEEEEEEcCCCCEEEEEcC
Confidence            65443 333345578899999998554 445688999999865221   11221 2222445788999977666544

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=98.72  E-value=9.1e-06  Score=73.57  Aligned_cols=245  Identities=11%  Similarity=0.049  Sum_probs=143.2

Q ss_pred             CCceEEEcCC----C---CeeEEEecCCEEEEEEcCCCC------eEEeeecCCCccccccCCCCCcccCCCcCCeeeEE
Q 019290           36 GPESLAFDCN----G---EGPYVGVSDGRILKWKAANSG------WTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIK  102 (343)
Q Consensus        36 ~p~~l~~d~~----g---~~l~~~~~~g~i~~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~  102 (343)
                      ...++++.++    |   +.++++..++.|..|+..+++      ...+.....               ......+..+.
T Consensus        64 ~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~v~~~~  128 (397)
T 1sq9_A           64 GLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDS---------------DMKKHSFWALK  128 (397)
T ss_dssp             CEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCT---------------TGGGSCEEEEE
T ss_pred             cEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeeccccc---------------ccCCCcEEEEE
Confidence            3578999998    8   878888889999999887654      333321000               00024567899


Q ss_pred             Ee----CCCCe-EEEEeCCCeEEEEeCCC------CeE-E-----Eccc--ccCCCCccCcceeEEeCCCCeEEEEeCCc
Q 019290          103 FN----PVTCD-LYIADAYFGLMVVGPNG------GQA-Q-----QLAS--SAGGIPFRFTNDLDIDPNTGIVYFTDSSI  163 (343)
Q Consensus       103 ~~----~~~~~-l~v~~~~~gi~~~d~~~------~~~-~-----~~~~--~~~~~~~~~~~~i~~d~~dg~l~v~~~~~  163 (343)
                      +.    +++.. |+++.....|..+|.++      ++. .     .+..  .........+..+++.+ ++ ++++... 
T Consensus       129 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~~~~~-  205 (397)
T 1sq9_A          129 WGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE-RG-LIATGFN-  205 (397)
T ss_dssp             EECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT-TS-EEEEECT-
T ss_pred             EeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECC-Cc-eEEEEeC-
Confidence            99    74555 66664444488888765      321 1     1100  00011224578999999 47 5554332 


Q ss_pred             ccccccceeeeeecCCCceEEEEeCCCCceEEeecC-------CCCcceeEEecCCCEEEEEEcCC---CeEEEEEccCc
Q 019290          164 YFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNG-------LSFPNGVALSNNNSFLLLAESAT---LKILRFWLQGE  233 (343)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-------~~~~~~i~~~~d~~~lyv~~~~~---~~i~~~~~~~~  233 (343)
                                      .+.|..||..+++.......       ......+++++++..++++. .+   +.|..|++...
T Consensus       206 ----------------dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~-~d~~~g~i~i~d~~~~  268 (397)
T 1sq9_A          206 ----------------NGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAH-DSNSFGCITLYETEFG  268 (397)
T ss_dssp             ----------------TSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEE-EETTEEEEEEEETTTC
T ss_pred             ----------------CCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEe-cCCCCceEEEEECCCC
Confidence                            56788899876665433333       45678899999998766554 45   78999998653


Q ss_pred             cccccceeeec-------------CCCCCCceeeCCCCCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECC-
Q 019290          234 RTTYTPQLFAE-------------MPRFPDNIKSDSKGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDV-  299 (343)
Q Consensus       234 ~~~~~~~~~~~-------------~~~~p~~i~~d~~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~-  299 (343)
                      ..   ...+..             .......++++++|+++++...                        .+.|..+|. 
T Consensus       269 ~~---~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------------------------dg~i~iwd~~  321 (397)
T 1sq9_A          269 ER---IGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGW------------------------DGKLRFWDVK  321 (397)
T ss_dssp             CE---EEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEET------------------------TSEEEEEETT
T ss_pred             cc---cceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeC------------------------CCeEEEEEcC
Confidence            21   112211             1222345778889987776654                        346777886 


Q ss_pred             CCCEEEEeeCCCC--Cc---------------cCCceeEEEe-CC----------EEEEecCCCCeEEEEc
Q 019290          300 NGNVVDVLDGNEG--NT---------------LNSVSEVQEY-GE----------YLYTGSSVQPYVVVIK  342 (343)
Q Consensus       300 ~g~~~~~~~~~~~--~~---------------~~~~~~~~~~-~g----------~l~i~~~~~~~i~~~~  342 (343)
                      .++.+..+..+..  ..               ...+..+... ++          +++++......|.+++
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~  392 (397)
T 1sq9_A          322 TKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR  392 (397)
T ss_dssp             TTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred             CCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEE
Confidence            4666666551100  01               2345555544 44          5666666667777665

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=98.72  E-value=1e-05  Score=75.10  Aligned_cols=159  Identities=13%  Similarity=0.097  Sum_probs=101.2

Q ss_pred             CCceEEEcCCCCee-EEEecCCEEEEEEcC--CCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEE
Q 019290           36 GPESLAFDCNGEGP-YVGVSDGRILKWKAA--NSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYI  112 (343)
Q Consensus        36 ~p~~l~~d~~g~~l-~~~~~~g~i~~~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v  112 (343)
                      ...+++++++|+.+ +++..++.|..||..  ++.........                 .....+..+++++++..|++
T Consensus       104 ~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~-----------------~~~~~v~~~~~sp~~~~l~~  166 (450)
T 2vdu_B          104 YIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRF-----------------CFSKRPNAISIAEDDTTVII  166 (450)
T ss_dssp             CEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEE-----------------ECSSCEEEEEECTTSSEEEE
T ss_pred             ceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecc-----------------cCCCCceEEEEcCCCCEEEE
Confidence            36789999999975 567788999999987  55433221100                 11234678999985556777


Q ss_pred             EeCCCeEEEEeCCCCeEEE-cccccCCCCccCcceeEEeCCC---CeEEEEeCCcccccccceeeeeecCCCceEEEEeC
Q 019290          113 ADAYFGLMVVGPNGGQAQQ-LASSAGGIPFRFTNDLDIDPNT---GIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDP  188 (343)
Q Consensus       113 ~~~~~gi~~~d~~~~~~~~-~~~~~~~~~~~~~~~i~~d~~d---g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~  188 (343)
                      ++....++.++..+++... ......+ ....+..+++.+ +   +.++++...                 .+.|..||.
T Consensus       167 ~~~~g~v~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~sp-~~~~~~~l~s~~~-----------------d~~i~vwd~  227 (450)
T 2vdu_B          167 ADKFGDVYSIDINSIPEEKFTQEPILG-HVSMLTDVHLIK-DSDGHQFIITSDR-----------------DEHIKISHY  227 (450)
T ss_dssp             EETTSEEEEEETTSCCCSSCCCCCSEE-CSSCEEEEEEEE-CTTSCEEEEEEET-----------------TSCEEEEEE
T ss_pred             EeCCCcEEEEecCCcccccccceeeec-ccCceEEEEEcC-CCCCCcEEEEEcC-----------------CCcEEEEEC
Confidence            7544459999987665331 1011111 124578889988 6   666554432                 456777777


Q ss_pred             CCCceE-Eee-cCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290          189 LKKNVT-VMY-NGLSFPNGVALSNNNSFLLLAESATLKILRFWLQG  232 (343)
Q Consensus       189 ~~~~~~-~~~-~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~  232 (343)
                      .+++.. .+. ........++++ +++.++.+ ..++.|..|++..
T Consensus       228 ~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~-~~d~~v~vwd~~~  271 (450)
T 2vdu_B          228 PQCFIVDKWLFGHKHFVSSICCG-KDYLLLSA-GGDDKIFAWDWKT  271 (450)
T ss_dssp             SCTTCEEEECCCCSSCEEEEEEC-STTEEEEE-ESSSEEEEEETTT
T ss_pred             CCCceeeeeecCCCCceEEEEEC-CCCEEEEE-eCCCeEEEEECCC
Confidence            666543 222 333557889999 88866654 4688999999875

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=98.71  E-value=9.7e-07  Score=84.94  Aligned_cols=182  Identities=8%  Similarity=-0.035  Sum_probs=110.6

Q ss_pred             CCceEEEcCCCCeeEEEec-----CCEEEEEEc--CCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCC
Q 019290           36 GPESLAFDCNGEGPYVGVS-----DGRILKWKA--ANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTC  108 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~-----~g~i~~~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~  108 (343)
                      ...++++++| +++|+...     ..+|+.++.  .++.. .+.                     ........++.++++
T Consensus        66 ~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~---------------------~~~~~~~~~~s~dg~  122 (582)
T 3o4h_A           66 SVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLE---------------------AVKPMRILSGVDTGE  122 (582)
T ss_dssp             EECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCE-ECT---------------------TSCSBEEEEEEECSS
T ss_pred             ccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccc-ccc---------------------CCCCceeeeeCCCCC
Confidence            3567788888 76775543     226777877  44332 211                     111122345555333


Q ss_pred             -eEEEEeCCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEe
Q 019290          109 -DLYIADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYD  187 (343)
Q Consensus       109 -~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d  187 (343)
                       .+|++....++..+|.++++.+.+....      . .+++++| ||+.++.....             ......|+++|
T Consensus       123 ~~~~~s~~~~~~~l~d~~~g~~~~l~~~~------~-~~~~~sp-DG~~la~~~~~-------------~~~~~~i~~~d  181 (582)
T 3o4h_A          123 AVVFTGATEDRVALYALDGGGLRELARLP------G-FGFVSDI-RGDLIAGLGFF-------------GGGRVSLFTSN  181 (582)
T ss_dssp             CEEEEEECSSCEEEEEEETTEEEEEEEES------S-CEEEEEE-ETTEEEEEEEE-------------ETTEEEEEEEE
T ss_pred             eEEEEecCCCCceEEEccCCcEEEeecCC------C-ceEEECC-CCCEEEEEEEc-------------CCCCeEEEEEc
Confidence             4565554556778899888877664321      1 6788999 58766633220             11124699999


Q ss_pred             CCCCceEEeecCCCCcceeEEecCCCEEEEEEcCCC--eEEEEEccCccccccceeeecCCCCCCcee--------eCCC
Q 019290          188 PLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESATL--KILRFWLQGERTTYTPQLFAEMPRFPDNIK--------SDSK  257 (343)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~--------~d~~  257 (343)
                      .++++.+.+..........+++|||+.|+.++ ..+  .|+++++++.    +.+.+......+.+++        +++|
T Consensus       182 ~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~-~~~~~~i~~~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~spd  256 (582)
T 3o4h_A          182 LSSGGLRVFDSGEGSFSSASISPGMKVTAGLE-TAREARLVTVDPRDG----SVEDLELPSKDFSSYRPTAITWLGYLPD  256 (582)
T ss_dssp             TTTCCCEEECCSSCEEEEEEECTTSCEEEEEE-CSSCEEEEEECTTTC----CEEECCCSCSHHHHHCCSEEEEEEECTT
T ss_pred             CCCCCceEeecCCCccccceECCCCCEEEEcc-CCCeeEEEEEcCCCC----cEEEccCCCcChhhhhhccccceeEcCC
Confidence            98888877655545568899999999888444 455  8999998763    3232221222223345        8999


Q ss_pred             CCEEEEecc
Q 019290          258 GEFWIAMNS  266 (343)
Q Consensus       258 G~lwi~~~~  266 (343)
                      |.++++...
T Consensus       257 g~~~~~~~~  265 (582)
T 3o4h_A          257 GRLAVVARR  265 (582)
T ss_dssp             SCEEEEEEE
T ss_pred             CcEEEEEEc
Confidence            988887765

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=98.71  E-value=3.9e-05  Score=68.87  Aligned_cols=240  Identities=15%  Similarity=0.108  Sum_probs=140.9

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      ...++++.|+|..+.++..++.+..|+...........    .         .............+.+.+++..|..+..
T Consensus       108 ~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~----~---------~~~~~~h~~~v~~~~~~~~~~~l~t~s~  174 (354)
T 2pbi_B          108 WVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAA----K---------KKSVAMHTNYLSACSFTNSDMQILTASG  174 (354)
T ss_dssp             CCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGG----G---------CEEEEECSSCEEEEEECSSSSEEEEEET
T ss_pred             CEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccc----c---------ceeeeccCCcEEEEEEeCCCCEEEEEeC
Confidence            46789999999988888889999888764321000000    0         0000011223567888884456666654


Q ss_pred             CCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCC-CCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceE
Q 019290          116 YFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPN-TGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVT  194 (343)
Q Consensus       116 ~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~-dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~  194 (343)
                      ...|..+|.++++.........    ..+..+.+.+. +|.++++...                 .+.|..||..+++..
T Consensus       175 D~~v~lwd~~~~~~~~~~~~h~----~~v~~~~~~~~~~g~~l~sgs~-----------------Dg~v~~wd~~~~~~~  233 (354)
T 2pbi_B          175 DGTCALWDVESGQLLQSFHGHG----ADVLCLDLAPSETGNTFVSGGC-----------------DKKAMVWDMRSGQCV  233 (354)
T ss_dssp             TSEEEEEETTTCCEEEEEECCS----SCEEEEEECCCSSCCEEEEEET-----------------TSCEEEEETTTCCEE
T ss_pred             CCcEEEEeCCCCeEEEEEcCCC----CCeEEEEEEeCCCCCEEEEEeC-----------------CCeEEEEECCCCcEE
Confidence            4458999998887543322211    23455666542 2555554332                 467888998777654


Q ss_pred             E-eecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCC--CCCCceeeCCCCCEEEEeccCCCcc
Q 019290          195 V-MYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMP--RFPDNIKSDSKGEFWIAMNSARGKI  271 (343)
Q Consensus       195 ~-~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--~~p~~i~~d~~G~lwi~~~~~~~~~  271 (343)
                      . +.......+.++++|++..+. +...++.|..|++.....   ...+....  .....+.++++|++.++...     
T Consensus       234 ~~~~~h~~~v~~v~~~p~~~~l~-s~s~D~~v~lwd~~~~~~---~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~-----  304 (354)
T 2pbi_B          234 QAFETHESDVNSVRYYPSGDAFA-SGSDDATCRLYDLRADRE---VAIYSKESIIFGASSVDFSLSGRLLFAGYN-----  304 (354)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEE-EEETTSCEEEEETTTTEE---EEEECCTTCCSCEEEEEECTTSSEEEEEET-----
T ss_pred             EEecCCCCCeEEEEEeCCCCEEE-EEeCCCeEEEEECCCCcE---EEEEcCCCcccceeEEEEeCCCCEEEEEEC-----
Confidence            3 333345578899999988554 555688999999865321   11221111  11234678899988777655     


Q ss_pred             ccccccccccccCCCcccCCCeEEEECC-CCCEEEEeeCCCCCccCCceeEEEe-CCEEEEecCCCCeEEEE
Q 019290          272 ESNKKTAFCEETAKPWFLRDPVGVKFDV-NGNVVDVLDGNEGNTLNSVSEVQEY-GEYLYTGSSVQPYVVVI  341 (343)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~~~~i~~~  341 (343)
                                         .+.|..+|. +++.+..+...    ...+..+... +|++.++......|.++
T Consensus       305 -------------------d~~i~vwd~~~~~~~~~l~~h----~~~v~~l~~spdg~~l~sgs~D~~v~vW  353 (354)
T 2pbi_B          305 -------------------DYTINVWDVLKGSRVSILFGH----ENRVSTLRVSPDGTAFCSGSWDHTLRVW  353 (354)
T ss_dssp             -------------------TSCEEEEETTTCSEEEEECCC----SSCEEEEEECTTSSCEEEEETTSEEEEE
T ss_pred             -------------------CCcEEEEECCCCceEEEEECC----CCcEEEEEECCCCCEEEEEcCCCCEEec
Confidence                               346777775 57666555432    2345555544 56655555555566554

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=98.71  E-value=3.9e-05  Score=69.88  Aligned_cols=203  Identities=9%  Similarity=-0.015  Sum_probs=114.5

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      ...++++.++|+.+.++ .++.+..|+..+++................ .............+..+++++++..|..+..
T Consensus        66 ~V~~v~fspdg~~la~g-~~~~v~i~~~~~g~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~  143 (393)
T 1erj_A           66 VVCCVKFSNDGEYLATG-CNKTTQVYRVSDGSLVARLSDDSAANKDPE-NLNTSSSPSSDLYIRSVCFSPDGKFLATGAE  143 (393)
T ss_dssp             CCCEEEECTTSSEEEEE-CBSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEECTTSSEEEEEET
T ss_pred             EEEEEEECCCCCEEEEE-cCCcEEEEEecCCCEEEEecCccccccccc-cccccccCCCceeEEEEEECCCCCEEEEEcC
Confidence            46799999999965555 456788888877654322111000000000 0000000001113568999984445555543


Q ss_pred             CCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEE
Q 019290          116 YFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTV  195 (343)
Q Consensus       116 ~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~  195 (343)
                      ...|..+|.++++........    ...+..+++.+ ++...++...                 .+.|..||..+++...
T Consensus       144 d~~i~iwd~~~~~~~~~~~~h----~~~v~~~~~~p-~~~~l~s~s~-----------------d~~v~iwd~~~~~~~~  201 (393)
T 1erj_A          144 DRLIRIWDIENRKIVMILQGH----EQDIYSLDYFP-SGDKLVSGSG-----------------DRTVRIWDLRTGQCSL  201 (393)
T ss_dssp             TSCEEEEETTTTEEEEEECCC----SSCEEEEEECT-TSSEEEEEET-----------------TSEEEEEETTTTEEEE
T ss_pred             CCeEEEEECCCCcEEEEEccC----CCCEEEEEEcC-CCCEEEEecC-----------------CCcEEEEECCCCeeEE
Confidence            344899999988755433222    13478899999 4776664433                 4678888988776544


Q ss_pred             eecCCCCcceeEEec-CCCEEEEEEcCCCeEEEEEccCccccccceeeec----CCC---CCCceeeCCCCCEEEEecc
Q 019290          196 MYNGLSFPNGVALSN-NNSFLLLAESATLKILRFWLQGERTTYTPQLFAE----MPR---FPDNIKSDSKGEFWIAMNS  266 (343)
Q Consensus       196 ~~~~~~~~~~i~~~~-d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~----~~~---~p~~i~~d~~G~lwi~~~~  266 (343)
                      ..........+++++ +++. +++...++.|..|++.....   ...+..    ..+   ....++++++|++.++...
T Consensus       202 ~~~~~~~v~~~~~~~~~~~~-l~~~s~d~~v~iwd~~~~~~---~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~  276 (393)
T 1erj_A          202 TLSIEDGVTTVAVSPGDGKY-IAAGSLDRAVRVWDSETGFL---VERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL  276 (393)
T ss_dssp             EEECSSCEEEEEECSTTCCE-EEEEETTSCEEEEETTTCCE---EEEEC------CCCSSCEEEEEECTTSSEEEEEET
T ss_pred             EEEcCCCcEEEEEECCCCCE-EEEEcCCCcEEEEECCCCcE---EEeecccccCCCCCCCCEEEEEECCCCCEEEEEeC
Confidence            333334567788888 6664 45556788999999765321   111110    011   1334678889987776554

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=98.70  E-value=1.4e-05  Score=72.13  Aligned_cols=156  Identities=13%  Similarity=0.044  Sum_probs=104.1

Q ss_pred             CCceEEEcC-CCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEe
Q 019290           36 GPESLAFDC-NGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIAD  114 (343)
Q Consensus        36 ~p~~l~~d~-~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~  114 (343)
                      ...++++.+ +++.++++..++.|..||..+.....+....                 .....+..+++++++..|+.+.
T Consensus       120 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-----------------~~~~~v~~~~~~~~~~~l~~~~  182 (383)
T 3ei3_B          120 AITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTD-----------------SWDYWYCCVDVSVSRQMLATGD  182 (383)
T ss_dssp             BEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCC-----------------CSSCCEEEEEEETTTTEEEEEE
T ss_pred             ceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccC-----------------CCCCCeEEEEECCCCCEEEEEC
Confidence            467899999 6787888889999999999875555443211                 1123467899998555666665


Q ss_pred             CCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCe-EEEEeCCcccccccceeeeeecCCCceEEEEeCCC---
Q 019290          115 AYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGI-VYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLK---  190 (343)
Q Consensus       115 ~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~---  190 (343)
                      ....|..+|.+......+. ..    ...+..+++.+ ++. ++++...                 .+.|..||..+   
T Consensus       183 ~d~~i~i~d~~~~~~~~~~-~h----~~~v~~~~~~~-~~~~~l~s~~~-----------------d~~i~iwd~~~~~~  239 (383)
T 3ei3_B          183 STGRLLLLGLDGHEIFKEK-LH----KAKVTHAEFNP-RCDWLMATSSV-----------------DATVKLWDLRNIKD  239 (383)
T ss_dssp             TTSEEEEEETTSCEEEEEE-CS----SSCEEEEEECS-SCTTEEEEEET-----------------TSEEEEEEGGGCCS
T ss_pred             CCCCEEEEECCCCEEEEec-cC----CCcEEEEEECC-CCCCEEEEEeC-----------------CCEEEEEeCCCCCc
Confidence            4445899998654444432 11    14578899999 476 6554432                 45677888764   


Q ss_pred             -CceEEeecCCCCcceeEEec-CCCEEEEEEcCCCeEEEEEccC
Q 019290          191 -KNVTVMYNGLSFPNGVALSN-NNSFLLLAESATLKILRFWLQG  232 (343)
Q Consensus       191 -~~~~~~~~~~~~~~~i~~~~-d~~~lyv~~~~~~~i~~~~~~~  232 (343)
                       +..............+++++ ++..++.+ ..++.|..|++..
T Consensus       240 ~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~-~~d~~i~iwd~~~  282 (383)
T 3ei3_B          240 KNSYIAEMPHEKPVNAAYFNPTDSTKLLTT-DQRNEIRVYSSYD  282 (383)
T ss_dssp             TTCEEEEEECSSCEEEEEECTTTSCEEEEE-ESSSEEEEEETTB
T ss_pred             ccceEEEecCCCceEEEEEcCCCCCEEEEE-cCCCcEEEEECCC
Confidence             33333333445678899999 88866655 4578999999875

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=98.69  E-value=9.8e-06  Score=73.36  Aligned_cols=239  Identities=9%  Similarity=-0.058  Sum_probs=134.0

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCC-------eEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCC-
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSG-------WTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVT-  107 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~-  107 (343)
                      ...++++++  +.++++..++.|..|+..+.+       ...+.                    .....+..+.+.+ + 
T Consensus        18 ~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~--------------------~h~~~v~~~~~~~-~~   74 (397)
T 1sq9_A           18 DIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHF--------------------VHKSGLHHVDVLQ-AI   74 (397)
T ss_dssp             CEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEE--------------------CCTTCEEEEEEEE-EE
T ss_pred             CeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEe--------------------cCCCcEEEEEEec-cc
Confidence            467888988  668888899999999987765       22221                    1223467888888 4 


Q ss_pred             ---C----eEEEEeCCCeEEEEeCCCCe------EEEcccccCCC-CccCcceeEEe----CCCCeE-EEEeCCcccccc
Q 019290          108 ---C----DLYIADAYFGLMVVGPNGGQ------AQQLASSAGGI-PFRFTNDLDID----PNTGIV-YFTDSSIYFQRR  168 (343)
Q Consensus       108 ---~----~l~v~~~~~gi~~~d~~~~~------~~~~~~~~~~~-~~~~~~~i~~d----~~dg~l-~v~~~~~~~~~~  168 (343)
                         +    .|+.+.....|..++.++++      ...+. ..... ....+..+++.    + ++.. +++...      
T Consensus        75 ~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~-~~~~~l~~~~~------  146 (397)
T 1sq9_A           75 ERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLD-LLDSDMKKHSFWALKWGASNDR-LLSHRLVATDV------  146 (397)
T ss_dssp             ETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEEC-CSCTTGGGSCEEEEEEECCC-----CEEEEEEET------
T ss_pred             ccCCccccEEEEEcCCCCEEEEEccCCcccccccceeec-ccccccCCCcEEEEEEeeccCC-CCceEEEEEeC------
Confidence               5    45555433448888877665      33331 11100 02457889999    8 4665 554322      


Q ss_pred             cceeeeeecCCCceEEEEeCCC------Cc-eE-----Eee-------cCCCCcceeEEecCCCEEEEEEcCCCeEEEEE
Q 019290          169 QYFMSIATGDRSGRLLKYDPLK------KN-VT-----VMY-------NGLSFPNGVALSNNNSFLLLAESATLKILRFW  229 (343)
Q Consensus       169 ~~~~~~~~~~~~~~v~~~d~~~------~~-~~-----~~~-------~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~  229 (343)
                                 .+.|..||..+      ++ ..     .+.       ........+++++++  ++++...++.|..|+
T Consensus       147 -----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d  213 (397)
T 1sq9_A          147 -----------KGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISE  213 (397)
T ss_dssp             -----------TSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEE
T ss_pred             -----------CCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEE
Confidence                       34566666554      22 22     221       123457889999988  455556789999999


Q ss_pred             ccCccccccceeeec---C---CCCCCceeeCCCCCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECC-CCC
Q 019290          230 LQGERTTYTPQLFAE---M---PRFPDNIKSDSKGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDV-NGN  302 (343)
Q Consensus       230 ~~~~~~~~~~~~~~~---~---~~~p~~i~~d~~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~  302 (343)
                      +.....   ...+..   .   ......++++++|+++++....+.                     .+.|..+|. +++
T Consensus       214 ~~~~~~---~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~---------------------~g~i~i~d~~~~~  269 (397)
T 1sq9_A          214 LSTLRP---LYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNS---------------------FGCITLYETEFGE  269 (397)
T ss_dssp             TTTTEE---EEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETT---------------------EEEEEEEETTTCC
T ss_pred             CCCCce---eEEEeccccccccCCccceEEECCCCCEEEEEecCCC---------------------CceEEEEECCCCc
Confidence            865221   122211   1   223455778999987776655100                     036777775 566


Q ss_pred             EEEEeeCCCC---------CccCCceeEEEe-CCEEEEecCCCCeEEEEc
Q 019290          303 VVDVLDGNEG---------NTLNSVSEVQEY-GEYLYTGSSVQPYVVVIK  342 (343)
Q Consensus       303 ~~~~~~~~~~---------~~~~~~~~~~~~-~g~l~i~~~~~~~i~~~~  342 (343)
                      .+..+..+..         .....+..+... +++++++......|.+++
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd  319 (397)
T 1sq9_A          270 RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD  319 (397)
T ss_dssp             EEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred             ccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence            6666543110         012334444443 455555555556666664

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=98.69  E-value=3.6e-06  Score=74.54  Aligned_cols=185  Identities=10%  Similarity=-0.055  Sum_probs=113.4

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCC----eEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCC-eE
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSG----WTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTC-DL  110 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~-~l  110 (343)
                      ...++++.++|+.++++..++.|..|+..++.    ...+.                    .....+..+++++++. .|
T Consensus        13 ~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~--------------------~~~~~v~~~~~~~~~~~~l   72 (342)
T 1yfq_A           13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSL--------------------RYKHPLLCCNFIDNTDLQI   72 (342)
T ss_dssp             CEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEE--------------------ECSSCEEEEEEEESSSEEE
T ss_pred             cEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeee--------------------ecCCceEEEEECCCCCcEE
Confidence            46799999999988888899999999987655    22221                    1123467889998444 46


Q ss_pred             EEEeCCCeEEEEeC-CCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCC
Q 019290          111 YIADAYFGLMVVGP-NGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPL  189 (343)
Q Consensus       111 ~v~~~~~gi~~~d~-~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~  189 (343)
                      +.+.....|..+|. ++++...+...   .....+..+++.+ ++.++.+..                  .+.|..+|..
T Consensus        73 ~~~~~dg~i~~wd~~~~~~~~~~~~~---~~~~~v~~l~~~~-~~~l~s~~~------------------d~~i~iwd~~  130 (342)
T 1yfq_A           73 YVGTVQGEILKVDLIGSPSFQALTNN---EANLGICRICKYG-DDKLIAASW------------------DGLIEVIDPR  130 (342)
T ss_dssp             EEEETTSCEEEECSSSSSSEEECBSC---CCCSCEEEEEEET-TTEEEEEET------------------TSEEEEECHH
T ss_pred             EEEcCCCeEEEEEeccCCceEecccc---CCCCceEEEEeCC-CCEEEEEcC------------------CCeEEEEccc
Confidence            66654444999999 88876554321   0123577888888 456655433                  3567777765


Q ss_pred             C---------CceEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC-ccccccceeeecCCCCCCceeeCC-CC
Q 019290          190 K---------KNVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQG-ERTTYTPQLFAEMPRFPDNIKSDS-KG  258 (343)
Q Consensus       190 ~---------~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~p~~i~~d~-~G  258 (343)
                      +         ++.............+++++++  ++++ ..++.|..|++.. ... ...............+++.+ +|
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--l~~~-~~d~~i~i~d~~~~~~~-~~~~~~~~~~~~i~~i~~~~~~~  206 (342)
T 1yfq_A          131 NYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR--LIVG-MNNSQVQWFRLPLCEDD-NGTIEESGLKYQIRDVALLPKEQ  206 (342)
T ss_dssp             HHTTBCEEEEESCSSSSSSCCCEEEEEECSSE--EEEE-ESTTEEEEEESSCCTTC-CCEEEECSCSSCEEEEEECSGGG
T ss_pred             ccccccccccCCeeeEEeeCCceEEEEecCCc--EEEE-eCCCeEEEEECCccccc-cceeeecCCCCceeEEEECCCCC
Confidence            3         3221112223446778888765  4444 5678999999865 221 11111111222345677888 88


Q ss_pred             CEEEEecc
Q 019290          259 EFWIAMNS  266 (343)
Q Consensus       259 ~lwi~~~~  266 (343)
                      +++++...
T Consensus       207 ~~l~~~~~  214 (342)
T 1yfq_A          207 EGYACSSI  214 (342)
T ss_dssp             CEEEEEET
T ss_pred             CEEEEEec
Confidence            77666554

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=98.68  E-value=7e-06  Score=76.24  Aligned_cols=145  Identities=11%  Similarity=0.066  Sum_probs=84.4

Q ss_pred             CeeeEEEeCCCCeEEEEeCCCe-EEEEeCC--CCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceee
Q 019290           97 RPLGIKFNPVTCDLYIADAYFG-LMVVGPN--GGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMS  173 (343)
Q Consensus        97 ~p~gi~~~~~~~~l~v~~~~~g-i~~~d~~--~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~  173 (343)
                      .+..+++++++..|+++...+| |..++.+  +++.........  ....+..+++.+ ++...++...           
T Consensus       104 ~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~--~~~~v~~~~~sp-~~~~l~~~~~-----------  169 (450)
T 2vdu_B          104 YIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFC--FSKRPNAISIAE-DDTTVIIADK-----------  169 (450)
T ss_dssp             CEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEE--CSSCEEEEEECT-TSSEEEEEET-----------
T ss_pred             ceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeeccc--CCCCceEEEEcC-CCCEEEEEeC-----------
Confidence            4678999984444444433344 7788877  554433222110  113578899999 4665443322           


Q ss_pred             eeecCCCceEEEEeCCCCceE-----EeecCCCCcceeEEecC---CCEEEEEEcCCCeEEEEEccCccccccceeee-c
Q 019290          174 IATGDRSGRLLKYDPLKKNVT-----VMYNGLSFPNGVALSNN---NSFLLLAESATLKILRFWLQGERTTYTPQLFA-E  244 (343)
Q Consensus       174 ~~~~~~~~~v~~~d~~~~~~~-----~~~~~~~~~~~i~~~~d---~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~-~  244 (343)
                            .+.++.++..+++..     .+.........++++++   ++.+ ++...++.|..|++.....   ...+. .
T Consensus       170 ------~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l-~s~~~d~~i~vwd~~~~~~---~~~~~~~  239 (450)
T 2vdu_B          170 ------FGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFI-ITSDRDEHIKISHYPQCFI---VDKWLFG  239 (450)
T ss_dssp             ------TSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEE-EEEETTSCEEEEEESCTTC---EEEECCC
T ss_pred             ------CCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEE-EEEcCCCcEEEEECCCCce---eeeeecC
Confidence                  467888887655432     22233345788999998   6555 4555678999999865221   12221 1


Q ss_pred             CCCCCCceeeCCCCCEEEEecc
Q 019290          245 MPRFPDNIKSDSKGEFWIAMNS  266 (343)
Q Consensus       245 ~~~~p~~i~~d~~G~lwi~~~~  266 (343)
                      ..+....+++. +|+++++...
T Consensus       240 h~~~v~~~~~s-d~~~l~s~~~  260 (450)
T 2vdu_B          240 HKHFVSSICCG-KDYLLLSAGG  260 (450)
T ss_dssp             CSSCEEEEEEC-STTEEEEEES
T ss_pred             CCCceEEEEEC-CCCEEEEEeC
Confidence            22234567788 8887776655

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=98.67  E-value=6.3e-06  Score=73.26  Aligned_cols=191  Identities=9%  Similarity=-0.005  Sum_probs=111.5

Q ss_pred             CCceEEEcCC---CCeeEEEecCCEEEEEEcCCCC--eEEeeecCCCccccccCCCCCcccCCCcCCeeeEE------Ee
Q 019290           36 GPESLAFDCN---GEGPYVGVSDGRILKWKAANSG--WTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIK------FN  104 (343)
Q Consensus        36 ~p~~l~~d~~---g~~l~~~~~~g~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~------~~  104 (343)
                      ...++++.++   |+.++++..++.|..||..+++  ...+.                    ........+.      ++
T Consensus        67 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--------------------~~~~~v~~~~~~~~~~~s  126 (357)
T 3i2n_A           67 PIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVK--------------------GHKEIINAIDGIGGLGIG  126 (357)
T ss_dssp             CEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEEC--------------------CCSSCEEEEEEESGGGCC
T ss_pred             cEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEE--------------------ecccceEEEeeccccccC
Confidence            4678899998   6878888899999999987654  22221                    1122344553      35


Q ss_pred             CCCCeEEEEeCCCeEEEEeCCCCe--EEEcccccCCCCccCcceeE----EeCCCCeEEEEeCCcccccccceeeeeecC
Q 019290          105 PVTCDLYIADAYFGLMVVGPNGGQ--AQQLASSAGGIPFRFTNDLD----IDPNTGIVYFTDSSIYFQRRQYFMSIATGD  178 (343)
Q Consensus       105 ~~~~~l~v~~~~~gi~~~d~~~~~--~~~~~~~~~~~~~~~~~~i~----~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~  178 (343)
                      +++..|+.+.....|..+|.++++  ...+ ....+.....+..++    +.+ ++.+.++...                
T Consensus       127 ~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~-~~~~l~~~~~----------------  188 (357)
T 3i2n_A          127 EGAPEIVTGSRDGTVKVWDPRQKDDPVANM-EPVQGENKRDCWTVAFGNAYNQ-EERVVCAGYD----------------  188 (357)
T ss_dssp             -CCCEEEEEETTSCEEEECTTSCSSCSEEE-CCCTTSCCCCEEEEEEECCCC--CCCEEEEEET----------------
T ss_pred             CCccEEEEEeCCCeEEEEeCCCCCCcceec-cccCCCCCCceEEEEEEeccCC-CCCEEEEEcc----------------
Confidence            534455555433449999988764  2222 221221123455666    456 4665554332                


Q ss_pred             CCceEEEEeCCCCceEEeecCCCCcceeEEec---CCCEEEEEEcCCCeEEEEEccCccccccceee--ecCCCCCCcee
Q 019290          179 RSGRLLKYDPLKKNVTVMYNGLSFPNGVALSN---NNSFLLLAESATLKILRFWLQGERTTYTPQLF--AEMPRFPDNIK  253 (343)
Q Consensus       179 ~~~~v~~~d~~~~~~~~~~~~~~~~~~i~~~~---d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~p~~i~  253 (343)
                       .+.|..||..+++.............+++++   ++..++++ ..++.|..|++............  .........++
T Consensus       189 -d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~  266 (357)
T 3i2n_A          189 -NGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVAT-SLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVR  266 (357)
T ss_dssp             -TSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEE-ESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEE
T ss_pred             -CCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEE-CCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEE
Confidence             4678999988777655444445678899998   78766655 56789999998653221111110  01122234567


Q ss_pred             eCCCCC-EEEEecc
Q 019290          254 SDSKGE-FWIAMNS  266 (343)
Q Consensus       254 ~d~~G~-lwi~~~~  266 (343)
                      +.++|. ++++...
T Consensus       267 ~~~~~~~~l~~~~~  280 (357)
T 3i2n_A          267 HLPQNRELFLTAGG  280 (357)
T ss_dssp             EETTEEEEEEEEET
T ss_pred             ECCCCCcEEEEEeC
Confidence            788887 4444433

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=98.66  E-value=3e-05  Score=70.11  Aligned_cols=169  Identities=15%  Similarity=0.107  Sum_probs=102.3

Q ss_pred             CCceEEEcC-CCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCC-eEEEE
Q 019290           36 GPESLAFDC-NGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTC-DLYIA  113 (343)
Q Consensus        36 ~p~~l~~d~-~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~-~l~v~  113 (343)
                      ...++++.+ +|+.++++..+|.|..||..++.............  .  +  ..........+..+++.+.++ .+..+
T Consensus        45 ~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~--~--~--~~~~~~~~~~v~~~~~~~~~~~~l~s~  118 (408)
T 4a11_B           45 GINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCS--I--G--RDHPDVHRYSVETVQWYPHDTGMFTSS  118 (408)
T ss_dssp             CEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEE--E--C--TTCTTCCSSCEEEEEECTTCTTCEEEE
T ss_pred             cEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEecccccc--c--c--ccccccCCCcEEEEEEccCCCcEEEEE
Confidence            567999999 99988888899999999987654221110000000  0  0  000011233567889987344 45555


Q ss_pred             eCCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCC--CCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCC
Q 019290          114 DAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPN--TGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKK  191 (343)
Q Consensus       114 ~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~--dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~  191 (343)
                      .....|..+|.++++........     ..+..+.+.+.  ++.+.++...                 .+.|..+|..++
T Consensus       119 ~~d~~i~iwd~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~v~~~d~~~~  176 (408)
T 4a11_B          119 SFDKTLKVWDTNTLQTADVFNFE-----ETVYSHHMSPVSTKHCLVAVGTR-----------------GPKVQLCDLKSG  176 (408)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECS-----SCEEEEEECSSCSSCCEEEEEES-----------------SSSEEEEESSSS
T ss_pred             eCCCeEEEeeCCCCccceeccCC-----CceeeeEeecCCCCCcEEEEEcC-----------------CCeEEEEeCCCc
Confidence            44445999999887755443211     23455565542  1334443322                 456888888766


Q ss_pred             ceE-EeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290          192 NVT-VMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQG  232 (343)
Q Consensus       192 ~~~-~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~  232 (343)
                      +.. .+.........+++++++..++++...++.|..|++..
T Consensus       177 ~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~  218 (408)
T 4a11_B          177 SCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRR  218 (408)
T ss_dssp             CCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTC
T ss_pred             ceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCC
Confidence            543 33333455788999999987666667789999999864

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=98.66  E-value=9.9e-06  Score=78.98  Aligned_cols=227  Identities=11%  Similarity=0.012  Sum_probs=128.0

Q ss_pred             CCCCe-eEEE-ecCCEEEEEEcC--C-CCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCC--
Q 019290           44 CNGEG-PYVG-VSDGRILKWKAA--N-SGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAY--  116 (343)
Q Consensus        44 ~~g~~-l~~~-~~~g~i~~~d~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~--  116 (343)
                      |||+. +.+. ..+.+|+.++..  + ++...+.....               ........+++++++++.|+++...  
T Consensus        88 PDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~---------------~~~~~~~~~~~~spDg~~l~~~~~~~~  152 (662)
T 3azo_A           88 PAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSA---------------VGGGLRWADPVLLPERGEVWCMAEEFT  152 (662)
T ss_dssp             SSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCC---------------STTCEEEEEEEEETTTTEEEEEEEEEC
T ss_pred             cCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCcc---------------CCCCccccCcEECCCCCEEEEEEeccc
Confidence            88886 5443 346789999876  3 55444421000               0012245678899955667766432  


Q ss_pred             --------CeEEEEeCCC------CeEEEcc-cccCCCCccCcceeEEeCCCCe-EEEEeCCc-ccccccceeeeeecCC
Q 019290          117 --------FGLMVVGPNG------GQAQQLA-SSAGGIPFRFTNDLDIDPNTGI-VYFTDSSI-YFQRRQYFMSIATGDR  179 (343)
Q Consensus       117 --------~gi~~~d~~~------~~~~~~~-~~~~~~~~~~~~~i~~d~~dg~-l~v~~~~~-~~~~~~~~~~~~~~~~  179 (343)
                              ..|+.+|.++      ++.+.+. ..     ......+++.+ ||+ |+++.... ..           .-.
T Consensus       153 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~Sp-DG~~la~~~~~~~~~-----------~~~  215 (662)
T 3azo_A          153 GEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDA-----HRFVTGPRLSP-DGRQAVWLAWDHPRM-----------PWE  215 (662)
T ss_dssp             SSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSC-----SSEECCCEECT-TSSEEEEEEECTTCC-----------TTT
T ss_pred             CCCCCCceeEEEEEECCCCccccCCceeEEEecC-----CCcccCceECC-CCCEEEEEECCCCCC-----------CCC
Confidence                    2499999988      6666553 21     13456788999 575 54433210 00           001


Q ss_pred             CceEEEEeCC-CC---ceEEeecC-CCCcceeEEecCCCEEEEEEcCCC--eEEEEEccCccccccceeeecCC-C--C-
Q 019290          180 SGRLLKYDPL-KK---NVTVMYNG-LSFPNGVALSNNNSFLLLAESATL--KILRFWLQGERTTYTPQLFAEMP-R--F-  248 (343)
Q Consensus       180 ~~~v~~~d~~-~~---~~~~~~~~-~~~~~~i~~~~d~~~lyv~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~-~--~-  248 (343)
                      ...|+.+|.+ ++   +.+.+... ......+++++||+ +|++...++  .|+++++++    ++.+.+.... .  . 
T Consensus       216 ~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~-l~~~~~~~~~~~l~~~~~~~----~~~~~l~~~~~~~~~p  290 (662)
T 3azo_A          216 GTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGS-LIVATDRTGWWNLHRVDPAT----GAATQLCRREEEFAGP  290 (662)
T ss_dssp             CEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSC-EEEEECTTSSCEEEEECTTT----CCEEESSCCSSBSSCC
T ss_pred             CcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCe-EEEEECCCCCeEEEEEECCC----CceeecccccccccCc
Confidence            2468999887 46   55555443 34567788999999 666655555  899988754    2222222111 0  0 


Q ss_pred             -----CCceeeCCCCCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECCCCCEEEEeeCCCCCccCCceeE-E
Q 019290          249 -----PDNIKSDSKGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEGNTLNSVSEV-Q  322 (343)
Q Consensus       249 -----p~~i~~d~~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~~~~~~~~~~~-~  322 (343)
                           ...+++.++|+++++... +                      ...|+.+|.++.....+..+.+    .+..+ .
T Consensus       291 ~w~~~~~~~~~~~~~~~~~~~~~-~----------------------~~~l~~~d~~~~~~~~l~~~~~----~~~~~~s  343 (662)
T 3azo_A          291 LWTPGMRWFAPLANGLIAVVHGK-G----------------------AAVLGILDPESGELVDAAGPWT----EWAATLT  343 (662)
T ss_dssp             CCSTTCCSEEECTTSCEEEEEBS-S----------------------SCEEEEEETTTTEEEECCSSCC----EEEEEEE
T ss_pred             cccccCceEeEeCCCEEEEEEEc-C----------------------ccEEEEEECCCCcEEEecCCCC----eEEEEEe
Confidence                 234566678888777654 2                      2377888877655555543322    22333 4


Q ss_pred             EeCCEEEEecCC
Q 019290          323 EYGEYLYTGSSV  334 (343)
Q Consensus       323 ~~~g~l~i~~~~  334 (343)
                      .+++.+++....
T Consensus       344 ~~~~~~~~~~~~  355 (662)
T 3azo_A          344 VSGTRAVGVAAS  355 (662)
T ss_dssp             EETTEEEEEEEE
T ss_pred             cCCCEEEEEEcC
Confidence            456665554433

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=98.66  E-value=3.5e-05  Score=75.72  Aligned_cols=188  Identities=13%  Similarity=0.091  Sum_probs=117.7

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      ...++++.++|+.+.++..++.|..||..++.......                   .....+..+++++++..|..+..
T Consensus       432 ~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~-------------------~h~~~v~~~~~s~~~~~l~s~s~  492 (694)
T 3dm0_A          432 FVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFV-------------------GHTKDVLSVAFSLDNRQIVSASR  492 (694)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-------------------CCSSCEEEEEECTTSSCEEEEET
T ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEe-------------------CCCCCEEEEEEeCCCCEEEEEeC
Confidence            35689999999988889999999999987764332211                   12234678999984445666644


Q ss_pred             CCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCC--eEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCce
Q 019290          116 YFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTG--IVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNV  193 (343)
Q Consensus       116 ~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg--~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~  193 (343)
                      ...|..+|..+.....+.....+ ....+..+++.+. +  .+.++...                 .+.|..+|..+++.
T Consensus       493 D~~i~iwd~~~~~~~~~~~~~~~-h~~~v~~~~~~~~-~~~~~l~s~s~-----------------d~~v~vwd~~~~~~  553 (694)
T 3dm0_A          493 DRTIKLWNTLGECKYTISEGGEG-HRDWVSCVRFSPN-TLQPTIVSASW-----------------DKTVKVWNLSNCKL  553 (694)
T ss_dssp             TSCEEEECTTSCEEEEECSSTTS-CSSCEEEEEECSC-SSSCEEEEEET-----------------TSCEEEEETTTCCE
T ss_pred             CCEEEEEECCCCcceeeccCCCC-CCCcEEEEEEeCC-CCcceEEEEeC-----------------CCeEEEEECCCCcE
Confidence            34488899865543333222111 1245778888883 4  34443322                 45688888876665


Q ss_pred             EE-eecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEecc
Q 019290          194 TV-MYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNS  266 (343)
Q Consensus       194 ~~-~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~~  266 (343)
                      .. +..+......++++++++.+ ++...++.|..|++.....   ...+ ........+++++++.+.++...
T Consensus       554 ~~~~~~h~~~v~~v~~spdg~~l-~sg~~Dg~i~iwd~~~~~~---~~~~-~~~~~v~~~~~sp~~~~l~~~~~  622 (694)
T 3dm0_A          554 RSTLAGHTGYVSTVAVSPDGSLC-ASGGKDGVVLLWDLAEGKK---LYSL-EANSVIHALCFSPNRYWLCAATE  622 (694)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEE-EEEETTSBCEEEETTTTEE---EECC-BCSSCEEEEEECSSSSEEEEEET
T ss_pred             EEEEcCCCCCEEEEEEeCCCCEE-EEEeCCCeEEEEECCCCce---EEEe-cCCCcEEEEEEcCCCcEEEEEcC
Confidence            43 33334557889999999855 4555688999999865221   1111 12223445778888877776554

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=98.65  E-value=3.5e-05  Score=68.08  Aligned_cols=190  Identities=10%  Similarity=0.038  Sum_probs=112.5

Q ss_pred             CCceEEEcCCC-CeeEEEecCCEEEEEEcCCCCeE--EeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEE
Q 019290           36 GPESLAFDCNG-EGPYVGVSDGRILKWKAANSGWT--EFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYI  112 (343)
Q Consensus        36 ~p~~l~~d~~g-~~l~~~~~~g~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v  112 (343)
                      ...++++.+++ +.+.++..++.|..|+..+....  ...                .........+..+++.+++..|..
T Consensus        19 ~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~----------------~~~~~h~~~v~~~~~s~dg~~l~s   82 (319)
T 3frx_A           19 WVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPV----------------RSFKGHSHIVQDCTLTADGAYALS   82 (319)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEE----------------EEEECCSSCEEEEEECTTSSEEEE
T ss_pred             eEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccc----------------eEEeCCcccEEEEEECCCCCEEEE
Confidence            46788999864 77788889999999986532111  000                000112234567889984444555


Q ss_pred             EeCCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCc
Q 019290          113 ADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKN  192 (343)
Q Consensus       113 ~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~  192 (343)
                      +.....|..+|.++++........    ...+..+++.+ ++.+.++...                 .+.|..+|..+..
T Consensus        83 ~s~D~~v~~wd~~~~~~~~~~~~h----~~~v~~~~~~~-~~~~l~s~s~-----------------D~~i~vwd~~~~~  140 (319)
T 3frx_A           83 ASWDKTLRLWDVATGETYQRFVGH----KSDVMSVDIDK-KASMIISGSR-----------------DKTIKVWTIKGQC  140 (319)
T ss_dssp             EETTSEEEEEETTTTEEEEEEECC----SSCEEEEEECT-TSCEEEEEET-----------------TSCEEEEETTSCE
T ss_pred             EeCCCEEEEEECCCCCeeEEEccC----CCcEEEEEEcC-CCCEEEEEeC-----------------CCeEEEEECCCCe
Confidence            543344899999988754332221    13478899999 5777765433                 4567777876555


Q ss_pred             eEEeecCCCCcceeEEecCCC-----EEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEecc
Q 019290          193 VTVMYNGLSFPNGVALSNNNS-----FLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNS  266 (343)
Q Consensus       193 ~~~~~~~~~~~~~i~~~~d~~-----~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~~  266 (343)
                      ...+.........+++.+...     .++++...++.|..|++.....   ...+.........++++++|++.++...
T Consensus       141 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---~~~~~~h~~~v~~~~~sp~g~~l~s~~~  216 (319)
T 3frx_A          141 LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI---EADFIGHNSNINTLTASPDGTLIASAGK  216 (319)
T ss_dssp             EEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEE---EEEECCCCSCEEEEEECTTSSEEEEEET
T ss_pred             EEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchh---heeecCCCCcEEEEEEcCCCCEEEEEeC
Confidence            544444444456677766432     2455666788999999864211   1112111222345778999987776654

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=98.65  E-value=5.9e-05  Score=67.73  Aligned_cols=189  Identities=9%  Similarity=0.096  Sum_probs=110.6

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      ...++++.++|+.+.++..++.|..||..++.......                   .....+..+++.+ ++..+++..
T Consensus        66 ~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~-------------------~~~~~v~~~~~sp-~g~~lasg~  125 (354)
T 2pbi_B           66 KVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVT-------------------MPCTWVMACAYAP-SGCAIACGG  125 (354)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-------------------CSSSCCCEEEECT-TSSEEEEES
T ss_pred             eEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEe-------------------cCCCCEEEEEECC-CCCEEEEee
Confidence            46789999999988899999999999987655433211                   1122356788998 555444434


Q ss_pred             CCe-EEEEeCCCCeEEEccccc--CCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCc
Q 019290          116 YFG-LMVVGPNGGQAQQLASSA--GGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKN  192 (343)
Q Consensus       116 ~~g-i~~~d~~~~~~~~~~~~~--~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~  192 (343)
                      .++ +..++.............  .......+..+++.+ ++...++...                 .+.|..+|..+++
T Consensus       126 ~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~t~s~-----------------D~~v~lwd~~~~~  187 (354)
T 2pbi_B          126 LDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTN-SDMQILTASG-----------------DGTCALWDVESGQ  187 (354)
T ss_dssp             TTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECS-SSSEEEEEET-----------------TSEEEEEETTTCC
T ss_pred             CCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeC-CCCEEEEEeC-----------------CCcEEEEeCCCCe
Confidence            444 666765432110000000  000123467788888 4655554332                 4678888987776


Q ss_pred             eEE-eecCCCCcceeEEec--CCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEecc
Q 019290          193 VTV-MYNGLSFPNGVALSN--NNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNS  266 (343)
Q Consensus       193 ~~~-~~~~~~~~~~i~~~~--d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~~  266 (343)
                      ... +.........+++.+  ++.. +++...++.|..|++.....   ...+.........+++.++|+++++...
T Consensus       188 ~~~~~~~h~~~v~~~~~~~~~~g~~-l~sgs~Dg~v~~wd~~~~~~---~~~~~~h~~~v~~v~~~p~~~~l~s~s~  260 (354)
T 2pbi_B          188 LLQSFHGHGADVLCLDLAPSETGNT-FVSGGCDKKAMVWDMRSGQC---VQAFETHESDVNSVRYYPSGDAFASGSD  260 (354)
T ss_dssp             EEEEEECCSSCEEEEEECCCSSCCE-EEEEETTSCEEEEETTTCCE---EEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             EEEEEcCCCCCeEEEEEEeCCCCCE-EEEEeCCCeEEEEECCCCcE---EEEecCCCCCeEEEEEeCCCCEEEEEeC
Confidence            543 333334456677766  3454 44556788999999865221   1222112222445778888887776654

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=98.65  E-value=6.2e-06  Score=74.57  Aligned_cols=189  Identities=8%  Similarity=-0.002  Sum_probs=114.3

Q ss_pred             CceEEEcCCCCeeEEEe--cCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEe
Q 019290           37 PESLAFDCNGEGPYVGV--SDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIAD  114 (343)
Q Consensus        37 p~~l~~d~~g~~l~~~~--~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~  114 (343)
                      ...++++|||+.+.+++  .++.|..||..+++...-..                    ....+.++++++ ++.++++.
T Consensus       136 ~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~--------------------~~~~V~~v~fsp-dg~~l~s~  194 (365)
T 4h5i_A          136 TKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE--------------------TRGEVKDLHFST-DGKVVAYI  194 (365)
T ss_dssp             EEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE--------------------CSSCCCEEEECT-TSSEEEEE
T ss_pred             EEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC--------------------CCCceEEEEEcc-CCceEEec
Confidence            45799999999766544  56889999998765432211                    112367899999 66655554


Q ss_pred             CCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceE
Q 019290          115 AYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVT  194 (343)
Q Consensus       115 ~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~  194 (343)
                      ..+++.+++..+++....... .. ....+..+++.+ ++...++....             ......++.++.......
T Consensus       195 s~~~~~~~~~~~~~~~~~~~~-~~-~~~~v~~v~fsp-dg~~l~~~s~d-------------~~~~~~i~~~~~~~~~~~  258 (365)
T 4h5i_A          195 TGSSLEVISTVTGSCIARKTD-FD-KNWSLSKINFIA-DDTVLIAASLK-------------KGKGIVLTKISIKSGNTS  258 (365)
T ss_dssp             CSSCEEEEETTTCCEEEEECC-CC-TTEEEEEEEEEE-TTEEEEEEEES-------------SSCCEEEEEEEEETTEEE
T ss_pred             cceeEEEEEeccCcceeeeec-CC-CCCCEEEEEEcC-CCCEEEEEecC-------------CcceeEEeecccccceec
Confidence            567788888776654322111 11 123467889999 58877654321             011223555665433322


Q ss_pred             -----EeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeec-CCCCCCceeeCCCCCEEEEecc
Q 019290          195 -----VMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAE-MPRFPDNIKSDSKGEFWIAMNS  266 (343)
Q Consensus       195 -----~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~G~lwi~~~~  266 (343)
                           .+.........++++||++.|. +...++.|..|++....   ....+.. -.+....+++.|||++.++...
T Consensus       259 ~~~~~~~~~~~~~V~~~~~Spdg~~la-sgs~D~~V~iwd~~~~~---~~~~~~~gH~~~V~~v~fSpdg~~laS~S~  332 (365)
T 4h5i_A          259 VLRSKQVTNRFKGITSMDVDMKGELAV-LASNDNSIALVKLKDLS---MSKIFKQAHSFAITEVTISPDSTYVASVSA  332 (365)
T ss_dssp             EEEEEEEESSCSCEEEEEECTTSCEEE-EEETTSCEEEEETTTTE---EEEEETTSSSSCEEEEEECTTSCEEEEEET
T ss_pred             ceeeeeecCCCCCeEeEEECCCCCceE-EEcCCCEEEEEECCCCc---EEEEecCcccCCEEEEEECCCCCEEEEEeC
Confidence                 2233344567899999998655 44567899999986421   1122211 1222455789999998887665

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=98.65  E-value=3.8e-05  Score=70.06  Aligned_cols=191  Identities=7%  Similarity=-0.054  Sum_probs=119.6

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      ...++.+  +++.++++..++.|..||...........                  ......+.++.+++++..|.++..
T Consensus       178 ~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~------------------~~~~~~v~~~~~~~~~~~l~s~~~  237 (401)
T 4aez_A          178 RVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTL------------------QGHSSEVCGLAWRSDGLQLASGGN  237 (401)
T ss_dssp             CEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEE------------------ECCSSCEEEEEECTTSSEEEEEET
T ss_pred             ceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEE------------------cCCCCCeeEEEEcCCCCEEEEEeC
Confidence            3456666  55678888899999999987432211110                  122335678999984445666643


Q ss_pred             CCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEE
Q 019290          116 YFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTV  195 (343)
Q Consensus       116 ~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~  195 (343)
                      ...|..+|.++++........    ...+..+++.+.+..++++..+               ...+.|..||..+++...
T Consensus       238 d~~v~iwd~~~~~~~~~~~~~----~~~v~~~~~~p~~~~ll~~~~g---------------s~d~~i~i~d~~~~~~~~  298 (401)
T 4aez_A          238 DNVVQIWDARSSIPKFTKTNH----NAAVKAVAWCPWQSNLLATGGG---------------TMDKQIHFWNAATGARVN  298 (401)
T ss_dssp             TSCEEEEETTCSSEEEEECCC----SSCCCEEEECTTSTTEEEEECC---------------TTTCEEEEEETTTCCEEE
T ss_pred             CCeEEEccCCCCCccEEecCC----cceEEEEEECCCCCCEEEEecC---------------CCCCEEEEEECCCCCEEE
Confidence            345999999876544322211    2357889999843456664421               115678899988776654


Q ss_pred             eecCCCCcceeEEecCCCEEEEE-EcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEecc
Q 019290          196 MYNGLSFPNGVALSNNNSFLLLA-ESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNS  266 (343)
Q Consensus       196 ~~~~~~~~~~i~~~~d~~~lyv~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~~  266 (343)
                      ..........++++++++.++++ ...++.|..|++..... .....+....+....++++++|.+.++...
T Consensus       299 ~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~-~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~  369 (401)
T 4aez_A          299 TVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGL-TKQVDIPAHDTRVLYSALSPDGRILSTAAS  369 (401)
T ss_dssp             EEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEE-EEEEEEECCSSCCCEEEECTTSSEEEEECT
T ss_pred             EEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccc-eeEEEecCCCCCEEEEEECCCCCEEEEEeC
Confidence            44444567899999999977765 33678999999875322 111112122233566888999987776654

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=98.65  E-value=1.7e-05  Score=75.99  Aligned_cols=235  Identities=11%  Similarity=0.055  Sum_probs=135.7

Q ss_pred             CceEEEcC--CCCeeEEEecCCEEEEEEcCCC------CeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCC
Q 019290           37 PESLAFDC--NGEGPYVGVSDGRILKWKAANS------GWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTC  108 (343)
Q Consensus        37 p~~l~~d~--~g~~l~~~~~~g~i~~~d~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~  108 (343)
                      ..++++.+  +|+.++++..++.|..||..++      .......                 .......+..+++++++.
T Consensus        67 v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~-----------------~~~~~~~v~~~~~s~~~~  129 (615)
T 1pgu_A           67 VTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSE-----------------FQVLAGPISDISWDFEGR  129 (615)
T ss_dssp             EEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEE-----------------EECCSSCEEEEEECTTSS
T ss_pred             EEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccch-----------------hhcccccEEEEEEeCCCC
Confidence            57899999  9998888889999999988543      1111110                 011223467899998445


Q ss_pred             eEEEEeCC----CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCe-EEEEeCCcccccccceeeeeecCCCceE
Q 019290          109 DLYIADAY----FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGI-VYFTDSSIYFQRRQYFMSIATGDRSGRL  183 (343)
Q Consensus       109 ~l~v~~~~----~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v  183 (343)
                      .|.++...    ..|+.+|.. .....+ ..    ....+..+++.+ ++. ++++...                 .+.|
T Consensus       130 ~l~~~~~~~~~~~~v~~~d~~-~~~~~~-~~----~~~~v~~~~~~~-~~~~~l~~~~~-----------------d~~v  185 (615)
T 1pgu_A          130 RLCVVGEGRDNFGVFISWDSG-NSLGEV-SG----HSQRINACHLKQ-SRPMRSMTVGD-----------------DGSV  185 (615)
T ss_dssp             EEEEEECCSSCSEEEEETTTC-CEEEEC-CS----CSSCEEEEEECS-SSSCEEEEEET-----------------TTEE
T ss_pred             EEEEeccCCCCccEEEEEECC-Ccceee-ec----CCccEEEEEECC-CCCcEEEEEeC-----------------CCcE
Confidence            56655433    136677732 223322 21    123578899999 475 4443322                 4678


Q ss_pred             EEEeCCCCceEEeec-CCC---CcceeEEecC-CCEEEEEEcCCCeEEEEEccCccccccceee-e---cCCCCCCceee
Q 019290          184 LKYDPLKKNVTVMYN-GLS---FPNGVALSNN-NSFLLLAESATLKILRFWLQGERTTYTPQLF-A---EMPRFPDNIKS  254 (343)
Q Consensus       184 ~~~d~~~~~~~~~~~-~~~---~~~~i~~~~d-~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~-~---~~~~~p~~i~~  254 (343)
                      ..||..+++...... ...   ....++++++ ++.++.. ..++.|..|++.....   ...+ .   ........+++
T Consensus       186 ~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~i~vwd~~~~~~---~~~~~~~~~~~~~~v~~~~~  261 (615)
T 1pgu_A          186 VFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITV-GSDRKISCFDGKSGEF---LKYIEDDQEPVQGGIFALSW  261 (615)
T ss_dssp             EEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEE-ETTCCEEEEETTTCCE---EEECCBTTBCCCSCEEEEEE
T ss_pred             EEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEE-eCCCeEEEEECCCCCE---eEEecccccccCCceEEEEE
Confidence            888887666543332 333   5678999999 8766554 4578999999865221   1222 1   11122344667


Q ss_pred             CCCCCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECCC-CCEEEEeeCCCCCccCCceeEE-EeCCEEEEec
Q 019290          255 DSKGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVN-GNVVDVLDGNEGNTLNSVSEVQ-EYGEYLYTGS  332 (343)
Q Consensus       255 d~~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~~~~~~-~~~g~l~i~~  332 (343)
                      . +|+++++...                        .+.+..+|.+ ++....+..+.......+..+. .+++.|..++
T Consensus       262 ~-~~~~l~~~~~------------------------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  316 (615)
T 1pgu_A          262 L-DSQKFATVGA------------------------DATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLS  316 (615)
T ss_dssp             S-SSSEEEEEET------------------------TSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEE
T ss_pred             c-CCCEEEEEcC------------------------CCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEE
Confidence            7 8877666554                        3467777864 6666666544222222333333 3455555554


Q ss_pred             CCCCeEEEEc
Q 019290          333 SVQPYVVVIK  342 (343)
Q Consensus       333 ~~~~~i~~~~  342 (343)
                      . ...|.+++
T Consensus       317 ~-~g~i~~~d  325 (615)
T 1pgu_A          317 L-DGTLNFYE  325 (615)
T ss_dssp             T-TSCEEEEE
T ss_pred             C-CCCEEEEE
Confidence            4 44555554

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=98.64  E-value=2.8e-05  Score=69.16  Aligned_cols=240  Identities=10%  Similarity=-0.037  Sum_probs=137.9

Q ss_pred             CCceEEEcCC----CCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeC-CCCeE
Q 019290           36 GPESLAFDCN----GEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNP-VTCDL  110 (343)
Q Consensus        36 ~p~~l~~d~~----g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~-~~~~l  110 (343)
                      ...++++.++    |..++++..++.|..||..+++......                   .....+..+.+++ +...|
T Consensus        71 ~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-------------------~~~~~i~~~~~~~~~~~~l  131 (366)
T 3k26_A           71 NFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYV-------------------GHGNAINELKFHPRDPNLL  131 (366)
T ss_dssp             CEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEE-------------------SCCSCEEEEEECSSCTTEE
T ss_pred             cEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeec-------------------CCCCcEEEEEECCCCCCEE
Confidence            4678888888    6678888899999999988765433211                   1223467899987 44556


Q ss_pred             EEEeCCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCC
Q 019290          111 YIADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLK  190 (343)
Q Consensus       111 ~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~  190 (343)
                      ..+.....|..+|.++++.......... ....+..+++++ ++...++...                 .+.|..||..+
T Consensus       132 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~v~~~~~~~-~~~~l~~~~~-----------------dg~i~i~d~~~  192 (366)
T 3k26_A          132 LSVSKDHALRLWNIQTDTLVAIFGGVEG-HRDEVLSADYDL-LGEKIMSCGM-----------------DHSLKLWRINS  192 (366)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEECSTTS-CSSCEEEEEECT-TSSEEEEEET-----------------TSCEEEEESCS
T ss_pred             EEEeCCCeEEEEEeecCeEEEEeccccc-ccCceeEEEECC-CCCEEEEecC-----------------CCCEEEEECCC
Confidence            6664434499999988765544321111 124578899999 4766554432                 45677777765


Q ss_pred             CceEEe-----------------------------ecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCcccc-----
Q 019290          191 KNVTVM-----------------------------YNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTT-----  236 (343)
Q Consensus       191 ~~~~~~-----------------------------~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~-----  236 (343)
                      ++....                             .........++++  ++ ++++...++.|..|++......     
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~  269 (366)
T 3k26_A          193 KRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GD-LILSKSCENAIVCWKPGKMEDDIDKIK  269 (366)
T ss_dssp             HHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TT-EEEEECSSSEEEEEEESSTTCCGGGCC
T ss_pred             CccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CC-EEEEEecCCEEEEEeCCCccccccccc
Confidence            432110                             0022345667776  55 4555567899999997642110     


Q ss_pred             ---ccceeeec---CCCCCCceeeCCC--CCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECCC-CC----E
Q 019290          237 ---YTPQLFAE---MPRFPDNIKSDSK--GEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVN-GN----V  303 (343)
Q Consensus       237 ---~~~~~~~~---~~~~p~~i~~d~~--G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~-g~----~  303 (343)
                         .....+..   .......+++.++  |++.++...                        .+.|..+|.+ ++    .
T Consensus       270 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~------------------------dg~i~vwd~~~~~~~~~~  325 (366)
T 3k26_A          270 PSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQ------------------------VGKLYVWDLEVEDPHKAK  325 (366)
T ss_dssp             TTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECT------------------------TSCEEEEECCSSSGGGCE
T ss_pred             cCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEec------------------------CCcEEEEECCCCCCcccc
Confidence               00011111   1122445666666  887776654                        3466667754 32    3


Q ss_pred             EEEeeCCCCCccCCceeEEEe-CCEEEEecCCCCeEEEEc
Q 019290          304 VDVLDGNEGNTLNSVSEVQEY-GEYLYTGSSVQPYVVVIK  342 (343)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~~~~i~~~~  342 (343)
                      ...+....  ....+..+... ++++.++......|.+++
T Consensus       326 ~~~~~~~~--~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd  363 (366)
T 3k26_A          326 CTTLTHHK--CGAAIRQTSFSRDSSILIAVCDDASIWRWD  363 (366)
T ss_dssp             EEEECCTT--CCSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             ceEEcccc--cCCceEEEEeCCCCCeEEEEeCCCEEEEEE
Confidence            33333221  12345555544 566666666666777765

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=98.63  E-value=2.1e-05  Score=71.67  Aligned_cols=194  Identities=14%  Similarity=0.044  Sum_probs=115.7

Q ss_pred             CCceEEEcC-CCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCe-EEEE
Q 019290           36 GPESLAFDC-NGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCD-LYIA  113 (343)
Q Consensus        36 ~p~~l~~d~-~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~-l~v~  113 (343)
                      ...++++.+ +++.+.++..++.|..||..++....-....            ..........+..+++++++.+ |+.+
T Consensus        83 ~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~------------~~~~~~h~~~v~~~~~~p~~~~~l~s~  150 (402)
T 2aq5_A           83 PVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREP------------VITLEGHTKRVGIVAWHPTAQNVLLSA  150 (402)
T ss_dssp             CEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSC------------SEEEECCSSCEEEEEECSSBTTEEEEE
T ss_pred             CEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCc------------eEEecCCCCeEEEEEECcCCCCEEEEE
Confidence            467899999 8998888889999999998765211000000            0000122335678999984334 4555


Q ss_pred             eCCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCce
Q 019290          114 DAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNV  193 (343)
Q Consensus       114 ~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~  193 (343)
                      .....|..+|.++++........ . ....+..+++.+ ++.++++...                 .+.|..||..+++.
T Consensus       151 ~~dg~i~iwd~~~~~~~~~~~~~-~-~~~~v~~~~~~~-~~~~l~~~~~-----------------d~~i~iwd~~~~~~  210 (402)
T 2aq5_A          151 GCDNVILVWDVGTGAAVLTLGPD-V-HPDTIYSVDWSR-DGALICTSCR-----------------DKRVRVIEPRKGTV  210 (402)
T ss_dssp             ETTSCEEEEETTTTEEEEEECTT-T-CCSCEEEEEECT-TSSCEEEEET-----------------TSEEEEEETTTTEE
T ss_pred             cCCCEEEEEECCCCCccEEEecC-C-CCCceEEEEECC-CCCEEEEEec-----------------CCcEEEEeCCCCce
Confidence            43334999999888654432101 1 124578899999 5776554432                 46788999887765


Q ss_pred             EEee-cCC--CCcceeEEecCCCEEEEEE--cCCCeEEEEEccCccccccceeee-cCCCCCCceeeCCCCCEEEE
Q 019290          194 TVMY-NGL--SFPNGVALSNNNSFLLLAE--SATLKILRFWLQGERTTYTPQLFA-EMPRFPDNIKSDSKGEFWIA  263 (343)
Q Consensus       194 ~~~~-~~~--~~~~~i~~~~d~~~lyv~~--~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~p~~i~~d~~G~lwi~  263 (343)
                      .... ...  ..+..+++++++..+++..  ..++.|..|++.....  ...... ........++++++|+..+.
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~  284 (402)
T 2aq5_A          211 VAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEE--PLSLQELDTSSGVLLPFFDPDTNIVYL  284 (402)
T ss_dssp             EEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSS--CSEEEECCCCSSCEEEEEETTTTEEEE
T ss_pred             eeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccC--CceEEeccCCCceeEEEEcCCCCEEEE
Confidence            4332 222  2367889999887554432  5678999999865221  111111 11222455778999876643

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=98.60  E-value=2.8e-05  Score=75.27  Aligned_cols=188  Identities=11%  Similarity=0.047  Sum_probs=111.4

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCe-EEEEe
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCD-LYIAD  114 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~-l~v~~  114 (343)
                      .|..++++|+|+.+.++. ++.+..++..+++.....                   ......+..+++++ ++. |..+.
T Consensus        20 ~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~~~~~-------------------~~h~~~v~~~~~sp-dg~~lasg~   78 (611)
T 1nr0_A           20 TAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIY-------------------TEHSHQTTVAKTSP-SGYYCASGD   78 (611)
T ss_dssp             CCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEE-------------------CCCSSCEEEEEECT-TSSEEEEEE
T ss_pred             ceeEEeeCCCCCEEEeCC-CCEEEEecCCCcccCeEe-------------------cCCCCceEEEEECC-CCcEEEEEe
Confidence            588999999999666554 568999998654332221                   11223467899999 555 44454


Q ss_pred             CCCeEEEEeCCCCeE--EEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCc
Q 019290          115 AYFGLMVVGPNGGQA--QQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKN  192 (343)
Q Consensus       115 ~~~gi~~~d~~~~~~--~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~  192 (343)
                      ....|..+|.++++.  .......    ...+.++++++ ||...++....             ....+.|+.+|.. ..
T Consensus        79 ~d~~v~lWd~~~~~~~~~~~~~~~----~~~v~~v~fs~-dg~~l~~~~~~-------------~~~~~~v~~wd~~-~~  139 (611)
T 1nr0_A           79 VHGNVRIWDTTQTTHILKTTIPVF----SGPVKDISWDS-ESKRIAAVGEG-------------RERFGHVFLFDTG-TS  139 (611)
T ss_dssp             TTSEEEEEESSSTTCCEEEEEECS----SSCEEEEEECT-TSCEEEEEECC-------------SSCSEEEEETTTC-CB
T ss_pred             CCCCEEEeECCCCcceeeEeeccc----CCceEEEEECC-CCCEEEEEECC-------------CCceeEEEEeeCC-CC
Confidence            334488889864432  1111111    13578999999 57766543220             0012467777742 22


Q ss_pred             eEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEecc
Q 019290          193 VTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNS  266 (343)
Q Consensus       193 ~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~~  266 (343)
                      ...+.......+.++|+|++....++...++.|..|+.....   ....+..-......+++.++|++.++...
T Consensus       140 ~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~---~~~~l~~H~~~V~~v~fspdg~~las~s~  210 (611)
T 1nr0_A          140 NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK---FKSTFGEHTKFVHSVRYNPDGSLFASTGG  210 (611)
T ss_dssp             CBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBE---EEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             cceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCe---EeeeeccccCceEEEEECCCCCEEEEEEC
Confidence            223333344578899999987656677778999999865311   11122111222345778999988777655

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=98.59  E-value=6.7e-05  Score=65.70  Aligned_cols=186  Identities=10%  Similarity=-0.025  Sum_probs=110.9

Q ss_pred             CceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCC
Q 019290           37 PESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAY  116 (343)
Q Consensus        37 p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~  116 (343)
                      ..++++.++++.+.++..++.|..||..+++......                   .....+..+++++++..|..+...
T Consensus        58 v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~-------------------~h~~~v~~~~~~~~~~~l~sgs~D  118 (304)
T 2ynn_A           58 VRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFE-------------------AHPDYIRSIAVHPTKPYVLSGSDD  118 (304)
T ss_dssp             EEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEE-------------------CCSSCEEEEEECSSSSEEEEEETT
T ss_pred             EEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEe-------------------CCCCcEEEEEEcCCCCEEEEECCC
Confidence            5688899999988889999999999998765432211                   122346789999844445555433


Q ss_pred             CeEEEEeCCCC-eEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceE-
Q 019290          117 FGLMVVGPNGG-QAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVT-  194 (343)
Q Consensus       117 ~gi~~~d~~~~-~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-  194 (343)
                      ..|..+|.+++ .........    ...+..+++.|.++.++++...                 .+.|..||...+... 
T Consensus       119 ~~v~lWd~~~~~~~~~~~~~h----~~~v~~v~~~p~~~~~l~sgs~-----------------D~~v~iwd~~~~~~~~  177 (304)
T 2ynn_A          119 LTVKLWNWENNWALEQTFEGH----EHFVMCVAFNPKDPSTFASGCL-----------------DRTVKVWSLGQSTPNF  177 (304)
T ss_dssp             SCEEEEEGGGTTEEEEEECCC----CSCEEEEEECTTCTTEEEEEET-----------------TSEEEEEETTCSSCSE
T ss_pred             CeEEEEECCCCcchhhhhccc----CCcEEEEEECCCCCCEEEEEeC-----------------CCeEEEEECCCCCccc
Confidence            34889998765 322221111    1357889999843565554332                 456777887544322 


Q ss_pred             EeecC-CCCcceeEEec--CCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEecc
Q 019290          195 VMYNG-LSFPNGVALSN--NNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNS  266 (343)
Q Consensus       195 ~~~~~-~~~~~~i~~~~--d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~~  266 (343)
                      .+... ......+++.+  ++. +.++...++.|..|++.....   ...+..-......+++.+++.+.++...
T Consensus       178 ~~~~~~~~~v~~~~~~~~~~~~-~l~s~s~D~~i~iWd~~~~~~---~~~~~~h~~~v~~~~~~p~~~~l~s~s~  248 (304)
T 2ynn_A          178 TLTTGQERGVNYVDYYPLPDKP-YMITASDDLTIKIWDYQTKSC---VATLEGHMSNVSFAVFHPTLPIIISGSE  248 (304)
T ss_dssp             EEECCCTTCEEEEEECCSTTCC-EEEEEETTSEEEEEETTTTEE---EEEEECCSSCEEEEEECSSSSEEEEEET
T ss_pred             eeccCCcCcEEEEEEEEcCCCC-EEEEEcCCCeEEEEeCCCCcc---ceeeCCCCCCEEEEEECCCCCEEEEEcC
Confidence            22222 23345566665  455 445556789999999865211   1122111112334667888887776655

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=98.58  E-value=8.2e-05  Score=64.60  Aligned_cols=229  Identities=13%  Similarity=0.020  Sum_probs=131.9

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCe-EEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEe
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGW-TEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIAD  114 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~  114 (343)
                      ...++++.++++.++++..++.+..|+...... ..+                 ............+.++  ++.++.+.
T Consensus        61 ~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~-----------------~~~~~~~~~i~~~~~~--~~~l~~~~  121 (313)
T 3odt_A           61 FLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPL-----------------YTLIGHQGNVCSLSFQ--DGVVISGS  121 (313)
T ss_dssp             CEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC------------------CEECCCSSCEEEEEEE--TTEEEEEE
T ss_pred             cEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcc-----------------cchhhcccCEEEEEec--CCEEEEEe
Confidence            567899999999888889999999888654210 000                 0001222345677775  56777775


Q ss_pred             CCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceE
Q 019290          115 AYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVT  194 (343)
Q Consensus       115 ~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~  194 (343)
                      ....+..+|.  ++........    ...+..+++.+.++...++...                 .+.|..+|.. ....
T Consensus       122 ~d~~i~~~d~--~~~~~~~~~~----~~~v~~~~~~~~~~~~l~~~~~-----------------d~~i~i~d~~-~~~~  177 (313)
T 3odt_A          122 WDKTAKVWKE--GSLVYNLQAH----NASVWDAKVVSFSENKFLTASA-----------------DKTIKLWQND-KVIK  177 (313)
T ss_dssp             TTSEEEEEET--TEEEEEEECC----SSCEEEEEEEETTTTEEEEEET-----------------TSCEEEEETT-EEEE
T ss_pred             CCCCEEEEcC--CcEEEecccC----CCceeEEEEccCCCCEEEEEEC-----------------CCCEEEEecC-ceEE
Confidence            5455888882  3332222211    1345666665522444443322                 4568888843 2223


Q ss_pred             Eeec-CCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEeccCCCcccc
Q 019290          195 VMYN-GLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNSARGKIES  273 (343)
Q Consensus       195 ~~~~-~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~~~~~~~~~  273 (343)
                      .+.. .......+++++++.  +++...++.|..|++.....   ...+....+....++++++|.+..++..       
T Consensus       178 ~~~~~~~~~i~~~~~~~~~~--~~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~i~~~~~~~~~~l~~~~~d-------  245 (313)
T 3odt_A          178 TFSGIHNDVVRHLAVVDDGH--FISCSNDGLIKLVDMHTGDV---LRTYEGHESFVYCIKLLPNGDIVSCGED-------  245 (313)
T ss_dssp             EECSSCSSCEEEEEEEETTE--EEEEETTSEEEEEETTTCCE---EEEEECCSSCEEEEEECTTSCEEEEETT-------
T ss_pred             EEeccCcccEEEEEEcCCCe--EEEccCCCeEEEEECCchhh---hhhhhcCCceEEEEEEecCCCEEEEecC-------
Confidence            3332 345567889998886  44556788999999865221   1222222233456788999977766554       


Q ss_pred             ccccccccccCCCcccCCCeEEEECC-CCCEEEEeeCCCCCccCCceeEEEe-CCEEEEecCCCCeEEEEc
Q 019290          274 NKKTAFCEETAKPWFLRDPVGVKFDV-NGNVVDVLDGNEGNTLNSVSEVQEY-GEYLYTGSSVQPYVVVIK  342 (343)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~~~~i~~~~  342 (343)
                                        +.|..+|. +++....+..+..    .+..+... ++++.. ......|.+++
T Consensus       246 ------------------g~v~iwd~~~~~~~~~~~~~~~----~i~~~~~~~~~~~~~-~~~dg~i~iw~  293 (313)
T 3odt_A          246 ------------------RTVRIWSKENGSLKQVITLPAI----SIWSVDCMSNGDIIV-GSSDNLVRIFS  293 (313)
T ss_dssp             ------------------SEEEEECTTTCCEEEEEECSSS----CEEEEEECTTSCEEE-EETTSCEEEEE
T ss_pred             ------------------CEEEEEECCCCceeEEEeccCc----eEEEEEEccCCCEEE-EeCCCcEEEEe
Confidence                              47778886 5777666654332    34444443 555444 44455666654

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=98.57  E-value=3.1e-05  Score=77.11  Aligned_cols=187  Identities=10%  Similarity=-0.020  Sum_probs=116.4

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      ...++++.++|+.+.++..++.|..||..+++......                   .....+..+++++++..|.++..
T Consensus        57 ~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~-------------------~~~~~v~~~~~s~~~~~l~~~~~  117 (814)
T 3mkq_A           57 PVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFE-------------------AHPDYIRSIAVHPTKPYVLSGSD  117 (814)
T ss_dssp             CEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEE-------------------CCSSCEEEEEECSSSSEEEEEET
T ss_pred             cEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEe-------------------cCCCCEEEEEEeCCCCEEEEEcC
Confidence            46799999999988888899999999988765432211                   12234678999984446666654


Q ss_pred             CCeEEEEeCCCC-eEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceE
Q 019290          116 YFGLMVVGPNGG-QAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVT  194 (343)
Q Consensus       116 ~~gi~~~d~~~~-~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~  194 (343)
                      ...|..+|.+++ .........    ...+..+++.+.++.++++...                 .+.|..||..++...
T Consensus       118 dg~i~vw~~~~~~~~~~~~~~~----~~~v~~~~~~p~~~~~l~~~~~-----------------dg~v~vwd~~~~~~~  176 (814)
T 3mkq_A          118 DLTVKLWNWENNWALEQTFEGH----EHFVMCVAFNPKDPSTFASGCL-----------------DRTVKVWSLGQSTPN  176 (814)
T ss_dssp             TSEEEEEEGGGTSEEEEEEECC----SSCEEEEEEETTEEEEEEEEET-----------------TSEEEEEETTCSSCS
T ss_pred             CCEEEEEECCCCceEEEEEcCC----CCcEEEEEEEcCCCCEEEEEeC-----------------CCeEEEEECCCCcce
Confidence            445888998765 332222211    1347788898832555554322                 467888887655432


Q ss_pred             -EeecCC-CCcceeEEec--CCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEecc
Q 019290          195 -VMYNGL-SFPNGVALSN--NNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNS  266 (343)
Q Consensus       195 -~~~~~~-~~~~~i~~~~--d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~~  266 (343)
                       .+.... .....+++++  ++..++. ...++.|..|++.....   ...+....+....+++.++|.+.++...
T Consensus       177 ~~~~~~~~~~v~~~~~~~~~~~~~l~~-~~~dg~i~~~d~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~  248 (814)
T 3mkq_A          177 FTLTTGQERGVNYVDYYPLPDKPYMIT-ASDDLTIKIWDYQTKSC---VATLEGHMSNVSFAVFHPTLPIIISGSE  248 (814)
T ss_dssp             EEEECCCTTCCCEEEECCSTTCCEEEE-ECTTSEEEEEETTTTEE---EEEEECCSSCEEEEEECSSSSEEEEEET
T ss_pred             eEEecCCCCCEEEEEEEECCCCCEEEE-EeCCCEEEEEECCCCcE---EEEEcCCCCCEEEEEEcCCCCEEEEEeC
Confidence             222222 5567888888  7775554 45678999999765221   1222211222345677888876666544

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=98.56  E-value=3.2e-06  Score=81.33  Aligned_cols=179  Identities=10%  Similarity=0.001  Sum_probs=103.0

Q ss_pred             CceEEEcCCCCeeEEE-ecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           37 PESLAFDCNGEGPYVG-VSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        37 p~~l~~d~~g~~l~~~-~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      ..++++++||+.+.+. ..++.+..|+.++++...+..                   ........+++++ +..+|.++.
T Consensus        24 ~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~-------------------~~~~~~~~~~~sp-d~~l~~~~~   83 (582)
T 3o4h_A           24 KYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNR-------------------EPINSVLDPHYGV-GRVILVRDV   83 (582)
T ss_dssp             EEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCS-------------------SCCSEECEECTTC-SEEEEEEEC
T ss_pred             hheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeec-------------------ccccccccccCCC-CeEEEEecc
Confidence            5788999999966544 447777677766665544421                   1111244566676 445565553


Q ss_pred             --CC---eEEEEeC--CCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeC
Q 019290          116 --YF---GLMVVGP--NGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDP  188 (343)
Q Consensus       116 --~~---gi~~~d~--~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~  188 (343)
                        +.   .++.++.  +++.. .+... .+   .....+..|+ ++.++++...                  +.+..||.
T Consensus        84 ~~g~~~~~l~~~~~~~~g~~~-~l~~~-~~---~~~~~~s~dg-~~~~~~s~~~------------------~~~~l~d~  139 (582)
T 3o4h_A           84 SKGAEQHALFKVNTSRPGEEQ-RLEAV-KP---MRILSGVDTG-EAVVFTGATE------------------DRVALYAL  139 (582)
T ss_dssp             STTSCCEEEEEEETTSTTCCE-ECTTS-CS---BEEEEEEECS-SCEEEEEECS------------------SCEEEEEE
T ss_pred             CCCCcceEEEEEeccCCCccc-cccCC-CC---ceeeeeCCCC-CeEEEEecCC------------------CCceEEEc
Confidence              11   4777887  54433 33211 11   1123445555 2455554432                  33446677


Q ss_pred             CCCceEEeecCCCCcceeEEecCCCEEEEEEcC---CCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEec
Q 019290          189 LKKNVTVMYNGLSFPNGVALSNNNSFLLLAESA---TLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMN  265 (343)
Q Consensus       189 ~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~  265 (343)
                      ++++.+.+.....  ...+++|||+.++.+...   ...|+++++++    ++.+.+....+.....++++||+..++..
T Consensus       140 ~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~----g~~~~l~~~~~~~~~~~~SpDG~~l~~~~  213 (582)
T 3o4h_A          140 DGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSS----GGLRVFDSGEGSFSSASISPGMKVTAGLE  213 (582)
T ss_dssp             ETTEEEEEEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTT----CCCEEECCSSCEEEEEEECTTSCEEEEEE
T ss_pred             cCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCC----CCceEeecCCCccccceECCCCCEEEEcc
Confidence            7777766553322  788899999988765432   15699999876    33344433333345678899997655443

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=98.55  E-value=3.7e-05  Score=70.72  Aligned_cols=204  Identities=11%  Similarity=0.098  Sum_probs=112.6

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCC------------eEEeeecCCCccccccCCCCCcccCCCcCCeeeEEE
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSG------------WTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKF  103 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~  103 (343)
                      ...+++++++|+.+.++..+|.|..|+..++.            ...+.......   .+     .........+..+++
T Consensus        30 ~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~---~~-----~~~~~~~~~V~~l~~  101 (447)
T 3dw8_B           30 IISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEF---DY-----LKSLEIEEKINKIRW  101 (447)
T ss_dssp             SEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEE---EG-----GGTEEECCCCCEEEE
T ss_pred             cEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccc---cc-----cccccccCceEEEEE
Confidence            57799999999988888899999999987654            11221000000   00     000000134678899


Q ss_pred             eCCC--CeEEEEeCCCeEEEEeCCCCeEEEccc------------------------------------ccCCCCccCcc
Q 019290          104 NPVT--CDLYIADAYFGLMVVGPNGGQAQQLAS------------------------------------SAGGIPFRFTN  145 (343)
Q Consensus       104 ~~~~--~~l~v~~~~~gi~~~d~~~~~~~~~~~------------------------------------~~~~~~~~~~~  145 (343)
                      .+++  ..+..+.....|..++..+++......                                    .........+.
T Consensus       102 ~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  181 (447)
T 3dw8_B          102 LPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHIN  181 (447)
T ss_dssp             CCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCC
T ss_pred             cCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceE
Confidence            9843  345555433347778776543321000                                    00011224578


Q ss_pred             eeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCC-CceEE--------eecCCCCcceeEEecCCCEEE
Q 019290          146 DLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLK-KNVTV--------MYNGLSFPNGVALSNNNSFLL  216 (343)
Q Consensus       146 ~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~~~~~--------~~~~~~~~~~i~~~~d~~~ly  216 (343)
                      .+++.+ ++.++++. .                 .+.|..||... ++...        +.........++++|++..++
T Consensus       182 ~~~~~~-~~~~l~s~-~-----------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l  242 (447)
T 3dw8_B          182 SISINS-DYETYLSA-D-----------------DLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTF  242 (447)
T ss_dssp             EEEECT-TSSEEEEE-C-----------------SSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEE
T ss_pred             EEEEcC-CCCEEEEe-C-----------------CCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEE
Confidence            889999 57777654 2                 45677888762 22221        112234467899999983345


Q ss_pred             EEEcCCCeEEEEEccCccccc-cceeeecCCC------------CCCceeeCCCCCEEEEecc
Q 019290          217 LAESATLKILRFWLQGERTTY-TPQLFAEMPR------------FPDNIKSDSKGEFWIAMNS  266 (343)
Q Consensus       217 v~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~------------~p~~i~~d~~G~lwi~~~~  266 (343)
                      ++...++.|..|++....... ....+.....            ....++++++|++.++...
T Consensus       243 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~  305 (447)
T 3dw8_B          243 VYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY  305 (447)
T ss_dssp             EEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES
T ss_pred             EEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC
Confidence            555668899999987532100 1222221111            2345778999988776544

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=98.55  E-value=9.8e-05  Score=77.25  Aligned_cols=190  Identities=13%  Similarity=0.043  Sum_probs=118.0

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      ...+++++++|+.+.++..++.|..||..+++...-.                   ......+..+++++++..|..+..
T Consensus       617 ~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~-------------------~~h~~~v~~~~~s~~~~~l~s~~~  677 (1249)
T 3sfz_A          617 AVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDI-------------------KAHEDEVLCCAFSSDDSYIATCSA  677 (1249)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE-------------------CCCSSCEEEEEECTTSSEEEEEET
T ss_pred             cEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEe-------------------ccCCCCEEEEEEecCCCEEEEEeC
Confidence            4568899999998888889999999999876533221                   122335678999984445555543


Q ss_pred             CCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCC-CeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceE
Q 019290          116 YFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNT-GIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVT  194 (343)
Q Consensus       116 ~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~d-g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~  194 (343)
                      ...|..+|..+++........    ...+..+++.+.. +.+.++...                 .+.|..||..+++..
T Consensus       678 d~~v~vwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~l~sg~~-----------------d~~v~vwd~~~~~~~  736 (1249)
T 3sfz_A          678 DKKVKIWDSATGKLVHTYDEH----SEQVNCCHFTNKSNHLLLATGSN-----------------DFFLKLWDLNQKECR  736 (1249)
T ss_dssp             TSEEEEEETTTCCEEEEEECC----SSCEEEEEECSSSSCCEEEEEET-----------------TSCEEEEETTSSSEE
T ss_pred             CCeEEEEECCCCceEEEEcCC----CCcEEEEEEecCCCceEEEEEeC-----------------CCeEEEEECCCcchh
Confidence            345999999888654432221    1346778887731 334443322                 456888898777654


Q ss_pred             E-eecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCcccccccee---eec-------CCCCCCceeeCCCCCEEEE
Q 019290          195 V-MYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQL---FAE-------MPRFPDNIKSDSKGEFWIA  263 (343)
Q Consensus       195 ~-~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~---~~~-------~~~~p~~i~~d~~G~lwi~  263 (343)
                      . +.........++++++++.+..+ +.++.|..|++...........   ...       .......++++++|+..++
T Consensus       737 ~~~~~h~~~v~~~~~sp~~~~l~s~-s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~  815 (1249)
T 3sfz_A          737 NTMFGHTNSVNHCRFSPDDELLASC-SADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIV  815 (1249)
T ss_dssp             EEECCCSSCEEEEEECSSTTEEEEE-ESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEE
T ss_pred             heecCCCCCEEEEEEecCCCEEEEE-ECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEE
Confidence            3 33344557889999999866544 5678999999875321011100   000       0112345677889987776


Q ss_pred             ecc
Q 019290          264 MNS  266 (343)
Q Consensus       264 ~~~  266 (343)
                      ...
T Consensus       816 ~~~  818 (1249)
T 3sfz_A          816 AAK  818 (1249)
T ss_dssp             EET
T ss_pred             EcC
Confidence            544

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=98.55  E-value=3.6e-06  Score=88.12  Aligned_cols=233  Identities=8%  Similarity=0.009  Sum_probs=142.9

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      ...+++++++|+.+.++..++.|..||..+++.....                    .....+..+.+.+ ++.++.+..
T Consensus      1005 ~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~--------------------~~~~~v~~~~~~~-~~~l~~~~~ 1063 (1249)
T 3sfz_A         1005 AVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQ--------------------AHQETVKDFRLLQ-DSRLLSWSF 1063 (1249)
T ss_dssp             CCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCB--------------------CCSSCEEEEEECS-SSEEEEEES
T ss_pred             ceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEe--------------------cCCCcEEEEEEcC-CCcEEEEEC
Confidence            4678999999998888889999999998876543221                    1223456788888 778887765


Q ss_pred             CCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceE-
Q 019290          116 YFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVT-  194 (343)
Q Consensus       116 ~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-  194 (343)
                      ...+..+|..+++........    ...+..+++.+ ++.++++...                 .+.|..||..+++.. 
T Consensus      1064 dg~v~vwd~~~~~~~~~~~~~----~~~v~~~~~s~-d~~~l~s~s~-----------------d~~v~iwd~~~~~~~~ 1121 (1249)
T 3sfz_A         1064 DGTVKVWNVITGRIERDFTCH----QGTVLSCAISS-DATKFSSTSA-----------------DKTAKIWSFDLLSPLH 1121 (1249)
T ss_dssp             SSEEEEEETTTTCCCEEEECC----SSCCCCEEECS-SSSSCEEECC-----------------SSCCCEECSSSSSCSB
T ss_pred             CCcEEEEECCCCceeEEEccc----CCcEEEEEECC-CCCEEEEEcC-----------------CCcEEEEECCCcceee
Confidence            556999999887643322221    13478899999 5776665433                 456777777655532 


Q ss_pred             EeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceee------ecCCCCCCceeeCCCCCEEEEeccCC
Q 019290          195 VMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLF------AEMPRFPDNIKSDSKGEFWIAMNSAR  268 (343)
Q Consensus       195 ~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~------~~~~~~p~~i~~d~~G~lwi~~~~~~  268 (343)
                      .+.........++++++++.+..+ ..++.|..|++.+..........      ....+....++++++|++.++..+  
T Consensus      1122 ~l~~h~~~v~~~~~s~dg~~lat~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~g-- 1198 (1249)
T 3sfz_A         1122 ELKGHNGCVRCSAFSLDGILLATG-DDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAGG-- 1198 (1249)
T ss_dssp             CCCCCSSCEEEEEECSSSSEEEEE-ETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEESS--
T ss_pred             eeccCCCcEEEEEECCCCCEEEEE-eCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECCC--
Confidence            222233446789999999866554 56788999998753221111111      111223566889999987776543  


Q ss_pred             CccccccccccccccCCCcccCCCeEEEECC-CCCEEEEeeCCCCCccCCceeEEEe-CCEEEEecCCCCeEEEEc
Q 019290          269 GKIESNKKTAFCEETAKPWFLRDPVGVKFDV-NGNVVDVLDGNEGNTLNSVSEVQEY-GEYLYTGSSVQPYVVVIK  342 (343)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~~~~i~~~~  342 (343)
                                              .+..+|. .++.+..+.....    .+..+... +++..++......+.+++
T Consensus      1199 ------------------------~v~vwd~~~g~~~~~~~~~~~----~i~~~~~s~dg~~l~~~~~dg~v~vw~ 1246 (1249)
T 3sfz_A         1199 ------------------------YLKWWNVATGDSSQTFYTNGT----NLKKIHVSPDFRTYVTVDNLGILYILQ 1246 (1249)
T ss_dssp             ------------------------SEEEBCSSSCBCCCCCCCSSC----CCCCCEECSSSCCEEEECTTCCEEEEC
T ss_pred             ------------------------eEEEEECCCCceeeeeeccCC----cccEEEECCCCCEEEEecCCcEEEEEe
Confidence                                    5666775 4555444432221    22222222 455555555555666654

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=98.55  E-value=0.0003  Score=61.78  Aligned_cols=187  Identities=9%  Similarity=0.055  Sum_probs=110.1

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      ...++++.++|+.+.++..++.|..++...........                   ..........+.+.+..+..+..
T Consensus        88 ~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~l~s~s~  148 (340)
T 4aow_A           88 FVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFV-------------------GHTKDVLSVAFSSDNRQIVSGSR  148 (340)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-------------------CCSSCEEEEEECTTSSCEEEEET
T ss_pred             CEEEEEECCCCCEEEEEcccccceEEeecccceeeeec-------------------CCCCceeEEEEeecCccceeecC
Confidence            46789999999988888999999999987654433221                   11123445666664455666643


Q ss_pred             CCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCC-CCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceE
Q 019290          116 YFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPN-TGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVT  194 (343)
Q Consensus       116 ~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~-dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~  194 (343)
                      ...+..+|.............   ....+..+++.+. .+.+.++...                 .+.|..+|..+++..
T Consensus       149 d~~~~~~d~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~s~~~-----------------d~~i~i~d~~~~~~~  208 (340)
T 4aow_A          149 DKTIKLWNTLGVCKYTVQDES---HSEWVSCVRFSPNSSNPIIVSCGW-----------------DKLVKVWNLANCKLK  208 (340)
T ss_dssp             TSCEEEECTTSCEEEEECSSS---CSSCEEEEEECSCSSSCEEEEEET-----------------TSCEEEEETTTTEEE
T ss_pred             CCeEEEEEeCCCceEEEEecc---ccCcccceEEccCCCCcEEEEEcC-----------------CCEEEEEECCCCcee
Confidence            344888887755433221111   1133455666542 1344443322                 456888888776654


Q ss_pred             Eee-cCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEecc
Q 019290          195 VMY-NGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNS  266 (343)
Q Consensus       195 ~~~-~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~~  266 (343)
                      ... ........++++++++.++. ...++.|..|++.....   ...+ ........++..+++.+..+..+
T Consensus       209 ~~~~~h~~~v~~~~~s~~~~~l~s-~s~Dg~i~iwd~~~~~~---~~~~-~~~~~v~~~~~~~~~~~~~~~~d  276 (340)
T 4aow_A          209 TNHIGHTGYLNTVTVSPDGSLCAS-GGKDGQAMLWDLNEGKH---LYTL-DGGDIINALCFSPNRYWLCAATG  276 (340)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEE-EETTCEEEEEETTTTEE---EEEE-ECSSCEEEEEECSSSSEEEEEET
T ss_pred             eEecCCCCcEEEEEECCCCCEEEE-EeCCCeEEEEEeccCce---eeee-cCCceEEeeecCCCCceeeccCC
Confidence            333 23345678999999986554 45688999999865221   1111 11222344567777877766654

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=98.54  E-value=1.7e-05  Score=77.39  Aligned_cols=158  Identities=9%  Similarity=-0.033  Sum_probs=96.7

Q ss_pred             CCceEEEcCCCCeeEEEecC----------CEEEEEEcCC------CCeEEeeecCCCccccccCCCCCcccCCCcCCee
Q 019290           36 GPESLAFDCNGEGPYVGVSD----------GRILKWKAAN------SGWTEFATTAPHRAREICDGSTNTTLEPLCGRPL   99 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~----------g~i~~~d~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~   99 (343)
                      ...++++++||+.+++...+          ..|+.+|..+      ++...+..                   .......
T Consensus       131 ~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~-------------------~~~~~~~  191 (662)
T 3azo_A          131 RWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSD-------------------DAHRFVT  191 (662)
T ss_dssp             EEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSC-------------------SCSSEEC
T ss_pred             cccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEe-------------------cCCCccc
Confidence            35688999999977655443          4799999877      55443310                   1112345


Q ss_pred             eEEEeCCCCeEEEEeCC--------CeEEEEeCC-CC---eEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCccccc
Q 019290          100 GIKFNPVTCDLYIADAY--------FGLMVVGPN-GG---QAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQR  167 (343)
Q Consensus       100 gi~~~~~~~~l~v~~~~--------~gi~~~d~~-~~---~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~  167 (343)
                      ++.+++++..|+++...        ..|+.+|.+ ++   +.+.+....    ...+..+++.+ ||+++++...     
T Consensus       192 ~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~----~~~~~~~~~sp-dg~l~~~~~~-----  261 (662)
T 3azo_A          192 GPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGP----EEAIAQAEWAP-DGSLIVATDR-----  261 (662)
T ss_dssp             CCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEET----TBCEEEEEECT-TSCEEEEECT-----
T ss_pred             CceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCC----CceEcceEECC-CCeEEEEECC-----
Confidence            67788855567665422        359999998 56   444443211    13466788999 6887776543     


Q ss_pred             ccceeeeeecCCCceEEEEeCCCCceEEeecCCCC---------cceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290          168 RQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSF---------PNGVALSNNNSFLLLAESATLKILRFWLQG  232 (343)
Q Consensus       168 ~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~---------~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~  232 (343)
                                .....|+++|.++++.+.+......         ...++++++++.++.+......||++++++
T Consensus       262 ----------~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~  325 (662)
T 3azo_A          262 ----------TGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGKGAAVLGILDPES  325 (662)
T ss_dssp             ----------TSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBSSSCEEEEEETTT
T ss_pred             ----------CCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEcCccEEEEEECCC
Confidence                      1134799999877777665432111         346778778875555443345677777654

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.53  E-value=3.7e-06  Score=79.81  Aligned_cols=198  Identities=9%  Similarity=-0.004  Sum_probs=122.8

Q ss_pred             cccccccCCCCCCCceEEE-c-CCCCeeEEEe------------------cCCEEEEEEcCCCCeE-EeeecCCCccccc
Q 019290           24 KSYQQLQLPGVVGPESLAF-D-CNGEGPYVGV------------------SDGRILKWKAANSGWT-EFATTAPHRAREI   82 (343)
Q Consensus        24 ~~~~~~~~~~~~~p~~l~~-d-~~g~~l~~~~------------------~~g~i~~~d~~~~~~~-~~~~~~~~~~~~~   82 (343)
                      +..+.+++|....|+++++ . ++++.+|++.                  .++.+-.+|.++.+.. ++           
T Consensus       123 ~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI-----------  191 (595)
T 1fwx_A          123 KCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQV-----------  191 (595)
T ss_dssp             EEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEE-----------
T ss_pred             eEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEE-----------
Confidence            3345667886678999998 4 8888788773                  2235667777764321 11           


Q ss_pred             cCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCCC--------------------------------------eEEEEeC
Q 019290           83 CDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYF--------------------------------------GLMVVGP  124 (343)
Q Consensus        83 ~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~~--------------------------------------gi~~~d~  124 (343)
                                .-.+.|.++.++++++.+|+++...                                      ++..+|.
T Consensus       192 ----------~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~  261 (595)
T 1fwx_A          192 ----------LVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDG  261 (595)
T ss_dssp             ----------EESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEEC
T ss_pred             ----------EeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeC
Confidence                      1123577888888666778775221                                      3555666


Q ss_pred             CC--CeE-EEcccccCCCCccCcceeEEeCCCCe-EEEEeCCcccccccceeeeeecCCCceEEEEeCCCCc--------
Q 019290          125 NG--GQA-QQLASSAGGIPFRFTNDLDIDPNTGI-VYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKN--------  192 (343)
Q Consensus       125 ~~--~~~-~~~~~~~~~~~~~~~~~i~~d~~dg~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~--------  192 (343)
                      ++  ++. ......     ...|+++.++| ||+ +|+++..                 ...|..+|.++.+        
T Consensus       262 ~~~~~~~~~~~Ipv-----g~~PhGv~~sP-DGk~v~V~~~~-----------------s~~VsVid~~~~~~~~~~~l~  318 (595)
T 1fwx_A          262 RKEASSLFTRYIPI-----ANNPHGCNMAP-DKKHLCVAGKL-----------------SPTVTVLDVTRFDAVFYENAD  318 (595)
T ss_dssp             SGGGCCSSEEEEEE-----ESSCCCEEECT-TSSEEEEECTT-----------------SSBEEEEEGGGHHHHHHSCCC
T ss_pred             cccCCceeEEEEec-----CCCceEEEEcC-CCCEEEEeCCC-----------------CCeEEEEECcccccccccccC
Confidence            54  221 111111     14689999999 576 6666544                 5678888876432        


Q ss_pred             ----eEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccc-c---ccceeeecCC-----C---CCCceeeCC
Q 019290          193 ----VTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERT-T---YTPQLFAEMP-----R---FPDNIKSDS  256 (343)
Q Consensus       193 ----~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~-~---~~~~~~~~~~-----~---~p~~i~~d~  256 (343)
                          +.....-...|..++|+++| .+|++...+++|.+|+++.... +   ...+++..++     +   ...++..++
T Consensus       319 ~~~~v~~~v~vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~  397 (595)
T 1fwx_A          319 PRSAVVAEPELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDA  397 (595)
T ss_dssp             GGGGEEECCBCCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTC
T ss_pred             cccceEEEcCCCCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCC
Confidence                22223345679999999999 8999999999999999875110 0   0012222111     1   125667899


Q ss_pred             CCCEEEEecc
Q 019290          257 KGEFWIAMNS  266 (343)
Q Consensus       257 ~G~lwi~~~~  266 (343)
                      ||+..++.+.
T Consensus       398 DGk~l~~~Nk  407 (595)
T 1fwx_A          398 TNDWLVCLSK  407 (595)
T ss_dssp             CSSEEEEEES
T ss_pred             CCCEEEEcCC
Confidence            9987777665

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=98.53  E-value=0.00012  Score=70.70  Aligned_cols=82  Identities=13%  Similarity=0.093  Sum_probs=52.5

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      ...++++.++|+.+.++..++.|..||..+++.........            .........+.++++++++..|..+..
T Consensus       192 ~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~------------~~~~~h~~~V~~v~~spdg~~l~s~s~  259 (611)
T 1nr0_A          192 FVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDS------------LKNVAHSGSVFGLTWSPDGTKIASASA  259 (611)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTT------------SSSCSSSSCEEEEEECTTSSEEEEEET
T ss_pred             ceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeecccc------------ccccccCCCEEEEEECCCCCEEEEEeC
Confidence            46789999999978888899999999987765433211000            000012335778999983344555543


Q ss_pred             CCeEEEEeCCCCeE
Q 019290          116 YFGLMVVGPNGGQA  129 (343)
Q Consensus       116 ~~gi~~~d~~~~~~  129 (343)
                      ...|..+|.++++.
T Consensus       260 D~~v~lWd~~~~~~  273 (611)
T 1nr0_A          260 DKTIKIWNVATLKV  273 (611)
T ss_dssp             TSEEEEEETTTTEE
T ss_pred             CCeEEEEeCCCCce
Confidence            33488899887654

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=98.52  E-value=0.0002  Score=63.65  Aligned_cols=145  Identities=13%  Similarity=0.043  Sum_probs=89.3

Q ss_pred             CeeeEEEeC--CCCeEEEEeCCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeee
Q 019290           97 RPLGIKFNP--VTCDLYIADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSI  174 (343)
Q Consensus        97 ~p~gi~~~~--~~~~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~  174 (343)
                      .+..+++++  .+..+..+.....|..+|.++++.........   ...+..+++.+ +|.+.++...            
T Consensus       127 ~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~---~~~i~~~~~~p-dg~~lasg~~------------  190 (343)
T 3lrv_A          127 EIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKS---DVEYSSGVLHK-DSLLLALYSP------------  190 (343)
T ss_dssp             CEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCS---SCCCCEEEECT-TSCEEEEECT------------
T ss_pred             CEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCC---CCceEEEEECC-CCCEEEEEcC------------
Confidence            456788887  55556556444449999998887643322211   13478899999 5887775433            


Q ss_pred             eecCCCceEEEEeCCCCceE--Eeec-CCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCC-
Q 019290          175 ATGDRSGRLLKYDPLKKNVT--VMYN-GLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPD-  250 (343)
Q Consensus       175 ~~~~~~~~v~~~d~~~~~~~--~~~~-~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~-  250 (343)
                           .+.|..||..+++..  .+.. .......+++++++..|..+.  .+.|..||+...........+.. ...+- 
T Consensus       191 -----dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~--~~~v~iwd~~~~~~~~~~~~~~~-~~~~~~  262 (343)
T 3lrv_A          191 -----DGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC--DQTVVCFDLRKDVGTLAYPTYTI-PEFKTG  262 (343)
T ss_dssp             -----TSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE--SSBEEEEETTSSTTCBSSCCCBC------C
T ss_pred             -----CCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe--CCeEEEEEcCCCCcceeeccccc-cccccc
Confidence                 567888898776643  3333 345678999999998776665  34999999875322111111110 11122 


Q ss_pred             --ceeeCCCCCEEEEec
Q 019290          251 --NIKSDSKGEFWIAMN  265 (343)
Q Consensus       251 --~i~~d~~G~lwi~~~  265 (343)
                        .++++++|++.++..
T Consensus       263 ~~~~~~~~~g~~l~~~s  279 (343)
T 3lrv_A          263 TVTYDIDDSGKNMIAYS  279 (343)
T ss_dssp             CEEEEECTTSSEEEEEE
T ss_pred             ceEEEECCCCCEEEEec
Confidence              388999998777643

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=98.52  E-value=7.3e-06  Score=80.71  Aligned_cols=145  Identities=12%  Similarity=0.012  Sum_probs=92.9

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      .+.++++.+||++++. ..++.|+.+|..+++.........                .....+..+++++++..|.++..
T Consensus        18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~----------------~~~~~v~~~~~SpDg~~l~~~~~   80 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKK----------------IESLRAIRYEISPDREYALFSYN   80 (723)
T ss_dssp             CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTT----------------TTTTTCSEEEECTTSSEEEEEES
T ss_pred             cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEecccc----------------ccccccceEEECCCCCEEEEEec
Confidence            5889999999995555 577889999998876655432110                00013568899995455666633


Q ss_pred             C---------CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCe-EEEEeCCcccccccceeeeeecCCCceEEE
Q 019290          116 Y---------FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGI-VYFTDSSIYFQRRQYFMSIATGDRSGRLLK  185 (343)
Q Consensus       116 ~---------~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~  185 (343)
                      .         ..++.+|.++++.+.+.... . ....+..+++.| ||+ |.++.                   .+.|+.
T Consensus        81 ~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~-~-~~~~~~~~~~SP-dG~~la~~~-------------------~~~i~~  138 (723)
T 1xfd_A           81 VEPIYQHSYTGYYVLSKIPHGDPQSLDPPE-V-SNAKLQYAGWGP-KGQQLIFIF-------------------ENNIYY  138 (723)
T ss_dssp             CCCCSSSCCCSEEEEEESSSCCCEECCCTT-C-CSCCCSBCCBCS-STTCEEEEE-------------------TTEEEE
T ss_pred             CccceeecceeeEEEEECCCCceEeccCCc-c-ccccccccEECC-CCCEEEEEE-------------------CCeEEE
Confidence            1         35889999988765553221 1 112366788888 575 44422                   246889


Q ss_pred             EeCCCCceEEeecCCC-------------------CcceeEEecCCCEEEEEE
Q 019290          186 YDPLKKNVTVMYNGLS-------------------FPNGVALSNNNSFLLLAE  219 (343)
Q Consensus       186 ~d~~~~~~~~~~~~~~-------------------~~~~i~~~~d~~~lyv~~  219 (343)
                      +|..+++...+.....                   ...+++++|||+.|+++.
T Consensus       139 ~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~  191 (723)
T 1xfd_A          139 CAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAA  191 (723)
T ss_dssp             ESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEE
T ss_pred             EECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEE
Confidence            9888777655443211                   225799999999887764

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=98.52  E-value=7.7e-05  Score=64.77  Aligned_cols=229  Identities=11%  Similarity=0.027  Sum_probs=126.9

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      ...++++ ++++.++++..+|.|..||..++.......                   .....+..+++++++..|+++..
T Consensus        20 ~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~-------------------~~~~~v~~~~~~~~~~~l~~~~~   79 (313)
T 3odt_A           20 DVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVY-------------------TGQGFLNSVCYDSEKELLLFGGK   79 (313)
T ss_dssp             CEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEE-------------------ECSSCEEEEEEETTTTEEEEEET
T ss_pred             CcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEee-------------------cCCccEEEEEECCCCCEEEEecC
Confidence            4678888 888888888999999999987765433221                   11234678999985555666644


Q ss_pred             CCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEE
Q 019290          116 YFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTV  195 (343)
Q Consensus       116 ~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~  195 (343)
                      ...+..++............... ....+..+.+++  +.++.+..                  .+.|..+|.. .....
T Consensus        80 dg~i~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~--~~l~~~~~------------------d~~i~~~d~~-~~~~~  137 (313)
T 3odt_A           80 DTMINGVPLFATSGEDPLYTLIG-HQGNVCSLSFQD--GVVISGSW------------------DKTAKVWKEG-SLVYN  137 (313)
T ss_dssp             TSCEEEEETTCCTTSCC-CEECC-CSSCEEEEEEET--TEEEEEET------------------TSEEEEEETT-EEEEE
T ss_pred             CCeEEEEEeeecCCCCcccchhh-cccCEEEEEecC--CEEEEEeC------------------CCCEEEEcCC-cEEEe
Confidence            33477777654321111011111 113466777754  45555332                  4567778822 22333


Q ss_pred             eecCCCCcceeEEec-CCCEEEEEEcCCCeEEEEEccCccccccceeeec-CCCCCCceeeCCCCCEEEEeccCCCcccc
Q 019290          196 MYNGLSFPNGVALSN-NNSFLLLAESATLKILRFWLQGERTTYTPQLFAE-MPRFPDNIKSDSKGEFWIAMNSARGKIES  273 (343)
Q Consensus       196 ~~~~~~~~~~i~~~~-d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~G~lwi~~~~~~~~~~~  273 (343)
                      +.........+++.+ ++..++. ...++.|..|+...     ....+.. .......+++.++|.+..+...       
T Consensus       138 ~~~~~~~v~~~~~~~~~~~~l~~-~~~d~~i~i~d~~~-----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d-------  204 (313)
T 3odt_A          138 LQAHNASVWDAKVVSFSENKFLT-ASADKTIKLWQNDK-----VIKTFSGIHNDVVRHLAVVDDGHFISCSND-------  204 (313)
T ss_dssp             EECCSSCEEEEEEEETTTTEEEE-EETTSCEEEEETTE-----EEEEECSSCSSCEEEEEEEETTEEEEEETT-------
T ss_pred             cccCCCceeEEEEccCCCCEEEE-EECCCCEEEEecCc-----eEEEEeccCcccEEEEEEcCCCeEEEccCC-------
Confidence            333445566777777 6765554 45678999998322     1122221 2223445677888885555543       


Q ss_pred             ccccccccccCCCcccCCCeEEEECC-CCCEEEEeeCCCCCccCCceeEEEe-CCEEEEecCCCCeEEEEc
Q 019290          274 NKKTAFCEETAKPWFLRDPVGVKFDV-NGNVVDVLDGNEGNTLNSVSEVQEY-GEYLYTGSSVQPYVVVIK  342 (343)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~~~~i~~~~  342 (343)
                                        +.|..+|. .++.+..+....    ..+..+... +++|+. ......|.+++
T Consensus       205 ------------------g~i~i~d~~~~~~~~~~~~~~----~~i~~~~~~~~~~l~~-~~~dg~v~iwd  252 (313)
T 3odt_A          205 ------------------GLIKLVDMHTGDVLRTYEGHE----SFVYCIKLLPNGDIVS-CGEDRTVRIWS  252 (313)
T ss_dssp             ------------------SEEEEEETTTCCEEEEEECCS----SCEEEEEECTTSCEEE-EETTSEEEEEC
T ss_pred             ------------------CeEEEEECCchhhhhhhhcCC----ceEEEEEEecCCCEEE-EecCCEEEEEE
Confidence                              46667776 466665554322    234444433 444333 33344455443

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=98.51  E-value=9.1e-06  Score=74.01  Aligned_cols=189  Identities=8%  Similarity=0.008  Sum_probs=111.5

Q ss_pred             CCceEEEcCCCC-eeEEE----------ecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEe
Q 019290           36 GPESLAFDCNGE-GPYVG----------VSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFN  104 (343)
Q Consensus        36 ~p~~l~~d~~g~-~l~~~----------~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~  104 (343)
                      ...++++.++|. ++.++          ..++.|..||..++.....                 .........+..++++
T Consensus        14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~-----------------~~~~~~~~~v~~~~~s   76 (416)
T 2pm9_A           14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKP-----------------IASLQVDSKFNDLDWS   76 (416)
T ss_dssp             ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSC-----------------SCCCCCSSCEEEEEEC
T ss_pred             hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcE-----------------EEEEecCCceEEEEEC
Confidence            467888999987 66676          5677889998876431100                 0001123356789999


Q ss_pred             CCCCeEEEEeCCCeEEEEeCCC----C-eEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCC
Q 019290          105 PVTCDLYIADAYFGLMVVGPNG----G-QAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDR  179 (343)
Q Consensus       105 ~~~~~l~v~~~~~gi~~~d~~~----~-~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~  179 (343)
                      +++..|..+.....|..++.++    . ....+ ..    ....+..+++.+.++.++++...                 
T Consensus        77 ~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~-~~----h~~~v~~~~~~~~~~~~l~s~~~-----------------  134 (416)
T 2pm9_A           77 HNNKIIAGALDNGSLELYSTNEANNAINSMARF-SN----HSSSVKTVKFNAKQDNVLASGGN-----------------  134 (416)
T ss_dssp             SSSSCEEEEESSSCEEEECCSSTTSCCCEEEEC-CC----SSSCCCEEEECSSSTTBEEEECS-----------------
T ss_pred             CCCCeEEEEccCCeEEEeecccccccccchhhc-cC----CccceEEEEEcCCCCCEEEEEcC-----------------
Confidence            8444566664334488898876    2 22222 11    12357889999832565554432                 


Q ss_pred             CceEEEEeCCCCc------eE-Ee---ecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecC----
Q 019290          180 SGRLLKYDPLKKN------VT-VM---YNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEM----  245 (343)
Q Consensus       180 ~~~v~~~d~~~~~------~~-~~---~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~----  245 (343)
                      .+.|..||..+++      .. .+   .........+++++++..++++...++.|..|++.....   ...+...    
T Consensus       135 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~---~~~~~~~~~~~  211 (416)
T 2pm9_A          135 NGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKE---VIHLSYTSPNS  211 (416)
T ss_dssp             SSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEE---EEEECCCCCSS
T ss_pred             CCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCc---ceEEecccccc
Confidence            4568888877654      11 11   122345678999998555666667789999999875322   1111111    


Q ss_pred             --CCCCCceeeCCCC-CEEEEecc
Q 019290          246 --PRFPDNIKSDSKG-EFWIAMNS  266 (343)
Q Consensus       246 --~~~p~~i~~d~~G-~lwi~~~~  266 (343)
                        ......++++++| +++++...
T Consensus       212 ~~~~~v~~~~~~~~~~~~l~~~~~  235 (416)
T 2pm9_A          212 GIKQQLSVVEWHPKNSTRVATATG  235 (416)
T ss_dssp             CCCCCEEEEEECSSCTTEEEEEEC
T ss_pred             ccCCceEEEEECCCCCCEEEEEEC
Confidence              2224457788887 55555444

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=98.51  E-value=2.1e-05  Score=69.56  Aligned_cols=226  Identities=13%  Similarity=0.038  Sum_probs=135.6

Q ss_pred             CCceEEEcCCCC-eeEEEecCCEEEEEEc-CCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEE
Q 019290           36 GPESLAFDCNGE-GPYVGVSDGRILKWKA-ANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIA  113 (343)
Q Consensus        36 ~p~~l~~d~~g~-~l~~~~~~g~i~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~  113 (343)
                      ...++++.++++ .++++..++.|..||. .+++...+...                  .....+..+++.+ ++.++.+
T Consensus        58 ~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~------------------~~~~~v~~l~~~~-~~~l~s~  118 (342)
T 1yfq_A           58 PLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNN------------------EANLGICRICKYG-DDKLIAA  118 (342)
T ss_dssp             CEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSC------------------CCCSCEEEEEEET-TTEEEEE
T ss_pred             ceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceEecccc------------------CCCCceEEEEeCC-CCEEEEE
Confidence            577899999999 8999999999999998 87765443210                  0223467899998 7777777


Q ss_pred             eCCCeEEEEeCCC---------CeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEE
Q 019290          114 DAYFGLMVVGPNG---------GQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLL  184 (343)
Q Consensus       114 ~~~~gi~~~d~~~---------~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~  184 (343)
                      .....|..+|.++         ++.  +... .  ....+..+++.+ ++ ++++..                  .+.|.
T Consensus       119 ~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~-~--~~~~v~~~~~~~-~~-l~~~~~------------------d~~i~  173 (342)
T 1yfq_A          119 SWDGLIEVIDPRNYGDGVIAVKNLN--SNNT-K--VKNKIFTMDTNS-SR-LIVGMN------------------NSQVQ  173 (342)
T ss_dssp             ETTSEEEEECHHHHTTBCEEEEESC--SSSS-S--SCCCEEEEEECS-SE-EEEEES------------------TTEEE
T ss_pred             cCCCeEEEEcccccccccccccCCe--eeEE-e--eCCceEEEEecC-Cc-EEEEeC------------------CCeEE
Confidence            6545588888764         221  1111 1  124577888888 35 665433                  45688


Q ss_pred             EEeCCC-Cc--eEEee-cCCCCcceeEEec-CCCEEEEEEcCCCeEEEEEccCc--cc-cccceeeecCC---------C
Q 019290          185 KYDPLK-KN--VTVMY-NGLSFPNGVALSN-NNSFLLLAESATLKILRFWLQGE--RT-TYTPQLFAEMP---------R  247 (343)
Q Consensus       185 ~~d~~~-~~--~~~~~-~~~~~~~~i~~~~-d~~~lyv~~~~~~~i~~~~~~~~--~~-~~~~~~~~~~~---------~  247 (343)
                      .||..+ +.  ..... ........+++++ +++.++++ ..++.|..|+++..  .. ......+....         .
T Consensus       174 i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~-~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (342)
T 1yfq_A          174 WFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACS-SIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAY  252 (342)
T ss_dssp             EEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEE-ETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCC
T ss_pred             EEECCccccccceeeecCCCCceeEEEECCCCCCEEEEE-ecCCcEEEEEEcCCCcccccccceeeecccccccccccce
Confidence            888765 33  22222 2234567889999 88866555 46889999887653  10 01111221111         1


Q ss_pred             CCCceeeCCCCCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECCC-CCEEEEeeCC-CCCccCCceeEEEeC
Q 019290          248 FPDNIKSDSKGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVN-GNVVDVLDGN-EGNTLNSVSEVQEYG  325 (343)
Q Consensus       248 ~p~~i~~d~~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~-g~~~~~~~~~-~~~~~~~~~~~~~~~  325 (343)
                      ....++++++|++.++...                        .+.|..+|.+ ++.+..+... .    ..+..+..++
T Consensus       253 ~i~~~~~s~~~~~l~~~~~------------------------dg~i~vwd~~~~~~~~~~~~~h~----~~v~~~~~~~  304 (342)
T 1yfq_A          253 PVNSIEFSPRHKFLYTAGS------------------------DGIISCWNLQTRKKIKNFAKFNE----DSVVKIACSD  304 (342)
T ss_dssp             CEEEEEECTTTCCEEEEET------------------------TSCEEEEETTTTEEEEECCCCSS----SEEEEEEECS
T ss_pred             eEEEEEEcCCCCEEEEecC------------------------CceEEEEcCccHhHhhhhhcccC----CCceEecCCC
Confidence            2334678888876555544                        3467778864 6655555432 2    2344434445


Q ss_pred             CEEEEecCC
Q 019290          326 EYLYTGSSV  334 (343)
Q Consensus       326 g~l~i~~~~  334 (343)
                      ..|..++.+
T Consensus       305 ~~l~s~s~D  313 (342)
T 1yfq_A          305 NILCLATSD  313 (342)
T ss_dssp             SEEEEEEEC
T ss_pred             CeEEEEecC
Confidence            556555544

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=98.51  E-value=2.4e-05  Score=76.94  Aligned_cols=204  Identities=9%  Similarity=-0.040  Sum_probs=111.5

Q ss_pred             CCceEEEcCCCCeeEEEec---------CCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCC
Q 019290           36 GPESLAFDCNGEGPYVGVS---------DGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPV  106 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~---------~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~  106 (343)
                      .+.+++++|||+.+.++..         .+.++.+|..+++...+....                 .....+..++++++
T Consensus        62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~-----------------~~~~~~~~~~~SPd  124 (723)
T 1xfd_A           62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPE-----------------VSNAKLQYAGWGPK  124 (723)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTT-----------------CCSCCCSBCCBCSS
T ss_pred             ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCc-----------------cccccccccEECCC
Confidence            3789999999996665544         278899999887654442110                 11112456778885


Q ss_pred             CCeEEEEeCCCeEEEEeCCCCeEEEcccccCCCC--------------ccCcceeEEeCCCCe-EEEEeCCcccccccce
Q 019290          107 TCDLYIADAYFGLMVVGPNGGQAQQLASSAGGIP--------------FRFTNDLDIDPNTGI-VYFTDSSIYFQRRQYF  171 (343)
Q Consensus       107 ~~~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~--------------~~~~~~i~~d~~dg~-l~v~~~~~~~~~~~~~  171 (343)
                      +..|.++. ...|+.+|.++++...+........              ......+++.| ||+ |+++.... -....+.
T Consensus       125 G~~la~~~-~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~Sp-Dg~~la~~~~~~-~~~~~~~  201 (723)
T 1xfd_A          125 GQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSP-DGTRLAYAAIND-SRVPIME  201 (723)
T ss_dssp             TTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECT-TSSEEEEEEEEC-TTSCEEE
T ss_pred             CCEEEEEE-CCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECC-CCCEEEEEEECC-CccceEE
Confidence            55676664 4679999998887665533211100              11236789999 576 44432110 0000000


Q ss_pred             e------------eee---ec--CCCceEEEEeCCCCce-EEeecC------CCCcceeEEecCCCEEEEEEcC---CCe
Q 019290          172 M------------SIA---TG--DRSGRLLKYDPLKKNV-TVMYNG------LSFPNGVALSNNNSFLLLAESA---TLK  224 (343)
Q Consensus       172 ~------------~~~---~~--~~~~~v~~~d~~~~~~-~~~~~~------~~~~~~i~~~~d~~~lyv~~~~---~~~  224 (343)
                      .            .+.   .+  .....|+.+|..+++. ..+...      ......++++|||+.++.....   ...
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~  281 (723)
T 1xfd_A          202 LPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSI  281 (723)
T ss_dssp             ECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEE
T ss_pred             eeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEE
Confidence            0            000   00  1123688999887764 333321      1224568899999876444322   257


Q ss_pred             EEEEEccCccccccceeee-c-CCCC----CCceeeCCCCC-EEEE
Q 019290          225 ILRFWLQGERTTYTPQLFA-E-MPRF----PDNIKSDSKGE-FWIA  263 (343)
Q Consensus       225 i~~~~~~~~~~~~~~~~~~-~-~~~~----p~~i~~d~~G~-lwi~  263 (343)
                      |+.+++.+.    +..... . ..+.    +..+++++||+ |+++
T Consensus       282 i~~~d~~~g----~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~  323 (723)
T 1xfd_A          282 LTLCDATTG----VCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFI  323 (723)
T ss_dssp             EEEEETTTC----CEEEEEEEECSSCCCCCCCCCEECTTSCSEEEE
T ss_pred             EEEEeCCCC----cceEEEEeccCCEEeccCCCceEcCCCCeEEEE
Confidence            888887652    222221 1 1121    23678889986 5444

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.48  E-value=7e-06  Score=74.31  Aligned_cols=213  Identities=8%  Similarity=-0.072  Sum_probs=117.8

Q ss_pred             ccccccccCCC------CCCCceEEEcCCCCeeEEEec--CCEEEE--EEcCCCCeEEeeecCC---Ccc-----ccccC
Q 019290           23 SKSYQQLQLPG------VVGPESLAFDCNGEGPYVGVS--DGRILK--WKAANSGWTEFATTAP---HRA-----REICD   84 (343)
Q Consensus        23 ~~~~~~~~~~~------~~~p~~l~~d~~g~~l~~~~~--~g~i~~--~d~~~~~~~~~~~~~~---~~~-----~~~~~   84 (343)
                      .+..+++.+|+      ...|+++++++||+.+|++..  ...+..  +|..+  ...+.....   .+.     ...|.
T Consensus       106 ~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t--v~~i~v~~~~~~~p~g~~~~~~~~~  183 (368)
T 1mda_H          106 FLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD--DQLTKSASCFHIHPGAAATHYLGSC  183 (368)
T ss_dssp             CCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE--EEEEECSSCCCCEEEETTEEECCCC
T ss_pred             CCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh--ceEEECCCceEEccCCCeEEEEEcC
Confidence            45567777762      247999999999998998754  345666  67755  333321000   000     00000


Q ss_pred             -CC-------C-----Ccc------cCCCcCCeeeEEEeCCCCeEEEEeCCCeEEEEeCCCCeEEEccc--ccCC---CC
Q 019290           85 -GS-------T-----NTT------LEPLCGRPLGIKFNPVTCDLYIADAYFGLMVVGPNGGQAQQLAS--SAGG---IP  140 (343)
Q Consensus        85 -~~-------~-----~~~------~~~~~~~p~gi~~~~~~~~l~v~~~~~gi~~~d~~~~~~~~~~~--~~~~---~~  140 (343)
                       +.       .     .+.      .......|.  . .+.++.+|+.+. +.++.+|..++..+....  ....   ..
T Consensus       184 dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~--~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~  259 (368)
T 1mda_H          184 PASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA--Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKAD  259 (368)
T ss_dssp             TTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE--E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHT
T ss_pred             CCCEEEEECccccccCCeEEEEeeeeeeCCCCcc--c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEecccccccc
Confidence             00       0     000      000111233  3 443667777766 669999987543332211  1000   00


Q ss_pred             ccCcce---eEEeCCCCeEEEEeC---CcccccccceeeeeecCCCceEEEEeCCCCceEEeecCCCCcceeEEecCCCE
Q 019290          141 FRFTND---LDIDPNTGIVYFTDS---SIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSF  214 (343)
Q Consensus       141 ~~~~~~---i~~d~~dg~l~v~~~---~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~i~~~~d~~~  214 (343)
                      ...+.+   +++++..+++|++..   ....           .. .+.+..+|.++++...-..-...|.++++++|++.
T Consensus       260 ~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~-----------~~-~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~  327 (368)
T 1mda_H          260 NFRSAGFQMVAKLKNTDGIMILTVEHSRSCL-----------AA-AENTSSVTASVGQTSGPISNGHDSDAIIAAQDGAS  327 (368)
T ss_dssp             TEEECSSSCEEEETTTTEEEEEEEECSSCTT-----------SC-EEEEEEEESSSCCEEECCEEEEEECEEEECCSSSC
T ss_pred             ccccCcceeeEEcCCCCEEEEEeccccCccc-----------cc-CCCEEEEECCCCeEEEEEECCCCcceEEECCCCCE
Confidence            112222   778884467998653   1000           00 13466899988776543333346999999999998


Q ss_pred             EEEEEc-CCCeEEEEEccCccccccceeeecCCCCCCceeeCCC
Q 019290          215 LLLAES-ATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSK  257 (343)
Q Consensus       215 lyv~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~  257 (343)
                      +|++.. ..+.|.++|+.+...   .+.+ .....|.++++..+
T Consensus       328 l~va~~~~~~~VsVID~~t~kv---v~~I-~vg~~P~~i~~~~~  367 (368)
T 1mda_H          328 DNYANSAGTEVLDIYDAASDQD---QSSV-ELDKGPESLSVQNE  367 (368)
T ss_dssp             EEEEEETTTTEEEEEESSSCEE---EEEC-CCCSCCCEEECCCC
T ss_pred             EEEEccCCCCeEEEEECCCCcE---EEEE-ECCCCCCEEEeecC
Confidence            888887 689999999875221   1122 23456889887653

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=98.47  E-value=0.0001  Score=64.58  Aligned_cols=189  Identities=13%  Similarity=0.064  Sum_probs=104.3

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCC--eEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCC--CCeEE
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSG--WTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPV--TCDLY  111 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~--~~~l~  111 (343)
                      ...+++++++|+.+.++..++.|..||..++.  ......                 .......+..+++.+.  +..|.
T Consensus        13 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-----------------~~~~~~~v~~~~~~~~~d~~~l~   75 (351)
T 3f3f_A           13 LVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDS-----------------WRAHDSSIVAIDWASPEYGRIIA   75 (351)
T ss_dssp             CEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEE-----------------EECCSSCEEEEEECCGGGCSEEE
T ss_pred             ceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecce-----------------eccCCCcEEEEEEcCCCCCCEEE
Confidence            57899999999988888899999999987542  111110                 0122234678888873  34555


Q ss_pred             EEeCCCeEEEEeCCCCeE-------EEcccccCCCCccCcceeEEeCCC--CeEEEEeCCcccccccceeeeeecCCCce
Q 019290          112 IADAYFGLMVVGPNGGQA-------QQLASSAGGIPFRFTNDLDIDPNT--GIVYFTDSSIYFQRRQYFMSIATGDRSGR  182 (343)
Q Consensus       112 v~~~~~gi~~~d~~~~~~-------~~~~~~~~~~~~~~~~~i~~d~~d--g~l~v~~~~~~~~~~~~~~~~~~~~~~~~  182 (343)
                      .+.....|..+|.++++.       +.+.... . ....+..+++.+ +  +.+.++...                 .+.
T Consensus        76 s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~-~-~~~~v~~~~~~~-~~~~~~l~~~~~-----------------dg~  135 (351)
T 3f3f_A           76 SASYDKTVKLWEEDPDQEECSGRRWNKLCTLN-D-SKGSLYSVKFAP-AHLGLKLACLGN-----------------DGI  135 (351)
T ss_dssp             EEETTSCEEEEEECTTSCTTSSCSEEEEEEEC-C-CSSCEEEEEECC-GGGCSEEEEEET-----------------TCE
T ss_pred             EEcCCCeEEEEecCCCcccccccCcceeeeec-c-cCCceeEEEEcC-CCCCcEEEEecC-----------------CCc
Confidence            554333488888876531       1111111 1 123577888988 5  555543322                 456


Q ss_pred             EEEEeCCCCceEE-e-------------ecCCCCcceeEEecC---CCEEEEEEcCCCeEEEEEccCccccccceeeecC
Q 019290          183 LLKYDPLKKNVTV-M-------------YNGLSFPNGVALSNN---NSFLLLAESATLKILRFWLQGERTTYTPQLFAEM  245 (343)
Q Consensus       183 v~~~d~~~~~~~~-~-------------~~~~~~~~~i~~~~d---~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~  245 (343)
                      |..||..+++... +             .........++++++   +..+.++ ..++.+..+....    .........
T Consensus       136 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~~~~~~~~~~----~~~~~~~~~  210 (351)
T 3f3f_A          136 LRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVS-ALEQAIIYQRGKD----GKLHVAAKL  210 (351)
T ss_dssp             EEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEE-ETTEEEEEEECTT----SCEEEEEEC
T ss_pred             EEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEe-cCCCcEEEEccCC----Cceeeeeec
Confidence            8888866544210 0             012234567888886   6655554 4455664444332    121112222


Q ss_pred             CC---CCCceeeCCCC----CEEEEecc
Q 019290          246 PR---FPDNIKSDSKG----EFWIAMNS  266 (343)
Q Consensus       246 ~~---~p~~i~~d~~G----~lwi~~~~  266 (343)
                      .+   ....+++.++|    +++++...
T Consensus       211 ~~h~~~i~~~~~~p~~~~~~~~l~s~~~  238 (351)
T 3f3f_A          211 PGHKSLIRSISWAPSIGRWYQLIATGCK  238 (351)
T ss_dssp             CCCCSCEEEEEECCCSSCSSEEEEEEET
T ss_pred             CCCCcceeEEEECCCCCCcceEEEEEcC
Confidence            22   23446778876    55555444

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=98.46  E-value=2e-05  Score=78.38  Aligned_cols=192  Identities=13%  Similarity=0.108  Sum_probs=113.5

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCC--CCeEEEE
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPV--TCDLYIA  113 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~--~~~l~v~  113 (343)
                      ...+++++++|+.+.++..+|.|..||..++........                 ......+..+++.++  ++.|..+
T Consensus        11 ~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l-----------------~~h~~~V~~l~~s~~~~~~~l~s~   73 (753)
T 3jro_A           11 LIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTL-----------------TGHEGPVWRVDWAHPKFGTILASC   73 (753)
T ss_dssp             CEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEE-----------------CCCSSCEEEEEECCTTSCSEEEEE
T ss_pred             eeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceec-----------------cCCcCceEEEEecCCCCCCEEEEE
Confidence            467889999999888888999999998764433322110                 122234678888773  3345555


Q ss_pred             eCCCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCC--CeEEEEeCCcccccccceeeeeecCCCceEEEEeCCC
Q 019290          114 DAYFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNT--GIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLK  190 (343)
Q Consensus       114 ~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~d--g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~  190 (343)
                      . .+| |..+|.++++.........  ....+..+++.+ +  +.++++...                 .+.|..||..+
T Consensus        74 s-~Dg~I~vwd~~~~~~~~~~~~~~--h~~~V~~v~~sp-~~~~~~l~sgs~-----------------dg~I~vwdl~~  132 (753)
T 3jro_A           74 S-YDGKVLIWKEENGRWSQIAVHAV--HSASVNSVQWAP-HEYGPLLLVASS-----------------DGKVSVVEFKE  132 (753)
T ss_dssp             E-TTSCEEEEEEETTEEEEEEEECC--CSSCEEEEEECC-GGGCSEEEEEET-----------------TSEEEEEECCS
T ss_pred             e-CCCeEEEEECCCCcccccccccC--CCCCeEEEEECC-CCCCCEEEEEeC-----------------CCcEEEEEeec
Confidence            4 445 8899988876433322111  124578889988 5  555554322                 46688888765


Q ss_pred             Cc---eEEeecCCCCcceeEEec-------------CCCEEEEEEcCCCeEEEEEccCccccccc-eeeecCCCCCCcee
Q 019290          191 KN---VTVMYNGLSFPNGVALSN-------------NNSFLLLAESATLKILRFWLQGERTTYTP-QLFAEMPRFPDNIK  253 (343)
Q Consensus       191 ~~---~~~~~~~~~~~~~i~~~~-------------d~~~lyv~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~p~~i~  253 (343)
                      +.   ...+.........+++++             ++..++ +...++.|..|++......... ..+....+....++
T Consensus       133 ~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~-sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~  211 (753)
T 3jro_A          133 NGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFV-TGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVA  211 (753)
T ss_dssp             SSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEE-EEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEE
T ss_pred             CCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEE-EEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEE
Confidence            52   222333344567888887             466554 4456789999998753210111 11111122234567


Q ss_pred             eCCC---CCEEEEecc
Q 019290          254 SDSK---GEFWIAMNS  266 (343)
Q Consensus       254 ~d~~---G~lwi~~~~  266 (343)
                      +.++   |++.++...
T Consensus       212 ~sp~~~~~~~l~s~s~  227 (753)
T 3jro_A          212 WSPTVLLRSYLASVSQ  227 (753)
T ss_dssp             ECCCCSSSEEEEEEES
T ss_pred             eccCCCCCCEEEEEec
Confidence            7888   776666554

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=98.45  E-value=0.00022  Score=63.45  Aligned_cols=189  Identities=8%  Similarity=-0.018  Sum_probs=108.9

Q ss_pred             CCceEEE-----cC-CCCeeEEEecCCEEEEEEcCCCCe----EEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeC
Q 019290           36 GPESLAF-----DC-NGEGPYVGVSDGRILKWKAANSGW----TEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNP  105 (343)
Q Consensus        36 ~p~~l~~-----d~-~g~~l~~~~~~g~i~~~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~  105 (343)
                      ...++++     .+ ++..+.++..++.|..||..+.+.    ....                .........+..+++++
T Consensus        23 ~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~----------------~~l~~h~~~V~~~~~~~   86 (343)
T 2xzm_R           23 WVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPH----------------KALTGHNHFVSDLALSQ   86 (343)
T ss_dssp             CEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEE----------------EEECCCSSCEEEEEECS
T ss_pred             hhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCccccccccc----------------chhccCCCceEEEEECC
Confidence            3567777     55 888888888999999998764321    0000                00012223467889998


Q ss_pred             CCCeEEEEeCCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEE
Q 019290          106 VTCDLYIADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLK  185 (343)
Q Consensus       106 ~~~~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~  185 (343)
                      ++..+..+.....|..+|.++++........    ...+..+++.+ +++..++...                 .+.|..
T Consensus        87 ~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h----~~~v~~v~~sp-~~~~l~s~~~-----------------d~~i~~  144 (343)
T 2xzm_R           87 ENCFAISSSWDKTLRLWDLRTGTTYKRFVGH----QSEVYSVAFSP-DNRQILSAGA-----------------EREIKL  144 (343)
T ss_dssp             STTEEEEEETTSEEEEEETTSSCEEEEEECC----CSCEEEEEECS-STTEEEEEET-----------------TSCEEE
T ss_pred             CCCEEEEEcCCCcEEEEECCCCcEEEEEcCC----CCcEEEEEECC-CCCEEEEEcC-----------------CCEEEE
Confidence            3334444543344889999887644322221    13578899999 5776654432                 456777


Q ss_pred             EeCCCCceEEee---cCCCCcceeEEecCCC---------EEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCcee
Q 019290          186 YDPLKKNVTVMY---NGLSFPNGVALSNNNS---------FLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIK  253 (343)
Q Consensus       186 ~d~~~~~~~~~~---~~~~~~~~i~~~~d~~---------~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~  253 (343)
                      ||..........   ........+++++++.         .++++...++.|..|+...    .....+.........++
T Consensus       145 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~----~~~~~~~~h~~~v~~~~  220 (343)
T 2xzm_R          145 WNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF----QIRYTFKAHESNVNHLS  220 (343)
T ss_dssp             EESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT----EEEEEEECCSSCEEEEE
T ss_pred             EeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC----ceeEEEcCccccceEEE
Confidence            776533322222   1223356677777652         2455556789999999433    11122222222244577


Q ss_pred             eCCCCCEEEEecc
Q 019290          254 SDSKGEFWIAMNS  266 (343)
Q Consensus       254 ~d~~G~lwi~~~~  266 (343)
                      ++++|++.++...
T Consensus       221 ~s~~g~~l~sgs~  233 (343)
T 2xzm_R          221 ISPNGKYIATGGK  233 (343)
T ss_dssp             ECTTSSEEEEEET
T ss_pred             ECCCCCEEEEEcC
Confidence            8999987776554

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=98.44  E-value=0.00015  Score=71.10  Aligned_cols=190  Identities=9%  Similarity=-0.004  Sum_probs=113.8

Q ss_pred             CCceEEEcCCC-CeeEEEecCCEEEEEEcCCCCe--EEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEE
Q 019290           36 GPESLAFDCNG-EGPYVGVSDGRILKWKAANSGW--TEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYI  112 (343)
Q Consensus        36 ~p~~l~~d~~g-~~l~~~~~~g~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v  112 (343)
                      ...+|++.+++ +++.++..++.|..|+..+...  ....                .........+..+++++++..|..
T Consensus       384 ~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~----------------~~~~~h~~~v~~v~~s~~g~~l~s  447 (694)
T 3dm0_A          384 MVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQ----------------RRLTGHSHFVEDVVLSSDGQFALS  447 (694)
T ss_dssp             CEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEE----------------EEEECCSSCEEEEEECTTSSEEEE
T ss_pred             eeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccccccc----------------ceecCCCCcEEEEEECCCCCEEEE
Confidence            36788888764 6677888999999998764321  0000                000122234678899984444555


Q ss_pred             EeCCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCc
Q 019290          113 ADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKN  192 (343)
Q Consensus       113 ~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~  192 (343)
                      +.....|..+|..+++........    ...+.++++.+ +++..++...                 .+.|..+|..+..
T Consensus       448 gs~Dg~v~vwd~~~~~~~~~~~~h----~~~v~~~~~s~-~~~~l~s~s~-----------------D~~i~iwd~~~~~  505 (694)
T 3dm0_A          448 GSWDGELRLWDLAAGVSTRRFVGH----TKDVLSVAFSL-DNRQIVSASR-----------------DRTIKLWNTLGEC  505 (694)
T ss_dssp             EETTSEEEEEETTTTEEEEEEECC----SSCEEEEEECT-TSSCEEEEET-----------------TSCEEEECTTSCE
T ss_pred             EeCCCcEEEEECCCCcceeEEeCC----CCCEEEEEEeC-CCCEEEEEeC-----------------CCEEEEEECCCCc
Confidence            543344899999887654332221    13478899999 5776665433                 4567778865443


Q ss_pred             eEEeec----CCCCcceeEEecCCC-EEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEecc
Q 019290          193 VTVMYN----GLSFPNGVALSNNNS-FLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNS  266 (343)
Q Consensus       193 ~~~~~~----~~~~~~~i~~~~d~~-~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~~  266 (343)
                      ...+..    .......+++++++. .++++...++.|..|++.....   ...+....+....++++++|++.++...
T Consensus       506 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~---~~~~~~h~~~v~~v~~spdg~~l~sg~~  581 (694)
T 3dm0_A          506 KYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKL---RSTLAGHTGYVSTVAVSPDGSLCASGGK  581 (694)
T ss_dssp             EEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCE---EEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             ceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcE---EEEEcCCCCCEEEEEEeCCCCEEEEEeC
Confidence            333322    122357788888763 3556666789999999865221   1122112223445788999988777655

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=98.43  E-value=0.00011  Score=65.28  Aligned_cols=99  Identities=14%  Similarity=0.096  Sum_probs=65.2

Q ss_pred             CCceEEEcCC---CCeeEEEecCCEEEEEEcCC-CCeE-EeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeE
Q 019290           36 GPESLAFDCN---GEGPYVGVSDGRILKWKAAN-SGWT-EFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDL  110 (343)
Q Consensus        36 ~p~~l~~d~~---g~~l~~~~~~g~i~~~d~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l  110 (343)
                      ...++++.++   |+.++++..++.|..||..+ +... ....                   .....+..+++++++..|
T Consensus        41 ~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-------------------~h~~~v~~~~~~~~~~~l  101 (368)
T 3mmy_A           41 SIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQ-------------------MHTGPVLDVCWSDDGSKV  101 (368)
T ss_dssp             CEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEE-------------------ECSSCEEEEEECTTSSEE
T ss_pred             ceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEec-------------------cccCCEEEEEECcCCCEE
Confidence            5789999999   58788888999999999876 3322 1110                   122346789999844456


Q ss_pred             EEEeCCCeEEEEeCCCCeEEEcccccCCCCccCcceeEE--eCCCCeEEEE
Q 019290          111 YIADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDI--DPNTGIVYFT  159 (343)
Q Consensus       111 ~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~--d~~dg~l~v~  159 (343)
                      +.+.....|..+|.++++...+.. .    ...+..+++  .+ ++.++++
T Consensus       102 ~s~~~dg~v~iwd~~~~~~~~~~~-~----~~~v~~~~~~~~~-~~~~l~~  146 (368)
T 3mmy_A          102 FTASCDKTAKMWDLSSNQAIQIAQ-H----DAPVKTIHWIKAP-NYSCVMT  146 (368)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEE-C----SSCEEEEEEEECS-SCEEEEE
T ss_pred             EEEcCCCcEEEEEcCCCCceeecc-c----cCceEEEEEEeCC-CCCEEEE
Confidence            666544449999999887665422 1    134677777  77 4665554

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=98.41  E-value=5.4e-05  Score=76.81  Aligned_cols=183  Identities=11%  Similarity=0.028  Sum_probs=116.7

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      ...+++++++|+++.++..+|.|..|+..+.+.....                    .....+..+++.+ +..|..+..
T Consensus        19 ~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~--------------------~~~~~V~~l~fsp-g~~L~S~s~   77 (902)
T 2oaj_A           19 KPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKL--------------------EDRSAIKEMRFVK-GIYLVVINA   77 (902)
T ss_dssp             CEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEEC--------------------SSCCCEEEEEEET-TTEEEEEET
T ss_pred             CcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEc--------------------CCCCCEEEEEEcC-CCEEEEEEC
Confidence            5789999999998888999999999987765432211                    1123467899998 555666654


Q ss_pred             CCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEE
Q 019290          116 YFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTV  195 (343)
Q Consensus       116 ~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~  195 (343)
                      ...|..+|.++++...... .    ...+..+++++. +...++...                 .+.|..||.++++...
T Consensus        78 D~~v~lWd~~~~~~~~~~~-~----~~~V~~v~~sp~-g~~l~sgs~-----------------dg~V~lwd~~~~~~~~  134 (902)
T 2oaj_A           78 KDTVYVLSLYSQKVLTTVF-V----PGKITSIDTDAS-LDWMLIGLQ-----------------NGSMIVYDIDRDQLSS  134 (902)
T ss_dssp             TCEEEEEETTTCSEEEEEE-C----SSCEEEEECCTT-CSEEEEEET-----------------TSCEEEEETTTTEEEE
T ss_pred             cCeEEEEECCCCcEEEEEc-C----CCCEEEEEECCC-CCEEEEEcC-----------------CCcEEEEECCCCcccc
Confidence            4559999998776432221 1    134788999994 665443322                 4678888887766431


Q ss_pred             e------------ecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecC------------------
Q 019290          196 M------------YNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEM------------------  245 (343)
Q Consensus       196 ~------------~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~------------------  245 (343)
                      +            .........++++|++..+.++...++.| .|++.....   ...+...                  
T Consensus       135 ~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~h  210 (902)
T 2oaj_A          135 FKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEI---KQSFIYELPPFAPGGDFSEKTNEKR  210 (902)
T ss_dssp             EEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEE---EEEECCCBCTTCCCSTTCCCTTSCB
T ss_pred             ceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCce---EEEEecccCCcCCCccccccccccc
Confidence            1            11223567899999754455566678888 999875322   1111100                  


Q ss_pred             CCCCCceeeCCCCCEEEEecc
Q 019290          246 PRFPDNIKSDSKGEFWIAMNS  266 (343)
Q Consensus       246 ~~~p~~i~~d~~G~lwi~~~~  266 (343)
                      ......+++.++|++.++...
T Consensus       211 ~~~V~~v~fspdg~~lasgs~  231 (902)
T 2oaj_A          211 TPKVIQSLYHPNSLHIITIHE  231 (902)
T ss_dssp             CCCEEEEEECTTSSEEEEEET
T ss_pred             CCCeEEEEEcCCCCEEEEEEC
Confidence            011234677899987777665

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=98.41  E-value=3.1e-05  Score=71.49  Aligned_cols=197  Identities=11%  Similarity=0.043  Sum_probs=119.2

Q ss_pred             CCceEEEcCCCC-eeEEEecCCEEEEEEcCCCCe--EEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEE
Q 019290           36 GPESLAFDCNGE-GPYVGVSDGRILKWKAANSGW--TEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYI  112 (343)
Q Consensus        36 ~p~~l~~d~~g~-~l~~~~~~g~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v  112 (343)
                      .+.++++.+++. .+.++..+|.|..|+..+...  ..+...              .........+..+++++.++.+++
T Consensus       183 ~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~--------------~~~~~h~~~v~~v~~~p~~~~~l~  248 (430)
T 2xyi_A          183 EGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAK--------------NIFTGHTAVVEDVAWHLLHESLFG  248 (430)
T ss_dssp             CCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECS--------------EEECCCSSCEEEEEECSSCTTEEE
T ss_pred             CeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccc--------------eeecCCCCCEeeeEEeCCCCCEEE
Confidence            468999999987 788888999999999876321  000000              000122334678999884555555


Q ss_pred             EeCCC-eEEEEeCCCCeE-EEcccccCCCCccCcceeEEeCCCCe-EEEEeCCcccccccceeeeeecCCCceEEEEeCC
Q 019290          113 ADAYF-GLMVVGPNGGQA-QQLASSAGGIPFRFTNDLDIDPNTGI-VYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPL  189 (343)
Q Consensus       113 ~~~~~-gi~~~d~~~~~~-~~~~~~~~~~~~~~~~~i~~d~~dg~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~  189 (343)
                      +.... .|..+|.+++.. +.+... . .....++.+++.+. +. ++++...                 .+.|..||..
T Consensus       249 s~~~dg~i~i~d~~~~~~~~~~~~~-~-~~~~~v~~i~~~p~-~~~~l~tg~~-----------------dg~v~vwd~~  308 (430)
T 2xyi_A          249 SVADDQKLMIWDTRNNNTSKPSHTV-D-AHTAEVNCLSFNPY-SEFILATGSA-----------------DKTVALWDLR  308 (430)
T ss_dssp             EEETTSEEEEEETTCSCSSSCSEEE-E-CCSSCEEEEEECSS-CTTEEEEEET-----------------TSEEEEEETT
T ss_pred             EEeCCCeEEEEECCCCCCCcceeEe-e-cCCCCeEEEEeCCC-CCCEEEEEeC-----------------CCeEEEEeCC
Confidence            43444 499999986521 111111 0 11245788999994 65 5654332                 4678888876


Q ss_pred             CC-c-eEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccc--------cceeeecC---CCCCCceeeCC
Q 019290          190 KK-N-VTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTY--------TPQLFAEM---PRFPDNIKSDS  256 (343)
Q Consensus       190 ~~-~-~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~--------~~~~~~~~---~~~p~~i~~d~  256 (343)
                      .. . +..+.........++++++++.++++....+.|..|++.......        ..+.+...   ...+..+++++
T Consensus       309 ~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p  388 (430)
T 2xyi_A          309 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNP  388 (430)
T ss_dssp             CTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECS
T ss_pred             CCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECC
Confidence            42 2 334444445678899999998788887788999999986521100        01122111   22355678889


Q ss_pred             CCC-EEEEecc
Q 019290          257 KGE-FWIAMNS  266 (343)
Q Consensus       257 ~G~-lwi~~~~  266 (343)
                      +|. ++++...
T Consensus       389 ~~~~~l~s~s~  399 (430)
T 2xyi_A          389 NEPWIICSVSE  399 (430)
T ss_dssp             SSTTEEEEEET
T ss_pred             CCCCEEEEEEC
Confidence            887 6666554

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=98.41  E-value=0.00018  Score=62.61  Aligned_cols=157  Identities=13%  Similarity=0.048  Sum_probs=93.5

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCC---eEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCC-CCe-E
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSG---WTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPV-TCD-L  110 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~-~~~-l  110 (343)
                      ...+++++++|+.+.++..++.|..||..+..   ...+                    ......+..+++.++ ++. |
T Consensus        11 ~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l--------------------~gH~~~V~~v~~s~~~~g~~l   70 (297)
T 2pm7_B           11 MIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTL--------------------TGHEGPVWRVDWAHPKFGTIL   70 (297)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEE--------------------CCCSSCEEEEEECCGGGCSEE
T ss_pred             ceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEE--------------------ccccCCeEEEEecCCCcCCEE
Confidence            45789999999988888899999999876432   1122                    122234677888642 244 4


Q ss_pred             EEEeCCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCC--CeEEEEeCCcccccccceeeeeecCCCceEEEEeC
Q 019290          111 YIADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNT--GIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDP  188 (343)
Q Consensus       111 ~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~d--g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~  188 (343)
                      ..+.....|..+|.++++...+... .. ....++.+++.+ +  |.+.++...                 .+.|..+|.
T Consensus        71 ~s~s~D~~v~iWd~~~~~~~~~~~~-~~-h~~~v~~v~~~p-~~~g~~l~s~s~-----------------d~~v~~wd~  130 (297)
T 2pm7_B           71 ASCSYDGKVMIWKEENGRWSQIAVH-AV-HSASVNSVQWAP-HEYGPMLLVASS-----------------DGKVSVVEF  130 (297)
T ss_dssp             EEEETTTEEEEEEBSSSCBCCCEEE-CC-CSSCEEEEEECC-GGGCSEEEEEET-----------------TSEEEEEEB
T ss_pred             EEEcCCCEEEEEEcCCCceEEEEEe-ec-CCCceeEEEeCc-CCCCcEEEEEEC-----------------CCcEEEEEe
Confidence            4444334488899887643222111 11 113577888887 3  555553322                 455666776


Q ss_pred             CCCc---eEEeecCCCCcceeEEecCC------------CEEEEEEcCCCeEEEEEccC
Q 019290          189 LKKN---VTVMYNGLSFPNGVALSNNN------------SFLLLAESATLKILRFWLQG  232 (343)
Q Consensus       189 ~~~~---~~~~~~~~~~~~~i~~~~d~------------~~lyv~~~~~~~i~~~~~~~  232 (343)
                      .++.   ...+.........++++|++            ..++++...++.|..|++..
T Consensus       131 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~  189 (297)
T 2pm7_B          131 KENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS  189 (297)
T ss_dssp             CSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEET
T ss_pred             cCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcC
Confidence            5432   22233333456677887752            22455666788999999865

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=98.40  E-value=5.9e-05  Score=66.87  Aligned_cols=185  Identities=13%  Similarity=-0.002  Sum_probs=104.9

Q ss_pred             CCceEEEcCCCCeeE-EEec---CCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCC---CC
Q 019290           36 GPESLAFDCNGEGPY-VGVS---DGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPV---TC  108 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~-~~~~---~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~---~~  108 (343)
                      ...++++.+++..+. ++..   ++.|..||..+++.......                  .....+..+++.++   +.
T Consensus        20 ~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~------------------~~~~~v~~~~~~~~~~~~~   81 (357)
T 3i2n_A           20 TVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREI------------------EKAKPIKCGTFGATSLQQR   81 (357)
T ss_dssp             CEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEE------------------EESSCEEEEECTTCCTTTC
T ss_pred             ceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeee------------------cccCcEEEEEEcCCCCCCc
Confidence            578999999997555 4444   88999999988765433210                  11224567888884   25


Q ss_pred             eEEEEeCCCeEEEEeCCCCe--EEEcccccCCCCccCccee------EEeCCCCeEEEEeCCcccccccceeeeeecCCC
Q 019290          109 DLYIADAYFGLMVVGPNGGQ--AQQLASSAGGIPFRFTNDL------DIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRS  180 (343)
Q Consensus       109 ~l~v~~~~~gi~~~d~~~~~--~~~~~~~~~~~~~~~~~~i------~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~  180 (343)
                      .|+.+.....|..+|.++++  ...+ ...    ...+..+      ++.+ ++.+.++...                 .
T Consensus        82 ~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~----~~~v~~~~~~~~~~~s~-~~~~l~~~~~-----------------d  138 (357)
T 3i2n_A           82 YLATGDFGGNLHIWNLEAPEMPVYSV-KGH----KEIINAIDGIGGLGIGE-GAPEIVTGSR-----------------D  138 (357)
T ss_dssp             CEEEEETTSCEEEECTTSCSSCSEEE-CCC----SSCEEEEEEESGGGCC--CCCEEEEEET-----------------T
T ss_pred             eEEEecCCCeEEEEeCCCCCccEEEE-Eec----ccceEEEeeccccccCC-CccEEEEEeC-----------------C
Confidence            56666544449999988765  2222 111    1234555      3456 4665554332                 4


Q ss_pred             ceEEEEeCCCCc--eEEeecCC----CCcceeE----EecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCC
Q 019290          181 GRLLKYDPLKKN--VTVMYNGL----SFPNGVA----LSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPD  250 (343)
Q Consensus       181 ~~v~~~d~~~~~--~~~~~~~~----~~~~~i~----~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~  250 (343)
                      +.|..||..+++  ...+....    .....++    +++++..++.+ ..++.|..|++...    .............
T Consensus       139 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~----~~~~~~~~~~~v~  213 (357)
T 3i2n_A          139 GTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAG-YDNGDIKLFDLRNM----ALRWETNIKNGVC  213 (357)
T ss_dssp             SCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEE-ETTSEEEEEETTTT----EEEEEEECSSCEE
T ss_pred             CeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEE-ccCCeEEEEECccC----ceeeecCCCCceE
Confidence            568888877654  23322111    1234455    56788766554 46789999998752    2222222233345


Q ss_pred             ceeeCC---CCCEEEEecc
Q 019290          251 NIKSDS---KGEFWIAMNS  266 (343)
Q Consensus       251 ~i~~d~---~G~lwi~~~~  266 (343)
                      .+++++   +++..++...
T Consensus       214 ~~~~~~~~~~~~~l~~~~~  232 (357)
T 3i2n_A          214 SLEFDRKDISMNKLVATSL  232 (357)
T ss_dssp             EEEESCSSSSCCEEEEEES
T ss_pred             EEEcCCCCCCCCEEEEECC
Confidence            677887   7766665544

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=98.40  E-value=6.6e-05  Score=77.38  Aligned_cols=151  Identities=13%  Similarity=0.079  Sum_probs=97.4

Q ss_pred             CceEEEcCCCCeeEEEecCCEEE-EEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           37 PESLAFDCNGEGPYVGVSDGRIL-KWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        37 p~~l~~d~~g~~l~~~~~~g~i~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      +.++++. +|+.+++...+.+++ .++..+++...+.                    .....+..+++++++..|.++..
T Consensus       340 ~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~--------------------~~~~~~~~~~~SpDG~~la~~~~  398 (1045)
T 1k32_A          340 YVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFE--------------------ENLGNVFAMGVDRNGKFAVVAND  398 (1045)
T ss_dssp             EEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECC--------------------CCCCSEEEEEECTTSSEEEEEET
T ss_pred             EEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEec--------------------CCccceeeeEECCCCCEEEEECC
Confidence            4567778 887666655677888 8888776554432                    12234678899995556777765


Q ss_pred             CCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEE
Q 019290          116 YFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTV  195 (343)
Q Consensus       116 ~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~  195 (343)
                      ...++.+|.++++.+.+.....    ..+..+++.| ||+..+......    ++.+   .......|+.+|.++++...
T Consensus       399 ~~~v~~~d~~tg~~~~~~~~~~----~~v~~~~~Sp-DG~~la~~~~~~----~~~~---~~~~~~~i~l~d~~~g~~~~  466 (1045)
T 1k32_A          399 RFEIMTVDLETGKPTVIERSRE----AMITDFTISD-NSRFIAYGFPLK----HGET---DGYVMQAIHVYDMEGRKIFA  466 (1045)
T ss_dssp             TSEEEEEETTTCCEEEEEECSS----SCCCCEEECT-TSCEEEEEEEEC----SSTT---CSCCEEEEEEEETTTTEEEE
T ss_pred             CCeEEEEECCCCceEEeccCCC----CCccceEECC-CCCeEEEEecCc----cccc---cCCCCCeEEEEECCCCcEEE
Confidence            5569999999988776542221    2357889999 577443221100    0000   00113469999998887666


Q ss_pred             eecCCCCcceeEEecCCCEEEEEEc
Q 019290          196 MYNGLSFPNGVALSNNNSFLLLAES  220 (343)
Q Consensus       196 ~~~~~~~~~~i~~~~d~~~lyv~~~  220 (343)
                      +.........+++++||+.||+...
T Consensus       467 l~~~~~~~~~~~~spdG~~l~~~s~  491 (1045)
T 1k32_A          467 ATTENSHDYAPAFDADSKNLYYLSY  491 (1045)
T ss_dssp             CSCSSSBEEEEEECTTSCEEEEEES
T ss_pred             eeCCCcccCCceEcCCCCEEEEEec
Confidence            5555555677899999999988764

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.40  E-value=1.3e-05  Score=72.48  Aligned_cols=185  Identities=11%  Similarity=0.027  Sum_probs=104.2

Q ss_pred             eEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeee--E---------------
Q 019290           39 SLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLG--I---------------  101 (343)
Q Consensus        39 ~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g--i---------------  101 (343)
                      .+.++++|+.+++...++.|+.+|..+++...+......                  ..+.|  +               
T Consensus        85 ~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~------------------~~~~g~~l~~~~~~~~~~~~~~~  146 (396)
T 3c5m_A           85 GGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEE------------------WKGYGTWVANSDCTKLVGIEILK  146 (396)
T ss_dssp             TCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTT------------------EEEEEEEEECTTSSEEEEEEEEG
T ss_pred             cceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccc------------------cCCCCCEEEeccCCccccccccc
Confidence            378899999776666777899999988776655431110                  00111  1               


Q ss_pred             -EEeCCCCeEEEE-----eCCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeC-CCCeEEEEeCCcccccccceeee
Q 019290          102 -KFNPVTCDLYIA-----DAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDP-NTGIVYFTDSSIYFQRRQYFMSI  174 (343)
Q Consensus       102 -~~~~~~~~l~v~-----~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~-~dg~l~v~~~~~~~~~~~~~~~~  174 (343)
                       .+.++++.+.++     .....|+.+|.++++.+.+...     ...+..+++.+ .++.+++......          
T Consensus       147 ~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~-----~~~~~~~~~sp~dg~~l~~~~~~~~----------  211 (396)
T 3c5m_A          147 RDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQD-----TAWLGHPIYRPFDDSTVGFCHEGPH----------  211 (396)
T ss_dssp             GGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEE-----SSCEEEEEEETTEEEEEEEEECSCS----------
T ss_pred             cccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccC-----CcccccceECCCCCCEEEEEecCCC----------
Confidence             123322223222     1223589999988877665421     12356677877 3233555432200          


Q ss_pred             eecCCCceEEEEeCCCCceEEeecC--CCCcceeEEecCCCEEEEEEcC--C--CeEEEEEccCccccccceeeecCCCC
Q 019290          175 ATGDRSGRLLKYDPLKKNVTVMYNG--LSFPNGVALSNNNSFLLLAESA--T--LKILRFWLQGERTTYTPQLFAEMPRF  248 (343)
Q Consensus       175 ~~~~~~~~v~~~d~~~~~~~~~~~~--~~~~~~i~~~~d~~~lyv~~~~--~--~~i~~~~~~~~~~~~~~~~~~~~~~~  248 (343)
                        ......|+.+|.++++.+.+...  ......++++|||+.|+++...  .  +.|+++++.+    ++.+.+...++.
T Consensus       212 --~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~----g~~~~l~~~~~~  285 (396)
T 3c5m_A          212 --DLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPET----LENEEVMVMPPC  285 (396)
T ss_dssp             --SSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTT----CCEEEEEECCSE
T ss_pred             --CCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCC----CCeEEeeeCCCC
Confidence              00014699999877766555432  1234567899999877665332  2  3499999865    222333222221


Q ss_pred             CCceeeCC-CCCEEEEe
Q 019290          249 PDNIKSDS-KGEFWIAM  264 (343)
Q Consensus       249 p~~i~~d~-~G~lwi~~  264 (343)
                       . ....+ +|++++..
T Consensus       286 -~-~~~s~~dg~~l~~~  300 (396)
T 3c5m_A          286 -S-HLMSNFDGSLMVGD  300 (396)
T ss_dssp             -E-EEEECSSSSEEEEE
T ss_pred             -C-CCccCCCCceEEEe
Confidence             1 66777 89866654

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=98.40  E-value=0.00015  Score=65.65  Aligned_cols=192  Identities=12%  Similarity=0.079  Sum_probs=113.3

Q ss_pred             CceEEEcCC-CCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           37 PESLAFDCN-GEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        37 p~~l~~d~~-g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      ..++.+.++ +..++++..++.|..||..+++........ .             .......+..+.+.+.++.++++..
T Consensus       160 v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~-~-------------~~~h~~~v~~~~~~~~~~~~l~sgs  225 (380)
T 3iz6_a          160 ASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSE-F-------------PSGHTADVLSLSINSLNANMFISGS  225 (380)
T ss_dssp             CCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCC-S-------------SSSCCSCEEEEEECSSSCCEEEEEE
T ss_pred             eEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecc-c-------------CCCCccCeEEEEeecCCCCEEEEEE
Confidence            445666665 445778889999999999876544322100 0             0011223567777664555555434


Q ss_pred             CCe-EEEEeCCCC-e-EEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCc
Q 019290          116 YFG-LMVVGPNGG-Q-AQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKN  192 (343)
Q Consensus       116 ~~g-i~~~d~~~~-~-~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~  192 (343)
                      .++ |..+|.+.. + +..+ ...    ...++.+++.| ++..+++...                 .+.|..||..+++
T Consensus       226 ~D~~v~~wd~~~~~~~~~~~-~~h----~~~v~~v~~~p-~~~~l~s~s~-----------------D~~i~lwd~~~~~  282 (380)
T 3iz6_a          226 CDTTVRLWDLRITSRAVRTY-HGH----EGDINSVKFFP-DGQRFGTGSD-----------------DGTCRLFDMRTGH  282 (380)
T ss_dssp             TTSCEEEEETTTTCCCCEEE-CCC----SSCCCEEEECT-TSSEEEEECS-----------------SSCEEEEETTTTE
T ss_pred             CCCeEEEEECCCCCcceEEE-CCc----CCCeEEEEEec-CCCeEEEEcC-----------------CCeEEEEECCCCc
Confidence            444 888998632 2 2222 111    23578999999 5887776544                 5668888887766


Q ss_pred             eEEeecC--------CCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeec-CCCCCCceeeCCCCCEEEE
Q 019290          193 VTVMYNG--------LSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAE-MPRFPDNIKSDSKGEFWIA  263 (343)
Q Consensus       193 ~~~~~~~--------~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~G~lwi~  263 (343)
                      .......        ......++++++++.++. ...++.|..|+............... ..+....++++++|++.++
T Consensus       283 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s  361 (380)
T 3iz6_a          283 QLQVYNREPDRNDNELPIVTSVAFSISGRLLFA-GYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCT  361 (380)
T ss_dssp             EEEEECCCCSSSCCSSCSCSEEEECSSSSEEEE-ECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEE
T ss_pred             EEEEecccccccccccCceEEEEECCCCCEEEE-EECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEE
Confidence            4432211        122578999999986654 45688999999764221011111101 1223556788999987776


Q ss_pred             ecc
Q 019290          264 MNS  266 (343)
Q Consensus       264 ~~~  266 (343)
                      ...
T Consensus       362 gs~  364 (380)
T 3iz6_a          362 GSW  364 (380)
T ss_dssp             ECT
T ss_pred             eeC
Confidence            654

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=98.39  E-value=0.00046  Score=63.85  Aligned_cols=226  Identities=12%  Similarity=0.051  Sum_probs=125.0

Q ss_pred             EcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCCCeEEE
Q 019290           42 FDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFGLMV  121 (343)
Q Consensus        42 ~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~~gi~~  121 (343)
                      +..+++.++++..++.|..||..+++.....                   ......+..+++.+ ++.+..+.....|..
T Consensus       128 ~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~~-------------------~~h~~~V~~l~~~~-~~~l~s~s~dg~i~v  187 (464)
T 3v7d_B          128 LQFEDNYVITGADDKMIRVYDSINKKFLLQL-------------------SGHDGGVWALKYAH-GGILVSGSTDRTVRV  187 (464)
T ss_dssp             EEEETTEEEEEETTSCEEEEETTTTEEEEEE-------------------CCCSSCEEEEEECS-TTEEEEEETTSCEEE
T ss_pred             EEECCCEEEEEcCCCcEEEEECCCCcEEEEE-------------------eCCCcCEEEEEEcC-CCEEEEEeCCCCEEE
Confidence            3445677888899999999998776533221                   12233567888887 666666654445999


Q ss_pred             EeCCCCeEEEcccccCCCCccCcceeEEe--CCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEe---
Q 019290          122 VGPNGGQAQQLASSAGGIPFRFTNDLDID--PNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVM---  196 (343)
Q Consensus       122 ~d~~~~~~~~~~~~~~~~~~~~~~~i~~d--~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~---  196 (343)
                      +|.++++........    ...+..+++.  + ++.+.++...                 .+.|..+|..++.....   
T Consensus       188 wd~~~~~~~~~~~~h----~~~v~~l~~~~~~-~~~~l~s~s~-----------------d~~i~vwd~~~~~~~~~~~~  245 (464)
T 3v7d_B          188 WDIKKGCCTHVFEGH----NSTVRCLDIVEYK-NIKYIVTGSR-----------------DNTLHVWKLPKESSVPDHGE  245 (464)
T ss_dssp             EETTTTEEEEEECCC----SSCEEEEEEEESS-SCEEEEEEET-----------------TSCEEEEECCCCCCC-----
T ss_pred             EECCCCcEEEEECCC----CCccEEEEEecCC-CCCEEEEEcC-----------------CCcEEEeeCCCCcccccccc
Confidence            999988654432221    1345666666  4 3565554332                 34566666654431100   


Q ss_pred             -------------------ecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCC
Q 019290          197 -------------------YNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSK  257 (343)
Q Consensus       197 -------------------~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~  257 (343)
                                         ..........++++++..++.+ ..++.|..|++.....   ...+.........++++++
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~-~~d~~i~vwd~~~~~~---~~~~~~~~~~v~~~~~~~~  321 (464)
T 3v7d_B          246 EHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSG-SYDNTLIVWDVAQMKC---LYILSGHTDRIYSTIYDHE  321 (464)
T ss_dssp             -CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEE-ETTSCEEEEETTTTEE---EEEECCCSSCEEEEEEETT
T ss_pred             cCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEE-eCCCeEEEEECCCCcE---EEEecCCCCCEEEEEEcCC
Confidence                               0001112233456777766555 4678999999864211   1222111222345678889


Q ss_pred             CCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECC-CCCEEEEeeCCCCCccCCceeEEEeCCEEEEecCCCC
Q 019290          258 GEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDV-NGNVVDVLDGNEGNTLNSVSEVQEYGEYLYTGSSVQP  336 (343)
Q Consensus       258 G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~~~  336 (343)
                      |+..++...                        .+.|..+|. +++.+..+....    ..+..+..+++.|.. .....
T Consensus       322 ~~~l~sg~~------------------------dg~i~vwd~~~~~~~~~~~~h~----~~v~~~~~~~~~l~s-~s~dg  372 (464)
T 3v7d_B          322 RKRCISASM------------------------DTTIRIWDLENGELMYTLQGHT----ALVGLLRLSDKFLVS-AAADG  372 (464)
T ss_dssp             TTEEEEEET------------------------TSCEEEEETTTTEEEEEECCCS----SCEEEEEECSSEEEE-EETTS
T ss_pred             CCEEEEEeC------------------------CCcEEEEECCCCcEEEEEeCCC----CcEEEEEEcCCEEEE-EeCCC
Confidence            877766655                        346777776 466666554322    234444444443433 33444


Q ss_pred             eEEEEc
Q 019290          337 YVVVIK  342 (343)
Q Consensus       337 ~i~~~~  342 (343)
                      .|.+++
T Consensus       373 ~v~vwd  378 (464)
T 3v7d_B          373 SIRGWD  378 (464)
T ss_dssp             EEEEEE
T ss_pred             cEEEEE
Confidence            555554

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=98.38  E-value=8.9e-06  Score=73.23  Aligned_cols=195  Identities=9%  Similarity=0.017  Sum_probs=105.6

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCC-eEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEe
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSG-WTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIAD  114 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~  114 (343)
                      ...++++.++|+.+.++..++.|..||..+++ +.....                 .......+..+++++++..|..+.
T Consensus        57 ~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~-----------------~~~~~~~v~~~~~~~~~~~l~~~~  119 (377)
T 3dwl_C           57 IVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLV-----------------LLRLNRAATFVRWSPNEDKFAVGS  119 (377)
T ss_dssp             CEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEE-----------------CCCCSSCEEEEECCTTSSCCEEEE
T ss_pred             eEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeE-----------------ecccCCceEEEEECCCCCEEEEEe
Confidence            46789999999988888889999999987654 111110                 012223467888988445566665


Q ss_pred             CCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCC---
Q 019290          115 AYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKK---  191 (343)
Q Consensus       115 ~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~---  191 (343)
                      ....|..+|.++++...............+..+++.+ ++.+.++...                 .+.|..||...+   
T Consensus       120 ~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~-----------------d~~i~iwd~~~~~~~  181 (377)
T 3dwl_C          120 GARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHP-NNVLLAAGCA-----------------DRKAYVLSAYVRDVD  181 (377)
T ss_dssp             SSSCEEECCC-----CCCCEEECSSCCSCEEEEEECT-TSSEEEEEES-----------------SSCEEEEEECCSSCC
T ss_pred             cCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcC-CCCEEEEEeC-----------------CCEEEEEEEEecccC
Confidence            4344888898876521011111111124578899999 5776654432                 345666664321   


Q ss_pred             ---------------ceEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCcccccc-ceeeecCCCCCCceeeC
Q 019290          192 ---------------NVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYT-PQLFAEMPRFPDNIKSD  255 (343)
Q Consensus       192 ---------------~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~p~~i~~d  255 (343)
                                     +.............++++++++.++.+ ..++.|..|++........ ...+.........+++.
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s  260 (377)
T 3dwl_C          182 AKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYA-GHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWA  260 (377)
T ss_dssp             -CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEE-ETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEE
T ss_pred             CCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEE-eCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEc
Confidence                           111111233446789999999866555 4678999999875321000 11221112223457788


Q ss_pred             CCCCEEEEecc
Q 019290          256 SKGEFWIAMNS  266 (343)
Q Consensus       256 ~~G~lwi~~~~  266 (343)
                      ++|++.++...
T Consensus       261 ~~~~~l~~~~~  271 (377)
T 3dwl_C          261 NESAIVAAGYN  271 (377)
T ss_dssp             ETTEEEEEESS
T ss_pred             CCCCEEEEEcC
Confidence            88887776654

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=98.38  E-value=0.00042  Score=61.37  Aligned_cols=160  Identities=8%  Similarity=0.032  Sum_probs=100.4

Q ss_pred             CCceEEEcCC----CCeeEEEecCCEEEEEEcCCCC-eEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCC---
Q 019290           36 GPESLAFDCN----GEGPYVGVSDGRILKWKAANSG-WTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVT---  107 (343)
Q Consensus        36 ~p~~l~~d~~----g~~l~~~~~~g~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~---  107 (343)
                      ...++++.|+    ...++++..++.|..||..+++ ...+....               ..........+++.++.   
T Consensus        20 ~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~---------------~~~~~~~v~~~~~~~~~~~~   84 (366)
T 3k26_A           20 PLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYV---------------DADADENFYTCAWTYDSNTS   84 (366)
T ss_dssp             CEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEE---------------CSCTTCCEEEEEEEECTTTC
T ss_pred             ceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeecc---------------ccCCCCcEEEEEeccCCCCC
Confidence            5678999973    3446677777899999987543 23332110               00122346788888731   


Q ss_pred             Ce-EEEEeCCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEE
Q 019290          108 CD-LYIADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKY  186 (343)
Q Consensus       108 ~~-l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~  186 (343)
                      +. |+.+.....|..+|.++++........    ...+..+++.+.++.+.++...                 .+.|..|
T Consensus        85 ~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~----~~~i~~~~~~~~~~~~l~s~~~-----------------dg~i~iw  143 (366)
T 3k26_A           85 HPLLAVAGSRGIIRIINPITMQCIKHYVGH----GNAINELKFHPRDPNLLLSVSK-----------------DHALRLW  143 (366)
T ss_dssp             CEEEEEEETTCEEEEECTTTCCEEEEEESC----CSCEEEEEECSSCTTEEEEEET-----------------TSCEEEE
T ss_pred             CCEEEEecCCCEEEEEEchhceEeeeecCC----CCcEEEEEECCCCCCEEEEEeC-----------------CCeEEEE
Confidence            33 555543334899999877654332211    2457889998832565554322                 4678889


Q ss_pred             eCCCCceEEee----cCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290          187 DPLKKNVTVMY----NGLSFPNGVALSNNNSFLLLAESATLKILRFWLQG  232 (343)
Q Consensus       187 d~~~~~~~~~~----~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~  232 (343)
                      |..+++.....    ........++++++++.++.+ ..++.|..|++..
T Consensus       144 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~  192 (366)
T 3k26_A          144 NIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSC-GMDHSLKLWRINS  192 (366)
T ss_dssp             ETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEE-ETTSCEEEEESCS
T ss_pred             EeecCeEEEEecccccccCceeEEEECCCCCEEEEe-cCCCCEEEEECCC
Confidence            98777655433    234557889999999876655 4578999999875

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=98.38  E-value=4.6e-05  Score=68.12  Aligned_cols=194  Identities=14%  Similarity=0.120  Sum_probs=110.5

Q ss_pred             CCceEEEcCC--CCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCC--CCeEE
Q 019290           36 GPESLAFDCN--GEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPV--TCDLY  111 (343)
Q Consensus        36 ~p~~l~~d~~--g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~--~~~l~  111 (343)
                      ...++++.++  ++.++++..++.|..||..++++......                 ......+..++++++  +..++
T Consensus        57 ~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-----------------~~~~~~v~~~~~~~~~~~~~l~  119 (379)
T 3jrp_A           57 PVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVH-----------------AVHSASVNSVQWAPHEYGPLLL  119 (379)
T ss_dssp             CEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEE-----------------CCCSSCEEEEEECCGGGCSEEE
T ss_pred             cEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeee-----------------cCCCcceEEEEeCCCCCCCEEE
Confidence            4568888876  88888888999999999887653333211                 112234678999984  34566


Q ss_pred             EEeCCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCC------------CCeEEEEeCCcccccccceeeeeecCC
Q 019290          112 IADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPN------------TGIVYFTDSSIYFQRRQYFMSIATGDR  179 (343)
Q Consensus       112 v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~------------dg~l~v~~~~~~~~~~~~~~~~~~~~~  179 (343)
                      ++.....|..+|.+++......... . ....+..+++.+.            ++.++++...                 
T Consensus       120 ~~~~d~~i~v~d~~~~~~~~~~~~~-~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------  180 (379)
T 3jrp_A          120 VASSDGKVSVVEFKENGTTSPIIID-A-HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA-----------------  180 (379)
T ss_dssp             EEETTSEEEEEECCTTSCCCEEEEE-C-CTTCEEEEEECCCC----------CTTCEEEEEET-----------------
T ss_pred             EecCCCcEEEEecCCCCceeeEEec-C-CCCceEEEEEcCccccccccccCCCCCCEEEEEeC-----------------
Confidence            6654445889998766321110110 0 1134677888772            2554443322                 


Q ss_pred             CceEEEEeCCCCce-----EEeecCCCCcceeEEecC---CCEEEEEEcCCCeEEEEEccCccccccceeeec--CCCCC
Q 019290          180 SGRLLKYDPLKKNV-----TVMYNGLSFPNGVALSNN---NSFLLLAESATLKILRFWLQGERTTYTPQLFAE--MPRFP  249 (343)
Q Consensus       180 ~~~v~~~d~~~~~~-----~~~~~~~~~~~~i~~~~d---~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~p  249 (343)
                      .+.|..||..++..     ..+.........++++|+   +. ++++...++.|..|++...........+..  .....
T Consensus       181 dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v  259 (379)
T 3jrp_A          181 DNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS-YLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVL  259 (379)
T ss_dssp             TSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSE-EEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCE
T ss_pred             CCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCC-eEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcE
Confidence            44577776543331     122223345678999999   55 455556688999999875321001111111  11223


Q ss_pred             CceeeCCCCCEEEEecc
Q 019290          250 DNIKSDSKGEFWIAMNS  266 (343)
Q Consensus       250 ~~i~~d~~G~lwi~~~~  266 (343)
                      ..++++++|+++++...
T Consensus       260 ~~~~~s~~g~~l~~~~~  276 (379)
T 3jrp_A          260 WRASWSLSGNVLALSGG  276 (379)
T ss_dssp             EEEEECSSSCCEEEEES
T ss_pred             EEEEEcCCCCEEEEecC
Confidence            34677888876555433

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=98.38  E-value=0.0004  Score=63.68  Aligned_cols=176  Identities=10%  Similarity=0.064  Sum_probs=98.0

Q ss_pred             CCceEEEcCCC--CeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCC-CC----C---------------cc-cC
Q 019290           36 GPESLAFDCNG--EGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDG-ST----N---------------TT-LE   92 (343)
Q Consensus        36 ~p~~l~~d~~g--~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~----~---------------~~-~~   92 (343)
                      ...++++.+++  ..+.++..++.|..|+..++....-.............. ..    .               .. ..
T Consensus        95 ~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (447)
T 3dw8_B           95 KINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFAN  174 (447)
T ss_dssp             CCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECS
T ss_pred             ceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEecc
Confidence            47789999998  667788889999998875532211000000000000000 00    0               00 01


Q ss_pred             CCcCCeeeEEEeCCCCeEEEEeCCCeEEEEeCCC-CeEEEcccc---cCCCCccCcceeEEeCCCC-eEEEEeCCccccc
Q 019290           93 PLCGRPLGIKFNPVTCDLYIADAYFGLMVVGPNG-GQAQQLASS---AGGIPFRFTNDLDIDPNTG-IVYFTDSSIYFQR  167 (343)
Q Consensus        93 ~~~~~p~gi~~~~~~~~l~v~~~~~gi~~~d~~~-~~~~~~~~~---~~~~~~~~~~~i~~d~~dg-~l~v~~~~~~~~~  167 (343)
                      .....+..+++++ ++.++++.....|..+|.++ ++.......   ........+..+++++ ++ .++++...     
T Consensus       175 ~h~~~v~~~~~~~-~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~s~~~-----  247 (447)
T 3dw8_B          175 AHTYHINSISINS-DYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHP-NSCNTFVYSSS-----  247 (447)
T ss_dssp             CCSSCCCEEEECT-TSSEEEEECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECS-SCTTEEEEEET-----
T ss_pred             CCCcceEEEEEcC-CCCEEEEeCCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECC-CCCcEEEEEeC-----
Confidence            2233467899998 56555554434488999883 222221100   0011124578899999 46 66554432     


Q ss_pred             ccceeeeeecCCCceEEEEeCCCCce-----EEeecCCC------------CcceeEEecCCCEEEEEEcCCCeEEEEEc
Q 019290          168 RQYFMSIATGDRSGRLLKYDPLKKNV-----TVMYNGLS------------FPNGVALSNNNSFLLLAESATLKILRFWL  230 (343)
Q Consensus       168 ~~~~~~~~~~~~~~~v~~~d~~~~~~-----~~~~~~~~------------~~~~i~~~~d~~~lyv~~~~~~~i~~~~~  230 (343)
                                  .+.|..||..+++.     ..+.....            ....++++++++.+.... . +.|..|++
T Consensus       248 ------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~-~~v~iwd~  313 (447)
T 3dw8_B          248 ------------KGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRD-Y-LSVKVWDL  313 (447)
T ss_dssp             ------------TSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEE-S-SEEEEEET
T ss_pred             ------------CCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEee-C-CeEEEEeC
Confidence                        45688888776653     33332222            567899999998766554 4 89999998


Q ss_pred             cC
Q 019290          231 QG  232 (343)
Q Consensus       231 ~~  232 (343)
                      ..
T Consensus       314 ~~  315 (447)
T 3dw8_B          314 NM  315 (447)
T ss_dssp             TC
T ss_pred             CC
Confidence            64

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.38  E-value=2.7e-05  Score=70.31  Aligned_cols=202  Identities=10%  Similarity=0.002  Sum_probs=103.5

Q ss_pred             CceEEEcCCCCeeEEE-ec--CCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCe-eeEEEeCCCCeEEE
Q 019290           37 PESLAFDCNGEGPYVG-VS--DGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRP-LGIKFNPVTCDLYI  112 (343)
Q Consensus        37 p~~l~~d~~g~~l~~~-~~--~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~gi~~~~~~~~l~v  112 (343)
                      +.+++++++|+.+.+. ..  ...|+.+|..+++...+..                    ..... ..+.++++++.|++
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~--------------------~~~~~~~~~~~spdg~~l~~   97 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTE--------------------GKGDNTFGGFISTDERAFFY   97 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCC--------------------SSCBCTTTCEECTTSSEEEE
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeec--------------------CCCCccccceECCCCCEEEE
Confidence            6778899999965543 32  2479999988876554421                    01111 22567775556766


Q ss_pred             EeCCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCC--eEEEEeCCcccccccceeeee---ecCCCceEEEEe
Q 019290          113 ADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTG--IVYFTDSSIYFQRRQYFMSIA---TGDRSGRLLKYD  187 (343)
Q Consensus       113 ~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg--~l~v~~~~~~~~~~~~~~~~~---~~~~~~~v~~~d  187 (343)
                      +.....|+.+|.++++.+.+........ ..-..+++...+.  .+|...  ..+..........   .......|+.+|
T Consensus        98 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~-~~g~~l~~~~~~~~~~~~~~~--~~~spdg~~~~~~~~~~~~~~~~l~~~d  174 (396)
T 3c5m_A           98 VKNELNLMKVDLETLEEQVIYTVDEEWK-GYGTWVANSDCTKLVGIEILK--RDWQPLTSWEKFAEFYHTNPTCRLIKVD  174 (396)
T ss_dssp             EETTTEEEEEETTTCCEEEEEECCTTEE-EEEEEEECTTSSEEEEEEEEG--GGCCCCCSHHHHHHHHHTCCCEEEEEEE
T ss_pred             EEcCCcEEEEECCCCCcEEEEecccccC-CCCCEEEeccCCccccccccc--cccCCCCcceeeeeeccCCCcceEEEEE
Confidence            6555569999999887665543211100 0000011111000  000000  0000000000000   002245799999


Q ss_pred             CCCCceEEeecCCCCcceeEEec-CCCEEEEEEcCC-----CeEEEEEccCccccccceeeecC--CCCCCceeeCCCCC
Q 019290          188 PLKKNVTVMYNGLSFPNGVALSN-NNSFLLLAESAT-----LKILRFWLQGERTTYTPQLFAEM--PRFPDNIKSDSKGE  259 (343)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~i~~~~-d~~~lyv~~~~~-----~~i~~~~~~~~~~~~~~~~~~~~--~~~p~~i~~d~~G~  259 (343)
                      ..+++...+.........+++++ +++.++++....     ..|+.+++++    ...+.+...  ...+..+.++++|+
T Consensus       175 ~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~----~~~~~l~~~~~~~~~~~~~~spdg~  250 (396)
T 3c5m_A          175 IETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDG----SNVRKIKEHAEGESCTHEFWIPDGS  250 (396)
T ss_dssp             TTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTS----CCCEESSCCCTTEEEEEEEECTTSS
T ss_pred             CCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCC----CceeEeeccCCCccccceEECCCCC
Confidence            98888766654444566788998 777665554322     4799999865    222222221  11123357889986


Q ss_pred             -EEEEec
Q 019290          260 -FWIAMN  265 (343)
Q Consensus       260 -lwi~~~  265 (343)
                       |+++..
T Consensus       251 ~l~~~~~  257 (396)
T 3c5m_A          251 AMAYVSY  257 (396)
T ss_dssp             CEEEEEE
T ss_pred             EEEEEec
Confidence             555544

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=98.37  E-value=0.00011  Score=67.14  Aligned_cols=221  Identities=9%  Similarity=-0.029  Sum_probs=122.7

Q ss_pred             EcCCCCeeEEEecCCEEEEEEcCC--CCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeC-CCCeEEEEeCCC-
Q 019290           42 FDCNGEGPYVGVSDGRILKWKAAN--SGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNP-VTCDLYIADAYF-  117 (343)
Q Consensus        42 ~d~~g~~l~~~~~~g~i~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~-~~~~l~v~~~~~-  117 (343)
                      .|+++. +|+++..| +++++...  ..|..+...                  ........|++++ +.+.||++.... 
T Consensus        19 ~d~~g~-l~vgt~~G-l~~~~~~~~g~~W~~~~~~------------------~~~~~v~~i~~dp~~~~~l~~g~~~g~   78 (394)
T 3b7f_A           19 ESGPVM-LLVATIKG-AWFLASDPARRTWELRGPV------------------FLGHTIHHIVQDPREPERMLMAARTGH   78 (394)
T ss_dssp             CCSCCE-EEEEETTE-EEEEEECTTSCSEEEEEEE------------------STTSEEEEEEECSSSTTCEEEEEEC--
T ss_pred             CCCCCE-EEEEecCc-eEEEECCCCCCCceECCcc------------------CCCCceEEEEECCCCCCeEEEEecCCC
Confidence            455566 89988765 88887654  567665210                  1112457888886 357899986443 


Q ss_pred             ---eEEEEeCCCCeEEEccccc--CCC-------CccCcceeEEeCC--CCeEEEEeCCcccccccceeeeeecCCCceE
Q 019290          118 ---GLMVVGPNGGQAQQLASSA--GGI-------PFRFTNDLDIDPN--TGIVYFTDSSIYFQRRQYFMSIATGDRSGRL  183 (343)
Q Consensus       118 ---gi~~~d~~~~~~~~~~~~~--~~~-------~~~~~~~i~~d~~--dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v  183 (343)
                         +|++.+-.+..++.+....  ...       ....+..+++++.  .+.+|++..                  .++|
T Consensus        79 ~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~------------------~ggl  140 (394)
T 3b7f_A           79 LGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTS------------------PQGL  140 (394)
T ss_dssp             CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEE------------------TTEE
T ss_pred             CCccEEEeCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEEEec------------------CCcE
Confidence               6888765555566653211  110       1123556888852  378999553                  3568


Q ss_pred             EEEeCCCCceEEeecC-------------------CCCcceeEEec-CCCEEEEEEcCCCeEEEEEccCccccccceeee
Q 019290          184 LKYDPLKKNVTVMYNG-------------------LSFPNGVALSN-NNSFLLLAESATLKILRFWLQGERTTYTPQLFA  243 (343)
Q Consensus       184 ~~~d~~~~~~~~~~~~-------------------~~~~~~i~~~~-d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~  243 (343)
                      ++.+..+...+.+...                   ......+++++ +.+.+|+... .+.|++.+-.+    ...+.+.
T Consensus       141 ~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~-~ggl~~s~DgG----~tW~~~~  215 (394)
T 3b7f_A          141 FRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMS-SGGVFESTDAG----TDWKPLN  215 (394)
T ss_dssp             EEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEE-TBEEEEESSTT----SSCEECC
T ss_pred             EEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEEC-CCCEEEECCCC----CCceECC
Confidence            8887554555543210                   01124677776 3456887753 45688765434    2222221


Q ss_pred             c-CC--CC----------CCceeeCCC--CCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECCCCCEEEEee
Q 019290          244 E-MP--RF----------PDNIKSDSK--GEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLD  308 (343)
Q Consensus       244 ~-~~--~~----------p~~i~~d~~--G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~  308 (343)
                      . ..  .+          ...++++++  +.+|+++..                          +|++.+..|+....+.
T Consensus       216 ~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~--------------------------gl~~s~D~G~tW~~~~  269 (394)
T 3b7f_A          216 RGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHC--------------------------GIYRMDRREGVWKRIG  269 (394)
T ss_dssp             TTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETT--------------------------EEEEEETTTTEEECGG
T ss_pred             CCccccccCCCccccCcceeEEEECCCCCCEEEEEcCC--------------------------eEEEeCCCCCcceECC
Confidence            1 00  01          234677875  789998765                          7888876777665543


Q ss_pred             C--CCCCccCCceeEEE---eCCEEEEec
Q 019290          309 G--NEGNTLNSVSEVQE---YGEYLYTGS  332 (343)
Q Consensus       309 ~--~~~~~~~~~~~~~~---~~g~l~i~~  332 (343)
                      .  +.. .......+..   +.+.||+++
T Consensus       270 ~~l~~~-~~~~~~~i~~~p~~~~~l~~~t  297 (394)
T 3b7f_A          270 DAMPRE-VGDIGFPIVVHQRDPRTVWVFP  297 (394)
T ss_dssp             GGSCTT-TCSCEEEEEECSSCTTCEEEEE
T ss_pred             CCCCCC-CccceEEEEECCCCCCEEEEEe
Confidence            2  211 0011222333   357889875

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=98.36  E-value=0.00029  Score=69.78  Aligned_cols=250  Identities=9%  Similarity=0.020  Sum_probs=131.2

Q ss_pred             ceEEEcCCCCeeEEEecC---------CEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCC
Q 019290           38 ESLAFDCNGEGPYVGVSD---------GRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTC  108 (343)
Q Consensus        38 ~~l~~d~~g~~l~~~~~~---------g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~  108 (343)
                      .++.++|||+.+.+...+         +.++.+|..+++...+.                    .........+++|++.
T Consensus        65 ~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~--------------------~~~~~~~~~~~SPdG~  124 (740)
T 4a5s_A           65 NDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEE--------------------RIPNNTQWVTWSPVGH  124 (740)
T ss_dssp             CEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSS--------------------CCCTTEEEEEECSSTT
T ss_pred             cceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEcc--------------------cCCCcceeeEECCCCC
Confidence            448899999976665543         56788998887544321                    1122356778898555


Q ss_pred             eEEEEeCCCeEEEEeCCCCeEEEcccccCCC-C-------------ccCcceeEEeCCCCe-EEEEe--CCc--cccc--
Q 019290          109 DLYIADAYFGLMVVGPNGGQAQQLASSAGGI-P-------------FRFTNDLDIDPNTGI-VYFTD--SSI--YFQR--  167 (343)
Q Consensus       109 ~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~-~-------------~~~~~~i~~d~~dg~-l~v~~--~~~--~~~~--  167 (343)
                      .|.++ ....|+.++.++++.+.+....... .             +.....+++.| ||+ |.++.  ...  .+.+  
T Consensus       125 ~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSp-Dg~~la~~~~d~~~v~~~~~~~  202 (740)
T 4a5s_A          125 KLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSP-NGTFLAYAQFNDTEVPLIEYSF  202 (740)
T ss_dssp             CEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECT-TSSEEEEEEEECTTCCEEEEEE
T ss_pred             EEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECC-CCCEEEEEEEcccCCceEEEEe
Confidence            67666 3567999999888766653221110 0             11223578888 576 44431  110  0000  


Q ss_pred             -----------ccceeeee-ecCCCceEEEEeCCC---C---ceEEeec------CCCCcceeEEecCCCEEEEE-EcC-
Q 019290          168 -----------RQYFMSIA-TGDRSGRLLKYDPLK---K---NVTVMYN------GLSFPNGVALSNNNSFLLLA-ESA-  221 (343)
Q Consensus       168 -----------~~~~~~~~-~~~~~~~v~~~d~~~---~---~~~~~~~------~~~~~~~i~~~~d~~~lyv~-~~~-  221 (343)
                                 ....+... ...+...|+.+|.++   +   +...+..      .......++++|||+.++.. ... 
T Consensus       203 ~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~  282 (740)
T 4a5s_A          203 YSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQ  282 (740)
T ss_dssp             CCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESST
T ss_pred             ecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCC
Confidence                       00000000 001123688899887   6   4444432      12224567899999854433 322 


Q ss_pred             -CCeEEEEEccCcc----ccccceeeec-CCCC-----CCceeeCCCCCEE--EEeccCCCccccccccccccccCCCcc
Q 019290          222 -TLKILRFWLQGER----TTYTPQLFAE-MPRF-----PDNIKSDSKGEFW--IAMNSARGKIESNKKTAFCEETAKPWF  288 (343)
Q Consensus       222 -~~~i~~~~~~~~~----~~~~~~~~~~-~~~~-----p~~i~~d~~G~lw--i~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (343)
                       ...|+.+++.+..    .....+.+.+ ..+.     +...++.+||+.+  ......+                    
T Consensus       283 ~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G--------------------  342 (740)
T 4a5s_A          283 NYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEG--------------------  342 (740)
T ss_dssp             TEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTS--------------------
T ss_pred             CEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCC--------------------
Confidence             2368888887532    0001111111 1111     3356788999732  2332212                    


Q ss_pred             cCCCeEEEECCCCCEEEEeeCCCCCccCCceeEEEeCCEEEEecCC
Q 019290          289 LRDPVGVKFDVNGNVVDVLDGNEGNTLNSVSEVQEYGEYLYTGSSV  334 (343)
Q Consensus       289 ~~~~~v~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~  334 (343)
                        ...|+.+|.+++....+....   .........+++.||+.+..
T Consensus       343 --~~~l~~~~~~~~~~~~lT~g~---~~v~~~~~~d~~~i~f~~~~  383 (740)
T 4a5s_A          343 --YRHICYFQIDKKDCTFITKGT---WEVIGIEALTSDYLYYISNE  383 (740)
T ss_dssp             --CEEEEEEETTCSSCEESCCSS---SCEEEEEEECSSEEEEEESC
T ss_pred             --ceEEEEEECCCCceEecccCC---EEEEEEEEEeCCEEEEEEec
Confidence              237888888776655544221   11122222457788877665

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=98.34  E-value=0.00062  Score=59.74  Aligned_cols=191  Identities=8%  Similarity=-0.002  Sum_probs=106.9

Q ss_pred             CCceEEEcCC-CCeeEEEecCCEEEEEEcCCCCeE-EeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEE
Q 019290           36 GPESLAFDCN-GEGPYVGVSDGRILKWKAANSGWT-EFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIA  113 (343)
Q Consensus        36 ~p~~l~~d~~-g~~l~~~~~~g~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~  113 (343)
                      ...+|++.|+ ++++.++..++.|..||..+.+.. ....               .........+..+++++++..|..+
T Consensus        40 ~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~---------------~~l~~h~~~V~~~~~s~dg~~l~s~  104 (340)
T 4aow_A           40 WVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQ---------------RALRGHSHFVSDVVISSDGQFALSG  104 (340)
T ss_dssp             CEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEE---------------EEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             CEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceee---------------EEEeCCCCCEEEEEECCCCCEEEEE
Confidence            4679999997 677778889999999987654311 0000               0001122346789999844445555


Q ss_pred             eCCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCce
Q 019290          114 DAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNV  193 (343)
Q Consensus       114 ~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~  193 (343)
                      .....+..++..............    .........+. +...++...                 .+.+..+|......
T Consensus       105 ~~d~~i~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~~~l~s~s~-----------------d~~~~~~d~~~~~~  162 (340)
T 4aow_A          105 SWDGTLRLWDLTTGTTTRRFVGHT----KDVLSVAFSSD-NRQIVSGSR-----------------DKTIKLWNTLGVCK  162 (340)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECCS----SCEEEEEECTT-SSCEEEEET-----------------TSCEEEECTTSCEE
T ss_pred             cccccceEEeecccceeeeecCCC----CceeEEEEeec-CccceeecC-----------------CCeEEEEEeCCCce
Confidence            433447888887665443322211    23445566663 555443322                 34577777654433


Q ss_pred             EEee--cCCCCcceeEEecCCC-EEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEecc
Q 019290          194 TVMY--NGLSFPNGVALSNNNS-FLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNS  266 (343)
Q Consensus       194 ~~~~--~~~~~~~~i~~~~d~~-~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~~  266 (343)
                      ....  ........+++.+++. .++++...++.|..|++.....   ...+....+....++++++|++.++...
T Consensus       163 ~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~---~~~~~~h~~~v~~~~~s~~~~~l~s~s~  235 (340)
T 4aow_A          163 YTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKL---KTNHIGHTGYLNTVTVSPDGSLCASGGK  235 (340)
T ss_dssp             EEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEE---EEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             EEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCce---eeEecCCCCcEEEEEECCCCCEEEEEeC
Confidence            2221  1123345667776543 3555666778899999765221   1122111222345778999987776554

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=98.33  E-value=3.8e-05  Score=69.37  Aligned_cols=159  Identities=14%  Similarity=0.047  Sum_probs=97.9

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEE-Ee
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYI-AD  114 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v-~~  114 (343)
                      ...++++.|+|+.+.++. ++.+.+++..++........                 .........+++.+ ++..++ +.
T Consensus       178 ~V~~v~fspdg~~l~s~s-~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~v~~v~fsp-dg~~l~~~s  238 (365)
T 4h5i_A          178 EVKDLHFSTDGKVVAYIT-GSSLEVISTVTGSCIARKTD-----------------FDKNWSLSKINFIA-DDTVLIAAS  238 (365)
T ss_dssp             CCCEEEECTTSSEEEEEC-SSCEEEEETTTCCEEEEECC-----------------CCTTEEEEEEEEEE-TTEEEEEEE
T ss_pred             ceEEEEEccCCceEEecc-ceeEEEEEeccCcceeeeec-----------------CCCCCCEEEEEEcC-CCCEEEEEe
Confidence            478999999999555554 56688888766543321100                 01122356788998 555444 42


Q ss_pred             CCC----eEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCC
Q 019290          115 AYF----GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLK  190 (343)
Q Consensus       115 ~~~----gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~  190 (343)
                      ...    -+..++....................+..+++.| ||++.++...                 .+.|..||..+
T Consensus       239 ~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Sp-dg~~lasgs~-----------------D~~V~iwd~~~  300 (365)
T 4h5i_A          239 LKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDM-KGELAVLASN-----------------DNSIALVKLKD  300 (365)
T ss_dssp             ESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECT-TSCEEEEEET-----------------TSCEEEEETTT
T ss_pred             cCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECC-CCCceEEEcC-----------------CCEEEEEECCC
Confidence            222    2556666555433221110011123578899999 5887765433                 45688899887


Q ss_pred             CceEE-eec-CCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290          191 KNVTV-MYN-GLSFPNGVALSNNNSFLLLAESATLKILRFWLQG  232 (343)
Q Consensus       191 ~~~~~-~~~-~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~  232 (343)
                      ++... +.. .......++|+||++.| ++.+.++.|.+|++..
T Consensus       301 ~~~~~~~~~gH~~~V~~v~fSpdg~~l-aS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          301 LSMSKIFKQAHSFAITEVTISPDSTYV-ASVSAANTIHIIKLPL  343 (365)
T ss_dssp             TEEEEEETTSSSSCEEEEEECTTSCEE-EEEETTSEEEEEECCT
T ss_pred             CcEEEEecCcccCCEEEEEECCCCCEE-EEEeCCCeEEEEEcCC
Confidence            77543 332 34557899999999854 5667789999999864

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=98.32  E-value=0.0012  Score=60.36  Aligned_cols=234  Identities=12%  Similarity=0.005  Sum_probs=128.4

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      ...+|++.++|+.+.++..++.|..||..+++......                   ........+..+  ...|..+..
T Consensus       149 ~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~-------------------~h~~~v~~~s~~--~~~l~sgs~  207 (420)
T 4gga_A          149 YISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMT-------------------SHSARVGSLSWN--SYILSSGSR  207 (420)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-------------------CCSSCEEEEEEE--TTEEEEEET
T ss_pred             cEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEe-------------------CCCCceEEEeeC--CCEEEEEeC
Confidence            36799999999988899999999999998765432211                   111233445554  345555544


Q ss_pred             CCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCce--
Q 019290          116 YFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNV--  193 (343)
Q Consensus       116 ~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~--  193 (343)
                      ...+..+|............  + ....+..+...+ ++...++...                 .+.+..++..+++.  
T Consensus       208 d~~i~~~d~~~~~~~~~~~~--~-h~~~~~~~~~~~-~g~~l~s~~~-----------------D~~v~i~~~~~~~~~~  266 (420)
T 4gga_A          208 SGHIHHHDVRVAEHHVATLS--G-HSQEVCGLRWAP-DGRHLASGGN-----------------DNLVNVWPSAPGEGGW  266 (420)
T ss_dssp             TSEEEEEETTSSSCEEEEEE--C-CSSCEEEEEECT-TSSEEEEEET-----------------TSCEEEEESSCCSSCS
T ss_pred             CCceeEeeecccceeeEEec--c-cccceeeeeecC-CCCeeeeeec-----------------cccceEEeeccccccc
Confidence            44477787765432211001  1 113456777888 4776654432                 34566677654432  


Q ss_pred             ---EEeecCCCCcceeEEecCCCEEEEE--EcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEeccCC
Q 019290          194 ---TVMYNGLSFPNGVALSNNNSFLLLA--ESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNSAR  268 (343)
Q Consensus       194 ---~~~~~~~~~~~~i~~~~d~~~lyv~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~~~~  268 (343)
                         ............+++.+++..++++  .+.++.|..|++.....   ...+ ........++..++++..++.....
T Consensus       267 ~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~---~~~~-~~~~~v~~~~~~~~~~~lv~~sg~~  342 (420)
T 4gga_A          267 VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC---LSAV-DAHSQVCSILWSPHYKELISGHGFA  342 (420)
T ss_dssp             CCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEE---EEEE-ECSSCEEEEEEETTTTEEEEEECTT
T ss_pred             eeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcccc---ceee-ccccceeeeeecCCCCeEEEEEecC
Confidence               1222233445778888877666554  34568999999865221   1111 1222234456677776555543211


Q ss_pred             CccccccccccccccCCCcccCCCeEEEECC-CCCEEEEeeCCCCCccCCceeEEEe-CCEEEEecCCCCeEEEE
Q 019290          269 GKIESNKKTAFCEETAKPWFLRDPVGVKFDV-NGNVVDVLDGNEGNTLNSVSEVQEY-GEYLYTGSSVQPYVVVI  341 (343)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~~~~i~~~  341 (343)
                                            .+.|..+|. +++.+..+....    ..+..+... +|++.++...-..|.+.
T Consensus       343 ----------------------d~~I~iwd~~~~~~v~~l~gH~----~~V~~l~~spdg~~l~S~s~D~tvriW  391 (420)
T 4gga_A          343 ----------------------QNQLVIWKYPTMAKVAELKGHT----SRVLSLTMSPDGATVASAAADETLRLW  391 (420)
T ss_dssp             ----------------------TCCEEEEETTTCCEEEEECCCS----SCEEEEEECTTSSCEEEEETTTEEEEE
T ss_pred             ----------------------CCEEEEEECCCCcEEEEEcCCC----CCEEEEEEcCCCCEEEEEecCCeEEEE
Confidence                                  235666674 566666664322    345554443 45555544444444443

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=98.26  E-value=0.00016  Score=64.54  Aligned_cols=149  Identities=11%  Similarity=0.048  Sum_probs=83.5

Q ss_pred             CeeeEEEeCCCCeEEEEeCCCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeee
Q 019290           97 RPLGIKFNPVTCDLYIADAYFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIA  175 (343)
Q Consensus        97 ~p~gi~~~~~~~~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~  175 (343)
                      ....+++++++..|..+ ..++ |..+|.++++.........+ ....+..+++.+ +|++.++...             
T Consensus        18 ~v~~l~~sp~g~~las~-~~D~~i~iw~~~~~~~~~~~~~~~~-h~~~v~~~~~sp-~g~~l~s~s~-------------   81 (345)
T 3fm0_A           18 RCWFLAWNPAGTLLASC-GGDRRIRIWGTEGDSWICKSVLSEG-HQRTVRKVAWSP-CGNYLASASF-------------   81 (345)
T ss_dssp             CEEEEEECTTSSCEEEE-ETTSCEEEEEEETTEEEEEEEECSS-CSSCEEEEEECT-TSSEEEEEET-------------
T ss_pred             cEEEEEECCCCCEEEEE-cCCCeEEEEEcCCCcceeeeeeccc-cCCcEEEEEECC-CCCEEEEEEC-------------
Confidence            45789999943344445 3444 88888877654322111111 124578899999 5876665432             


Q ss_pred             ecCCCceEEEEeCCCCceE---EeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCce
Q 019290          176 TGDRSGRLLKYDPLKKNVT---VMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNI  252 (343)
Q Consensus       176 ~~~~~~~v~~~d~~~~~~~---~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i  252 (343)
                          .+.+..++...+...   .+.........++++|+++.|. +...++.|..|++...........+.........+
T Consensus        82 ----D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~-s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~  156 (345)
T 3fm0_A           82 ----DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLA-TCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHV  156 (345)
T ss_dssp             ----TSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEE-EEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEE
T ss_pred             ----CCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEE-EEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEE
Confidence                344555555444332   2333345578899999998655 44567899999987532201111111111123346


Q ss_pred             eeCCCCCEEEEecc
Q 019290          253 KSDSKGEFWIAMNS  266 (343)
Q Consensus       253 ~~d~~G~lwi~~~~  266 (343)
                      +..++|++.++...
T Consensus       157 ~~~p~~~~l~s~s~  170 (345)
T 3fm0_A          157 VWHPSQELLASASY  170 (345)
T ss_dssp             EECSSSSCEEEEET
T ss_pred             EECCCCCEEEEEeC
Confidence            67888876655444

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=98.25  E-value=0.00032  Score=62.13  Aligned_cols=151  Identities=7%  Similarity=-0.027  Sum_probs=90.4

Q ss_pred             CCceEEEcCCCCeeEEEe-c----CCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeE
Q 019290           36 GPESLAFDCNGEGPYVGV-S----DGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDL  110 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~-~----~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l  110 (343)
                      ....++++|||+.+.+.. .    ...|+.++..+++...+...                    .. ...+.+++++..|
T Consensus        60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~--------------------~~-~~~~~wspdg~~l  118 (347)
T 2gop_A           60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEA--------------------KN-IRSLEWNEDSRKL  118 (347)
T ss_dssp             SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE--------------------SE-EEEEEECTTSSEE
T ss_pred             cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcC--------------------CC-ccceeECCCCCEE
Confidence            467789999998555433 2    23589999887765554321                    11 4567788745567


Q ss_pred             EEEeC---------------------------CCeEEEEeCCCCeE-EEcccccCCCCccCcceeEEeCCCCeEEEEeCC
Q 019290          111 YIADA---------------------------YFGLMVVGPNGGQA-QQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSS  162 (343)
Q Consensus       111 ~v~~~---------------------------~~gi~~~d~~~~~~-~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~  162 (343)
                      +++..                           ...|+.+|.++++. +.+.. .      .+..+++.+ || ++++...
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~------~~~~~~~sp-dg-~~~~~~~  189 (347)
T 2gop_A          119 LIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P------RFSSGIWHR-DK-IVVNVPH  189 (347)
T ss_dssp             EEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E------TTCEEEEET-TE-EEEEEEC
T ss_pred             EEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C------CcccccCCC-Ce-EEEEEec
Confidence            76632                           13489999998887 55432 1      356788999 58 5554321


Q ss_pred             cccccccceeeeeecCCCceEEEEeCCCCceEEeecCCCCcceeEEecCCCEEEEEEcC-------CCeEEEEE
Q 019290          163 IYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESA-------TLKILRFW  229 (343)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~-------~~~i~~~~  229 (343)
                      ....        ....+...|+.+|  +++.+.+... .  ....++|||+.+++....       ...|+.++
T Consensus       190 ~~~~--------~~~~~~~~l~~~d--~~~~~~l~~~-~--~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d  250 (347)
T 2gop_A          190 REII--------PQYFKFWDIYIWE--DGKEEKMFEK-V--SFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD  250 (347)
T ss_dssp             CCSS--------CCSSCCEEEEEEE--TTEEEEEEEE-E--SEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC
T ss_pred             cccc--------ccccccccEEEeC--CCceEEeccC-c--ceeeECCCCCEEEEEEccccCCccccceEEEEC
Confidence            0000        0000034689998  5666655443 2  122338999888776533       35788888

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=98.25  E-value=0.0022  Score=59.22  Aligned_cols=243  Identities=10%  Similarity=-0.020  Sum_probs=132.2

Q ss_pred             CCceEEEc--CCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCC-----CCcccCCCcCCeeeEEEeCCCC
Q 019290           36 GPESLAFD--CNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGS-----TNTTLEPLCGRPLGIKFNPVTC  108 (343)
Q Consensus        36 ~p~~l~~d--~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~p~gi~~~~~~~  108 (343)
                      ...++++.  +++..++++..++.|..||..+.............. .....+     ..............+  .++++
T Consensus       205 ~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~  281 (464)
T 3v7d_B          205 TVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYP-LVFHTPEENPYFVGVLRGHMASVRTV--SGHGN  281 (464)
T ss_dssp             CEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSS-EEESCGGGCTTEEEEECCCSSCEEEE--EEETT
T ss_pred             ccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcc-eEeeccCCCeEEEEEccCccceEEEE--cCCCC
Confidence            34566666  577778888899999999987643211100000000 000000     000000111122333  33245


Q ss_pred             eEEEEeCCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeC
Q 019290          109 DLYIADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDP  188 (343)
Q Consensus       109 ~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~  188 (343)
                      .+.++.....|..+|..+++........    ...+..+++++ ++...++...                 .+.|..||.
T Consensus       282 ~l~~~~~d~~i~vwd~~~~~~~~~~~~~----~~~v~~~~~~~-~~~~l~sg~~-----------------dg~i~vwd~  339 (464)
T 3v7d_B          282 IVVSGSYDNTLIVWDVAQMKCLYILSGH----TDRIYSTIYDH-ERKRCISASM-----------------DTTIRIWDL  339 (464)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECCC----SSCEEEEEEET-TTTEEEEEET-----------------TSCEEEEET
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEecCC----CCCEEEEEEcC-CCCEEEEEeC-----------------CCcEEEEEC
Confidence            6777754445999999887654332211    24578899999 4766554432                 467888998


Q ss_pred             CCCceEEee-cCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEeccC
Q 019290          189 LKKNVTVMY-NGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNSA  267 (343)
Q Consensus       189 ~~~~~~~~~-~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~~~  267 (343)
                      .+++..... ........++++  +..+ ++...++.|..|++.....    ............+++.++|++.++... 
T Consensus       340 ~~~~~~~~~~~h~~~v~~~~~~--~~~l-~s~s~dg~v~vwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~d-  411 (464)
T 3v7d_B          340 ENGELMYTLQGHTALVGLLRLS--DKFL-VSAAADGSIRGWDANDYSR----KFSYHHTNLSAITTFYVSDNILVSGSE-  411 (464)
T ss_dssp             TTTEEEEEECCCSSCEEEEEEC--SSEE-EEEETTSEEEEEETTTCCE----EEEEECTTCCCEEEEEECSSEEEEEET-
T ss_pred             CCCcEEEEEeCCCCcEEEEEEc--CCEE-EEEeCCCcEEEEECCCCce----eeeecCCCCccEEEEEeCCCEEEEecC-
Confidence            777654333 333345566665  4544 4555688999999875221    111112222344677888887776554 


Q ss_pred             CCccccccccccccccCCCcccCCCeEEEECC-CCCEEEEeeCCCCCccCCceeEEEeCCEEEEecCCCCeE
Q 019290          268 RGKIESNKKTAFCEETAKPWFLRDPVGVKFDV-NGNVVDVLDGNEGNTLNSVSEVQEYGEYLYTGSSVQPYV  338 (343)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~~~~i  338 (343)
                                              +.|..+|. +++.+.....+.   ...+..+..+++.+.++......+
T Consensus       412 ------------------------g~i~iwd~~~g~~~~~~~~~~---~~~v~~v~~~~~~l~~~~~~~g~~  456 (464)
T 3v7d_B          412 ------------------------NQFNIYNLRSGKLVHANILKD---ADQIWSVNFKGKTLVAAVEKDGQS  456 (464)
T ss_dssp             ------------------------TEEEEEETTTCCEEESCTTTT---CSEEEEEEEETTEEEEEEEETTEE
T ss_pred             ------------------------CeEEEEECCCCcEEehhhccC---CCcEEEEEecCCEEEEEEEeCCeE
Confidence                                    36777885 566665432221   244556666677777776655433

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=98.24  E-value=0.00043  Score=63.52  Aligned_cols=240  Identities=9%  Similarity=0.058  Sum_probs=133.7

Q ss_pred             CCceEEEcC-CCCeeEEEecCCEEEEEEcCC---CC----eEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCC
Q 019290           36 GPESLAFDC-NGEGPYVGVSDGRILKWKAAN---SG----WTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVT  107 (343)
Q Consensus        36 ~p~~l~~d~-~g~~l~~~~~~g~i~~~d~~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~  107 (343)
                      ...++++.+ +|..+.++..++.|..||..+   +.    ...+                     .....+..+++.+++
T Consensus        65 ~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~---------------------~h~~~v~~~~~~~~~  123 (437)
T 3gre_A           65 SITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY---------------------DCSSTVTQITMIPNF  123 (437)
T ss_dssp             CEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE---------------------ECSSCEEEEEECTTS
T ss_pred             ceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec---------------------cCCCCEEEEEEeCCC
Confidence            577999999 999888888999999998754   21    1111                     112346789999844


Q ss_pred             CeEEEEeCCCeEEEEeCC---CCeEEEcccc--------cCCCCccCcceeE--EeCCCCeEEEEeCCcccccccceeee
Q 019290          108 CDLYIADAYFGLMVVGPN---GGQAQQLASS--------AGGIPFRFTNDLD--IDPNTGIVYFTDSSIYFQRRQYFMSI  174 (343)
Q Consensus       108 ~~l~v~~~~~gi~~~d~~---~~~~~~~~~~--------~~~~~~~~~~~i~--~d~~dg~l~v~~~~~~~~~~~~~~~~  174 (343)
                      ..|..+.....|..+|.+   +++.......        ........+..++  ..+ ++.+.++...            
T Consensus       124 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~------------  190 (437)
T 3gre_A          124 DAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNE-EKSLLVALTN------------  190 (437)
T ss_dssp             SEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECS-SCEEEEEEET------------
T ss_pred             CEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcC-CCCEEEEEeC------------
Confidence            456666433447777763   3332221110        0000112233343  335 3555554332            


Q ss_pred             eecCCCceEEEEeCCCCceEEeec---CCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeee-cCCCCCC
Q 019290          175 ATGDRSGRLLKYDPLKKNVTVMYN---GLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFA-EMPRFPD  250 (343)
Q Consensus       175 ~~~~~~~~v~~~d~~~~~~~~~~~---~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~p~  250 (343)
                           .+.|..||..+++......   .......+++++++..++.+ ..++.|..|++.....   ...+. .......
T Consensus       191 -----d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~-~~dg~i~iwd~~~~~~---~~~~~~~~~~~v~  261 (437)
T 3gre_A          191 -----LSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILG-TTRGIIDIWDIRFNVL---IRSWSFGDHAPIT  261 (437)
T ss_dssp             -----TSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEE-ETTSCEEEEETTTTEE---EEEEBCTTCEEEE
T ss_pred             -----CCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEE-cCCCeEEEEEcCCccE---EEEEecCCCCceE
Confidence                 5678899987766543332   23567889999998866554 5678999999865211   11111 1111122


Q ss_pred             ce----eeCCCCCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECCC-CCEEEEeeCCCCC------------
Q 019290          251 NI----KSDSKGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVN-GNVVDVLDGNEGN------------  313 (343)
Q Consensus       251 ~i----~~d~~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~-g~~~~~~~~~~~~------------  313 (343)
                      .+    .++++|.+.++...                        .+.|..+|.+ ++....+......            
T Consensus       262 ~~~~~~~~s~~~~~l~s~~~------------------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (437)
T 3gre_A          262 HVEVCQFYGKNSVIVVGGSS------------------------KTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKG  317 (437)
T ss_dssp             EEEECTTTCTTEEEEEEEST------------------------TEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSS
T ss_pred             EEEeccccCCCccEEEEEcC------------------------CCcEEEEEcCCCcEEEEEEcCCCCCccceecccccc
Confidence            34    23456766665544                        3456677764 5555554422110            


Q ss_pred             ----------ccCCceeEEEeCCEEEEecCCCCeEEEEc
Q 019290          314 ----------TLNSVSEVQEYGEYLYTGSSVQPYVVVIK  342 (343)
Q Consensus       314 ----------~~~~~~~~~~~~g~l~i~~~~~~~i~~~~  342 (343)
                                ....+..+...++++.++......|.+++
T Consensus       318 l~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd  356 (437)
T 3gre_A          318 LEELNFCGIRSLNALSTISVSNDKILLTDEATSSIVMFS  356 (437)
T ss_dssp             GGGCCCCCCCSGGGGCCEEEETTEEEEEEGGGTEEEEEE
T ss_pred             cccceecccccCCceEEEEECCceEEEecCCCCeEEEEE
Confidence                      12234445555777777777667777765

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=98.23  E-value=4.6e-05  Score=78.51  Aligned_cols=181  Identities=9%  Similarity=0.043  Sum_probs=115.0

Q ss_pred             CCceEEEc-CCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcC-CeeeEEEeCCCCeEEEE
Q 019290           36 GPESLAFD-CNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCG-RPLGIKFNPVTCDLYIA  113 (343)
Q Consensus        36 ~p~~l~~d-~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~gi~~~~~~~~l~v~  113 (343)
                      .+.+++++ ++|+.+.+.. .+.++.++..++....+.                    .... .+..++++ ++..|+++
T Consensus       297 ~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~s-dg~~l~~~  354 (1045)
T 1k32_A          297 SKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVP--------------------EPLRIRYVRRGGD-TKVAFIHG  354 (1045)
T ss_dssp             GGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEECS--------------------CCSCEEEEEECSS-SEEEEEEE
T ss_pred             ccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEEcc--------------------CCCcceEEeeeEc-CCCeEEEE
Confidence            36789999 9998555544 788999988776544331                    1112 34455566 45566666


Q ss_pred             eCCCeEE-EEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCc
Q 019290          114 DAYFGLM-VVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKN  192 (343)
Q Consensus       114 ~~~~gi~-~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~  192 (343)
                      .....++ .++.++++.+.+. . .   ...+..+++.+ ||+..+....                 .+.|+.+|.++++
T Consensus       355 s~~~~l~~~~d~~~~~~~~l~-~-~---~~~~~~~~~Sp-DG~~la~~~~-----------------~~~v~~~d~~tg~  411 (1045)
T 1k32_A          355 TREGDFLGIYDYRTGKAEKFE-E-N---LGNVFAMGVDR-NGKFAVVAND-----------------RFEIMTVDLETGK  411 (1045)
T ss_dssp             ETTEEEEEEEETTTCCEEECC-C-C---CCSEEEEEECT-TSSEEEEEET-----------------TSEEEEEETTTCC
T ss_pred             ECCCceEEEEECCCCCceEec-C-C---ccceeeeEECC-CCCEEEEECC-----------------CCeEEEEECCCCc
Confidence            5545688 8999888776653 1 1   13467899999 5765443222                 4579999998888


Q ss_pred             eEEee-cCCCCcceeEEecCCCEEEEEEcCC---------CeEEEEEccCccccccceeeecCCCCCCceeeCCCCC-EE
Q 019290          193 VTVMY-NGLSFPNGVALSNNNSFLLLAESAT---------LKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGE-FW  261 (343)
Q Consensus       193 ~~~~~-~~~~~~~~i~~~~d~~~lyv~~~~~---------~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-lw  261 (343)
                      ...+. ........++++|||+.|.++....         +.|++|++.+    ++...+.........++++++|+ |+
T Consensus       412 ~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~----g~~~~l~~~~~~~~~~~~spdG~~l~  487 (1045)
T 1k32_A          412 PTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEG----RKIFAATTENSHDYAPAFDADSKNLY  487 (1045)
T ss_dssp             EEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTT----TEEEECSCSSSBEEEEEECTTSCEEE
T ss_pred             eEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCC----CcEEEeeCCCcccCCceEcCCCCEEE
Confidence            77665 3333457899999999887664422         5899999875    22222222111233467888886 55


Q ss_pred             EEec
Q 019290          262 IAMN  265 (343)
Q Consensus       262 i~~~  265 (343)
                      +++.
T Consensus       488 ~~s~  491 (1045)
T 1k32_A          488 YLSY  491 (1045)
T ss_dssp             EEES
T ss_pred             EEec
Confidence            5554

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.21  E-value=0.00046  Score=61.30  Aligned_cols=182  Identities=10%  Similarity=0.111  Sum_probs=99.2

Q ss_pred             cCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCC----CC---eEEEEeC
Q 019290           43 DCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPV----TC---DLYIADA  115 (343)
Q Consensus        43 d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~----~~---~l~v~~~  115 (343)
                      ++...++......++|+.||.+++....+.                      .++++++.+.+.    ++   .+++++.
T Consensus        37 dp~~s~ii~t~k~~gL~Vydl~G~~l~~~~----------------------~g~~nnVD~r~~~~l~g~~~dla~as~R   94 (355)
T 3amr_A           37 TPQNSKLITTNKKSGLVVYSLDGKMLHSYN----------------------TGKLNNVDIRYDFPLNGKKVDIAAASNR   94 (355)
T ss_dssp             CGGGCEEEEEETTTEEEEEETTSCEEEEEC----------------------CSCEEEEEEEEEEEETTEEEEEEEEEEC
T ss_pred             CCCccEEEEEcCCCCEEEEcCCCcEEEEcc----------------------CCCcccEEEecccccCCceEeEEEEeCC
Confidence            445564333445678999999665554442                      134555554430    11   3466655


Q ss_pred             C---CeE--EEEeCCCCeEEEcccc--cCCCCccCcceeEE--eCCCCe--EEEEeCCcccccccceeeeeecCCCceEE
Q 019290          116 Y---FGL--MVVGPNGGQAQQLASS--AGGIPFRFTNDLDI--DPNTGI--VYFTDSSIYFQRRQYFMSIATGDRSGRLL  184 (343)
Q Consensus       116 ~---~gi--~~~d~~~~~~~~~~~~--~~~~~~~~~~~i~~--d~~dg~--l~v~~~~~~~~~~~~~~~~~~~~~~~~v~  184 (343)
                      .   +.|  +.+|+++++++.+...  ........+.+++.  ++..+.  +|+++..                  +.+.
T Consensus        95 ~~~~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~------------------G~~~  156 (355)
T 3amr_A           95 SEGKNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKE------------------GEFE  156 (355)
T ss_dssp             STTCCEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSS------------------SEEE
T ss_pred             CCCCCeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCC------------------CeEE
Confidence            4   334  5558888877766332  10112356888888  764354  5554432                  3333


Q ss_pred             EEeC---CCCce----EEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeec-----CCCCCCce
Q 019290          185 KYDP---LKKNV----TVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAE-----MPRFPDNI  252 (343)
Q Consensus       185 ~~d~---~~~~~----~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~-----~~~~p~~i  252 (343)
                      .|+.   ..+.+    .+-..-...+.++++++..+.||+++.. ..||+|+.+.... ...+.+..     +..-+.||
T Consensus       157 q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Lyv~eEd-~GIw~~da~p~~~-~~~~~v~~~~~g~l~aDvEGL  234 (355)
T 3amr_A          157 QYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLYIAEED-EAIWKFSAEPDGG-SNGTVIDRADGRHLTRDIEGL  234 (355)
T ss_dssp             EEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEEEEETT-TEEEEEECSTTSC-SCCEEEEEBSSSSBCSCEEEE
T ss_pred             EEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEEEeccc-ceEEEEeCCcCCC-CCceEEEEecCCccccCcceE
Confidence            3222   22222    1112234568899999888899999875 5699999664321 12222221     12246788


Q ss_pred             eeC--CCC--CEEEEecc
Q 019290          253 KSD--SKG--EFWIAMNS  266 (343)
Q Consensus       253 ~~d--~~G--~lwi~~~~  266 (343)
                      ++.  ++|  .|++++..
T Consensus       235 ai~~~~~g~gyLivSsQG  252 (355)
T 3amr_A          235 TIYYAADGKGYLMASSQG  252 (355)
T ss_dssp             EEEECGGGCEEEEEEEGG
T ss_pred             EEEecCCCCEEEEEEcCC
Confidence            874  444  46666654

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=98.21  E-value=0.0018  Score=57.26  Aligned_cols=159  Identities=11%  Similarity=-0.007  Sum_probs=90.9

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      ...++.++++  ++.++..++.|..||..++.........               .......+..+++++++..|..+..
T Consensus        16 ~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~---------------~~~h~~~v~~v~~sp~~~~las~s~   78 (330)
T 2hes_X           16 KIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLD---------------ETAHKKAIRSVAWRPHTSLLAAGSF   78 (330)
T ss_dssp             CEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEEC---------------TTCCCSCEEEEEECTTSSEEEEEET
T ss_pred             ceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEe---------------cCCccCCEEEEEECCCCCEEEEEeC
Confidence            3567778776  6778888999999998765433221100               0012234678999984334445533


Q ss_pred             CCeEEEEeCCCCeE-----EEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCC-
Q 019290          116 YFGLMVVGPNGGQA-----QQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPL-  189 (343)
Q Consensus       116 ~~gi~~~d~~~~~~-----~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~-  189 (343)
                      ...|..++.++...     +.+ ....+ ....+..+++.+ +|++.++...                 .+.|..+|.. 
T Consensus        79 D~~v~iw~~~~~~~~~~~~~~~-~~~~~-h~~~V~~v~~sp-~g~~las~s~-----------------D~~v~iwd~~~  138 (330)
T 2hes_X           79 DSTVSIWAKEESADRTFEMDLL-AIIEG-HENEVKGVAWSN-DGYYLATCSR-----------------DKSVWIWETDE  138 (330)
T ss_dssp             TSCEEEEEC-------CCCEEE-EEEC-----CEEEEEECT-TSCEEEEEET-----------------TSCEEEEECCT
T ss_pred             CCcEEEEEcccCcCccccceeE-EEEcC-CCCcEEEEEECC-CCCEEEEEeC-----------------CCEEEEEeccC
Confidence            33488888753211     111 11111 123578899999 5877665433                 4567777763 


Q ss_pred             CC---ce-EEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290          190 KK---NV-TVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQG  232 (343)
Q Consensus       190 ~~---~~-~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~  232 (343)
                      .+   +. ..+.........++++|++..| ++...++.|..|+...
T Consensus       139 ~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l-~s~s~D~~i~iW~~~~  184 (330)
T 2hes_X          139 SGEEYECISVLQEHSQDVKHVIWHPSEALL-ASSSYDDTVRIWKDYD  184 (330)
T ss_dssp             TCCCCEEEEEECCCSSCEEEEEECSSSSEE-EEEETTSCEEEEEEET
T ss_pred             CCCCeEEEEEeccCCCceEEEEECCCCCEE-EEEcCCCeEEEEECCC
Confidence            22   11 2233334557889999998755 4555688999998654

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=98.21  E-value=0.00071  Score=60.07  Aligned_cols=183  Identities=9%  Similarity=-0.042  Sum_probs=106.7

Q ss_pred             CCCCeeEEEecCCEEEEEEcCCCCeE-EeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCCCeEEEE
Q 019290           44 CNGEGPYVGVSDGRILKWKAANSGWT-EFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFGLMVV  122 (343)
Q Consensus        44 ~~g~~l~~~~~~g~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~~gi~~~  122 (343)
                      .+++.+.++..++.|..||..+++.. .+.....               ......|. +.-...++.+.+-+....+..+
T Consensus        46 ~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~v---------------~~~~~~~~-~~s~s~D~~i~~w~~~~~~~~~  109 (343)
T 3lrv_A           46 YDKWVCMCRCEDGALHFTQLKDSKTITTITTPNP---------------RTGGEHPA-IISRGPCNRLLLLYPGNQITIL  109 (343)
T ss_dssp             EEEEEEEEEEETTEEEEEEESSSSCEEEEEEECC---------------CTTCCCCS-EEEECSTTEEEEEETTTEEEEE
T ss_pred             CCCCEEEEECCCCcEEEEECCCCcEEEEEecCCc---------------eeeeeCCc-eEEecCCCeEEEEEccCceEEe
Confidence            46777888899999999998776533 2221000               01111122 3333336676666655667778


Q ss_pred             eCCCCeEEEcccccCCCCccCcceeEEeC--CCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEeec--
Q 019290          123 GPNGGQAQQLASSAGGIPFRFTNDLDIDP--NTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYN--  198 (343)
Q Consensus       123 d~~~~~~~~~~~~~~~~~~~~~~~i~~d~--~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~--  198 (343)
                      +.++++.........   ...+..+++.+  . +.++++...                 .+.|..||..+++......  
T Consensus       110 ~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~-~~~l~s~s~-----------------dg~i~~wd~~~~~~~~~~~~~  168 (343)
T 3lrv_A          110 DSKTNKVLREIEVDS---ANEIIYMYGHNEVN-TEYFIWADN-----------------RGTIGFQSYEDDSQYIVHSAK  168 (343)
T ss_dssp             ETTTCCEEEEEECCC---SSCEEEEECCC----CCEEEEEET-----------------TCCEEEEESSSSCEEEEECCC
T ss_pred             ecCCcceeEEeecCC---CCCEEEEEcCCCCC-CCEEEEEeC-----------------CCcEEEEECCCCcEEEEEecC
Confidence            877776322211111   12477888888  6 666664432                 4578888887776643332  


Q ss_pred             CCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeec-CCCCCCceeeCCCCCEEEEecc
Q 019290          199 GLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAE-MPRFPDNIKSDSKGEFWIAMNS  266 (343)
Q Consensus       199 ~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~G~lwi~~~~  266 (343)
                      .......++++|++..+ ++...++.|..||+..... . ...+.. ..+....+++.++|++.++...
T Consensus       169 ~~~~i~~~~~~pdg~~l-asg~~dg~i~iwd~~~~~~-~-~~~~~~~h~~~v~~l~fs~~g~~l~s~~~  234 (343)
T 3lrv_A          169 SDVEYSSGVLHKDSLLL-ALYSPDGILDVYNLSSPDQ-A-SSRFPVDEEAKIKEVKFADNGYWMVVECD  234 (343)
T ss_dssp             SSCCCCEEEECTTSCEE-EEECTTSCEEEEESSCTTS-C-CEECCCCTTSCEEEEEECTTSSEEEEEES
T ss_pred             CCCceEEEEECCCCCEE-EEEcCCCEEEEEECCCCCC-C-ccEEeccCCCCEEEEEEeCCCCEEEEEeC
Confidence            22347789999998754 4556789999999875322 1 012211 1222445778999987776654

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=98.21  E-value=0.00017  Score=63.43  Aligned_cols=161  Identities=14%  Similarity=0.021  Sum_probs=92.1

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCC--CCeEEEE
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPV--TCDLYIA  113 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~--~~~l~v~  113 (343)
                      ...+++++++|+.+.++..++.|..||..++....+..                 .......+..+++.++  ++.|..+
T Consensus        15 ~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~-----------------l~gH~~~V~~v~~~~~~~~~~l~s~   77 (316)
T 3bg1_A           15 MIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIAD-----------------LRGHEGPVWQVAWAHPMYGNILASC   77 (316)
T ss_dssp             CEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEE-----------------EECCSSCEEEEEECCGGGSSCEEEE
T ss_pred             eEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEE-----------------EcCCCccEEEEEeCCCCCCCEEEEE
Confidence            46789999999988888999999999987653221110                 0112234677888642  3345555


Q ss_pred             eCCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCC-CeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCc
Q 019290          114 DAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNT-GIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKN  192 (343)
Q Consensus       114 ~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~d-g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~  192 (343)
                      .....|..+|.++++.+..... .+ ....++.+++.+.+ +.+.++...                 .+.|..+|..++.
T Consensus        78 s~D~~v~iWd~~~~~~~~~~~~-~~-h~~~V~~v~~~p~~~g~~lasgs~-----------------D~~i~lwd~~~~~  138 (316)
T 3bg1_A           78 SYDRKVIIWREENGTWEKSHEH-AG-HDSSVNSVCWAPHDYGLILACGSS-----------------DGAISLLTYTGEG  138 (316)
T ss_dssp             ETTSCEEEECCSSSCCCEEEEE-CC-CSSCCCEEEECCTTTCSCEEEECS-----------------SSCEEEEEECSSS
T ss_pred             ECCCEEEEEECCCCcceEEEEc-cC-CCCceEEEEECCCCCCcEEEEEcC-----------------CCCEEEEecCCCC
Confidence            4334488999887643222111 11 11357889998831 555554432                 3456666654332


Q ss_pred             -eEE---eecCCCCcceeEEecCC----------------CEEEEEEcCCCeEEEEEccC
Q 019290          193 -VTV---MYNGLSFPNGVALSNNN----------------SFLLLAESATLKILRFWLQG  232 (343)
Q Consensus       193 -~~~---~~~~~~~~~~i~~~~d~----------------~~lyv~~~~~~~i~~~~~~~  232 (343)
                       ...   +.........++++|+.                ..++++...++.|..|++..
T Consensus       139 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~  198 (316)
T 3bg1_A          139 QWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEE  198 (316)
T ss_dssp             CEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECT
T ss_pred             CcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCC
Confidence             211   11122234566777652                12455666778899998753

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=98.20  E-value=0.00048  Score=67.81  Aligned_cols=192  Identities=9%  Similarity=0.013  Sum_probs=106.0

Q ss_pred             CceEEEcCCCCeeEEE-ecCC----EEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEE
Q 019290           37 PESLAFDCNGEGPYVG-VSDG----RILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLY  111 (343)
Q Consensus        37 p~~l~~d~~g~~l~~~-~~~g----~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~  111 (343)
                      ..+++++|||+.+.+. ...|    .|+.+|..+++........                    ....++++++++..|+
T Consensus       127 ~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~--------------------~~~~~~~wspDg~~l~  186 (710)
T 2xdw_A          127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER--------------------VKFSCMAWTHDGKGMF  186 (710)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE--------------------ECSCCEEECTTSSEEE
T ss_pred             EEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC--------------------cccceEEEEeCCCEEE
Confidence            4578899999965543 3333    7999999887665432100                    0124578888556777


Q ss_pred             EEeCCCe----------------EEEEeCCCCeEE--EcccccCCCCccCcceeEEeCCCCe-EEEEeCCccccccccee
Q 019290          112 IADAYFG----------------LMVVGPNGGQAQ--QLASSAGGIPFRFTNDLDIDPNTGI-VYFTDSSIYFQRRQYFM  172 (343)
Q Consensus       112 v~~~~~g----------------i~~~d~~~~~~~--~~~~~~~~~~~~~~~~i~~d~~dg~-l~v~~~~~~~~~~~~~~  172 (343)
                      ++.....                |+++++.+++.+  .+......  .....++.+.+ ||+ |+++....         
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~--~~~~~~~~~Sp-Dg~~l~~~~~~~---------  254 (710)
T 2xdw_A          187 YNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDE--PKWMGGAELSD-DGRYVLLSIREG---------  254 (710)
T ss_dssp             EEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTC--TTCEEEEEECT-TSCEEEEEEECS---------
T ss_pred             EEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCC--CeEEEEEEEcC-CCCEEEEEEEcc---------
Confidence            7753322                899998876521  22111111  12345788888 566 44432210         


Q ss_pred             eeeecCCCceEEEEeCCC------C--ceEEeecCCCCcceeEEecCCCEEEEEEcC---CCeEEEEEccCcccccccee
Q 019290          173 SIATGDRSGRLLKYDPLK------K--NVTVMYNGLSFPNGVALSNNNSFLLLAESA---TLKILRFWLQGERTTYTPQL  241 (343)
Q Consensus       173 ~~~~~~~~~~v~~~d~~~------~--~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~---~~~i~~~~~~~~~~~~~~~~  241 (343)
                          ......|+.+|.++      +  ..+.+....... ...++++|+.+|+....   ...|+++++++... ...+.
T Consensus       255 ----~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~-~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~-~~~~~  328 (710)
T 2xdw_A          255 ----CDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGE-YDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEE-SKWKV  328 (710)
T ss_dssp             ----SSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSC-EEEEEEETTEEEEEECTTCTTCEEEEEETTSCCG-GGCEE
T ss_pred             ----CCCccEEEEEECcccccccCCccceEEeeCCCCcE-EEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCc-cccee
Confidence                00134688888765      4  345554333222 33578899988887653   34799999875321 12233


Q ss_pred             eec-CC-CCCCceeeCCCCCEEEEecc
Q 019290          242 FAE-MP-RFPDNIKSDSKGEFWIAMNS  266 (343)
Q Consensus       242 ~~~-~~-~~p~~i~~d~~G~lwi~~~~  266 (343)
                      +.. .. ....++...+++.++++...
T Consensus       329 l~~~~~~~~~~~~~~~~~~~lv~~~~~  355 (710)
T 2xdw_A          329 LVPEHEKDVLEWVACVRSNFLVLCYLH  355 (710)
T ss_dssp             EECCCSSCEEEEEEEETTTEEEEEEEE
T ss_pred             ccCCCCCCeEEEEEEEcCCEEEEEEEE
Confidence            322 11 11233455556667666544

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=98.20  E-value=0.0001  Score=72.58  Aligned_cols=73  Identities=11%  Similarity=0.124  Sum_probs=51.2

Q ss_pred             CceEEEcCCCCeeEEEec---------CCEEEEEEcCCCCe---EEeeecCCCccccccCCCCCcccCCCcCCeeeEEEe
Q 019290           37 PESLAFDCNGEGPYVGVS---------DGRILKWKAANSGW---TEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFN  104 (343)
Q Consensus        37 p~~l~~d~~g~~l~~~~~---------~g~i~~~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~  104 (343)
                      ..+++++|||+.+.++..         ++.|+.+|..+++.   ..+                       ......++++
T Consensus        62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l-----------------------~~~~~~~~~S  118 (719)
T 1z68_A           62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL-----------------------PRPIQYLCWS  118 (719)
T ss_dssp             CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC-----------------------CSSBCCEEEC
T ss_pred             eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec-----------------------CcccccceEC
Confidence            678999999996665544         57899999887653   111                       1234568899


Q ss_pred             CCCCeEEEEeCCCeEEEEeCCCCeEEEcc
Q 019290          105 PVTCDLYIADAYFGLMVVGPNGGQAQQLA  133 (343)
Q Consensus       105 ~~~~~l~v~~~~~gi~~~d~~~~~~~~~~  133 (343)
                      +++..|.++. .+.|+.++.++++...+.
T Consensus       119 PDG~~la~~~-~~~i~~~~~~~g~~~~l~  146 (719)
T 1z68_A          119 PVGSKLAYVY-QNNIYLKQRPGDPPFQIT  146 (719)
T ss_dssp             SSTTCEEEEE-TTEEEEESSTTSCCEECC
T ss_pred             CCCCEEEEEE-CCeEEEEeCCCCCcEEEe
Confidence            9555676663 567999999888766553

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=98.20  E-value=0.0047  Score=58.67  Aligned_cols=219  Identities=11%  Similarity=0.048  Sum_probs=117.7

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCe----------EEeeecCCCccccccCCCCCcccC-CCcCCeeeEEEe
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGW----------TEFATTAPHRAREICDGSTNTTLE-PLCGRPLGIKFN  104 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~gi~~~  104 (343)
                      ...+++++|||+.+-++..++.|.  |+...+.          ..|.+......-..-.+....... .....+..++++
T Consensus        17 ~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~~vawS   94 (588)
T 2j04_A           17 WKNNLTWARDGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPRVCKPS   94 (588)
T ss_dssp             SSCCEEECTTSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEEEEEEC
T ss_pred             cEEEEEECCCCCEEEEEcCCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEEEEEEC
Confidence            578999999999555556666554  5554320          111111100000000011111111 113346789999


Q ss_pred             CCCCeEEEEeCCCeEEEEeCCCCeEEEcccccCC-CCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceE
Q 019290          105 PVTCDLYIADAYFGLMVVGPNGGQAQQLASSAGG-IPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRL  183 (343)
Q Consensus       105 ~~~~~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~-~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v  183 (343)
                      |++..|-+++....+..++.++ ....+.  ... .+...++++++.| ||++.++...                 .+.|
T Consensus        95 PdG~~LAs~s~dg~V~iwd~~~-~l~~l~--~~~~~~~~sv~svafSP-DG~~LAsgs~-----------------DGtV  153 (588)
T 2j04_A           95 PIDDWMAVLSNNGNVSVFKDNK-MLTNLD--SKGNLSSRTYHCFEWNP-IESSIVVGNE-----------------DGEL  153 (588)
T ss_dssp             SSSSCEEEEETTSCEEEEETTE-EEEECC--CSSCSTTTCEEEEEECS-SSSCEEEEET-----------------TSEE
T ss_pred             CCCCEEEEEeCCCcEEEEeCCc-eeeecc--CCCccccccEEEEEEcC-CCCEEEEEcC-----------------CCEE
Confidence            9555566665444488888653 333321  111 0123578999999 5775554332                 4678


Q ss_pred             EEEeCCCCce--------EEeecC----CCCcceeEEecCCCEEEEEEcCCCeEEEEEccCcccccc-ceeeec-CCCCC
Q 019290          184 LKYDPLKKNV--------TVMYNG----LSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYT-PQLFAE-MPRFP  249 (343)
Q Consensus       184 ~~~d~~~~~~--------~~~~~~----~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~-~~~~~~-~~~~p  249 (343)
                      -.||..++..        ..+...    ......++++|||  + ++...++.+..|++++... .+ ...+.. .....
T Consensus       154 kIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--L-aass~D~tVrlWd~~~~~~-~~~~~tL~~~h~~~V  229 (588)
T 2j04_A          154 QFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--L-VAALSNNSVFSMTVSASSH-QPVSRMIQNASRRKI  229 (588)
T ss_dssp             EEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--E-EEEETTCCEEEECCCSSSS-CCCEEEEECCCSSCC
T ss_pred             EEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--E-EEEeCCCeEEEEECCCCcc-ccceeeecccccCcE
Confidence            8888876642        333212    2357889999988  4 4455689999999876432 11 112211 11235


Q ss_pred             CceeeCCCCCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECCCCCEEEEee
Q 019290          250 DNIKSDSKGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLD  308 (343)
Q Consensus       250 ~~i~~d~~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~  308 (343)
                      ..+++.  |+..+++..                         +.|..+|.++.....+.
T Consensus       230 ~svaFs--g~~LASa~~-------------------------~tIkLWd~~~~~~~~~~  261 (588)
T 2j04_A          230 TDLKIV--DYKVVLTCP-------------------------GYVHKIDLKNYSISSLK  261 (588)
T ss_dssp             CCEEEE--TTEEEEECS-------------------------SEEEEEETTTTEEEEEE
T ss_pred             EEEEEE--CCEEEEEeC-------------------------CeEEEEECCCCeEEEEE
Confidence            566665  455554433                         37778888766654443

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=98.20  E-value=0.0012  Score=57.53  Aligned_cols=163  Identities=11%  Similarity=0.027  Sum_probs=95.1

Q ss_pred             CCceEEEcC--CCCeeEEEecCCEEEEEEcCCCCe-------EEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCC
Q 019290           36 GPESLAFDC--NGEGPYVGVSDGRILKWKAANSGW-------TEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPV  106 (343)
Q Consensus        36 ~p~~l~~d~--~g~~l~~~~~~g~i~~~d~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~  106 (343)
                      ...++++.+  +++.+.++..++.|..||..++..       ..+..                 .......+..++++++
T Consensus        59 ~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~-----------------~~~~~~~v~~~~~~~~  121 (351)
T 3f3f_A           59 SIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCT-----------------LNDSKGSLYSVKFAPA  121 (351)
T ss_dssp             CEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEE-----------------ECCCSSCEEEEEECCG
T ss_pred             cEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeee-----------------ecccCCceeEEEEcCC
Confidence            467899988  588788888999999999876431       11110                 0122335678999984


Q ss_pred             --CCeEEEEeCCCeEEEEeCCCCeEEEc---------ccccCCCCccCcceeEEeCC--CCeEEEEeCCcccccccceee
Q 019290          107 --TCDLYIADAYFGLMVVGPNGGQAQQL---------ASSAGGIPFRFTNDLDIDPN--TGIVYFTDSSIYFQRRQYFMS  173 (343)
Q Consensus       107 --~~~l~v~~~~~gi~~~d~~~~~~~~~---------~~~~~~~~~~~~~~i~~d~~--dg~l~v~~~~~~~~~~~~~~~  173 (343)
                        +..++.+.....|..+|.++++....         ...........+..+++.+.  ++.++++...           
T Consensus       122 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~-----------  190 (351)
T 3f3f_A          122 HLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSAL-----------  190 (351)
T ss_dssp             GGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEET-----------
T ss_pred             CCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecC-----------
Confidence              34466664434489999876542110         00111112345677777772  1444443222           


Q ss_pred             eeecCCCceEEEEeCCCCceE---EeecCCCCcceeEEecCCC---EEEEEEcCCCeEEEEEccC
Q 019290          174 IATGDRSGRLLKYDPLKKNVT---VMYNGLSFPNGVALSNNNS---FLLLAESATLKILRFWLQG  232 (343)
Q Consensus       174 ~~~~~~~~~v~~~d~~~~~~~---~~~~~~~~~~~i~~~~d~~---~lyv~~~~~~~i~~~~~~~  232 (343)
                            .+.+..++...++..   .+.........+++++++.   .++++...++.|..|++..
T Consensus       191 ------~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~  249 (351)
T 3f3f_A          191 ------EQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITE  249 (351)
T ss_dssp             ------TEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEE
T ss_pred             ------CCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCC
Confidence                  344544554445432   2222334567899999872   4556666788999999864

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.17  E-value=0.0016  Score=62.52  Aligned_cols=41  Identities=15%  Similarity=0.113  Sum_probs=26.4

Q ss_pred             CeEEEECC-CCCEEEEeeCCCCCccCCceeEEEeCCEEEEecCC
Q 019290          292 PVGVKFDV-NGNVVDVLDGNEGNTLNSVSEVQEYGEYLYTGSSV  334 (343)
Q Consensus       292 ~~v~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~  334 (343)
                      +.|+.+|. +|+++-.+..+.+.....+.  ...+|++|++...
T Consensus       485 g~l~a~D~~tG~~lw~~~~~~~~~~~p~~--~~~~G~~yv~~~~  526 (571)
T 2ad6_A          485 GYLKALDNKDGKELWNFKMPSGGIGSPMT--YSFKGKQYIGSMY  526 (571)
T ss_dssp             SEEEEEETTTCCEEEEEECSSCCCSCCEE--EEETTEEEEEEEE
T ss_pred             CeEEEEECCCCCEEEEEeCCCCcEeeeEE--EEECCEEEEEEEC
Confidence            58889996 68888777765442222222  2348999987653

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=98.16  E-value=0.00056  Score=61.59  Aligned_cols=154  Identities=10%  Similarity=0.102  Sum_probs=95.0

Q ss_pred             CCceEEEcC-CCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCC---CCeEE
Q 019290           36 GPESLAFDC-NGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPV---TCDLY  111 (343)
Q Consensus        36 ~p~~l~~d~-~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~---~~~l~  111 (343)
                      ...++++.+ +++.++++..++.|..||..+++......                    .......+.+.+.   ...+.
T Consensus       101 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~  160 (408)
T 4a11_B          101 SVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN--------------------FEETVYSHHMSPVSTKHCLVA  160 (408)
T ss_dssp             CEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE--------------------CSSCEEEEEECSSCSSCCEEE
T ss_pred             cEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc--------------------CCCceeeeEeecCCCCCcEEE
Confidence            467899999 67777788889999999998765443321                    1112345666552   22455


Q ss_pred             EEeCCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCe-EEEEeCCcccccccceeeeeecCCCceEEEEeCCC
Q 019290          112 IADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGI-VYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLK  190 (343)
Q Consensus       112 v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~  190 (343)
                      ++.....|..+|.++++........    ...+..+++.+. +. ++++...                 .+.|..||..+
T Consensus       161 ~~~~~~~v~~~d~~~~~~~~~~~~~----~~~v~~~~~~~~-~~~ll~~~~~-----------------dg~i~i~d~~~  218 (408)
T 4a11_B          161 VGTRGPKVQLCDLKSGSCSHILQGH----RQEILAVSWSPR-YDYILATASA-----------------DSRVKLWDVRR  218 (408)
T ss_dssp             EEESSSSEEEEESSSSCCCEEECCC----CSCEEEEEECSS-CTTEEEEEET-----------------TSCEEEEETTC
T ss_pred             EEcCCCeEEEEeCCCcceeeeecCC----CCcEEEEEECCC-CCcEEEEEcC-----------------CCcEEEEECCC
Confidence            5544444999999876543222211    135778999984 65 4543322                 45677777654


Q ss_pred             Cc--eEEe---------------ecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290          191 KN--VTVM---------------YNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQG  232 (343)
Q Consensus       191 ~~--~~~~---------------~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~  232 (343)
                      +.  ...+               .........++++++++.++.+. .++.|..|++..
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~  276 (408)
T 4a11_B          219 ASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVG-TDNRMRLWNSSN  276 (408)
T ss_dssp             SSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTT
T ss_pred             CCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEec-CCCeEEEEECCC
Confidence            32  1111               11223457889999988766554 578899999875

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=98.15  E-value=3.7e-05  Score=75.70  Aligned_cols=139  Identities=12%  Similarity=0.046  Sum_probs=89.4

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      .+.++.+.++|. +++...++.|+.+|..+++...+......                .......++++++++.|.++..
T Consensus        17 ~~~~~~~s~dg~-~~~~~~d~~i~~~~~~~g~~~~~~~~~~~----------------~~~~~~~~~~SpDg~~la~~~~   79 (719)
T 1z68_A           17 KTFFPNWISGQE-YLHQSADNNIVLYNIETGQSYTILSNRTM----------------KSVNASNYGLSPDRQFVYLESD   79 (719)
T ss_dssp             CCCCCEESSSSE-EEEECTTSCEEEEESSSCCEEEEECHHHH----------------HTTTCSEEEECTTSSEEEEEEE
T ss_pred             CCCccEECCCCe-EEEEcCCCCEEEEEcCCCcEEEEEccccc----------------cccceeeEEECCCCCeEEEEec
Confidence            355889999997 44445688999999988776655321100                0012457889985556666643


Q ss_pred             ---------CCeEEEEeCCCCeE---EEcccccCCCCccCcceeEEeCCCCe-EEEEeCCcccccccceeeeeecCCCce
Q 019290          116 ---------YFGLMVVGPNGGQA---QQLASSAGGIPFRFTNDLDIDPNTGI-VYFTDSSIYFQRRQYFMSIATGDRSGR  182 (343)
Q Consensus       116 ---------~~gi~~~d~~~~~~---~~~~~~~~~~~~~~~~~i~~d~~dg~-l~v~~~~~~~~~~~~~~~~~~~~~~~~  182 (343)
                               ...|+.+|.++++.   ..+.        ..+..+++.| ||+ |.++.                   .+.
T Consensus        80 ~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~--------~~~~~~~~SP-DG~~la~~~-------------------~~~  131 (719)
T 1z68_A           80 YSKLWRYSYTATYYIYDLSNGEFVRGNELP--------RPIQYLCWSP-VGSKLAYVY-------------------QNN  131 (719)
T ss_dssp             EEECSSSCEEEEEEEEETTTTEECCSSCCC--------SSBCCEEECS-STTCEEEEE-------------------TTE
T ss_pred             CceeEEeecceEEEEEECCCCccccceecC--------cccccceECC-CCCEEEEEE-------------------CCe
Confidence                     13489999998876   3221        2367789999 575 44432                   346


Q ss_pred             EEEEeCCCCceEEeecCCC-------------------CcceeEEecCCCEEEEEE
Q 019290          183 LLKYDPLKKNVTVMYNGLS-------------------FPNGVALSNNNSFLLLAE  219 (343)
Q Consensus       183 v~~~d~~~~~~~~~~~~~~-------------------~~~~i~~~~d~~~lyv~~  219 (343)
                      |+.++..+++...+.....                   ...+++++|||+.|+++.
T Consensus       132 i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~  187 (719)
T 1z68_A          132 IYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAE  187 (719)
T ss_dssp             EEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEE
T ss_pred             EEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEE
Confidence            8888887776655432221                   124799999999887754

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=98.14  E-value=0.0026  Score=56.86  Aligned_cols=227  Identities=10%  Similarity=-0.025  Sum_probs=122.6

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      ...+++++++|+.+.++.. .++..|+.++.+......                   .  .....+.+....+.+.++..
T Consensus        21 ~V~~v~fs~dg~~la~g~~-~~~~iw~~~~~~~~~~~~-------------------~--~~~~~~~~~~~~~~~~~~~~   78 (355)
T 3vu4_A           21 PVTDYEFNQDQSCLILSTL-KSFEIYNVHPVAHIMSQE-------------------M--RHLSKVRMLHRTNYVAFVTG   78 (355)
T ss_dssp             CCCEEEECTTSSEEEEECS-SEEEEEEETTEEEEEEEE-------------------C--SCCCEEEECTTSSEEEEECS
T ss_pred             ceEEEEECCCCCEEEEEcC-CEEEEEecCCcceeeeee-------------------c--CCeEEEEEcCCCCEEEEEEC
Confidence            5789999999996656554 457788866543221110                   0  01234555553455544433


Q ss_pred             C-CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCC-ce
Q 019290          116 Y-FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKK-NV  193 (343)
Q Consensus       116 ~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~-~~  193 (343)
                      . ..|..+|..+++.......  .   ..+..+.+++  +.+.++.                   .+.|..||..++ +.
T Consensus        79 ~d~~v~iWd~~~~~~~~~~~~--~---~~v~~v~~~~--~~~~~~~-------------------~~~i~i~d~~~~~~~  132 (355)
T 3vu4_A           79 VKEVVHIWDDVKKQDVSRIKV--D---APVKDLFLSR--EFIVVSY-------------------GDVISVFKFGNPWKR  132 (355)
T ss_dssp             STTEEEEEETTTTEEEEEEEC--S---SCEEEEEECS--SEEEEEE-------------------TTEEEEEESSTTCCB
T ss_pred             CccEEEEEECCCCcEEEEEEC--C---CceEEEEEcC--CEEEEEE-------------------cCEEEEEECCCCcee
Confidence            3 3589999988865432221  1   2466778877  3555533                   245777887654 22


Q ss_pred             -EEeecCCCCcce-eEEecCCCEEEEE-EcCCCeEEEEEccCcccc-----c-------c-ceeeecCCCCCCceeeCCC
Q 019290          194 -TVMYNGLSFPNG-VALSNNNSFLLLA-ESATLKILRFWLQGERTT-----Y-------T-PQLFAEMPRFPDNIKSDSK  257 (343)
Q Consensus       194 -~~~~~~~~~~~~-i~~~~d~~~lyv~-~~~~~~i~~~~~~~~~~~-----~-------~-~~~~~~~~~~p~~i~~d~~  257 (343)
                       ..+..    +.+ .++++  ..+.++ ....+.|..|++......     .       . ...+....+....++++++
T Consensus       133 ~~~~~~----~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~  206 (355)
T 3vu4_A          133 ITDDIR----FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRK  206 (355)
T ss_dssp             SSCCEE----EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTT
T ss_pred             eEEecc----CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCC
Confidence             12111    333 34444  445554 567889999998752200     0       0 1222111222345778999


Q ss_pred             CCEEEEeccCCCccccccccccccccCCCcccCCCe-EEEECC-CCCEEEEeeCCCCCccCCceeEEEe-CCEEEEecCC
Q 019290          258 GEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPV-GVKFDV-NGNVVDVLDGNEGNTLNSVSEVQEY-GEYLYTGSSV  334 (343)
Q Consensus       258 G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~  334 (343)
                      |++.++...                        .+. |..+|. +++.+..+...  .....+..+... ++++.++...
T Consensus       207 g~~l~s~s~------------------------d~~~v~iwd~~~~~~~~~~~~g--~h~~~v~~~~~s~~~~~l~s~s~  260 (355)
T 3vu4_A          207 SDMVATCSQ------------------------DGTIIRVFKTEDGVLVREFRRG--LDRADVVDMKWSTDGSKLAVVSD  260 (355)
T ss_dssp             SSEEEEEET------------------------TCSEEEEEETTTCCEEEEEECT--TCCSCEEEEEECTTSCEEEEEET
T ss_pred             CCEEEEEeC------------------------CCCEEEEEECCCCcEEEEEEcC--CCCCcEEEEEECCCCCEEEEEEC
Confidence            988777665                        344 666776 46766666521  012345555444 5555555555


Q ss_pred             CCeEEEEc
Q 019290          335 QPYVVVIK  342 (343)
Q Consensus       335 ~~~i~~~~  342 (343)
                      ...|.+++
T Consensus       261 d~~v~iw~  268 (355)
T 3vu4_A          261 KWTLHVFE  268 (355)
T ss_dssp             TCEEEEEE
T ss_pred             CCEEEEEE
Confidence            55666554

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.12  E-value=0.00051  Score=61.02  Aligned_cols=187  Identities=18%  Similarity=0.253  Sum_probs=108.2

Q ss_pred             CCeEEEEe-CCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCC---CC----eEEEEeCCcccccccceeeeeecC
Q 019290          107 TCDLYIAD-AYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPN---TG----IVYFTDSSIYFQRRQYFMSIATGD  178 (343)
Q Consensus       107 ~~~l~v~~-~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~---dg----~l~v~~~~~~~~~~~~~~~~~~~~  178 (343)
                      ...+++++ ...||+.||+++..++.+..       ..+|.+.+.+.   .|    .+++++...             +.
T Consensus        39 ~~s~ii~t~k~~gL~Vydl~G~~l~~~~~-------g~~nnVD~r~~~~l~g~~~dla~as~R~~-------------~~   98 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSLDGKMLHSYNT-------GKLNNVDIRYDFPLNGKKVDIAAASNRSE-------------GK   98 (355)
T ss_dssp             GGCEEEEEETTTEEEEEETTSCEEEEECC-------SCEEEEEEEEEEEETTEEEEEEEEEECST-------------TC
T ss_pred             CccEEEEEcCCCCEEEEcCCCcEEEEccC-------CCcccEEEecccccCCceEeEEEEeCCCC-------------CC
Confidence            34556653 34689999996555554421       23555555541   01    245555320             01


Q ss_pred             CCceEEEEeCCCCceEEee-------cCCCCcceeEE--ecCCC--EEEEEEcCCCeEEEEEccC--ccccccceeee--
Q 019290          179 RSGRLLKYDPLKKNVTVMY-------NGLSFPNGVAL--SNNNS--FLLLAESATLKILRFWLQG--ERTTYTPQLFA--  243 (343)
Q Consensus       179 ~~~~v~~~d~~~~~~~~~~-------~~~~~~~~i~~--~~d~~--~lyv~~~~~~~i~~~~~~~--~~~~~~~~~~~--  243 (343)
                      ..-.+|.+|++++.+..+.       ..+..+.|+|+  ++..+  ++|+++ .++.+..|++..  +.. ...+.+.  
T Consensus        99 n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~-k~G~~~q~~l~~~~~g~-~~~~lVR~f  176 (355)
T 3amr_A           99 NTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTG-KEGEFEQYELKADKNGY-ISGKKVRAF  176 (355)
T ss_dssp             CEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEEC-SSSEEEEEEEEECTTSC-EEEEEEEEE
T ss_pred             CeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEEC-CCCeEEEEEEEeCCCCc-ccceEEEEe
Confidence            1234666788877776552       33477899999  55444  456655 468999988742  211 1112221  


Q ss_pred             cCCCCCCceeeCC-CCCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECC--CC----CEEEEeeCCCCCccC
Q 019290          244 EMPRFPDNIKSDS-KGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDV--NG----NVVDVLDGNEGNTLN  316 (343)
Q Consensus       244 ~~~~~p~~i~~d~-~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~--~g----~~~~~~~~~~~~~~~  316 (343)
                      .+.+.|.++++|+ .|.||++...                         .+|.+|+.  ++    +.+..+.  .+....
T Consensus       177 ~lgsq~EgcvvDd~~g~Lyv~eEd-------------------------~GIw~~da~p~~~~~~~~v~~~~--~g~l~a  229 (355)
T 3amr_A          177 KMNSQTEGMAADDEYGRLYIAEED-------------------------EAIWKFSAEPDGGSNGTVIDRAD--GRHLTR  229 (355)
T ss_dssp             ECSSCEEEEEEETTTTEEEEEETT-------------------------TEEEEEECSTTSCSCCEEEEEBS--SSSBCS
T ss_pred             cCCCCcceEEEcCCCCeEEEeccc-------------------------ceEEEEeCCcCCCCCceEEEEec--CCcccc
Confidence            2455688999986 5899999875                         37899984  33    2333332  121222


Q ss_pred             CceeEEEe-----CCEEEEecCCCCeEEEEc
Q 019290          317 SVSEVQEY-----GEYLYTGSSVQPYVVVIK  342 (343)
Q Consensus       317 ~~~~~~~~-----~g~l~i~~~~~~~i~~~~  342 (343)
                      .+.++..+     .++|++++-..++..+|+
T Consensus       230 DvEGLai~~~~~g~gyLivSsQG~~s~~Vyd  260 (355)
T 3amr_A          230 DIEGLTIYYAADGKGYLMASSQGNSSYAIYD  260 (355)
T ss_dssp             CEEEEEEEECGGGCEEEEEEEGGGTEEEEEE
T ss_pred             CcceEEEEecCCCCEEEEEEcCCCCEEEEEE
Confidence            34444332     257999998888888886

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=98.12  E-value=3.1e-05  Score=72.87  Aligned_cols=122  Identities=16%  Similarity=0.222  Sum_probs=81.9

Q ss_pred             cCCeeeEEEeCCCCeEEEEeCC---------------------Ce-EEEEeCCCC-----e--EEEcccc--c-------
Q 019290           95 CGRPLGIKFNPVTCDLYIADAY---------------------FG-LMVVGPNGG-----Q--AQQLASS--A-------  136 (343)
Q Consensus        95 ~~~p~gi~~~~~~~~l~v~~~~---------------------~g-i~~~d~~~~-----~--~~~~~~~--~-------  136 (343)
                      ..+|.++.+++.++.+|++-+.                     .| |+++..+.+     .  +..+...  .       
T Consensus       383 mdRpEdi~v~p~~g~vY~alTnn~~rg~~~~~~~~~Npr~~n~~G~I~r~~e~~~d~~a~~f~W~i~l~~G~p~~~~~~~  462 (592)
T 4a9v_A          383 MDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAGTP  462 (592)
T ss_dssp             EECEEEEEECTTTCCEEEEECCBTTTTSTTSCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTTSG
T ss_pred             ccCccceeEcCCCCEEEEEEeCCCCCCCcCccccCCCCccCCCCCeEEEEeeCCCCcccceeeEEEEEEccCCccccccc
Confidence            4479999999878899998432                     14 888875432     1  2322110  0       


Q ss_pred             --------CCCCccCcceeEEeCCCCeEEE-EeCCcccccccceeeeeecCCCceEEEEeCCCCceEEeecC--CCCcce
Q 019290          137 --------GGIPFRFTNDLDIDPNTGIVYF-TDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNG--LSFPNG  205 (343)
Q Consensus       137 --------~~~~~~~~~~i~~d~~dg~l~v-~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~--~~~~~~  205 (343)
                              ....++.|++|++|+ +|.||| +|...  +..    ...++.....||++++.+++++++...  ...++|
T Consensus       463 ~~g~~~~~~~~~fnsPDnL~fd~-~G~LWf~TD~~~--~~~----g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnG  535 (592)
T 4a9v_A          463 KGGSSNITPQNMFNSPDGLGFDK-AGRLWILTDGDS--SNA----GDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTG  535 (592)
T ss_dssp             GGCCTTCCTTTCCCCEEEEEECT-TCCEEEEECCCC--CCS----GGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEE
T ss_pred             ccCccCccccCccCCCCceEECC-CCCEEEEeCCCc--Ccc----ccccccCCceEEEEeCCCCeEEEEEeCCCCccccC
Confidence                    112478899999999 599999 55431  100    000122345799999988998887643  356899


Q ss_pred             eEEecCCCEEEEEEcCCC
Q 019290          206 VALSNNNSFLLLAESATL  223 (343)
Q Consensus       206 i~~~~d~~~lyv~~~~~~  223 (343)
                      ++++||+++|||+-+..+
T Consensus       536 iafSPD~ktLfV~vQHPG  553 (592)
T 4a9v_A          536 ISFSPDQKTLFVGIQHPG  553 (592)
T ss_dssp             EEECTTSSEEEEEEESTT
T ss_pred             CEECCCCCEEEEEEeCCC
Confidence            999999999999865443

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=98.09  E-value=0.00044  Score=61.21  Aligned_cols=201  Identities=11%  Similarity=0.015  Sum_probs=108.1

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEE--eCCCCe-EEE
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKF--NPVTCD-LYI  112 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~--~~~~~~-l~v  112 (343)
                      ...++++.++++.++++..++.|..||..+++...+..                    ....+..+.+  ++ ++. ++.
T Consensus        88 ~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~--------------------~~~~v~~~~~~~~~-~~~~l~~  146 (368)
T 3mmy_A           88 PVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQ--------------------HDAPVKTIHWIKAP-NYSCVMT  146 (368)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE--------------------CSSCEEEEEEEECS-SCEEEEE
T ss_pred             CEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeecc--------------------ccCceEEEEEEeCC-CCCEEEE
Confidence            46789999999988888899999999998876544321                    1234567888  66 555 555


Q ss_pred             EeCCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCC-------CCeEEEEeCCccc---cc---------------
Q 019290          113 ADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPN-------TGIVYFTDSSIYF---QR---------------  167 (343)
Q Consensus       113 ~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~-------dg~l~v~~~~~~~---~~---------------  167 (343)
                      +.....|..+|.++++.........     .+..+.....       ++.+.+-+.....   ..               
T Consensus       147 ~~~dg~i~vwd~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (368)
T 3mmy_A          147 GSWDKTLKFWDTRSSNPMMVLQLPE-----RCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIF  221 (368)
T ss_dssp             EETTSEEEEECSSCSSCSEEEECSS-----CEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEE
T ss_pred             ccCCCcEEEEECCCCcEEEEEecCC-----CceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEc
Confidence            5433448999988765322211110     1111122210       1222221111000   00               


Q ss_pred             --cc-ceeeeeecCCCceEEEEeCCCCce----EEeecCCC------------CcceeEEecCCCEEEEEEcCCCeEEEE
Q 019290          168 --RQ-YFMSIATGDRSGRLLKYDPLKKNV----TVMYNGLS------------FPNGVALSNNNSFLLLAESATLKILRF  228 (343)
Q Consensus       168 --~~-~~~~~~~~~~~~~v~~~d~~~~~~----~~~~~~~~------------~~~~i~~~~d~~~lyv~~~~~~~i~~~  228 (343)
                        .. ....+..+...+.|..++......    ..+.....            ....++++++++.|+.+ ..++.|..|
T Consensus       222 ~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~-~~dg~i~iw  300 (368)
T 3mmy_A          222 KDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATV-GSDGRFSFW  300 (368)
T ss_dssp             ECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEE-ETTSCEEEE
T ss_pred             ccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEE-ccCCeEEEE
Confidence              00 000022333355677777654421    12221111            46789999999876655 467899999


Q ss_pred             EccCccccccceeeecCCCCCCceeeCCCCCEEEEecc
Q 019290          229 WLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNS  266 (343)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~~  266 (343)
                      ++.....   ...+.........++++++|++.++...
T Consensus       301 d~~~~~~---~~~~~~~~~~v~~~~~s~~g~~l~~~s~  335 (368)
T 3mmy_A          301 DKDARTK---LKTSEQLDQPISACCFNHNGNIFAYASS  335 (368)
T ss_dssp             ETTTTEE---EEECCCCSSCEEEEEECTTSSCEEEEEC
T ss_pred             ECCCCcE---EEEecCCCCCceEEEECCCCCeEEEEec
Confidence            9875211   1222112223455788999976666543

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=98.09  E-value=0.00021  Score=71.00  Aligned_cols=194  Identities=14%  Similarity=0.122  Sum_probs=111.9

Q ss_pred             CCceEEEcCC--CCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCC--CCeEE
Q 019290           36 GPESLAFDCN--GEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPV--TCDLY  111 (343)
Q Consensus        36 ~p~~l~~d~~--g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~--~~~l~  111 (343)
                      ...++++.++  |+.+.++..+|.|..||..++........                 ......+..++++++  +..++
T Consensus        55 ~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~-----------------~~h~~~V~~v~~sp~~~~~~l~  117 (753)
T 3jro_A           55 PVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVH-----------------AVHSASVNSVQWAPHEYGPLLL  117 (753)
T ss_dssp             CEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEE-----------------CCCSSCEEEEEECCGGGCSEEE
T ss_pred             ceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccc-----------------cCCCCCeEEEEECCCCCCCEEE
Confidence            4668899877  88888889999999999887653333211                 122335678999984  34566


Q ss_pred             EEeCCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCC------------CCeEEEEeCCcccccccceeeeeecCC
Q 019290          112 IADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPN------------TGIVYFTDSSIYFQRRQYFMSIATGDR  179 (343)
Q Consensus       112 v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~------------dg~l~v~~~~~~~~~~~~~~~~~~~~~  179 (343)
                      ++.....|..+|.+++........ .. ....+..+++.+.            ++.+.++...                 
T Consensus       118 sgs~dg~I~vwdl~~~~~~~~~~~-~~-~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~-----------------  178 (753)
T 3jro_A          118 VASSDGKVSVVEFKENGTTSPIII-DA-HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA-----------------  178 (753)
T ss_dssp             EEETTSEEEEEECCSSSCCCCEEE-EC-CSSCEEEEEECCCC---------CGGGCCEEEEET-----------------
T ss_pred             EEeCCCcEEEEEeecCCCcceeEe-ec-CCCceEEEEecCcccccccccccCCCCCEEEEEEC-----------------
Confidence            664444488999876632111111 01 1134677777772            1444443222                 


Q ss_pred             CceEEEEeCCCCc----e-EEeecCCCCcceeEEecC---CCEEEEEEcCCCeEEEEEccCccccccceeee--cCCCCC
Q 019290          180 SGRLLKYDPLKKN----V-TVMYNGLSFPNGVALSNN---NSFLLLAESATLKILRFWLQGERTTYTPQLFA--EMPRFP  249 (343)
Q Consensus       180 ~~~v~~~d~~~~~----~-~~~~~~~~~~~~i~~~~d---~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~p  249 (343)
                      .+.|..||..++.    . ..+.........++++|+   +. +.++...++.|..|++.............  ...+..
T Consensus       179 dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~-~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v  257 (753)
T 3jro_A          179 DNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS-YLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVL  257 (753)
T ss_dssp             TSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSE-EEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCC
T ss_pred             CCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCC-EEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCce
Confidence            4556667654432    1 122233455788999998   55 44555668899999987532100111111  122335


Q ss_pred             CceeeCCCCCEEEEecc
Q 019290          250 DNIKSDSKGEFWIAMNS  266 (343)
Q Consensus       250 ~~i~~d~~G~lwi~~~~  266 (343)
                      ..++++++|++.++...
T Consensus       258 ~~l~~spdg~~l~s~s~  274 (753)
T 3jro_A          258 WRASWSLSGNVLALSGG  274 (753)
T ss_dssp             CCEEECTTTCCEEEECS
T ss_pred             EEEEEcCCCCEEEEEcC
Confidence            56788999876665544

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=98.09  E-value=0.00016  Score=66.78  Aligned_cols=143  Identities=10%  Similarity=0.109  Sum_probs=85.5

Q ss_pred             CeeeEEEeCCCCe-EEEEeCCCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeee
Q 019290           97 RPLGIKFNPVTCD-LYIADAYFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSI  174 (343)
Q Consensus        97 ~p~gi~~~~~~~~-l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~  174 (343)
                      .+..++++|.+++ |..+. .+| |..+|.++++........ + ....++++++.|.++.++++...            
T Consensus       121 ~V~~l~~~P~~~~~lasGs-~dg~i~lWd~~~~~~~~~~~~~-g-H~~~V~~l~f~p~~~~~l~s~s~------------  185 (435)
T 4e54_B          121 RATSLAWHPTHPSTVAVGS-KGGDIMLWNFGIKDKPTFIKGI-G-AGGSITGLKFNPLNTNQFYASSM------------  185 (435)
T ss_dssp             CEEEEEECSSCTTCEEEEE-TTSCEEEECSSCCSCCEEECCC-S-SSCCCCEEEECSSCTTEEEEECS------------
T ss_pred             CEEEEEEeCCCCCEEEEEe-CCCEEEEEECCCCCceeEEEcc-C-CCCCEEEEEEeCCCCCEEEEEeC------------
Confidence            4678999974454 55554 445 899998776543332211 1 12458899999744666665543            


Q ss_pred             eecCCCceEEEEeCCCCceEEeecCC---CCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCc
Q 019290          175 ATGDRSGRLLKYDPLKKNVTVMYNGL---SFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDN  251 (343)
Q Consensus       175 ~~~~~~~~v~~~d~~~~~~~~~~~~~---~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~  251 (343)
                           .+.|..+|.+++....+...-   .....+++++++..++ +....+.|..|++.+..    ...+.........
T Consensus       186 -----D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~g~~dg~i~~wd~~~~~----~~~~~~h~~~v~~  255 (435)
T 4e54_B          186 -----EGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVV-TGDNVGNVILLNMDGKE----LWNLRMHKKKVTH  255 (435)
T ss_dssp             -----SSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEE-EECSSSBEEEEESSSCB----CCCSBCCSSCEEE
T ss_pred             -----CCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEE-EEeCCCcEeeeccCcce----eEEEecccceEEe
Confidence                 456888888766655443321   2346788999988554 55668899999986522    2222111122344


Q ss_pred             eeeCCCCC-EEEEe
Q 019290          252 IKSDSKGE-FWIAM  264 (343)
Q Consensus       252 i~~d~~G~-lwi~~  264 (343)
                      +++.+++. +.++.
T Consensus       256 v~~~p~~~~~~~s~  269 (435)
T 4e54_B          256 VALNPCCDWFLATA  269 (435)
T ss_dssp             EEECTTCSSEEEEE
T ss_pred             eeecCCCceEEEEe
Confidence            67777775 44443

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=98.07  E-value=0.0018  Score=59.33  Aligned_cols=167  Identities=13%  Similarity=0.083  Sum_probs=95.6

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcC---CCCeEEeeecCCCccccccCCCCCcccCC--CcCCeeeEE--EeCCCC
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAA---NSGWTEFATTAPHRAREICDGSTNTTLEP--LCGRPLGIK--FNPVTC  108 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~p~gi~--~~~~~~  108 (343)
                      ...++++.++++.+.++..++.|..||..   +++............  .       ...+  .......+.  ..+++.
T Consensus       113 ~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~--~-------~~~~~~~~~~~~~~~~~~~~~~~  183 (437)
T 3gre_A          113 TVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRK--I-------NLKNFGKNEYAVRMRAFVNEEKS  183 (437)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEE--E-------EGGGGSSCCCEEEEEEEECSSCE
T ss_pred             CEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEE--E-------EccCcccccCceEEEEEEcCCCC
Confidence            57799999999988888999999999873   333222211000000  0       0000  112233444  335233


Q ss_pred             eEEEEeCCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeC
Q 019290          109 DLYIADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDP  188 (343)
Q Consensus       109 ~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~  188 (343)
                      .++.+.....|..+|.++++.........  ....+..+++++ ++.+.++...                 .+.|..||.
T Consensus       184 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--h~~~v~~~~~s~-~~~~l~s~~~-----------------dg~i~iwd~  243 (437)
T 3gre_A          184 LLVALTNLSRVIIFDIRTLERLQIIENSP--RHGAVSSICIDE-ECCVLILGTT-----------------RGIIDIWDI  243 (437)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEEECCG--GGCCEEEEEECT-TSCEEEEEET-----------------TSCEEEEET
T ss_pred             EEEEEeCCCeEEEEeCCCCeeeEEEccCC--CCCceEEEEECC-CCCEEEEEcC-----------------CCeEEEEEc
Confidence            45555443459999998876543322210  124578999999 4776664432                 456888888


Q ss_pred             CCCceEEee--cCCCCcceeEEec----CCCEEEEEEcCCCeEEEEEccC
Q 019290          189 LKKNVTVMY--NGLSFPNGVALSN----NNSFLLLAESATLKILRFWLQG  232 (343)
Q Consensus       189 ~~~~~~~~~--~~~~~~~~i~~~~----d~~~lyv~~~~~~~i~~~~~~~  232 (343)
                      .+++.....  ........+++.+    ++. +.++...++.|..|++..
T Consensus       244 ~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~-~l~s~~~dg~i~iwd~~~  292 (437)
T 3gre_A          244 RFNVLIRSWSFGDHAPITHVEVCQFYGKNSV-IVVGGSSKTFLTIWNFVK  292 (437)
T ss_dssp             TTTEEEEEEBCTTCEEEEEEEECTTTCTTEE-EEEEESTTEEEEEEETTT
T ss_pred             CCccEEEEEecCCCCceEEEEeccccCCCcc-EEEEEcCCCcEEEEEcCC
Confidence            766653322  2223345665543    443 555666788899999864

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=98.06  E-value=0.0023  Score=56.54  Aligned_cols=160  Identities=11%  Similarity=0.083  Sum_probs=91.2

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCC-----eEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeE
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSG-----WTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDL  110 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l  110 (343)
                      ...++++.++|+.+.++..++.|..|+..+..     .....                 ........+..+++++++..|
T Consensus        60 ~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~-----------------~~~~h~~~V~~v~~sp~g~~l  122 (330)
T 2hes_X           60 AIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLA-----------------IIEGHENEVKGVAWSNDGYYL  122 (330)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEE-----------------EEC----CEEEEEECTTSCEE
T ss_pred             CEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEE-----------------EEcCCCCcEEEEEECCCCCEE
Confidence            46789999999988888899999999875321     11110                 001122346789999843344


Q ss_pred             EEEeCCCeEEEEeCCC-Ce-EEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeC
Q 019290          111 YIADAYFGLMVVGPNG-GQ-AQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDP  188 (343)
Q Consensus       111 ~v~~~~~gi~~~d~~~-~~-~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~  188 (343)
                      ..+.....|..+|.+. ++ .+.+. ...+ ....+..+++.| ++.+.++...                 .+.|..+|.
T Consensus       123 as~s~D~~v~iwd~~~~~~~~~~~~-~~~~-h~~~v~~v~~~p-~~~~l~s~s~-----------------D~~i~iW~~  182 (330)
T 2hes_X          123 ATCSRDKSVWIWETDESGEEYECIS-VLQE-HSQDVKHVIWHP-SEALLASSSY-----------------DDTVRIWKD  182 (330)
T ss_dssp             EEEETTSCEEEEECCTTCCCCEEEE-EECC-CSSCEEEEEECS-SSSEEEEEET-----------------TSCEEEEEE
T ss_pred             EEEeCCCEEEEEeccCCCCCeEEEE-Eecc-CCCceEEEEECC-CCCEEEEEcC-----------------CCeEEEEEC
Confidence            4443333488888842 21 12111 1111 113578899999 5777665433                 345655655


Q ss_pred             CCCce---EEeecCCCCcceeEEecCCC-EEEEEEcCCCeEEEEEccC
Q 019290          189 LKKNV---TVMYNGLSFPNGVALSNNNS-FLLLAESATLKILRFWLQG  232 (343)
Q Consensus       189 ~~~~~---~~~~~~~~~~~~i~~~~d~~-~lyv~~~~~~~i~~~~~~~  232 (343)
                      .++..   ..+.........+++++++. ...++...++.|..|++.+
T Consensus       183 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~  230 (330)
T 2hes_X          183 YDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMG  230 (330)
T ss_dssp             ETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEE
T ss_pred             CCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecC
Confidence            43422   22333334567888988732 2445556788999998764

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=98.05  E-value=0.00078  Score=58.55  Aligned_cols=194  Identities=12%  Similarity=0.102  Sum_probs=104.6

Q ss_pred             CceEEEcC--CCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCC--CCeEEE
Q 019290           37 PESLAFDC--NGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPV--TCDLYI  112 (343)
Q Consensus        37 p~~l~~d~--~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~--~~~l~v  112 (343)
                      ..++++.+  +|+.+.++..++.|..||..++....+..                 .......+..+++.++  +..|..
T Consensus        56 V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~-----------------~~~h~~~v~~v~~~p~~~g~~l~s  118 (297)
T 2pm7_B           56 VWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAV-----------------HAVHSASVNSVQWAPHEYGPMLLV  118 (297)
T ss_dssp             EEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEE-----------------ECCCSSCEEEEEECCGGGCSEEEE
T ss_pred             eEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEE-----------------eecCCCceeEEEeCcCCCCcEEEE
Confidence            45788865  48878888899999999987654221110                 0011234678888873  234555


Q ss_pred             EeCCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCC------------CCeEEEEeCCcccccccceeeeeecCCC
Q 019290          113 ADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPN------------TGIVYFTDSSIYFQRRQYFMSIATGDRS  180 (343)
Q Consensus       113 ~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~------------dg~l~v~~~~~~~~~~~~~~~~~~~~~~  180 (343)
                      +.....|..+|.+++..... ....+ ....++.+++.+.            +++++++...                 .
T Consensus       119 ~s~d~~v~~wd~~~~~~~~~-~~~~~-h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~-----------------D  179 (297)
T 2pm7_B          119 ASSDGKVSVVEFKENGTTSP-IIIDA-HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA-----------------D  179 (297)
T ss_dssp             EETTSEEEEEEBCSSSCBCC-EEEEC-CSSCEEEEEECCCC------------CCEEEEEET-----------------T
T ss_pred             EECCCcEEEEEecCCCceee-eeeec-ccCccceEeecCCcccccccCCCCCCcceEEEEcC-----------------C
Confidence            54444488888875421100 00001 1134667777762            0233433221                 3


Q ss_pred             ceEEEEeCCCCc----e-EEeecCCCCcceeEEecCC--CEEEEEEcCCCeEEEEEccCccccccceeee--cCCCCCCc
Q 019290          181 GRLLKYDPLKKN----V-TVMYNGLSFPNGVALSNNN--SFLLLAESATLKILRFWLQGERTTYTPQLFA--EMPRFPDN  251 (343)
Q Consensus       181 ~~v~~~d~~~~~----~-~~~~~~~~~~~~i~~~~d~--~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~p~~  251 (343)
                      +.|..+|..+++    . ..+.........++++|++  ..+.++.+.++.|..|++...........+.  ........
T Consensus       180 ~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~  259 (297)
T 2pm7_B          180 NLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWR  259 (297)
T ss_dssp             SCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEE
T ss_pred             CcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEE
Confidence            445555544333    1 1233334457889999985  4566677778999999986521100111111  11111234


Q ss_pred             eeeCCCCCEEEEecc
Q 019290          252 IKSDSKGEFWIAMNS  266 (343)
Q Consensus       252 i~~d~~G~lwi~~~~  266 (343)
                      ++++++|++.++...
T Consensus       260 ~~~s~~g~~las~~~  274 (297)
T 2pm7_B          260 ASWSLSGNVLALSGG  274 (297)
T ss_dssp             EEECSSSCCEEEEET
T ss_pred             EEECCCCCEEEEEcC
Confidence            567888977666544

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=98.00  E-value=0.0011  Score=60.45  Aligned_cols=199  Identities=14%  Similarity=0.127  Sum_probs=112.3

Q ss_pred             CCceEEEcC--CCCeeEEEecCC----EEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCC--C
Q 019290           36 GPESLAFDC--NGEGPYVGVSDG----RILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPV--T  107 (343)
Q Consensus        36 ~p~~l~~d~--~g~~l~~~~~~g----~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~--~  107 (343)
                      ...+|++|+  .+. +|++...+    +|++.+..+..|+.+........ ..  +   ............+++++.  .
T Consensus        56 ~v~~i~~dp~~~~~-l~~g~~~g~~g~gl~~s~D~G~tW~~~~~~~~~~~-~~--~---~~~~~~~~~i~~l~~~~~~~~  128 (394)
T 3b7f_A           56 TIHHIVQDPREPER-MLMAARTGHLGPTVFRSDDGGGNWTEATRPPAFNK-AP--E---GETGRVVDHVFWLTPGHASEP  128 (394)
T ss_dssp             EEEEEEECSSSTTC-EEEEEEC--CCEEEEEESSTTSCCEECSBCCCCCC-CC---------CCCCCEEEEEEECCTTST
T ss_pred             ceEEEEECCCCCCe-EEEEecCCCCCccEEEeCCCCCCceECCccccCCC-cc--c---ccccccccceeEEEeCCCCCC
Confidence            578999998  455 88887777    89998877778887642110000 00  0   000001123456788752  5


Q ss_pred             CeEEEEeCCCeEEEEeCCCCeEEEccccc--C------------CCCccCcceeEEeCC-CCeEEEEeCCccccccccee
Q 019290          108 CDLYIADAYFGLMVVGPNGGQAQQLASSA--G------------GIPFRFTNDLDIDPN-TGIVYFTDSSIYFQRRQYFM  172 (343)
Q Consensus       108 ~~l~v~~~~~gi~~~d~~~~~~~~~~~~~--~------------~~~~~~~~~i~~d~~-dg~l~v~~~~~~~~~~~~~~  172 (343)
                      +.||++....+|++.+-.+..++.+....  .            ......+..|++|+. .+.+|++..           
T Consensus       129 ~~l~~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~-----------  197 (394)
T 3b7f_A          129 GTWYAGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMS-----------  197 (394)
T ss_dssp             TCEEEEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEE-----------
T ss_pred             CEEEEEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEEC-----------
Confidence            78999866678999876656666653211  0            011234568889862 368999653           


Q ss_pred             eeeecCCCceEEEEeCCCCceEEeecCC-------------CCcceeEEecC-CCEEEEEEcCCCeEEEEEccCcccccc
Q 019290          173 SIATGDRSGRLLKYDPLKKNVTVMYNGL-------------SFPNGVALSNN-NSFLLLAESATLKILRFWLQGERTTYT  238 (343)
Q Consensus       173 ~~~~~~~~~~v~~~d~~~~~~~~~~~~~-------------~~~~~i~~~~d-~~~lyv~~~~~~~i~~~~~~~~~~~~~  238 (343)
                             .++|++.+..+...+.+....             .....++++++ .+.+|+..  .+.|++.+-.+    ..
T Consensus       198 -------~ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~--~~gl~~s~D~G----~t  264 (394)
T 3b7f_A          198 -------SGGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQN--HCGIYRMDRRE----GV  264 (394)
T ss_dssp             -------TBEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEE--TTEEEEEETTT----TE
T ss_pred             -------CCCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEc--CCeEEEeCCCC----Cc
Confidence                   246888765545555443211             12356777764 36788865  46788876444    22


Q ss_pred             ceeeec-CCC----CCCceeeCC--CCCEEEEec
Q 019290          239 PQLFAE-MPR----FPDNIKSDS--KGEFWIAMN  265 (343)
Q Consensus       239 ~~~~~~-~~~----~p~~i~~d~--~G~lwi~~~  265 (343)
                      .+.+.. ++.    ....+++|+  .+.+|+++.
T Consensus       265 W~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t~  298 (394)
T 3b7f_A          265 WKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFPM  298 (394)
T ss_dssp             EECGGGGSCTTTCSCEEEEEECSSCTTCEEEEEC
T ss_pred             ceECCCCCCCCCccceEEEEECCCCCCEEEEEec
Confidence            222211 111    111356664  578999864

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=97.99  E-value=0.0041  Score=60.91  Aligned_cols=39  Identities=10%  Similarity=0.003  Sum_probs=25.4

Q ss_pred             CeEEEECC-CCCEEEEeeCCCCCccCCceeEEEeCCEEEEec
Q 019290          292 PVGVKFDV-NGNVVDVLDGNEGNTLNSVSEVQEYGEYLYTGS  332 (343)
Q Consensus       292 ~~v~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~  332 (343)
                      +.++.+|. +|+++..+..+.+.....++.  ..+|+.|++.
T Consensus       498 g~l~a~D~~tG~~lw~~~~~~~~~~~p~~y--~~~G~~~v~~  537 (677)
T 1kb0_A          498 GRLVAYHAATGEKLWEAPTGTGVVAAPSTY--MVDGRQYVSV  537 (677)
T ss_dssp             SEEEEEETTTCCEEEEEECSSCCCSCCEEE--EETTEEEEEE
T ss_pred             CcEEEEECCCCceeeeeeCCCCcccCCEEE--EeCCEEEEEE
Confidence            58889996 699988887765532222222  3477877653

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.98  E-value=0.0096  Score=54.51  Aligned_cols=221  Identities=14%  Similarity=0.154  Sum_probs=121.1

Q ss_pred             EEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCCCeE
Q 019290           40 LAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFGL  119 (343)
Q Consensus        40 l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~~gi  119 (343)
                      .++..+|+.+.++..++.|..||..+++......                   .....+..+.++  ++.|..+.....|
T Consensus       137 ~~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~-------------------~h~~~v~~l~~~--~~~l~sg~~dg~i  195 (435)
T 1p22_A          137 YCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILT-------------------GHTGSVLCLQYD--ERVIITGSSDSTV  195 (435)
T ss_dssp             EEEECCSSEEEEEESSSCEEEEESSSCCEEEEEC-------------------CCSSCEEEEECC--SSEEEEEETTSCE
T ss_pred             EEEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEc-------------------CCCCcEEEEEEC--CCEEEEEcCCCeE
Confidence            3555688878888999999999988765443321                   112234556663  5667777544449


Q ss_pred             EEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceE----E
Q 019290          120 MVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVT----V  195 (343)
Q Consensus       120 ~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~----~  195 (343)
                      ..+|.++++........    ...+..+++++  +.++.+..                  .+.|..+|..++...    .
T Consensus       196 ~vwd~~~~~~~~~~~~h----~~~v~~l~~~~--~~l~s~s~------------------dg~i~vwd~~~~~~~~~~~~  251 (435)
T 1p22_A          196 RVWDVNTGEMLNTLIHH----CEAVLHLRFNN--GMMVTCSK------------------DRSIAVWDMASPTDITLRRV  251 (435)
T ss_dssp             EEEESSSCCEEEEECCC----CSCEEEEECCT--TEEEEEET------------------TSCEEEEECSSSSCCEEEEE
T ss_pred             EEEECCCCcEEEEEcCC----CCcEEEEEEcC--CEEEEeeC------------------CCcEEEEeCCCCCCceeeeE
Confidence            99999887654332221    13456666654  45555332                  456888887655432    2


Q ss_pred             eecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEeccCCCcccccc
Q 019290          196 MYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNSARGKIESNK  275 (343)
Q Consensus       196 ~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~~~~~~~~~~~  275 (343)
                      +.........+++  +++.++.+ ..++.|..|++.....   ...+.........+..  ++++.++...         
T Consensus       252 ~~~~~~~v~~~~~--~~~~l~s~-~~dg~i~vwd~~~~~~---~~~~~~~~~~v~~~~~--~~~~l~~g~~---------  314 (435)
T 1p22_A          252 LVGHRAAVNVVDF--DDKYIVSA-SGDRTIKVWNTSTCEF---VRTLNGHKRGIACLQY--RDRLVVSGSS---------  314 (435)
T ss_dssp             ECCCSSCEEEEEE--ETTEEEEE-ETTSEEEEEETTTCCE---EEEEECCSSCEEEEEE--ETTEEEEEET---------
T ss_pred             ecCCCCcEEEEEe--CCCEEEEE-eCCCeEEEEECCcCcE---EEEEcCCCCcEEEEEe--CCCEEEEEeC---------
Confidence            2222233455555  56655544 5688999999865221   1122111111122333  4555555444         


Q ss_pred             ccccccccCCCcccCCCeEEEECC-CCCEEEEeeCCCCCccCCceeEEEeCCEEEEecCCCCeEEEEc
Q 019290          276 KTAFCEETAKPWFLRDPVGVKFDV-NGNVVDVLDGNEGNTLNSVSEVQEYGEYLYTGSSVQPYVVVIK  342 (343)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~~~~i~~~~  342 (343)
                                     .+.|..+|. .++.+..+....    ..+..+..+++.|..+ .....|.+++
T Consensus       315 ---------------dg~i~iwd~~~~~~~~~~~~h~----~~v~~~~~~~~~l~sg-~~dg~i~vwd  362 (435)
T 1p22_A          315 ---------------DNTIRLWDIECGACLRVLEGHE----ELVRCIRFDNKRIVSG-AYDGKIKVWD  362 (435)
T ss_dssp             ---------------TSCEEEEETTTCCEEEEECCCS----SCEEEEECCSSEEEEE-ETTSCEEEEE
T ss_pred             ---------------CCeEEEEECCCCCEEEEEeCCc----CcEEEEEecCCEEEEE-eCCCcEEEEE
Confidence                           346777886 466666664322    2344444444444444 4445566554

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=97.97  E-value=0.0015  Score=57.37  Aligned_cols=194  Identities=8%  Similarity=0.067  Sum_probs=103.2

Q ss_pred             CCceEEEcC--CCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCC-CeEEE
Q 019290           36 GPESLAFDC--NGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVT-CDLYI  112 (343)
Q Consensus        36 ~p~~l~~d~--~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~-~~l~v  112 (343)
                      ...++++.+  +|+.+.++..++.|..||..++.+......                 ......+..++++++. +.+++
T Consensus        59 ~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~-----------------~~h~~~V~~v~~~p~~~g~~la  121 (316)
T 3bg1_A           59 PVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEH-----------------AGHDSSVNSVCWAPHDYGLILA  121 (316)
T ss_dssp             CEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEE-----------------CCCSSCCCEEEECCTTTCSCEE
T ss_pred             cEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEc-----------------cCCCCceEEEEECCCCCCcEEE
Confidence            356788865  478788888999999999877543222110                 0112345788898742 44444


Q ss_pred             EeCCCe-EEEEeCCCCe-EEEcccccCCCCccCcceeEEeCCCC-----------------eEEEEeCCcccccccceee
Q 019290          113 ADAYFG-LMVVGPNGGQ-AQQLASSAGGIPFRFTNDLDIDPNTG-----------------IVYFTDSSIYFQRRQYFMS  173 (343)
Q Consensus       113 ~~~~~g-i~~~d~~~~~-~~~~~~~~~~~~~~~~~~i~~d~~dg-----------------~l~v~~~~~~~~~~~~~~~  173 (343)
                      +...++ |..++.+++. ..... .... ....++.+++.+ ++                 .++++.             
T Consensus       122 sgs~D~~i~lwd~~~~~~~~~~~-~~~~-h~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~sg-------------  185 (316)
T 3bg1_A          122 CGSSDGAISLLTYTGEGQWEVKK-INNA-HTIGCNAVSWAP-AVVPGSLIDHPSGQKPNYIKRFASG-------------  185 (316)
T ss_dssp             EECSSSCEEEEEECSSSCEEECC-BTTS-SSSCBCCCEECC-CCCC------CCSCCCCCCCBEECC-------------
T ss_pred             EEcCCCCEEEEecCCCCCcceee-eecc-ccCCcceEEEcc-ccCCccccccccccCccccceEEEe-------------
Confidence            334444 8888876542 22211 1111 113356666666 22                 222221             


Q ss_pred             eeecCCCceEEEEeCCCC-ceE---EeecCCCCcceeEEecCC---CEEEEEEcCCCeEEEEEccCcccc-ccceeeecC
Q 019290          174 IATGDRSGRLLKYDPLKK-NVT---VMYNGLSFPNGVALSNNN---SFLLLAESATLKILRFWLQGERTT-YTPQLFAEM  245 (343)
Q Consensus       174 ~~~~~~~~~v~~~d~~~~-~~~---~~~~~~~~~~~i~~~~d~---~~lyv~~~~~~~i~~~~~~~~~~~-~~~~~~~~~  245 (343)
                          ...+.|..+|..++ ...   .+.........++++|++   ..++++...++.|..|++...... ...+.+...
T Consensus       186 ----s~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~  261 (316)
T 3bg1_A          186 ----GCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKF  261 (316)
T ss_dssp             ----BTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEEC
T ss_pred             ----cCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcC
Confidence                11344555554422 221   222233446788999876   235566667899999997642110 011122222


Q ss_pred             CCCCCceeeCCCCCEEEEecc
Q 019290          246 PRFPDNIKSDSKGEFWIAMNS  266 (343)
Q Consensus       246 ~~~p~~i~~d~~G~lwi~~~~  266 (343)
                      ......+++.++|++.++...
T Consensus       262 ~~~v~~v~~sp~g~~las~~~  282 (316)
T 3bg1_A          262 NDVVWHVSWSITANILAVSGG  282 (316)
T ss_dssp             SSCEEEEEECTTTCCEEEEES
T ss_pred             CCcEEEEEEcCCCCEEEEEcC
Confidence            222345678898877666544

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.90  E-value=0.014  Score=53.52  Aligned_cols=144  Identities=9%  Similarity=0.027  Sum_probs=90.1

Q ss_pred             EEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCCCeEE
Q 019290           41 AFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFGLM  120 (343)
Q Consensus        41 ~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~~gi~  120 (343)
                      ++..+|+.++++..++.|..||..+++.....                   ......+..+.++  ++.++.+.....|.
T Consensus       124 ~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~-------------------~~h~~~v~~~~~~--~~~l~s~~~dg~i~  182 (445)
T 2ovr_B          124 CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTL-------------------VGHTGGVWSSQMR--DNIIISGSTDRTLK  182 (445)
T ss_dssp             EEEEETTEEEEEETTSCEEEEETTTCCEEEEC-------------------CCCSSCEEEEEEE--TTEEEEEETTSCEE
T ss_pred             EEEEcCCEEEEEECCCcEEEEECCCCcEEEEE-------------------cCCCCCEEEEEec--CCEEEEEeCCCeEE
Confidence            45556887888999999999998876543221                   1122345677777  45677775444599


Q ss_pred             EEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEE-eecC
Q 019290          121 VVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTV-MYNG  199 (343)
Q Consensus       121 ~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~-~~~~  199 (343)
                      .+|.++++........    ...+..+++++  +.++.+..                  .+.|..+|..+++... +...
T Consensus       183 vwd~~~~~~~~~~~~h----~~~v~~~~~~~--~~l~s~s~------------------dg~i~~wd~~~~~~~~~~~~~  238 (445)
T 2ovr_B          183 VWNAETGECIHTLYGH----TSTVRCMHLHE--KRVVSGSR------------------DATLRVWDIETGQCLHVLMGH  238 (445)
T ss_dssp             EEETTTTEEEEEECCC----SSCEEEEEEET--TEEEEEET------------------TSEEEEEESSSCCEEEEEECC
T ss_pred             EEECCcCcEEEEECCC----CCcEEEEEecC--CEEEEEeC------------------CCEEEEEECCCCcEEEEEcCC
Confidence            9999888654332221    13466777765  45555332                  4678888887666543 3333


Q ss_pred             CCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290          200 LSFPNGVALSNNNSFLLLAESATLKILRFWLQG  232 (343)
Q Consensus       200 ~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~  232 (343)
                      ......+++  +++.++. ...++.|..|++..
T Consensus       239 ~~~v~~~~~--~~~~l~~-~~~dg~i~iwd~~~  268 (445)
T 2ovr_B          239 VAAVRCVQY--DGRRVVS-GAYDFMVKVWDPET  268 (445)
T ss_dssp             SSCEEEEEE--CSSCEEE-EETTSCEEEEEGGG
T ss_pred             cccEEEEEE--CCCEEEE-EcCCCEEEEEECCC
Confidence            334455555  5665554 45678999999764

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.88  E-value=0.012  Score=56.57  Aligned_cols=40  Identities=10%  Similarity=-0.062  Sum_probs=26.1

Q ss_pred             CeEEEECC-CCCEEEEeeCCCCCccCCceeEEEeCCEEEEecC
Q 019290          292 PVGVKFDV-NGNVVDVLDGNEGNTLNSVSEVQEYGEYLYTGSS  333 (343)
Q Consensus       292 ~~v~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~  333 (343)
                      +.++.+|. +|+++-.+..+.+.....+..  +.+|++||+..
T Consensus       494 g~l~A~D~~tG~~lW~~~l~~g~~~~P~~y--~~~G~qyv~~~  534 (599)
T 1w6s_A          494 GYLKARDSDTGDLLWKFKIPSGAIGYPMTY--THKGTQYVAIY  534 (599)
T ss_dssp             SEEEEEETTTCCEEEEEECSSCCCSCCEEE--EETTEEEEEEE
T ss_pred             CeEEEEECCCCCEEEEeeCCCCcEeccEEE--EeCCEEEEEEE
Confidence            57889997 689887777766533323222  34888887643

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=97.84  E-value=0.0049  Score=58.53  Aligned_cols=185  Identities=8%  Similarity=0.004  Sum_probs=110.5

Q ss_pred             CCCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEe
Q 019290           35 VGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIAD  114 (343)
Q Consensus        35 ~~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~  114 (343)
                      ....+++++|+|..+-++..+|.+..||.++ ....+. ..               ..-.....+.++++++++.|+++.
T Consensus        86 ~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~-~l~~l~-~~---------------~~~~~~sv~svafSPDG~~LAsgs  148 (588)
T 2j04_A           86 CYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK-MLTNLD-SK---------------GNLSSRTYHCFEWNPIESSIVVGN  148 (588)
T ss_dssp             CCEEEEEECSSSSCEEEEETTSCEEEEETTE-EEEECC-CS---------------SCSTTTCEEEEEECSSSSCEEEEE
T ss_pred             CcEEEEEECCCCCEEEEEeCCCcEEEEeCCc-eeeecc-CC---------------CccccccEEEEEEcCCCCEEEEEc
Confidence            3578999999999777889999999998543 111111 00               000112367899999666788875


Q ss_pred             CCCeEEEEeCCCCeE--------EEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEE
Q 019290          115 AYFGLMVVGPNGGQA--------QQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKY  186 (343)
Q Consensus       115 ~~~gi~~~d~~~~~~--------~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~  186 (343)
                      ....|..+|.++++.        ..+.....+ ....+.++++.| || +..+..                  .+.|..+
T Consensus       149 ~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~g-h~~~V~sVawSP-dg-Laass~------------------D~tVrlW  207 (588)
T 2j04_A          149 EDGELQFFSIRKNSENTPEFYFESSIRLSDAG-SKDWVTHIVWYE-DV-LVAALS------------------NNSVFSM  207 (588)
T ss_dssp             TTSEEEEEECCCCTTTCCCCEEEEEEECSCTT-CCCCEEEEEEET-TE-EEEEET------------------TCCEEEE
T ss_pred             CCCEEEEEECCCCccccccceeeeeeeccccc-ccccEEEEEEcC-Cc-EEEEeC------------------CCeEEEE
Confidence            444588999987742        222111122 235789999999 57 444322                  3467778


Q ss_pred             eCCCCceE----Eee-cCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeee-cCCCCCCceee--CCCC
Q 019290          187 DPLKKNVT----VMY-NGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFA-EMPRFPDNIKS--DSKG  258 (343)
Q Consensus       187 d~~~~~~~----~~~-~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~p~~i~~--d~~G  258 (343)
                      |.+++...    .+. ..-.....++++  +..+..+ . .++|..|++.+.    ....+. ........+.+  .++|
T Consensus       208 d~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa-~-~~tIkLWd~~~~----~~~~~~~gh~~~V~~va~~~s~d~  279 (588)
T 2j04_A          208 TVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLT-C-PGYVHKIDLKNY----SISSLKTGSLENFHIIPLNHEKES  279 (588)
T ss_dssp             CCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEE-C-SSEEEEEETTTT----EEEEEECSCCSCCCEEEETTCSSC
T ss_pred             ECCCCccccceeeecccccCcEEEEEEE--CCEEEEE-e-CCeEEEEECCCC----eEEEEEcCCCceEEEEEeeeCCCC
Confidence            87665531    232 222457888898  4555444 3 589999998763    222222 11222445666  6666


Q ss_pred             CEEEEec
Q 019290          259 EFWIAMN  265 (343)
Q Consensus       259 ~lwi~~~  265 (343)
                      ...+...
T Consensus       280 ~~La~a~  286 (588)
T 2j04_A          280 TILLMSN  286 (588)
T ss_dssp             EEEEECS
T ss_pred             CEEEEEc
Confidence            5554444

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.83  E-value=0.018  Score=52.69  Aligned_cols=225  Identities=12%  Similarity=0.052  Sum_probs=123.7

Q ss_pred             CceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCC
Q 019290           37 PESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAY  116 (343)
Q Consensus        37 p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~  116 (343)
                      ..+++++  ++.++++..++.|..||..+++.....                   .........+.++  ++.+..+...
T Consensus       162 v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~-------------------~~h~~~v~~~~~~--~~~l~s~s~d  218 (445)
T 2ovr_B          162 VWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTL-------------------YGHTSTVRCMHLH--EKRVVSGSRD  218 (445)
T ss_dssp             EEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEE-------------------CCCSSCEEEEEEE--TTEEEEEETT
T ss_pred             EEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEE-------------------CCCCCcEEEEEec--CCEEEEEeCC
Confidence            4566665  566888889999999998876433221                   0122235667776  4667777555


Q ss_pred             CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEe
Q 019290          117 FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVM  196 (343)
Q Consensus       117 ~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~  196 (343)
                      ..|..+|.++++........    ...+..+.++.  ..++.+..                  .+.|..+|..+++....
T Consensus       219 g~i~~wd~~~~~~~~~~~~~----~~~v~~~~~~~--~~l~~~~~------------------dg~i~iwd~~~~~~~~~  274 (445)
T 2ovr_B          219 ATLRVWDIETGQCLHVLMGH----VAAVRCVQYDG--RRVVSGAY------------------DFMVKVWDPETETCLHT  274 (445)
T ss_dssp             SEEEEEESSSCCEEEEEECC----SSCEEEEEECS--SCEEEEET------------------TSCEEEEEGGGTEEEEE
T ss_pred             CEEEEEECCCCcEEEEEcCC----cccEEEEEECC--CEEEEEcC------------------CCEEEEEECCCCcEeEE
Confidence            55999999877654332221    13456666643  45555332                  45688888776654332


Q ss_pred             ec-CCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEeccCCCcccccc
Q 019290          197 YN-GLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNSARGKIESNK  275 (343)
Q Consensus       197 ~~-~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~~~~~~~~~~~  275 (343)
                      .. .......+++  ++..++.+ ..++.|..|++.....   ...+........  .+..++++.++...         
T Consensus       275 ~~~~~~~v~~~~~--~~~~l~~~-~~d~~i~i~d~~~~~~---~~~~~~~~~~v~--~~~~~~~~l~~~~~---------  337 (445)
T 2ovr_B          275 LQGHTNRVYSLQF--DGIHVVSG-SLDTSIRVWDVETGNC---IHTLTGHQSLTS--GMELKDNILVSGNA---------  337 (445)
T ss_dssp             ECCCSSCEEEEEE--CSSEEEEE-ETTSCEEEEETTTCCE---EEEECCCCSCEE--EEEEETTEEEEEET---------
T ss_pred             ecCCCCceEEEEE--CCCEEEEE-eCCCeEEEEECCCCCE---EEEEcCCcccEE--EEEEeCCEEEEEeC---------
Confidence            22 2233455555  66665554 5678999999865221   112111111112  23334555555444         


Q ss_pred             ccccccccCCCcccCCCeEEEECC-CCCEEEEeeCCCCCccCCceeEEEeCCEEEEecCCCCeEEEEc
Q 019290          276 KTAFCEETAKPWFLRDPVGVKFDV-NGNVVDVLDGNEGNTLNSVSEVQEYGEYLYTGSSVQPYVVVIK  342 (343)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~~~~i~~~~  342 (343)
                                     .+.|..+|. +++....+..+.. ....+..+..++ ++.+++.....|.+++
T Consensus       338 ---------------dg~i~vwd~~~~~~~~~~~~~~~-~~~~v~~~~~~~-~~l~s~~~dg~v~iwd  388 (445)
T 2ovr_B          338 ---------------DSTVKIWDIKTGQCLQTLQGPNK-HQSAVTCLQFNK-NFVITSSDDGTVKLWD  388 (445)
T ss_dssp             ---------------TSCEEEEETTTCCEEEEECSTTS-CSSCEEEEEECS-SEEEEEETTSEEEEEE
T ss_pred             ---------------CCeEEEEECCCCcEEEEEccCCC-CCCCEEEEEECC-CEEEEEeCCCeEEEEE
Confidence                           346777776 5676666654322 233444444444 3444444445666554

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=97.82  E-value=0.0013  Score=64.61  Aligned_cols=158  Identities=10%  Similarity=0.104  Sum_probs=89.7

Q ss_pred             CceEEEcCCCCeeE-EEecC----CEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEE
Q 019290           37 PESLAFDCNGEGPY-VGVSD----GRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLY  111 (343)
Q Consensus        37 p~~l~~d~~g~~l~-~~~~~----g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~  111 (343)
                      ..++.++|||+.+. .....    ..|+.+|..+++... .                .....  ....++++++++..|+
T Consensus       123 ~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~-~----------------~~~~~--~~~~~~~wspDg~~l~  183 (695)
T 2bkl_A          123 LGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK-V----------------DVIEG--GKYATPKWTPDSKGFY  183 (695)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS-S----------------CCBSC--CTTCCCEECTTSSEEE
T ss_pred             EEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC-C----------------cccCc--ccccceEEecCCCEEE
Confidence            45788999999554 33223    479999998875420 0                00000  0114677888455677


Q ss_pred             EEeCCCe-------------EEEEeCCCCeE--EEcccccCCCCccCcceeEEeCCCCe-EEEEeCCcccccccceeeee
Q 019290          112 IADAYFG-------------LMVVGPNGGQA--QQLASSAGGIPFRFTNDLDIDPNTGI-VYFTDSSIYFQRRQYFMSIA  175 (343)
Q Consensus       112 v~~~~~g-------------i~~~d~~~~~~--~~~~~~~~~~~~~~~~~i~~d~~dg~-l~v~~~~~~~~~~~~~~~~~  175 (343)
                      ++.....             |+++++.+++.  +.+......  .....++.+++ ||+ |.++...             
T Consensus       184 ~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~--~~~~~~~~~Sp-DG~~l~~~~~~-------------  247 (695)
T 2bkl_A          184 YEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGD--PTTFLQSDLSR-DGKYLFVYILR-------------  247 (695)
T ss_dssp             EEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCC--TTCEEEEEECT-TSCCEEEEEEE-------------
T ss_pred             EEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCC--CEEEEEEEECC-CCCEEEEEEeC-------------
Confidence            6644222             99999887652  222221111  12355778888 576 4443211             


Q ss_pred             ecCCCceEEEEeCCCCceEEeecCCCCcceeEEecCCCEEEEEEc---CCCeEEEEEccC
Q 019290          176 TGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAES---ATLKILRFWLQG  232 (343)
Q Consensus       176 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~---~~~~i~~~~~~~  232 (343)
                       ......|+.++..+++.+.+............ ++++ +|+...   ...+|+++++++
T Consensus       248 -~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~  304 (695)
T 2bkl_A          248 -GWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAK  304 (695)
T ss_dssp             -TTTEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTB
T ss_pred             -CCCceEEEEEcCCCCceEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCC
Confidence             00134688888766676666544433344433 6777 777654   358899999865

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=97.82  E-value=0.002  Score=63.67  Aligned_cols=142  Identities=15%  Similarity=0.042  Sum_probs=87.7

Q ss_pred             CceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCC
Q 019290           37 PESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAY  116 (343)
Q Consensus        37 p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~  116 (343)
                      -.++.+.++|..++.+  ++.|+.||..+++...+.......              .......+..+++++..|.++...
T Consensus        19 ~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~Spdg~~l~~~~~~   82 (740)
T 4a5s_A           19 LYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFD--------------EFGHSINDYSISPDGQFILLEYNY   82 (740)
T ss_dssp             CCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTT--------------TCCSCCCEEEECTTSSEEEEEEEE
T ss_pred             ccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhh--------------hhcccccceEECCCCCEEEEEECC
Confidence            4588999999866654  889999999887765543211100              001112357788855566666421


Q ss_pred             ---------CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCe-EEEEeCCcccccccceeeeeecCCCceEEEE
Q 019290          117 ---------FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGI-VYFTDSSIYFQRRQYFMSIATGDRSGRLLKY  186 (343)
Q Consensus       117 ---------~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~  186 (343)
                               ..++.+|.++++.+.+....     ......++.| ||+ |.++.                   .+.|+.+
T Consensus        83 ~~~~r~~~~~~~~~~d~~~~~~~~l~~~~-----~~~~~~~~SP-dG~~la~~~-------------------~~~i~~~  137 (740)
T 4a5s_A           83 VKQWRHSYTASYDIYDLNKRQLITEERIP-----NNTQWVTWSP-VGHKLAYVW-------------------NNDIYVK  137 (740)
T ss_dssp             EECSSSCEEEEEEEEETTTTEECCSSCCC-----TTEEEEEECS-STTCEEEEE-------------------TTEEEEE
T ss_pred             eeeEEEccceEEEEEECCCCcEEEcccCC-----CcceeeEECC-CCCEEEEEE-------------------CCeEEEE
Confidence                     23779999999876543211     2356778888 565 44432                   2468888


Q ss_pred             eCCCCceEEeecCC-------------------CCcceeEEecCCCEEEEEE
Q 019290          187 DPLKKNVTVMYNGL-------------------SFPNGVALSNNNSFLLLAE  219 (343)
Q Consensus       187 d~~~~~~~~~~~~~-------------------~~~~~i~~~~d~~~lyv~~  219 (343)
                      +..+++...+..+.                   ....+++++|||+.|.+..
T Consensus       138 ~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~  189 (740)
T 4a5s_A          138 IEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQ  189 (740)
T ss_dssp             SSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEE
T ss_pred             ECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEE
Confidence            87777665543221                   1224588999999876653

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.81  E-value=0.026  Score=53.99  Aligned_cols=70  Identities=7%  Similarity=-0.015  Sum_probs=40.9

Q ss_pred             CCeeEEEecCCEEEEEEcCCCCeE-EeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCC------Ce
Q 019290           46 GEGPYVGVSDGRILKWKAANSGWT-EFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAY------FG  118 (343)
Q Consensus        46 g~~l~~~~~~g~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~------~g  118 (343)
                      +..+|+...++.|+.+|..+++.. .+.. ....            .....  .....+.  ++.+|++...      ..
T Consensus       115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~-~~~~------------~~~~~--~~~P~v~--~g~v~vg~~~~~~~~~g~  177 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKTGKINWEVEV-CDPK------------VGSTL--TQAPFVA--KDTVLMGCSGAELGVRGA  177 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEEC-CCGG------------GTCBC--CSCCEEE--TTEEEEECBCGGGTCCCE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEEEecC-CCCC------------cccee--ccCCEEE--CCEEEEEecCCccCCCCE
Confidence            344888888999999999887543 1111 0000            00000  0111233  5789998542      34


Q ss_pred             EEEEeCCCCeEEEc
Q 019290          119 LMVVGPNGGQAQQL  132 (343)
Q Consensus       119 i~~~d~~~~~~~~~  132 (343)
                      |+.+|.++|+...-
T Consensus       178 v~a~D~~tG~~~W~  191 (571)
T 2ad6_A          178 VNAFDLKTGELKWR  191 (571)
T ss_dssp             EEEEETTTCCEEEE
T ss_pred             EEEEECCCCcEEEE
Confidence            99999999987653

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=97.77  E-value=0.015  Score=50.08  Aligned_cols=235  Identities=11%  Similarity=-0.007  Sum_probs=123.8

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      ...++++.++|+.+.++..++.|..|+.++++......                   ........+..+  ...+..+..
T Consensus        69 ~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~-------------------~h~~~~~~~~~~--~~~l~s~~~  127 (318)
T 4ggc_A           69 YISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMT-------------------SHSARVGSLSWN--SYILSSGSR  127 (318)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-------------------CCSSCEEEEEEE--TTEEEEEET
T ss_pred             eEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEec-------------------CccceEEEeecC--CCEEEEEec
Confidence            35789999999988889999999999998765433211                   111122333333  345555543


Q ss_pred             CCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceE-
Q 019290          116 YFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVT-  194 (343)
Q Consensus       116 ~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-  194 (343)
                      ...+..++..++.........   ....+..++..+ ++.+.++...                 .+.|..+|..+++.. 
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~l~s~~~-----------------d~~i~iwd~~~~~~~~  186 (318)
T 4ggc_A          128 SGHIHHHDVRVAEHHVATLSG---HSQEVCGLRWAP-DGRHLASGGN-----------------DNLVNVWPSAPGEGGW  186 (318)
T ss_dssp             TSEEEEEETTSSSCEEEEEEC---CSSCEEEEEECT-TSSEEEEEET-----------------TSCEEEEESSCBTTBS
T ss_pred             CCceEeeecCCCceeEEEEcC---ccCceEEEEEcC-CCCEEEEEec-----------------CcceeEEECCCCcccc
Confidence            333556665544322111111   113456677777 4766654432                 456777787654421 


Q ss_pred             ----EeecCCCCcceeEEecCCCEEEE--EEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEeccCC
Q 019290          195 ----VMYNGLSFPNGVALSNNNSFLLL--AESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNSAR  268 (343)
Q Consensus       195 ----~~~~~~~~~~~i~~~~d~~~lyv--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~~~~  268 (343)
                          ...........+++.+++..+..  +....+.|..|+......    ............++..++++..++.....
T Consensus       187 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~~~sg~~  262 (318)
T 4ggc_A          187 VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC----LSAVDAHSQVCSILWSPHYKELISGHGFA  262 (318)
T ss_dssp             CCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCE----EEEEECSSCEEEEEEETTTTEEEEEECTT
T ss_pred             cceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccc----cccccceeeeeeeeecccccceEEEEEcC
Confidence                11112233456677776654443  344567788888654221    11111122133455666665444332201


Q ss_pred             CccccccccccccccCCCcccCCCeEEEECC-CCCEEEEeeCCCCCccCCceeEEEe-CCEEEEecCCCCeEEEEc
Q 019290          269 GKIESNKKTAFCEETAKPWFLRDPVGVKFDV-NGNVVDVLDGNEGNTLNSVSEVQEY-GEYLYTGSSVQPYVVVIK  342 (343)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~~~~i~~~~  342 (343)
                                            .+.|..+|. +++.+..+...    ...+..+... +|++.++...-..|.+.+
T Consensus       263 ----------------------d~~i~iwd~~~~~~~~~l~gH----~~~V~~l~~spdg~~l~S~s~D~~v~iWd  312 (318)
T 4ggc_A          263 ----------------------QNQLVIWKYPTMAKVAELKGH----TSRVLSLTMSPDGATVASAAADETLRLWR  312 (318)
T ss_dssp             ----------------------TCCEEEEETTTCCEEEEECCC----SSCEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred             ----------------------CCEEEEEECCCCcEEEEEcCC----CCCEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence                                  236667775 57777666532    2345555544 566555555555565543

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=97.77  E-value=0.0066  Score=59.54  Aligned_cols=210  Identities=10%  Similarity=0.043  Sum_probs=109.9

Q ss_pred             CceEEEcCCCCee-EEEecC----CEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEE
Q 019290           37 PESLAFDCNGEGP-YVGVSD----GRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLY  111 (343)
Q Consensus        37 p~~l~~d~~g~~l-~~~~~~----g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~  111 (343)
                      ..++.+++||+.+ |+....    ..|+.+|..+++.......                  ..  ...++++. +++.|+
T Consensus       131 l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~------------------~~--k~~~~~Ws-Dg~~l~  189 (693)
T 3iuj_A          131 LDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLK------------------DV--KFSGISWL-GNEGFF  189 (693)
T ss_dssp             EEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEE------------------EE--ESCCCEEE-TTTEEE
T ss_pred             EEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccC------------------Cc--eeccEEEe-CCCEEE
Confidence            4567899999944 333322    3688899988775432110                  00  01234566 466777


Q ss_pred             EEeCC-------------CeEEEEeCCCCeE--EEcccccCCCCccCcceeEEeCCCCe-EEEEeCCcccccccceeeee
Q 019290          112 IADAY-------------FGLMVVGPNGGQA--QQLASSAGGIPFRFTNDLDIDPNTGI-VYFTDSSIYFQRRQYFMSIA  175 (343)
Q Consensus       112 v~~~~-------------~gi~~~d~~~~~~--~~~~~~~~~~~~~~~~~i~~d~~dg~-l~v~~~~~~~~~~~~~~~~~  175 (343)
                      ++...             ..|+++++.+++.  +.+....... .....++.+++ ||+ |+++...             
T Consensus       190 y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~-~~~~~~~~~Sp-Dg~~l~~~~~~-------------  254 (693)
T 3iuj_A          190 YSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQ-HHRYVGATVTE-DDRFLLISAAN-------------  254 (693)
T ss_dssp             EEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGG-CCSEEEEEECT-TSCEEEEEEES-------------
T ss_pred             EEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCC-CeEEEEEEEcC-CCCEEEEEEcc-------------
Confidence            76433             2288888765532  2222211100 12345677888 576 4443322             


Q ss_pred             ecCCCceEEEEeCCCC--ceEEeecCCCCcceeEEecCCCEEEEEEcC---CCeEEEEEccCccccccceeeecCCCCCC
Q 019290          176 TGDRSGRLLKYDPLKK--NVTVMYNGLSFPNGVALSNNNSFLLLAESA---TLKILRFWLQGERTTYTPQLFAEMPRFPD  250 (343)
Q Consensus       176 ~~~~~~~v~~~d~~~~--~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~p~  250 (343)
                       ......|+.+|.+++  ..+.+......... .++++++.+|+....   ..+|+++++++... .+.+.+....  .+
T Consensus       255 -~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~-~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~-~~~~~l~~~~--~~  329 (693)
T 3iuj_A          255 -STSGNRLYVKDLSQENAPLLTVQGDLDADVS-LVDNKGSTLYLLTNRDAPNRRLVTVDAANPGP-AHWRDLIPER--QQ  329 (693)
T ss_dssp             -SSSCCEEEEEETTSTTCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCG-GGCEEEECCC--SS
T ss_pred             -CCCCcEEEEEECCCCCCceEEEeCCCCceEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCc-cccEEEecCC--CC
Confidence             111347999987655  45555443322222 266778888886543   37899999876332 2233333211  11


Q ss_pred             ceeeCCCCC-EEEEeccCCCccccccccccccccCCCcccCCCeEEEECCCCCEEEEeeC
Q 019290          251 NIKSDSKGE-FWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDG  309 (343)
Q Consensus       251 ~i~~d~~G~-lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~  309 (343)
                      .+.++++|+ |.++... ..                     ...|+.++.+|+....+..
T Consensus       330 ~~~~s~~g~~lv~~~~~-~g---------------------~~~l~~~d~~g~~~~~l~~  367 (693)
T 3iuj_A          330 VLTVHSGSGYLFAEYMV-DA---------------------TARVEQFDYEGKRVREVAL  367 (693)
T ss_dssp             CEEEEEETTEEEEEEEE-TT---------------------EEEEEEECTTSCEEEEECC
T ss_pred             EEEEEEECCEEEEEEEE-CC---------------------eeEEEEEECCCCeeEEeec
Confidence            224455554 4444333 11                     1256777777766555543

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.77  E-value=0.017  Score=50.47  Aligned_cols=215  Identities=8%  Similarity=-0.002  Sum_probs=109.5

Q ss_pred             CEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCC------------CeEEEEe
Q 019290           56 GRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAY------------FGLMVVG  123 (343)
Q Consensus        56 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~------------~gi~~~d  123 (343)
                      ..++.||+.+++|.....+.                 +....-++++..  ++.||+....            +.++++|
T Consensus        13 ~~~~~yd~~~~~W~~~~~~~-----------------p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~d   73 (315)
T 4asc_A           13 EGAVAYDPAANECYCASLSS-----------------QVPKNHVSLVTK--ENQVFVAGGLFYNEDNKEDPMSAYFLQFD   73 (315)
T ss_dssp             TEEEEEETTTTEEEEEECCC-----------------CSCSSEEEEECT--TCCEEEEEEEEECSSCSSSCEEEEEEEEE
T ss_pred             CceEEECCCCCeEecCCCCC-----------------CCCccceEEEEE--CCEEEEEcCcccCCCCCccccccceEEec
Confidence            67999999998887521100                 001112333333  5677765321            1288999


Q ss_pred             CCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEeecCCCC-
Q 019290          124 PNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSF-  202 (343)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-  202 (343)
                      +.+.+++.+......   ..-+.++...  +.+|+.-.....         ........+++||+.+++.+.+...... 
T Consensus        74 ~~~~~W~~~~~~p~~---r~~~~~~~~~--~~lyv~GG~~~~---------~~~~~~~~~~~~d~~~~~W~~~~~~p~~r  139 (315)
T 4asc_A           74 HLDSEWLGMPPLPSP---RCLFGLGEAL--NSIYVVGGREIK---------DGERCLDSVMCYDRLSFKWGESDPLPYVV  139 (315)
T ss_dssp             TTTTEEEECCCBSSC---EESCEEEEET--TEEEEECCEESS---------TTCCBCCCEEEEETTTTEEEECCCCSSCC
T ss_pred             CCCCeEEECCCCCcc---hhceeEEEEC--CEEEEEeCCcCC---------CCCcccceEEEECCCCCcEeECCCCCCcc
Confidence            999998877543322   1223444443  788884321000         0011135699999998887765432111 


Q ss_pred             -cceeEEecCCCEEEEEEcC------CCeEEEEEccCccccccceeeecCCCCCCc--eeeCCCCCEEEEeccCCCcccc
Q 019290          203 -PNGVALSNNNSFLLLAESA------TLKILRFWLQGERTTYTPQLFAEMPRFPDN--IKSDSKGEFWIAMNSARGKIES  273 (343)
Q Consensus       203 -~~~i~~~~d~~~lyv~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~--i~~d~~G~lwi~~~~~~~~~~~  273 (343)
                       ....+. -+ +.+|+..-.      .+.+++||+..+    +...+...+. |..  -+.--+++||+.........  
T Consensus       140 ~~~~~~~-~~-~~iyv~GG~~~~~~~~~~~~~yd~~~~----~W~~~~~~p~-~r~~~~~~~~~~~iyv~GG~~~~~~--  210 (315)
T 4asc_A          140 YGHTVLS-HM-DLVYVIGGKGSDRKCLNKMCVYDPKKF----EWKELAPMQT-ARSLFGATVHDGRIIVAAGVTDTGL--  210 (315)
T ss_dssp             BSCEEEE-ET-TEEEEECCBCTTSCBCCCEEEEETTTT----EEEECCCCSS-CCBSCEEEEETTEEEEEEEECSSSE--
T ss_pred             cceeEEE-EC-CEEEEEeCCCCCCcccceEEEEeCCCC----eEEECCCCCC-chhceEEEEECCEEEEEeccCCCCc--
Confidence             122233 23 457776422      256899987652    2222222221 111  12222677888654312111  


Q ss_pred             ccccccccccCCCcccCCCeEEEECCCCCEEEEee-CCCCCccCCceeEEEeCCEEEEec
Q 019290          274 NKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLD-GNEGNTLNSVSEVQEYGEYLYTGS  332 (343)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~-~~~~~~~~~~~~~~~~~g~l~i~~  332 (343)
                                       ...+.+||++...-..+. .|..   .....+...+++||+-+
T Consensus       211 -----------------~~~~~~yd~~~~~W~~~~~~p~~---r~~~~~~~~~~~l~v~G  250 (315)
T 4asc_A          211 -----------------TSSAEVYSITDNKWAPFEAFPQE---RSSLSLVSLVGTLYAIG  250 (315)
T ss_dssp             -----------------EEEEEEEETTTTEEEEECCCSSC---CBSCEEEEETTEEEEEE
T ss_pred             -----------------cceEEEEECCCCeEEECCCCCCc---ccceeEEEECCEEEEEC
Confidence                             237889998655443333 2222   12223344488888654

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=97.76  E-value=0.0029  Score=64.16  Aligned_cols=157  Identities=8%  Similarity=-0.046  Sum_probs=101.4

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      ...++++.+ |+.+.++..++.|..||..+++...-..                    ....+..+++++++..|+++..
T Consensus        60 ~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~--------------------~~~~V~~v~~sp~g~~l~sgs~  118 (902)
T 2oaj_A           60 AIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF--------------------VPGKITSIDTDASLDWMLIGLQ  118 (902)
T ss_dssp             CEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE--------------------CSSCEEEEECCTTCSEEEEEET
T ss_pred             CEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc--------------------CCCCEEEEEECCCCCEEEEEcC
Confidence            467899999 7877788899999999998765332110                    1124678889985566777754


Q ss_pred             CCeEEEEeCCCCeEEEccc-------ccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeC
Q 019290          116 YFGLMVVGPNGGQAQQLAS-------SAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDP  188 (343)
Q Consensus       116 ~~gi~~~d~~~~~~~~~~~-------~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~  188 (343)
                      ...|..+|.++++...+..       .........+.++++.|.++.+.++...                 .+.| .||.
T Consensus       119 dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~-----------------dg~v-lWd~  180 (902)
T 2oaj_A          119 NGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYE-----------------YVTL-TYSL  180 (902)
T ss_dssp             TSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECS-----------------SCEE-EEET
T ss_pred             CCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeC-----------------CCcE-EEEC
Confidence            4449999999887542210       0011122458899999942344443322                 4567 8888


Q ss_pred             CCCceEEeecC-------------------CCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290          189 LKKNVTVMYNG-------------------LSFPNGVALSNNNSFLLLAESATLKILRFWLQG  232 (343)
Q Consensus       189 ~~~~~~~~~~~-------------------~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~  232 (343)
                      .+++.......                   ......++++|++..+ ++...++.|..|++..
T Consensus       181 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~l-asgs~Dg~i~lWd~~~  242 (902)
T 2oaj_A          181 VENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHI-ITIHEDNSLVFWDANS  242 (902)
T ss_dssp             TTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEE-EEEETTCCEEEEETTT
T ss_pred             CCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEE-EEEECCCeEEEEECCC
Confidence            76664332221                   1336789999998855 4555688999999864

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=97.76  E-value=0.023  Score=55.71  Aligned_cols=157  Identities=13%  Similarity=0.045  Sum_probs=87.3

Q ss_pred             CceEEEcCCCCeeEEEecCC----------------EEEEEEcCCCCeE--EeeecCCCccccccCCCCCcccCCCcCCe
Q 019290           37 PESLAFDCNGEGPYVGVSDG----------------RILKWKAANSGWT--EFATTAPHRAREICDGSTNTTLEPLCGRP   98 (343)
Q Consensus        37 p~~l~~d~~g~~l~~~~~~g----------------~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p   98 (343)
                      ..++++.+||+.+++...++                .|++++..++...  .+...                 .......
T Consensus       173 ~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~-----------------~~~~~~~  235 (710)
T 2xdw_A          173 FSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEF-----------------PDEPKWM  235 (710)
T ss_dssp             SCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECC-----------------TTCTTCE
T ss_pred             cceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEecc-----------------CCCCeEE
Confidence            46799999998676654433                3888887665421  11100                 0111224


Q ss_pred             eeEEEeCCCCeEEEEeC-----CCeEEEEeCCC------C--eEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCccc
Q 019290           99 LGIKFNPVTCDLYIADA-----YFGLMVVGPNG------G--QAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYF  165 (343)
Q Consensus        99 ~gi~~~~~~~~l~v~~~-----~~gi~~~d~~~------~--~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~  165 (343)
                      .++.++++++.|+++..     ...|+.+|.++      +  ..+.+.....     .... .+++.++.+|+....   
T Consensus       236 ~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~-----~~~~-~~s~dg~~l~~~s~~---  306 (710)
T 2xdw_A          236 GGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFE-----GEYD-YVTNEGTVFTFKTNR---  306 (710)
T ss_dssp             EEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSS-----SCEE-EEEEETTEEEEEECT---
T ss_pred             EEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCC-----cEEE-EEeccCCEEEEEECC---
Confidence            57888885556666542     34589999876      4  3444432111     1111 244423567776542   


Q ss_pred             ccccceeeeeecCCCceEEEEeCCCCc---eEEeecCCC--CcceeEEecCCCEEEEEEcCCC--eEEEEEcc
Q 019290          166 QRRQYFMSIATGDRSGRLLKYDPLKKN---VTVMYNGLS--FPNGVALSNNNSFLLLAESATL--KILRFWLQ  231 (343)
Q Consensus       166 ~~~~~~~~~~~~~~~~~v~~~d~~~~~---~~~~~~~~~--~~~~i~~~~d~~~lyv~~~~~~--~i~~~~~~  231 (343)
                                 ......|+.+|.+++.   .+.+.....  ...++++.+ ++.++++...++  +|+++++.
T Consensus       307 -----------~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~lv~~~~~~g~~~l~~~~~~  367 (710)
T 2xdw_A          307 -----------HSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVR-SNFLVLCYLHDVKNTLQLHDLA  367 (710)
T ss_dssp             -----------TCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEET-TTEEEEEEEETTEEEEEEEETT
T ss_pred             -----------CCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEc-CCEEEEEEEECCEEEEEEEECC
Confidence                       1124579999987663   344444332  345677764 455666654443  67888873

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=97.76  E-value=0.01  Score=54.10  Aligned_cols=192  Identities=9%  Similarity=-0.044  Sum_probs=108.8

Q ss_pred             eEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCCCe
Q 019290           39 SLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFG  118 (343)
Q Consensus        39 ~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~~g  118 (343)
                      ..++..++..+.++..++.+..+|...........                  ........++.+.+.+..+..+.....
T Consensus       192 v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~------------------~~h~~~~~~~~~~~~g~~l~s~~~D~~  253 (420)
T 4gga_A          192 VGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATL------------------SGHSQEVCGLRWAPDGRHLASGGNDNL  253 (420)
T ss_dssp             EEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEE------------------ECCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             eEEEeeCCCEEEEEeCCCceeEeeecccceeeEEe------------------cccccceeeeeecCCCCeeeeeecccc
Confidence            34445566767777788888888876533221110                  112234567888874444555543344


Q ss_pred             EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEeec
Q 019290          119 LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYN  198 (343)
Q Consensus       119 i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~  198 (343)
                      +..++..+++...............+..+++.+.+..+.++..+               ...+.|..||..+++......
T Consensus       254 v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~g---------------s~D~~I~iwd~~t~~~~~~~~  318 (420)
T 4gga_A          254 VNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG---------------TSDRHIRIWNVCSGACLSAVD  318 (420)
T ss_dssp             EEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEEC---------------TTTCEEEEEETTTTEEEEEEE
T ss_pred             ceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEee---------------cCCCEEEEEeCCccccceeec
Confidence            88888776542211100001112346677777743445443211               124568888988887655454


Q ss_pred             CCCCcceeEEecCCCEEEEEE-cCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEecc
Q 019290          199 GLSFPNGVALSNNNSFLLLAE-SATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNS  266 (343)
Q Consensus       199 ~~~~~~~i~~~~d~~~lyv~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~~  266 (343)
                      .......+++.++++.++.+. ..++.|..|++.....   ...+..-.+....++++++|++.++...
T Consensus       319 ~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~---v~~l~gH~~~V~~l~~spdg~~l~S~s~  384 (420)
T 4gga_A          319 AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAK---VAELKGHTSRVLSLTMSPDGATVASAAA  384 (420)
T ss_dssp             CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCE---EEEECCCSSCEEEEEECTTSSCEEEEET
T ss_pred             cccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcE---EEEEcCCCCCEEEEEEcCCCCEEEEEec
Confidence            555677888899998877654 3568999999764211   1122111122345678999987776554

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=97.76  E-value=0.037  Score=54.12  Aligned_cols=173  Identities=12%  Similarity=-0.019  Sum_probs=86.7

Q ss_pred             eEEEcCCCCeeEEEecCCEEEEEEcCCCCeE-EeeecCCCccccccCCCCCcccCCCcCCe-eeEEEeCCCCeEEEEeCC
Q 019290           39 SLAFDCNGEGPYVGVSDGRILKWKAANSGWT-EFATTAPHRAREICDGSTNTTLEPLCGRP-LGIKFNPVTCDLYIADAY  116 (343)
Q Consensus        39 ~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~gi~~~~~~~~l~v~~~~  116 (343)
                      +++++  +..+|+.+.+++|+.+|..+++.. .+......               ...... ....+.  ++.+|++...
T Consensus       123 ~~a~~--~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~---------------~~~~~~~~~p~v~--~~~v~v~~~~  183 (677)
T 1kb0_A          123 GVALW--KGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQ---------------KGSLTITGAPRVF--KGKVIIGNGG  183 (677)
T ss_dssp             CCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEETTTTC---------------CSSCBCCSCCEEE--TTEEEECCBC
T ss_pred             CceEE--CCEEEEEcCCCEEEEEECCCCCEEeeecCCcCc---------------CcCcccccCcEEE--CCEEEEEecc
Confidence            44442  445888888999999999887643 22110000               000000 112233  5788887532


Q ss_pred             ------CeEEEEeCCCCeEEEcccccCCC----------------------------CccCcceeEEeCCCCeEEEEeCC
Q 019290          117 ------FGLMVVGPNGGQAQQLASSAGGI----------------------------PFRFTNDLDIDPNTGIVYFTDSS  162 (343)
Q Consensus       117 ------~gi~~~d~~~~~~~~~~~~~~~~----------------------------~~~~~~~i~~d~~dg~l~v~~~~  162 (343)
                            ..|+.+|.++|+...-.......                            .......+++|+..+.+|++...
T Consensus       184 ~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~  263 (677)
T 1kb0_A          184 AEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGN  263 (677)
T ss_dssp             TTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCC
T ss_pred             cccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCC
Confidence                  34999999999876533221110                            00112357888855788887643


Q ss_pred             cccccccceeee---eecCCCceEEEEeCCCCceEEeecC----------CCCcceeEEecCCC--EEEEEEcCCCeEEE
Q 019290          163 IYFQRRQYFMSI---ATGDRSGRLLKYDPLKKNVTVMYNG----------LSFPNGVALSNNNS--FLLLAESATLKILR  227 (343)
Q Consensus       163 ~~~~~~~~~~~~---~~~~~~~~v~~~d~~~~~~~~~~~~----------~~~~~~i~~~~d~~--~lyv~~~~~~~i~~  227 (343)
                      ...  +.....-   ....-.+.|+.+|.++|+..-..+.          ...|.-.....+|+  .+++..+.++.|+.
T Consensus       264 ~~~--w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~  341 (677)
T 1kb0_A          264 GSP--WSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFV  341 (677)
T ss_dssp             EES--SCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEE
T ss_pred             Ccc--ccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEE
Confidence            110  0000000   0000023599999988886532211          11222222223552  23334445677877


Q ss_pred             EEccC
Q 019290          228 FWLQG  232 (343)
Q Consensus       228 ~~~~~  232 (343)
                      +|..+
T Consensus       342 lD~~t  346 (677)
T 1kb0_A          342 LDRTN  346 (677)
T ss_dssp             EETTT
T ss_pred             EECCC
Confidence            77654

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.76  E-value=0.017  Score=50.18  Aligned_cols=224  Identities=10%  Similarity=-0.012  Sum_probs=118.6

Q ss_pred             CCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC-----CCeEEEEeCCCCeE
Q 019290           55 DGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA-----YFGLMVVGPNGGQA  129 (343)
Q Consensus        55 ~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~-----~~gi~~~d~~~~~~  129 (343)
                      ...+++||+.+.+|..+...+                  ....-+.++..  ++.||+...     .+.++++|+.+.++
T Consensus        23 ~~~~~~~d~~~~~W~~~~~~p------------------~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W   82 (306)
T 3ii7_A           23 PQSCRYFNPKDYSWTDIRCPF------------------EKRRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDSW   82 (306)
T ss_dssp             TTSEEEEETTTTEEEECCCCS------------------CCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTTEE
T ss_pred             CceEEEecCCCCCEecCCCCC------------------cccceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCeE
Confidence            456999999999888764211                  11112344444  567887632     14589999999988


Q ss_pred             EEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEeecCCCC--cceeE
Q 019290          130 QQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSF--PNGVA  207 (343)
Q Consensus       130 ~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~--~~~i~  207 (343)
                      +.+......   ..-+.++..  ++.||+.-....           .......+++||+.+.+.+.+......  ....+
T Consensus        83 ~~~~~~p~~---r~~~~~~~~--~~~iyv~GG~~~-----------~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~  146 (306)
T 3ii7_A           83 YSKLGPPTP---RDSLAACAA--EGKIYTSGGSEV-----------GNSALYLFECYDTRTESWHTKPSMLTQRCSHGMV  146 (306)
T ss_dssp             EEEECCSSC---CBSCEEEEE--TTEEEEECCBBT-----------TBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEE
T ss_pred             EECCCCCcc---ccceeEEEE--CCEEEEECCCCC-----------CCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEE
Confidence            877543322   122333333  378888432100           011135699999998887765322111  12222


Q ss_pred             EecCCCEEEEEEcC---------CCeEEEEEccCccccccceeeecCCC--CCCceeeCCCCCEEEEeccCCCccccccc
Q 019290          208 LSNNNSFLLLAESA---------TLKILRFWLQGERTTYTPQLFAEMPR--FPDNIKSDSKGEFWIAMNSARGKIESNKK  276 (343)
Q Consensus       208 ~~~d~~~lyv~~~~---------~~~i~~~~~~~~~~~~~~~~~~~~~~--~p~~i~~d~~G~lwi~~~~~~~~~~~~~~  276 (343)
                      .. + +.+|+..-.         ...+++||+..+    ....+...+.  .-..++.- +++||+.........     
T Consensus       147 ~~-~-~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~----~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~-----  214 (306)
T 3ii7_A          147 EA-N-GLIYVCGGSLGNNVSGRVLNSCEVYDPATE----TWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGG-----  214 (306)
T ss_dssp             EE-T-TEEEEECCEESCTTTCEECCCEEEEETTTT----EEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEE-----
T ss_pred             EE-C-CEEEEECCCCCCCCcccccceEEEeCCCCC----eEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCC-----
Confidence            32 3 457776421         356889987652    2233322221  11122222 677888743211111     


Q ss_pred             cccccccCCCcccCCCeEEEECCCCCEEEEee-CCCCCccCCceeEEEeCCEEEEecC-----CCCeEEEEcC
Q 019290          277 TAFCEETAKPWFLRDPVGVKFDVNGNVVDVLD-GNEGNTLNSVSEVQEYGEYLYTGSS-----VQPYVVVIKA  343 (343)
Q Consensus       277 ~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~-~~~~~~~~~~~~~~~~~g~l~i~~~-----~~~~i~~~~~  343 (343)
                                    ...+.+||+..+.-..+. .|..   .....+...+++||+-+-     ..+.+.+|++
T Consensus       215 --------------~~~~~~yd~~~~~W~~~~~~p~~---r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~  270 (306)
T 3ii7_A          215 --------------LDNVEYYDIKLNEWKMVSPMPWK---GVTVKCAAVGSIVYVLAGFQGVGRLGHILEYNT  270 (306)
T ss_dssp             --------------BCCEEEEETTTTEEEECCCCSCC---BSCCEEEEETTEEEEEECBCSSSBCCEEEEEET
T ss_pred             --------------CceEEEeeCCCCcEEECCCCCCC---ccceeEEEECCEEEEEeCcCCCeeeeeEEEEcC
Confidence                          247889998765444432 2221   122233334888886554     3456777764

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=97.73  E-value=0.0028  Score=55.95  Aligned_cols=117  Identities=9%  Similarity=0.067  Sum_probs=74.7

Q ss_pred             eEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCe-EEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEe
Q 019290          118 GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGI-VYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVM  196 (343)
Q Consensus       118 gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~  196 (343)
                      .|+.+|.++++.+.+         ..+..+++.| ||+ |+++....             +.....|+.++.++++...+
T Consensus        44 ~l~~~d~~~~~~~~l---------~~~~~~~~Sp-Dg~~la~~~~~~-------------~~~~~~l~~~~~~~g~~~~l  100 (347)
T 2gop_A           44 TIVIENLKNNARRFI---------ENATMPRISP-DGKKIAFMRANE-------------EKKVSEIWVADLETLSSKKI  100 (347)
T ss_dssp             EEEEEETTTCCEEEE---------ESCEEEEECT-TSSEEEEEEEET-------------TTTEEEEEEEETTTTEEEEE
T ss_pred             eEEEEeCCCCceEEc---------ccCCCeEECC-CCCEEEEEEecc-------------CCCcceEEEEECCCCceEEE
Confidence            488999988876655         2356788998 575 54432110             01134599999888877655


Q ss_pred             ecCCCCcceeEEecCCCEEEEEEcC--------------------------CCeEEEEEccCccccccc-eeeecCCCCC
Q 019290          197 YNGLSFPNGVALSNNNSFLLLAESA--------------------------TLKILRFWLQGERTTYTP-QLFAEMPRFP  249 (343)
Q Consensus       197 ~~~~~~~~~i~~~~d~~~lyv~~~~--------------------------~~~i~~~~~~~~~~~~~~-~~~~~~~~~p  249 (343)
                      ..... ...++++||++.|+++...                          ...|+++++.+    ++. +.+.. + ..
T Consensus       101 ~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~----~~~~~~l~~-~-~~  173 (347)
T 2gop_A          101 LEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTES----EEVIEEFEK-P-RF  173 (347)
T ss_dssp             EEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTT----TEEEEEEEE-E-TT
T ss_pred             EcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCC----CeEEeeecC-C-Cc
Confidence            43333 6788999999988877532                          35788998865    332 33332 2 35


Q ss_pred             CceeeCCCCCEEEEec
Q 019290          250 DNIKSDSKGEFWIAMN  265 (343)
Q Consensus       250 ~~i~~d~~G~lwi~~~  265 (343)
                      ..+..+++| +.++..
T Consensus       174 ~~~~~spdg-~~~~~~  188 (347)
T 2gop_A          174 SSGIWHRDK-IVVNVP  188 (347)
T ss_dssp             CEEEEETTE-EEEEEE
T ss_pred             ccccCCCCe-EEEEEe
Confidence            567788889 666553

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.70  E-value=0.025  Score=51.74  Aligned_cols=149  Identities=11%  Similarity=0.090  Sum_probs=88.0

Q ss_pred             CceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCC
Q 019290           37 PESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAY  116 (343)
Q Consensus        37 p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~  116 (343)
                      ..++++  +++.++++..+|.|..||..+++......                   .....+..+.++  ++.++.+...
T Consensus       176 v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~-------------------~h~~~v~~l~~~--~~~l~s~s~d  232 (435)
T 1p22_A          176 VLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLI-------------------HHCEAVLHLRFN--NGMMVTCSKD  232 (435)
T ss_dssp             EEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEEC-------------------CCCSCEEEEECC--TTEEEEEETT
T ss_pred             EEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEc-------------------CCCCcEEEEEEc--CCEEEEeeCC
Confidence            445555  77878888999999999988765432211                   112235566665  4577777544


Q ss_pred             CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEE-
Q 019290          117 FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTV-  195 (343)
Q Consensus       117 ~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~-  195 (343)
                      ..|..+|.++++.........+ ....+..+.++.  ..++.+..                  .+.|..+|..+++... 
T Consensus       233 g~i~vwd~~~~~~~~~~~~~~~-~~~~v~~~~~~~--~~l~s~~~------------------dg~i~vwd~~~~~~~~~  291 (435)
T 1p22_A          233 RSIAVWDMASPTDITLRRVLVG-HRAAVNVVDFDD--KYIVSASG------------------DRTIKVWNTSTCEFVRT  291 (435)
T ss_dssp             SCEEEEECSSSSCCEEEEEECC-CSSCEEEEEEET--TEEEEEET------------------TSEEEEEETTTCCEEEE
T ss_pred             CcEEEEeCCCCCCceeeeEecC-CCCcEEEEEeCC--CEEEEEeC------------------CCeEEEEECCcCcEEEE
Confidence            4588999876643211111111 113456677754  45555432                  4578888987766543 


Q ss_pred             eecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290          196 MYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQG  232 (343)
Q Consensus       196 ~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~  232 (343)
                      +.........+++  +++.+ ++...++.|..|++..
T Consensus       292 ~~~~~~~v~~~~~--~~~~l-~~g~~dg~i~iwd~~~  325 (435)
T 1p22_A          292 LNGHKRGIACLQY--RDRLV-VSGSSDNTIRLWDIEC  325 (435)
T ss_dssp             EECCSSCEEEEEE--ETTEE-EEEETTSCEEEEETTT
T ss_pred             EcCCCCcEEEEEe--CCCEE-EEEeCCCeEEEEECCC
Confidence            2222333455555  45544 4555688999999865

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=97.69  E-value=0.0024  Score=63.13  Aligned_cols=158  Identities=14%  Similarity=0.017  Sum_probs=89.8

Q ss_pred             CceEEEcCCCCeeEEE-ecCC----EEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEE
Q 019290           37 PESLAFDCNGEGPYVG-VSDG----RILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLY  111 (343)
Q Consensus        37 p~~l~~d~~g~~l~~~-~~~g----~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~  111 (343)
                      ..++.++|||+.+.+. ..+|    .|+.+|..+++.......                    .....+++++++ +.|+
T Consensus       165 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~--------------------~~~~~~~~wspD-~~l~  223 (741)
T 1yr2_A          165 LDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELK--------------------WVKFSGLAWLGN-DALL  223 (741)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEE--------------------EEESCCCEESTT-SEEE
T ss_pred             EEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCC--------------------CceeccEEEECC-CEEE
Confidence            4578899999955433 3323    599999988775432110                    000135667775 7777


Q ss_pred             EEeCC--------------CeEEEEeCCCCeE--EEcccccCCCCccCcceeEEeCCCCe-EEEEeCCcccccccceeee
Q 019290          112 IADAY--------------FGLMVVGPNGGQA--QQLASSAGGIPFRFTNDLDIDPNTGI-VYFTDSSIYFQRRQYFMSI  174 (343)
Q Consensus       112 v~~~~--------------~gi~~~d~~~~~~--~~~~~~~~~~~~~~~~~i~~d~~dg~-l~v~~~~~~~~~~~~~~~~  174 (343)
                      ++...              ..|++++..+++.  +.+......  .....++.+++ ||+ |.++....           
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~--~~~~~~~~~Sp-DG~~l~~~~~~~-----------  289 (741)
T 1yr2_A          224 YSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPEL--PKRGHGASVSS-DGRWVVITSSEG-----------  289 (741)
T ss_dssp             EEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTC--TTCEEEEEECT-TSCEEEEEEECT-----------
T ss_pred             EEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCC--CeEEEEEEECC-CCCEEEEEEEcc-----------
Confidence            76432              1388888876542  122111111  12356778888 575 44432210           


Q ss_pred             eecCCCceEEEEeCCCC--c-eEEeecCCCCcceeEEecCCCEEEEEEcC---CCeEEEEEccC
Q 019290          175 ATGDRSGRLLKYDPLKK--N-VTVMYNGLSFPNGVALSNNNSFLLLAESA---TLKILRFWLQG  232 (343)
Q Consensus       175 ~~~~~~~~v~~~d~~~~--~-~~~~~~~~~~~~~i~~~~d~~~lyv~~~~---~~~i~~~~~~~  232 (343)
                        ......|+.+|.+++  + .+.+.......... ++++++.+|+....   ..+|+++++++
T Consensus       290 --~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~  350 (741)
T 1yr2_A          290 --TDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSG  350 (741)
T ss_dssp             --TCSCCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSS
T ss_pred             --CCCcceEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCC
Confidence              001346888888766  5 55555433333333 45788888887543   46799999865

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.69  E-value=0.022  Score=49.61  Aligned_cols=223  Identities=13%  Similarity=0.060  Sum_probs=117.4

Q ss_pred             CEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCC----------CeEEEEeCC
Q 019290           56 GRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAY----------FGLMVVGPN  125 (343)
Q Consensus        56 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~----------~gi~~~d~~  125 (343)
                      ..++.||+.+.+|..+...+                  ....-++++..  ++.||+....          +.++++|+.
T Consensus        39 ~~~~~~d~~~~~W~~~~~~p------------------~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~   98 (308)
T 1zgk_A           39 SYLEAYNPSNGTWLRLADLQ------------------VPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPM   98 (308)
T ss_dssp             CCEEEEETTTTEEEECCCCS------------------SCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETT
T ss_pred             ceEEEEcCCCCeEeECCCCC------------------cccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCC
Confidence            36899999998888763211                  11112344444  5678876321          248999999


Q ss_pred             CCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEeecCCCC--c
Q 019290          126 GGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSF--P  203 (343)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~--~  203 (343)
                      +.+++.+......   ..-..++.-  ++.||+.-....            ......+++||+.+.+.+.+......  .
T Consensus        99 ~~~W~~~~~~p~~---r~~~~~~~~--~~~iyv~GG~~~------------~~~~~~~~~yd~~~~~W~~~~~~p~~r~~  161 (308)
T 1zgk_A           99 TNQWSPCAPMSVP---RNRIGVGVI--DGHIYAVGGSHG------------CIHHNSVERYEPERDEWHLVAPMLTRRIG  161 (308)
T ss_dssp             TTEEEECCCCSSC---CBTCEEEEE--TTEEEEECCEET------------TEECCCEEEEETTTTEEEECCCCSSCCBS
T ss_pred             CCeEeECCCCCcC---ccccEEEEE--CCEEEEEcCCCC------------CcccccEEEECCCCCeEeECCCCCccccc
Confidence            9998887543322   122333433  378888432100            00134699999998887765422111  1


Q ss_pred             ceeEEecCCCEEEEEEcC-----CCeEEEEEccCccccccceeeecCCC--CCCceeeCCCCCEEEEeccCCCccccccc
Q 019290          204 NGVALSNNNSFLLLAESA-----TLKILRFWLQGERTTYTPQLFAEMPR--FPDNIKSDSKGEFWIAMNSARGKIESNKK  276 (343)
Q Consensus       204 ~~i~~~~d~~~lyv~~~~-----~~~i~~~~~~~~~~~~~~~~~~~~~~--~p~~i~~d~~G~lwi~~~~~~~~~~~~~~  276 (343)
                      ...++.  ++.+|+..-.     .+.+++|++..+    +...+...+.  .-..++.. +++||+.........     
T Consensus       162 ~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~----~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~-----  229 (308)
T 1zgk_A          162 VGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERN----EWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQ-----  229 (308)
T ss_dssp             CEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTT----EEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSB-----
T ss_pred             eEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCC----eEeeCCCCCCccccceEEEE-CCEEEEEeCCCCCCc-----
Confidence            223332  3467776321     356899997652    2222222221  11122332 677888754311111     


Q ss_pred             cccccccCCCcccCCCeEEEECCCCCEEEEeeCCCCCccCCceeEEEeCCEEEEecC-----CCCeEEEEcC
Q 019290          277 TAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEGNTLNSVSEVQEYGEYLYTGSS-----VQPYVVVIKA  343 (343)
Q Consensus       277 ~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~-----~~~~i~~~~~  343 (343)
                                    ...+.+||++...-..+.....  ......+...+++||+-+-     ..+.+.+|++
T Consensus       230 --------------~~~v~~yd~~~~~W~~~~~~p~--~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~  285 (308)
T 1zgk_A          230 --------------LNSVERYDVETETWTFVAPMKH--RRSALGITVHQGRIYVLGGYDGHTFLDSVECYDP  285 (308)
T ss_dssp             --------------CCCEEEEETTTTEEEECCCCSS--CCBSCEEEEETTEEEEECCBCSSCBCCEEEEEET
T ss_pred             --------------cceEEEEeCCCCcEEECCCCCC--CccceEEEEECCEEEEEcCcCCCcccceEEEEcC
Confidence                          2478899987655444432111  1122233334888886543     2456777764

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.69  E-value=0.014  Score=56.80  Aligned_cols=115  Identities=10%  Similarity=0.011  Sum_probs=68.2

Q ss_pred             ccccccccCCCCCCCceEEEcC-CCCeeEEEecC-----------CEEEEEEcCCCCeEEeeecCCCccccccCCCCCcc
Q 019290           23 SKSYQQLQLPGVVGPESLAFDC-NGEGPYVGVSD-----------GRILKWKAANSGWTEFATTAPHRAREICDGSTNTT   90 (343)
Q Consensus        23 ~~~~~~~~~~~~~~p~~l~~d~-~g~~l~~~~~~-----------g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (343)
                      ..|....++|.  .+...++.+ +|+++.++..+           ..++.||+.+.+|..+...+.              
T Consensus       176 ~~W~~~~~~P~--~~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~--------------  239 (656)
T 1k3i_A          176 GRWGPTIDLPI--VPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVT--------------  239 (656)
T ss_dssp             CEEEEEEECSS--CCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEEC--------------
T ss_pred             CeeeeeccCCC--CceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCC--------------
Confidence            34444455665  456777777 77755554321           158899999888765532110              


Q ss_pred             cCCCcCCeeeEEEeCCCCeEEEEeCC--CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEe
Q 019290           91 LEPLCGRPLGIKFNPVTCDLYIADAY--FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTD  160 (343)
Q Consensus        91 ~~~~~~~p~gi~~~~~~~~l~v~~~~--~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~  160 (343)
                        .......+.++.. ++.||+....  ..+++||+.+.+++.+......   ..-..+++-+ +|++|+.-
T Consensus       240 --~~~~~~~~~~~~~-~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~---R~~~s~~~~~-dg~iyv~G  304 (656)
T 1k3i_A          240 --KHDMFCPGISMDG-NGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVA---RGYQSSATMS-DGRVFTIG  304 (656)
T ss_dssp             --SCCCSSCEEEECT-TSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSC---CSSCEEEECT-TSCEEEEC
T ss_pred             --CCCCccccccCCC-CCCEEEeCCCCCCceEEecCcCCceeECCCCCcc---ccccceEEec-CCeEEEEe
Confidence              0011123456665 7888887432  2499999999988877543322   2234556665 48888754

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=97.65  E-value=0.048  Score=53.41  Aligned_cols=40  Identities=10%  Similarity=0.013  Sum_probs=26.7

Q ss_pred             CeEEEECC-CCCEEEEeeCCCCCccCCceeEEEeCCEEEEecC
Q 019290          292 PVGVKFDV-NGNVVDVLDGNEGNTLNSVSEVQEYGEYLYTGSS  333 (343)
Q Consensus       292 ~~v~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~  333 (343)
                      +.++.+|. +|+++-.+..+.+.....++.  +.+|+.||+..
T Consensus       496 g~l~a~D~~tG~~lw~~~~~~~~~~~p~ty--~~~G~qyv~~~  536 (689)
T 1yiq_A          496 GRVIAYAADTGEKLWEQPAASGVMAAPVTY--SVDGEQYVTFM  536 (689)
T ss_dssp             SEEEEEETTTCCEEEEEECSSCCCSCCEEE--EETTEEEEEEE
T ss_pred             CcEEEEECCCCccceeeeCCCCcccCceEE--EECCEEEEEEE
Confidence            57889997 699988887765533333333  34889887643

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.62  E-value=0.031  Score=49.29  Aligned_cols=198  Identities=12%  Similarity=0.172  Sum_probs=107.2

Q ss_pred             ccccccccCCCCCCCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEE
Q 019290           23 SKSYQQLQLPGVVGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIK  102 (343)
Q Consensus        23 ~~~~~~~~~~~~~~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~  102 (343)
                      -...+++.+|......+|.+.+++. +|+....+.|++-...+..|+......                ........++.
T Consensus        24 g~~W~~~~~~~~~~~~~v~~~~~~~-~~~~G~~g~i~~s~DgG~tW~~~~~~~----------------~~~~~~~~~i~   86 (327)
T 2xbg_A           24 YNPWEAIQLPTTATILDMSFIDRHH-GWLVGVNATLMETRDGGQTWEPRTLVL----------------DHSDYRFNSVS   86 (327)
T ss_dssp             SCCEEEEECSCSSCEEEEEESSSSC-EEEEETTTEEEEESSTTSSCEECCCCC----------------SCCCCEEEEEE
T ss_pred             CCCceEeecCCCCcEEEEEECCCCc-EEEEcCCCeEEEeCCCCCCCeECCCCC----------------CCCCccEEEEE
Confidence            3345666667544677888887777 555556777888765556777653110                00111245788


Q ss_pred             EeCCCCeEEEEeCCCeEEEEeCCCC-eEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCc
Q 019290          103 FNPVTCDLYIADAYFGLMVVGPNGG-QAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSG  181 (343)
Q Consensus       103 ~~~~~~~l~v~~~~~gi~~~d~~~~-~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~  181 (343)
                      +++  +.+|++....+|++ ..+.| .++.+.... ..+ ..+..++..+ ++++|++..                  .+
T Consensus        87 ~~~--~~~~~~g~~g~i~~-S~DgG~tW~~~~~~~-~~~-~~~~~i~~~~-~~~~~~~~~------------------~g  142 (327)
T 2xbg_A           87 FQG--NEGWIVGEPPIMLH-TTDGGQSWSQIPLDP-KLP-GSPRLIKALG-NGSAEMITN------------------VG  142 (327)
T ss_dssp             EET--TEEEEEEETTEEEE-ESSTTSSCEECCCCT-TCS-SCEEEEEEEE-TTEEEEEET------------------TC
T ss_pred             ecC--CeEEEEECCCeEEE-ECCCCCCceECcccc-CCC-CCeEEEEEEC-CCCEEEEeC------------------Cc
Confidence            874  67887743344665 44433 345443211 111 1246677766 488888543                  34


Q ss_pred             eEEEEeCCCCceEEeecCC-CCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeec-CCCCCCceeeCCCCC
Q 019290          182 RLLKYDPLKKNVTVMYNGL-SFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAE-MPRFPDNIKSDSKGE  259 (343)
Q Consensus       182 ~v~~~d~~~~~~~~~~~~~-~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~G~  259 (343)
                      .|++-.-.+...+...... ....++++.+++. +|+.. ..+.+++-+-.+.   ...+.+.. .......++++++|+
T Consensus       143 ~v~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~-~~~~g-~~G~~~~S~d~gG---~tW~~~~~~~~~~~~~~~~~~~g~  217 (327)
T 2xbg_A          143 AIYRTKDSGKNWQALVQEAIGVMRNLNRSPSGE-YVAVS-SRGSFYSTWEPGQ---TAWEPHNRTTSRRLHNMGFTPDGR  217 (327)
T ss_dssp             CEEEESSTTSSEEEEECSCCCCEEEEEECTTSC-EEEEE-TTSSEEEEECTTC---SSCEEEECCSSSCEEEEEECTTSC
T ss_pred             cEEEEcCCCCCCEEeecCCCcceEEEEEcCCCc-EEEEE-CCCcEEEEeCCCC---CceeECCCCCCCccceeEECCCCC
Confidence            5776543334455443322 2345677777765 44444 3567777653211   12222211 111223466788899


Q ss_pred             EEEEecc
Q 019290          260 FWIAMNS  266 (343)
Q Consensus       260 lwi~~~~  266 (343)
                      +|++...
T Consensus       218 ~~~~~~~  224 (327)
T 2xbg_A          218 LWMIVNG  224 (327)
T ss_dssp             EEEEETT
T ss_pred             EEEEeCC
Confidence            9988765

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=97.60  E-value=0.0098  Score=54.84  Aligned_cols=158  Identities=13%  Similarity=0.085  Sum_probs=90.3

Q ss_pred             CCceEEEcCCCCeeE----EEecCCEEEEEEcCCC-----C----eEEeeecCCCccccccCCCCCcccCCCcCCeeeEE
Q 019290           36 GPESLAFDCNGEGPY----VGVSDGRILKWKAANS-----G----WTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIK  102 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~----~~~~~g~i~~~d~~~~-----~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~  102 (343)
                      .+.+++++++|+.+.    ++..++.|..||..+.     .    +..+.                 ........+.+++
T Consensus        94 ~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~-----------------~~~~h~~~V~~v~  156 (434)
T 2oit_A           94 PIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHK-----------------LLKDAGGMVIDMK  156 (434)
T ss_dssp             CEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEE-----------------CCCSGGGSEEEEE
T ss_pred             cccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeee-----------------ccCCCCCceEEEE
Confidence            478999999999777    4556788999986542     0    01111                 0001123567899


Q ss_pred             EeCCCCeEEEEeCCCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCc
Q 019290          103 FNPVTCDLYIADAYFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSG  181 (343)
Q Consensus       103 ~~~~~~~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~  181 (343)
                      +++.++.++++...+| |..+|.+++..... ...   ....+..+++.+ +|...++...                 .+
T Consensus       157 ~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~-~~~---~~~~v~~v~wsp-dg~~lasgs~-----------------dg  214 (434)
T 2oit_A          157 WNPTVPSMVAVCLADGSIAVLQVTETVKVCA-TLP---STVAVTSVCWSP-KGKQLAVGKQ-----------------NG  214 (434)
T ss_dssp             ECSSCTTEEEEEETTSCEEEEEESSSEEEEE-EEC---GGGCEEEEEECT-TSSCEEEEET-----------------TS
T ss_pred             ECCCCCCEEEEEECCCeEEEEEcCCCcceee-ccC---CCCceeEEEEcC-CCCEEEEEcC-----------------CC
Confidence            9984355555434445 89999987743211 111   123578899999 4765553322                 46


Q ss_pred             eEEEEeCCCCceEEeecCCC-------CcceeEEecCCCEEEEEEcCCC------eEEEEEccC
Q 019290          182 RLLKYDPLKKNVTVMYNGLS-------FPNGVALSNNNSFLLLAESATL------KILRFWLQG  232 (343)
Q Consensus       182 ~v~~~d~~~~~~~~~~~~~~-------~~~~i~~~~d~~~lyv~~~~~~------~i~~~~~~~  232 (343)
                      .|..||........+.....       ....+++++++..+.......+      .+..|++..
T Consensus       215 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~  278 (434)
T 2oit_A          215 TVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPK  278 (434)
T ss_dssp             CEEEECTTCCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCC
T ss_pred             cEEEEccCCcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEecc
Confidence            78888887222222221111       3456777776654444443332      377777653

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.59  E-value=0.04  Score=53.81  Aligned_cols=40  Identities=10%  Similarity=0.112  Sum_probs=26.1

Q ss_pred             CeEEEECC-CCCEEEEeeCCCCCccCCceeEEEeCCEEEEecC
Q 019290          292 PVGVKFDV-NGNVVDVLDGNEGNTLNSVSEVQEYGEYLYTGSS  333 (343)
Q Consensus       292 ~~v~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~  333 (343)
                      +.++.+|. .|+++..+..+.+.....++.  ..+|++|++..
T Consensus       479 g~l~a~d~~tG~~l~~~~~~~~~~~~p~~~--~~~G~~yva~~  519 (668)
T 1kv9_A          479 GQMHAYSADKGEALWQFEAQSGIVAAPMTF--ELAGRQYVAIM  519 (668)
T ss_dssp             SEEEEEETTTCCEEEEEECSSCCCSCCEEE--EETTEEEEEEE
T ss_pred             ccchhhhhhcChhheEecCCCCcccCceEE--EECCEEEEEEE
Confidence            58889997 588888887665432233332  34888887643

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.58  E-value=0.031  Score=48.39  Aligned_cols=222  Identities=11%  Similarity=0.035  Sum_probs=117.0

Q ss_pred             CEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCC------CeEEEEeCCCCeE
Q 019290           56 GRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAY------FGLMVVGPNGGQA  129 (343)
Q Consensus        56 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~------~gi~~~d~~~~~~  129 (343)
                      ..++.||+.+..|..+...+                  ....-++++..  ++.||+....      +.++++|+.+.++
T Consensus        30 ~~~~~~d~~~~~W~~~~~~p------------------~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W   89 (302)
T 2xn4_A           30 RSVECYDFKEERWHQVAELP------------------SRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQW   89 (302)
T ss_dssp             CCEEEEETTTTEEEEECCCS------------------SCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEE
T ss_pred             CcEEEEcCcCCcEeEcccCC------------------cccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCce
Confidence            35889999988888763211                  11112344444  5778876321      3489999999998


Q ss_pred             EEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEeecCCCC--cceeE
Q 019290          130 QQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSF--PNGVA  207 (343)
Q Consensus       130 ~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~--~~~i~  207 (343)
                      +.+......   ..-+.+++-  ++.+|+.-...            .......+++||+.+.+.+.+......  ....+
T Consensus        90 ~~~~~~p~~---r~~~~~~~~--~~~iyv~GG~~------------~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~  152 (302)
T 2xn4_A           90 TSVANMRDR---RSTLGAAVL--NGLLYAVGGFD------------GSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVG  152 (302)
T ss_dssp             EEECCCSSC---CBSCEEEEE--TTEEEEEEEEC------------SSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEE
T ss_pred             eeCCCCCcc---ccceEEEEE--CCEEEEEcCCC------------CCccCceEEEEeCCCCeEeecCCCCCcccCceEE
Confidence            887543322   122344443  37888843110            001124689999998887765422111  12223


Q ss_pred             EecCCCEEEEEEcC-------CCeEEEEEccCccccccceeeecCCC--CCCceeeCCCCCEEEEeccCCCccccccccc
Q 019290          208 LSNNNSFLLLAESA-------TLKILRFWLQGERTTYTPQLFAEMPR--FPDNIKSDSKGEFWIAMNSARGKIESNKKTA  278 (343)
Q Consensus       208 ~~~d~~~lyv~~~~-------~~~i~~~~~~~~~~~~~~~~~~~~~~--~p~~i~~d~~G~lwi~~~~~~~~~~~~~~~~  278 (343)
                      ..  ++.+|+..-.       ...+++||+..+    ....+...+.  .-..++. -+++||+.....+...       
T Consensus       153 ~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~----~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~-------  218 (302)
T 2xn4_A          153 VV--GGLLYAVGGYDVASRQCLSTVECYNATTN----EWTYIAEMSTRRSGAGVGV-LNNLLYAVGGHDGPLV-------  218 (302)
T ss_dssp             EE--TTEEEEECCEETTTTEECCCEEEEETTTT----EEEEECCCSSCCBSCEEEE-ETTEEEEECCBSSSSB-------
T ss_pred             EE--CCEEEEEeCCCCCCCccccEEEEEeCCCC----cEEECCCCccccccccEEE-ECCEEEEECCCCCCcc-------
Confidence            32  3457776311       356889997652    2222222221  0112222 2578888754322211       


Q ss_pred             cccccCCCcccCCCeEEEECCCCCEEEEee-CCCCCccCCceeEEEeCCEEEEecCC-----CCeEEEEcC
Q 019290          279 FCEETAKPWFLRDPVGVKFDVNGNVVDVLD-GNEGNTLNSVSEVQEYGEYLYTGSSV-----QPYVVVIKA  343 (343)
Q Consensus       279 ~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~-~~~~~~~~~~~~~~~~~g~l~i~~~~-----~~~i~~~~~  343 (343)
                                  ...+.+||++...-..+. .|..   .....+...+++||+-+-.     .+.+.+|++
T Consensus       219 ------------~~~~~~yd~~~~~W~~~~~~~~~---r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~  274 (302)
T 2xn4_A          219 ------------RKSVEVYDPTTNAWRQVADMNMC---RRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNP  274 (302)
T ss_dssp             ------------CCCEEEEETTTTEEEEECCCSSC---CBSCEEEEETTEEEEECCBCSSSBCCCEEEEET
T ss_pred             ------------cceEEEEeCCCCCEeeCCCCCCc---cccCeEEEECCEEEEECCcCCCcccccEEEEcC
Confidence                        247889998755444433 2222   1222344458888865432     245777764

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=97.57  E-value=0.038  Score=49.12  Aligned_cols=177  Identities=7%  Similarity=-0.029  Sum_probs=99.7

Q ss_pred             CceEEEcCCCCeeE-EEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           37 PESLAFDCNGEGPY-VGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        37 p~~l~~d~~g~~l~-~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      ...+.+..+++.+. ++..++.|..||..+++...-..                    ....+..+.+++  +.+.++ .
T Consensus        61 ~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~--------------------~~~~v~~v~~~~--~~~~~~-~  117 (355)
T 3vu4_A           61 LSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK--------------------VDAPVKDLFLSR--EFIVVS-Y  117 (355)
T ss_dssp             CCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE--------------------CSSCEEEEEECS--SEEEEE-E
T ss_pred             eEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE--------------------CCCceEEEEEcC--CEEEEE-E
Confidence            55677777777553 45666789999987764332111                    112356777775  455555 3


Q ss_pred             CCeEEEEeCCCC-eEEEcccccCCCCccCcce-eEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCc-
Q 019290          116 YFGLMVVGPNGG-QAQQLASSAGGIPFRFTND-LDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKN-  192 (343)
Q Consensus       116 ~~gi~~~d~~~~-~~~~~~~~~~~~~~~~~~~-i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~-  192 (343)
                      ...++.+|..++ +.  +.... .     +.+ .++.+  +.+.++..                ...+.|..+|..++. 
T Consensus       118 ~~~i~i~d~~~~~~~--~~~~~-~-----~~~~~~~s~--~~la~~sg----------------~~~g~v~iwd~~~~~~  171 (355)
T 3vu4_A          118 GDVISVFKFGNPWKR--ITDDI-R-----FGGVCEFSN--GLLVYSNE----------------FNLGQIHITKLQSSGS  171 (355)
T ss_dssp             TTEEEEEESSTTCCB--SSCCE-E-----EEEEEEEET--TEEEEEES----------------SCTTCEEEEECCC---
T ss_pred             cCEEEEEECCCCcee--eEEec-c-----CCceEEEEc--cEEEEeCC----------------CcCcEEEEEECCCCCc
Confidence            567899998765 21  11100 0     111 23333  34444311                114567777776544 


Q ss_pred             ----------------eEEeecCCCCcceeEEecCCCEEEEEEcCCCe-EEEEEccCccccccceeeec--CCCCCCcee
Q 019290          193 ----------------VTVMYNGLSFPNGVALSNNNSFLLLAESATLK-ILRFWLQGERTTYTPQLFAE--MPRFPDNIK  253 (343)
Q Consensus       193 ----------------~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~-i~~~~~~~~~~~~~~~~~~~--~~~~p~~i~  253 (343)
                                      ...+.........+++++++..|. +.+.++. |..|++.....   ...+..  ..+....++
T Consensus       172 ~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~-s~s~d~~~v~iwd~~~~~~---~~~~~~g~h~~~v~~~~  247 (355)
T 3vu4_A          172 ATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVA-TCSQDGTIIRVFKTEDGVL---VREFRRGLDRADVVDMK  247 (355)
T ss_dssp             ---------------CCEEECCCSSCEEEEEECTTSSEEE-EEETTCSEEEEEETTTCCE---EEEEECTTCCSCEEEEE
T ss_pred             cccccccccccccCcccEEEEccCCceEEEEECCCCCEEE-EEeCCCCEEEEEECCCCcE---EEEEEcCCCCCcEEEEE
Confidence                            344444445678999999998554 5556787 99999875221   122221  122234577


Q ss_pred             eCCCCCEEEEecc
Q 019290          254 SDSKGEFWIAMNS  266 (343)
Q Consensus       254 ~d~~G~lwi~~~~  266 (343)
                      ++++|++.++...
T Consensus       248 ~s~~~~~l~s~s~  260 (355)
T 3vu4_A          248 WSTDGSKLAVVSD  260 (355)
T ss_dssp             ECTTSCEEEEEET
T ss_pred             ECCCCCEEEEEEC
Confidence            8899987776654

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=97.54  E-value=0.0018  Score=61.00  Aligned_cols=125  Identities=18%  Similarity=0.362  Sum_probs=76.9

Q ss_pred             CCCCCceEEEcCC-CCeeEEE-ec---------------------CCEEEEEEcCCC-------CeEEeeecCCCcccc-
Q 019290           33 GVVGPESLAFDCN-GEGPYVG-VS---------------------DGRILKWKAANS-------GWTEFATTAPHRARE-   81 (343)
Q Consensus        33 ~~~~p~~l~~d~~-g~~l~~~-~~---------------------~g~i~~~d~~~~-------~~~~~~~~~~~~~~~-   81 (343)
                      .+..||++.+++. |. +|++ ++                     .|.|+++.+..+       +|..+.....-.... 
T Consensus       382 ~mdRpEdi~v~p~~g~-vY~alTnn~~rg~~~~~~~~~Npr~~n~~G~I~r~~e~~~d~~a~~f~W~i~l~~G~p~~~~~  460 (592)
T 4a9v_A          382 RMDRPEWIVVSPKDGQ-VYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAG  460 (592)
T ss_dssp             CEECEEEEEECTTTCC-EEEEECCBTTTTSTTSCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTT
T ss_pred             cccCccceeEcCCCCE-EEEEEeCCCCCCCcCccccCCCCccCCCCCeEEEEeeCCCCcccceeeEEEEEEccCCccccc
Confidence            3447999999984 66 5543 32                     278999976432       245554321110000 


Q ss_pred             -ccCCCCCcccCCCcCCeeeEEEeCCCCeEEEE-eCC------------CeEEEEeCCCCeEEEcccccCCCCccCccee
Q 019290           82 -ICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIA-DAY------------FGLMVVGPNGGQAQQLASSAGGIPFRFTNDL  147 (343)
Q Consensus        82 -~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~-~~~------------~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i  147 (343)
                       ...+.........+..|.+|.+++ +|+|||+ |..            ++++++++++|+++.+.....   ...++++
T Consensus       461 ~~~~g~~~~~~~~~fnsPDnL~fd~-~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~---~aEpnGi  536 (592)
T 4a9v_A          461 TPKGGSSNITPQNMFNSPDGLGFDK-AGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPI---GCEVTGI  536 (592)
T ss_dssp             SGGGCCTTCCTTTCCCCEEEEEECT-TCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCT---TCEEEEE
T ss_pred             ccccCccCccccCccCCCCceEECC-CCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCC---CccccCC
Confidence             000111112223467899999998 8999994 321            269999999999888764322   2458999


Q ss_pred             EEeCCCCeEEEEeCC
Q 019290          148 DIDPNTGIVYFTDSS  162 (343)
Q Consensus       148 ~~d~~dg~l~v~~~~  162 (343)
                      ++.|+...|||+-++
T Consensus       537 afSPD~ktLfV~vQH  551 (592)
T 4a9v_A          537 SFSPDQKTLFVGIQH  551 (592)
T ss_dssp             EECTTSSEEEEEEES
T ss_pred             EECCCCCEEEEEEeC
Confidence            999953468886655

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.53  E-value=0.037  Score=47.85  Aligned_cols=221  Identities=7%  Similarity=0.041  Sum_probs=116.8

Q ss_pred             CEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCC------CeEEEEeCCCCe-
Q 019290           56 GRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAY------FGLMVVGPNGGQ-  128 (343)
Q Consensus        56 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~------~gi~~~d~~~~~-  128 (343)
                      ..++.||+.+.+|..+...+                  ....-+.++..  ++.||+....      +.++++|+.+.+ 
T Consensus        31 ~~~~~~d~~~~~W~~~~~~p------------------~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~d~~~~~~   90 (301)
T 2vpj_A           31 DVVEKYDPKTQEWSFLPSIT------------------RKRRYVASVSL--HDRIYVIGGYDGRSRLSSVECLDYTADED   90 (301)
T ss_dssp             CCEEEEETTTTEEEECCCCS------------------SCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTCCTT
T ss_pred             eEEEEEcCCCCeEEeCCCCC------------------hhhccccEEEE--CCEEEEEcCCCCCccCceEEEEECCCCCC
Confidence            36899999998888764211                  11112344444  5678876321      349999999888 


Q ss_pred             --EEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEeecCCCC--cc
Q 019290          129 --AQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSF--PN  204 (343)
Q Consensus       129 --~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~--~~  204 (343)
                        ++.+......   ..-..++..  ++.+|+.-....            ......+++||+.+.+.+.+......  ..
T Consensus        91 ~~W~~~~~~p~~---r~~~~~~~~--~~~lyv~GG~~~------------~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~  153 (301)
T 2vpj_A           91 GVWYSVAPMNVR---RGLAGATTL--GDMIYVSGGFDG------------SRRHTSMERYDPNIDQWSMLGDMQTAREGA  153 (301)
T ss_dssp             CCCEEECCCSSC---CBSCEEEEE--TTEEEEECCBCS------------SCBCCEEEEEETTTTEEEEEEECSSCCBSC
T ss_pred             CeeEECCCCCCC---ccceeEEEE--CCEEEEEcccCC------------CcccceEEEEcCCCCeEEECCCCCCCcccc
Confidence              7776443322   122334443  378888532210            01134699999998887765422111  12


Q ss_pred             eeEEecCCCEEEEEEc-----CCCeEEEEEccCccccccceeeecCCCCCC---ceeeCCCCCEEEEeccCCCccccccc
Q 019290          205 GVALSNNNSFLLLAES-----ATLKILRFWLQGERTTYTPQLFAEMPRFPD---NIKSDSKGEFWIAMNSARGKIESNKK  276 (343)
Q Consensus       205 ~i~~~~d~~~lyv~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~---~i~~d~~G~lwi~~~~~~~~~~~~~~  276 (343)
                      ..++. + +.+|+..-     ....+++|++..    .+...+...+. +.   .++. -+++||+.........     
T Consensus       154 ~~~~~-~-~~iyv~GG~~~~~~~~~~~~~d~~~----~~W~~~~~~p~-~r~~~~~~~-~~~~i~v~GG~~~~~~-----  220 (301)
T 2vpj_A          154 GLVVA-S-GVIYCLGGYDGLNILNSVEKYDPHT----GHWTNVTPMAT-KRSGAGVAL-LNDHIYVVGGFDGTAH-----  220 (301)
T ss_dssp             EEEEE-T-TEEEEECCBCSSCBCCCEEEEETTT----TEEEEECCCSS-CCBSCEEEE-ETTEEEEECCBCSSSB-----
T ss_pred             eEEEE-C-CEEEEECCCCCCcccceEEEEeCCC----CcEEeCCCCCc-ccccceEEE-ECCEEEEEeCCCCCcc-----
Confidence            23332 3 45777632     135689999765    23333322221 11   1222 2577888754322211     


Q ss_pred             cccccccCCCcccCCCeEEEECCCCCEEEEee-CCCCCccCCceeEEEeCCEEEEecCCC-----CeEEEEcC
Q 019290          277 TAFCEETAKPWFLRDPVGVKFDVNGNVVDVLD-GNEGNTLNSVSEVQEYGEYLYTGSSVQ-----PYVVVIKA  343 (343)
Q Consensus       277 ~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~-~~~~~~~~~~~~~~~~~g~l~i~~~~~-----~~i~~~~~  343 (343)
                                    ...+.+||++...-..+. .|..   .....+...+++||+.+-..     +.+.+|++
T Consensus       221 --------------~~~v~~yd~~~~~W~~~~~~p~~---r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~  276 (301)
T 2vpj_A          221 --------------LSSVEAYNIRTDSWTTVTSMTTP---RCYVGATVLRGRLYAIAGYDGNSLLSSIECYDP  276 (301)
T ss_dssp             --------------CCCEEEEETTTTEEEEECCCSSC---CBSCEEEEETTEEEEECCBCSSSBEEEEEEEET
T ss_pred             --------------cceEEEEeCCCCcEEECCCCCCc---ccceeEEEECCEEEEEcCcCCCcccccEEEEcC
Confidence                          247889998755444433 2222   12223334488888655432     45677763

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=97.53  E-value=0.036  Score=47.70  Aligned_cols=191  Identities=8%  Similarity=-0.049  Sum_probs=99.7

Q ss_pred             eEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCCCe
Q 019290           39 SLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFG  118 (343)
Q Consensus        39 ~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~~g  118 (343)
                      ..+...++..+.++..++.+..++..+........                  .........+.+.+.+..+..+.....
T Consensus       112 ~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~l~s~~~d~~  173 (318)
T 4ggc_A          112 VGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATL------------------SGHSQEVCGLRWAPDGRHLASGGNDNL  173 (318)
T ss_dssp             EEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEE------------------ECCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             EEEeecCCCEEEEEecCCceEeeecCCCceeEEEE------------------cCccCceEEEEEcCCCCEEEEEecCcc
Confidence            34444455555556666666666554432211110                  111223456777773444555543334


Q ss_pred             EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEE-EEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEee
Q 019290          119 LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVY-FTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMY  197 (343)
Q Consensus       119 i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~-v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~  197 (343)
                      |..+|.++++...............+..++..+.+..+. ++..+                ..+.|..+|..........
T Consensus       174 i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~----------------~~~~i~lwd~~~~~~~~~~  237 (318)
T 4ggc_A          174 VNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGT----------------SDRHIRIWNVCSGACLSAV  237 (318)
T ss_dssp             EEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECT----------------TTCEEEEEETTTCCEEEEE
T ss_pred             eeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecC----------------CCCEEEEEecccccccccc
Confidence            888898776432111111111113355566665323333 32221                1455777787766555444


Q ss_pred             cCCCCcceeEEecCCCEEEEEE-cCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEecc
Q 019290          198 NGLSFPNGVALSNNNSFLLLAE-SATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNS  266 (343)
Q Consensus       198 ~~~~~~~~i~~~~d~~~lyv~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~~  266 (343)
                      ........+++.++++.++.+. ..++.|..|++.....   ...+..-.+....+++.++|++.++...
T Consensus       238 ~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~---~~~l~gH~~~V~~l~~spdg~~l~S~s~  304 (318)
T 4ggc_A          238 DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAK---VAELKGHTSRVLSLTMSPDGATVASAAA  304 (318)
T ss_dssp             ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCE---EEEECCCSSCEEEEEECTTSSCEEEEET
T ss_pred             cceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcE---EEEEcCCCCCEEEEEEcCCCCEEEEEec
Confidence            4445567788889888777653 4578999999864221   1222111122345678999987776544

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=97.51  E-value=0.0031  Score=59.83  Aligned_cols=193  Identities=8%  Similarity=-0.097  Sum_probs=107.5

Q ss_pred             CCceEEEcCC------CCeeEEEecCCEEEEEEcCCCCeE---EeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCC
Q 019290           36 GPESLAFDCN------GEGPYVGVSDGRILKWKAANSGWT---EFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPV  106 (343)
Q Consensus        36 ~p~~l~~d~~------g~~l~~~~~~g~i~~~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~  106 (343)
                      ...++++.|+      +.++.++..++.|..||..++...   .+....  +.         .........+..+++.+ 
T Consensus       209 ~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~--p~---------~~l~~h~~~v~sv~~s~-  276 (524)
T 2j04_B          209 EVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEK--PS---------LTLSLADSLITTFDFLS-  276 (524)
T ss_dssp             SEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCS--CS---------EEECCTTTCEEEEEESS-
T ss_pred             cEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecC--ce---------EEEEcCCCCEEEEEecC-
Confidence            3567888876      566777888999999998654311   000000  00         00111223467888887 


Q ss_pred             CCeEEEEeCCCeEEEEeCCCCeEE-EcccccCCCCccCccee--EEeCCCC-eEEEEeCCcccccccceeeeeecCCCce
Q 019290          107 TCDLYIADAYFGLMVVGPNGGQAQ-QLASSAGGIPFRFTNDL--DIDPNTG-IVYFTDSSIYFQRRQYFMSIATGDRSGR  182 (343)
Q Consensus       107 ~~~l~v~~~~~gi~~~d~~~~~~~-~~~~~~~~~~~~~~~~i--~~d~~dg-~l~v~~~~~~~~~~~~~~~~~~~~~~~~  182 (343)
                      ++.|..+.....|..+|.+++... ......    ...+.++  +..+ +| .+.++...                 .+.
T Consensus       277 ~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H----~~~V~sv~~~~s~-~g~~~laS~S~-----------------D~t  334 (524)
T 2j04_B          277 PTTVVCGFKNGFVAEFDLTDPEVPSFYDQVH----DSYILSVSTAYSD-FEDTVVSTVAV-----------------DGY  334 (524)
T ss_dssp             SSEEEEEETTSEEEEEETTBCSSCSEEEECS----SSCEEEEEEECCT-TSCCEEEEEET-----------------TSE
T ss_pred             CCeEEEEeCCCEEEEEECCCCCCceEEeecc----cccEEEEEEEcCC-CCCeEEEEecc-----------------CCe
Confidence            667777754344889999865311 111111    1346777  3455 46 67665543                 456


Q ss_pred             EEEEeCCCCceE-EeecCC--CCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCC
Q 019290          183 LLKYDPLKKNVT-VMYNGL--SFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGE  259 (343)
Q Consensus       183 v~~~d~~~~~~~-~~~~~~--~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~  259 (343)
                      |..+|..+++.. .+....  .....++++|+++. +++....+.|..|++....   ....+..-.+....+++.++|+
T Consensus       335 vklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~-l~s~~~d~tv~lwd~~~~~---~~~~l~gH~~~V~sva~Sp~g~  410 (524)
T 2j04_B          335 FYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYS-YIYSDGASSLRAVPSRAAF---AVHPLVSRETTITAIGVSRLHP  410 (524)
T ss_dssp             EEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTE-EEEECSSSEEEEEETTCTT---CCEEEEECSSCEEEEECCSSCC
T ss_pred             EEEEECCCCCcccccccccccCcccceEeCCCcCe-EEEeCCCCcEEEEECcccc---cceeeecCCCceEEEEeCCCCC
Confidence            778887644321 122111  12467999999885 5555667889999876421   1122222222244567778887


Q ss_pred             EEEEecc
Q 019290          260 FWIAMNS  266 (343)
Q Consensus       260 lwi~~~~  266 (343)
                      +.++...
T Consensus       411 ~l~Sgs~  417 (524)
T 2j04_B          411 MVLAGSA  417 (524)
T ss_dssp             BCEEEET
T ss_pred             eEEEEEC
Confidence            6555443

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=97.47  E-value=0.011  Score=56.12  Aligned_cols=147  Identities=10%  Similarity=-0.057  Sum_probs=81.2

Q ss_pred             CeeeEEEeCC-----CCeEEEEeCCCe-EEEEeCCCCeEE---E--ccc---ccCCCCccCcceeEEeCCCCeEEEEeCC
Q 019290           97 RPLGIKFNPV-----TCDLYIADAYFG-LMVVGPNGGQAQ---Q--LAS---SAGGIPFRFTNDLDIDPNTGIVYFTDSS  162 (343)
Q Consensus        97 ~p~gi~~~~~-----~~~l~v~~~~~g-i~~~d~~~~~~~---~--~~~---~~~~~~~~~~~~i~~d~~dg~l~v~~~~  162 (343)
                      .+..+++.+.     ++.++++...+| |..+|..+++..   .  ...   ...+ ....+..+++.+ ++.|..+.. 
T Consensus       209 ~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~-h~~~v~sv~~s~-~~~lasgs~-  285 (524)
T 2j04_B          209 EVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSL-ADSLITTFDFLS-PTTVVCGFK-  285 (524)
T ss_dssp             SEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECC-TTTCEEEEEESS-SSEEEEEET-
T ss_pred             cEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEc-CCCCEEEEEecC-CCeEEEEeC-
Confidence            4677888873     134444334455 888888755311   0  000   0011 113467788877 465544332 


Q ss_pred             cccccccceeeeeecCCCceEEEEeCCCCce--EEeecCCCCccee--EEecCCCEEEEEEcCCCeEEEEEccCcccccc
Q 019290          163 IYFQRRQYFMSIATGDRSGRLLKYDPLKKNV--TVMYNGLSFPNGV--ALSNNNSFLLLAESATLKILRFWLQGERTTYT  238 (343)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~--~~~~~~~~~~~~i--~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~  238 (343)
                                       .+.|..+|..++..  ..+...-.....+  ++.+++..+.++.+.++.|..||+.....   
T Consensus       286 -----------------DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~---  345 (524)
T 2j04_B          286 -----------------NGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIAT---  345 (524)
T ss_dssp             -----------------TSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHH---
T ss_pred             -----------------CCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCc---
Confidence                             46788888875432  2233333445666  45666634667777889999999864221   


Q ss_pred             ceeeec-CC-CCCCceeeCCCCCEEEEecc
Q 019290          239 PQLFAE-MP-RFPDNIKSDSKGEFWIAMNS  266 (343)
Q Consensus       239 ~~~~~~-~~-~~p~~i~~d~~G~lwi~~~~  266 (343)
                      ...+.. .. +....+++.++|..+++...
T Consensus       346 ~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~  375 (524)
T 2j04_B          346 TKTTVSRFRGSNLVPVVYCPQIYSYIYSDG  375 (524)
T ss_dssp             HCEEEEECSCCSCCCEEEETTTTEEEEECS
T ss_pred             ccccccccccCcccceEeCCCcCeEEEeCC
Confidence            112211 11 11346788888888777654

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.39  E-value=0.062  Score=51.52  Aligned_cols=39  Identities=18%  Similarity=0.139  Sum_probs=26.2

Q ss_pred             CeEEEECC-CCCEEEEeeCCCCCccCCceeEEEeCCEEEEec
Q 019290          292 PVGVKFDV-NGNVVDVLDGNEGNTLNSVSEVQEYGEYLYTGS  332 (343)
Q Consensus       292 ~~v~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~  332 (343)
                      +.++.+|. +|+++-.+..+.+.....++.  +.+|++||+.
T Consensus       507 g~l~A~D~~tG~~lW~~~~~~g~~a~P~~y--~~~G~qYv~~  546 (582)
T 1flg_A          507 GYFKAFDAKSGKELWKFQTGSGIVSPPITW--EQDGEQYLGV  546 (582)
T ss_dssp             SEEEEEETTTCCEEEEEECSSCCCSCCEEE--EETTEEEEEE
T ss_pred             CcEEEEECCCCCEEEEecCCCCcccCceEE--EECCEEEEEE
Confidence            57889997 699988887765532222222  3488988874

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=97.36  E-value=0.037  Score=49.96  Aligned_cols=190  Identities=10%  Similarity=0.036  Sum_probs=97.3

Q ss_pred             CceEEEcC--------CCCeeEEEecCCEEEEEEcCCCCe-EEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCC
Q 019290           37 PESLAFDC--------NGEGPYVGVSDGRILKWKAANSGW-TEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVT  107 (343)
Q Consensus        37 p~~l~~d~--------~g~~l~~~~~~g~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~  107 (343)
                      ..++++.+        +|+++.++..++.|..||..++.. ....                    .....+..++++|.+
T Consensus       139 v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~--------------------~~~~~v~~v~~~p~~  198 (393)
T 4gq1_A          139 VNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGY--------------------PLSSPGISVQFRPSN  198 (393)
T ss_dssp             EEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEE--------------------ECSSCEEEEEEETTE
T ss_pred             eEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeec--------------------CCCCCcEEEEECCCC
Confidence            56888876        788777888999999999865432 2221                    111245689999844


Q ss_pred             Ce-EEEEeCCCeEEEEeCCCCeEEEccccc---------------------CCCCccCcceeEEeCCCCeEEEEeCCccc
Q 019290          108 CD-LYIADAYFGLMVVGPNGGQAQQLASSA---------------------GGIPFRFTNDLDIDPNTGIVYFTDSSIYF  165 (343)
Q Consensus       108 ~~-l~v~~~~~gi~~~d~~~~~~~~~~~~~---------------------~~~~~~~~~~i~~d~~dg~l~v~~~~~~~  165 (343)
                      .+ |..+....-|..+|..+++........                     .......+..+.+.+.|+...++...   
T Consensus       199 ~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~---  275 (393)
T 4gq1_A          199 PNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCK---  275 (393)
T ss_dssp             EEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECT---
T ss_pred             CceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeC---
Confidence            44 444433334888998876532211000                     00011234455554224555554332   


Q ss_pred             ccccceeeeeecCCCceEEEEeCCCCceEE-e------------------ecCCCCcceeEEec-CCCEEEEEEcCCCeE
Q 019290          166 QRRQYFMSIATGDRSGRLLKYDPLKKNVTV-M------------------YNGLSFPNGVALSN-NNSFLLLAESATLKI  225 (343)
Q Consensus       166 ~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~-~------------------~~~~~~~~~i~~~~-d~~~lyv~~~~~~~i  225 (343)
                                    .+.+..+|...+.... +                  ........+.++.+ .++.+.++...++.|
T Consensus       276 --------------d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V  341 (393)
T 4gq1_A          276 --------------SGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLI  341 (393)
T ss_dssp             --------------TSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEE
T ss_pred             --------------CCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEE
Confidence                          3345555543322110 0                  00111122333443 344455667778999


Q ss_pred             EEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEecc
Q 019290          226 LRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNS  266 (343)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~~  266 (343)
                      ..|+......   .............++++++|+++.+...
T Consensus       342 ~lwd~~~~~~---~~~~~~~~~~V~svafspdG~~LA~as~  379 (393)
T 4gq1_A          342 QLINTYEKDS---NSIPIQLGMPIVDFCWHQDGSHLAIATE  379 (393)
T ss_dssp             EEEETTCTTC---CEEEEECSSCEEEEEECTTSSEEEEEES
T ss_pred             EEEECCCCcE---EEEecCCCCcEEEEEEcCCCCEEEEEeC
Confidence            9999875322   1222222222456889999988776654

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.35  E-value=0.07  Score=46.98  Aligned_cols=230  Identities=12%  Similarity=0.032  Sum_probs=120.7

Q ss_pred             CceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCC
Q 019290           37 PESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAY  116 (343)
Q Consensus        37 p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~  116 (343)
                      ..+|++++ ++ +|+....+.|++-...+..|+.+....                 ...+.+..+...+ ++.+|++...
T Consensus        82 ~~~i~~~~-~~-~~~~g~~g~i~~S~DgG~tW~~~~~~~-----------------~~~~~~~~i~~~~-~~~~~~~~~~  141 (327)
T 2xbg_A           82 FNSVSFQG-NE-GWIVGEPPIMLHTTDGGQSWSQIPLDP-----------------KLPGSPRLIKALG-NGSAEMITNV  141 (327)
T ss_dssp             EEEEEEET-TE-EEEEEETTEEEEESSTTSSCEECCCCT-----------------TCSSCEEEEEEEE-TTEEEEEETT
T ss_pred             EEEEEecC-Ce-EEEEECCCeEEEECCCCCCceECcccc-----------------CCCCCeEEEEEEC-CCCEEEEeCC
Confidence            35777775 44 676666788888655566777653210                 0112356677765 6788887544


Q ss_pred             CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCC-CCceEE
Q 019290          117 FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPL-KKNVTV  195 (343)
Q Consensus       117 ~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~-~~~~~~  195 (343)
                      .+|++-+-....++.+....    ...+..+++++ ++.+|+...                  .+.+++-... +...+.
T Consensus       142 g~v~~S~DgG~tW~~~~~~~----~~~~~~~~~~~-~~~~~~~g~------------------~G~~~~S~d~gG~tW~~  198 (327)
T 2xbg_A          142 GAIYRTKDSGKNWQALVQEA----IGVMRNLNRSP-SGEYVAVSS------------------RGSFYSTWEPGQTAWEP  198 (327)
T ss_dssp             CCEEEESSTTSSEEEEECSC----CCCEEEEEECT-TSCEEEEET------------------TSSEEEEECTTCSSCEE
T ss_pred             ccEEEEcCCCCCCEEeecCC----CcceEEEEEcC-CCcEEEEEC------------------CCcEEEEeCCCCCceeE
Confidence            44766543334465543211    12467788888 588887443                  3457776433 233443


Q ss_pred             eecC-CCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCC-----CceeeCCCCCEEEEeccCCC
Q 019290          196 MYNG-LSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFP-----DNIKSDSKGEFWIAMNSARG  269 (343)
Q Consensus       196 ~~~~-~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p-----~~i~~d~~G~lwi~~~~~~~  269 (343)
                      +... ......+++++++. +|+... .+.+++.+.++.   .....+. .+.++     ..++.++++++|++...   
T Consensus       199 ~~~~~~~~~~~~~~~~~g~-~~~~~~-~G~~~~s~~D~G---~tW~~~~-~~~~~~~~~~~~v~~~~~~~~~~~g~~---  269 (327)
T 2xbg_A          199 HNRTTSRRLHNMGFTPDGR-LWMIVN-GGKIAFSDPDNS---ENWGELL-SPLRRNSVGFLDLAYRTPNEVWLAGGA---  269 (327)
T ss_dssp             EECCSSSCEEEEEECTTSC-EEEEET-TTEEEEEETTEE---EEECCCB-CTTSSCCSCEEEEEESSSSCEEEEEST---
T ss_pred             CCCCCCCccceeEECCCCC-EEEEeC-CceEEEecCCCC---CeeEecc-CCcccCCcceEEEEecCCCEEEEEeCC---
Confidence            3221 23345677777765 666543 566766543321   1111111 11011     23456778899998765   


Q ss_pred             ccccccccccccccCCCcccCCCeEEEECCCCCEEEEeeCCCCCccCCceeEE-EeCCEEEEecCCCCeEEEEc
Q 019290          270 KIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEGNTLNSVSEVQ-EYGEYLYTGSSVQPYVVVIK  342 (343)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~~~~~~~~~~~~-~~~g~l~i~~~~~~~i~~~~  342 (343)
                                            +.+++-...|+.-.....+... ...+..+. ..++++|+.+.. ..|++++
T Consensus       270 ----------------------g~i~~S~DgG~tW~~~~~~~~~-~~~~~~v~~~~~~~~~~~G~~-G~i~~~~  319 (327)
T 2xbg_A          270 ----------------------GALLCSQDGGQTWQQDVDVKKV-PSNFYKILFFSPDQGFILGQK-GILLRYV  319 (327)
T ss_dssp             ----------------------TCEEEESSTTSSCEECGGGTTS-SSCCCEEEEEETTEEEEECST-TEEEEEC
T ss_pred             ----------------------CeEEEeCCCCcccEEcCccCCC-CCCeEEEEEECCCceEEEcCC-ceEEEEc
Confidence                                  2455443345544433322111 11233332 357788877654 3677765

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=97.33  E-value=0.11  Score=51.28  Aligned_cols=166  Identities=7%  Similarity=-0.060  Sum_probs=87.4

Q ss_pred             CCCCeeEEEe-c----CCEEEEEEcC---CCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           44 CNGEGPYVGV-S----DGRILKWKAA---NSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        44 ~~g~~l~~~~-~----~g~i~~~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      ++|+.+|... .    ...|++.+..   +++...+.......             ........++.+++++..|.++..
T Consensus       116 pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~-------------~~~~~~~~~~~~SPDG~~la~~~~  182 (741)
T 1yr2_A          116 RRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWA-------------KDGATALDAWAASDDGRLLAYSVQ  182 (741)
T ss_dssp             EETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC-----------------EEEEEEEECTTSSEEEEEEE
T ss_pred             EECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhc-------------cCCCEEEEeEEECCCCCEEEEEEc
Confidence            7788555432 2    2467888765   55555443211000             000012456888884455555432


Q ss_pred             --CC---eEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCC
Q 019290          116 --YF---GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLK  190 (343)
Q Consensus       116 --~~---gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~  190 (343)
                        +.   .|+.+|.++++......  ..   ....++++.+ |..|+++.......    ............|++++..+
T Consensus       183 ~~G~e~~~i~v~dl~tg~~~~~~~--~~---~~~~~~~wsp-D~~l~~~~~~~~~~----~~~~~~~~~~~~v~~~~lgt  252 (741)
T 1yr2_A          183 DGGSDWRTVKFVGVADGKPLADEL--KW---VKFSGLAWLG-NDALLYSRFAEPKE----GQAFQALNYNQTVWLHRLGT  252 (741)
T ss_dssp             ETTCSEEEEEEEETTTCCEEEEEE--EE---EESCCCEEST-TSEEEEEECCCC------------CCCCCEEEEEETTS
T ss_pred             CCCCceEEEEEEECCCCCCCCccC--CC---ceeccEEEEC-CCEEEEEEecCccc----ccccccCCCCCEEEEEECCC
Confidence              22   49999999987654311  01   1134678888 46777765321000    00000001133588888766


Q ss_pred             Cce--EEeecCCC---CcceeEEecCCCEEEEEEcC----CCeEEEEEccC
Q 019290          191 KNV--TVMYNGLS---FPNGVALSNNNSFLLLAESA----TLKILRFWLQG  232 (343)
Q Consensus       191 ~~~--~~~~~~~~---~~~~i~~~~d~~~lyv~~~~----~~~i~~~~~~~  232 (343)
                      +..  ..+.....   ...+..+++||+.|+++...    ...|+.+++++
T Consensus       253 ~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~  303 (741)
T 1yr2_A          253 PQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTN  303 (741)
T ss_dssp             CGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEET
T ss_pred             CchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCC
Confidence            542  22222211   24578899999988776532    45899999876

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=97.22  E-value=0.00037  Score=63.01  Aligned_cols=140  Identities=14%  Similarity=0.108  Sum_probs=57.9

Q ss_pred             CCCeeEEEecCCEEEEEEcCCCCeE-EeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCCCe-EEEE
Q 019290           45 NGEGPYVGVSDGRILKWKAANSGWT-EFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFG-LMVV  122 (343)
Q Consensus        45 ~g~~l~~~~~~g~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~~g-i~~~  122 (343)
                      ++..+|++..++.|+.+|..+++.. .+..                      .......+.. ++.+|++...+| |+.+
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~----------------------~~~~s~p~~~-~g~~~v~~s~dg~l~a~   64 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE----------------------DPVLQVPTHV-EEPAFLPDPNDGSLYTL   64 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC----------------------CCSCCCC------CCEEECTTTCCEEEC
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC----------------------CCceecceEc-CCCEEEEeCCCCEEEEE
Confidence            3555899989999999998887643 2211                      0011111223 456666633444 9999


Q ss_pred             eCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEeecCCCC
Q 019290          123 GPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSF  202 (343)
Q Consensus       123 d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~  202 (343)
                      |.++|+...........  ......++.. ++.+|++..                  .+.|+.+|.++|+...-...   
T Consensus        65 d~~tG~~~w~~~~~~~~--~~~~sp~~~~-~~~v~~g~~------------------dg~v~a~D~~tG~~~w~~~~---  120 (369)
T 2hz6_A           65 GSKNNEGLTKLPFTIPE--LVQASPCRSS-DGILYMGKK------------------QDIWYVIDLLTGEKQQTLSS---  120 (369)
T ss_dssp             -----CCSEECSCCHHH--HHTTCSCC------CCCCEE------------------EEEEEEECCC-------------
T ss_pred             ECCCCceeeeeeccCcc--ccccCceEec-CCEEEEEeC------------------CCEEEEEECCCCcEEEEecC---
Confidence            99877643221111000  0001112223 366766332                  45699999887775422111   


Q ss_pred             cceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290          203 PNGVALSNNNSFLLLAESATLKILRFWLQG  232 (343)
Q Consensus       203 ~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~  232 (343)
                      .......++++.+|+.. .++.|+.++..+
T Consensus       121 ~~~~~~~p~~~~v~~~~-~dg~v~a~d~~t  149 (369)
T 2hz6_A          121 AFADSLSPSTSLLYLGR-TEYTITMYDTKT  149 (369)
T ss_dssp             ------------EEEEE-EEEEEECCCSSS
T ss_pred             CCcccccccCCEEEEEe-cCCEEEEEECCC
Confidence            11223345667777764 357888888764

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.19  E-value=0.013  Score=48.46  Aligned_cols=117  Identities=18%  Similarity=0.118  Sum_probs=67.6

Q ss_pred             ccccCCCCCCCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCC
Q 019290           27 QQLQLPGVVGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPV  106 (343)
Q Consensus        27 ~~~~~~~~~~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~  106 (343)
                      .++..++..+..+++++|+|. ||+. .+|.||+.++.+..-.....+.      ...|.      ..-..=..+.+++ 
T Consensus        33 ~~iG~~gw~~~~~laf~P~G~-LYaV-~~G~Ly~~~~~t~~~~~W~~s~------t~IG~------~Gw~~F~a~~fD~-   97 (236)
T 1tl2_A           33 TLIGKGGWSNFKFLFLSPGGE-LYGV-LNDKIYKGTPPTHDNDNWMGRA------KKIGN------GGWNQFQFLFFDP-   97 (236)
T ss_dssp             EEEESSSCTTCSEEEECTTSC-EEEE-ETTEEEEESCCCSTTCCHHHHC------EEEEC------SCGGGCSEEEECT-
T ss_pred             cccCccccccceeEEECCCcc-EEEE-eCCeEEEECCCCCCcccccccc------cEecc------cccccceEEEECC-
Confidence            344444566788999999999 8866 8889999998652211110000      00000      0000013577887 


Q ss_pred             CCeEEEEeCCCeEEEEeCCC-CeEEEcccc-c-CCCCccCcceeEEeCCCCeEEEEe
Q 019290          107 TCDLYIADAYFGLMVVGPNG-GQAQQLASS-A-GGIPFRFTNDLDIDPNTGIVYFTD  160 (343)
Q Consensus       107 ~~~l~v~~~~~gi~~~d~~~-~~~~~~~~~-~-~~~~~~~~~~i~~d~~dg~l~v~~  160 (343)
                      ++.||.+. ...|+++++-+ +.-..+... . ....-.....|.+++ +|.||..+
T Consensus        98 ~G~LYav~-dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p-~G~Lyav~  152 (236)
T 1tl2_A           98 NGYLYAVS-KDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHP-NGYLYAVH  152 (236)
T ss_dssp             TSCEEEEE-TTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECT-TSCEEEEE
T ss_pred             CCCEEEeC-CCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECC-CceEEEEe
Confidence            99999994 44599998733 222222110 0 000112357889999 59999977

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=97.19  E-value=0.2  Score=48.94  Aligned_cols=155  Identities=13%  Similarity=0.030  Sum_probs=85.6

Q ss_pred             ceEEEcCCCCeeEEEecCC-------------EEEEEEcCCCCe--EEeeecCCCccccccCCCCCcccCCCcCCeeeEE
Q 019290           38 ESLAFDCNGEGPYVGVSDG-------------RILKWKAANSGW--TEFATTAPHRAREICDGSTNTTLEPLCGRPLGIK  102 (343)
Q Consensus        38 ~~l~~d~~g~~l~~~~~~g-------------~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~  102 (343)
                      .++++.+||+.+++...+.             .|++++..++..  ..+...                 ........++.
T Consensus       171 ~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~-----------------~~~~~~~~~~~  233 (695)
T 2bkl_A          171 ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHER-----------------TGDPTTFLQSD  233 (695)
T ss_dssp             CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECC-----------------CCCTTCEEEEE
T ss_pred             cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEec-----------------CCCCEEEEEEE
Confidence            6899999999666554433             399998876542  122110                 01112345778


Q ss_pred             EeCCCCeEEEEeCCC----eEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecC
Q 019290          103 FNPVTCDLYIADAYF----GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGD  178 (343)
Q Consensus       103 ~~~~~~~l~v~~~~~----gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~  178 (343)
                      +++++..|.++....    .|+.++..+++.+.+.....     .....+. + +|.+|+....              ..
T Consensus       234 ~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~-----~~~~~~~-~-~g~l~~~s~~--------------~~  292 (695)
T 2bkl_A          234 LSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVG-----AKYEVHA-W-KDRFYVLTDE--------------GA  292 (695)
T ss_dssp             ECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSS-----CCEEEEE-E-TTEEEEEECT--------------TC
T ss_pred             ECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCC-----ceEEEEe-c-CCcEEEEECC--------------CC
Confidence            888555666653222    58888877676666543211     1222222 4 2447775432              11


Q ss_pred             CCceEEEEeCCCCc---eEEeecCC--CCcceeEEecCCCEEEEEEcCC--CeEEEEEccC
Q 019290          179 RSGRLLKYDPLKKN---VTVMYNGL--SFPNGVALSNNNSFLLLAESAT--LKILRFWLQG  232 (343)
Q Consensus       179 ~~~~v~~~d~~~~~---~~~~~~~~--~~~~~i~~~~d~~~lyv~~~~~--~~i~~~~~~~  232 (343)
                      ....|+++|.+++.   .+.+....  ....+++++  ++.++++...+  .+|+++++++
T Consensus       293 ~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g  351 (695)
T 2bkl_A          293 PRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV--GGHLSLEYLKDATSEVRVATLKG  351 (695)
T ss_dssp             TTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE--TTEEEEEEEETTEEEEEEEETTC
T ss_pred             CCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCCC
Confidence            25679999987665   24444322  224556666  34566665443  4566666544

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=97.18  E-value=0.0071  Score=55.78  Aligned_cols=166  Identities=6%  Similarity=-0.087  Sum_probs=90.2

Q ss_pred             eeeEEEeCCCCeEEEEeCCCeEEEEeCCC-----------CeEEEcccccCCCCccCcceeEEeCCCCeEEE----EeCC
Q 019290           98 PLGIKFNPVTCDLYIADAYFGLMVVGPNG-----------GQAQQLASSAGGIPFRFTNDLDIDPNTGIVYF----TDSS  162 (343)
Q Consensus        98 p~gi~~~~~~~~l~v~~~~~gi~~~d~~~-----------~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v----~~~~  162 (343)
                      .+-+++++..+.++++. .+++..++...           ...........-.....+..+++++ +|+..+    +...
T Consensus        39 ~n~lavs~~~~~l~~~~-~dgv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp-dg~~lav~~~sgs~  116 (434)
T 2oit_A           39 SSLLAVSNKYGLVFAGG-ASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSC-DNLTLSACMMSSEY  116 (434)
T ss_dssp             CBCEEEETTTTEEEEEE-TTEEEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECT-TSCEEEEEEEETTT
T ss_pred             ccEEEEecCCCEEEEEC-CCEEEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcC-CCCEEEEEEeccCC
Confidence            45688888566777764 56766654321           0111110000000012478899999 476555    2222


Q ss_pred             cccccccceeeeeecCCCceEEEEeCCCC-----c-------eEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEc
Q 019290          163 IYFQRRQYFMSIATGDRSGRLLKYDPLKK-----N-------VTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWL  230 (343)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~v~~~d~~~~-----~-------~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~  230 (343)
                                       .+.|..||..++     +       ...+.........++++|+...++++...++.|..||+
T Consensus       117 -----------------d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~  179 (434)
T 2oit_A          117 -----------------GSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQV  179 (434)
T ss_dssp             -----------------EEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEE
T ss_pred             -----------------CceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEc
Confidence                             345667765432     1       11111123457889999984446666667899999998


Q ss_pred             cCccccccceeeecCCCCCCceeeCCCCCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECCCCCEEEEeeC
Q 019290          231 QGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDG  309 (343)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~  309 (343)
                      .....   .............++.+++|+..++...                        .+.|..+|.+++....+..
T Consensus       180 ~~~~~---~~~~~~~~~~v~~v~wspdg~~lasgs~------------------------dg~v~iwd~~~~~~~~~~~  231 (434)
T 2oit_A          180 TETVK---VCATLPSTVAVTSVCWSPKGKQLAVGKQ------------------------NGTVVQYLPTLQEKKVIPC  231 (434)
T ss_dssp             SSSEE---EEEEECGGGCEEEEEECTTSSCEEEEET------------------------TSCEEEECTTCCEEEEECC
T ss_pred             CCCcc---eeeccCCCCceeEEEEcCCCCEEEEEcC------------------------CCcEEEEccCCcccccccC
Confidence            75311   1111111223456788999866555444                        3467778887666555543

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=97.18  E-value=0.1  Score=45.47  Aligned_cols=213  Identities=14%  Similarity=0.102  Sum_probs=108.1

Q ss_pred             CEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCC------------CeEEEEe
Q 019290           56 GRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAY------------FGLMVVG  123 (343)
Q Consensus        56 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~------------~gi~~~d  123 (343)
                      ..++.||+.+.+|.......                 +....-+.++..  ++.||+....            +.++++|
T Consensus        24 ~~~~~yd~~~~~W~~~~~~~-----------------~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~~~d   84 (318)
T 2woz_A           24 TAAVAYDPMENECYLTALAE-----------------QIPRNHSSIVTQ--QNQVYVVGGLYVDEENKDQPLQSYFFQLD   84 (318)
T ss_dssp             SEEEEEETTTTEEEEEEECT-----------------TSCSSEEEEECS--SSCEEEEESSCC-------CCCBEEEEEE
T ss_pred             cceEEECCCCCceecccCCc-----------------cCCccceEEEEE--CCEEEEECCcccCccccCCCccccEEEEe
Confidence            35899999998887632110                 011112233332  5777775331            1178999


Q ss_pred             CCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEeecCCCC-
Q 019290          124 PNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSF-  202 (343)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-  202 (343)
                      +.+.+++.+......   ..-+.++...  +.+|+.-....          ........+++||+.+.+.+.+...... 
T Consensus        85 ~~~~~W~~~~~~p~~---r~~~~~~~~~--~~iyv~GG~~~----------~~~~~~~~~~~yd~~~~~W~~~~~~p~~r  149 (318)
T 2woz_A           85 NVSSEWVGLPPLPSA---RCLFGLGEVD--DKIYVVAGKDL----------QTEASLDSVLCYDPVAAKWSEVKNLPIKV  149 (318)
T ss_dssp             TTTTEEEECSCBSSC---BCSCEEEEET--TEEEEEEEEBT----------TTCCEEEEEEEEETTTTEEEEECCCSSCE
T ss_pred             CCCCcEEECCCCCcc---ccccceEEEC--CEEEEEcCccC----------CCCcccceEEEEeCCCCCEeECCCCCCcc
Confidence            999998887543322   1223444443  78888432100          0001124699999998888765421111 


Q ss_pred             -cceeEEecCCCEEEEEEcC------CCeEEEEEccCccccccceeeecCCCCCC---ceeeCCCCCEEEEeccCCCccc
Q 019290          203 -PNGVALSNNNSFLLLAESA------TLKILRFWLQGERTTYTPQLFAEMPRFPD---NIKSDSKGEFWIAMNSARGKIE  272 (343)
Q Consensus       203 -~~~i~~~~d~~~lyv~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~~p~---~i~~d~~G~lwi~~~~~~~~~~  272 (343)
                       ....+. .+ +.+|+..-.      .+.+++||+..    .+...+...+. +.   .+++ -+++||+......... 
T Consensus       150 ~~~~~~~-~~-~~iyv~GG~~~~~~~~~~~~~yd~~~----~~W~~~~~~p~-~r~~~~~~~-~~~~iyv~GG~~~~~~-  220 (318)
T 2woz_A          150 YGHNVIS-HN-GMIYCLGGKTDDKKCTNRVFIYNPKK----GDWKDLAPMKT-PRSMFGVAI-HKGKIVIAGGVTEDGL-  220 (318)
T ss_dssp             ESCEEEE-ET-TEEEEECCEESSSCBCCCEEEEETTT----TEEEEECCCSS-CCBSCEEEE-ETTEEEEEEEEETTEE-
T ss_pred             cccEEEE-EC-CEEEEEcCCCCCCCccceEEEEcCCC----CEEEECCCCCC-CcccceEEE-ECCEEEEEcCcCCCCc-
Confidence             122223 23 457775321      34689999765    22233322221 21   2222 3578888753211111 


Q ss_pred             cccccccccccCCCcccCCCeEEEECCCCCEEEEee-CCCCCccCCceeEEEeCCEEEEec
Q 019290          273 SNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLD-GNEGNTLNSVSEVQEYGEYLYTGS  332 (343)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~-~~~~~~~~~~~~~~~~~g~l~i~~  332 (343)
                                        ...+.+||++.+.-..+. .|..   .....+...+++||+-+
T Consensus       221 ------------------~~~~~~yd~~~~~W~~~~~~p~~---r~~~~~~~~~~~i~v~G  260 (318)
T 2woz_A          221 ------------------SASVEAFDLKTNKWEVMTEFPQE---RSSISLVSLAGSLYAIG  260 (318)
T ss_dssp             ------------------EEEEEEEETTTCCEEECCCCSSC---CBSCEEEEETTEEEEEC
T ss_pred             ------------------cceEEEEECCCCeEEECCCCCCc---ccceEEEEECCEEEEEC
Confidence                              136788998654433332 2222   12223444588988653

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.14  E-value=0.099  Score=50.25  Aligned_cols=125  Identities=10%  Similarity=0.012  Sum_probs=64.9

Q ss_pred             CCeeEEEec-CCEEEEEEc-CCCCeE-EeeecCCCc-cccccCCCCCcccCCCcCCeeeEEEeCCCCe----EEEEeCCC
Q 019290           46 GEGPYVGVS-DGRILKWKA-ANSGWT-EFATTAPHR-AREICDGSTNTTLEPLCGRPLGIKFNPVTCD----LYIADAYF  117 (343)
Q Consensus        46 g~~l~~~~~-~g~i~~~d~-~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~----l~v~~~~~  117 (343)
                      +..+|+... ++.|+.+|. .+++.. .+....... ....|        ..  ....++++.+.++.    ||+++...
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~--------~~--~~~~g~av~p~~g~~~~rV~v~t~dg  131 (599)
T 1w6s_A           62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVAC--------CD--LVNRGLAYWPGDGKTPALILKTQLDG  131 (599)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCS--------SC--SCCCCCEEECCCSSSCCEEEEECTTS
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCcccccccc--------cc--ccccceEEEecCCcceeEEEEEcCCC
Confidence            344888777 788999999 776532 221100000 00000        00  01235666322455    99996555


Q ss_pred             eEEEEeCCCCeEEEcccccCCCC-ccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceE
Q 019290          118 GLMVVGPNGGQAQQLASSAGGIP-FRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVT  194 (343)
Q Consensus       118 gi~~~d~~~~~~~~~~~~~~~~~-~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~  194 (343)
                      .|+.+|.++|+...-........ ......-++.  +|.+|++.....+            ...+.|+.+|.++|+..
T Consensus       132 ~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~--~g~V~vg~~g~e~------------g~~g~v~A~D~~TG~~~  195 (599)
T 1w6s_A          132 NVAALNAETGETVWKVENSDIKVGSTLTIAPYVV--KDKVIIGSSGAEL------------GVRGYLTAYDVKTGEQV  195 (599)
T ss_dssp             EEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE--TTEEEECCBCGGG------------TCCCEEEEEETTTCCEE
T ss_pred             EEEEEECCCCCEEEeecCCCCCccceeecCCEEE--CCEEEEEeccccc------------CCCCeEEEEECCCCcEE
Confidence            69999999998765432211000 0111222333  3788886542110            11457888888877754

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=97.10  E-value=0.12  Score=50.65  Aligned_cols=81  Identities=16%  Similarity=0.286  Sum_probs=46.5

Q ss_pred             ceEEEEeCCCCceEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCC--CCCCceeeCCCC
Q 019290          181 GRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMP--RFPDNIKSDSKG  258 (343)
Q Consensus       181 ~~v~~~d~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--~~p~~i~~d~~G  258 (343)
                      +.|..+|+.+++..--........+-.+...+..+|+. +.++.|+.||..+...+-   .+ ..+  ....-+....+|
T Consensus       455 g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g-t~dg~l~a~D~~tG~~lw---~~-~~~~~~~~~p~ty~~~G  529 (689)
T 1yiq_A          455 GKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEG-SADGRVIAYAADTGEKLW---EQ-PAASGVMAAPVTYSVDG  529 (689)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEE-CTTSEEEEEETTTCCEEE---EE-ECSSCCCSCCEEEEETT
T ss_pred             eeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEE-CCCCcEEEEECCCCccce---ee-eCCCCcccCceEEEECC
Confidence            67999999988865322211222333455566666665 678999999976522111   11 111  111224555689


Q ss_pred             CEEEEecc
Q 019290          259 EFWIAMNS  266 (343)
Q Consensus       259 ~lwi~~~~  266 (343)
                      +.||+...
T Consensus       530 ~qyv~~~~  537 (689)
T 1yiq_A          530 EQYVTFMA  537 (689)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEe
Confidence            99988654

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.05  E-value=0.12  Score=50.46  Aligned_cols=83  Identities=16%  Similarity=0.222  Sum_probs=45.8

Q ss_pred             ceEEEEeCCCCceEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCE
Q 019290          181 GRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEF  260 (343)
Q Consensus       181 ~~v~~~d~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l  260 (343)
                      +.|+.+|+.+++..--........+..+...++.+|+. +.++.|+.++......+-+.+.  .......-+....+|++
T Consensus       438 g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g-~~dg~l~a~d~~tG~~l~~~~~--~~~~~~~p~~~~~~G~~  514 (668)
T 1kv9_A          438 GALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQG-TAAGQMHAYSADKGEALWQFEA--QSGIVAAPMTFELAGRQ  514 (668)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEE-CTTSEEEEEETTTCCEEEEEEC--SSCCCSCCEEEEETTEE
T ss_pred             ceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEE-CCcccchhhhhhcChhheEecC--CCCcccCceEEEECCEE
Confidence            77999999988864322222223444444567777776 5689999999764221111111  00101122333457888


Q ss_pred             EEEecc
Q 019290          261 WIAMNS  266 (343)
Q Consensus       261 wi~~~~  266 (343)
                      |++...
T Consensus       515 yva~~~  520 (668)
T 1kv9_A          515 YVAIMA  520 (668)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            887554

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.02  E-value=0.018  Score=47.60  Aligned_cols=143  Identities=14%  Similarity=0.025  Sum_probs=82.4

Q ss_pred             CeeeEEEeCCCCeEEEEeCCCeEEEEeCCCCeEEEcccccC---CCCccCcceeEEeCCCCeEEEEeCCcccccccceee
Q 019290           97 RPLGIKFNPVTCDLYIADAYFGLMVVGPNGGQAQQLASSAG---GIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMS  173 (343)
Q Consensus        97 ~p~gi~~~~~~~~l~v~~~~~gi~~~d~~~~~~~~~~~~~~---~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~  173 (343)
                      ....+++++ ++.||.+ ....|+++++.+++-..+.....   ...-.....+.+|+ +|.||++.             
T Consensus        42 ~~~~laf~P-~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~-~G~LYav~-------------  105 (236)
T 1tl2_A           42 NFKFLFLSP-GGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDP-NGYLYAVS-------------  105 (236)
T ss_dssp             TCSEEEECT-TSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECT-TSCEEEEE-------------
T ss_pred             cceeEEECC-CccEEEE-eCCeEEEECCCCCCcccccccccEecccccccceEEEECC-CCCEEEeC-------------
Confidence            456899999 9999998 44569999986643333321100   00112356789999 59999973             


Q ss_pred             eeecCCCceEEEEeCCC-Cce------EEeec-CCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccc---cccceee
Q 019290          174 IATGDRSGRLLKYDPLK-KNV------TVMYN-GLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERT---TYTPQLF  242 (343)
Q Consensus       174 ~~~~~~~~~v~~~d~~~-~~~------~~~~~-~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~---~~~~~~~  242 (343)
                            .+.|+|+++.+ +.-      ..+-. +-.....+.++|+|. ||...  ++.+++........   +.....+
T Consensus       106 ------dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~-Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~  176 (236)
T 1tl2_A          106 ------KDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGY-LYAVH--GQQFYKALPPVSNQDNWLARATKI  176 (236)
T ss_dssp             ------TTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSC-EEEEE--TTEEEEECCCSSTTCCHHHHCEEE
T ss_pred             ------CCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCce-EEEEe--CCcEEecCCCCCCCccccccccee
Confidence                  46899998743 111      11111 223457788889885 88876  56787744321110   0111111


Q ss_pred             ec-CCCCCCceeeCCCCCEEEEe
Q 019290          243 AE-MPRFPDNIKSDSKGEFWIAM  264 (343)
Q Consensus       243 ~~-~~~~p~~i~~d~~G~lwi~~  264 (343)
                      .. ....-.-+.++++|+||.++
T Consensus       177 g~~g~~~yr~l~f~~~G~l~~v~  199 (236)
T 1tl2_A          177 GQGGWDTFKFLFFSSVGTLFGVQ  199 (236)
T ss_dssp             ESSSGGGEEEEEECTTSCEEEEE
T ss_pred             ccCCcceEEEEEECCCCcEEEEe
Confidence            10 00001125688999999998

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=96.98  E-value=0.31  Score=47.61  Aligned_cols=113  Identities=13%  Similarity=0.124  Sum_probs=65.2

Q ss_pred             eeeEEEeCCCCeEEEEeC---C-CeEEEEeCCCC--eEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccce
Q 019290           98 PLGIKFNPVTCDLYIADA---Y-FGLMVVGPNGG--QAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYF  171 (343)
Q Consensus        98 p~gi~~~~~~~~l~v~~~---~-~gi~~~d~~~~--~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~  171 (343)
                      ..++.+++++..|++...   . +.++.+|.+++  +++.+.....     ..... +++.++.+|+....         
T Consensus       236 ~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~-----~~~~~-~~~~g~~l~~~t~~---------  300 (693)
T 3iuj_A          236 YVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLD-----ADVSL-VDNKGSTLYLLTNR---------  300 (693)
T ss_dssp             EEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSS-----SCEEE-EEEETTEEEEEECT---------
T ss_pred             EEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCC-----ceEEE-EeccCCEEEEEECC---------
Confidence            346778884555655532   1 36899998765  4554432211     11121 33323678876543         


Q ss_pred             eeeeecCCCceEEEEeCCCCce---EEeecCCCCcceeEEecCCCEEEEEEcCCC--eEEEEEccC
Q 019290          172 MSIATGDRSGRLLKYDPLKKNV---TVMYNGLSFPNGVALSNNNSFLLLAESATL--KILRFWLQG  232 (343)
Q Consensus       172 ~~~~~~~~~~~v~~~d~~~~~~---~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~--~i~~~~~~~  232 (343)
                           .....+|++++.+++..   +.+........  .++++++.|+++...++  +|+++++++
T Consensus       301 -----~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g  359 (693)
T 3iuj_A          301 -----DAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEG  359 (693)
T ss_dssp             -----TCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTS
T ss_pred             -----CCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCC
Confidence                 11246799999876553   44443322222  77888888887765443  688888775

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=96.93  E-value=0.0078  Score=55.98  Aligned_cols=135  Identities=13%  Similarity=0.162  Sum_probs=76.9

Q ss_pred             cCcceeEEeCCCC--eEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCce----EE----eecC-----CCCccee
Q 019290          142 RFTNDLDIDPNTG--IVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNV----TV----MYNG-----LSFPNGV  206 (343)
Q Consensus       142 ~~~~~i~~d~~dg--~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~----~~----~~~~-----~~~~~~i  206 (343)
                      ..|..|++.+ ||  +|||++.                  .++|++++.++...    ..    +..+     ....-++
T Consensus        14 ~~P~~~a~~p-dG~~rl~V~er------------------~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgi   74 (463)
T 2wg3_C           14 RQPVGALHSG-DGSQRLFILEK------------------EGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSL   74 (463)
T ss_dssp             SSEEEEECCS-SSSCCEEEEET------------------TTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEE
T ss_pred             CCceEEEECC-CCCeEEEEEeC------------------CceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceee
Confidence            5678999999 57  5999875                  46788887653311    11    1111     2345789


Q ss_pred             EEecC---CCEEEEEEcCC------------CeEEEEEccCc--cc--cccceeeecCC----C-CCCceeeCCCCCEEE
Q 019290          207 ALSNN---NSFLLLAESAT------------LKILRFWLQGE--RT--TYTPQLFAEMP----R-FPDNIKSDSKGEFWI  262 (343)
Q Consensus       207 ~~~~d---~~~lyv~~~~~------------~~i~~~~~~~~--~~--~~~~~~~~~~~----~-~p~~i~~d~~G~lwi  262 (343)
                      +++|+   .+.+|++.+..            .+|.+|.+...  ..  ..+.+++...+    . ....|++++||+|||
T Consensus        75 a~~P~f~~n~~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv  154 (463)
T 2wg3_C           75 AFHPNYKKNGKLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYI  154 (463)
T ss_dssp             EECTTHHHHCEEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEE
T ss_pred             EeCCCCcCCCEEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEE
Confidence            99986   45688875421            37888987632  11  12223333211    1 123388999999999


Q ss_pred             EeccCCCccccccccccccccCCCcccCCCeEEEECCCCC
Q 019290          263 AMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGN  302 (343)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~  302 (343)
                      +....+.......       .........+.|+|++++|+
T Consensus       155 ~~Gd~~~~~~~~~-------~~q~~~~~~GkIlRi~~dg~  187 (463)
T 2wg3_C          155 ILGDGMITLDDME-------EMDGLSDFTGSVLRLDVDTD  187 (463)
T ss_dssp             EECCTTCCHHHHH-------HCTTCCSCTTEEEEEBCCCC
T ss_pred             EeCCCCCCCCccc-------cccCcCCCCeeEEEEECCCC
Confidence            9876322110000       00000122578999999884

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=96.91  E-value=0.18  Score=44.72  Aligned_cols=154  Identities=17%  Similarity=0.070  Sum_probs=84.5

Q ss_pred             ceEEEcC---CCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEe
Q 019290           38 ESLAFDC---NGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIAD  114 (343)
Q Consensus        38 ~~l~~d~---~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~  114 (343)
                      ..+++.+   ++..+..+..++.|..||.++++.........                ........+++++ ++.+.++.
T Consensus       182 ~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~----------------~~v~~v~~vafSp-dG~~lvs~  244 (356)
T 2w18_A          182 TILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDD----------------SYQASVCHKAYSE-MGLLFIVL  244 (356)
T ss_dssp             CEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC-------------------CCCEEEEEEE-TTEEEEEE
T ss_pred             eeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCC----------------cceeeeEEEEECC-CCCEEEEe
Confidence            4556666   66767777899999999999876433221000                0111244567887 56554321


Q ss_pred             C------------CCe-EEEEeCCCCeEEEccc--ccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCC
Q 019290          115 A------------YFG-LMVVGPNGGQAQQLAS--SAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDR  179 (343)
Q Consensus       115 ~------------~~g-i~~~d~~~~~~~~~~~--~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~  179 (343)
                      .            ..+ +..+|+++++......  ...+....   -+..+. ++.+.++-.                 .
T Consensus       245 s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~---~lsg~~-sg~~lASgS-----------------~  303 (356)
T 2w18_A          245 SHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGR---FLEGDV-KDHCAAAIL-----------------T  303 (356)
T ss_dssp             C------------CCEEEEEEETTTTEEEEEEEECCCTTCCCC---EEEEEE-ETTEEEEEE-----------------T
T ss_pred             ccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcce---eEcccc-CCCEEEEEc-----------------C
Confidence            1            123 6677888876533211  01111101   111222 133334322                 1


Q ss_pred             CceEEEEeCCCCceEEeec-CCCCcc-eeEEecCCCEEEEEEcCCCeEEEEEc
Q 019290          180 SGRLLKYDPLKKNVTVMYN-GLSFPN-GVALSNNNSFLLLAESATLKILRFWL  230 (343)
Q Consensus       180 ~~~v~~~d~~~~~~~~~~~-~~~~~~-~i~~~~d~~~lyv~~~~~~~i~~~~~  230 (343)
                      .+.|..+|..+++...... ...... .++|+|||+.|+ +.+.++.|..|++
T Consensus       304 DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~La-SGS~D~TIklWd~  355 (356)
T 2w18_A          304 SGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLL-AGQKDGNIFVYHY  355 (356)
T ss_dssp             TSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEE-EECTTSCEEEEEE
T ss_pred             CCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEE-EEECCCcEEEecC
Confidence            4568889998887654333 223334 579999998655 5567899999874

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=96.83  E-value=0.016  Score=55.32  Aligned_cols=121  Identities=15%  Similarity=0.229  Sum_probs=78.3

Q ss_pred             CcCCeeeEEEeCCCCeEEEEeCC---------------------Ce-EEEEeCCCCe-----EE--Ecccc---------
Q 019290           94 LCGRPLGIKFNPVTCDLYIADAY---------------------FG-LMVVGPNGGQ-----AQ--QLASS---------  135 (343)
Q Consensus        94 ~~~~p~gi~~~~~~~~l~v~~~~---------------------~g-i~~~d~~~~~-----~~--~~~~~---------  135 (343)
                      .+.+|.++.+++.++.+|++.+.                     .| |++++++.+.     ++  .+...         
T Consensus       382 ~f~RpEgi~~~p~~g~vY~a~Tn~~~rg~~~~~~~~~np~~~n~~G~I~r~~~~~~d~~a~~f~w~~~v~~g~p~~~~~~  461 (592)
T 3zwu_A          382 RMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAGT  461 (592)
T ss_dssp             CEECEEEEEECTTTCCEEEEECCBTTTTSTTCCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTTS
T ss_pred             EEeccceeEEcCCCCEEEEEecCCcccccCcccccccccccCCcceeEEEEecCCCccccceeEEEEEEeccCccccccc
Confidence            35578999999878899998542                     13 8888764331     11  11100         


Q ss_pred             --------cCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEeecCC--CCcce
Q 019290          136 --------AGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGL--SFPNG  205 (343)
Q Consensus       136 --------~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~--~~~~~  205 (343)
                              .....+..|..|++|+ .|+|||.+.+......++     .......++.+++.++++.++....  ....|
T Consensus       462 ~~~~~~~~~~~~~f~~PDNL~fd~-~G~LwI~eDg~~~~~~~~-----~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG  535 (592)
T 3zwu_A          462 PKGGSSNITPQNMFNSPDGLGFDK-AGRLWILTDGDSSNAGDF-----AGMGNNQMLCADPATGEIRRFMVGPIGCEVTG  535 (592)
T ss_dssp             GGGCCTTCCTTTCCCCEEEEEECT-TCCEEEEECCCCCCSGGG-----TTTCSCEEEEECTTTCCEEEEEECCTTCEEEE
T ss_pred             ccccccccCCCCCccCCcceEECC-CCCEEEEecCCCcccccc-----cccccceEEEEeCCCCeEEEEEeCCCCccCcC
Confidence                    0112356788999999 599999986532111000     0112456888999889988876443  45689


Q ss_pred             eEEecCCCEEEEEEc
Q 019290          206 VALSNNNSFLLLAES  220 (343)
Q Consensus       206 i~~~~d~~~lyv~~~  220 (343)
                      ++|+||+++||+.-.
T Consensus       536 ~~fspDg~tlfvniQ  550 (592)
T 3zwu_A          536 ISFSPDQKTLFVGIQ  550 (592)
T ss_dssp             EEECTTSSEEEEEEE
T ss_pred             eeECCCCCEEEEEEE
Confidence            999999999988644

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.81  E-value=0.15  Score=44.34  Aligned_cols=194  Identities=10%  Similarity=0.029  Sum_probs=93.3

Q ss_pred             eEEEEeCCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeC
Q 019290          109 DLYIADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDP  188 (343)
Q Consensus       109 ~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~  188 (343)
                      .||+- .+..++.+|+.+++++. .....  +.......++-. ++.+|+.-....      ............+++||+
T Consensus         6 ~l~~~-GG~~~~~yd~~~~~W~~-~~~~~--p~~r~~~~~~~~-~~~iyv~GG~~~------~~~~~~~~~~~~~~~~d~   74 (315)
T 4asc_A            6 LIFMI-SEEGAVAYDPAANECYC-ASLSS--QVPKNHVSLVTK-ENQVFVAGGLFY------NEDNKEDPMSAYFLQFDH   74 (315)
T ss_dssp             EEEEE-ETTEEEEEETTTTEEEE-EECCC--CSCSSEEEEECT-TCCEEEEEEEEE------CSSCSSSCEEEEEEEEET
T ss_pred             EEEEE-cCCceEEECCCCCeEec-CCCCC--CCCccceEEEEE-CCEEEEEcCccc------CCCCCccccccceEEecC
Confidence            44544 24679999999998875 22211  111122223333 478887332000      000000000234899999


Q ss_pred             CCCceEEeecCCCCc---ceeEEecCCCEEEEEEc--------CCCeEEEEEccCccccccceeeecCCCCCC--ceeeC
Q 019290          189 LKKNVTVMYNGLSFP---NGVALSNNNSFLLLAES--------ATLKILRFWLQGERTTYTPQLFAEMPRFPD--NIKSD  255 (343)
Q Consensus       189 ~~~~~~~~~~~~~~~---~~i~~~~d~~~lyv~~~--------~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~--~i~~d  255 (343)
                      .+++.+.+.. +..+   .+++..  ++.+|+..-        ..+.+++|++..    .+.+.....+. +.  .-++-
T Consensus        75 ~~~~W~~~~~-~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~----~~W~~~~~~p~-~r~~~~~~~  146 (315)
T 4asc_A           75 LDSEWLGMPP-LPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLS----FKWGESDPLPY-VVYGHTVLS  146 (315)
T ss_dssp             TTTEEEECCC-BSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTT----TEEEECCCCSS-CCBSCEEEE
T ss_pred             CCCeEEECCC-CCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCC----CcEeECCCCCC-cccceeEEE
Confidence            9888776532 2221   223332  346777632        125688998765    22223222221 11  11222


Q ss_pred             CCCCEEEEecc-CCCccccccccccccccCCCcccCCCeEEEECCCCCEEEEee-CCCCCccCCceeEEEeCCEEEEec-
Q 019290          256 SKGEFWIAMNS-ARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLD-GNEGNTLNSVSEVQEYGEYLYTGS-  332 (343)
Q Consensus       256 ~~G~lwi~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~-~~~~~~~~~~~~~~~~~g~l~i~~-  332 (343)
                      -+++||+.... .....                   ...+.+||+....-.... .|..   .....+...+++||+-+ 
T Consensus       147 ~~~~iyv~GG~~~~~~~-------------------~~~~~~yd~~~~~W~~~~~~p~~---r~~~~~~~~~~~iyv~GG  204 (315)
T 4asc_A          147 HMDLVYVIGGKGSDRKC-------------------LNKMCVYDPKKFEWKELAPMQTA---RSLFGATVHDGRIIVAAG  204 (315)
T ss_dssp             ETTEEEEECCBCTTSCB-------------------CCCEEEEETTTTEEEECCCCSSC---CBSCEEEEETTEEEEEEE
T ss_pred             ECCEEEEEeCCCCCCcc-------------------cceEEEEeCCCCeEEECCCCCCc---hhceEEEEECCEEEEEec
Confidence            45778887543 11111                   347889998655433332 2222   22233344488888644 


Q ss_pred             CCC----CeEEEEcC
Q 019290          333 SVQ----PYVVVIKA  343 (343)
Q Consensus       333 ~~~----~~i~~~~~  343 (343)
                      ...    +.+.+|++
T Consensus       205 ~~~~~~~~~~~~yd~  219 (315)
T 4asc_A          205 VTDTGLTSSAEVYSI  219 (315)
T ss_dssp             ECSSSEEEEEEEEET
T ss_pred             cCCCCccceEEEEEC
Confidence            322    35666653

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=96.66  E-value=0.49  Score=45.25  Aligned_cols=82  Identities=13%  Similarity=0.160  Sum_probs=45.2

Q ss_pred             CceEEEEeCCCCceEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCC--CCCceeeCCC
Q 019290          180 SGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPR--FPDNIKSDSK  257 (343)
Q Consensus       180 ~~~v~~~d~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~p~~i~~d~~  257 (343)
                      .+.|+.+|+.+++..--........+-.+...++.+|+. +.++.|+.+|..+...+-+   + +.+.  ...-++...+
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g-~~dg~l~A~D~~tG~~lW~---~-~~~~g~~a~P~~y~~~  539 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTG-TGDGYFKAFDAKSGKELWK---F-QTGSGIVSPPITWEQD  539 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEE-CTTSEEEEEETTTCCEEEE---E-ECSSCCCSCCEEEEET
T ss_pred             cceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEE-CCCCcEEEEECCCCCEEEE---e-cCCCCcccCceEEEEC
Confidence            577999999988764211111112222222345666664 5678999999764221111   1 1221  1122555578


Q ss_pred             CCEEEEecc
Q 019290          258 GEFWIAMNS  266 (343)
Q Consensus       258 G~lwi~~~~  266 (343)
                      |+.||+...
T Consensus       540 G~qYv~~~~  548 (582)
T 1flg_A          540 GEQYLGVTV  548 (582)
T ss_dssp             TEEEEEEEE
T ss_pred             CEEEEEEEc
Confidence            999998765

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=96.56  E-value=0.32  Score=41.82  Aligned_cols=191  Identities=11%  Similarity=0.073  Sum_probs=102.0

Q ss_pred             CEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCC------CeEEEEeCCCCeE
Q 019290           56 GRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAY------FGLMVVGPNGGQA  129 (343)
Q Consensus        56 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~------~gi~~~d~~~~~~  129 (343)
                      ..+++||+.+.+|..+...+                  .....++++..  ++.||+....      +.++++|+.+.++
T Consensus        77 ~~~~~~d~~~~~W~~~~~~p------------------~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W  136 (302)
T 2xn4_A           77 RTVDSYDPVKDQWTSVANMR------------------DRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEW  136 (302)
T ss_dssp             CCEEEEETTTTEEEEECCCS------------------SCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEE
T ss_pred             cceEEECCCCCceeeCCCCC------------------ccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeE
Confidence            35899999999998874211                  11112445554  5677775321      2488999999998


Q ss_pred             EEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEeecCCCC--cceeE
Q 019290          130 QQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSF--PNGVA  207 (343)
Q Consensus       130 ~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~--~~~i~  207 (343)
                      +.+......   ..-..+++.  ++.||+.......          .......+++||+.+.+.+.+......  ....+
T Consensus       137 ~~~~~~p~~---r~~~~~~~~--~~~iyv~GG~~~~----------~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~  201 (302)
T 2xn4_A          137 FHVAPMNTR---RSSVGVGVV--GGLLYAVGGYDVA----------SRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVG  201 (302)
T ss_dssp             EEECCCSSC---CBSCEEEEE--TTEEEEECCEETT----------TTEECCCEEEEETTTTEEEEECCCSSCCBSCEEE
T ss_pred             eecCCCCCc---ccCceEEEE--CCEEEEEeCCCCC----------CCccccEEEEEeCCCCcEEECCCCccccccccEE
Confidence            887543322   122334443  3789884321000          000134699999998887765322111  12233


Q ss_pred             EecCCCEEEEEEcC-----CCeEEEEEccCccccccceeeecCCC--CCCceeeCCCCCEEEEeccCCCccccccccccc
Q 019290          208 LSNNNSFLLLAESA-----TLKILRFWLQGERTTYTPQLFAEMPR--FPDNIKSDSKGEFWIAMNSARGKIESNKKTAFC  280 (343)
Q Consensus       208 ~~~d~~~lyv~~~~-----~~~i~~~~~~~~~~~~~~~~~~~~~~--~p~~i~~d~~G~lwi~~~~~~~~~~~~~~~~~~  280 (343)
                      .. + +.+|+..-.     .+.+++||+..    .....+...+.  .-..++. -+|+||+.....+...         
T Consensus       202 ~~-~-~~iyv~GG~~~~~~~~~~~~yd~~~----~~W~~~~~~~~~r~~~~~~~-~~~~i~v~GG~~~~~~---------  265 (302)
T 2xn4_A          202 VL-N-NLLYAVGGHDGPLVRKSVEVYDPTT----NAWRQVADMNMCRRNAGVCA-VNGLLYVVGGDDGSCN---------  265 (302)
T ss_dssp             EE-T-TEEEEECCBSSSSBCCCEEEEETTT----TEEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSB---------
T ss_pred             EE-C-CEEEEECCCCCCcccceEEEEeCCC----CCEeeCCCCCCccccCeEEE-ECCEEEEECCcCCCcc---------
Confidence            32 3 457776421     35799999765    22233322221  1112222 2677888754312111         


Q ss_pred             cccCCCcccCCCeEEEECCCCCEEEEe
Q 019290          281 EETAKPWFLRDPVGVKFDVNGNVVDVL  307 (343)
Q Consensus       281 ~~~~~~~~~~~~~v~~~d~~g~~~~~~  307 (343)
                                ...+.+||++...-..+
T Consensus       266 ----------~~~v~~yd~~~~~W~~~  282 (302)
T 2xn4_A          266 ----------LASVEYYNPTTDKWTVV  282 (302)
T ss_dssp             ----------CCCEEEEETTTTEEEEC
T ss_pred             ----------cccEEEEcCCCCeEEEC
Confidence                      24688999976654444

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=96.47  E-value=0.29  Score=42.53  Aligned_cols=194  Identities=10%  Similarity=0.027  Sum_probs=92.8

Q ss_pred             eEEEEeCCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeC
Q 019290          109 DLYIADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDP  188 (343)
Q Consensus       109 ~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~  188 (343)
                      .||+. .+..+..||+.++++... ......+ ..-+.+ +-. ++.+|+.-....-      ...........+++||+
T Consensus        17 ~i~~~-GG~~~~~yd~~~~~W~~~-~~~~~~~-r~~~~~-~~~-~~~lyv~GG~~~~------~~~~~~~~~~~~~~~d~   85 (318)
T 2woz_A           17 LILLV-NDTAAVAYDPMENECYLT-ALAEQIP-RNHSSI-VTQ-QNQVYVVGGLYVD------EENKDQPLQSYFFQLDN   85 (318)
T ss_dssp             EEEEE-CSSEEEEEETTTTEEEEE-EECTTSC-SSEEEE-ECS-SSCEEEEESSCC-------------CCCBEEEEEET
T ss_pred             hhhhc-cccceEEECCCCCceecc-cCCccCC-ccceEE-EEE-CCEEEEECCcccC------ccccCCCccccEEEEeC
Confidence            56665 356799999999988763 2211111 112233 334 4788874321000      00000000224899999


Q ss_pred             CCCceEEeecCCC--CcceeEEecCCCEEEEEEcC-------CCeEEEEEccCccccccceeeecCCC--CCCceeeCCC
Q 019290          189 LKKNVTVMYNGLS--FPNGVALSNNNSFLLLAESA-------TLKILRFWLQGERTTYTPQLFAEMPR--FPDNIKSDSK  257 (343)
Q Consensus       189 ~~~~~~~~~~~~~--~~~~i~~~~d~~~lyv~~~~-------~~~i~~~~~~~~~~~~~~~~~~~~~~--~p~~i~~d~~  257 (343)
                      .+++.+.+.....  ...+.+..  ++.+|+..-.       ...+++||+..    .+.+.+...+.  .-...+. -+
T Consensus        86 ~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~----~~W~~~~~~p~~r~~~~~~~-~~  158 (318)
T 2woz_A           86 VSSEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVA----AKWSEVKNLPIKVYGHNVIS-HN  158 (318)
T ss_dssp             TTTEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTT----TEEEEECCCSSCEESCEEEE-ET
T ss_pred             CCCcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCC----CCEeECCCCCCcccccEEEE-EC
Confidence            9888876532111  11233332  3457775321       14588888765    23333222221  0112233 46


Q ss_pred             CCEEEEeccC-CCccccccccccccccCCCcccCCCeEEEECCCCCEEEEee-CCCCCccCCceeEEEeCCEEEEecC-C
Q 019290          258 GEFWIAMNSA-RGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLD-GNEGNTLNSVSEVQEYGEYLYTGSS-V  334 (343)
Q Consensus       258 G~lwi~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~-~~~~~~~~~~~~~~~~~g~l~i~~~-~  334 (343)
                      |+||+..... ....                   ...+.+||+....-.... .|..   .....+...+++||+-+- .
T Consensus       159 ~~iyv~GG~~~~~~~-------------------~~~~~~yd~~~~~W~~~~~~p~~---r~~~~~~~~~~~iyv~GG~~  216 (318)
T 2woz_A          159 GMIYCLGGKTDDKKC-------------------TNRVFIYNPKKGDWKDLAPMKTP---RSMFGVAIHKGKIVIAGGVT  216 (318)
T ss_dssp             TEEEEECCEESSSCB-------------------CCCEEEEETTTTEEEEECCCSSC---CBSCEEEEETTEEEEEEEEE
T ss_pred             CEEEEEcCCCCCCCc-------------------cceEEEEcCCCCEEEECCCCCCC---cccceEEEECCEEEEEcCcC
Confidence            7888865321 1111                   247889998655433332 2222   122233445888886542 2


Q ss_pred             ----CCeEEEEc
Q 019290          335 ----QPYVVVIK  342 (343)
Q Consensus       335 ----~~~i~~~~  342 (343)
                          .+.+.+|+
T Consensus       217 ~~~~~~~~~~yd  228 (318)
T 2woz_A          217 EDGLSASVEAFD  228 (318)
T ss_dssp             TTEEEEEEEEEE
T ss_pred             CCCccceEEEEE
Confidence                23455555

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=96.20  E-value=0.57  Score=45.35  Aligned_cols=115  Identities=10%  Similarity=0.090  Sum_probs=69.3

Q ss_pred             eeeEEEeCCCCeEEEEeCC------------CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCccc
Q 019290           98 PLGIKFNPVTCDLYIADAY------------FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYF  165 (343)
Q Consensus        98 p~gi~~~~~~~~l~v~~~~------------~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~  165 (343)
                      +++.++.+.++.||+....            ..+.+||+.+++++.+...... ...+..++++.. +|+||+.-..   
T Consensus       188 ~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~-~~~~~~~~~~~~-~g~lyv~GG~---  262 (656)
T 1k3i_A          188 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTK-HDMFCPGISMDG-NGQIVVTGGN---  262 (656)
T ss_dssp             CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECS-CCCSSCEEEECT-TSCEEEECSS---
T ss_pred             ceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCC-CCCccccccCCC-CCCEEEeCCC---
Confidence            4566776546778776211            1378999999887765433221 123445667777 5899985432   


Q ss_pred             ccccceeeeeecCCCceEEEEeCCCCceEEeecCCCC---cceeEEecCCCEEEEEEc-C-----CCeEEEEEccC
Q 019290          166 QRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSF---PNGVALSNNNSFLLLAES-A-----TLKILRFWLQG  232 (343)
Q Consensus       166 ~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~---~~~i~~~~d~~~lyv~~~-~-----~~~i~~~~~~~  232 (343)
                                   ....+++||+.+++.+.+.. +..   ....++.++++ +|+..- .     ...+++||+..
T Consensus       263 -------------~~~~v~~yd~~t~~W~~~~~-~~~~R~~~s~~~~~dg~-iyv~GG~~~~~~~~~~~e~yd~~t  323 (656)
T 1k3i_A          263 -------------DAKKTSLYDSSSDSWIPGPD-MQVARGYQSSATMSDGR-VFTIGGSWSGGVFEKNGEVYSPSS  323 (656)
T ss_dssp             -------------STTCEEEEEGGGTEEEECCC-CSSCCSSCEEEECTTSC-EEEECCCCCSSSCCCCEEEEETTT
T ss_pred             -------------CCCceEEecCcCCceeECCC-CCccccccceEEecCCe-EEEEeCcccCCcccccceEeCCCC
Confidence                         12369999998887776532 221   22344555665 666542 1     15688999765

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=96.19  E-value=0.52  Score=40.38  Aligned_cols=137  Identities=16%  Similarity=0.152  Sum_probs=78.8

Q ss_pred             CEEEEEEcCCCC---eEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC------CCeEEEEeCCC
Q 019290           56 GRILKWKAANSG---WTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA------YFGLMVVGPNG  126 (343)
Q Consensus        56 g~i~~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~------~~gi~~~d~~~  126 (343)
                      ..+++||+.+..   |..+...+                  .....+.++..  ++.||+...      .+.++++|+.+
T Consensus        78 ~~~~~~d~~~~~~~~W~~~~~~p------------------~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~  137 (301)
T 2vpj_A           78 SSVECLDYTADEDGVWYSVAPMN------------------VRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNI  137 (301)
T ss_dssp             CCEEEEETTCCTTCCCEEECCCS------------------SCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTT
T ss_pred             ceEEEEECCCCCCCeeEECCCCC------------------CCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCC
Confidence            469999999888   88773211                  11112344444  578888732      13589999999


Q ss_pred             CeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEeecCCCCc---
Q 019290          127 GQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSFP---  203 (343)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~---  203 (343)
                      .+++.+......   ..-..+++.  ++.+|+......            ......+++||+.+.+.+.+.. +..+   
T Consensus       138 ~~W~~~~~~p~~---r~~~~~~~~--~~~iyv~GG~~~------------~~~~~~~~~~d~~~~~W~~~~~-~p~~r~~  199 (301)
T 2vpj_A          138 DQWSMLGDMQTA---REGAGLVVA--SGVIYCLGGYDG------------LNILNSVEKYDPHTGHWTNVTP-MATKRSG  199 (301)
T ss_dssp             TEEEEEEECSSC---CBSCEEEEE--TTEEEEECCBCS------------SCBCCCEEEEETTTTEEEEECC-CSSCCBS
T ss_pred             CeEEECCCCCCC---cccceEEEE--CCEEEEECCCCC------------CcccceEEEEeCCCCcEEeCCC-CCccccc
Confidence            988877543322   122333443  378888532100            0113569999999888876532 2211   


Q ss_pred             ceeEEecCCCEEEEEEcC-----CCeEEEEEccC
Q 019290          204 NGVALSNNNSFLLLAESA-----TLKILRFWLQG  232 (343)
Q Consensus       204 ~~i~~~~d~~~lyv~~~~-----~~~i~~~~~~~  232 (343)
                      ...+..  ++.+|+..-.     ...+++|++..
T Consensus       200 ~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~  231 (301)
T 2vpj_A          200 AGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRT  231 (301)
T ss_dssp             CEEEEE--TTEEEEECCBCSSSBCCCEEEEETTT
T ss_pred             ceEEEE--CCEEEEEeCCCCCcccceEEEEeCCC
Confidence            122222  3457776422     35789999765

>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*

Probab=96.19  E-value=1.2  Score=44.35  Aligned_cols=172  Identities=15%  Similarity=0.119  Sum_probs=94.5

Q ss_pred             cccccCCCCCCCceEEEcCC-CCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEe
Q 019290           26 YQQLQLPGVVGPESLAFDCN-GEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFN  104 (343)
Q Consensus        26 ~~~~~~~~~~~p~~l~~d~~-g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~  104 (343)
                      .+++.........+|++++. .+++|++...++|++-+..+..|..+..... .          .  .........|+++
T Consensus         6 W~~~~~~~~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~DgG~tW~~~~~~~~-~----------~--~~~~~~i~~ia~d   72 (789)
T 1sqj_A            6 FKNVAIGGGGYITGIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDFIE-A----------Q--DMNIMGTESIALD   72 (789)
T ss_dssp             EEECCCCBCSCEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCC-G----------G--GGGGCSEEEEEEE
T ss_pred             ceEccCCCCCcEEEEEECCCCCCEEEEEecCCCEEEecCCCCCeeECccCCC-c----------c--cccCCceeEEEEC
Confidence            45555543336788999985 4568998888899999888878877532110 0          0  0012245788898


Q ss_pred             CC-CCeEEEEeCC------CeEEEEeCCCCeEEEcccccC-C--CCc-cCcceeEEeCCC-CeEEEEeCCccccccccee
Q 019290          105 PV-TCDLYIADAY------FGLMVVGPNGGQAQQLASSAG-G--IPF-RFTNDLDIDPNT-GIVYFTDSSIYFQRRQYFM  172 (343)
Q Consensus       105 ~~-~~~l~v~~~~------~gi~~~d~~~~~~~~~~~~~~-~--~~~-~~~~~i~~d~~d-g~l~v~~~~~~~~~~~~~~  172 (343)
                      +. .+.+|++...      .+|++-+-.+..++.+..... .  .+. ..+..+++++.+ +.+|++..           
T Consensus        73 p~~~~~i~~~~g~~~~~~~~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~-----------  141 (789)
T 1sqj_A           73 PNNPDRLYLAQGRYVGDEWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTR-----------  141 (789)
T ss_dssp             TTEEEEEEEEECSCTTSSCCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECS-----------
T ss_pred             CCCCCEEEEEeCccCCCcccEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEec-----------
Confidence            73 2578888532      356665444445555432111 0  011 124578888732 46777542           


Q ss_pred             eeeecCCCceEEEEeCCCCceEEeecC------CCCcceeEEec-CCCEEEEEEcCCCeEEEE
Q 019290          173 SIATGDRSGRLLKYDPLKKNVTVMYNG------LSFPNGVALSN-NNSFLLLAESATLKILRF  228 (343)
Q Consensus       173 ~~~~~~~~~~v~~~d~~~~~~~~~~~~------~~~~~~i~~~~-d~~~lyv~~~~~~~i~~~  228 (343)
                             .++|++=+-.+...+.+...      ......+++++ +.+.+|+.....+.|++=
T Consensus       142 -------~~gl~~S~DgG~TW~~~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~v~~S  197 (789)
T 1sqj_A          142 -------TEGIWKSSDRAKTWTNVTSIPDAFTNGIGYTSVIFDPERNGTIYASATAPQGMYVT  197 (789)
T ss_dssp             -------SSCEEEESSTTSSCEEETTSCCCCSTTTCEEEEEECTTSTTCEEEEESSTTCEEEE
T ss_pred             -------cCCEEEECCCCcccCCCccCccccCCCCCeEEEEECCCCCCEEEEEEcCCCeEEEE
Confidence                   24577654333334443211      01234566666 345788875433667663

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=96.14  E-value=0.56  Score=40.30  Aligned_cols=189  Identities=9%  Similarity=0.082  Sum_probs=99.9

Q ss_pred             CEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCC-------CeEEEEeCCCCe
Q 019290           56 GRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAY-------FGLMVVGPNGGQ  128 (343)
Q Consensus        56 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~-------~gi~~~d~~~~~  128 (343)
                      ..+++||+.+.+|..+...+                  ....-+.++..  ++.||+....       +.++++|+.+.+
T Consensus        70 ~~~~~~d~~~~~W~~~~~~p------------------~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~  129 (306)
T 3ii7_A           70 KRMDCYNVVKDSWYSKLGPP------------------TPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTES  129 (306)
T ss_dssp             CEEEEEETTTTEEEEEECCS------------------SCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTE
T ss_pred             ceEEEEeCCCCeEEECCCCC------------------ccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCc
Confidence            57999999999888774211                  11112344444  5778876321       248999999998


Q ss_pred             EEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEeecCCCC--ccee
Q 019290          129 AQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSF--PNGV  206 (343)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~--~~~i  206 (343)
                      ++.+......   ..-+.++..  ++.+|+........        ........+++||+.+.+.+.+......  ....
T Consensus       130 W~~~~~~p~~---r~~~~~~~~--~~~iyv~GG~~~~~--------~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~  196 (306)
T 3ii7_A          130 WHTKPSMLTQ---RCSHGMVEA--NGLIYVCGGSLGNN--------VSGRVLNSCEVYDPATETWTELCPMIEARKNHGL  196 (306)
T ss_dssp             EEEECCCSSC---CBSCEEEEE--TTEEEEECCEESCT--------TTCEECCCEEEEETTTTEEEEECCCSSCCBSCEE
T ss_pred             eEeCCCCcCC---cceeEEEEE--CCEEEEECCCCCCC--------CcccccceEEEeCCCCCeEEECCCccchhhcceE
Confidence            8877543322   122333433  37898843210000        0000034699999998888765422111  1223


Q ss_pred             EEecCCCEEEEEEcC-----CCeEEEEEccCccccccceeeecCCC--CCCceeeCCCCCEEEEeccCCCcccccccccc
Q 019290          207 ALSNNNSFLLLAESA-----TLKILRFWLQGERTTYTPQLFAEMPR--FPDNIKSDSKGEFWIAMNSARGKIESNKKTAF  279 (343)
Q Consensus       207 ~~~~d~~~lyv~~~~-----~~~i~~~~~~~~~~~~~~~~~~~~~~--~p~~i~~d~~G~lwi~~~~~~~~~~~~~~~~~  279 (343)
                      ++.  ++.+|+..-.     ...+++||+..+    ....+...+.  .-...+.- +++||+.....+...        
T Consensus       197 ~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~----~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~--------  261 (306)
T 3ii7_A          197 VFV--KDKIFAVGGQNGLGGLDNVEYYDIKLN----EWKMVSPMPWKGVTVKCAAV-GSIVYVLAGFQGVGR--------  261 (306)
T ss_dssp             EEE--TTEEEEECCEETTEEBCCEEEEETTTT----EEEECCCCSCCBSCCEEEEE-TTEEEEEECBCSSSB--------
T ss_pred             EEE--CCEEEEEeCCCCCCCCceEEEeeCCCC----cEEECCCCCCCccceeEEEE-CCEEEEEeCcCCCee--------
Confidence            332  3457776311     256889997652    2223222221  11112222 677888754322211        


Q ss_pred             ccccCCCcccCCCeEEEECCCCCE
Q 019290          280 CEETAKPWFLRDPVGVKFDVNGNV  303 (343)
Q Consensus       280 ~~~~~~~~~~~~~~v~~~d~~g~~  303 (343)
                                 ...+.+||++.+.
T Consensus       262 -----------~~~~~~yd~~~~~  274 (306)
T 3ii7_A          262 -----------LGHILEYNTETDK  274 (306)
T ss_dssp             -----------CCEEEEEETTTTE
T ss_pred             -----------eeeEEEEcCCCCe
Confidence                       2478899986543

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=96.07  E-value=0.12  Score=49.42  Aligned_cols=126  Identities=18%  Similarity=0.335  Sum_probs=75.3

Q ss_pred             CCCCCceEEEcC-CCCeeEEEec---------------------CCEEEEEEcCCC-------CeEEeeecCC--Ccccc
Q 019290           33 GVVGPESLAFDC-NGEGPYVGVS---------------------DGRILKWKAANS-------GWTEFATTAP--HRARE   81 (343)
Q Consensus        33 ~~~~p~~l~~d~-~g~~l~~~~~---------------------~g~i~~~d~~~~-------~~~~~~~~~~--~~~~~   81 (343)
                      .+..||++.+++ +|.++++.++                     .|+|++|.+...       .|..+.....  .....
T Consensus       382 ~f~RpEgi~~~p~~g~vY~a~Tn~~~rg~~~~~~~~~np~~~n~~G~I~r~~~~~~d~~a~~f~w~~~v~~g~p~~~~~~  461 (592)
T 3zwu_A          382 RMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAGT  461 (592)
T ss_dssp             CEECEEEEEECTTTCCEEEEECCBTTTTSTTCCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTTS
T ss_pred             EEeccceeEEcCCCCEEEEEecCCcccccCcccccccccccCCcceeEEEEecCCCccccceeEEEEEEeccCccccccc
Confidence            455799999997 5774444332                     368999987532       1223322111  00000


Q ss_pred             ccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCC-------------CeEEEEeCCCCeEEEcccccCCCCccCcceeE
Q 019290           82 ICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAY-------------FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLD  148 (343)
Q Consensus        82 ~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~-------------~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~  148 (343)
                      ...+.........+..|-.|++++ .++|||+...             +.++.+++.++++++++....+   .-+.+++
T Consensus       462 ~~~~~~~~~~~~~f~~PDNL~fd~-~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~g---aE~TG~~  537 (592)
T 3zwu_A          462 PKGGSSNITPQNMFNSPDGLGFDK-AGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIG---CEVTGIS  537 (592)
T ss_dssp             GGGCCTTCCTTTCCCCEEEEEECT-TCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTT---CEEEEEE
T ss_pred             ccccccccCCCCCccCCcceEECC-CCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCC---ccCcCee
Confidence            000111111123466799999998 8899999643             2378889999999888655433   3467889


Q ss_pred             EeCCCCeEEEEeCC
Q 019290          149 IDPNTGIVYFTDSS  162 (343)
Q Consensus       149 ~d~~dg~l~v~~~~  162 (343)
                      +.++...||+.-++
T Consensus       538 fspDg~tlfvniQH  551 (592)
T 3zwu_A          538 FSPDQKTLFVGIQH  551 (592)
T ss_dssp             ECTTSSEEEEEEES
T ss_pred             ECCCCCEEEEEEEC
Confidence            99943457775554

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=95.98  E-value=0.76  Score=40.47  Aligned_cols=161  Identities=15%  Similarity=0.020  Sum_probs=82.4

Q ss_pred             CCCeeE-EE-ecCCEEEEEEcCC--CCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCC----
Q 019290           45 NGEGPY-VG-VSDGRILKWKAAN--SGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAY----  116 (343)
Q Consensus        45 ~g~~l~-~~-~~~g~i~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~----  116 (343)
                      ++. +| ++ .....+++||+.+  .+|..+...+                 .....-++++..  ++.||+....    
T Consensus        19 ~~~-iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p-----------------~~~R~~~~~~~~--~~~lyv~GG~~~~~   78 (357)
T 2uvk_A           19 NDT-VYIGLGSAGTAWYKLDTQAKDKKWTALAAFP-----------------GGPRDQATSAFI--DGNLYVFGGIGKNS   78 (357)
T ss_dssp             TTE-EEEECGGGTTCEEEEETTSSSCCEEECCCCT-----------------TCCCBSCEEEEE--TTEEEEECCEEECT
T ss_pred             CCE-EEEEeCcCCCeEEEEccccCCCCeeECCCCC-----------------CCcCccceEEEE--CCEEEEEcCCCCCC
Confidence            555 55 43 3445799999974  7787764211                 011112344444  5778875321    


Q ss_pred             -------CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccc-------------------
Q 019290          117 -------FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQY-------------------  170 (343)
Q Consensus       117 -------~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~-------------------  170 (343)
                             +.+++||+.+.+++.+......  ...-..++. - ++.||+.-..........                   
T Consensus        79 ~~~~~~~~~v~~yd~~~~~W~~~~~~~p~--~r~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (357)
T 2uvk_A           79 EGLTQVFNDVHKYNPKTNSWVKLMSHAPM--GMAGHVTFV-H-NGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINA  154 (357)
T ss_dssp             TSCEEECCCEEEEETTTTEEEECSCCCSS--CCSSEEEEE-E-TTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CccceeeccEEEEeCCCCcEEECCCCCCc--ccccceEEE-E-CCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhh
Confidence                   2389999999998887654311  122233444 4 478988543210000000                   


Q ss_pred             ---eeeeeecCCCceEEEEeCCCCceEEeecCCC-Cc--ceeEEecCCCEEEEEEc------CCCeEEEEEcc
Q 019290          171 ---FMSIATGDRSGRLLKYDPLKKNVTVMYNGLS-FP--NGVALSNNNSFLLLAES------ATLKILRFWLQ  231 (343)
Q Consensus       171 ---~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~--~~i~~~~d~~~lyv~~~------~~~~i~~~~~~  231 (343)
                         ............+++||+.+.+.+.+..... ..  .++++.  ++.+|+..-      ....+++|+++
T Consensus       155 ~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~~d~d  225 (357)
T 2uvk_A          155 HYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK--GDKTWLINGEAKPGLRTDAVFELDFT  225 (357)
T ss_dssp             HHHSSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEEE--TTEEEEECCEEETTEECCCEEEEECC
T ss_pred             hhccccccccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEEE--CCEEEEEeeecCCCcccCceEEEEec
Confidence               0000000012579999999888876543221 11  233332  345777631      13568888763

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=95.96  E-value=0.69  Score=39.86  Aligned_cols=185  Identities=12%  Similarity=0.119  Sum_probs=100.2

Q ss_pred             CEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC------CCeEEEEeCCCCeE
Q 019290           56 GRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA------YFGLMVVGPNGGQA  129 (343)
Q Consensus        56 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~------~~gi~~~d~~~~~~  129 (343)
                      ..+++||+.+.+|..+...+                  ....-+.++..  ++.||+...      .+.++++|+.+.++
T Consensus        90 ~~~~~~d~~~~~W~~~~~~p------------------~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W  149 (308)
T 1zgk_A           90 SALDCYNPMTNQWSPCAPMS------------------VPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEW  149 (308)
T ss_dssp             CCEEEEETTTTEEEECCCCS------------------SCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEE
T ss_pred             ceEEEECCCCCeEeECCCCC------------------cCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeE
Confidence            35899999998888764211                  11112344444  578888732      13489999999998


Q ss_pred             EEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEeecCCCC--cceeE
Q 019290          130 QQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSF--PNGVA  207 (343)
Q Consensus       130 ~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~--~~~i~  207 (343)
                      +.+......   ..-..+++.  ++.||+.-....            ......+++||+.+.+.+.+......  ....+
T Consensus       150 ~~~~~~p~~---r~~~~~~~~--~~~iyv~GG~~~------------~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~  212 (308)
T 1zgk_A          150 HLVAPMLTR---RIGVGVAVL--NRLLYAVGGFDG------------TNRLNSAECYYPERNEWRMITAMNTIRSGAGVC  212 (308)
T ss_dssp             EECCCCSSC---CBSCEEEEE--TTEEEEECCBCS------------SCBCCCEEEEETTTTEEEECCCCSSCCBSCEEE
T ss_pred             eECCCCCcc---ccceEEEEE--CCEEEEEeCCCC------------CCcCceEEEEeCCCCeEeeCCCCCCccccceEE
Confidence            887543322   122334444  378888432100            01134699999998887765321111  12233


Q ss_pred             EecCCCEEEEEEcC-----CCeEEEEEccCccccccceeeecCCC--CCCceeeCCCCCEEEEeccCCCccccccccccc
Q 019290          208 LSNNNSFLLLAESA-----TLKILRFWLQGERTTYTPQLFAEMPR--FPDNIKSDSKGEFWIAMNSARGKIESNKKTAFC  280 (343)
Q Consensus       208 ~~~d~~~lyv~~~~-----~~~i~~~~~~~~~~~~~~~~~~~~~~--~p~~i~~d~~G~lwi~~~~~~~~~~~~~~~~~~  280 (343)
                      +.  ++.+|+..-.     ...+++||+..+    +...+...+.  .-..+++ -+++||+.....+...         
T Consensus       213 ~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~----~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~---------  276 (308)
T 1zgk_A          213 VL--HNCIYAAGGYDGQDQLNSVERYDVETE----TWTFVAPMKHRRSALGITV-HQGRIYVLGGYDGHTF---------  276 (308)
T ss_dssp             EE--TTEEEEECCBCSSSBCCCEEEEETTTT----EEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSCB---------
T ss_pred             EE--CCEEEEEeCCCCCCccceEEEEeCCCC----cEEECCCCCCCccceEEEE-ECCEEEEEcCcCCCcc---------
Confidence            32  3457776422     257999998752    2223222221  0112222 2577888754322211         


Q ss_pred             cccCCCcccCCCeEEEECCCCCE
Q 019290          281 EETAKPWFLRDPVGVKFDVNGNV  303 (343)
Q Consensus       281 ~~~~~~~~~~~~~v~~~d~~g~~  303 (343)
                                ...+.+||++.+.
T Consensus       277 ----------~~~v~~yd~~~~~  289 (308)
T 1zgk_A          277 ----------LDSVECYDPDTDT  289 (308)
T ss_dssp             ----------CCEEEEEETTTTE
T ss_pred             ----------cceEEEEcCCCCE
Confidence                      2478899986544

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=95.67  E-value=1.8  Score=42.30  Aligned_cols=158  Identities=12%  Similarity=0.081  Sum_probs=88.7

Q ss_pred             CCCCeeEEEec----CCEEEEEEcCCCCeEEee-ecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCC--
Q 019290           44 CNGEGPYVGVS----DGRILKWKAANSGWTEFA-TTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAY--  116 (343)
Q Consensus        44 ~~g~~l~~~~~----~g~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~--  116 (343)
                      -++.++.++-.    ...+++||+.+.+|..+. ..+...             .+....-++++....++.||+....  
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~-------------~p~~R~~hs~~~~~~~~~lyv~GG~~~  462 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSE-------------VPVARMCHTFTTISRNNQLLLIGGRKA  462 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSC-------------CCCCCBSCEEEEETTTTEEEEECCBSS
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCC-------------CCccccceEEEEEccCCEEEEEcCCCC
Confidence            45564444432    245899999999998875 210000             0111112444444214678876321  


Q ss_pred             -----CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCC
Q 019290          117 -----FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKK  191 (343)
Q Consensus       117 -----~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~  191 (343)
                           +.+++||+.+.+++.+......   ..-+..++-. ++.||+.....              . ...+++||+.+.
T Consensus       463 ~~~~~~dv~~yd~~t~~W~~~~~~p~~---R~~h~~~~~~-~~~iyv~GG~~--------------~-~~~v~~yd~~t~  523 (695)
T 2zwa_A          463 PHQGLSDNWIFDMKTREWSMIKSLSHT---RFRHSACSLP-DGNVLILGGVT--------------E-GPAMLLYNVTEE  523 (695)
T ss_dssp             TTCBCCCCEEEETTTTEEEECCCCSBC---CBSCEEEECT-TSCEEEECCBC--------------S-SCSEEEEETTTT
T ss_pred             CCCccccEEEEeCCCCcEEECCCCCCC---cccceEEEEc-CCEEEEECCCC--------------C-CCCEEEEECCCC
Confidence                 3489999999988887543322   2234445434 38898843210              0 116999999988


Q ss_pred             ceEEeecC--C----CCcceeEEecCCCEEEEEEcC-------CCeEEEEEccCc
Q 019290          192 NVTVMYNG--L----SFPNGVALSNNNSFLLLAESA-------TLKILRFWLQGE  233 (343)
Q Consensus       192 ~~~~~~~~--~----~~~~~i~~~~d~~~lyv~~~~-------~~~i~~~~~~~~  233 (343)
                      .++.+...  .    .....+++..+.+.+|+..-.       .+.+++|++..+
T Consensus       524 ~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~  578 (695)
T 2zwa_A          524 IFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAE  578 (695)
T ss_dssp             EEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTT
T ss_pred             ceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCC
Confidence            88766531  1    112234445443568886422       356999998764

>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}

Probab=95.11  E-value=2.9  Score=41.32  Aligned_cols=175  Identities=17%  Similarity=0.183  Sum_probs=91.9

Q ss_pred             cccCCCCCCCceEEEcCCC-CeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCC
Q 019290           28 QLQLPGVVGPESLAFDCNG-EGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPV  106 (343)
Q Consensus        28 ~~~~~~~~~p~~l~~d~~g-~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~  106 (343)
                      ...+++.-...+|++++.+ +++|++...++|++-+..+..|..+.......  .+  +  .+  .........|++++.
T Consensus        14 ~~~~g~~g~i~~i~~~p~~~~~~y~~~~~ggv~~S~DgG~tW~~~~~~~~~~--~~--~--~~--~~~~~~~~~ia~dp~   85 (763)
T 3a0f_A           14 PVTISGGGFISGLVAHPTEKDLIYARTDIGGTYRWNAAKWEWEPITDFIINN--AL--A--GN--GANLLGTESIALDPH   85 (763)
T ss_dssp             ECSCCBCSCEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCBTT--CS--S--SC--CCCCCSEEEEECCTT
T ss_pred             eeEecCCCceeEEEeCCCCCCEEEEEeccCcEEEECCCCCCeeECccCcccc--cc--C--CC--cccccceeEEEECCC
Confidence            3344432367899999875 57888888888999988887888764211000  00  0  00  001223567888873


Q ss_pred             -CCeEEEEeC-------CCeEEEEeCCCCeEEEcccccC-C-C-Ccc-CcceeEEeCCC-CeEEEEeCCcccccccceee
Q 019290          107 -TCDLYIADA-------YFGLMVVGPNGGQAQQLASSAG-G-I-PFR-FTNDLDIDPNT-GIVYFTDSSIYFQRRQYFMS  173 (343)
Q Consensus       107 -~~~l~v~~~-------~~gi~~~d~~~~~~~~~~~~~~-~-~-~~~-~~~~i~~d~~d-g~l~v~~~~~~~~~~~~~~~  173 (343)
                       .+.+|++..       ..+|++-+=....++.+..... + . ... ....+++++.+ +.+|++..            
T Consensus        86 ~~~~~~~~~g~~~~~~~~~~i~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~~------------  153 (763)
T 3a0f_A           86 NPDRLYLAQGDYVQWDPWAAFLVSDDRGKTFKQYRSPVPMGANDMGRNGGERLAVNPHWTDELWFGSR------------  153 (763)
T ss_dssp             CTTCEEEEECSCTTTCSCCEEEEESSTTSSCEEEECSSCCCTTSTTTTSBCCEEECTTSTTCEEEECS------------
T ss_pred             CCCEEEEEecccccCCCCceEEEECCCCCCceeccCCcccCccccCccccceEEECCCCCCEEEEEeC------------
Confidence             468898753       2446655433334554431110 0 0 001 12468888632 67888542            


Q ss_pred             eeecCCCceEEEEeCCCCceEEeecCCC-------CcceeEEecC-CCEEEEEEcCCCeEEEEE
Q 019290          174 IATGDRSGRLLKYDPLKKNVTVMYNGLS-------FPNGVALSNN-NSFLLLAESATLKILRFW  229 (343)
Q Consensus       174 ~~~~~~~~~v~~~d~~~~~~~~~~~~~~-------~~~~i~~~~d-~~~lyv~~~~~~~i~~~~  229 (343)
                            .+.|++=.-.+...+.+. .+.       ....+++++. ...+|++....+.|++-+
T Consensus       154 ------~~~l~~S~DgG~TW~~~~-~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~g~v~~S~  210 (763)
T 3a0f_A          154 ------TQGLWRSTDRAQTWSRMN-QLPDSSTYGIGIISVIFDPKNVGTAYVASHAVGGLWVTW  210 (763)
T ss_dssp             ------SSCEEEESSTTSSCEECT-TSCCCSCTTTCEEEEEECSSSTTCEEEEESSTTCEEEES
T ss_pred             ------CCcEEEECCCCcCccccc-cCcccCCCccceEEEEECCCCCCEEEEEEeCCCeEEEEC
Confidence                  235775543333344332 111       1345667654 346888765333566543

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=94.19  E-value=2.8  Score=37.11  Aligned_cols=149  Identities=9%  Similarity=-0.045  Sum_probs=73.8

Q ss_pred             CCeEEEEeCCCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEE
Q 019290          107 TCDLYIADAYFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLK  185 (343)
Q Consensus       107 ~~~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~  185 (343)
                      ++.++++...++ |..+|+++|+.......... ....+..+++.| +|.+.++...... .    -.+..+...+.|-.
T Consensus       192 ~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~-~v~~v~~vafSp-dG~~lvs~s~~~~-~----w~laSGs~D~tIkl  264 (356)
T 2w18_A          192 MQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDS-YQASVCHKAYSE-MGLLFIVLSHPCA-K----ESESLRSPVFQLIV  264 (356)
T ss_dssp             STTEEEEEETTSEEEEEETTTCCEEEEEECCC----CCCEEEEEEE-TTEEEEEEC-----------------CCEEEEE
T ss_pred             CCceEEEecCCCcEEEEECCCCcEEEEEcCCCc-ceeeeEEEEECC-CCCEEEEeccCCC-c----ceeeccCCCcEEEE
Confidence            445666544455 88899999875433221111 123456678899 5887765332100 0    00111222455667


Q ss_pred             EeCCCCceEEee----cCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCC-ceeeCCCCCE
Q 019290          186 YDPLKKNVTVMY----NGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPD-NIKSDSKGEF  260 (343)
Q Consensus       186 ~d~~~~~~~~~~----~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~-~i~~d~~G~l  260 (343)
                      +|+.+++.....    .......-+..+.++. +.++.+.++.|..||+.....   ...+......+. .+++.++|++
T Consensus       265 Wd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~-~lASgS~DgTIkIWDl~tGk~---l~tL~gH~~~vvs~vafSPDG~~  340 (356)
T 2w18_A          265 INPKTTLSVGVMLYCLPPGQAGRFLEGDVKDH-CAAAILTSGTIAIWDLLLGQC---TALLPPVSDQHWSFVKWSGTDSH  340 (356)
T ss_dssp             EETTTTEEEEEEEECCCTTCCCCEEEEEEETT-EEEEEETTSCEEEEETTTCSE---EEEECCC--CCCCEEEECSSSSE
T ss_pred             EECCCCEEEEEEEeeccCCCcceeEccccCCC-EEEEEcCCCcEEEEECCCCcE---EEEecCCCCCeEEEEEECCCCCE
Confidence            788877643221    1111111222222233 456666788999999875221   122211111123 3678999988


Q ss_pred             EEEecc
Q 019290          261 WIAMNS  266 (343)
Q Consensus       261 wi~~~~  266 (343)
                      .++...
T Consensus       341 LaSGS~  346 (356)
T 2w18_A          341 LLAGQK  346 (356)
T ss_dssp             EEEECT
T ss_pred             EEEEEC
Confidence            777654

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=94.01  E-value=2.9  Score=36.59  Aligned_cols=81  Identities=15%  Similarity=0.108  Sum_probs=44.6

Q ss_pred             CCeEEEEeC--CCeEEEEeCCC--CeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCce
Q 019290          107 TCDLYIADA--YFGLMVVGPNG--GQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGR  182 (343)
Q Consensus       107 ~~~l~v~~~--~~gi~~~d~~~--~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~  182 (343)
                      ++.||+...  .+.++++|+.+  .+++.+.......  ..-..+++.  ++.||+.-......  +     ........
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~--R~~~~~~~~--~~~lyv~GG~~~~~--~-----~~~~~~~~   87 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGP--RDQATSAFI--DGNLYVFGGIGKNS--E-----GLTQVFND   87 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCC--CBSCEEEEE--TTEEEEECCEEECT--T-----SCEEECCC
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCc--CccceEEEE--CCEEEEEcCCCCCC--C-----ccceeecc
Confidence            678888732  23599999974  6777765433111  122344444  37898843210000  0     00011346


Q ss_pred             EEEEeCCCCceEEeec
Q 019290          183 LLKYDPLKKNVTVMYN  198 (343)
Q Consensus       183 v~~~d~~~~~~~~~~~  198 (343)
                      +++||+.+.+.+.+..
T Consensus        88 v~~yd~~~~~W~~~~~  103 (357)
T 2uvk_A           88 VHKYNPKTNSWVKLMS  103 (357)
T ss_dssp             EEEEETTTTEEEECSC
T ss_pred             EEEEeCCCCcEEECCC
Confidence            9999999888876543

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=93.74  E-value=3.5  Score=36.67  Aligned_cols=151  Identities=10%  Similarity=-0.081  Sum_probs=79.0

Q ss_pred             CCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeC-------CCCeEEEEeCCC
Q 019290           45 NGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNP-------VTCDLYIADAYF  117 (343)
Q Consensus        45 ~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~-------~~~~l~v~~~~~  117 (343)
                      ++..+.++..++.|..||.++++........              ......+.+..+++.+       .+++++++...+
T Consensus       100 ~~~~las~~~d~~v~lw~~~~~~~~~~~~~~--------------~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D  165 (393)
T 4gq1_A          100 YSLFLACVCQDNTVRLIITKNETIITQHVLG--------------GKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDD  165 (393)
T ss_dssp             EEEEEEEEETTSCEEEEEEETTEEEEEEEEC--------------TTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETT
T ss_pred             CCCEEEEEeCCCcEEEEECCCCccceeeeec--------------ccCCCCCceEEEEEccccccccCCCCCEEEEEECC
Confidence            4444556777888888888776543321110              0112233567888864       134555543344


Q ss_pred             e-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCe-EEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEE
Q 019290          118 G-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGI-VYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTV  195 (343)
Q Consensus       118 g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~  195 (343)
                      + +..+|..++..........    ..+..+++.|. +. +.++...                 .+.|..||..+++...
T Consensus       166 ~tv~~Wd~~~~~~~~~~~~~~----~~v~~v~~~p~-~~~~l~~~~~-----------------d~~v~~wd~~t~~~~~  223 (393)
T 4gq1_A          166 CTLIIWRLTDEGPILAGYPLS----SPGISVQFRPS-NPNQLIVGER-----------------NGNIRIFDWTLNLSAE  223 (393)
T ss_dssp             SEEEEEEEETTEEEEEEEECS----SCEEEEEEETT-EEEEEEEEET-----------------TSEEEEEETTCCC---
T ss_pred             CeEEEEECCCCceeeeecCCC----CCcEEEEECCC-CCceEEecCC-----------------CCEEEEEECCCCcccc
Confidence            4 8888876554322111111    34678899984 53 4443322                 3456666665443211


Q ss_pred             ee--------------------------cCCCCcceeEEe-cCCCEEEEEEcCCCeEEEEEccC
Q 019290          196 MY--------------------------NGLSFPNGVALS-NNNSFLLLAESATLKILRFWLQG  232 (343)
Q Consensus       196 ~~--------------------------~~~~~~~~i~~~-~d~~~lyv~~~~~~~i~~~~~~~  232 (343)
                      ..                          ........+.+. +|++.++ +...++.+..|++..
T Consensus       224 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~-s~s~d~~i~vwd~~~  286 (393)
T 4gq1_A          224 ENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGIL-AMCKSGAWLRWNLFA  286 (393)
T ss_dssp             -------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEE-EECTTSEEEEEEC--
T ss_pred             cccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEE-EEeCCCCEEEEECcc
Confidence            00                          011223455665 6777654 456788999998764

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=93.46  E-value=3.7  Score=36.88  Aligned_cols=153  Identities=8%  Similarity=-0.023  Sum_probs=85.1

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      ....|++.+++.+++++..+ ++..++.+.-. ..+.....    + . ..  ........ +..+++ . +..|+++ .
T Consensus        39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~-~~~~~~~~----~-~-~~--~~~~~lp~-V~~l~f-d-~~~L~v~-~  104 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLR-DHITSDST----P-L-TF--KWEKEIPD-VIFVCF-H-GDQVLVS-T  104 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETT-EEEEEEHHHHH-HHHHSSSC----C-C-CC--SEEEECTT-EEEEEE-E-TTEEEEE-E
T ss_pred             cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhh-hhhccccc----c-c-cc--eEEeeCCC-eeEEEE-C-CCEEEEE-c
Confidence            57889999999977777665 46667643211 00000000    0 0 00  00011223 788899 4 7889998 4


Q ss_pred             CCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEE
Q 019290          116 YFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTV  195 (343)
Q Consensus       116 ~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~  195 (343)
                      ..+|..||..+-..........    ..++++..-+  .++.+.+.                  .|.|+.+|.+++....
T Consensus       105 ~~~l~v~dv~sl~~~~~~~~~~----~~v~~i~~~~--p~~av~~~------------------dG~L~v~dl~~~~~~~  160 (388)
T 1xip_A          105 RNALYSLDLEELSEFRTVTSFE----KPVFQLKNVN--NTLVILNS------------------VNDLSALDLRTKSTKQ  160 (388)
T ss_dssp             SSEEEEEESSSTTCEEEEEECS----SCEEEEEECS--SEEEEEET------------------TSEEEEEETTTCCEEE
T ss_pred             CCcEEEEEchhhhccCccceee----cceeeEEecC--CCEEEEEC------------------CCCEEEEEccCCcccc
Confidence            5679999975432111101111    1134444443  23444332                  4678888887666544


Q ss_pred             eecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290          196 MYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQG  232 (343)
Q Consensus       196 ~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~  232 (343)
                      +.   .....++++++|  +.+. ..++.+..|++++
T Consensus       161 ~~---~~Vs~v~WSpkG--~~vg-~~dg~i~~~~~~~  191 (388)
T 1xip_A          161 LA---QNVTSFDVTNSQ--LAVL-LKDRSFQSFAWRN  191 (388)
T ss_dssp             EE---ESEEEEEECSSE--EEEE-ETTSCEEEEEEET
T ss_pred             cc---CCceEEEEcCCc--eEEE-EcCCcEEEEcCCC
Confidence            32   457789999988  4443 4578899998776

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=92.28  E-value=8.9  Score=37.32  Aligned_cols=164  Identities=9%  Similarity=0.068  Sum_probs=87.4

Q ss_pred             ceEEEcC-CCCeeEEEec------CCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeE
Q 019290           38 ESLAFDC-NGEGPYVGVS------DGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDL  110 (343)
Q Consensus        38 ~~l~~d~-~g~~l~~~~~------~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l  110 (343)
                      ++++.-. +|.++.++-.      ...+++||+.+..|..+...+                  ....-++.+... ++.|
T Consensus       443 hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p------------------~~R~~h~~~~~~-~~~i  503 (695)
T 2zwa_A          443 HTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLS------------------HTRFRHSACSLP-DGNV  503 (695)
T ss_dssp             CEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCS------------------BCCBSCEEEECT-TSCE
T ss_pred             eEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCC------------------CCcccceEEEEc-CCEE
Confidence            4555554 6664445421      235899999998888763211                  111224455533 6788


Q ss_pred             EEEeCCC---eEEEEeCCCCeEEEcccccCCCCccCcce-eEEeCCCCeEEEEeCCcccccccceeeeeec-CCCceEEE
Q 019290          111 YIADAYF---GLMVVGPNGGQAQQLASSAGGIPFRFTND-LDIDPNTGIVYFTDSSIYFQRRQYFMSIATG-DRSGRLLK  185 (343)
Q Consensus       111 ~v~~~~~---gi~~~d~~~~~~~~~~~~~~~~~~~~~~~-i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~-~~~~~v~~  185 (343)
                      |+.....   .+++||+.+.+++.+...........-+. ++++..++.+|+......           .+ .....+++
T Consensus       504 yv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~-----------~~~~~~~~v~~  572 (695)
T 2zwa_A          504 LILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFM-----------DQTTVSDKAII  572 (695)
T ss_dssp             EEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCT-----------TSSCBCCEEEE
T ss_pred             EEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCC-----------CCCeeeCcEEE
Confidence            8873221   49999999999887754211111112233 455652378998542100           00 11356999


Q ss_pred             EeCCCCc------eEEeecC--CC-CcceeEEecCCCEEEEEEc--------CCCeEEEEEccC
Q 019290          186 YDPLKKN------VTVMYNG--LS-FPNGVALSNNNSFLLLAES--------ATLKILRFWLQG  232 (343)
Q Consensus       186 ~d~~~~~------~~~~~~~--~~-~~~~i~~~~d~~~lyv~~~--------~~~~i~~~~~~~  232 (343)
                      ||+.+..      ++.+...  .. .....++..+ +.+|+..-        ....+++||+..
T Consensus       573 yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~v~~yd~~t  635 (695)
T 2zwa_A          573 FKYDAENATEPITVIKKLQHPLFQRYGSQIKYITP-RKLLIVGGTSPSGLFDRTNSIISLDPLS  635 (695)
T ss_dssp             EEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEET-TEEEEECCBCSSCCCCTTTSEEEEETTT
T ss_pred             EEccCCccccceEEEEcCCCCCCCcccceEEEeCC-CEEEEECCccCCCCCCCCCeEEEEECCC
Confidence            9998777      5544331  11 1123333322 35676532        135688888765

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=92.09  E-value=0.16  Score=45.54  Aligned_cols=51  Identities=8%  Similarity=0.017  Sum_probs=25.8

Q ss_pred             CceEEEEeCCCCceEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290          180 SGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQG  232 (343)
Q Consensus       180 ~~~v~~~d~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~  232 (343)
                      .+.|+.+|.++|+...-... .......+..++. +|++.+.++.|+.+|..+
T Consensus        18 dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g~-~~v~~s~dg~l~a~d~~t   68 (369)
T 2hz6_A           18 DGSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEEP-AFLPDPNDGSLYTLGSKN   68 (369)
T ss_dssp             TSEEEEEETTTCCEEEEEEC-CCSCCCC-----C-CEEECTTTCCEEEC----
T ss_pred             CCEEEEEECCCCCEEEEecC-CCceecceEcCCC-EEEEeCCCCEEEEEECCC
Confidence            35799999888876432222 2222222333443 566666788999998753

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=91.45  E-value=11  Score=36.87  Aligned_cols=114  Identities=11%  Similarity=0.084  Sum_probs=64.7

Q ss_pred             eeEEEe-CCCCeEEEEeCCC-----eEEEEeCCCC-eEEEcccccCCCCccCcceeEEeCCCC-eEEEEeCCcccccccc
Q 019290           99 LGIKFN-PVTCDLYIADAYF-----GLMVVGPNGG-QAQQLASSAGGIPFRFTNDLDIDPNTG-IVYFTDSSIYFQRRQY  170 (343)
Q Consensus        99 ~gi~~~-~~~~~l~v~~~~~-----gi~~~d~~~~-~~~~~~~~~~~~~~~~~~~i~~d~~dg-~l~v~~~~~~~~~~~~  170 (343)
                      .+..++ +++..|.++....     .|+++|++++ +.  +.....    ....+++..+ || .|+++....       
T Consensus       177 ~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~--l~~~~~----~~~~~~~Wsp-Dg~~l~y~~~d~-------  242 (751)
T 2xe4_A          177 MEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQT--IADKVS----GTNGEIVWGP-DHTSLFYVTKDE-------  242 (751)
T ss_dssp             EEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCC--CCCCEE----EECSCCEECS-STTEEEEEEECT-------
T ss_pred             eeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEe--CCcccc----CceeeEEEec-CCCEEEEEEECC-------
Confidence            457788 7444555443222     3999999988 52  111110    1134678888 45 566653210       


Q ss_pred             eeeeeecCCCceEEEEeCCCCce--EEee--cCCCCcceeEEecCCCEEEEEEc--CCCeEEEEEccC
Q 019290          171 FMSIATGDRSGRLLKYDPLKKNV--TVMY--NGLSFPNGVALSNNNSFLLLAES--ATLKILRFWLQG  232 (343)
Q Consensus       171 ~~~~~~~~~~~~v~~~d~~~~~~--~~~~--~~~~~~~~i~~~~d~~~lyv~~~--~~~~i~~~~~~~  232 (343)
                            ......||+++..++..  ..+.  .+.....+..+++||+.|+++..  ....|+.+++++
T Consensus       243 ------~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~  304 (751)
T 2xe4_A          243 ------TLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRK  304 (751)
T ss_dssp             ------TCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSS
T ss_pred             ------CCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCC
Confidence                  01123688888876542  1222  12223456789999998887653  246788888875

>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}

Probab=82.00  E-value=41  Score=33.02  Aligned_cols=163  Identities=11%  Similarity=0.006  Sum_probs=84.6

Q ss_pred             ceEEEcCC-CCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeC-CCCeEEEEeC
Q 019290           38 ESLAFDCN-GEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNP-VTCDLYIADA  115 (343)
Q Consensus        38 ~~l~~d~~-g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~-~~~~l~v~~~  115 (343)
                      ..|+.++. .+.+|++ .++.||+-...+..|+.+....                +.......-+.+.+ ..+.||++..
T Consensus       591 ~~i~~d~~~~~~~y~g-~~g~v~~S~DgG~tW~~~~~~l----------------p~~~~~~~~i~~~~~~~~~l~~~~~  653 (763)
T 3a0f_A          591 TGIAADRVQANTFYVY-VEGDFFVSTDGGKSYTKKGNGL----------------PCCWTYTGTPVTSNLRAGELWVSVK  653 (763)
T ss_dssp             SCEEECSSSTTCEEEE-ETTEEEEESSTTSBCEEECBTS----------------CCSSCCCEEEEECSSSTTCEEEEET
T ss_pred             ceEEEeccCCCEEEEE-cCCCEEEEeCCCcCccccccCC----------------CcccCccccEEECCCCCCcEEEEcC
Confidence            57888874 4557877 5777887665566777763211                00000111155554 3678999975


Q ss_pred             CCeEEEEeCCCCeEEEcccccCCCCcc--CcceeEEe-CCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCc
Q 019290          116 YFGLMVVGPNGGQAQQLASSAGGIPFR--FTNDLDID-PNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKN  192 (343)
Q Consensus       116 ~~gi~~~d~~~~~~~~~~~~~~~~~~~--~~~~i~~d-~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~  192 (343)
                      ..+|++-+-....++.+...... ...  ...+++.. .....+|+....             .....++||+-+-.+..
T Consensus       654 ~~~l~~S~D~G~tW~~~~~~~~~-~~~~~~~~g~~~~~~~~~~l~~~G~~-------------~~~~~~gl~~S~D~G~t  719 (763)
T 3a0f_A          654 GVGIYHSTDFGNTFTALAGSGSS-LNPAVFSIGAPQTPNATETLFLWGIP-------------SASQPEGLYMSTDNGGL  719 (763)
T ss_dssp             TTEEEEESSTTSBCEECTTBTTT-BEEEEEEEECCSSTTSSCEEEEEEEC-------------STTSCSEEEEESSTTSC
T ss_pred             CCeEEEEcCCCCCceEccCCCcc-cccceeEEeeecCCCCCceEEEEEEc-------------ccCCCcEEEEeCCCCCC
Confidence            56788775444456665421111 000  00122222 212578874300             00114568877655455


Q ss_pred             eEEeec---CCCCcceeEEecCC-CEEEEEEcCCCeEEEEEccC
Q 019290          193 VTVMYN---GLSFPNGVALSNNN-SFLLLAESATLKILRFWLQG  232 (343)
Q Consensus       193 ~~~~~~---~~~~~~~i~~~~d~-~~lyv~~~~~~~i~~~~~~~  232 (343)
                      .+.+..   .+..+..+++++.. ..||++. .+..|+.-++.+
T Consensus       720 W~~~~~~~~~~~~~~~i~~~p~~~~~v~~~T-~GrGi~~g~~~~  762 (763)
T 3a0f_A          720 WTRLNDDAHNYGGATVISGDPRIYGRVYIGM-NGRGIICAQALG  762 (763)
T ss_dssp             CEECSCTTCCTBCEEEEEECTTSTTEEEEEE-BSSCEEEEESCC
T ss_pred             cEeccCccccCCCcceEEeCCCCCCEEEEeC-CCCeEEEEecCC
Confidence            665542   22333367777643 4588764 466787766543

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=81.72  E-value=29  Score=31.05  Aligned_cols=130  Identities=12%  Similarity=0.086  Sum_probs=77.9

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeE-EeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEe
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWT-EFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIAD  114 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~  114 (343)
                      ++..|++  +++.++++ .++.|..||..+.... ....                    .......+...+  .++.+++
T Consensus        89 ~V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~--------------------~~~~v~~i~~~~--p~~av~~  143 (388)
T 1xip_A           89 DVIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVTS--------------------FEKPVFQLKNVN--NTLVILN  143 (388)
T ss_dssp             TEEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEEE--------------------CSSCEEEEEECS--SEEEEEE
T ss_pred             CeeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCccce--------------------eecceeeEEecC--CCEEEEE
Confidence            3889999  88888888 7889999997653311 1110                    001133444443  2466665


Q ss_pred             CCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCce-
Q 019290          115 AYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNV-  193 (343)
Q Consensus       115 ~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~-  193 (343)
                      ....|+.+|.+++....+.        ..+..+++.++ | +.++..                  .+.+..|++++++. 
T Consensus       144 ~dG~L~v~dl~~~~~~~~~--------~~Vs~v~WSpk-G-~~vg~~------------------dg~i~~~~~~~~~~~  195 (388)
T 1xip_A          144 SVNDLSALDLRTKSTKQLA--------QNVTSFDVTNS-Q-LAVLLK------------------DRSFQSFAWRNGEME  195 (388)
T ss_dssp             TTSEEEEEETTTCCEEEEE--------ESEEEEEECSS-E-EEEEET------------------TSCEEEEEEETTEEE
T ss_pred             CCCCEEEEEccCCcccccc--------CCceEEEEcCC-c-eEEEEc------------------CCcEEEEcCCCcccc
Confidence            4455999999877654321        35778999994 7 555332                  34566667766663 


Q ss_pred             --EEee------c---CCCCcceeEEecCCCEEEEE
Q 019290          194 --TVMY------N---GLSFPNGVALSNNNSFLLLA  218 (343)
Q Consensus       194 --~~~~------~---~~~~~~~i~~~~d~~~lyv~  218 (343)
                        .++.      .   +-..+.++.+.+++..+.+.
T Consensus       196 ~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y  231 (388)
T 1xip_A          196 KQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  231 (388)
T ss_dssp             EEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             ccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence              2331      1   22446678888777666543

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=81.05  E-value=43  Score=32.69  Aligned_cols=157  Identities=8%  Similarity=0.011  Sum_probs=79.0

Q ss_pred             ceEEEcCCCCeeEEEecC-----CEEEEEEcCCCCe--EEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeE
Q 019290           38 ESLAFDCNGEGPYVGVSD-----GRILKWKAANSGW--TEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDL  110 (343)
Q Consensus        38 ~~l~~d~~g~~l~~~~~~-----g~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l  110 (343)
                      .++++.+||+.+++...+     .+|++++..++..  ..+...                  .......++.+++++..|
T Consensus       224 ~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~------------------~~~~~~~~~~~SpDg~~l  285 (751)
T 2xe4_A          224 GEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEE------------------HNPLFSAFMYKAADTNTL  285 (751)
T ss_dssp             SCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEEC------------------CCTTCEEEEEECTTSSEE
T ss_pred             eeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEec------------------CCCceEEEEEECCCCCEE
Confidence            478899998755543322     3688888766431  111100                  011123466788855556


Q ss_pred             EEEeC---CCeEEEEeCCCC--eE--EEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceE
Q 019290          111 YIADA---YFGLMVVGPNGG--QA--QQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRL  183 (343)
Q Consensus       111 ~v~~~---~~gi~~~d~~~~--~~--~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v  183 (343)
                      ++...   ...|+.+|.+++  +.  +.+.....    ....++.... ++.+|+.....             .....+|
T Consensus       286 ~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~----~~~~s~~~~~-g~~l~~~t~~~-------------~a~~~~L  347 (751)
T 2xe4_A          286 CIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREK----GVRYDVQMHG-TSHLVILTNEG-------------GAVNHKL  347 (751)
T ss_dssp             EEEEECSSCEEEEEEESSSCTTCCCEEESSCCCT----TCCEEEEEET-TTEEEEEECTT-------------TCTTCEE
T ss_pred             EEEecCCCCceEEEEECCCCCCCceeEEeecCCC----CceEEEeeee-CCEEEEEeCCC-------------CCCCcEE
Confidence            66532   234899998765  34  44432211    1112222223 36777765431             0124579


Q ss_pred             EEEeCCC-CceEE-eecCCCCcceeEEecCCCEEEEEEcCCC--eEEEEEc
Q 019290          184 LKYDPLK-KNVTV-MYNGLSFPNGVALSNNNSFLLLAESATL--KILRFWL  230 (343)
Q Consensus       184 ~~~d~~~-~~~~~-~~~~~~~~~~i~~~~d~~~lyv~~~~~~--~i~~~~~  230 (343)
                      ++++.++ ++.+. +........--.++..++.++++...++  .|+++++
T Consensus       348 ~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~dl  398 (751)
T 2xe4_A          348 LIAPRGQPSDWSHVLVDHSEDVFMESIAVRSNYLVVAGRRAGLTRIWTMMA  398 (751)
T ss_dssp             EEEETTSTTCCCCEEECCCSSEEEEEEEECSSEEEEEEEETTEEEEEEEEC
T ss_pred             EEEcCCCcccceeeEECCCCCcEEEEEEEECCEEEEEEEeCCEEEEEEEec
Confidence            9998764 34333 3322221111123345667877655443  5777775

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	343
d1v04a_	340	b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PO	2e-25
d1pjxa_	314	b.68.6.1 (A:) Diisopropylfluorophosphatase (phosph	7e-14
d2p4oa1	302	b.68.6.3 (A:4-305) Hypothetical protein All0351 ho	3e-06
d2dg1a1	319	b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus	3e-04
d1npea_	263	b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId	0.001

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 340

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

 Score =  102 bits (255), Expect = 2e-25
 Identities = 45/268 (16%), Positives = 70/268 (26%), Gaps = 24/268 (8%)

Query: 86  STNTTLEPLCGRPLGIKFNPVTCDLYIA-DAYFGLMVVGPNGGQAQ-------------Q 131
              + LE +        FNP     +I  D    L+VV   G  +               
Sbjct: 80  PAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLL 139

Query: 132 LASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKK 191
              +         ND+            D        + +     G     +  Y P   
Sbjct: 140 HLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMH-LGLAWSFVTYYSP--N 196

Query: 192 NVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDN 251
           +V V+  G  F NG+ +S +  ++ +AE    KI  +      T  TP          DN
Sbjct: 197 DVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTL-TPLRVLSFDTLVDN 255

Query: 252 IKSDSKGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNE 311
           I  D             G      +  F +    P      +         V  V     
Sbjct: 256 ISVDPVTGDLWVGCHPNG-----MRIFFYDAENPPGSEVLRIQDILSEEPKVTVVYA-EN 309

Query: 312 GNTLNSVSEVQEYGEYLYTGSSVQPYVV 339
           G  L   +    Y   L  G+     + 
Sbjct: 310 GTVLQGSTVAAVYKGKLLIGTVFHKALY 337

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} Length = 314

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

 Score = 68.9 bits (167), Expect = 7e-14
 Identities = 48/250 (19%), Positives = 84/250 (33%), Gaps = 34/250 (13%)

Query: 33  GVVGPESLAFDCNG-------EGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDG 85
            + G E   FD NG       E    G   G IL+        T       +        
Sbjct: 16  DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVN-------- 67

Query: 86  STNTTLEPLCGRPLGIKFNPVTCDLYIADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTN 145
                     G P G + +     L++AD   GL+VV  +G   +     + G   +  N
Sbjct: 68  -------GYGGIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCN 120

Query: 146 DLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSFPNG 205
           D   D   G ++ T  +       Y  S+     S   +        +  +     FPNG
Sbjct: 121 DCAFDYE-GNLWITAPAGEVAPADYTRSMQEKFGS---IYCFTTDGQMIQVDTAFQFPNG 176

Query: 206 VALSNNNS----FLLLAESATLKILRFWLQGERTTYTPQLFAEMPR----FPDNIKSDSK 257
           +A+ + N      L++AE+ T K+  + ++G       +++  +P       D +  D  
Sbjct: 177 IAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDED 236

Query: 258 GEFWIAMNSA 267
               +A   +
Sbjct: 237 NNLLVANWGS 246

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} Length = 302

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

 Score = 45.8 bits (107), Expect = 3e-06
 Identities = 35/257 (13%), Positives = 68/257 (26%), Gaps = 33/257 (12%)

Query: 12  FPLVFPCVILSSKSYQQL-QLPGVVGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTE 70
            P ++    +     + +   P     E+LA   +G         G I+           
Sbjct: 4   LPPIYADKPIELAPAKIITSFPVNTFLENLASAPDGTIFVTNHEVGEIVSITP------- 56

Query: 71  FATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFGLMVVGPNGGQAQ 130
                                  + G+  G+ F     DL         + V        
Sbjct: 57  --------------DGNQQIHATVEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDG 101

Query: 131 QLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLK 190
            + +        F N +    +       DS            I     SG +    P+ 
Sbjct: 102 TVETLLTLPDAIFLNGITPLSD-TQYLTADSYRGAIWL-----IDVVQPSGSIWLEHPML 155

Query: 191 KNVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPD 250
              +   +     NG+    N   L ++ +  + +LR  +        P++F E     D
Sbjct: 156 A-RSNSESVFPAANGLKRFGNF--LYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQT-NID 211

Query: 251 NIKSDSKGEFWIAMNSA 267
           +   D +G  + A +  
Sbjct: 212 DFAFDVEGNLYGATHIY 228

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} Length = 319

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

 Score = 39.7 bits (91), Expect = 3e-04
 Identities = 43/259 (16%), Positives = 76/259 (29%), Gaps = 43/259 (16%)

Query: 20  ILSSKSYQQLQLPGVVGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRA 79
            ++++ + ++   G+   E L FD  G+   + V +G I K                   
Sbjct: 26  TITAEPWLEISKKGL-QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFV------ 78

Query: 80  REICDGSTNTTLEPLCGRPLGIKFNP----VTCDLYIADAYFGLMVVGPNGGQAQQLASS 135
                             P  IK +       C L    +  G+     NG   Q +   
Sbjct: 79  -------------SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIED 125

Query: 136 AGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTV 195
                    +D+  D   G  +                              P  + VT 
Sbjct: 126 LS--TAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVY------------YVSPDFRTVTP 171

Query: 196 MYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQ-----LFAEMPRFPD 250
           +   +S  NG+ALS +   L + E+   ++ R  L+ +  T  P       +      PD
Sbjct: 172 IIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPD 231

Query: 251 NIKSDSKGEFWIAMNSARG 269
           +   DS    ++AM     
Sbjct: 232 SCCIDSDDNLYVAMYGQGR 250

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} Length = 263

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.9 bits (87), Expect = 0.001
 Identities = 34/177 (19%), Positives = 55/177 (31%), Gaps = 23/177 (12%)

Query: 139 IPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYN 198
           IP +    L  D    +VY+TD S                    + +        T +  
Sbjct: 33  IPAKVIIGLAFDCVDKVVYWTDIS-----------------EPSIGRASLHGGEPTTIIR 75

Query: 199 G-LSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSK 257
             L  P G+AL +    +   +S   +I    + G +      LF      P  I +D  
Sbjct: 76  QDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRR---VLFDTGLVNPRGIVTDPV 132

Query: 258 GE--FWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEG 312
               +W   N    KIE++              L  P G+ FD   + +  +D    
Sbjct: 133 RGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTH 189

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	343
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.96
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	99.94
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.94
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.88
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.87
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	99.85
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.83
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.77
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	99.72
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	99.7
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	99.66
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	99.65
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.6
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.59
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.56
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.51
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.38
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	99.37
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.24
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.24
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.2
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.11
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.01
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	98.97
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	98.97
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	98.94
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.92
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.92
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	98.88
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	98.87
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	98.87
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	98.79
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.76
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.72
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	98.69
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	98.65
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	98.65
d1tbga_	340	beta1-subunit of the signal-transducing G protein	98.61
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	98.56
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.55
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	98.54
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	98.54
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.52
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	98.52
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	98.5
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	98.46
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	98.44
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.37
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.28
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.26
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	98.25
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	98.24
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.22
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	98.2
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	98.16
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	98.15
d1tbga_	340	beta1-subunit of the signal-transducing G protein	98.04
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.04
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	97.8
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	97.65
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	97.59
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	97.57
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	97.49
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.37
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	97.23
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	97.18
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.17
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.13
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	96.94
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	96.93
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	96.86
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	96.83
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	96.51
d2ebsa1	427	Oligoxyloglucan reducing end-specific cellobiohydr	96.51
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	96.47
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	96.45
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	95.71
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	95.46
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	95.28
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	95.19
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	94.96
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	94.8
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	94.65
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	94.6
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	94.29
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	94.18
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	94.03
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	93.95
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	93.53
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	92.75
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	91.98
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	91.94
d2ebsa1	427	Oligoxyloglucan reducing end-specific cellobiohydr	90.75
d1tl2a_	235	Tachylectin-2 {Japanese horseshoe crab (Tachypleus	89.98
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	89.84
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	89.75
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	88.38
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	81.93

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.96  E-value=1.7e-27  Score=211.38  Aligned_cols=264  Identities=19%  Similarity=0.247  Sum_probs=191.5

Q ss_pred             CCCCCceEEEcCCCCeeEEEe-------cCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeC
Q 019290           33 GVVGPESLAFDCNGEGPYVGV-------SDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNP  105 (343)
Q Consensus        33 ~~~~p~~l~~d~~g~~l~~~~-------~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~  105 (343)
                      ++..||++++|++|+++++..       .+++|+++|+.++....+....               .....+.|+|+++++
T Consensus        16 ~~~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~---------------~~~~~g~P~Gl~~~~   80 (314)
T d1pjxa_          16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPE---------------VNGYGGIPAGCQCDR   80 (314)
T ss_dssp             CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCE---------------ETTEECCEEEEEECS
T ss_pred             CCCCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCc---------------cccCCCcceeEEEeC
Confidence            566799999999999544432       2578999999988766653211               112234699999999


Q ss_pred             CCCeEEEEeCCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEE
Q 019290          106 VTCDLYIADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLK  185 (343)
Q Consensus       106 ~~~~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~  185 (343)
                      +++.+|+++..+++++++++++....+.....+.++..+|++++|+ +|++||++.............  .....+.||+
T Consensus        81 dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~-~G~lyvtd~~~~~~~~~~~~~--~~~~~G~v~~  157 (314)
T d1pjxa_          81 DANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRS--MQEKFGSIYC  157 (314)
T ss_dssp             SSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBT--TSSSCEEEEE
T ss_pred             CCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECC-CCCEEEecCccCcccccccce--eccCCceEEE
Confidence            5567999988889999999876555444445556677899999999 599999997633222111111  1223578999


Q ss_pred             EeCCCCceEEeecCCCCcceeEEecCCC----EEEEEEcCCCeEEEEEccCccccccceeeecC----CCCCCceeeCCC
Q 019290          186 YDPLKKNVTVMYNGLSFPNGVALSNNNS----FLLLAESATLKILRFWLQGERTTYTPQLFAEM----PRFPDNIKSDSK  257 (343)
Q Consensus       186 ~d~~~~~~~~~~~~~~~~~~i~~~~d~~----~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~----~~~p~~i~~d~~  257 (343)
                      ++++ ++...+..++..|||++++++++    .||++++.+++|++|+++++..+...+.+...    .+.|+||++|++
T Consensus       158 ~~~d-g~~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~  236 (314)
T d1pjxa_         158 FTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDED  236 (314)
T ss_dssp             ECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTT
T ss_pred             Eeec-CceeEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecC
Confidence            9987 56666677788899999998765    79999999999999998765443444455432    235899999999


Q ss_pred             CCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECCCCC-EEEEeeCCCCCccCCceeEEEe--CCEEEEecCC
Q 019290          258 GEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGN-VVDVLDGNEGNTLNSVSEVQEY--GEYLYTGSSV  334 (343)
Q Consensus       258 G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~-~~~~~~~~~~~~~~~~~~~~~~--~g~l~i~~~~  334 (343)
                      |+||++++.                        .+.|++|||++. ....+..|..    .++.+...  .++|||++..
T Consensus       237 GnlyVa~~~------------------------~g~I~~~dp~~g~~~~~i~~p~~----~~t~~afg~d~~~lyVt~~~  288 (314)
T d1pjxa_         237 NNLLVANWG------------------------SSHIEVFGPDGGQPKMRIRCPFE----KPSNLHFKPQTKTIFVTEHE  288 (314)
T ss_dssp             CCEEEEEET------------------------TTEEEEECTTCBSCSEEEECSSS----CEEEEEECTTSSEEEEEETT
T ss_pred             CcEEEEEcC------------------------CCEEEEEeCCCCEEEEEEECCCC----CEEEEEEeCCCCEEEEEECC
Confidence            999999987                        458999999854 4455555432    34444433  4479999999


Q ss_pred             CCeEEEEcC
Q 019290          335 QPYVVVIKA  343 (343)
Q Consensus       335 ~~~i~~~~~  343 (343)
                      .++|.+++.
T Consensus       289 ~g~i~~~~~  297 (314)
T d1pjxa_         289 NNAVWKFEW  297 (314)
T ss_dssp             TTEEEEEEC
T ss_pred             CCcEEEEEC
Confidence            999999873

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.94  E-value=3.9e-25  Score=194.23  Aligned_cols=235  Identities=17%  Similarity=0.193  Sum_probs=181.7

Q ss_pred             CCceEEEcC-CCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEe
Q 019290           36 GPESLAFDC-NGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIAD  114 (343)
Q Consensus        36 ~p~~l~~d~-~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~  114 (343)
                      -.|+..+|+ +|.++|++..+++|+++|+.+++...+..                     ...+.++++.+ +++||++.
T Consensus        19 LgEgp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~~~~---------------------~~~~~~i~~~~-dg~l~va~   76 (295)
T d2ghsa1          19 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTVHAL---------------------PFMGSALAKIS-DSKQLIAS   76 (295)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEEC---------------------SSCEEEEEEEE-TTEEEEEE
T ss_pred             eeeCCeEECCCCEEEEEECCCCEEEEEECCCCeEEEEEC---------------------CCCcEEEEEec-CCCEEEEE
Confidence            348999997 57777899999999999999987666531                     23467888887 89999995


Q ss_pred             CCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceE
Q 019290          115 AYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVT  194 (343)
Q Consensus       115 ~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~  194 (343)
                       .+|++++|+++++++.+.......+...+|++++|+ +|++|+++....           .....+.+++++.  ++.+
T Consensus        77 -~~gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~-~G~iw~~~~~~~-----------~~~~~g~l~~~~~--g~~~  141 (295)
T d2ghsa1          77 -DDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRK-----------AETGAGSIYHVAK--GKVT  141 (295)
T ss_dssp             -TTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETT-----------CCTTCEEEEEEET--TEEE
T ss_pred             -eCccEEeecccceeeEEeeeecCCCcccceeeEECC-CCCEEEEecccc-----------ccccceeEeeecC--CcEE
Confidence             689999999999988876554555567899999999 599999985421           0122456777753  6777


Q ss_pred             EeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccc--cccceeeec---CCCCCCceeeCCCCCEEEEeccCCC
Q 019290          195 VMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERT--TYTPQLFAE---MPRFPDNIKSDSKGEFWIAMNSARG  269 (343)
Q Consensus       195 ~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~--~~~~~~~~~---~~~~p~~i~~d~~G~lwi~~~~~~~  269 (343)
                      .+..++..+|+++++++++.+|++++..+.|++|+++.+..  ..+...+..   ..+.|+++++|++|+||++.+.   
T Consensus       142 ~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~---  218 (295)
T d2ghsa1         142 KLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWG---  218 (295)
T ss_dssp             EEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEET---
T ss_pred             EEeeccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeC---
Confidence            77777888999999999999999999999999999875421  122333333   3457999999999999999987   


Q ss_pred             ccccccccccccccCCCcccCCCeEEEECCCCCEEEEeeCCCCCccCCceeEEE---eCCEEEEecCCC
Q 019290          270 KIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEGNTLNSVSEVQE---YGEYLYTGSSVQ  335 (343)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~~~~~~~~~~~~~---~~g~l~i~~~~~  335 (343)
                                           .+.|.+|||+|+.+..+..|..    .++.+..   +.++|||+++..
T Consensus       219 ---------------------~g~V~~~dp~G~~~~~i~lP~~----~~T~~~FGG~d~~~LyvTta~~  262 (295)
T d2ghsa1         219 ---------------------EGAVDRYDTDGNHIARYEVPGK----QTTCPAFIGPDASRLLVTSARE  262 (295)
T ss_dssp             ---------------------TTEEEEECTTCCEEEEEECSCS----BEEEEEEESTTSCEEEEEEBCT
T ss_pred             ---------------------CCceEEecCCCcEeeEecCCCC----ceEEEEEeCCCCCEEEEEECCc
Confidence                                 4589999999999999988754    3555544   357899998763

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.94  E-value=5.4e-24  Score=189.06  Aligned_cols=240  Identities=22%  Similarity=0.258  Sum_probs=176.7

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      .+|++++|++|+++|++..+++|++++++++....+..                   .....|+++++++ +|+||+++.
T Consensus        41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~-------------------~~~~~p~gla~~~-dG~l~va~~  100 (319)
T d2dg1a1          41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFV-------------------SHKANPAAIKIHK-DGRLFVCYL  100 (319)
T ss_dssp             CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEE-------------------CSSSSEEEEEECT-TSCEEEEEC
T ss_pred             CcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEe-------------------CCCCCeeEEEECC-CCCEEEEec
Confidence            46999999999977788899999999998876554421                   2334689999998 899999964


Q ss_pred             C-----CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCC
Q 019290          116 Y-----FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLK  190 (343)
Q Consensus       116 ~-----~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~  190 (343)
                      .     .+++.++..++.........  .....++++++|+ +|++|+++....           .....+.++++++++
T Consensus       101 ~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~nd~~~d~-~G~l~vtd~~~~-----------~~~~~g~v~~~~~dg  166 (319)
T d2dg1a1         101 GDFKSTGGIFAATENGDNLQDIIEDL--STAYCIDDMVFDS-KGGFYFTDFRGY-----------STNPLGGVYYVSPDF  166 (319)
T ss_dssp             TTSSSCCEEEEECTTSCSCEEEECSS--SSCCCEEEEEECT-TSCEEEEECCCB-----------TTBCCEEEEEECTTS
T ss_pred             CCCccceeEEEEcCCCceeeeeccCC--CcccCCcceeEEe-ccceeecccccc-----------cccCcceeEEEeccc
Confidence            3     35889998877665543222  2246789999999 599999986521           012256799999987


Q ss_pred             CceEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccc---eeeec--CCCCCCceeeCCCCCEEEEec
Q 019290          191 KNVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTP---QLFAE--MPRFPDNIKSDSKGEFWIAMN  265 (343)
Q Consensus       191 ~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~---~~~~~--~~~~p~~i~~d~~G~lwi~~~  265 (343)
                      +.++.+..++..|+|+++++|++.||++++..++|++|+++.+......   .....  ....|+||++|++|+||++++
T Consensus       167 ~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~  246 (319)
T d2dg1a1         167 RTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMY  246 (319)
T ss_dssp             CCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEE
T ss_pred             ceeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEc
Confidence            7777777788899999999999999999999999999998754321111   11111  223599999999999999998


Q ss_pred             cCCCccccccccccccccCCCcccCCCeEEEECCCCCEEEEeeCCCCCc--cCCceeEEEe--CCEEEEecC
Q 019290          266 SARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEGNT--LNSVSEVQEY--GEYLYTGSS  333 (343)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~~~~--~~~~~~~~~~--~g~l~i~~~  333 (343)
                      .                        .+.|.+|||+|+.+..+..|....  ....+.+...  ...+|+++.
T Consensus       247 ~------------------------~g~V~~~~p~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         247 G------------------------QGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN  294 (319)
T ss_dssp             T------------------------TTEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred             C------------------------CCEEEEECCCCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcC
Confidence            7                        568999999999998887765311  1223333332  456777653

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.88  E-value=5.1e-20  Score=161.79  Aligned_cols=238  Identities=17%  Similarity=0.180  Sum_probs=167.1

Q ss_pred             ccccccccCCCCCCCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEE
Q 019290           23 SKSYQQLQLPGVVGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIK  102 (343)
Q Consensus        23 ~~~~~~~~~~~~~~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~  102 (343)
                      ++.+.+++.+.  .||++++++||++|+++..+++|+++++.+. ...+.                    .....|.+++
T Consensus        18 ~~v~~~~p~~~--~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~-~~~~~--------------------~~~~~~~gla   74 (302)
T d2p4oa1          18 AKIITSFPVNT--FLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHA--------------------TVEGKVSGLA   74 (302)
T ss_dssp             EEEEEEECTTC--CEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEE--------------------ECSSEEEEEE
T ss_pred             ccEEEECCCCC--CcCCEEECCCCCEEEEeCCCCEEEEEeCCCC-EEEEE--------------------cCCCCcceEE
Confidence            44455555443  6999999999996667788999999998764 33332                    2234689999


Q ss_pred             EeCCCCeEEEEeCCCe-EEEEeC--CCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCC
Q 019290          103 FNPVTCDLYIADAYFG-LMVVGP--NGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDR  179 (343)
Q Consensus       103 ~~~~~~~l~v~~~~~g-i~~~d~--~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~  179 (343)
                      +++ ++++|+++...+ +++++.  ..+....+.....   ...++++++++ +|++|+++..                 
T Consensus        75 ~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~n~i~~~~-~g~~~v~~~~-----------------  132 (302)
T d2p4oa1          75 FTS-NGDLVATGWNADSIPVVSLVKSDGTVETLLTLPD---AIFLNGITPLS-DTQYLTADSY-----------------  132 (302)
T ss_dssp             ECT-TSCEEEEEECTTSCEEEEEECTTSCEEEEEECTT---CSCEEEEEESS-SSEEEEEETT-----------------
T ss_pred             EcC-CCCeEEEecCCceEEEEEecccccceeeccccCC---ccccceeEEcc-CCCEEeeccc-----------------
Confidence            999 889999975543 555544  3444554433322   25689999999 6999999876                 


Q ss_pred             CceEEEEeCCCCceEEeec-----------CCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCC
Q 019290          180 SGRLLKYDPLKKNVTVMYN-----------GLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRF  248 (343)
Q Consensus       180 ~~~v~~~d~~~~~~~~~~~-----------~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  248 (343)
                      .+.++++++.++.......           ....++++..+  ++.+|++++..++|++++.++.........+... ..
T Consensus       133 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~--~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~  209 (302)
T d2p4oa1         133 RGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF--GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ-TN  209 (302)
T ss_dssp             TTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE--TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES-CC
T ss_pred             cccceeeeccCCcceeEecCCccceeeccCccccccccccc--CCceeeecCCCCeEEeccccccccccccccccCC-CC
Confidence            5679999888766543221           12345677654  5689999999999999998865442333343333 35


Q ss_pred             CCceeeCCCCCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECCCCCEEEEeeCCCCCccCCceeEEE-----
Q 019290          249 PDNIKSDSKGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEGNTLNSVSEVQE-----  323 (343)
Q Consensus       249 p~~i~~d~~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~~~~~~~~~~~~~-----  323 (343)
                      |+++++|++|+||++.+.                        .+.|.+++++|+.........+  ...++.+..     
T Consensus       210 pdgia~d~dG~l~va~~~------------------------~~~V~~i~p~G~~~~~~~~~~~--~~~pt~vafg~~~~  263 (302)
T d2p4oa1         210 IDDFAFDVEGNLYGATHI------------------------YNSVVRIAPDRSTTIIAQAEQG--VIGSTAVAFGQTEG  263 (302)
T ss_dssp             CSSEEEBTTCCEEEECBT------------------------TCCEEEECTTCCEEEEECGGGT--CTTEEEEEECCSTT
T ss_pred             CcceEECCCCCEEEEEcC------------------------CCcEEEECCCCCEEEEEecCCC--CCCceEEEEcCCCC
Confidence            999999999999999987                        4589999999987766654333  344555544     


Q ss_pred             eCCEEEEecCC
Q 019290          324 YGEYLYTGSSV  334 (343)
Q Consensus       324 ~~g~l~i~~~~  334 (343)
                      +.+.||+++..
T Consensus       264 D~~~Lyvtt~~  274 (302)
T d2p4oa1         264 DCTAIYVVTNG  274 (302)
T ss_dssp             TTTEEEEEECT
T ss_pred             CCCEEEEECCC
Confidence            35679998765

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.87  E-value=2.8e-20  Score=159.89  Aligned_cols=235  Identities=20%  Similarity=0.301  Sum_probs=166.6

Q ss_pred             CCCceEEEcCCCCeeEEEe-cCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEE
Q 019290           35 VGPESLAFDCNGEGPYVGV-SDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIA  113 (343)
Q Consensus        35 ~~p~~l~~d~~g~~l~~~~-~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~  113 (343)
                      .+|++|++|++|++|+++. ..+++.++++.+.....+.                   ......|.++++++ +++||++
T Consensus        14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~-------------------~~~~~~p~gvav~~-~g~i~v~   73 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLP-------------------FNGLYQPQGLAVDG-AGTVYVT   73 (260)
T ss_dssp             CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECC-------------------CCSCCSCCCEEECT-TCCEEEE
T ss_pred             CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEec-------------------cCCccCceEEEEcC-CCCEEEe
Confidence            3799999999999555553 5578999887664433321                   12345689999998 8899999


Q ss_pred             eCCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCce
Q 019290          114 DAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNV  193 (343)
Q Consensus       114 ~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~  193 (343)
                      +..+++.++...+....... .   .....|+++++|+ +|++|+++..                 ..++++++..+...
T Consensus        74 d~~~~~i~~~~~~~~~~~~~-~---~~~~~p~~iavd~-~g~i~v~d~~-----------------~~~~~~~~~~~~~~  131 (260)
T d1rwia_          74 DFNNRVVTLAAGSNNQTVLP-F---DGLNYPEGLAVDT-QGAVYVADRG-----------------NNRVVKLAAGSKTQ  131 (260)
T ss_dssp             ETTTEEEEECTTCSCCEECC-C---CSCCSEEEEEECT-TCCEEEEEGG-----------------GTEEEEECTTCSSC
T ss_pred             eeeeceeeeeeeccceeeee-e---eeeeecccccccc-cceeEeeccc-----------------ccccccccccccee
Confidence            98888766665433322221 1   1235689999999 5999998865                 45788888765544


Q ss_pred             EEe-ecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeee-cCCCCCCceeeCCCCCEEEEeccCCCcc
Q 019290          194 TVM-YNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFA-EMPRFPDNIKSDSKGEFWIAMNSARGKI  271 (343)
Q Consensus       194 ~~~-~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~p~~i~~d~~G~lwi~~~~~~~~~  271 (343)
                      ... ..++..|.+++++++++ +|+++...++|.+++.++...    ..+. .....|.++++|++|+||+++..     
T Consensus       132 ~~~~~~~~~~p~~i~~~~~g~-~~v~~~~~~~i~~~d~~~~~~----~~~~~~~~~~p~gi~~d~~g~l~vsd~~-----  201 (260)
T d1rwia_         132 TVLPFTGLNDPDGVAVDNSGN-VYVTDTDNNRVVKLEAESNNQ----VVLPFTDITAPWGIAVDEAGTVYVTEHN-----  201 (260)
T ss_dssp             EECCCCSCCSCCEEEECTTCC-EEEEEGGGTEEEEECTTTCCE----EECCCSSCCSEEEEEECTTCCEEEEETT-----
T ss_pred             eeeeecccCCcceeeecCCCC-Eeeecccccccccccccccee----eeeeccccCCCccceeeeeeeeeeeecC-----
Confidence            433 34567899999999876 899998899999999776322    2222 12245899999999999999987     


Q ss_pred             ccccccccccccCCCcccCCCeEEEECCCCCEEEEeeCCCCCccCCceeEEEe-CCEEEEecCCCCeEEEEcC
Q 019290          272 ESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEGNTLNSVSEVQEY-GEYLYTGSSVQPYVVVIKA  343 (343)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~~~~i~~~~~  343 (343)
                                         .+.|+++++++.....+.. .  ....+..+..+ +|+||++....++|.++++
T Consensus       202 -------------------~~~i~~~~~~~~~~~~~~~-~--~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~  252 (260)
T d1rwia_         202 -------------------TNQVVKLLAGSTTSTVLPF-T--GLNTPLAVAVDSDRTVYVADRGNDRVVKLTS  252 (260)
T ss_dssp             -------------------TTEEEEECTTCSCCEECCC-C--SCCCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred             -------------------CCEEEEEeCCCCeEEEEcc-C--CCCCeEEEEEeCCCCEEEEECCCCEEEEEeC
Confidence                               4588999998776555432 1  23455666555 7899999999999999874

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.85  E-value=5.6e-19  Score=156.97  Aligned_cols=278  Identities=18%  Similarity=0.179  Sum_probs=181.0

Q ss_pred             CCCceEEEcCCCCeeEEEec------------CCEEEEEEcCCCC--eEEeeecCCCccccccCCCCCcccCCCcCCeee
Q 019290           35 VGPESLAFDCNGEGPYVGVS------------DGRILKWKAANSG--WTEFATTAPHRAREICDGSTNTTLEPLCGRPLG  100 (343)
Q Consensus        35 ~~p~~l~~d~~g~~l~~~~~------------~g~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g  100 (343)
                      .+||+|+++++|..+.++..            .|.|+.+|.++..  ...+......+             ......|+|
T Consensus        35 ~G~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~-------------~~~~f~PhG  101 (340)
T d1v04a_          35 NGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTL-------------DISSFNPHG  101 (340)
T ss_dssp             SCCCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSS-------------CGGGCCEEE
T ss_pred             CCcceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCC-------------CCcceeccc
Confidence            37999999999984444321            3788888875532  22222111100             122346999


Q ss_pred             EEEeCC-CC--eEEEEeCC-C----eEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCccccccccee
Q 019290          101 IKFNPV-TC--DLYIADAY-F----GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFM  172 (343)
Q Consensus       101 i~~~~~-~~--~l~v~~~~-~----gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~  172 (343)
                      |.+..+ ++  .|++.++. .    .++.++.++.+.+.. ..........+|++++.. +|.+|+++.+..........
T Consensus       102 i~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~-~~v~~~~~~~pNDv~~~~-~g~fy~Tnd~~~~~~~~~~~  179 (340)
T d1v04a_         102 ISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHL-KTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSW  179 (340)
T ss_dssp             EEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEE-EEECCTTCSSEEEEEEEE-TTEEEEEESCSCCSHHHHHH
T ss_pred             eeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEE-eecCCccccCccceEEec-CCCEEEecCccCcChhhhhh
Confidence            887431 33  57887652 1    367777766655543 334444567899999999 59999998764322211111


Q ss_pred             eeeecCCCceEEEEeCCCCceEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCce
Q 019290          173 SIATGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNI  252 (343)
Q Consensus       173 ~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i  252 (343)
                      ....+.+.+.|+++|+  ++.+.+..++..||||++++|++.|||+++..++|++|+++++.. ........+++.||++
T Consensus       180 e~~~~~~~g~v~~~~~--~~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~-l~~~~~~~l~~~pDNi  256 (340)
T d1v04a_         180 EMHLGLAWSFVTYYSP--NDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWT-LTPLRVLSFDTLVDNI  256 (340)
T ss_dssp             HHHTTCCCEEEEEECS--SCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSC-EEEEEEEECSSEEEEE
T ss_pred             hHhhcCCceeEEEEcC--CceEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcc-cceEEEecCCCCCCcc
Confidence            1112334677888986  456666778899999999999999999999999999999987654 2333333477889999


Q ss_pred             eeCC-CCCEEEEeccCCCccccccccccccccCCCcccCCCeEEEE---CC-CCCEEEEeeCCCCCccCCceeEEEeCCE
Q 019290          253 KSDS-KGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKF---DV-NGNVVDVLDGNEGNTLNSVSEVQEYGEY  327 (343)
Q Consensus       253 ~~d~-~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---d~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~  327 (343)
                      .+|+ +|.+|++.+.....+          ....++......++++   +. +++....+.. ++......+.+.+.+|+
T Consensus       257 ~~d~~~g~lwva~~p~~~~~----------~~~~~~~~~~s~v~ri~~~~~~~~~v~~~~~~-~G~~~~~~T~a~~~~g~  325 (340)
T d1v04a_         257 SVDPVTGDLWVGCHPNGMRI----------FFYDAENPPGSEVLRIQDILSEEPKVTVVYAE-NGTVLQGSTVAAVYKGK  325 (340)
T ss_dssp             EECTTTCCEEEEEESCHHHH----------HSCCTTSCCCEEEEEEECTTSSSCEEEEEEEE-CSSSSCSEEEEEEETTE
T ss_pred             EEecCCCEEEEEECCcccch----------hhhcccCCCCceeEEEEeccCCCCeEEEEEeC-CCcEeeceEEEEEECCE
Confidence            9996 689999987632211          1111111223345555   22 4666666664 45456777888888999


Q ss_pred             EEEecCCCCeEEEEc
Q 019290          328 LYTGSSVQPYVVVIK  342 (343)
Q Consensus       328 l~i~~~~~~~i~~~~  342 (343)
                      ||+|+...+.+ .|+
T Consensus       326 L~iGs~~~~~l-~C~  339 (340)
T d1v04a_         326 LLIGTVFHKAL-YCD  339 (340)
T ss_dssp             EEEEESSSCEE-EEE
T ss_pred             EEEEeeeCCce-Eec
Confidence            99999998766 676

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.83  E-value=1.2e-17  Score=144.83  Aligned_cols=243  Identities=13%  Similarity=0.213  Sum_probs=167.5

Q ss_pred             CCCCCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEE
Q 019290           33 GVVGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYI  112 (343)
Q Consensus        33 ~~~~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v  112 (343)
                      ++..|.+|++|++|++++++..+++|.+||+++.-...+.... .             .......|.++++....+..++
T Consensus        21 ~f~~P~gvavd~dg~i~VaD~~n~rI~v~d~~G~~~~~~~~~~-~-------------~~~~~~~p~~~~~~~~~~~~~~   86 (279)
T d1q7fa_          21 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECG-K-------------RDSQLLYPNRVAVVRNSGDIIV   86 (279)
T ss_dssp             CBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBS-S-------------STTCBSSEEEEEEETTTTEEEE
T ss_pred             eECCccEEEEcCCCCEEEEECCCCEEEEEeCCCCEEEEecccC-C-------------Ccccccccccccccccccccce
Confidence            4678999999999996667788999999998865444442111 0             0123346888888765566665


Q ss_pred             EeCC-C-eEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCC
Q 019290          113 ADAY-F-GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLK  190 (343)
Q Consensus       113 ~~~~-~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~  190 (343)
                      +... + .|.+++..+.....+.    ......+.++++++ +|++|+++..                 ...++++++++
T Consensus        87 ~~~~~~~~i~~~~~~g~~~~~~~----~~~~~~p~~~avd~-~G~i~v~~~~-----------------~~~~~~~~~~g  144 (279)
T d1q7fa_          87 TERSPTHQIQIYNQYGQFVRKFG----ATILQHPRGVTVDN-KGRIIVVECK-----------------VMRVIIFDQNG  144 (279)
T ss_dssp             EECGGGCEEEEECTTSCEEEEEC----TTTCSCEEEEEECT-TSCEEEEETT-----------------TTEEEEECTTS
T ss_pred             eccCCccccccccccccceeecC----CCcccccceecccc-CCcEEEEeec-----------------cceeeEeccCC
Confidence            5332 3 4778887754444331    11235688999999 5999998865                 56788899875


Q ss_pred             CceEEe--ecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeec--CCCCCCceeeCCCCCEEEEecc
Q 019290          191 KNVTVM--YNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAE--MPRFPDNIKSDSKGEFWIAMNS  266 (343)
Q Consensus       191 ~~~~~~--~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~p~~i~~d~~G~lwi~~~~  266 (343)
                      ..+..+  ...+..+.++++++++ .+|+++...++|++|+.++..    ...+..  ....|.++++|++|+|||++..
T Consensus       145 ~~~~~~g~~~~~~~~~~i~~d~~g-~i~v~d~~~~~V~~~d~~G~~----~~~~g~~g~~~~P~giavD~~G~i~Vad~~  219 (279)
T d1q7fa_         145 NVLHKFGCSKHLEFPNGVVVNDKQ-EIFISDNRAHCVKVFNYEGQY----LRQIGGEGITNYPIGVGINSNGEILIADNH  219 (279)
T ss_dssp             CEEEEEECTTTCSSEEEEEECSSS-EEEEEEGGGTEEEEEETTCCE----EEEESCTTTSCSEEEEEECTTCCEEEEECS
T ss_pred             ceeecccccccccccceeeeccce-eEEeeeccccceeeeecCCce----eeeecccccccCCcccccccCCeEEEEECC
Confidence            444433  2345678899999876 589999999999999987732    223321  2235899999999999999864


Q ss_pred             CCCccccccccccccccCCCcccCCCeEEEECCCCCEEEEeeCCCCCccCCceeEE-EeCCEEEEecCCCCeEEEEc
Q 019290          267 ARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEGNTLNSVSEVQ-EYGEYLYTGSSVQPYVVVIK  342 (343)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~~~~~~~~~~~~-~~~g~l~i~~~~~~~i~~~~  342 (343)
                      .                       ...|.+|+++|+.+..+..+..  ...+..+. ..+|+||+++. .++|.+|+
T Consensus       220 ~-----------------------~~~v~~f~~~G~~~~~~~~~~~--~~~p~~vav~~dG~l~V~~~-n~~v~~fr  270 (279)
T d1q7fa_         220 N-----------------------NFNLTIFTQDGQLISALESKVK--HAQCFDVALMDDGSVVLASK-DYRLYIYR  270 (279)
T ss_dssp             S-----------------------SCEEEEECTTSCEEEEEEESSC--CSCEEEEEEETTTEEEEEET-TTEEEEEE
T ss_pred             C-----------------------CcEEEEECCCCCEEEEEeCCCC--CCCEeEEEEeCCCcEEEEeC-CCeEEEEE
Confidence            1                       1368889999998777754322  23344444 44899999884 67888875

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.77  E-value=9e-17  Score=137.66  Aligned_cols=190  Identities=20%  Similarity=0.317  Sum_probs=133.7

Q ss_pred             ccCCCCCCCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCC
Q 019290           29 LQLPGVVGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTC  108 (343)
Q Consensus        29 ~~~~~~~~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~  108 (343)
                      +..++...|++|+++++|+ +|++...+.+.++...+.....+.                   ......|.++++++ ++
T Consensus        51 ~~~~~~~~p~gvav~~~g~-i~v~d~~~~~i~~~~~~~~~~~~~-------------------~~~~~~p~~iavd~-~g  109 (260)
T d1rwia_          51 LPFNGLYQPQGLAVDGAGT-VYVTDFNNRVVTLAAGSNNQTVLP-------------------FDGLNYPEGLAVDT-QG  109 (260)
T ss_dssp             CCCCSCCSCCCEEECTTCC-EEEEETTTEEEEECTTCSCCEECC-------------------CCSCCSEEEEEECT-TC
T ss_pred             eccCCccCceEEEEcCCCC-EEEeeeeeceeeeeeeccceeeee-------------------eeeeeecccccccc-cc
Confidence            3445667899999999999 554444555555554443222211                   12245689999998 88


Q ss_pred             eEEEEeCCC-eEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEe
Q 019290          109 DLYIADAYF-GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYD  187 (343)
Q Consensus       109 ~l~v~~~~~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d  187 (343)
                      ++|+++..+ .+.+++..+........    .....+.++++++ +|++|+++..                 .++|++++
T Consensus       110 ~i~v~d~~~~~~~~~~~~~~~~~~~~~----~~~~~p~~i~~~~-~g~~~v~~~~-----------------~~~i~~~d  167 (260)
T d1rwia_         110 AVYVADRGNNRVVKLAAGSKTQTVLPF----TGLNDPDGVAVDN-SGNVYVTDTD-----------------NNRVVKLE  167 (260)
T ss_dssp             CEEEEEGGGTEEEEECTTCSSCEECCC----CSCCSCCEEEECT-TCCEEEEEGG-----------------GTEEEEEC
T ss_pred             eeEeeccccccccccccccceeeeeee----cccCCcceeeecC-CCCEeeeccc-----------------cccccccc
Confidence            999998653 48888887654333221    1235688999999 5999998865                 56799999


Q ss_pred             CCCCceEEee-cCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecC-CCCCCceeeCCCCCEEEEec
Q 019290          188 PLKKNVTVMY-NGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEM-PRFPDNIKSDSKGEFWIAMN  265 (343)
Q Consensus       188 ~~~~~~~~~~-~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~p~~i~~d~~G~lwi~~~  265 (343)
                      .++.....+. ..+..|.++++++++. ||+++..+++|++++.++.    ....+... -..|.+|++|++|+|||++.
T Consensus       168 ~~~~~~~~~~~~~~~~p~gi~~d~~g~-l~vsd~~~~~i~~~~~~~~----~~~~~~~~~~~~P~~i~~d~~g~l~vad~  242 (260)
T d1rwia_         168 AESNNQVVLPFTDITAPWGIAVDEAGT-VYVTEHNTNQVVKLLAGST----TSTVLPFTGLNTPLAVAVDSDRTVYVADR  242 (260)
T ss_dssp             TTTCCEEECCCSSCCSEEEEEECTTCC-EEEEETTTTEEEEECTTCS----CCEECCCCSCCCEEEEEECTTCCEEEEEG
T ss_pred             cccceeeeeeccccCCCccceeeeeee-eeeeecCCCEEEEEeCCCC----eEEEEccCCCCCeEEEEEeCCCCEEEEEC
Confidence            8765544433 5577899999998875 8999999999999987652    22232221 13588999999999999988


Q ss_pred             c
Q 019290          266 S  266 (343)
Q Consensus       266 ~  266 (343)
                      .
T Consensus       243 ~  243 (260)
T d1rwia_         243 G  243 (260)
T ss_dssp             G
T ss_pred             C
Confidence            7

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.72  E-value=3.4e-15  Score=127.74  Aligned_cols=206  Identities=17%  Similarity=0.207  Sum_probs=153.3

Q ss_pred             CCceEEEcCCCC-eeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEe
Q 019290           36 GPESLAFDCNGE-GPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIAD  114 (343)
Q Consensus        36 ~p~~l~~d~~g~-~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~  114 (343)
                      .+.+|++|...+ ++|++...+.|++.+.+++....+..                   .....|.+|++|...++||+++
T Consensus        37 ~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~-------------------~~~~~p~~iAvD~~~~~lY~~d   97 (263)
T d1npea_          37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIR-------------------QDLGSPEGIALDHLGRTIFWTD   97 (263)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEC-------------------TTCCCEEEEEEETTTTEEEEEE
T ss_pred             cEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEE-------------------eccccccEEEEeccCCeEEEec
Confidence            356789997655 56677888999999988766555431                   2335689999998788999998


Q ss_pred             CCC-eEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCce
Q 019290          115 AYF-GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNV  193 (343)
Q Consensus       115 ~~~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~  193 (343)
                      ... .|.++++++...+.+...    ....|.++++||..|.+|+++.+.               ...+|++.+.++...
T Consensus        98 ~~~~~I~~~~~dg~~~~~l~~~----~l~~p~~l~vdp~~g~ly~t~~~~---------------~~~~I~r~~~dG~~~  158 (263)
T d1npea_          98 SQLDRIEVAKMDGTQRRVLFDT----GLVNPRGIVTDPVRGNLYWTDWNR---------------DNPKIETSHMDGTNR  158 (263)
T ss_dssp             TTTTEEEEEETTSCSCEEEECS----SCSSEEEEEEETTTTEEEEEECCS---------------SSCEEEEEETTSCCC
T ss_pred             cCCCEEEEEecCCceEEEEecc----cccCCcEEEEecccCcEEEeecCC---------------CCcEEEEecCCCCCc
Confidence            754 599999986654444322    124688999998778999988641               145699999886655


Q ss_pred             EEee-cCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEeccCCCccc
Q 019290          194 TVMY-NGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNSARGKIE  272 (343)
Q Consensus       194 ~~~~-~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~~~~~~~~  272 (343)
                      +.+. .++..|+++++++.++.|||++...+.|.++++++    ...+.+......|.+++++ +++||++++.      
T Consensus       159 ~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g----~~~~~v~~~~~~P~~lav~-~~~lYwtd~~------  227 (263)
T d1npea_         159 RILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQ----PGRRKVLEGLQYPFAVTSY-GKNLYYTDWK------  227 (263)
T ss_dssp             EEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTE----EEEEEEEECCCSEEEEEEE-TTEEEEEETT------
T ss_pred             eeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCC----CCeEEEECCCCCcEEEEEE-CCEEEEEECC------
Confidence            5544 46788999999998999999999999999999987    3333343333358899998 5889999987      


Q ss_pred             cccccccccccCCCcccCCCeEEEECCC-CCEEEEee
Q 019290          273 SNKKTAFCEETAKPWFLRDPVGVKFDVN-GNVVDVLD  308 (343)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~v~~~d~~-g~~~~~~~  308 (343)
                                        .+.|.++|.. |+....+.
T Consensus       228 ------------------~~~I~~~~~~~g~~~~~~~  246 (263)
T d1npea_         228 ------------------TNSVIAMDLAISKEMDTFH  246 (263)
T ss_dssp             ------------------TTEEEEEETTTTEEEEEEC
T ss_pred             ------------------CCEEEEEECCCCccceEEC
Confidence                              5689999985 66666554

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=2.4e-14  Score=122.61  Aligned_cols=221  Identities=14%  Similarity=0.157  Sum_probs=152.5

Q ss_pred             CCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCCCe-EEEEeCCCCeEEEcc
Q 019290           55 DGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFG-LMVVGPNGGQAQQLA  133 (343)
Q Consensus        55 ~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~~g-i~~~d~~~~~~~~~~  133 (343)
                      ...|.+++.+++....+.                    +....+.++.++..++.||+++...+ |++.+.++.......
T Consensus         9 ~~~I~~~~l~~~~~~~~~--------------------~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~   68 (266)
T d1ijqa1           9 RHEVRKMTLDRSEYTSLI--------------------PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY   68 (266)
T ss_dssp             BSSEEEEETTSCCCEEEE--------------------CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------C
T ss_pred             CCeEEEEECCCCcceeee--------------------CCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcce
Confidence            345889999887665553                    23345788999987889999986544 888877642211110


Q ss_pred             cccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEE-eecCCCCcceeEEecCC
Q 019290          134 SSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTV-MYNGLSFPNGVALSNNN  212 (343)
Q Consensus       134 ~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~-~~~~~~~~~~i~~~~d~  212 (343)
                      ..........+.++++|...++||+++..                 .++|.+++.++..... +...+..|.++++++..
T Consensus        69 ~~~~~~~~~~p~glAvD~~~~~lY~~d~~-----------------~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~  131 (266)
T d1ijqa1          69 DTVISRDIQAPDGLAVDWIHSNIYWTDSV-----------------LGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVH  131 (266)
T ss_dssp             EEEECSSCSCCCEEEEETTTTEEEEEETT-----------------TTEEEEEETTSSSEEEEEECTTCCEEEEEEETTT
T ss_pred             EEEEeCCCCCcceEEEeeccceEEEEecC-----------------CCEEEeEecCCceEEEEEcCCCCCcceEEEEccc
Confidence            11011123468899999756899999865                 5679999988665544 34556789999999988


Q ss_pred             CEEEEEEcCC-CeEEEEEccCccccccceeeec-CCCCCCceeeCCC-CCEEEEeccCCCccccccccccccccCCCccc
Q 019290          213 SFLLLAESAT-LKILRFWLQGERTTYTPQLFAE-MPRFPDNIKSDSK-GEFWIAMNSARGKIESNKKTAFCEETAKPWFL  289 (343)
Q Consensus       213 ~~lyv~~~~~-~~i~~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~-G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (343)
                      +.+||++... .+|++.++++    ...+.+.. .-..|.++++|.. ++||+++..                       
T Consensus       132 g~ly~~~~~~~~~I~r~~~dG----s~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~-----------------------  184 (266)
T d1ijqa1         132 GFMYWTDWGTPAKIKKGGLNG----VDIYSLVTENIQWPNGITLDLLSGRLYWVDSK-----------------------  184 (266)
T ss_dssp             TEEEEEECSSSCEEEEEETTS----CCEEEEECSSCSCEEEEEEETTTTEEEEEETT-----------------------
T ss_pred             CeEEEeccCCCcceeEeccCC----CceecccccccceeeEEEeeccccEEEEecCC-----------------------
Confidence            8999998643 5899999988    33344433 2346899999975 579999776                       


Q ss_pred             CCCeEEEECCCCCEEEE-eeCCCCCccCCceeEEEeCCEEEEecCCCCeEEEEc
Q 019290          290 RDPVGVKFDVNGNVVDV-LDGNEGNTLNSVSEVQEYGEYLYTGSSVQPYVVVIK  342 (343)
Q Consensus       290 ~~~~v~~~d~~g~~~~~-~~~~~~~~~~~~~~~~~~~g~l~i~~~~~~~i~~~~  342 (343)
                       .+.|.+++.+|..... ......  ...+..+..++++||++...+++|.+++
T Consensus       185 -~~~I~~~~~dG~~~~~~~~~~~~--~~~p~~lav~~~~ly~td~~~~~I~~~~  235 (266)
T d1ijqa1         185 -LHSISSIDVNGGNRKTILEDEKR--LAHPFSLAVFEDKVFWTDIINEAIFSAN  235 (266)
T ss_dssp             -TTEEEEEETTSCSCEEEEECTTT--TSSEEEEEEETTEEEEEETTTTEEEEEE
T ss_pred             -cCEEEEEECCCCCEEEEEeCCCc--ccccEEEEEECCEEEEEECCCCeEEEEE
Confidence             4588899988764333 333222  3445566667899999999999999985

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=3.4e-14  Score=121.70  Aligned_cols=213  Identities=15%  Similarity=0.209  Sum_probs=149.5

Q ss_pred             CCCCCCCceEEEcCCCC-eeEEEecCCEEEEEEcCCCCeE-EeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCC
Q 019290           31 LPGVVGPESLAFDCNGE-GPYVGVSDGRILKWKAANSGWT-EFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTC  108 (343)
Q Consensus        31 ~~~~~~p~~l~~d~~g~-~l~~~~~~g~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~  108 (343)
                      ++++..|.+|.+|...+ ++|++...+.|++.+.++.... ...                .........|.+|++|...+
T Consensus        26 ~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~----------------~~~~~~~~~p~glAvD~~~~   89 (266)
T d1ijqa1          26 IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYD----------------TVISRDIQAPDGLAVDWIHS   89 (266)
T ss_dssp             ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CE----------------EEECSSCSCCCEEEEETTTT
T ss_pred             eCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceE----------------EEEeCCCCCcceEEEeeccc
Confidence            35556788999998655 5667778889999876542111 000                00113345688999998788


Q ss_pred             eEEEEeCCCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEe
Q 019290          109 DLYIADAYFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYD  187 (343)
Q Consensus       109 ~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d  187 (343)
                      +||+++...+ |.++++++...+.+....    ...|.++++|+..|.||+++.+.                ..+|+|.+
T Consensus        90 ~lY~~d~~~~~I~v~~~~g~~~~~~~~~~----~~~P~~l~vd~~~g~ly~~~~~~----------------~~~I~r~~  149 (266)
T d1ijqa1          90 NIYWTDSVLGTVSVADTKGVKRKTLFREN----GSKPRAIVVDPVHGFMYWTDWGT----------------PAKIKKGG  149 (266)
T ss_dssp             EEEEEETTTTEEEEEETTSSSEEEEEECT----TCCEEEEEEETTTTEEEEEECSS----------------SCEEEEEE
T ss_pred             eEEEEecCCCEEEeEecCCceEEEEEcCC----CCCcceEEEEcccCeEEEeccCC----------------CcceeEec
Confidence            9999987654 999999876554443221    24588999998668999988641                45799999


Q ss_pred             CCCCceEEee-cCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeec-C--CCCCCceeeCCCCCEEEE
Q 019290          188 PLKKNVTVMY-NGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAE-M--PRFPDNIKSDSKGEFWIA  263 (343)
Q Consensus       188 ~~~~~~~~~~-~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~-~--~~~p~~i~~d~~G~lwi~  263 (343)
                      .++...+.+. ..+..|+++++++.++.|||++...+.|.+++++|.    ..+.+.. .  ...|.+++++ ++.||++
T Consensus       150 ~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~----~~~~~~~~~~~~~~p~~lav~-~~~ly~t  224 (266)
T d1ijqa1         150 LNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG----NRKTILEDEKRLAHPFSLAVF-EDKVFWT  224 (266)
T ss_dssp             TTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC----SCEEEEECTTTTSSEEEEEEE-TTEEEEE
T ss_pred             cCCCceecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCC----CEEEEEeCCCcccccEEEEEE-CCEEEEE
Confidence            9866666555 456789999999999999999999999999999873    3333332 2  1347789998 5789999


Q ss_pred             eccCCCccccccccccccccCCCcccCCCeEEEECC-CCCEEEEee
Q 019290          264 MNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDV-NGNVVDVLD  308 (343)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~  308 (343)
                      ++.                        .+.|++++. +|+....+.
T Consensus       225 d~~------------------------~~~I~~~~~~~g~~~~~~~  246 (266)
T d1ijqa1         225 DII------------------------NEAIFSANRLTGSDVNLLA  246 (266)
T ss_dssp             ETT------------------------TTEEEEEETTTCCCCEEEE
T ss_pred             ECC------------------------CCeEEEEECCCCcceEEEE
Confidence            887                        458889986 455444443

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=2.7e-14  Score=122.05  Aligned_cols=192  Identities=17%  Similarity=0.212  Sum_probs=141.8

Q ss_pred             eeeEEEeCCCCeEEEEeCCCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeee
Q 019290           98 PLGIKFNPVTCDLYIADAYFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIAT  176 (343)
Q Consensus        98 p~gi~~~~~~~~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~  176 (343)
                      +.++++|..++.||+++...+ |++.+.+++..+.+....    ...|.++++|...+.||+++..              
T Consensus        38 ~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~----~~~p~~iAvD~~~~~lY~~d~~--------------   99 (263)
T d1npea_          38 IIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQD----LGSPEGIALDHLGRTIFWTDSQ--------------   99 (263)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTT----CCCEEEEEEETTTTEEEEEETT--------------
T ss_pred             EEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEec----cccccEEEEeccCCeEEEeccC--------------
Confidence            568999986889999987655 999998876655553221    2458899999755899998865              


Q ss_pred             cCCCceEEEEeCCCCceEEee-cCCCCcceeEEecCCCEEEEEEcCC--CeEEEEEccCccccccceeeec-CCCCCCce
Q 019290          177 GDRSGRLLKYDPLKKNVTVMY-NGLSFPNGVALSNNNSFLLLAESAT--LKILRFWLQGERTTYTPQLFAE-MPRFPDNI  252 (343)
Q Consensus       177 ~~~~~~v~~~d~~~~~~~~~~-~~~~~~~~i~~~~d~~~lyv~~~~~--~~i~~~~~~~~~~~~~~~~~~~-~~~~p~~i  252 (343)
                         .+.|.++++++...+.+. ..+..|.+++++|..+.+||++...  .+|++.++++.    ..+.+.. .-..|.++
T Consensus       100 ---~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~----~~~~i~~~~~~~P~gl  172 (263)
T d1npea_         100 ---LDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT----NRRILAQDNLGLPNGL  172 (263)
T ss_dssp             ---TTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC----CCEEEECTTCSCEEEE
T ss_pred             ---CCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCC----CceeeeeecccccceE
Confidence               567999998766555444 4567899999999999999998653  46999999873    3333332 23468899


Q ss_pred             eeCCC-CCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECCCCCEEEEeeCCCCCccCCceeEEEeCCEEEEe
Q 019290          253 KSDSK-GEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEGNTLNSVSEVQEYGEYLYTG  331 (343)
Q Consensus       253 ~~d~~-G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~  331 (343)
                      ++|.. ++||+++..                        .+.|.+++.+|.....+..  +  ...+..+..++++||++
T Consensus       173 aiD~~~~~lYw~d~~------------------------~~~I~~~~~~g~~~~~v~~--~--~~~P~~lav~~~~lYwt  224 (263)
T d1npea_         173 TFDAFSSQLCWVDAG------------------------THRAECLNPAQPGRRKVLE--G--LQYPFAVTSYGKNLYYT  224 (263)
T ss_dssp             EEETTTTEEEEEETT------------------------TTEEEEEETTEEEEEEEEE--C--CCSEEEEEEETTEEEEE
T ss_pred             EEeecCcEEEEEeCC------------------------CCEEEEEECCCCCeEEEEC--C--CCCcEEEEEECCEEEEE
Confidence            99975 579888765                        4588899998876544432  1  12345566679999999


Q ss_pred             cCCCCeEEEEc
Q 019290          332 SSVQPYVVVIK  342 (343)
Q Consensus       332 ~~~~~~i~~~~  342 (343)
                      +..+++|.+++
T Consensus       225 d~~~~~I~~~~  235 (263)
T d1npea_         225 DWKTNSVIAMD  235 (263)
T ss_dssp             ETTTTEEEEEE
T ss_pred             ECCCCEEEEEE
Confidence            99999999986

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.60  E-value=6.4e-14  Score=122.95  Aligned_cols=202  Identities=13%  Similarity=0.080  Sum_probs=132.6

Q ss_pred             CCcCCeeeEEEeCCCCeEEEEeCC--------CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcc
Q 019290           93 PLCGRPLGIKFNPVTCDLYIADAY--------FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIY  164 (343)
Q Consensus        93 ~~~~~p~gi~~~~~~~~l~v~~~~--------~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~  164 (343)
                      .....+.|+++++ +|+||+++..        ..|+++|+++++...+...........+++++++++++.+|+++.   
T Consensus        15 ~~~~g~EGpa~d~-dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~---   90 (314)
T d1pjxa_          15 EDIPGAEGPVFDK-NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM---   90 (314)
T ss_dssp             CCCTTCEEEEECT-TSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET---
T ss_pred             cCCCCCeEeEEeC-CCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEEC---
Confidence            4455688999998 8999998643        239999999887766543222222345899999994235788664   


Q ss_pred             cccccceeeeeecCCCceEEEEeCCCCceEEeec-----CCCCcceeEEecCCCEEEEEEcC---------------CCe
Q 019290          165 FQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYN-----GLSFPNGVALSNNNSFLLLAESA---------------TLK  224 (343)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~-----~~~~~~~i~~~~d~~~lyv~~~~---------------~~~  224 (343)
                                     ..++.+++++++....+..     .+..||+++++++|. +|+++..               .++
T Consensus        91 ---------------~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~-lyvtd~~~~~~~~~~~~~~~~~~G~  154 (314)
T d1pjxa_          91 ---------------RLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTRSMQEKFGS  154 (314)
T ss_dssp             ---------------TTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCBTTSSSCEE
T ss_pred             ---------------CCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCC-EEEecCccCcccccccceeccCCce
Confidence                           3469999988655443322     134589999999985 8998753               357


Q ss_pred             EEEEEccCccccccceeeecCCCCCCceeeCCCC-----CEEEEeccCCCccccccccccccccCCCcccCCCeEEEEC-
Q 019290          225 ILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKG-----EFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFD-  298 (343)
Q Consensus       225 i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G-----~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-  298 (343)
                      |++++.++.     ...+...-..|+|+++++++     .||+++..                        .+.|++|+ 
T Consensus       155 v~~~~~dg~-----~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~------------------------~~~i~~~d~  205 (314)
T d1pjxa_         155 IYCFTTDGQ-----MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETP------------------------TKKLWSYDI  205 (314)
T ss_dssp             EEEECTTSC-----EEEEEEEESSEEEEEEEECTTSCEEEEEEEETT------------------------TTEEEEEEE
T ss_pred             EEEEeecCc-----eeEeeCCcceeeeeEECCCCCcceeEEEEEeec------------------------ccceEEeec
Confidence            888887652     12222212248899987765     49999876                        45777876 


Q ss_pred             -CCCCEE--EEeeCCCCCccCCceeEEEe-CCEEEEecCCCCeEEEEcC
Q 019290          299 -VNGNVV--DVLDGNEGNTLNSVSEVQEY-GEYLYTGSSVQPYVVVIKA  343 (343)
Q Consensus       299 -~~g~~~--~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~~~~i~~~~~  343 (343)
                       .++...  ..+....+.....+..+..+ +|+||+++...++|.+|++
T Consensus       206 ~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp  254 (314)
T d1pjxa_         206 KGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGP  254 (314)
T ss_dssp             EETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred             cCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeC
Confidence             345442  22222222112234444444 8999999999999999985

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.59  E-value=8e-14  Score=122.62  Aligned_cols=196  Identities=11%  Similarity=0.145  Sum_probs=134.5

Q ss_pred             eeeEEEeCCCCeEEEEeCCCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeee
Q 019290           98 PLGIKFNPVTCDLYIADAYFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIAT  176 (343)
Q Consensus        98 p~gi~~~~~~~~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~  176 (343)
                      ..|+++++ +++||+++...+ |+++++++++.........    ..++++++++ ||++|+++....            
T Consensus        42 lEG~~~D~-~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~----~~p~gla~~~-dG~l~va~~~~~------------  103 (319)
T d2dg1a1          42 LEGLNFDR-QGQLFLLDVFEGNIFKINPETKEIKRPFVSHK----ANPAAIKIHK-DGRLFVCYLGDF------------  103 (319)
T ss_dssp             EEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECSS----SSEEEEEECT-TSCEEEEECTTS------------
T ss_pred             cEeCEECC-CCCEEEEECCCCEEEEEECCCCeEEEEEeCCC----CCeeEEEECC-CCCEEEEecCCC------------
Confidence            36899998 788999986655 9999999876554422211    3588999999 699999875421            


Q ss_pred             cCCCceEEEEeCCCCceEEeec---CCCCcceeEEecCCCEEEEEEcC------CCeEEEEEccCccccccceeeecCCC
Q 019290          177 GDRSGRLLKYDPLKKNVTVMYN---GLSFPNGVALSNNNSFLLLAESA------TLKILRFWLQGERTTYTPQLFAEMPR  247 (343)
Q Consensus       177 ~~~~~~v~~~d~~~~~~~~~~~---~~~~~~~i~~~~d~~~lyv~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~  247 (343)
                       ...+.++.++..++.......   ....+++++++++|+ +|+++..      .+.+++++.++    .....+...-.
T Consensus       104 -~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~-l~vtd~~~~~~~~~g~v~~~~~dg----~~~~~~~~~~~  177 (319)
T d2dg1a1         104 -KSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDF----RTVTPIIQNIS  177 (319)
T ss_dssp             -SSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTS----CCEEEEEEEES
T ss_pred             -ccceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccc-eeecccccccccCcceeEEEeccc----ceeEEEeeccc
Confidence             114568999988777655443   245689999999996 8998754      34688888765    23333333223


Q ss_pred             CCCceeeCCCCC-EEEEeccCCCccccccccccccccCCCcccCCCeEEEEC--CCCCEEEEe-----eCCCCCccCCce
Q 019290          248 FPDNIKSDSKGE-FWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFD--VNGNVVDVL-----DGNEGNTLNSVS  319 (343)
Q Consensus       248 ~p~~i~~d~~G~-lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d--~~g~~~~~~-----~~~~~~~~~~~~  319 (343)
                      .|++++++++|+ ||+++..                        .+.|++|+  .++......     ....+  ...+.
T Consensus       178 ~pnGia~s~dg~~lyvad~~------------------------~~~I~~~d~~~~g~~~~~~~~~~~~~~~~--~~~Pd  231 (319)
T d2dg1a1         178 VANGIALSTDEKVLWVTETT------------------------ANRLHRIALEDDGVTIQPFGATIPYYFTG--HEGPD  231 (319)
T ss_dssp             SEEEEEECTTSSEEEEEEGG------------------------GTEEEEEEECTTSSSEEEEEEEEEEECCS--SSEEE
T ss_pred             eeeeeeeccccceEEEeccc------------------------CCceEEEEEcCCCceeccccceeeeccCC--cccee
Confidence            589999999985 8999876                        34677775  455432221     11111  12244


Q ss_pred             eEEEe-CCEEEEecCCCCeEEEEcC
Q 019290          320 EVQEY-GEYLYTGSSVQPYVVVIKA  343 (343)
Q Consensus       320 ~~~~~-~g~l~i~~~~~~~i~~~~~  343 (343)
                      .+..+ +|+||++....++|.+|++
T Consensus       232 Gl~vD~~G~l~Va~~~~g~V~~~~p  256 (319)
T d2dg1a1         232 SCCIDSDDNLYVAMYGQGRVLVFNK  256 (319)
T ss_dssp             EEEEBTTCCEEEEEETTTEEEEECT
T ss_pred             eeeEcCCCCEEEEEcCCCEEEEECC
Confidence            55555 8999999999999999985

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.56  E-value=9.6e-13  Score=113.28  Aligned_cols=202  Identities=18%  Similarity=0.291  Sum_probs=138.2

Q ss_pred             CcCCeeeEEEeCCCCeEEEEeCCC-eEEEEeCCCCeEEEcccccC-CCCccCcceeEEeCCCCeEEEEeCCcccccccce
Q 019290           94 LCGRPLGIKFNPVTCDLYIADAYF-GLMVVGPNGGQAQQLASSAG-GIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYF  171 (343)
Q Consensus        94 ~~~~p~gi~~~~~~~~l~v~~~~~-gi~~~d~~~~~~~~~~~~~~-~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~  171 (343)
                      .+..|.|+++++ +++|||+|..+ .|.++|+++.-...+..... ......+.+++++...+..+++...         
T Consensus        21 ~f~~P~gvavd~-dg~i~VaD~~n~rI~v~d~~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~---------   90 (279)
T d1q7fa_          21 QFTEPSGVAVNA-QNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERS---------   90 (279)
T ss_dssp             CBSCEEEEEECT-TCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECG---------
T ss_pred             eECCccEEEEcC-CCCEEEEECCCCEEEEEeCCCCEEEEecccCCCcccccccccccccccccccceeccC---------
Confidence            356799999998 89999998654 49999988443433322211 1123467788877644666665443         


Q ss_pred             eeeeecCCCceEEEEeCCCCceEEee-cCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeec--CCCC
Q 019290          172 MSIATGDRSGRLLKYDPLKKNVTVMY-NGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAE--MPRF  248 (343)
Q Consensus       172 ~~~~~~~~~~~v~~~d~~~~~~~~~~-~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~  248 (343)
                             ....|.+++..+.....+. ..+..|.++++++++. +|+++...+++.+++.++..    ...+..  ....
T Consensus        91 -------~~~~i~~~~~~g~~~~~~~~~~~~~p~~~avd~~G~-i~v~~~~~~~~~~~~~~g~~----~~~~g~~~~~~~  158 (279)
T d1q7fa_          91 -------PTHQIQIYNQYGQFVRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQNGNV----LHKFGCSKHLEF  158 (279)
T ss_dssp             -------GGCEEEEECTTSCEEEEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTTSCE----EEEEECTTTCSS
T ss_pred             -------CccccccccccccceeecCCCcccccceeccccCCc-EEEEeeccceeeEeccCCce----eecccccccccc
Confidence                   1456888887644444332 3456789999998876 78888888999999876622    222211  1234


Q ss_pred             CCceeeCCCCCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECCCCCEEEEeeCCCCCccCCceeEEEe-CCE
Q 019290          249 PDNIKSDSKGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEGNTLNSVSEVQEY-GEY  327 (343)
Q Consensus       249 p~~i~~d~~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~-~g~  327 (343)
                      |.++++|++|++|+++..                        .+.|+.+|++|+.+..+..+ + ....+..+..+ +|+
T Consensus       159 ~~~i~~d~~g~i~v~d~~------------------------~~~V~~~d~~G~~~~~~g~~-g-~~~~P~giavD~~G~  212 (279)
T d1q7fa_         159 PNGVVVNDKQEIFISDNR------------------------AHCVKVFNYEGQYLRQIGGE-G-ITNYPIGVGINSNGE  212 (279)
T ss_dssp             EEEEEECSSSEEEEEEGG------------------------GTEEEEEETTCCEEEEESCT-T-TSCSEEEEEECTTCC
T ss_pred             cceeeeccceeEEeeecc------------------------ccceeeeecCCceeeeeccc-c-cccCCcccccccCCe
Confidence            778999999999999987                        45889999999988777643 2 34556665555 889


Q ss_pred             EEEecCCCC-eEEEEcC
Q 019290          328 LYTGSSVQP-YVVVIKA  343 (343)
Q Consensus       328 l~i~~~~~~-~i~~~~~  343 (343)
                      ||++....+ +|.++++
T Consensus       213 i~Vad~~~~~~v~~f~~  229 (279)
T d1q7fa_         213 ILIADNHNNFNLTIFTQ  229 (279)
T ss_dssp             EEEEECSSSCEEEEECT
T ss_pred             EEEEECCCCcEEEEECC
Confidence            999986554 5777653

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.51  E-value=4.6e-11  Score=102.09  Aligned_cols=245  Identities=14%  Similarity=0.194  Sum_probs=163.0

Q ss_pred             ccccccccCCCCCCCceEEEcCCCCeeEE-EecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeE
Q 019290           23 SKSYQQLQLPGVVGPESLAFDCNGEGPYV-GVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGI  101 (343)
Q Consensus        23 ~~~~~~~~~~~~~~p~~l~~d~~g~~l~~-~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi  101 (343)
                      .+..++++++.  .|.++++++||+.+|+ +..++.|..||..+++...-.                    .....|.++
T Consensus        22 ~~~~~~i~~g~--~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~--------------------~~~~~~~~~   79 (301)
T d1l0qa2          22 NKVTATIPVGS--NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATV--------------------PAGSSPQGV   79 (301)
T ss_dssp             TEEEEEEECSS--SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEE--------------------ECSSSEEEE
T ss_pred             CeEEEEEECCC--CceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeee--------------------ecccccccc
Confidence            45667777765  6999999999997774 567889999999876543211                    122357899


Q ss_pred             EEeCCCCeEEEEeCCC-eEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCe-EEEEeCCcccccccceeeeeecCC
Q 019290          102 KFNPVTCDLYIADAYF-GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGI-VYFTDSSIYFQRRQYFMSIATGDR  179 (343)
Q Consensus       102 ~~~~~~~~l~v~~~~~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~-l~v~~~~~~~~~~~~~~~~~~~~~  179 (343)
                      +++++++.++++.... .+..++..+++........     ..+..+++++ +|. ++++...                 
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~-dg~~~~~~~~~-----------------  136 (301)
T d1l0qa2          80 AVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-----KSPLGLALSP-DGKKLYVTNNG-----------------  136 (301)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-----SSEEEEEECT-TSSEEEEEETT-----------------
T ss_pred             ccccccccccccccccceeeecccccceeeeecccc-----ccceEEEeec-CCCeeeeeecc-----------------
Confidence            9998555677775544 3778888877655433221     3467788888 465 4444432                 


Q ss_pred             CceEEEEeCCCCceEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCC
Q 019290          180 SGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGE  259 (343)
Q Consensus       180 ~~~v~~~d~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~  259 (343)
                      ...+..++..++...........+..++++++++.+|++....+.+..++....    ...........|.+++++++|+
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~g~  212 (301)
T d1l0qa2         137 DKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN----SVIDTVKVEAAPSGIAVNPEGT  212 (301)
T ss_dssp             TTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT----EEEEEEECSSEEEEEEECTTSS
T ss_pred             ccceeeeeccccceeeecccCCCceEEEeeccccceeeecccccccccccccce----eeeecccccCCcceeecccccc
Confidence            445777887777665555555678899999999999999887777777765442    1111122334477889999885


Q ss_pred             -EEEEeccCCCccccccccccccccCCCcccCCCeEEEECC-CCCEEEEeeCCCCCccCCceeEEE--eCCEEEEecCCC
Q 019290          260 -FWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDV-NGNVVDVLDGNEGNTLNSVSEVQE--YGEYLYTGSSVQ  335 (343)
Q Consensus       260 -lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~--~~g~l~i~~~~~  335 (343)
                       +|++... ..                     .+.|..+|. +++.+..+....     .+..+..  ++.+||++....
T Consensus       213 ~~~v~~~~-~~---------------------~~~v~v~D~~t~~~~~~~~~~~-----~~~~va~spdg~~l~va~~~~  265 (301)
T d1l0qa2         213 KAYVTNVD-KY---------------------FNTVSMIDTGTNKITARIPVGP-----DPAGIAVTPDGKKVYVALSFC  265 (301)
T ss_dssp             EEEEEEEC-SS---------------------CCEEEEEETTTTEEEEEEECCS-----SEEEEEECTTSSEEEEEETTT
T ss_pred             cccccccc-ce---------------------eeeeeeeecCCCeEEEEEcCCC-----CEEEEEEeCCCCEEEEEECCC
Confidence             5566544 21                     246888887 466666665422     2344443  356799999999


Q ss_pred             CeEEEEcC
Q 019290          336 PYVVVIKA  343 (343)
Q Consensus       336 ~~i~~~~~  343 (343)
                      +.|.++|.
T Consensus       266 ~~i~v~D~  273 (301)
T d1l0qa2         266 NTVSVIDT  273 (301)
T ss_dssp             TEEEEEET
T ss_pred             CeEEEEEC
Confidence            99998873

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.38  E-value=3.1e-11  Score=104.80  Aligned_cols=187  Identities=14%  Similarity=0.091  Sum_probs=125.9

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCC--CCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEE
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAAN--SGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIA  113 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~  113 (343)
                      .|.+++++++|+++.+...++.+++++..+  +....+..                  ......++++++++ ++++|++
T Consensus        69 ~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~n~i~~~~-~g~~~v~  129 (302)
T d2p4oa1          69 KVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLT------------------LPDAIFLNGITPLS-DTQYLTA  129 (302)
T ss_dssp             EEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEE------------------CTTCSCEEEEEESS-SSEEEEE
T ss_pred             CcceEEEcCCCCeEEEecCCceEEEEEecccccceeeccc------------------cCCccccceeEEcc-CCCEEee
Confidence            689999999999444556667677766533  33333321                  12334588999998 8999999


Q ss_pred             eCCC-eEEEEeCCCCeEEEccccc------CCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEE
Q 019290          114 DAYF-GLMVVGPNGGQAQQLASSA------GGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKY  186 (343)
Q Consensus       114 ~~~~-gi~~~d~~~~~~~~~~~~~------~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~  186 (343)
                      +... .+++++++++.........      .......++++..+.  +.+|+++..                 .+.|+++
T Consensus       130 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~--~~l~~~~~~-----------------~~~i~~~  190 (302)
T d2p4oa1         130 DSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG--NFLYVSNTE-----------------KMLLLRI  190 (302)
T ss_dssp             ETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET--TEEEEEETT-----------------TTEEEEE
T ss_pred             ccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC--CceeeecCC-----------------CCeEEec
Confidence            8765 4999999887655432211      112234678888886  689998876                 6789999


Q ss_pred             eCCCCceE---EeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecC--C-CCCCceeeC---CC
Q 019290          187 DPLKKNVT---VMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEM--P-RFPDNIKSD---SK  257 (343)
Q Consensus       187 d~~~~~~~---~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~-~~p~~i~~d---~~  257 (343)
                      +.......   ........+.+++++++|. ||+++...++|++++.++..     ..+...  . ..|.+++++   +|
T Consensus       191 ~~~~~~~~~~~~~~~~~~~pdgia~d~dG~-l~va~~~~~~V~~i~p~G~~-----~~~~~~~~~~~~pt~vafg~~~~D  264 (302)
T d2p4oa1         191 PVDSTDKPGEPEIFVEQTNIDDFAFDVEGN-LYGATHIYNSVVRIAPDRST-----TIIAQAEQGVIGSTAVAFGQTEGD  264 (302)
T ss_dssp             EBCTTSCBCCCEEEEESCCCSSEEEBTTCC-EEEECBTTCCEEEECTTCCE-----EEEECGGGTCTTEEEEEECCSTTT
T ss_pred             cccccccccccccccCCCCCcceEECCCCC-EEEEEcCCCcEEEECCCCCE-----EEEEecCCCCCCceEEEEcCCCCC
Confidence            86543211   1223456789999999986 89998888999999877632     222221  1 136778884   35


Q ss_pred             C-CEEEEecc
Q 019290          258 G-EFWIAMNS  266 (343)
Q Consensus       258 G-~lwi~~~~  266 (343)
                      + .|||+++.
T Consensus       265 ~~~Lyvtt~~  274 (302)
T d2p4oa1         265 CTAIYVVTNG  274 (302)
T ss_dssp             TTEEEEEECT
T ss_pred             CCEEEEECCC
Confidence            4 59999876

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.37  E-value=2.7e-11  Score=104.88  Aligned_cols=186  Identities=10%  Similarity=0.013  Sum_probs=124.3

Q ss_pred             eeEEEeCCCCeEEEEeCCC-eEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeec
Q 019290           99 LGIKFNPVTCDLYIADAYF-GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATG  177 (343)
Q Consensus        99 ~gi~~~~~~~~l~v~~~~~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~  177 (343)
                      .|...+++++.||+.|... .|+++|+++++.+.+. ..     ..+..++.++ +|++|++..                
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~~~-~~-----~~~~~i~~~~-dg~l~va~~----------------   77 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRKTVHA-LP-----FMGSALAKIS-DSKQLIASD----------------   77 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEE-CS-----SCEEEEEEEE-TTEEEEEET----------------
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeEEEEE-CC-----CCcEEEEEec-CCCEEEEEe----------------
Confidence            5667787689999998654 5999999999876542 21     2467889988 599999763                


Q ss_pred             CCCceEEEEeCCCCceEEeec-----CCCCcceeEEecCCCEEEEEEcC------CCeEEEEEccCccccccceeeecCC
Q 019290          178 DRSGRLLKYDPLKKNVTVMYN-----GLSFPNGVALSNNNSFLLLAESA------TLKILRFWLQGERTTYTPQLFAEMP  246 (343)
Q Consensus       178 ~~~~~v~~~d~~~~~~~~~~~-----~~~~~~~i~~~~d~~~lyv~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~  246 (343)
                         .+++++|+++++.+.+..     ....++.+.++++|+ +|++...      .+.+++++  .    ++...+...-
T Consensus        78 ---~gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~-iw~~~~~~~~~~~~g~l~~~~--~----g~~~~~~~~~  147 (295)
T d2ghsa1          78 ---DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGA-LWIGTMGRKAETGAGSIYHVA--K----GKVTKLFADI  147 (295)
T ss_dssp             ---TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSC-EEEEEEETTCCTTCEEEEEEE--T----TEEEEEEEEE
T ss_pred             ---CccEEeecccceeeEEeeeecCCCcccceeeEECCCCC-EEEEeccccccccceeEeeec--C----CcEEEEeecc
Confidence               369999999998876642     123478899999986 7777542      33455544  2    1222222222


Q ss_pred             CCCCceeeCCCCC-EEEEeccCCCccccccccccccccCCCcccCCCeEEEECC--CCC-----EEEEeeCCCCCccCCc
Q 019290          247 RFPDNIKSDSKGE-FWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDV--NGN-----VVDVLDGNEGNTLNSV  318 (343)
Q Consensus       247 ~~p~~i~~d~~G~-lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~--~g~-----~~~~~~~~~~~~~~~~  318 (343)
                      ..|++++.+++++ +|+++..                        .+.|++++.  ++.     ...... ..+. ...+
T Consensus       148 ~~~Ng~~~s~d~~~l~~~dt~------------------------~~~I~~~~~d~~~~~~~~~~~~~~~-~~~~-~g~p  201 (295)
T d2ghsa1         148 SIPNSICFSPDGTTGYFVDTK------------------------VNRLMRVPLDARTGLPTGKAEVFID-STGI-KGGM  201 (295)
T ss_dssp             SSEEEEEECTTSCEEEEEETT------------------------TCEEEEEEBCTTTCCBSSCCEEEEE-CTTS-SSEE
T ss_pred             CCcceeeecCCCceEEEeecc------------------------cceeeEeeecccccccccceEEEec-cCcc-cccc
Confidence            3588999999885 8888876                        346777653  321     222222 2221 2234


Q ss_pred             eeEEEe-CCEEEEecCCCCeEEEEcC
Q 019290          319 SEVQEY-GEYLYTGSSVQPYVVVIKA  343 (343)
Q Consensus       319 ~~~~~~-~g~l~i~~~~~~~i~~~~~  343 (343)
                      ..+..+ +|+||++......|.+|++
T Consensus       202 dG~~vD~~GnlWva~~~~g~V~~~dp  227 (295)
T d2ghsa1         202 DGSVCDAEGHIWNARWGEGAVDRYDT  227 (295)
T ss_dssp             EEEEECTTSCEEEEEETTTEEEEECT
T ss_pred             cceEEcCCCCEEeeeeCCCceEEecC
Confidence            455555 8999999999999999986

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.24  E-value=4.1e-09  Score=93.70  Aligned_cols=261  Identities=14%  Similarity=0.157  Sum_probs=140.5

Q ss_pred             ccccccCCCCCCCceEEEcCCCCeeEEEecCCEEEEE--EcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEE
Q 019290           25 SYQQLQLPGVVGPESLAFDCNGEGPYVGVSDGRILKW--KAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIK  102 (343)
Q Consensus        25 ~~~~~~~~~~~~p~~l~~d~~g~~l~~~~~~g~i~~~--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~  102 (343)
                      ..+...+|....|..|+++++++.+|+... +.+..|  +.+++.......                   .....|.+++
T Consensus        30 ~~~~~~~~~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~-------------------~~~~~p~~v~   89 (365)
T d1jofa_          30 LIKRTEIPQDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASH-------------------PIGGHPRAND   89 (365)
T ss_dssp             EEEEEECCTTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEE-------------------ECCSSGGGGC
T ss_pred             EeeeeeccCCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeee-------------------cCCCCcEEEE
Confidence            345556775556789999999998887644 445544  554432222111                   1122466667


Q ss_pred             EeCCCCeEEEEeCC--Ce-EEEEe--CCC-----------CeEEEcccccCCCCccCcceeEEeCCCCe-EEEEeCCccc
Q 019290          103 FNPVTCDLYIADAY--FG-LMVVG--PNG-----------GQAQQLASSAGGIPFRFTNDLDIDPNTGI-VYFTDSSIYF  165 (343)
Q Consensus       103 ~~~~~~~l~v~~~~--~g-i~~~d--~~~-----------~~~~~~~~~~~~~~~~~~~~i~~d~~dg~-l~v~~~~~~~  165 (343)
                      ++++++.+|++...  .+ ++.+.  ...           ++..........+...++++++++| ||+ +|+++.+   
T Consensus        90 ~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sP-dG~~l~v~d~g---  165 (365)
T d1jofa_          90 ADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDP-TETYLYSADLT---  165 (365)
T ss_dssp             TTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETT---
T ss_pred             ECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECC-CCCEEEEeeCC---
Confidence            77634455665321  11 33221  111           1111111111112235688999999 565 8887765   


Q ss_pred             ccccceeeeeecCCCceEEEEeC-CCCceEEe-----ecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCcccc--c
Q 019290          166 QRRQYFMSIATGDRSGRLLKYDP-LKKNVTVM-----YNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTT--Y  237 (343)
Q Consensus       166 ~~~~~~~~~~~~~~~~~v~~~d~-~~~~~~~~-----~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~--~  237 (343)
                                    ...|++|+. ..+.....     ......|..++++++++.+|++....+.|.+|+++.....  .
T Consensus       166 --------------~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~  231 (365)
T d1jofa_         166 --------------ANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVY  231 (365)
T ss_dssp             --------------TTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred             --------------CCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEE
Confidence                          456666642 23433221     1235678999999999999999999999999998754220  0


Q ss_pred             cceeeecC-C-------------CCCCceeeCCCCC-EEEEeccCCCccccccccccccccCCCcccCCCeEEEECCCCC
Q 019290          238 TPQLFAEM-P-------------RFPDNIKSDSKGE-FWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGN  302 (343)
Q Consensus       238 ~~~~~~~~-~-------------~~p~~i~~d~~G~-lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~  302 (343)
                      ........ .             ..+..+.++++|+ +|++.........          .       .-..++++.++.
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~----------~-------~i~~~~~~~~g~  294 (365)
T d1jofa_         232 THHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQ----------G-------YIAGFKLRDCGS  294 (365)
T ss_dssp             EEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSC----------C-------EEEEEEECTTSC
T ss_pred             EeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccc----------e-------EEEEEEecCCCc
Confidence            11111000 0             0133578899996 4555432111000          0       014455666665


Q ss_pred             EEEE---eeCCCCCccCCceeEEE---eCCEEEEecCCCCeEEEEc
Q 019290          303 VVDV---LDGNEGNTLNSVSEVQE---YGEYLYTGSSVQPYVVVIK  342 (343)
Q Consensus       303 ~~~~---~~~~~~~~~~~~~~~~~---~~g~l~i~~~~~~~i~~~~  342 (343)
                      ....   ...+..  -..+..+..   ++..||+++..++.|.+|+
T Consensus       295 ~~~~~~~~~~~~~--G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~  338 (365)
T d1jofa_         295 IEKQLFLSPTPTS--GGHSNAVSPCPWSDEWMAITDDQEGWLEIYR  338 (365)
T ss_dssp             EEEEEEEEECSSC--CTTCCCEEECTTCTTEEEEECSSSCEEEEEE
T ss_pred             eeeEeEeeEEEcC--CCCccEEEecCCCCCEEEEEeCCCCeEEEEE
Confidence            4322   222211  112222222   3567999999999999875

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.24  E-value=4.1e-09  Score=91.04  Aligned_cols=253  Identities=15%  Similarity=0.193  Sum_probs=143.7

Q ss_pred             cccccccCCCCCCCceEEEcCCCCeeEEEe-cCCEEEEEEcCC--CCeEEeeecCCCccccccCCCCCcccCCCcCCeee
Q 019290           24 KSYQQLQLPGVVGPESLAFDCNGEGPYVGV-SDGRILKWKAAN--SGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLG  100 (343)
Q Consensus        24 ~~~~~~~~~~~~~p~~l~~d~~g~~l~~~~-~~g~i~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g  100 (343)
                      ..++.++.++  .|.+|+++|||+.||++. .+++|..|+...  ........                  ......|.+
T Consensus        28 ~~~~~~~~~~--~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~------------------~~~~~~p~~   87 (333)
T d1ri6a_          28 TLTQVVDVPG--QVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAE------------------SALPGSLTH   87 (333)
T ss_dssp             EEEEEEECSS--CCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEE------------------EECSSCCSE
T ss_pred             EEEEEEcCCC--CEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeee------------------cccCCCceE
Confidence            4455667775  799999999999888665 467787776543  23222211                  112235789


Q ss_pred             EEEeCCCCeEEEEeCCCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCe-EEEEeCCcccccccceeeeeecC
Q 019290          101 IKFNPVTCDLYIADAYFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGI-VYFTDSSIYFQRRQYFMSIATGD  178 (343)
Q Consensus       101 i~~~~~~~~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~-l~v~~~~~~~~~~~~~~~~~~~~  178 (343)
                      ++++++++.||+++...+ +..++.+.............  ...++++.+++ |++ +++++..                
T Consensus        88 l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~--~~~~~~v~~s~-d~~~~~~~~~~----------------  148 (333)
T d1ri6a_          88 ISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG--LDGCHSANISP-DNRTLWVPALK----------------  148 (333)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC--CTTBCCCEECT-TSSEEEEEEGG----------------
T ss_pred             EEEcCCCCEEeecccCCCceeeeccccccceecccccCC--CccceEEEeee-cceeeeccccc----------------
Confidence            999996667898875443 66666655443333222111  24577889998 455 5554433                


Q ss_pred             CCceEEEEeCCCCc-eEE------eecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccc-cccceeeecCC----
Q 019290          179 RSGRLLKYDPLKKN-VTV------MYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERT-TYTPQLFAEMP----  246 (343)
Q Consensus       179 ~~~~v~~~d~~~~~-~~~------~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~----  246 (343)
                       ...+..++..... ...      .......|..+++++++..+|++....+....++...... +.........+    
T Consensus       149 -~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  227 (333)
T d1ri6a_         149 -QDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFS  227 (333)
T ss_dssp             -GTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCC
T ss_pred             -cceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCC
Confidence             2345555543221 111      1123455788999999999999988888877777653221 01111111111    


Q ss_pred             --CCCCceeeCCCCCE-EEEeccCCCccccccccccccccCCCcccCCCeEEEECCCCCEEEEee-CCCCCccCCceeEE
Q 019290          247 --RFPDNIKSDSKGEF-WIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLD-GNEGNTLNSVSEVQ  322 (343)
Q Consensus       247 --~~p~~i~~d~~G~l-wi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~-~~~~~~~~~~~~~~  322 (343)
                        ..+..++++++|+. |++... ....                     .++.++.++....... .+.+   ..+..+.
T Consensus       228 ~~~~~~~~~~s~d~~~~~~~~~~-~~~~---------------------~~~~~~~~~~~~~~~~~~~~~---~~p~~~a  282 (333)
T d1ri6a_         228 DTRWAADIHITPDGRHLYACDRT-ASLI---------------------TVFSVSEDGSVLSKEGFQPTE---TQPRGFN  282 (333)
T ss_dssp             SCCCEEEEEECTTSSEEEEEETT-TTEE---------------------EEEEECTTSCCEEEEEEEECS---SSCCCEE
T ss_pred             ccccceeEEEecccCceeeeccc-CCeE---------------------EEEEEcCCCCEEEEEEEeCCC---CCeeEEE
Confidence              12344678888864 544433 2211                     5556666655433322 1111   1222222


Q ss_pred             --EeCCEEEEecCCCCeEEEE
Q 019290          323 --EYGEYLYTGSSVQPYVVVI  341 (343)
Q Consensus       323 --~~~g~l~i~~~~~~~i~~~  341 (343)
                        +++..||+++...+.|.+|
T Consensus       283 ~spDGk~l~va~~~~~~v~v~  303 (333)
T d1ri6a_         283 VDHSGKYLIAAGQKSHHISVY  303 (333)
T ss_dssp             ECTTSSEEEEECTTTCEEEEE
T ss_pred             EeCCCCEEEEEECCCCeEEEE
Confidence              3466699999888888776

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.20  E-value=1.8e-08  Score=85.46  Aligned_cols=171  Identities=18%  Similarity=0.251  Sum_probs=114.9

Q ss_pred             eE-EEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCCC-eEEEEeCCC
Q 019290           49 PY-VGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYF-GLMVVGPNG  126 (343)
Q Consensus        49 l~-~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~~-gi~~~d~~~  126 (343)
                      +| ++..++.|..+|.+++++..-.                    .....|.+++++++++.||++.... .|..+|.++
T Consensus         4 ~yV~~~~~~~v~v~D~~t~~~~~~i--------------------~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t   63 (301)
T d1l0qa2           4 AYIANSESDNISVIDVTSNKVTATI--------------------PVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTAT   63 (301)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEE--------------------ECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTT
T ss_pred             EEEEECCCCEEEEEECCCCeEEEEE--------------------ECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCC
Confidence            45 4567889999999887644321                    1224689999999555688886544 499999998


Q ss_pred             CeEEEcccccCCCCccCcceeEEeCCCCe-EEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEeecCCCCcce
Q 019290          127 GQAQQLASSAGGIPFRFTNDLDIDPNTGI-VYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSFPNG  205 (343)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~i~~d~~dg~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~  205 (343)
                      ++........     ..+.++++++. +. ++++...                 ...+..++..+++..........+..
T Consensus        64 ~~~~~~~~~~-----~~~~~~~~~~~-~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (301)
T d1l0qa2          64 NNVIATVPAG-----SSPQGVAVSPD-GKQVYVTNMA-----------------SSTLSVIDTTSNTVAGTVKTGKSPLG  120 (301)
T ss_dssp             TEEEEEEECS-----SSEEEEEECTT-SSEEEEEETT-----------------TTEEEEEETTTTEEEEEEECSSSEEE
T ss_pred             Cceeeeeecc-----ccccccccccc-cccccccccc-----------------cceeeecccccceeeeeccccccceE
Confidence            8754432221     34678999984 65 5554443                 45677888877766555555567888


Q ss_pred             eEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCC-EEEEecc
Q 019290          206 VALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGE-FWIAMNS  266 (343)
Q Consensus       206 i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-lwi~~~~  266 (343)
                      ++++++++.++++......+..++......   ...+ .....|..++.+++++ +|++...
T Consensus       121 ~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  178 (301)
T d1l0qa2         121 LALSPDGKKLYVTNNGDKTVSVINTVTKAV---INTV-SVGRSPKGIAVTPDGTKVYVANFD  178 (301)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEETTTTEE---EEEE-ECCSSEEEEEECTTSSEEEEEETT
T ss_pred             EEeecCCCeeeeeeccccceeeeeccccce---eeec-ccCCCceEEEeeccccceeeeccc
Confidence            999999999999888888888888654221   1122 2223366778888775 5666544

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=1.2e-07  Score=82.31  Aligned_cols=233  Identities=10%  Similarity=0.017  Sum_probs=141.9

Q ss_pred             CceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCC
Q 019290           37 PESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAY  116 (343)
Q Consensus        37 p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~  116 (343)
                      ..++++.++|+.+.++..++.|..||............                 .........+.+++++..+..+...
T Consensus       100 I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~-----------------~~~~~~v~~~~~~~~~~~l~s~~~d  162 (337)
T d1gxra_         100 IRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAEL-----------------TSSAPACYALAISPDSKVCFSCCSD  162 (337)
T ss_dssp             EEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEE-----------------ECSSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEEEEEcCCCCEEEEeeccccccccccccccccccccc-----------------ccccccccccccccccccccccccc
Confidence            46899999999888888999999999765432222110                 0112234677888834445555434


Q ss_pred             CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEe
Q 019290          117 FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVM  196 (343)
Q Consensus       117 ~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~  196 (343)
                      ..+..++..+++........    ...+..+++.+. +...+....                 .+.+..+|..+++....
T Consensus       163 ~~i~~~~~~~~~~~~~~~~~----~~~v~~l~~s~~-~~~~~~~~~-----------------d~~v~i~d~~~~~~~~~  220 (337)
T d1gxra_         163 GNIAVWDLHNQTLVRQFQGH----TDGASCIDISND-GTKLWTGGL-----------------DNTVRSWDLREGRQLQQ  220 (337)
T ss_dssp             SCEEEEETTTTEEEEEECCC----SSCEEEEEECTT-SSEEEEEET-----------------TSEEEEEETTTTEEEEE
T ss_pred             cccccccccccccccccccc----cccccccccccc-ccccccccc-----------------cccccccccccceeecc
Confidence            45999999887755432221    134678888884 654443221                 45688888877765443


Q ss_pred             ecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEeccCCCccccccc
Q 019290          197 YNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNSARGKIESNKK  276 (343)
Q Consensus       197 ~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~~~~~~~~~~~~  276 (343)
                      .........++++++++.++++ ..++.+..|++.....    ............++++++|++.++...          
T Consensus       221 ~~~~~~i~~l~~~~~~~~l~~~-~~d~~i~i~d~~~~~~----~~~~~~~~~i~~v~~s~~g~~l~s~s~----------  285 (337)
T d1gxra_         221 HDFTSQIFSLGYCPTGEWLAVG-MESSNVEVLHVNKPDK----YQLHLHESCVLSLKFAYCGKWFVSTGK----------  285 (337)
T ss_dssp             EECSSCEEEEEECTTSSEEEEE-ETTSCEEEEETTSSCE----EEECCCSSCEEEEEECTTSSEEEEEET----------
T ss_pred             cccccceEEEEEccccccccee-cccccccccccccccc----ccccccccccceEEECCCCCEEEEEeC----------
Confidence            3334556788999998876654 4578999999875322    111112222456778999988777654          


Q ss_pred             cccccccCCCcccCCCeEEEECC-CCCEEEEeeCCCCCccCCceeEEEe-CCEEEEecCCCCeEEEEc
Q 019290          277 TAFCEETAKPWFLRDPVGVKFDV-NGNVVDVLDGNEGNTLNSVSEVQEY-GEYLYTGSSVQPYVVVIK  342 (343)
Q Consensus       277 ~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~~~~i~~~~  342 (343)
                                    .+.|..+|. .++.+......     ..+..+... ++++.+++.....|.+++
T Consensus       286 --------------Dg~i~iwd~~~~~~~~~~~~~-----~~v~~~~~s~d~~~l~t~s~D~~I~vWd  334 (337)
T d1gxra_         286 --------------DNLLNAWRTPYGASIFQSKES-----SSVLSCDISVDDKYIVTGSGDKKATVYE  334 (337)
T ss_dssp             --------------TSEEEEEETTTCCEEEEEECS-----SCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred             --------------CCeEEEEECCCCCEEEEccCC-----CCEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence                          346777775 56666554422     234444444 555555555556677664

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=3.8e-07  Score=79.09  Aligned_cols=201  Identities=14%  Similarity=0.136  Sum_probs=117.2

Q ss_pred             ccccccccCCCCCCCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeE-EeeecCCCccccccCCCCCcccCCCcCCeeeE
Q 019290           23 SKSYQQLQLPGVVGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWT-EFATTAPHRAREICDGSTNTTLEPLCGRPLGI  101 (343)
Q Consensus        23 ~~~~~~~~~~~~~~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi  101 (343)
                      .+.+..+....  ...+++++++|+.+.++. +|.|..||..+.... .+..               .........+..+
T Consensus        42 ~~~~~~~~H~~--~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~---------------~~~~~h~~~I~~v  103 (337)
T d1gxra_          42 ARQINTLNHGE--VVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQ---------------LDCLNRDNYIRSC  103 (337)
T ss_dssp             EEEEEEECCSS--CCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEE---------------EECSCTTSBEEEE
T ss_pred             ceEEEECCCCC--cEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEE---------------eeecCCCCcEEEE
Confidence            34444554443  578999999999777765 788999997653211 1000               0001122346789


Q ss_pred             EEeCCCCeEEEEeCCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCc
Q 019290          102 KFNPVTCDLYIADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSG  181 (343)
Q Consensus       102 ~~~~~~~~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~  181 (343)
                      ++.++++.|.++.....|..+|......+........  ...+..+++.+ ++.+.++...                 .+
T Consensus       104 ~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~~~~~~-~~~~l~s~~~-----------------d~  163 (337)
T d1gxra_         104 KLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSS--APACYALAISP-DSKVCFSCCS-----------------DG  163 (337)
T ss_dssp             EECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECS--SSCEEEEEECT-TSSEEEEEET-----------------TS
T ss_pred             EEcCCCCEEEEeecccccccccccccccccccccccc--ccccccccccc-cccccccccc-----------------cc
Confidence            9998444555554434488888764433222111111  13456778888 4766664432                 45


Q ss_pred             eEEEEeCCCCceEEeecC-CCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCE
Q 019290          182 RLLKYDPLKKNVTVMYNG-LSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEF  260 (343)
Q Consensus       182 ~v~~~d~~~~~~~~~~~~-~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l  260 (343)
                      .+..++..+++....... ......+++++++..++++. .++.+..|++.....   ...+ ........+++++++++
T Consensus       164 ~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~-~d~~v~i~d~~~~~~---~~~~-~~~~~i~~l~~~~~~~~  238 (337)
T d1gxra_         164 NIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGG-LDNTVRSWDLREGRQ---LQQH-DFTSQIFSLGYCPTGEW  238 (337)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSEEEEEETTTTEE---EEEE-ECSSCEEEEEECTTSSE
T ss_pred             ccccccccccccccccccccccccccccccccccccccc-cccccccccccccee---eccc-ccccceEEEEEcccccc
Confidence            688888877765544332 34467888999988766654 578999999765221   1111 22333455778888877


Q ss_pred             EEEecc
Q 019290          261 WIAMNS  266 (343)
Q Consensus       261 wi~~~~  266 (343)
                      .++...
T Consensus       239 l~~~~~  244 (337)
T d1gxra_         239 LAVGME  244 (337)
T ss_dssp             EEEEET
T ss_pred             cceecc
Confidence            665444

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=98.97  E-value=1.9e-07  Score=80.13  Aligned_cols=200  Identities=10%  Similarity=0.113  Sum_probs=114.3

Q ss_pred             CCCceEEEcCCCCeeEEEe-cCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEE
Q 019290           35 VGPESLAFDCNGEGPYVGV-SDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIA  113 (343)
Q Consensus        35 ~~p~~l~~d~~g~~l~~~~-~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~  113 (343)
                      ..|.++++++||+.+|++. .++.+..++...........                 .......++++.++++++.++++
T Consensus        83 ~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~-----------------~~~~~~~~~~v~~s~d~~~~~~~  145 (333)
T d1ri6a_          83 GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVD-----------------VVEGLDGCHSANISPDNRTLWVP  145 (333)
T ss_dssp             SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEE-----------------EECCCTTBCCCEECTTSSEEEEE
T ss_pred             CCceEEEEcCCCCEEeecccCCCceeeeccccccceeccc-----------------ccCCCccceEEEeeecceeeecc
Confidence            3699999999999888765 45667666655433222211                 01223357888999855667777


Q ss_pred             eCCC-eEEEEeCCCCeEEE--cccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCC
Q 019290          114 DAYF-GLMVVGPNGGQAQQ--LASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLK  190 (343)
Q Consensus       114 ~~~~-gi~~~d~~~~~~~~--~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~  190 (343)
                      +... .+..++..+.....  ............+..+++++....+|++....               ....++.++...
T Consensus       146 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~---------------~~~~v~~~~~~~  210 (333)
T d1ri6a_         146 ALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELN---------------SSVDVWELKDPH  210 (333)
T ss_dssp             EGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTT---------------TEEEEEESSCTT
T ss_pred             ccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeecccc---------------CceEEEeecccc
Confidence            6443 47777665432111  11111112234567899998433455544331               012244443332


Q ss_pred             CceEE---e------ecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCC-E
Q 019290          191 KNVTV---M------YNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGE-F  260 (343)
Q Consensus       191 ~~~~~---~------~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-l  260 (343)
                      .....   +      ......+..++++++++.+|++....+.+..|.++.................|.++++++||+ |
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l  290 (333)
T d1ri6a_         211 GNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYL  290 (333)
T ss_dssp             SCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEE
T ss_pred             cceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEE
Confidence            22211   1      012234677889999999999988888888888765432122222222345689999999998 5


Q ss_pred             EEEecc
Q 019290          261 WIAMNS  266 (343)
Q Consensus       261 wi~~~~  266 (343)
                      |++...
T Consensus       291 ~va~~~  296 (333)
T d1ri6a_         291 IAAGQK  296 (333)
T ss_dssp             EEECTT
T ss_pred             EEEECC
Confidence            555433

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.97  E-value=6.3e-07  Score=77.11  Aligned_cols=190  Identities=11%  Similarity=-0.016  Sum_probs=112.0

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      .|..++.+++|+.+.++ .++.++.++.++.....+..                   .....+..+++++++..|..+..
T Consensus        19 ~~~~~a~~~~g~~l~~~-~~~~v~i~~~~~~~~~~~~~-------------------~H~~~v~~~~~sp~g~~latg~~   78 (311)
T d1nr0a1          19 TAVVLGNTPAGDKIQYC-NGTSVYTVPVGSLTDTEIYT-------------------EHSHQTTVAKTSPSGYYCASGDV   78 (311)
T ss_dssp             CCCCCEECTTSSEEEEE-ETTEEEEEETTCSSCCEEEC-------------------CCSSCEEEEEECTTSSEEEEEET
T ss_pred             CeEEEEEcCCCCEEEEE-eCCEEEEEECCCCceeEEEc-------------------CCCCCEEEEEEeCCCCeEecccc
Confidence            57789999999966554 56679999987654433321                   11234678999984334445544


Q ss_pred             CCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceE-
Q 019290          116 YFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVT-  194 (343)
Q Consensus       116 ~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-  194 (343)
                      ...|..+|..+++........ . ....+..+++.+ ++.++++....               ....+..++.++++.. 
T Consensus        79 dg~i~iwd~~~~~~~~~~~~~-~-~~~~v~~v~~s~-d~~~l~~~~~~---------------~~~~~~v~~~~~~~~~~  140 (311)
T d1nr0a1          79 HGNVRIWDTTQTTHILKTTIP-V-FSGPVKDISWDS-ESKRIAAVGEG---------------RERFGHVFLFDTGTSNG  140 (311)
T ss_dssp             TSEEEEEESSSTTCCEEEEEE-C-SSSCEEEEEECT-TSCEEEEEECC---------------SSCSEEEEETTTCCBCB
T ss_pred             CceEeeeeeeccccccccccc-c-ccCccccccccc-ccccccccccc---------------ccccccccccccccccc
Confidence            344888888765422111111 1 113578899999 57766644320               0122444455544432 


Q ss_pred             EeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEecc
Q 019290          195 VMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNS  266 (343)
Q Consensus       195 ~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~~  266 (343)
                      .+.........++++++++.++++....+.|..|+......   ...+.........+..+++|+++++...
T Consensus       141 ~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~---~~~~~~~~~~i~~v~~~p~~~~l~~~~~  209 (311)
T d1nr0a1         141 NLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKF---KSTFGEHTKFVHSVRYNPDGSLFASTGG  209 (311)
T ss_dssp             CCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEE---EEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             cccccccccccccccccceeeeccccccccccccccccccc---ccccccccccccccccCccccccccccc
Confidence            22223344678899999987777777788999999765211   1111111222345778999987776554

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.94  E-value=1.2e-06  Score=75.30  Aligned_cols=242  Identities=11%  Similarity=0.042  Sum_probs=141.0

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      ...++++.|+|+.+.++..++.|..||..++.......                 .......+..+++++++..+.++..
T Consensus        60 ~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~-----------------~~~~~~~v~~v~~s~d~~~l~~~~~  122 (311)
T d1nr0a1          60 QTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTT-----------------IPVFSGPVKDISWDSESKRIAAVGE  122 (311)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEE-----------------EECSSSCEEEEEECTTSCEEEEEEC
T ss_pred             CEEEEEEeCCCCeEeccccCceEeeeeeeccccccccc-----------------cccccCccccccccccccccccccc
Confidence            46788999999988888899999999987654221100                 0011234678999984344444432


Q ss_pred             C-Ce-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCe-EEEEeCCcccccccceeeeeecCCCceEEEEeCCCCc
Q 019290          116 Y-FG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGI-VYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKN  192 (343)
Q Consensus       116 ~-~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~  192 (343)
                      . .. +..++.++++......   .. ...+..+++.+ ++. ++++...                 .+.|..||.++++
T Consensus       123 ~~~~~~~v~~~~~~~~~~~l~---~h-~~~v~~v~~~~-~~~~~l~sgs~-----------------d~~i~i~d~~~~~  180 (311)
T d1nr0a1         123 GRERFGHVFLFDTGTSNGNLT---GQ-ARAMNSVDFKP-SRPFRIISGSD-----------------DNTVAIFEGPPFK  180 (311)
T ss_dssp             CSSCSEEEEETTTCCBCBCCC---CC-SSCEEEEEECS-SSSCEEEEEET-----------------TSCEEEEETTTBE
T ss_pred             ccccccccccccccccccccc---cc-ccccccccccc-cceeeeccccc-----------------ccccccccccccc
Confidence            2 22 5667777665332211   11 13478888998 465 3443322                 4568888887666


Q ss_pred             eEEeecC-CCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeee-cCCCC---CCceeeCCCCCEEEEeccC
Q 019290          193 VTVMYNG-LSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFA-EMPRF---PDNIKSDSKGEFWIAMNSA  267 (343)
Q Consensus       193 ~~~~~~~-~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~---p~~i~~d~~G~lwi~~~~~  267 (343)
                      ....... ......++++|+++.++.+ ..++.|..|+..........+... ...++   ...++++++|++.++... 
T Consensus       181 ~~~~~~~~~~~i~~v~~~p~~~~l~~~-~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~-  258 (311)
T d1nr0a1         181 FKSTFGEHTKFVHSVRYNPDGSLFAST-GGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASA-  258 (311)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEE-ETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEET-
T ss_pred             cccccccccccccccccCccccccccc-cccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeC-
Confidence            5444333 3446789999999866554 457889999976532211111100 01111   234678899987776544 


Q ss_pred             CCccccccccccccccCCCcccCCCeEEEECC-CCCEEEEeeCCCCCccCCceeEEEeCCEEEEecCCCCeEEEEcC
Q 019290          268 RGKIESNKKTAFCEETAKPWFLRDPVGVKFDV-NGNVVDVLDGNEGNTLNSVSEVQEYGEYLYTGSSVQPYVVVIKA  343 (343)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~~~~i~~~~~  343 (343)
                                             .+.|..+|. +++.+..+..... .......+...++.|+.++. ...|..+|+
T Consensus       259 -----------------------Dg~v~iwd~~t~~~~~~l~~~~~-~~~~~~~~~~~~~~l~s~s~-dG~i~~wd~  310 (311)
T d1nr0a1         259 -----------------------DKTIKIWNVATLKVEKTIPVGTR-IEDQQLGIIWTKQALVSISA-NGFINFVNP  310 (311)
T ss_dssp             -----------------------TSEEEEEETTTTEEEEEEECCSS-GGGCEEEEEECSSCEEEEET-TCCEEEEET
T ss_pred             -----------------------CCeEEEEECCCCcEEEEEECCCC-ccceEEEEEecCCEEEEEEC-CCEEEEEeC
Confidence                                   346777786 5776666654332 12233344445666766654 456666653

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.92  E-value=2.1e-07  Score=84.18  Aligned_cols=191  Identities=9%  Similarity=-0.071  Sum_probs=117.6

Q ss_pred             CCceEEEcCC-CCeeE-EEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEE
Q 019290           36 GPESLAFDCN-GEGPY-VGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIA  113 (343)
Q Consensus        36 ~p~~l~~d~~-g~~l~-~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~  113 (343)
                      .|...+.+.+ .++++ +...+|.|..+|..+++...-..                    ....|++++++++++.+|++
T Consensus        20 ~~~~~~~~~~~~~~~~v~~~d~g~v~v~D~~t~~v~~~~~--------------------~g~~~~~v~fSpDG~~l~~~   79 (432)
T d1qksa2          20 RPTQQMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLD--------------------TGYAVHISRLSASGRYLFVI   79 (432)
T ss_dssp             SCSSCCSCCCGGGEEEEEETTTTEEEEEETTTCCEEEEEE--------------------CSSCEEEEEECTTSCEEEEE
T ss_pred             CCCceeecCCCCcEEEEEEcCCCEEEEEECCCCcEEEEEe--------------------CCCCeeEEEECCCCCEEEEE
Confidence            3444445555 33333 55678899999999877654321                    11258999999977788888


Q ss_pred             eCCCeEEEEeCCCCeEEEcccccCC-CCccCcceeEEeCCCCe-EEEEeCCcccccccceeeeeecCCCceEEEEeCCCC
Q 019290          114 DAYFGLMVVGPNGGQAQQLASSAGG-IPFRFTNDLDIDPNTGI-VYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKK  191 (343)
Q Consensus       114 ~~~~gi~~~d~~~~~~~~~~~~~~~-~~~~~~~~i~~d~~dg~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~  191 (343)
                      +....+..+|.++++.+.......+ .+.....+.++.+ ||+ +|++...                 .+.|..+|.+++
T Consensus        80 s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~Sp-DG~~l~vs~~~-----------------~~~v~i~d~~t~  141 (432)
T d1qksa2          80 GRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGW-EDKYAIAGAYW-----------------PPQYVIMDGETL  141 (432)
T ss_dssp             ETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTC-TTTEEEEEEEE-----------------TTEEEEEETTTC
T ss_pred             cCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCC-CCCEEEEEcCC-----------------CCeEEEEeCccc
Confidence            6555699999887754322211111 1111222333455 565 6776543                 456888888877


Q ss_pred             ceEEeec------------CCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCC
Q 019290          192 NVTVMYN------------GLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGE  259 (343)
Q Consensus       192 ~~~~~~~------------~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~  259 (343)
                      +......            ......++++++++..++++....+.|+.++...... .....+ .....|.+++++++|+
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~-~~~~~i-~~g~~~~~~~~spdg~  219 (432)
T d1qksa2         142 EPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNN-LKTTEI-SAERFLHDGGLDGSHR  219 (432)
T ss_dssp             CEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSE-EEEEEE-ECCSSEEEEEECTTSC
T ss_pred             cceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCc-ceEEEE-cccCccccceECCCCC
Confidence            7643221            1123456788999999999988899999998764222 111122 2333578899999997


Q ss_pred             E-EEEecc
Q 019290          260 F-WIAMNS  266 (343)
Q Consensus       260 l-wi~~~~  266 (343)
                      . +++...
T Consensus       220 ~~~va~~~  227 (432)
T d1qksa2         220 YFITAANA  227 (432)
T ss_dssp             EEEEEEGG
T ss_pred             EEEEeccc
Confidence            4 555544

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.92  E-value=8.8e-08  Score=84.82  Aligned_cols=210  Identities=14%  Similarity=0.106  Sum_probs=111.9

Q ss_pred             CCceEEEcCCCCeeEEEe---cCCEEEEEEc--CCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeE
Q 019290           36 GPESLAFDCNGEGPYVGV---SDGRILKWKA--ANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDL  110 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~---~~g~i~~~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l  110 (343)
                      .|..++++++|+.+|+..   ..+.++.+..  .......+............    ..........++++.++++++.+
T Consensus        84 ~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~q~~~h~h~v~~sPdG~~l  159 (365)
T d1jofa_          84 HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNV----QNYEYQENTGIHGMVFDPTETYL  159 (365)
T ss_dssp             SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEE----EEEECCTTCCEEEEEECTTSSEE
T ss_pred             CcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcc----cCcccCCCCcceEEEECCCCCEE
Confidence            699999999998666543   2345554432  11111111111100000000    00001223357999999966679


Q ss_pred             EEEeCCC-eEEEEeC-CCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeC
Q 019290          111 YIADAYF-GLMVVGP-NGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDP  188 (343)
Q Consensus       111 ~v~~~~~-gi~~~d~-~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~  188 (343)
                      |+++.+. .|+.++. .+++...........+...|..++++++...+|+++..                 .+.|..|+.
T Consensus       160 ~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~-----------------~~~V~v~~~  222 (365)
T d1jofa_         160 YSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEA-----------------GNRICEYVI  222 (365)
T ss_dssp             EEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETT-----------------TTEEEEEEE
T ss_pred             EEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccC-----------------CCEEEEEEe
Confidence            9998654 4766653 23444333222222233578999999953347776644                 445655554


Q ss_pred             CCCceE---Ee-----e------------cCCCCcceeEEecCCCEEEEEEcCCC-----eEEEEEccCccccccceeee
Q 019290          189 LKKNVT---VM-----Y------------NGLSFPNGVALSNNNSFLLLAESATL-----KILRFWLQGERTTYTPQLFA  243 (343)
Q Consensus       189 ~~~~~~---~~-----~------------~~~~~~~~i~~~~d~~~lyv~~~~~~-----~i~~~~~~~~~~~~~~~~~~  243 (343)
                      +.+...   ..     .            .....+..++++|||++||+++...+     .|..|..+....+.....+.
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~  302 (365)
T d1jofa_         223 DPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLS  302 (365)
T ss_dssp             CTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEE
T ss_pred             cCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEee
Confidence            333211   10     0            00112457899999999999975433     38778776433212222222


Q ss_pred             c---CCCCCCceeeCC-CCC-EEEEecc
Q 019290          244 E---MPRFPDNIKSDS-KGE-FWIAMNS  266 (343)
Q Consensus       244 ~---~~~~p~~i~~d~-~G~-lwi~~~~  266 (343)
                      .   ....|.++.+++ +|+ |+++...
T Consensus       303 ~~~~~G~~p~~i~~~p~~G~~l~va~~~  330 (365)
T d1jofa_         303 PTPTSGGHSNAVSPCPWSDEWMAITDDQ  330 (365)
T ss_dssp             ECSSCCTTCCCEEECTTCTTEEEEECSS
T ss_pred             EEEcCCCCccEEEecCCCCCEEEEEeCC
Confidence            1   224699999987 787 5555544

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=98.88  E-value=1.9e-07  Score=80.35  Aligned_cols=171  Identities=13%  Similarity=0.099  Sum_probs=93.3

Q ss_pred             ccccccccCCCCCCCceEEEcCCCCeeEEE-ecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeE
Q 019290           23 SKSYQQLQLPGVVGPESLAFDCNGEGPYVG-VSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGI  101 (343)
Q Consensus        23 ~~~~~~~~~~~~~~p~~l~~d~~g~~l~~~-~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi  101 (343)
                      .+.++.+.+|....|.++++++||+.+|+. ..++.|+.||..+++...-.......             ......|.++
T Consensus        28 ~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~-------------~~~~~~~~~v   94 (346)
T d1jmxb_          28 DTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVP-------------GEVGRSMYSF   94 (346)
T ss_dssp             TEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCST-------------TEEEECSSCE
T ss_pred             CCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccc-------------cccCCceEEE
Confidence            455677778855689999999999987755 56789999999886543211110000             0112246789


Q ss_pred             EEeCCCCeEEEEeCC------------CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCccccccc
Q 019290          102 KFNPVTCDLYIADAY------------FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQ  169 (343)
Q Consensus       102 ~~~~~~~~l~v~~~~------------~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~  169 (343)
                      ++++++..+|++...            ..+..++..+++..........  ......+...+ +++++++..        
T Consensus        95 ~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~--------  163 (346)
T d1jmxb_          95 AISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM--PRQVYLMRAAD-DGSLYVAGP--------  163 (346)
T ss_dssp             EECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC--CSSCCCEEECT-TSCEEEESS--------
T ss_pred             EEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeec--cCceEEEEecC-CCEEEEeCC--------
Confidence            999966678887532            1244444443321111000000  01223344444 577777432        


Q ss_pred             ceeeeeecCCCceEEEEeCCCCceEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEE
Q 019290          170 YFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFW  229 (343)
Q Consensus       170 ~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~  229 (343)
                                  .+..++..+++..........+...++++++..+|+.....+.+..++
T Consensus       164 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (346)
T d1jmxb_         164 ------------DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLY  211 (346)
T ss_dssp             ------------SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEE
T ss_pred             ------------cceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeee
Confidence                        355566655554433333344555556666666666555555544433

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.87  E-value=8.6e-07  Score=75.77  Aligned_cols=116  Identities=11%  Similarity=0.030  Sum_probs=74.9

Q ss_pred             ccccccccCC-CCCCCceEEEcCCCCeeEE-EecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeee
Q 019290           23 SKSYQQLQLP-GVVGPESLAFDCNGEGPYV-GVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLG  100 (343)
Q Consensus        23 ~~~~~~~~~~-~~~~p~~l~~d~~g~~l~~-~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g  100 (343)
                      .+.++++.++ ....|.++++++||+.+|+ +..++.|..||..+++...-......              ......+.+
T Consensus        21 ~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~--------------~~~~~~~~~   86 (337)
T d1pbyb_          21 MAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTP--------------EERVKSLFG   86 (337)
T ss_dssp             TEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBT--------------TEEEECTTC
T ss_pred             CeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCC--------------cccccceee
Confidence            4556777777 4457999999999997775 46788999999988765432211100              011223568


Q ss_pred             EEEeCCCCeEEEEeC------------CCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCe-EEE
Q 019290          101 IKFNPVTCDLYIADA------------YFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGI-VYF  158 (343)
Q Consensus       101 i~~~~~~~~l~v~~~------------~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~-l~v  158 (343)
                      ++++++++.+|++..            ...+..+|..+++........     ..++++++++ ||+ +|+
T Consensus        87 v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-----~~~~~~~~s~-dg~~l~~  151 (337)
T d1pbyb_          87 AALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP-----RQITMLAWAR-DGSKLYG  151 (337)
T ss_dssp             EEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC-----SSCCCEEECT-TSSCEEE
T ss_pred             EEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecccc-----CCceEEEEcC-CCCEEEE
Confidence            899986667877742            123667787777655433221     3477899999 465 444

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.87  E-value=5.7e-07  Score=76.14  Aligned_cols=186  Identities=17%  Similarity=0.178  Sum_probs=113.1

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      ...+|++.++|+.++++..++.|..||.++++......                  ......+..+++.+ ++.++++..
T Consensus        14 ~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~------------------~~h~~~v~~v~~~~-~g~~~~~~~   74 (299)
T d1nr0a2          14 AITALSSSADGKTLFSADAEGHINSWDISTGISNRVFP------------------DVHATMITGIKTTS-KGDLFTVSW   74 (299)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSS------------------CSCSSCEEEEEECT-TSCEEEEET
T ss_pred             CcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEc------------------CCCCCcEEEEEeec-cceeecccc
Confidence            46789999999988888899999999988765433210                  01123457889998 778888766


Q ss_pred             CCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEE
Q 019290          116 YFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTV  195 (343)
Q Consensus       116 ~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~  195 (343)
                      ...+..++............ .......+..+++.+ +|++.++..                  .+.+..++..  +...
T Consensus        75 d~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~-~g~~~~~~~------------------~~~i~~~~~~--~~~~  132 (299)
T d1nr0a2          75 DDHLKVVPAGGSGVDSSKAV-ANKLSSQPLGLAVSA-DGDIAVAAC------------------YKHIAIYSHG--KLTE  132 (299)
T ss_dssp             TTEEEEECSSSSSSCTTSCC-EEECSSCEEEEEECT-TSSCEEEEE------------------SSEEEEEETT--EEEE
T ss_pred             eeeEEEeccCCccccccccc-ccccccccccccccc-ccccccccc------------------cccccccccc--cccc
Confidence            66788888754332211110 001113456788888 577666443                  2356666643  3222


Q ss_pred             eecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEecc
Q 019290          196 MYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNS  266 (343)
Q Consensus       196 ~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~~  266 (343)
                      .. .......++++++++.+++. ..++.|..|++.+... ....... .......++++++|++.++...
T Consensus       133 ~~-~~~~~~~~~~s~~~~~l~~g-~~dg~i~~~d~~~~~~-~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~  199 (299)
T d1nr0a2         133 VP-ISYNSSCVALSNDKQFVAVG-GQDSKVHVYKLSGASV-SEVKTIV-HPAEITSVAFSNNGAFLVATDQ  199 (299)
T ss_dssp             EE-CSSCEEEEEECTTSCEEEEE-ETTSEEEEEEEETTEE-EEEEEEE-CSSCEEEEEECTTSSEEEEEET
T ss_pred             cc-cccccccccccccccccccc-cccccccccccccccc-ccccccc-cccccccccccccccccccccc
Confidence            22 12345678899998866554 4678999999875322 1111111 1222455778888877666544

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.79  E-value=4.3e-06  Score=73.29  Aligned_cols=160  Identities=11%  Similarity=0.059  Sum_probs=98.3

Q ss_pred             CceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCC
Q 019290           37 PESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAY  116 (343)
Q Consensus        37 p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~  116 (343)
                      ..+++++++|+.+.++..++.|..||.+++++..+....                 .....+..++++++++.|..+...
T Consensus        10 It~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~-----------------gH~~~V~~l~fsp~~~~l~s~s~D   72 (371)
T d1k8kc_          10 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELK-----------------EHNGQVTGVDWAPDSNRIVTCGTD   72 (371)
T ss_dssp             CCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEE-----------------CCSSCEEEEEEETTTTEEEEEETT
T ss_pred             eEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEec-----------------CCCCCEEEEEECCCCCEEEEEECC
Confidence            479999999997778888899999998776654432110                 112346789999844445555433


Q ss_pred             CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEE-
Q 019290          117 FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTV-  195 (343)
Q Consensus       117 ~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~-  195 (343)
                      ..|..+|++++..+.......  ....+..+.++| +++..++...               ...-.++.++........ 
T Consensus        73 ~~i~vWd~~~~~~~~~~~~~~--~~~~v~~i~~~p-~~~~l~~~s~---------------d~~i~i~~~~~~~~~~~~~  134 (371)
T d1k8kc_          73 RNAYVWTLKGRTWKPTLVILR--INRAARCVRWAP-NEKKFAVGSG---------------SRVISICYFEQENDWWVCK  134 (371)
T ss_dssp             SCEEEEEEETTEEEEEEECCC--CSSCEEEEEECT-TSSEEEEEET---------------TSSEEEEEEETTTTEEEEE
T ss_pred             CeEEEEeeccccccccccccc--cccccccccccc-ccccceeecc---------------cCcceeeeeeccccccccc
Confidence            348888888776554432211  123578889999 4765554322               112346666654332221 


Q ss_pred             -eecC-CCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290          196 -MYNG-LSFPNGVALSNNNSFLLLAESATLKILRFWLQG  232 (343)
Q Consensus       196 -~~~~-~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~  232 (343)
                       .... ......++++|++..+ ++...++.|..|+...
T Consensus       135 ~~~~~~~~~v~~v~~~p~~~~l-~s~s~D~~v~v~~~~~  172 (371)
T d1k8kc_         135 HIKKPIRSTVLSLDWHPNSVLL-AAGSCDFKCRIFSAYI  172 (371)
T ss_dssp             EECTTCCSCEEEEEECTTSSEE-EEEETTSCEEEEECCC
T ss_pred             ccccccccccccccccccccce-eccccCcEEEEEeecc
Confidence             1111 2345678899998865 4555678999998754

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.76  E-value=2.7e-06  Score=76.33  Aligned_cols=192  Identities=8%  Similarity=-0.075  Sum_probs=114.2

Q ss_pred             CCCceEEEcCCCC-eeE-EEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEE
Q 019290           35 VGPESLAFDCNGE-GPY-VGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYI  112 (343)
Q Consensus        35 ~~p~~l~~d~~g~-~l~-~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v  112 (343)
                      ..|..++++.+.. .++ +...+|.|..+|..+++...-.                    .....|++++++++++.+|+
T Consensus        19 ~~p~~~~~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l--------------------~~g~~~~~vafSPDGk~l~~   78 (426)
T d1hzua2          19 DRPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVI--------------------DTGYAVHISRMSASGRYLLV   78 (426)
T ss_dssp             GSCSSCCSCCCGGGEEEEEETTTTEEEEEETTTCSEEEEE--------------------ECCSSEEEEEECTTSCEEEE
T ss_pred             cCCCcccccCCCCeEEEEEEcCCCEEEEEECCCCcEEEEE--------------------eCCCCeeEEEECCCCCEEEE
Confidence            3566667776633 343 4567899999999887654221                    11135889999996667888


Q ss_pred             EeCCCeEEEEeCCCCeEEEcccccCC-CCccCcceeEEeCCCCe-EEEEeCCcccccccceeeeeecCCCceEEEEeCCC
Q 019290          113 ADAYFGLMVVGPNGGQAQQLASSAGG-IPFRFTNDLDIDPNTGI-VYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLK  190 (343)
Q Consensus       113 ~~~~~gi~~~d~~~~~~~~~~~~~~~-~~~~~~~~i~~d~~dg~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~  190 (343)
                      +.....+..+|.++++.......... .+...+.++++.+ ||+ ++++...                 .+.+..+|..+
T Consensus        79 ~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~sp-DG~~l~v~~~~-----------------~~~v~i~d~~~  140 (426)
T d1hzua2          79 IGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGY-EDRYTIAGAYW-----------------PPQFAIMDGET  140 (426)
T ss_dssp             EETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTC-TTTEEEEEEEE-----------------SSEEEEEETTT
T ss_pred             EeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecC-CCCEEEEeecC-----------------CCeEEEEcCCc
Confidence            86555699999988875433222111 1112233344445 455 5665432                 34577778776


Q ss_pred             CceEEeecC------------CCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCC
Q 019290          191 KNVTVMYNG------------LSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKG  258 (343)
Q Consensus       191 ~~~~~~~~~------------~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G  258 (343)
                      +........            ......++.++++..++++....+.+..++...... ..... ......|.++.++++|
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~g  218 (426)
T d1hzua2         141 LEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDN-LTVTS-IGAAPFLADGGWDSSH  218 (426)
T ss_dssp             CCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSS-CEEEE-EECCSSEEEEEECTTS
T ss_pred             cceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccc-eeeEE-eccCCccEeeeECCCC
Confidence            665432211            112345667778888888877778887776543221 11111 1223347788999999


Q ss_pred             CEEEEecc
Q 019290          259 EFWIAMNS  266 (343)
Q Consensus       259 ~lwi~~~~  266 (343)
                      +.++....
T Consensus       219 ~~~~~a~~  226 (426)
T d1hzua2         219 RYFMTAAN  226 (426)
T ss_dssp             CEEEEEET
T ss_pred             cEEEeeee
Confidence            87666554

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.72  E-value=6e-07  Score=81.14  Aligned_cols=172  Identities=11%  Similarity=0.005  Sum_probs=112.8

Q ss_pred             ccccccccCCCCCCCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEE
Q 019290           23 SKSYQQLQLPGVVGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIK  102 (343)
Q Consensus        23 ~~~~~~~~~~~~~~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~  102 (343)
                      .+.++.++.+.  .|++++++|||+.+|++..++.+..||..+++.......                  .....+.++.
T Consensus        52 ~~v~~~~~~g~--~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i------------------~~~~~~~~~~  111 (432)
T d1qksa2          52 YEIKTVLDTGY--AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEI------------------KIGSEARSIE  111 (432)
T ss_dssp             CCEEEEEECSS--CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEE------------------ECCSEEEEEE
T ss_pred             CcEEEEEeCCC--CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEE------------------ecCCCCCCeE
Confidence            45566666553  699999999999999888899999999877553322100                  1122355665


Q ss_pred             Ee----CCCCeEEEEeCC-CeEEEEeCCCCeEEEccccc-------CCCCccCcceeEEeCCCCeE-EEEeCCccccccc
Q 019290          103 FN----PVTCDLYIADAY-FGLMVVGPNGGQAQQLASSA-------GGIPFRFTNDLDIDPNTGIV-YFTDSSIYFQRRQ  169 (343)
Q Consensus       103 ~~----~~~~~l~v~~~~-~gi~~~d~~~~~~~~~~~~~-------~~~~~~~~~~i~~d~~dg~l-~v~~~~~~~~~~~  169 (343)
                      ++    +++..||++... ..+..+|.++++........       .-.+......++.++ +|.. +++...       
T Consensus       112 ~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~-dg~~~~vs~~~-------  183 (432)
T d1qksa2         112 TSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASH-YRPEFIVNVKE-------  183 (432)
T ss_dssp             ECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECS-SSSEEEEEETT-------
T ss_pred             EecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECC-CCCEEEEEEcc-------
Confidence            54    434567877543 45999999988765543211       001123345567777 4654 444433       


Q ss_pred             ceeeeeecCCCceEEEEeCCCCceEEe--ecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290          170 YFMSIATGDRSGRLLKYDPLKKNVTVM--YNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQG  232 (343)
Q Consensus       170 ~~~~~~~~~~~~~v~~~d~~~~~~~~~--~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~  232 (343)
                                .+.+..+|..+.+...+  ......+.+++++|||+++|++....+.+..++...
T Consensus       184 ----------~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~  238 (432)
T d1qksa2         184 ----------TGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKE  238 (432)
T ss_dssp             ----------TTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTT
T ss_pred             ----------CCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeeccc
Confidence                      56788888765543221  234467899999999999999998888999988765

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=98.69  E-value=7.2e-06  Score=74.18  Aligned_cols=180  Identities=16%  Similarity=0.155  Sum_probs=104.8

Q ss_pred             cccCCCCCCCceEEEcCCCCeeEEEec-CCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeC-
Q 019290           28 QLQLPGVVGPESLAFDCNGEGPYVGVS-DGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNP-  105 (343)
Q Consensus        28 ~~~~~~~~~p~~l~~d~~g~~l~~~~~-~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~-  105 (343)
                      +.-..++..|.+|++.++|+ +|+... .|+|+++++.++..+.+...+....           .....+.-.+|++++ 
T Consensus        20 ~~ia~~L~~P~~la~~pdg~-llVter~~G~i~~v~~~~g~~~~i~~~~~~~~-----------~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          20 KVILSNLNKPHALLWGPDNQ-IWLTERATGKILRVNPESGSVKTVFQVPEIVN-----------DADGQNGLLGFAFHPD   87 (450)
T ss_dssp             EEEECCCSSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEECTTCCC-----------CTTSSCSEEEEEECTT
T ss_pred             EEEECCCCCceEEEEeCCCe-EEEEEecCCEEEEEECCCCcEeecccCCcccc-----------ccCCCCceeeEEeCCC
Confidence            33344678999999999999 565554 7999999988887776654322110           011223456899987 


Q ss_pred             --CCCeEEEEeC---------C--Ce--EEEEeC--CCCeE---EEcccccCCCCccCcceeEEeCCCCeEEEEeCCccc
Q 019290          106 --VTCDLYIADA---------Y--FG--LMVVGP--NGGQA---QQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYF  165 (343)
Q Consensus       106 --~~~~l~v~~~---------~--~g--i~~~d~--~~~~~---~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~  165 (343)
                        .++.+|++-+         .  +.  +.++..  .....   +.+.........+....|++++ ||.||++......
T Consensus        88 f~~n~~iYvsyt~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgp-DG~LYvs~Gd~~~  166 (450)
T d1crua_          88 FKNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGP-DQKIYYTIGDQGR  166 (450)
T ss_dssp             TTTSCEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECT-TSCEEEEECCTTT
T ss_pred             CccCCEEEEEEecCCCCCcccccccceEEEeeecccccccccceEEEeecccccccccccceeEcC-CCCEEEEecCCCc
Confidence              2467888621         0  11  333333  22221   1111111222234567899999 6999998654211


Q ss_pred             ccc-------ccee--------eeeecCCCceEEEEeCCCCce-----------EEeecCCCCcceeEEecCCCEEEEEE
Q 019290          166 QRR-------QYFM--------SIATGDRSGRLLKYDPLKKNV-----------TVMYNGLSFPNGVALSNNNSFLLLAE  219 (343)
Q Consensus       166 ~~~-------~~~~--------~~~~~~~~~~v~~~d~~~~~~-----------~~~~~~~~~~~~i~~~~d~~~lyv~~  219 (343)
                      .-.       ....        ........++|.|+++++...           +.+..+++.|.+++++++++ ||+++
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~Gkilri~~dg~~~~dnP~~~~~~~ei~a~G~RNp~g~~~~p~g~-l~~~e  245 (450)
T d1crua_         167 NQLAYLFLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRNPQGLAFTPNGK-LLQSE  245 (450)
T ss_dssp             TSGGGTTSCCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCSEEEEEEECTTSC-EEEEE
T ss_pred             ccccccccccccccCcccccccccccccccCceEEeeccccccccccccccccceEEEeccccccceeecccce-eeecc
Confidence            100       0000        000012247899998864321           34667888899999998765 88887


Q ss_pred             cC
Q 019290          220 SA  221 (343)
Q Consensus       220 ~~  221 (343)
                      ..
T Consensus       246 ~G  247 (450)
T d1crua_         246 QG  247 (450)
T ss_dssp             EC
T ss_pred             cc
Confidence            54

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.65  E-value=1.4e-06  Score=75.23  Aligned_cols=148  Identities=15%  Similarity=0.116  Sum_probs=99.6

Q ss_pred             EEEcC-CCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCCCe
Q 019290           40 LAFDC-NGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFG  118 (343)
Q Consensus        40 l~~d~-~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~~g  118 (343)
                      --+.| ||+ +++....|.|+.+|.+++....+.                     ....+..++++++++.|+++....|
T Consensus         8 ~~fSP~dG~-~~a~~~~g~v~v~d~~~~~~~~~~---------------------~~~~v~~~~~spDg~~l~~~~~~~g   65 (360)
T d1k32a3           8 EDFSPLDGD-LIAFVSRGQAFIQDVSGTYVLKVP---------------------EPLRIRYVRRGGDTKVAFIHGTREG   65 (360)
T ss_dssp             EEEEECGGG-CEEEEETTEEEEECTTSSBEEECS---------------------CCSCEEEEEECSSSEEEEEEEETTE
T ss_pred             ccccCCCCC-EEEEEECCeEEEEECCCCcEEEcc---------------------CCCCEEEEEECCCCCEEEEEEcCCC
Confidence            34788 888 555557789999999887665542                     2235678999994446666544444


Q ss_pred             --EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEe
Q 019290          119 --LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVM  196 (343)
Q Consensus       119 --i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~  196 (343)
                        |+.+|.++++.+.+...     ...+..+++.+ ||+..++...                 .+.++.++.++++....
T Consensus        66 ~~v~v~d~~~~~~~~~~~~-----~~~v~~~~~sp-dg~~l~~~~~-----------------~~~~~~~~~~~~~~~~~  122 (360)
T d1k32a3          66 DFLGIYDYRTGKAEKFEEN-----LGNVFAMGVDR-NGKFAVVAND-----------------RFEIMTVDLETGKPTVI  122 (360)
T ss_dssp             EEEEEEETTTCCEEECCCC-----CCSEEEEEECT-TSSEEEEEET-----------------TSEEEEEETTTCCEEEE
T ss_pred             CEEEEEECCCCcEEEeeCC-----CceEEeeeecc-cccccceecc-----------------ccccccccccccceeee
Confidence              88999999888765321     13467899999 5776554432                 45688888887776544


Q ss_pred             ec-CCCCcceeEEecCCCEEEEEEcC---------CCeEEEEEccC
Q 019290          197 YN-GLSFPNGVALSNNNSFLLLAESA---------TLKILRFWLQG  232 (343)
Q Consensus       197 ~~-~~~~~~~i~~~~d~~~lyv~~~~---------~~~i~~~~~~~  232 (343)
                      .. .......+++++||+.+.++...         .+.++.++..+
T Consensus       123 ~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~  168 (360)
T d1k32a3         123 ERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEG  168 (360)
T ss_dssp             EECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTT
T ss_pred             eecccccccchhhccceeeeeeeccccccceeeccccceeeecccc
Confidence            33 33456789999999987765322         23466777654

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.65  E-value=3.4e-06  Score=71.09  Aligned_cols=186  Identities=12%  Similarity=0.118  Sum_probs=106.9

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      ...++++.++|+ +++...++.+..++..........                .........+..+++.+ ++.+.++..
T Consensus        57 ~v~~v~~~~~g~-~~~~~~d~~v~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~s~-~g~~~~~~~  118 (299)
T d1nr0a2          57 MITGIKTTSKGD-LFTVSWDDHLKVVPAGGSGVDSSK----------------AVANKLSSQPLGLAVSA-DGDIAVAAC  118 (299)
T ss_dssp             CEEEEEECTTSC-EEEEETTTEEEEECSSSSSSCTTS----------------CCEEECSSCEEEEEECT-TSSCEEEEE
T ss_pred             cEEEEEeeccce-eecccceeeEEEeccCCccccccc----------------ccccccccccccccccc-ccccccccc
Confidence            356899999998 676677888988886543211000                00001123467888888 666555545


Q ss_pred             CCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEE
Q 019290          116 YFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTV  195 (343)
Q Consensus       116 ~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~  195 (343)
                      ...+..++..  +.......      .....+++.+ ++.+.++...                 .+.|..+|..+++...
T Consensus       119 ~~~i~~~~~~--~~~~~~~~------~~~~~~~~s~-~~~~l~~g~~-----------------dg~i~~~d~~~~~~~~  172 (299)
T d1nr0a2         119 YKHIAIYSHG--KLTEVPIS------YNSSCVALSN-DKQFVAVGGQ-----------------DSKVHVYKLSGASVSE  172 (299)
T ss_dssp             SSEEEEEETT--EEEEEECS------SCEEEEEECT-TSCEEEEEET-----------------TSEEEEEEEETTEEEE
T ss_pred             cccccccccc--cccccccc------cccccccccc-cccccccccc-----------------cccccccccccccccc
Confidence            5678888754  23322111      2345678888 4665553222                 4567778776565433


Q ss_pred             e--ecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEecc
Q 019290          196 M--YNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNS  266 (343)
Q Consensus       196 ~--~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~~  266 (343)
                      .  .........++++++++.++.+ ..++.|..|++...........+.........++++++|++.++...
T Consensus       173 ~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~  244 (299)
T d1nr0a2         173 VKTIVHPAEITSVAFSNNGAFLVAT-DQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSL  244 (299)
T ss_dssp             EEEEECSSCEEEEEECTTSSEEEEE-ETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEET
T ss_pred             ccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccceEEEcC
Confidence            2  2233456789999999876655 45788999997643210111111101111334678899987666544

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.61  E-value=4.8e-05  Score=64.42  Aligned_cols=254  Identities=10%  Similarity=0.027  Sum_probs=130.6

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      ...+|++.+++..+.++..+|.|..||..+++......                   .....+..+++++++..+..+..
T Consensus        57 ~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~-------------------~~~~~v~~v~~~~~~~~l~~~~~  117 (340)
T d1tbga_          57 KIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIP-------------------LRSSWVMTCAYAPSGNYVACGGL  117 (340)
T ss_dssp             CEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEE-------------------CSCSCEEEEEECTTSSEEEEEET
T ss_pred             CEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEe-------------------cccccEEeeEeeccceeeeeecc
Confidence            36789999999988888899999999998765432211                   12234678899984445555543


Q ss_pred             CCeEEEEeCCCCeEEEcc-cccCCCCccCcceeEEeC--------CCCeEEEEeCCccccc---------------ccce
Q 019290          116 YFGLMVVGPNGGQAQQLA-SSAGGIPFRFTNDLDIDP--------NTGIVYFTDSSIYFQR---------------RQYF  171 (343)
Q Consensus       116 ~~gi~~~d~~~~~~~~~~-~~~~~~~~~~~~~i~~d~--------~dg~l~v~~~~~~~~~---------------~~~~  171 (343)
                      ...+..++.......... ....+.. ..........        .+..............               ....
T Consensus       118 d~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (340)
T d1tbga_         118 DNICSIYNLKTREGNVRVSRELAGHT-GYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT  196 (340)
T ss_dssp             TCCEEEEESSSSCSCCCEEEEECCCS-SCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTS
T ss_pred             cceeecccccccccccccceeccccc-ccccccccccccccccccccccccccccccccccccccccceeEeeecccccc
Confidence            333666665432111000 0000000 0000111111        0111111111000000               0000


Q ss_pred             eeeeecCCCceEEEEeCCCCceEEe-ecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecC--CCC
Q 019290          172 MSIATGDRSGRLLKYDPLKKNVTVM-YNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEM--PRF  248 (343)
Q Consensus       172 ~~~~~~~~~~~v~~~d~~~~~~~~~-~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~~~  248 (343)
                      ..+..+...+.|..+|..+++.... .........++++|+++.++.+ ..++.|..|++.....   ...+...  ...
T Consensus       197 ~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~-s~d~~i~~~~~~~~~~---~~~~~~~~~~~~  272 (340)
T d1tbga_         197 RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATG-SDDATCRLFDLRADQE---LMTYSHDNIICG  272 (340)
T ss_dssp             SEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE-ETTSCEEEEETTTTEE---EEEECCTTCCSC
T ss_pred             ceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEE-eCCCeEEEEeeccccc---ccccccccccCc
Confidence            1111223345688888876665432 2233456789999999866554 5678999999765221   1122111  111


Q ss_pred             CCceeeCCCCCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECC-CCCEEEEeeCCCCCccCCceeEEEe-CC
Q 019290          249 PDNIKSDSKGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDV-NGNVVDVLDGNEGNTLNSVSEVQEY-GE  326 (343)
Q Consensus       249 p~~i~~d~~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~~-~g  326 (343)
                      ...++++++|++.++...                        .+.|..+|. +++.+..+....    ..+..+... ++
T Consensus       273 i~~~~~s~~~~~l~~g~~------------------------dg~i~iwd~~~~~~~~~~~~H~----~~V~~l~~s~d~  324 (340)
T d1tbga_         273 ITSVSFSKSGRLLLAGYD------------------------DFNCNVWDALKADRAGVLAGHD----NRVSCLGVTDDG  324 (340)
T ss_dssp             EEEEEECSSSCEEEEEET------------------------TSCEEEEETTTCCEEEEECCCS----SCEEEEEECTTS
T ss_pred             eEEEEECCCCCEEEEEEC------------------------CCEEEEEECCCCcEEEEEcCCC----CCEEEEEEeCCC
Confidence            234678899987777655                        346777885 577777665322    245555444 45


Q ss_pred             EEEEecCCCCeEEEE
Q 019290          327 YLYTGSSVQPYVVVI  341 (343)
Q Consensus       327 ~l~i~~~~~~~i~~~  341 (343)
                      .+.++......|.+.
T Consensus       325 ~~l~s~s~Dg~v~iW  339 (340)
T d1tbga_         325 MAVATGSWDSFLKIW  339 (340)
T ss_dssp             SCEEEEETTSCEEEE
T ss_pred             CEEEEEccCCEEEEe
Confidence            544444444455544

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=98.56  E-value=6.2e-06  Score=70.46  Aligned_cols=142  Identities=13%  Similarity=0.064  Sum_probs=85.3

Q ss_pred             EEEeCCCCeEEEEeCCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCe-EEEEeCCcccccccceeeeeecCC
Q 019290          101 IKFNPVTCDLYIADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGI-VYFTDSSIYFQRRQYFMSIATGDR  179 (343)
Q Consensus       101 i~~~~~~~~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~-l~v~~~~~~~~~~~~~~~~~~~~~  179 (343)
                      +++.+.+..+++++..+.|..+|++++++........+   ..+.+++++| ||+ +|++...                 
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~---~~p~~l~~sp-DG~~l~v~~~~-----------------   60 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDK---FGPGTAMMAP-DNRTAYVLNNH-----------------   60 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSC---CSSCEEEECT-TSSEEEEEETT-----------------
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCC---CCcceEEECC-CCCEEEEEECC-----------------
Confidence            45566233455555556799999999987543332222   3578999999 565 6776644                 


Q ss_pred             CceEEEEeCCCCceEEeec-C------CCCcceeEEecCCCEEEEEEc-----------CCCeEEEEEccCcccccccee
Q 019290          180 SGRLLKYDPLKKNVTVMYN-G------LSFPNGVALSNNNSFLLLAES-----------ATLKILRFWLQGERTTYTPQL  241 (343)
Q Consensus       180 ~~~v~~~d~~~~~~~~~~~-~------~~~~~~i~~~~d~~~lyv~~~-----------~~~~i~~~~~~~~~~~~~~~~  241 (343)
                      .+.|..+|..+++...... .      ...+.++++++||+.+|++..           ....+..++............
T Consensus        61 ~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  140 (346)
T d1jmxb_          61 YGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRT  140 (346)
T ss_dssp             TTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEE
T ss_pred             CCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEe
Confidence            5679999998876543221 1      124788999999999999854           245566666543211011111


Q ss_pred             eecCCCCCCceeeCCCCCEEEEe
Q 019290          242 FAEMPRFPDNIKSDSKGEFWIAM  264 (343)
Q Consensus       242 ~~~~~~~p~~i~~d~~G~lwi~~  264 (343)
                      . ..+.....+....++++++..
T Consensus       141 ~-~~~~~~~~~~~~~~~~~~~~~  162 (346)
T d1jmxb_         141 F-PMPRQVYLMRAADDGSLYVAG  162 (346)
T ss_dssp             E-ECCSSCCCEEECTTSCEEEES
T ss_pred             e-eccCceEEEEecCCCEEEEeC
Confidence            1 112223334556677787764

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.55  E-value=1.1e-05  Score=70.42  Aligned_cols=231  Identities=10%  Similarity=-0.088  Sum_probs=129.4

Q ss_pred             eEEEcCCCCeeEEEec----------CCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCC
Q 019290           39 SLAFDCNGEGPYVGVS----------DGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTC  108 (343)
Q Consensus        39 ~l~~d~~g~~l~~~~~----------~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~  108 (343)
                      .+++.+||+.+|+...          ++.|..||..+++.......+.            .........|.++++++++.
T Consensus        69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~------------~~~~~~g~~p~~~a~SpDGk  136 (368)
T d1mdah_          69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPD------------APRFSVGPRVHIIGNCASSA  136 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETT------------SCSCCBSCCTTSEEECTTSS
T ss_pred             cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCc------------cceecccCCccceEECCCCC
Confidence            6899999998886542          4569999998876543221110            00112234578899999677


Q ss_pred             eEEEEeCCC-eEEEEeCCCCeEEEcccccCCC---CccCcceeEEeCCCCeEEEEeCCcccc-----------cccce-e
Q 019290          109 DLYIADAYF-GLMVVGPNGGQAQQLASSAGGI---PFRFTNDLDIDPNTGIVYFTDSSIYFQ-----------RRQYF-M  172 (343)
Q Consensus       109 ~l~v~~~~~-gi~~~d~~~~~~~~~~~~~~~~---~~~~~~~i~~d~~dg~l~v~~~~~~~~-----------~~~~~-~  172 (343)
                      .||+++... .+..+|.+++++..........   +......++..+ ||.+++.+......           ..+.. .
T Consensus       137 ~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (368)
T d1mdah_         137 CLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSC-PASLAASDLAAAPAAAGIVGAQCTGAQNCSSQ  215 (368)
T ss_dssp             CEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCC-TTSCEEEECCSSCCCCEECCCCSCTTSCBCSC
T ss_pred             EEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEccCCCceEEEEcC-CCCEEEEEecCCceeeeeeeccccccccccee
Confidence            899997554 4999999988865543222111   011122344455 46655443221000           00000 0


Q ss_pred             -------eeeecCCCceEEEEeCCCCceEEeecC-------------CCCcceeEEecCCCEEEEEEcCC--------Ce
Q 019290          173 -------SIATGDRSGRLLKYDPLKKNVTVMYNG-------------LSFPNGVALSNNNSFLLLAESAT--------LK  224 (343)
Q Consensus       173 -------~~~~~~~~~~v~~~d~~~~~~~~~~~~-------------~~~~~~i~~~~d~~~lyv~~~~~--------~~  224 (343)
                             ........+.++.++...+........             ......+++++++..+|++....        ..
T Consensus       216 ~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~  295 (368)
T d1mdah_         216 AAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAEN  295 (368)
T ss_dssp             CEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEE
T ss_pred             ecccccCcEEEEecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCce
Confidence                   000011234566666654444332110             11245688999999999875332        35


Q ss_pred             EEEEEccCccccccceeeecCCCCCCceeeCCCCC--EEEEeccCCCccccccccccccccCCCcccCCCeEEEECC-CC
Q 019290          225 ILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGE--FWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDV-NG  301 (343)
Q Consensus       225 i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~--lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g  301 (343)
                      |+++|..+...+.   .+ .....+.++++++||+  +|++...                        .+.|..+|. .|
T Consensus       296 v~v~D~~t~~~~~---~~-~~~~~~~~~a~spDG~~~ly~s~~~------------------------~~~v~v~D~~tg  347 (368)
T d1mdah_         296 TSSVTASVGQTSG---PI-SNGHDSDAIIAAQDGASDNYANSAG------------------------TEVLDIYDAASD  347 (368)
T ss_dssp             EEEEESSSCCEEE---CC-EEEEEECEEEECCSSSCEEEEEETT------------------------TTEEEEEESSSC
T ss_pred             EEEEECCCCcEeE---Ee-cCCCceeEEEECCCCCEEEEEEeCC------------------------CCeEEEEECCCC
Confidence            8888876532211   11 1223577899999996  5666554                        347888997 68


Q ss_pred             CEEEEeeCC
Q 019290          302 NVVDVLDGN  310 (343)
Q Consensus       302 ~~~~~~~~~  310 (343)
                      +.+..+..+
T Consensus       348 k~~~~i~~g  356 (368)
T d1mdah_         348 QDQSSVELD  356 (368)
T ss_dssp             EEEEECCCC
T ss_pred             CEEEEEECC
Confidence            888777643

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.54  E-value=2.9e-05  Score=66.72  Aligned_cols=240  Identities=10%  Similarity=-0.047  Sum_probs=133.3

Q ss_pred             ccccccCCCCCCCceEEEcCCCCeeEEEe----------cCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCC
Q 019290           25 SYQQLQLPGVVGPESLAFDCNGEGPYVGV----------SDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPL   94 (343)
Q Consensus        25 ~~~~~~~~~~~~p~~l~~d~~g~~l~~~~----------~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (343)
                      .+.++....  .| .+++++||+.+|+..          .++.|..||..+++...-.......            ....
T Consensus        40 ~~~~~~~g~--~~-~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~------------~~~~  104 (355)
T d2bbkh_          40 VIGMIDGGF--LP-NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAP------------RFLV  104 (355)
T ss_dssp             EEEEEEECS--SC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCC------------CCCB
T ss_pred             EEEEEECCC--CC-ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcc------------eeec
Confidence            344444332  34 799999999888643          2567999999887654322111000            0122


Q ss_pred             cCCeeeEEEeCCCCeEEEEeCCC--eEEEEeCCCCeEEEcccccCC---CCccCcceeEEeCCCCe-EEEEeCCcccc--
Q 019290           95 CGRPLGIKFNPVTCDLYIADAYF--GLMVVGPNGGQAQQLASSAGG---IPFRFTNDLDIDPNTGI-VYFTDSSIYFQ--  166 (343)
Q Consensus        95 ~~~p~gi~~~~~~~~l~v~~~~~--gi~~~d~~~~~~~~~~~~~~~---~~~~~~~~i~~d~~dg~-l~v~~~~~~~~--  166 (343)
                      ...|.+++++++++.+++++...  .+..++..+++..........   .+......+++.+ |+. +++........  
T Consensus       105 ~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-dg~~~~v~~~~~~~~~~  183 (355)
T d2bbkh_         105 GTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCR-DGSLAKVAFGTEGTPEI  183 (355)
T ss_dssp             SCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEET-TSCEEEEECCSSSCCEE
T ss_pred             CCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcC-CCCEEEEEecCCCeEEE
Confidence            34578899999677888886432  377788888765443221110   0112233456666 344 44433221000  


Q ss_pred             -------c-----------ccceeeeeecCCCceEEEEeCCCCceEEeecC-------------CCCcceeEEecCCCEE
Q 019290          167 -------R-----------RQYFMSIATGDRSGRLLKYDPLKKNVTVMYNG-------------LSFPNGVALSNNNSFL  215 (343)
Q Consensus       167 -------~-----------~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-------------~~~~~~i~~~~d~~~l  215 (343)
                             .           ......+......+.++.++..++....+...             ......+++++++..+
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~  263 (355)
T d2bbkh_         184 THTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRI  263 (355)
T ss_dssp             EECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEE
T ss_pred             EecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeE
Confidence                   0           00011122223355677787776655432210             0123458889999999


Q ss_pred             EEEEcCC---------CeEEEEEccCccccccceeeecCCCCCCceeeCCCCC--EEEEeccCCCccccccccccccccC
Q 019290          216 LLAESAT---------LKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGE--FWIAMNSARGKIESNKKTAFCEETA  284 (343)
Q Consensus       216 yv~~~~~---------~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~--lwi~~~~~~~~~~~~~~~~~~~~~~  284 (343)
                      |++....         ..|+.++..+...   ...+ .....|.++++++||+  ++++...                  
T Consensus       264 ~~~~~~~~~~~~~~~~~~v~v~d~~t~~~---~~~~-~~~~~~~~~a~spDG~~~l~v~~~~------------------  321 (355)
T d2bbkh_         264 YLLVDQRDEWRHKTASRFVVVLDAKTGER---LAKF-EMGHEIDSINVSQDEKPLLYALSTG------------------  321 (355)
T ss_dssp             EEEEEECCTTCTTSCEEEEEEEETTTCCE---EEEE-EEEEEECEEEECCSSSCEEEEEETT------------------
T ss_pred             EEEeccCCceeecCCCCeEEEEeCCCCcE---EEEe-cCCCCEEEEEEcCCCCeEEEEEECC------------------
Confidence            9875432         4688888765322   1111 1233478899999996  4555433                  


Q ss_pred             CCcccCCCeEEEECC-CCCEEEEee
Q 019290          285 KPWFLRDPVGVKFDV-NGNVVDVLD  308 (343)
Q Consensus       285 ~~~~~~~~~v~~~d~-~g~~~~~~~  308 (343)
                            .+.|..+|. +|+.+..+.
T Consensus       322 ------d~~i~v~D~~tg~~~~~i~  340 (355)
T d2bbkh_         322 ------DKTLYIHDAESGEELRSVN  340 (355)
T ss_dssp             ------TTEEEEEETTTCCEEEEEC
T ss_pred             ------CCEEEEEECCCCCEEEEEe
Confidence                  347888997 688887775

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.54  E-value=0.00014  Score=63.00  Aligned_cols=236  Identities=14%  Similarity=0.106  Sum_probs=133.4

Q ss_pred             CceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCC
Q 019290           37 PESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAY  116 (343)
Q Consensus        37 p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~  116 (343)
                      ..++++.++|+.+.++..++.|..++..+++......                   .....+..+.+.+....+..+...
T Consensus       124 V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~-------------------~h~~~v~~~~~~~~~~~~~~~~~~  184 (388)
T d1erja_         124 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQ-------------------GHEQDIYSLDYFPSGDKLVSGSGD  184 (388)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-------------------CCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEEEEECCCCCcceecccccccccccccccccccccc-------------------cccccccccccccccccccccccc
Confidence            4579999999988888999999999987765433211                   112235677888745566666544


Q ss_pred             CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEE-
Q 019290          117 FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTV-  195 (343)
Q Consensus       117 ~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~-  195 (343)
                      ..+..+|.++..........     .....+++.+.++.+.++...                 .+.|..++..++.... 
T Consensus       185 ~~i~~~d~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~-----------------d~~i~i~~~~~~~~~~~  242 (388)
T d1erja_         185 RTVRIWDLRTGQCSLTLSIE-----DGVTTVAVSPGDGKYIAAGSL-----------------DRAVRVWDSETGFLVER  242 (388)
T ss_dssp             SEEEEEETTTTEEEEEEECS-----SCEEEEEECSTTCCEEEEEET-----------------TSCEEEEETTTCCEEEE
T ss_pred             eeeeeeeccccccccccccc-----cccccccccCCCCCeEEEEcC-----------------CCeEEEeecccCcccee
Confidence            55888998876544332211     123344555434665554322                 3557777776554332 


Q ss_pred             eec-------CCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccce------eeec---CCCCCCceeeCCCCC
Q 019290          196 MYN-------GLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQ------LFAE---MPRFPDNIKSDSKGE  259 (343)
Q Consensus       196 ~~~-------~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~------~~~~---~~~~p~~i~~d~~G~  259 (343)
                      +..       .......+++++++..++.+ ..++.|..|++..........      ....   .......++++++|+
T Consensus       243 ~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  321 (388)
T d1erja_         243 LDSENESGTGHKDSVYSVVFTRDGQSVVSG-SLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDE  321 (388)
T ss_dssp             EC------CCCSSCEEEEEECTTSSEEEEE-ETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGC
T ss_pred             eccccccccCCCCCEEEEEECCCCCEEEEE-ECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCC
Confidence            111       12235678999998866544 567899999976422100000      0000   111233466788887


Q ss_pred             EEEEeccCCCccccccccccccccCCCcccCCCeEEEECC-CCCEEEEeeCCCCCccCCceeEEE------e-CCEEEEe
Q 019290          260 FWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDV-NGNVVDVLDGNEGNTLNSVSEVQE------Y-GEYLYTG  331 (343)
Q Consensus       260 lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~------~-~g~l~i~  331 (343)
                      +.++...                        .+.|..+|. +++.+..+....+    .+..+..      . +++++++
T Consensus       322 ~l~sg~~------------------------dg~i~vwd~~~~~~~~~l~~H~~----~V~~~~~~~~~~~spd~~~l~s  373 (388)
T d1erja_         322 YILSGSK------------------------DRGVLFWDKKSGNPLLMLQGHRN----SVISVAVANGSSLGPEYNVFAT  373 (388)
T ss_dssp             EEEEEET------------------------TSEEEEEETTTCCEEEEEECCSS----CEEEEEECSSCTTCTTCEEEEE
T ss_pred             EEEEEeC------------------------CCEEEEEECCCCcEEEEEeCCCC----CEEEEEEecCcccCCCCCEEEE
Confidence            7666544                        346777885 5777776654332    2333221      1 4666666


Q ss_pred             cCCCCeEEEEc
Q 019290          332 SSVQPYVVVIK  342 (343)
Q Consensus       332 ~~~~~~i~~~~  342 (343)
                      +.....|.+.+
T Consensus       374 ~s~Dg~I~iW~  384 (388)
T d1erja_         374 GSGDCKARIWK  384 (388)
T ss_dssp             EETTSEEEEEE
T ss_pred             EeCCCEEEEEe
Confidence            55555665543

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.52  E-value=7.9e-05  Score=66.36  Aligned_cols=173  Identities=10%  Similarity=-0.002  Sum_probs=105.5

Q ss_pred             ccccccccCCCCCCCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEE
Q 019290           23 SKSYQQLQLPGVVGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIK  102 (343)
Q Consensus        23 ~~~~~~~~~~~~~~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~  102 (343)
                      .+.++.++.+.  .|++++++|||+.+|++..++.+..||..+++.......                  .....+.++.
T Consensus        52 ~~~~~~l~~g~--~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i------------------~~~~~~~~~~  111 (426)
T d1hzua2          52 KKIVKVIDTGY--AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEI------------------KIGIEARSVE  111 (426)
T ss_dssp             CSEEEEEECCS--SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEE------------------ECCSEEEEEE
T ss_pred             CcEEEEEeCCC--CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEE------------------eCCCCCcceE
Confidence            44456666553  699999999999999888889999999988764332110                  1112344554


Q ss_pred             Ee----CCCCeEEEEeCC-CeEEEEeCCCCeEEEcccccCC-------CCccCcceeEEeCCCCeEEEEeCCcccccccc
Q 019290          103 FN----PVTCDLYIADAY-FGLMVVGPNGGQAQQLASSAGG-------IPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQY  170 (343)
Q Consensus       103 ~~----~~~~~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~-------~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~  170 (343)
                      ++    ++++.++++... ..+..+|.++++..........       ........++..+....+|++...        
T Consensus       112 ~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~--------  183 (426)
T d1hzua2         112 SSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE--------  183 (426)
T ss_dssp             ECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT--------
T ss_pred             EeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCC--------
Confidence            44    445567887543 4488889988765544221100       011122334444422234443332        


Q ss_pred             eeeeeecCCCceEEEEeCCCCce--EEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290          171 FMSIATGDRSGRLLKYDPLKKNV--TVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQG  232 (343)
Q Consensus       171 ~~~~~~~~~~~~v~~~d~~~~~~--~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~  232 (343)
                               .+.+..++......  .........+.++++++++++++++......+..++...
T Consensus       184 ---------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~  238 (426)
T d1hzua2         184 ---------TGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKD  238 (426)
T ss_dssp             ---------TTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTT
T ss_pred             ---------CCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeeccc
Confidence                     44565555433321  122344567889999999999999998888999988765

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.52  E-value=8.1e-06  Score=69.42  Aligned_cols=159  Identities=9%  Similarity=-0.017  Sum_probs=101.2

Q ss_pred             eeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCCCe-EEEEeCCC
Q 019290           48 GPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFG-LMVVGPNG  126 (343)
Q Consensus        48 ~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~~g-i~~~d~~~  126 (343)
                      .++++..+++|..||..+.+...-...                 ......|.+++++++++.+|++....+ |..+|.++
T Consensus         3 ~~vt~~~d~~v~v~D~~s~~~~~~i~~-----------------~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t   65 (337)
T d1pbyb_           3 YILAPARPDKLVVIDTEKMAVDKVITI-----------------ADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVT   65 (337)
T ss_dssp             EEEEEETTTEEEEEETTTTEEEEEEEC-----------------TTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred             EEEEEcCCCEEEEEECCCCeEEEEEEC-----------------CCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCC
Confidence            456778889999999988764432110                 122345789999995556888765544 99999999


Q ss_pred             CeEEEcccccC-CCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEeecCCCCcce
Q 019290          127 GQAQQLASSAG-GIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSFPNG  205 (343)
Q Consensus       127 ~~~~~~~~~~~-~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~  205 (343)
                      ++......... ......+.++++.+....+|++......  ..+.    .......+..+|..+++..........+.+
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~--~~~~----~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  139 (337)
T d1pbyb_          66 GETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRL--ELTH----FEVQPTRVALYDAETLSRRKAFEAPRQITM  139 (337)
T ss_dssp             CCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEE--CSSC----EEECCCEEEEEETTTTEEEEEEECCSSCCC
T ss_pred             CcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcc--eeee----ccccccceeeccccCCeEEEeccccCCceE
Confidence            88654433222 1123567889999943456665432100  0000    011245677888887776655555567889


Q ss_pred             eEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290          206 VALSNNNSFLLLAESATLKILRFWLQG  232 (343)
Q Consensus       206 i~~~~d~~~lyv~~~~~~~i~~~~~~~  232 (343)
                      +++++|++.+|+++   +.+..++...
T Consensus       140 ~~~s~dg~~l~~~~---~~~~~~d~~~  163 (337)
T d1pbyb_         140 LAWARDGSKLYGLG---RDLHVMDPEA  163 (337)
T ss_dssp             EEECTTSSCEEEES---SSEEEEETTT
T ss_pred             EEEcCCCCEEEEEc---CCcceeeeec
Confidence            99999999998874   3466677654

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.50  E-value=0.00015  Score=62.75  Aligned_cols=205  Identities=10%  Similarity=-0.027  Sum_probs=107.3

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      ...+++++++|+++.++. ++.|..||..+++...-............ .............+..+++++++..|..+. 
T Consensus        64 ~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~-  140 (388)
T d1erja_          64 VVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPE-NLNTSSSPSSDLYIRSVCFSPDGKFLATGA-  140 (388)
T ss_dssp             CCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEECTTSSEEEEEE-
T ss_pred             cEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeeccccccccccc-ccccccccCCCCCEEEEEECCCCCcceecc-
Confidence            467999999999666664 78899999877654322110000000000 000000011223356789998444455554 


Q ss_pred             CCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceE
Q 019290          116 YFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVT  194 (343)
Q Consensus       116 ~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~  194 (343)
                      .+| |..++..+++........    ...+..+...+. +...+....                 .+.+..+|..+....
T Consensus       141 ~dg~v~i~~~~~~~~~~~~~~h----~~~v~~~~~~~~-~~~~~~~~~-----------------~~~i~~~d~~~~~~~  198 (388)
T d1erja_         141 EDRLIRIWDIENRKIVMILQGH----EQDIYSLDYFPS-GDKLVSGSG-----------------DRTVRIWDLRTGQCS  198 (388)
T ss_dssp             TTSCEEEEETTTTEEEEEECCC----SSCEEEEEECTT-SSEEEEEET-----------------TSEEEEEETTTTEEE
T ss_pred             cccccccccccccccccccccc----cccccccccccc-ccccccccc-----------------ceeeeeeeccccccc
Confidence            455 888898877655433221    134667777774 554443222                 456778887765554


Q ss_pred             EeecCCCCcceeEEec-CCCEEEEEEcCCCeEEEEEccCccccccceeeec-CCCC---CCceeeCCCCCEEEEecc
Q 019290          195 VMYNGLSFPNGVALSN-NNSFLLLAESATLKILRFWLQGERTTYTPQLFAE-MPRF---PDNIKSDSKGEFWIAMNS  266 (343)
Q Consensus       195 ~~~~~~~~~~~i~~~~-d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~---p~~i~~d~~G~lwi~~~~  266 (343)
                      ...........+++.+ ++. +.++...++.|..++............... ..+.   ...+.++++|++.++...
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~  274 (388)
T d1erja_         199 LTLSIEDGVTTVAVSPGDGK-YIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL  274 (388)
T ss_dssp             EEEECSSCEEEEEECSTTCC-EEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET
T ss_pred             cccccccccccccccCCCCC-eEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEEC
Confidence            4333333444555554 455 445555678899998764322111110000 1111   234667888877666544

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.46  E-value=0.00027  Score=60.20  Aligned_cols=244  Identities=11%  Similarity=0.055  Sum_probs=129.5

Q ss_pred             CceEEEcC--CCCeeEEEecCCEEEEEEcCCCC-eEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEE
Q 019290           37 PESLAFDC--NGEGPYVGVSDGRILKWKAANSG-WTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIA  113 (343)
Q Consensus        37 p~~l~~d~--~g~~l~~~~~~g~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~  113 (343)
                      ..++++.|  +|.++.++..+|.|..||..... .........            .......+....+++++++..+.++
T Consensus        66 v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~------------~~~~~~~~~v~~v~~s~~~~~l~~~  133 (325)
T d1pgua1          66 VTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVK------------SEFQVLAGPISDISWDFEGRRLCVV  133 (325)
T ss_dssp             EEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEE------------EEEECCSSCEEEEEECTTSSEEEEE
T ss_pred             EEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccc------------cccccccCcEEEEEECCCCCcccee
Confidence            55788876  56766678889999888764321 101000000            0001122345678898844455554


Q ss_pred             eCC-C-eEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCe-EEEEeCCcccccccceeeeeecCCCceEEEEeCCC
Q 019290          114 DAY-F-GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGI-VYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLK  190 (343)
Q Consensus       114 ~~~-~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~  190 (343)
                      ... . .+..++.++++........    ...++.+++.+. +. +.++...                 .+.+..+|...
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~h----~~~v~~~~~~~~-~~~~~~~~~~-----------------d~~v~~~d~~~  191 (325)
T d1pgua1         134 GEGRDNFGVFISWDSGNSLGEVSGH----SQRINACHLKQS-RPMRSMTVGD-----------------DGSVVFYQGPP  191 (325)
T ss_dssp             ECCSSCSEEEEETTTCCEEEECCSC----SSCEEEEEECSS-SSCEEEEEET-----------------TTEEEEEETTT
T ss_pred             eccccceEEEEeecccccceeeeec----cccccccccccc-ccceEEEeec-----------------ccccccccccc
Confidence            332 2 2677777766543222111    135678889884 54 3443322                 45677777665


Q ss_pred             CceEEeecC----CCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeC---CCCCEEEE
Q 019290          191 KNVTVMYNG----LSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSD---SKGEFWIA  263 (343)
Q Consensus       191 ~~~~~~~~~----~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d---~~G~lwi~  263 (343)
                      .+...-...    ......++++|++..++++...++.|..|+......   ...+........++...   ++|+++++
T Consensus       192 ~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~---~~~l~~~~~~v~~~~~s~~~~dg~~l~s  268 (325)
T d1pgua1         192 FKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEF---LKYIEDDQEPVQGGIFALSWLDSQKFAT  268 (325)
T ss_dssp             BEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCE---EEECCBTTBCCCSCEEEEEESSSSEEEE
T ss_pred             cccceecccccCCCCccEEeeeccccceeccccccccceeeeeeccccc---cccccccccccccceeeeeccCCCEEEE
Confidence            544322211    223577899998666677767789999999764221   12221111112333332   67877666


Q ss_pred             eccCCCccccccccccccccCCCcccCCCeEEEECC-CCCEEEEeeCCCCCccCCceeEEEe-CCEEEEecCCCCeEEEE
Q 019290          264 MNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDV-NGNVVDVLDGNEGNTLNSVSEVQEY-GEYLYTGSSVQPYVVVI  341 (343)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~~~~i~~~  341 (343)
                      ...                        .+.|..+|. .++.+..+.............+... ++.| ++......|.++
T Consensus       269 ~s~------------------------D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~s~s~dg~i~vw  323 (325)
T d1pgua1         269 VGA------------------------DATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRI-ISLSLDGTLNFY  323 (325)
T ss_dssp             EET------------------------TSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEE-EEEETTSCEEEE
T ss_pred             EeC------------------------CCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEE-EEEECCCEEEEE
Confidence            554                        346667786 4666666543222111222223333 4555 454545777776


Q ss_pred             c
Q 019290          342 K  342 (343)
Q Consensus       342 ~  342 (343)
                      +
T Consensus       324 d  324 (325)
T d1pgua1         324 E  324 (325)
T ss_dssp             E
T ss_pred             E
Confidence            5

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.44  E-value=2.8e-05  Score=67.89  Aligned_cols=189  Identities=10%  Similarity=0.005  Sum_probs=106.4

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      ...+|+++|+++.+.++..++.|..||..++........                 ......+..+.+++++..++++. 
T Consensus        53 ~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~-----------------~~~~~~v~~i~~~p~~~~l~~~s-  114 (371)
T d1k8kc_          53 QVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVI-----------------LRINRAARCVRWAPNEKKFAVGS-  114 (371)
T ss_dssp             CEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEEC-----------------CCCSSCEEEEEECTTSSEEEEEE-
T ss_pred             CEEEEEECCCCCEEEEEECCCeEEEEeeccccccccccc-----------------ccccccccccccccccccceeec-
Confidence            368999999999777888889999999877654433211                 11223467899998555566664 


Q ss_pred             CCe-EEEEeC--CCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCc
Q 019290          116 YFG-LMVVGP--NGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKN  192 (343)
Q Consensus       116 ~~g-i~~~d~--~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~  192 (343)
                      .++ +..++.  ........ ..... ....+..++++| ++.+.++...                 .+.|..++...+.
T Consensus       115 ~d~~i~i~~~~~~~~~~~~~-~~~~~-~~~~v~~v~~~p-~~~~l~s~s~-----------------D~~v~v~~~~~~~  174 (371)
T d1k8kc_         115 GSRVISICYFEQENDWWVCK-HIKKP-IRSTVLSLDWHP-NSVLLAAGSC-----------------DFKCRIFSAYIKE  174 (371)
T ss_dssp             TTSSEEEEEEETTTTEEEEE-EECTT-CCSCEEEEEECT-TSSEEEEEET-----------------TSCEEEEECCCTT
T ss_pred             ccCcceeeeeeccccccccc-ccccc-cccccccccccc-cccceecccc-----------------CcEEEEEeeccCc
Confidence            444 554444  33222211 11111 113467888999 5776664432                 2334444443221


Q ss_pred             e-------------------EEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCcee
Q 019290          193 V-------------------TVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIK  253 (343)
Q Consensus       193 ~-------------------~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~  253 (343)
                      .                   ...........+++++++++.++.. ..++.|..|++.....   ...+.....-...++
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~-~~d~~i~iwd~~~~~~---~~~~~~~~~~v~s~~  250 (371)
T d1k8kc_         175 VEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWV-SHDSTVCLADADKKMA---VATLASETLPLLAVT  250 (371)
T ss_dssp             TSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEE-ETTTEEEEEEGGGTTE---EEEEECSSCCEEEEE
T ss_pred             cccccccccccccccceeeeeeccCccCcEEEEEeeccccccccc-ccCCcceEEeeecccc---eeeeecccccceeee
Confidence            1                   0111122335788999999876655 4578999999865221   112211111123466


Q ss_pred             eCCCCCEEEEecc
Q 019290          254 SDSKGEFWIAMNS  266 (343)
Q Consensus       254 ~d~~G~lwi~~~~  266 (343)
                      +.++|++.++...
T Consensus       251 fs~d~~~la~g~d  263 (371)
T d1k8kc_         251 FITESSLVAAGHD  263 (371)
T ss_dssp             EEETTEEEEEETT
T ss_pred             ecCCCCEEEEEcC
Confidence            7788877766544

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.37  E-value=0.00056  Score=58.86  Aligned_cols=168  Identities=11%  Similarity=-0.032  Sum_probs=89.0

Q ss_pred             ccccccccCCCCCCCceEEEcCCCCeeEEEec----------CCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccC
Q 019290           23 SKSYQQLQLPGVVGPESLAFDCNGEGPYVGVS----------DGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLE   92 (343)
Q Consensus        23 ~~~~~~~~~~~~~~p~~l~~d~~g~~l~~~~~----------~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (343)
                      .+.+.+++.+.   +..+++++||+.+|+...          ++.|..||..+++...-.......            ..
T Consensus        57 g~~~~~~~~~~---~~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~------------~~  121 (373)
T d2madh_          57 GSILGHVNGGF---LPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAP------------RF  121 (373)
T ss_pred             CCEEEEEeCCC---CccEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcc------------ee
Confidence            34444544332   347999999998886542          356888998886654322111000            00


Q ss_pred             CCcCCeeeEEEeCCCCeEEEEeCC--CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccc
Q 019290           93 PLCGRPLGIKFNPVTCDLYIADAY--FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQY  170 (343)
Q Consensus        93 ~~~~~p~gi~~~~~~~~l~v~~~~--~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~  170 (343)
                      .....|.++.+.+++..+++....  ..+..++..+.+.....        ..+..+++.+.+..+|++...        
T Consensus       122 ~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~s~~g~~~~v~~~~--------  185 (373)
T d2madh_         122 DVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLL--------SSPTCYHIHPGAPSTFYLLCA--------  185 (373)
T ss_pred             EeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEe--------ccceeEEEecCCCcEEEEEcC--------
Confidence            112245678888755666666432  23556666655443221        234567777742356665544        


Q ss_pred             eeeeeecCCCceEEEEeCCCCceEEeecC-----CCCc--ceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290          171 FMSIATGDRSGRLLKYDPLKKNVTVMYNG-----LSFP--NGVALSNNNSFLLLAESATLKILRFWLQG  232 (343)
Q Consensus       171 ~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-----~~~~--~~i~~~~d~~~lyv~~~~~~~i~~~~~~~  232 (343)
                               .+.+..++..++........     ...+  .....++++  .++....++.++.++..+
T Consensus       186 ---------dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~  243 (373)
T d2madh_         186 ---------QGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSG--RIVWPVYSGKILQADISA  243 (373)
T ss_pred             ---------CCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCc--eEEEecCCceEEEEEcCC
Confidence                     56677787765554332211     1112  223333333  344444567777777654

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.28  E-value=3.6e-05  Score=67.06  Aligned_cols=205  Identities=7%  Similarity=-0.086  Sum_probs=110.1

Q ss_pred             CCCceEEEcCCCCeeEEEe-cCCEEEEEEcCCCCeEEeeecCCCccc---------c-ccCCCCC--------c------
Q 019290           35 VGPESLAFDCNGEGPYVGV-SDGRILKWKAANSGWTEFATTAPHRAR---------E-ICDGSTN--------T------   89 (343)
Q Consensus        35 ~~p~~l~~d~~g~~l~~~~-~~g~i~~~d~~~~~~~~~~~~~~~~~~---------~-~~~~~~~--------~------   89 (343)
                      ..|.++++++||+.+|++. ..+.+..+|..+++.......+.....         . ..+|...        .      
T Consensus       124 ~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~  203 (368)
T d1mdah_         124 PRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVG  203 (368)
T ss_dssp             CCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECC
T ss_pred             CCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEccCCCceEEEEcCCCCEEEEEecCCceeeeeee
Confidence            3588999999999888664 567899999887664433211110000         0 0000000        0      


Q ss_pred             --ccCCCcCCeeeEEEeCCCCeEEEEeCCCeEEEEeCCCCeEEEcccccC--------CCCccCcceeEEeCCCCeEEEE
Q 019290           90 --TLEPLCGRPLGIKFNPVTCDLYIADAYFGLMVVGPNGGQAQQLASSAG--------GIPFRFTNDLDIDPNTGIVYFT  159 (343)
Q Consensus        90 --~~~~~~~~p~gi~~~~~~~~l~v~~~~~gi~~~d~~~~~~~~~~~~~~--------~~~~~~~~~i~~d~~dg~l~v~  159 (343)
                        ........+....... ++.++.. ....++.++...+....+.....        .........+++.+..+.+|++
T Consensus       204 ~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~  281 (368)
T d1mdah_         204 AQCTGAQNCSSQAAQANY-PGMLVWA-VASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMIL  281 (368)
T ss_dssp             CCSCTTSCBCSCCEEETT-TTEEEEC-BSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEE
T ss_pred             cccccccccceeeccccc-CcEEEEe-cCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEE
Confidence              0000111123344444 4444443 23446677766555444321110        0011224567788754677775


Q ss_pred             eCCcccccccceeeeeecCCCceEEEEeCCCCceEEeecCCCCcceeEEecCCC-EEEEEEcCCCeEEEEEccCcccccc
Q 019290          160 DSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNS-FLLLAESATLKILRFWLQGERTTYT  238 (343)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~i~~~~d~~-~lyv~~~~~~~i~~~~~~~~~~~~~  238 (343)
                      ......         ........|+.+|..+++..........+.++++++||+ .+|++....+.|++||..+...   
T Consensus       282 ~~~~~~---------~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~---  349 (368)
T d1mdah_         282 TVEHSR---------SCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQD---  349 (368)
T ss_dssp             EEECSS---------CTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEE---
T ss_pred             ecCCCc---------eeecCCceEEEEECCCCcEeEEecCCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCE---
Confidence            432100         001123468899998887544333335578899999997 5789988889999999765222   


Q ss_pred             ceeeecCCCCCCceee
Q 019290          239 PQLFAEMPRFPDNIKS  254 (343)
Q Consensus       239 ~~~~~~~~~~p~~i~~  254 (343)
                      ... .+....|.+|.+
T Consensus       350 ~~~-i~~g~~P~~l~~  364 (368)
T d1mdah_         350 QSS-VELDKGPESLSV  364 (368)
T ss_dssp             EEE-CCCCSCCCEEEC
T ss_pred             EEE-EECCCCCCEEEE
Confidence            111 223345888765

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.26  E-value=8e-05  Score=66.44  Aligned_cols=210  Identities=11%  Similarity=0.055  Sum_probs=122.3

Q ss_pred             CCCCCceEEEc--CCCCeeEEE-ecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCe
Q 019290           33 GVVGPESLAFD--CNGEGPYVG-VSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCD  109 (343)
Q Consensus        33 ~~~~p~~l~~d--~~g~~l~~~-~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~  109 (343)
                      ....|+-...+  +||+.+|+. ..+++|-++|..+.+...+..                  .+....|+|+++.++.++
T Consensus        68 d~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~------------------iP~g~gphgi~~spdg~t  129 (441)
T d1qnia2          68 DCHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITH------------------IPNVQAIHGLRLQKVPKT  129 (441)
T ss_dssp             CBCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEE------------------CTTCCCEEEEEECCSSBC
T ss_pred             cccCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEe------------------cCCCCCccceEEeccCCE
Confidence            33457666654  789988865 578899999999876655432                  123456899999985667


Q ss_pred             EEEEeCC-Ce------------------EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccc--c-
Q 019290          110 LYIADAY-FG------------------LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQ--R-  167 (343)
Q Consensus       110 l~v~~~~-~g------------------i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~--~-  167 (343)
                      +||+... ..                  +..+|.++.++.......     ..+..+++++.++.+|++.......  + 
T Consensus       130 ~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~-----~~p~~v~~spdGk~a~vt~~nse~~~~id  204 (441)
T d1qnia2         130 NYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVD-----GNLDNTDADYTGKYATSTCYNSERAVDLA  204 (441)
T ss_dssp             CEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEES-----SCCCCEEECSSSSEEEEEESCTTCCSSHH
T ss_pred             EEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEecC-----CCccceEECCCCCEEEEEecCCCceEEEe
Confidence            7877421 11                  244677765544322111     2478899999534577765432100  0 


Q ss_pred             ------c------ccee--------eeeecCCCceEEEEeC-CCCceEEeecCCCCcceeEEecCCCEEEEEEcCCCeEE
Q 019290          168 ------R------QYFM--------SIATGDRSGRLLKYDP-LKKNVTVMYNGLSFPNGVALSNNNSFLLLAESATLKIL  226 (343)
Q Consensus       168 ------~------~~~~--------~~~~~~~~~~v~~~d~-~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~  226 (343)
                            .      .+..        ....- ...++..++. ...++.........|.|++++|||+++|+++...+.+.
T Consensus       205 ~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v-~~~~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvs  283 (441)
T d1qnia2         205 GTMRNDRDWVVVFNVERIAAAVKAGNFKTI-GDSKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVS  283 (441)
T ss_dssp             HHTCSSBCEEEEEEHHHHHHHHHTTCCBCC-TTCCCCEEECSSSCSSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEE
T ss_pred             ccCcceEEEEEeCCccceEEEecCCCEEEe-CCCCcEEEEcccCCceEEEEeCCCCccCceECCCCCEEEEeCCcCCcEE
Confidence                  0      0000        00000 1123444443 33334444555677999999999999999999999999


Q ss_pred             EEEccCc-----cccc-cceeeecCC-C-CCCceeeCCCCCEEEEecc
Q 019290          227 RFWLQGE-----RTTY-TPQLFAEMP-R-FPDNIKSDSKGEFWIAMNS  266 (343)
Q Consensus       227 ~~~~~~~-----~~~~-~~~~~~~~~-~-~p~~i~~d~~G~lwi~~~~  266 (343)
                      +++++.-     ..+. +..+..+.+ + .|-.-.+|++|+.|.+..-
T Consensus       284 v~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~  331 (441)
T d1qnia2         284 VIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFI  331 (441)
T ss_dssp             EEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETT
T ss_pred             EEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEEEcccc
Confidence            9997531     0001 111111111 1 1333468999999988643

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.25  E-value=0.00022  Score=60.84  Aligned_cols=248  Identities=11%  Similarity=0.040  Sum_probs=121.4

Q ss_pred             CCceEEEcCCCCeeEEEecCCE-EEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCC-CCeEEEE
Q 019290           36 GPESLAFDCNGEGPYVGVSDGR-ILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPV-TCDLYIA  113 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~-i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~-~~~l~v~  113 (343)
                      .|.++.++++|+.+.++..+.. +..++........+....                .........+++.|. ++.++++
T Consensus        19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~----------------gh~~~~v~~v~fsP~~~g~~las   82 (325)
T d1pgua1          19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFT----------------GHGSSVVTTVKFSPIKGSQYLCS   82 (325)
T ss_dssp             CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEEC----------------TTTTSCEEEEEECSSTTCCEEEE
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEe----------------CCCCCCEEEEEEeeCCCCCEEEE
Confidence            5779999999996555443333 333443322211111000                011223567888863 3344433


Q ss_pred             eCCCe-EEEEeCCCCe----EEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeC
Q 019290          114 DAYFG-LMVVGPNGGQ----AQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDP  188 (343)
Q Consensus       114 ~~~~g-i~~~d~~~~~----~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~  188 (343)
                      ...+| |..+|...++    ...............+.++++.+ ++...++...               .....+..++.
T Consensus        83 gs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~---------------~~~~~~~~~~~  146 (325)
T d1pgua1          83 GDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF-EGRRLCVVGE---------------GRDNFGVFISW  146 (325)
T ss_dssp             EETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECT-TSSEEEEEEC---------------CSSCSEEEEET
T ss_pred             EeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECC-CCCccceeec---------------cccceEEEEee
Confidence            23444 7677654321    11100000000113467888888 4765543321               01233555566


Q ss_pred             CCCceE-EeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCC---CCCCceeeCCC-CCEEEE
Q 019290          189 LKKNVT-VMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMP---RFPDNIKSDSK-GEFWIA  263 (343)
Q Consensus       189 ~~~~~~-~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~---~~p~~i~~d~~-G~lwi~  263 (343)
                      ++++.. .+.........+++++++..+.++...++.+..|+......   ...+....   .....+++.++ +.+.++
T Consensus       147 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~---~~~~~~~~~~~~~v~~v~~~pd~~~~l~s  223 (325)
T d1pgua1         147 DSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKF---SASDRTHHKQGSFVRDVEFSPDSGEFVIT  223 (325)
T ss_dssp             TTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEE---EEEECSSSCTTCCEEEEEECSTTCCEEEE
T ss_pred             cccccceeeeecccccccccccccccceEEEeeccccccccccccccc---ceecccccCCCCccEEeeeccccceeccc
Confidence            555543 33333345678899998877667666788999998654211   11111111   12334667876 566665


Q ss_pred             eccCCCccccccccccccccCCCcccCCCeEEEECC-CCCEEEEeeCCCCCccCCceeEEEeCCEEEEecCCCCeEEEEc
Q 019290          264 MNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDV-NGNVVDVLDGNEGNTLNSVSEVQEYGEYLYTGSSVQPYVVVIK  342 (343)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~~~~i~~~~  342 (343)
                      ...                        .+.|..+|. .++.+..+..........+..+...+++++++......|.+++
T Consensus       224 ~~~------------------------d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd  279 (325)
T d1pgua1         224 VGS------------------------DRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWD  279 (325)
T ss_dssp             EET------------------------TCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEE
T ss_pred             ccc------------------------ccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEE
Confidence            544                        346667775 5666666643332212222222223444444444444555554

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.24  E-value=0.00081  Score=55.43  Aligned_cols=234  Identities=12%  Similarity=0.068  Sum_probs=124.0

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      ...++++++++..+......+.+..++..........                   .........+.+.+.++.+..+..
T Consensus        61 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~  121 (317)
T d1vyhc1          61 SVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTM-------------------HGHDHNVSSVSIMPNGDHIVSASR  121 (317)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECC-------------------CCCSSCEEEEEECSSSSEEEEEET
T ss_pred             cEEEEeeeccccccccccccccccccccccccccccc-------------------ccccccceeeeccCCCceEEeecc
Confidence            4578899999997777777777777776554433221                   112223456778874555665543


Q ss_pred             CCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEE
Q 019290          116 YFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTV  195 (343)
Q Consensus       116 ~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~  195 (343)
                      ...+..+|.++++........    ...+..+++++ ++.++++...                 .+.|..++..+++...
T Consensus       122 d~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~~~~l~~~~~-----------------d~~v~~~~~~~~~~~~  179 (317)
T d1vyhc1         122 DKTIKMWEVQTGYCVKTFTGH----REWVRMVRPNQ-DGTLIASCSN-----------------DQTVRVWVVATKECKA  179 (317)
T ss_dssp             TSEEEEEETTTCCEEEEEECC----SSCEEEEEECT-TSSEEEEEET-----------------TSCEEEEETTTCCEEE
T ss_pred             CcceeEeecccceeeeEEccC----CCcceeeeccc-CCCEEEEEeC-----------------CCeEEEEeeccceeeE
Confidence            344788898877654332211    13456778888 4776664332                 2345555544333221


Q ss_pred             eec-CCCCccee--------------------EEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceee
Q 019290          196 MYN-GLSFPNGV--------------------ALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKS  254 (343)
Q Consensus       196 ~~~-~~~~~~~i--------------------~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~  254 (343)
                      ... .......+                    .....+. +.++...++.|..|++.....   ...+.........++.
T Consensus       180 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~i~~~~~~~~~~---~~~~~~~~~~v~~~~~  255 (317)
T d1vyhc1         180 ELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGP-FLLSGSRDKTIKMWDVSTGMC---LMTLVGHDNWVRGVLF  255 (317)
T ss_dssp             EECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CC-EEEEEETTSEEEEEETTTTEE---EEEEECCSSCEEEEEE
T ss_pred             EEecCCCCceEEEEeeccccceeeccccceeeeeccCCc-eeEeccCCCEEEEEECCCCcE---EEEEeCCCCCEEEEEE
Confidence            111 11111111                    2222344 344555678899998764211   1122111222345778


Q ss_pred             CCCCCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECC-CCCEEEEeeCCCCCccCCceeEEEe-CCEEEEec
Q 019290          255 DSKGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDV-NGNVVDVLDGNEGNTLNSVSEVQEY-GEYLYTGS  332 (343)
Q Consensus       255 d~~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~  332 (343)
                      .++|++.++...                        .+.|..+|. +++.+..+....    ..+..+... ++++.++.
T Consensus       256 ~~~~~~l~s~~~------------------------dg~i~iwd~~~~~~~~~~~~h~----~~V~~~~~s~~~~~l~s~  307 (317)
T d1vyhc1         256 HSGGKFILSCAD------------------------DKTLRVWDYKNKRCMKTLNAHE----HFVTSLDFHKTAPYVVTG  307 (317)
T ss_dssp             CSSSSCEEEEET------------------------TTEEEEECCTTSCCCEEEECCS----SCEEEEEECSSSSCEEEE
T ss_pred             CCCCCEEEEEEC------------------------CCeEEEEECCCCcEEEEEcCCC----CCEEEEEEcCCCCEEEEE
Confidence            889987766544                        346777886 566666665322    235555443 45544544


Q ss_pred             CCCCeEEEEc
Q 019290          333 SVQPYVVVIK  342 (343)
Q Consensus       333 ~~~~~i~~~~  342 (343)
                      .....|.+++
T Consensus       308 s~Dg~i~iWd  317 (317)
T d1vyhc1         308 SVDQTVKVWE  317 (317)
T ss_dssp             ETTSEEEEEC
T ss_pred             eCCCeEEEeC
Confidence            4445566543

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.22  E-value=0.00063  Score=58.51  Aligned_cols=204  Identities=14%  Similarity=0.002  Sum_probs=105.3

Q ss_pred             CCceEEEcCCCCeeEEEe--cCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEE
Q 019290           36 GPESLAFDCNGEGPYVGV--SDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIA  113 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~--~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~  113 (343)
                      .|..+++.++|+.+++..  .++.+..++..+.+....                       ...+.++.+.+++..+|++
T Consensus       126 ~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~s~~g~~~~v~  182 (373)
T d2madh_         126 YSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQL-----------------------LSSPTCYHIHPGAPSTFYL  182 (373)
T ss_pred             CCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEE-----------------------eccceeEEEecCCCcEEEE
Confidence            467888888888665433  234455555544332211                       1235677788755677777


Q ss_pred             eCCCe-EEEEeCCCCeEEEcccccCC--CCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCC
Q 019290          114 DAYFG-LMVVGPNGGQAQQLASSAGG--IPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLK  190 (343)
Q Consensus       114 ~~~~g-i~~~d~~~~~~~~~~~~~~~--~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~  190 (343)
                      ...++ +..++..+++..........  ........+..++ ++.+.+...                  .+.++.++..+
T Consensus       183 ~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~------------------~~~v~~~~~~~  243 (373)
T d2madh_         183 LCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANK-SGRIVWPVY------------------SGKILQADISA  243 (373)
T ss_pred             EcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECC-CceEEEecC------------------CceEEEEEcCC
Confidence            65555 88888877665443221111  1112223344454 233322111                  22333343332


Q ss_pred             CceEE-------------eecCCCCcceeEEecCCCEEEEEE---------cCCCeEEEEEccCccccccceeeecCCCC
Q 019290          191 KNVTV-------------MYNGLSFPNGVALSNNNSFLLLAE---------SATLKILRFWLQGERTTYTPQLFAEMPRF  248 (343)
Q Consensus       191 ~~~~~-------------~~~~~~~~~~i~~~~d~~~lyv~~---------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  248 (343)
                      +....             ..........+++++++..+|+..         ...+.+..++......   ... ......
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~---~~~-~~~~~~  319 (373)
T d2madh_         244 AGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQT---SSQ-ISLGHD  319 (373)
T ss_pred             CeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcE---EEE-ecCCCC
Confidence            22211             111112234556667776666543         3345667777654221   111 123344


Q ss_pred             CCceeeCCCCC--EEEEeccCCCccccccccccccccCCCcccCCCeEEEECC-CCCEEEEeeC
Q 019290          249 PDNIKSDSKGE--FWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDV-NGNVVDVLDG  309 (343)
Q Consensus       249 p~~i~~d~~G~--lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~~  309 (343)
                      +.++++++||+  +|++...                        .+.|+.+|. .|+.+..+..
T Consensus       320 ~~~~a~spDG~~~l~vt~~~------------------------d~~v~v~D~~tg~~~~~~~~  359 (373)
T d2madh_         320 VDAISVAQDGGPDLYALSAG------------------------TEVLHIYDAGAGDQDQSTVE  359 (373)
T ss_pred             eeEEEECCCCCEEEEEEeCC------------------------CCeEEEEECCCCCEEEEECC
Confidence            77899999996  4555444                        347888886 6888887753

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.20  E-value=7.1e-05  Score=64.16  Aligned_cols=158  Identities=11%  Similarity=-0.084  Sum_probs=95.5

Q ss_pred             CceE-EEcCCCCeeEEEe-----cCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeE
Q 019290           37 PESL-AFDCNGEGPYVGV-----SDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDL  110 (343)
Q Consensus        37 p~~l-~~d~~g~~l~~~~-----~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l  110 (343)
                      |..+ +..+||+.+|+..     ...+++.+|..+++...-.                     ..+...+++++++++.|
T Consensus         3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~---------------------~~g~~~~~a~SpDg~~l   61 (355)
T d2bbkh_           3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMI---------------------DGGFLPNPVVADDGSFI   61 (355)
T ss_dssp             CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEE---------------------EECSSCEEEECTTSSCE
T ss_pred             CcEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEE---------------------ECCCCCceEEcCCCCEE
Confidence            3434 3468999888653     3457999999887543211                     01123378999966679


Q ss_pred             EEEeCC----------CeEEEEeCCCCeEEEcccccCC---CCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeec
Q 019290          111 YIADAY----------FGLMVVGPNGGQAQQLASSAGG---IPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATG  177 (343)
Q Consensus       111 ~v~~~~----------~gi~~~d~~~~~~~~~~~~~~~---~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~  177 (343)
                      |+++..          ..|..+|.++++..........   .....+..+++.+..+.++++...               
T Consensus        62 ~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~---------------  126 (355)
T d2bbkh_          62 AHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFS---------------  126 (355)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECS---------------
T ss_pred             EEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCC---------------
Confidence            987531          2388999998876554322111   112457788999843456775543               


Q ss_pred             CCCceEEEEeCCCCceEEeecC--------CCCcceeEEecCCCEEEEEEcCCCeEEEEEcc
Q 019290          178 DRSGRLLKYDPLKKNVTVMYNG--------LSFPNGVALSNNNSFLLLAESATLKILRFWLQ  231 (343)
Q Consensus       178 ~~~~~v~~~d~~~~~~~~~~~~--------~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~  231 (343)
                       ....+..++..+++.......        ......+++++|++.+++.....+.+...+..
T Consensus       127 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~  187 (355)
T d2bbkh_         127 -PAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTE  187 (355)
T ss_dssp             -SSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECC
T ss_pred             -CCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecc
Confidence             133466667766654322111        11234567888888888877777777666654

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.16  E-value=0.00012  Score=62.44  Aligned_cols=161  Identities=11%  Similarity=-0.001  Sum_probs=102.3

Q ss_pred             CCceEEEcCCCCeeEEEe-cCC-EEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEE
Q 019290           36 GPESLAFDCNGEGPYVGV-SDG-RILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIA  113 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~-~~g-~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~  113 (343)
                      ...++++.|||+.+++.. .++ .|+.+|..+++...+.                    .....+..+++++++..|.++
T Consensus        44 ~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~--------------------~~~~~v~~~~~spdg~~l~~~  103 (360)
T d1k32a3          44 RIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFE--------------------ENLGNVFAMGVDRNGKFAVVA  103 (360)
T ss_dssp             CEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECC--------------------CCCCSEEEEEECTTSSEEEEE
T ss_pred             CEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEee--------------------CCCceEEeeeeccccccccee
Confidence            578999999999776543 333 5788898887766542                    233456789999955566666


Q ss_pred             eCCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEE-EeCCcccccccceeeeeecCCCceEEEEeCCCCc
Q 019290          114 DAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYF-TDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKN  192 (343)
Q Consensus       114 ~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v-~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~  192 (343)
                      .....++.++.++++.........    ..+.++++.+ ||+..+ +......        ...+.....+..++..+++
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~sp-dg~~la~~~~~~~~--------~~~~~~~~~~~v~d~~~~~  170 (360)
T d1k32a3         104 NDRFEIMTVDLETGKPTVIERSRE----AMITDFTISD-NSRFIAYGFPLKHG--------ETDGYVMQAIHVYDMEGRK  170 (360)
T ss_dssp             ETTSEEEEEETTTCCEEEEEECSS----SCCCCEEECT-TSCEEEEEEEECSS--------TTCSCCEEEEEEEETTTTE
T ss_pred             ccccccccccccccceeeeeeccc----ccccchhhcc-ceeeeeeecccccc--------ceeeccccceeeeccccCc
Confidence            555569999998887655433221    3467889999 576544 2211000        0001113457778888777


Q ss_pred             eEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEc
Q 019290          193 VTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWL  230 (343)
Q Consensus       193 ~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~  230 (343)
                      ...+..........++++||+.|++... .+.+..++.
T Consensus       171 ~~~~~~~~~~~~~~~~spdg~~l~~~s~-~~~~~~~d~  207 (360)
T d1k32a3         171 IFAATTENSHDYAPAFDADSKNLYYLSY-RSLDPSPDR  207 (360)
T ss_dssp             EEECSCSSSBEEEEEECTTSCEEEEEES-CCCCCEECS
T ss_pred             eeeecccccccccccccCCCCEEEEEeC-CCceEcccc
Confidence            6665555455677889999998887653 445555543

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.15  E-value=0.0013  Score=54.09  Aligned_cols=155  Identities=10%  Similarity=0.037  Sum_probs=95.4

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      ...+|+++++++.+.++..++.|..||..+++...-.                   ......+..+.+++++..+..+..
T Consensus        19 ~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~-------------------~~h~~~V~~~~~~~~~~~~~~~~~   79 (317)
T d1vyhc1          19 PVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTL-------------------KGHTDSVQDISFDHSGKLLASCSA   79 (317)
T ss_dssp             CEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEE-------------------CCCSSCEEEEEECTTSSEEEEEET
T ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEE-------------------eCCCCcEEEEeeeccccccccccc
Confidence            3568999999998888889999999998775433211                   112234678888883344444433


Q ss_pred             CCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEE
Q 019290          116 YFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTV  195 (343)
Q Consensus       116 ~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~  195 (343)
                      ...+...+....+........    ......+.+.+. +...++...                 .+.+..+|..+++...
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~~~~-----------------d~~~~~~~~~~~~~~~  137 (317)
T d1vyhc1          80 DMTIKLWDFQGFECIRTMHGH----DHNVSSVSIMPN-GDHIVSASR-----------------DKTIKMWEVQTGYCVK  137 (317)
T ss_dssp             TSCCCEEETTSSCEEECCCCC----SSCEEEEEECSS-SSEEEEEET-----------------TSEEEEEETTTCCEEE
T ss_pred             ccccccccccccccccccccc----cccceeeeccCC-CceEEeecc-----------------CcceeEeecccceeee
Confidence            334666666555444332211    133566777773 665553322                 4557777876665433


Q ss_pred             -eecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290          196 -MYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQG  232 (343)
Q Consensus       196 -~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~  232 (343)
                       +.........+++++++..+. +...++.|..++...
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~l~-~~~~d~~v~~~~~~~  174 (317)
T d1vyhc1         138 TFTGHREWVRMVRPNQDGTLIA-SCSNDQTVRVWVVAT  174 (317)
T ss_dssp             EEECCSSCEEEEEECTTSSEEE-EEETTSCEEEEETTT
T ss_pred             EEccCCCcceeeecccCCCEEE-EEeCCCeEEEEeecc
Confidence             333344567788888887554 445678898988764

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.04  E-value=0.0004  Score=58.38  Aligned_cols=153  Identities=10%  Similarity=-0.031  Sum_probs=96.8

Q ss_pred             CceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCC
Q 019290           37 PESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAY  116 (343)
Q Consensus        37 p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~  116 (343)
                      .......+.+..+.++..++.|..||..+++.....                   ......+..++++++++.|.++...
T Consensus       187 ~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~-------------------~~h~~~i~~v~~~p~~~~l~s~s~d  247 (340)
T d1tbga_         187 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF-------------------TGHESDINAICFFPNGNAFATGSDD  247 (340)
T ss_dssp             EEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEE-------------------CCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EeeeccccccceeEEeecCceEEEEECCCCcEEEEE-------------------eCCCCCeEEEEECCCCCEEEEEeCC
Confidence            345566677776677888999999998775433221                   1122346789999844455555433


Q ss_pred             CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEe
Q 019290          117 FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVM  196 (343)
Q Consensus       117 ~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~  196 (343)
                      ..+..++....+........  .....+..+++++ ++++.++...                 .+.|..||..+++....
T Consensus       248 ~~i~~~~~~~~~~~~~~~~~--~~~~~i~~~~~s~-~~~~l~~g~~-----------------dg~i~iwd~~~~~~~~~  307 (340)
T d1tbga_         248 ATCRLFDLRADQELMTYSHD--NIICGITSVSFSK-SGRLLLAGYD-----------------DFNCNVWDALKADRAGV  307 (340)
T ss_dssp             SCEEEEETTTTEEEEEECCT--TCCSCEEEEEECS-SSCEEEEEET-----------------TSCEEEEETTTCCEEEE
T ss_pred             CeEEEEeecccccccccccc--cccCceEEEEECC-CCCEEEEEEC-----------------CCEEEEEECCCCcEEEE
Confidence            34888998766543322111  1123467889999 5776664432                 46788899876665433


Q ss_pred             e-cCCCCcceeEEecCCCEEEEEEcCCCeEEEEE
Q 019290          197 Y-NGLSFPNGVALSNNNSFLLLAESATLKILRFW  229 (343)
Q Consensus       197 ~-~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~  229 (343)
                      . ........+++++++..|+. ...++.|..|+
T Consensus       308 ~~~H~~~V~~l~~s~d~~~l~s-~s~Dg~v~iWd  340 (340)
T d1tbga_         308 LAGHDNRVSCLGVTDDGMAVAT-GSWDSFLKIWN  340 (340)
T ss_dssp             ECCCSSCEEEEEECTTSSCEEE-EETTSCEEEEC
T ss_pred             EcCCCCCEEEEEEeCCCCEEEE-EccCCEEEEeC
Confidence            3 33455788999999986654 45678888875

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.04  E-value=1.1e-06  Score=78.77  Aligned_cols=201  Identities=8%  Similarity=-0.015  Sum_probs=111.6

Q ss_pred             CCCCeEEEEeCC-CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCccccc--ccceeeeeecCCCc
Q 019290          105 PVTCDLYIADAY-FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQR--RQYFMSIATGDRSG  181 (343)
Q Consensus       105 ~~~~~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~--~~~~~~~~~~~~~~  181 (343)
                      ++++.|||++.. +.|.++|+++.+...+.....+   ..++++++.+...++|++........  .+.. .+.......
T Consensus        81 pDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g---~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~-~~~~~~~~~  156 (441)
T d1qnia2          81 YDGKYLFINDKANTRVARIRLDIMKTDKITHIPNV---QAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGT-DFSLDNSYT  156 (441)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTC---CCEEEEEECCSSBCCEEEEEECSCEESSCSSS-CCCGGGEEE
T ss_pred             CCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCC---CCccceEEeccCCEEEEEeccCCcccccCccc-ccccccccc
Confidence            435679999865 4599999999887665433222   46889999983234677654321100  0000 000011123


Q ss_pred             eEEEEeCCCCceEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEE
Q 019290          182 RLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFW  261 (343)
Q Consensus       182 ~v~~~d~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lw  261 (343)
                      .+..+|..+.++..-..-...+..++++++|+.+|++....+.+..++......   ...+ .....|....+.++|+..
T Consensus       157 ~~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~---~d~i-~v~n~p~~~~~~~dGk~~  232 (441)
T d1qnia2         157 MFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRND---RDWV-VVFNVERIAAAVKAGNFK  232 (441)
T ss_dssp             EEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSS---BCEE-EEEEHHHHHHHHHTTCCB
T ss_pred             eEEeecCccceeeEEEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcce---EEEE-EeCCccceEEEecCCCEE
Confidence            355678876665432223356899999999999999987766655544333211   1111 111224455556667532


Q ss_pred             EEeccCCCccccccccccccccCCCcccCCCeEEEECC--CCCEEEEeeCCCCCccCCceeEEEeCCEEEEecCCCCeEE
Q 019290          262 IAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDV--NGNVVDVLDGNEGNTLNSVSEVQEYGEYLYTGSSVQPYVV  339 (343)
Q Consensus       262 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~--~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~~~~i~  339 (343)
                      .....                          ++..++.  +.+.+..++.+..  . ....+.+++.++|+++..++.|.
T Consensus       233 ~v~~~--------------------------~v~vvd~~~~~~v~~~IPvgks--P-hGv~vSPDGkyl~~~~~~~~tvs  283 (441)
T d1qnia2         233 TIGDS--------------------------KVPVVDGRGESEFTRYIPVPKN--P-HGLNTSPDGKYFIANGKLSPTVS  283 (441)
T ss_dssp             CCTTC--------------------------CCCEEECSSSCSSEEEECCBSS--C-CCEEECTTSCEEEEECTTSSBEE
T ss_pred             EeCCC--------------------------CcEEEEcccCCceEEEEeCCCC--c-cCceECCCCCEEEEeCCcCCcEE
Confidence            22111                          2334443  3445555554322  1 11223345777999999999999


Q ss_pred             EEc
Q 019290          340 VIK  342 (343)
Q Consensus       340 ~~~  342 (343)
                      +++
T Consensus       284 v~d  286 (441)
T d1qnia2         284 VIA  286 (441)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            986

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.80  E-value=9.6e-05  Score=63.96  Aligned_cols=115  Identities=11%  Similarity=0.030  Sum_probs=74.6

Q ss_pred             ccccccccCCCCCCCceEEEcCCCCeeEEEe-----------------cCCEEEEEEcCCCCeEEeeecCCCccccccCC
Q 019290           23 SKSYQQLQLPGVVGPESLAFDCNGEGPYVGV-----------------SDGRILKWKAANSGWTEFATTAPHRAREICDG   85 (343)
Q Consensus        23 ~~~~~~~~~~~~~~p~~l~~d~~g~~l~~~~-----------------~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~   85 (343)
                      ..+.+++..|....|.+|+...+|.++++..                 ..+.++.||+.  ......             
T Consensus       138 l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~--~~~~~~-------------  202 (340)
T d1v04a_         138 LLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--DVRVVA-------------  202 (340)
T ss_dssp             EEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSS--CEEEEE-------------
T ss_pred             EEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCC--ceEEEc-------------
Confidence            5566778888778999999999999444421                 13456777653  333332             


Q ss_pred             CCCcccCCCcCCeeeEEEeCCCCeEEEEeCCC-eEEEEeCCCC-eEEEcccccCCCCccCcceeEEeCCCCeEEEEeCC
Q 019290           86 STNTTLEPLCGRPLGIKFNPVTCDLYIADAYF-GLMVVGPNGG-QAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSS  162 (343)
Q Consensus        86 ~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~~-gi~~~d~~~~-~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~  162 (343)
                             .....|+||+++++++.|||+++.. .|.+|+.+.. +.+.......   ...|..+.+|+.+|.+|++...
T Consensus       203 -------~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l---~~~pDNi~~d~~~g~lwva~~p  271 (340)
T d1v04a_         203 -------EGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSF---DTLVDNISVDPVTGDLWVGCHP  271 (340)
T ss_dssp             -------EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEC---SSEEEEEEECTTTCCEEEEEES
T ss_pred             -------CCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecC---CCCCCccEEecCCCEEEEEECC
Confidence                   2345699999999667899998654 4888776533 2222111111   1357789999645899998643

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=97.65  E-value=0.00066  Score=60.88  Aligned_cols=167  Identities=10%  Similarity=0.193  Sum_probs=93.0

Q ss_pred             CCcCCeeeEEEeCCCCeEEEEeCCCe-EEEEeCCCCeEEEcccccC----CCCccCcceeEEeCC---CCeEEEEeCCcc
Q 019290           93 PLCGRPLGIKFNPVTCDLYIADAYFG-LMVVGPNGGQAQQLASSAG----GIPFRFTNDLDIDPN---TGIVYFTDSSIY  164 (343)
Q Consensus        93 ~~~~~p~gi~~~~~~~~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~----~~~~~~~~~i~~d~~---dg~l~v~~~~~~  164 (343)
                      .....|.+|++.+ +++|||+....| |++++.++++.+.+.....    ......+.+|+++|+   ++.+|++-....
T Consensus        24 ~~L~~P~~la~~p-dg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~  102 (450)
T d1crua_          24 SNLNKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKN  102 (450)
T ss_dssp             CCCSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEEC
T ss_pred             CCCCCceEEEEeC-CCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCC
Confidence            3456899999999 899999975445 9999988887766543221    111245678999872   378888632110


Q ss_pred             cccccceeeeeecCCCceEEEEeC--CCCce---EEeec----CC-CCcceeEEecCCCEEEEEEcC-------------
Q 019290          165 FQRRQYFMSIATGDRSGRLLKYDP--LKKNV---TVMYN----GL-SFPNGVALSNNNSFLLLAESA-------------  221 (343)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~v~~~d~--~~~~~---~~~~~----~~-~~~~~i~~~~d~~~lyv~~~~-------------  221 (343)
                      ..-.+  .   .......+.++..  .....   +.+..    .. -....+++.+|+. ||++--.             
T Consensus       103 ~~~~~--~---~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~-LYvs~Gd~~~~~~~~~~~~~  176 (450)
T d1crua_         103 PKSTD--K---ELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQK-IYYTIGDQGRNQLAYLFLPN  176 (450)
T ss_dssp             TTC----C---CSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSC-EEEEECCTTTTSGGGTTSCC
T ss_pred             CCCcc--c---ccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCC-EEEEecCCCccccccccccc
Confidence            00000  0   0000112333322  21111   11111    11 1245789999885 8886321             


Q ss_pred             -------------------CCeEEEEEccCcccc-------ccceeeecCCCCCCceeeCCCCCEEEEecc
Q 019290          222 -------------------TLKILRFWLQGERTT-------YTPQLFAEMPRFPDNIKSDSKGEFWIAMNS  266 (343)
Q Consensus       222 -------------------~~~i~~~~~~~~~~~-------~~~~~~~~~~~~p~~i~~d~~G~lwi~~~~  266 (343)
                                         .++|.|++.++....       ...++++..-.=|-++++|++|+||+++++
T Consensus       177 ~~~~~~~~~~~~~q~~~~~~Gkilri~~dg~~~~dnP~~~~~~~ei~a~G~RNp~g~~~~p~g~l~~~e~G  247 (450)
T d1crua_         177 QAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRNPQGLAFTPNGKLLQSEQG  247 (450)
T ss_dssp             CTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCSEEEEEEECTTSCEEEEEEC
T ss_pred             ccccCcccccccccccccccCceEEeeccccccccccccccccceEEEeccccccceeecccceeeecccc
Confidence                               278989887653110       011334321111677899999999999875

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.59  E-value=0.014  Score=48.48  Aligned_cols=71  Identities=13%  Similarity=0.056  Sum_probs=47.9

Q ss_pred             EEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCCCeEE
Q 019290           41 AFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFGLM  120 (343)
Q Consensus        41 ~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~~gi~  120 (343)
                      |++.+|+.++++..++.|..||..+++...-..                   .....+..+++.+ ++.|+.+.....+.
T Consensus        18 c~~~~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~-------------------~H~~~V~~l~~s~-~~~l~s~s~D~~i~   77 (355)
T d1nexb2          18 CLQFEDNYVITGADDKMIRVYDSINKKFLLQLS-------------------GHDGGVWALKYAH-GGILVSGSTDRTVR   77 (355)
T ss_dssp             EEEEETTEEEEEETTTEEEEEETTTTEEEEEEE-------------------CCSSCEEEEEEET-TTEEEEEETTCCEE
T ss_pred             EEEECCCEEEEEeCCCeEEEEECCCCcEEEEEE-------------------CCCCCEEEEEEcC-CCEEEEEecccccc
Confidence            455568878888999999999998765332211                   1223467899987 67777665434488


Q ss_pred             EEeCCCCeEEE
Q 019290          121 VVGPNGGQAQQ  131 (343)
Q Consensus       121 ~~d~~~~~~~~  131 (343)
                      .++....+...
T Consensus        78 iw~~~~~~~~~   88 (355)
T d1nexb2          78 VWDIKKGCCTH   88 (355)
T ss_dssp             EEETTTTEEEE
T ss_pred             ccccccccccc
Confidence            88887765443

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=97.57  E-value=0.016  Score=49.49  Aligned_cols=152  Identities=11%  Similarity=0.144  Sum_probs=82.6

Q ss_pred             cCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEe-----CCCC-eEEEEe-C
Q 019290           43 DCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFN-----PVTC-DLYIAD-A  115 (343)
Q Consensus        43 d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~-----~~~~-~l~v~~-~  115 (343)
                      +|+..+++.....++|+.||.++++...+.                      .++++.+.+.     ..+. .+.+++ .
T Consensus        37 ~p~~SlI~gTdK~~Gl~vYdL~G~~l~~~~----------------------~Gr~NNVDvr~~~~l~~~~~di~vasnR   94 (353)
T d1h6la_          37 NPQNSKLITTNKKSGLAVYSLEGKMLHSYH----------------------TGKLNNVDIRYDFPLNGKKVDIAAASNR   94 (353)
T ss_dssp             CGGGCEEEEEETTSCCEEEETTCCEEEECC----------------------SSCEEEEEEEEEEEETTEEEEEEEEEEC
T ss_pred             CcCccEEEEEcCcCCEEEEcCCCcEEEecc----------------------cCCcCccccccccccCCcceEEEEEeCC
Confidence            456675665556677999999876554431                      1233333322     1012 233443 2


Q ss_pred             C---Ce--EEEEeCCCCeEEEcccccCC--CCccCcceeEE--eCCCCeEEEEeCCcccccccceeeeeecCCCce--EE
Q 019290          116 Y---FG--LMVVGPNGGQAQQLASSAGG--IPFRFTNDLDI--DPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGR--LL  184 (343)
Q Consensus       116 ~---~g--i~~~d~~~~~~~~~~~~~~~--~~~~~~~~i~~--d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~--v~  184 (343)
                      .   ..  ++.++...+.++.+......  .....+.+++.  ++.+|.+|+-...                ..+.  .|
T Consensus        95 ~~~~~~l~~~~id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~----------------k~G~v~q~  158 (353)
T d1h6la_          95 SEGKNTIEIYAIDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTG----------------KEGEFEQY  158 (353)
T ss_dssp             CTTTCEEEEEEEETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEEC----------------SSSEEEEE
T ss_pred             cCcceeEEEEEecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEc----------------CCceEEEE
Confidence            1   23  56777776666655322111  11234778876  6544666543221                0233  34


Q ss_pred             EEeC-CCCceE----EeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCc
Q 019290          185 KYDP-LKKNVT----VMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGE  233 (343)
Q Consensus       185 ~~d~-~~~~~~----~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~  233 (343)
                      .+.. ..+.+.    +-......+.|.+++...++||+++. +.+||+++.+..
T Consensus       159 ~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde~~~LyisEE-~~Giw~~~a~~~  211 (353)
T d1h6la_         159 ELNADKNGYISGKKVRAFKMNSQTEGMAADDEYGSLYIAEE-DEAIWKFSAEPD  211 (353)
T ss_dssp             EEEECTTSSEEEEEEEEEECSSCEEEEEEETTTTEEEEEET-TTEEEEEESSTT
T ss_pred             EEEcCCCCceeeEeeeccCCCCccceEEEeCCCCcEEEecC-ccceEEEEeccC
Confidence            4432 223221    11223355789999998899999986 578999997643

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.49  E-value=0.015  Score=47.35  Aligned_cols=181  Identities=11%  Similarity=0.050  Sum_probs=95.3

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      .|..++..+++. +++...+..+..++..+++......                      ......++.+.++.+.++..
T Consensus        82 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~v~~~  138 (287)
T d1pgua2          82 QPKVASANNDGF-TAVLTNDDDLLILQSFTGDIIKSVR----------------------LNSPGSAVSLSQNYVAVGLE  138 (287)
T ss_dssp             CEEEEEECSSSE-EEEEETTSEEEEEETTTCCEEEEEE----------------------CSSCEEEEEECSSEEEEEET
T ss_pred             ceeeeeeccCCc-eEEEeecccceeeeccceeeeeecc----------------------ccceeeeeeccCcceeeecc
Confidence            466777777777 4444456667777766654332211                      01122344443566777754


Q ss_pred             CCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceE
Q 019290          116 YFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVT  194 (343)
Q Consensus       116 ~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~  194 (343)
                      ..+ +..++..+.+........   ....+..+++++ ++...++...                 .+.|..||..++...
T Consensus       139 ~~~~v~~~~~~~~~~~~~~~~~---~~~~v~~~~~s~-~~~~l~~g~~-----------------dg~i~i~d~~~~~~~  197 (287)
T d1pgua2         139 EGNTIQVFKLSDLEVSFDLKTP---LRAKPSYISISP-SETYIAAGDV-----------------MGKILLYDLQSREVK  197 (287)
T ss_dssp             TTSCEEEEETTEEEEEEECSSC---CSSCEEEEEECT-TSSEEEEEET-----------------TSCEEEEETTTTEEE
T ss_pred             ccceeeeeeccccceeeeeeec---cCCceeEEEecc-Cccccccccc-----------------cccccceeecccccc
Confidence            433 777887644332221111   113467889999 4765543322                 456888888766543


Q ss_pred             Ee--ecCCCCcceeEEecCC---------CEEEEEEcCCCeEEEEEccCccccccceeeecCCCC---CCceeeCCCCCE
Q 019290          195 VM--YNGLSFPNGVALSNNN---------SFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRF---PDNIKSDSKGEF  260 (343)
Q Consensus       195 ~~--~~~~~~~~~i~~~~d~---------~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~---p~~i~~d~~G~l  260 (343)
                      ..  .........++++|++         ..+.++...++.|+.|++.....     .+....++   ...++..+++.+
T Consensus       198 ~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~-----~~~~~~~h~~~V~~v~~~~~~~l  272 (287)
T d1pgua2         198 TSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMK-----IIKALNAHKDGVNNLLWETPSTL  272 (287)
T ss_dssp             ECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTC-----CEEETTSSTTCEEEEEEEETTEE
T ss_pred             cccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCe-----EEEEeCCCCCCeEEEEECCCCEE
Confidence            21  1122334566665533         22455666788999999754221     11112222   234555666765


Q ss_pred             EEEec
Q 019290          261 WIAMN  265 (343)
Q Consensus       261 wi~~~  265 (343)
                      ..+..
T Consensus       273 ~s~g~  277 (287)
T d1pgua2         273 VSSGA  277 (287)
T ss_dssp             EEEET
T ss_pred             EEEEC
Confidence            54443

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.37  E-value=0.022  Score=49.62  Aligned_cols=211  Identities=12%  Similarity=0.056  Sum_probs=121.2

Q ss_pred             CCCCCCceEEEc--CCCCeeEEE-ecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCC
Q 019290           32 PGVVGPESLAFD--CNGEGPYVG-VSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTC  108 (343)
Q Consensus        32 ~~~~~p~~l~~d--~~g~~l~~~-~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~  108 (343)
                      +...+|+--..+  .||+.+|+. ..++||-++|.++-+..++...                  +....++|+......+
T Consensus        83 GD~HHP~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~i------------------Pn~~~~HG~r~~~~p~  144 (459)
T d1fwxa2          83 GDLHHVHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEI------------------PNAKGIHGLRPQKWPR  144 (459)
T ss_dssp             CCBCCEEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEEC------------------SSCCSEEEEEECCSSB
T ss_pred             CCcCCCcccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEec------------------CCCCCCceeecccCCC
Confidence            466678544444  379977854 5788999999988776665421                  2334578887765456


Q ss_pred             eEEEEeC-C------------------Ce-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCe-EEEEeCCccccc
Q 019290          109 DLYIADA-Y------------------FG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGI-VYFTDSSIYFQR  167 (343)
Q Consensus       109 ~l~v~~~-~------------------~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~-l~v~~~~~~~~~  167 (343)
                      +.||... .                  .+ +..+|.++.++..-....     ..+..+..++ +|+ +|++........
T Consensus       145 T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~ID~~tm~V~~QV~V~-----g~ld~~~~s~-dGK~af~TsyNSE~g~  218 (459)
T d1fwxa2         145 SNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVS-----GNLDNCDADY-EGKWAFSTSYNSEKGM  218 (459)
T ss_dssp             CSEEEEEECSCEESSCSSSSTTCGG-EEEEEEEEETTTTEEEEEEEES-----SCCCCEEECS-SSSEEEEEESCTTCCS
T ss_pred             eEEEEccCccccccCCCCccccchhhcceEEEEEecCCceEEEEeeeC-----CChhccccCC-CCCEEEEEeccccCCc
Confidence            6666531 1                  13 457898887765433221     2367889998 466 444432211110


Q ss_pred             ---------ccc------eee---eeecC--CCceEEEEeCCC---CceEEeecCCCCcceeEEecCCCEEEEEEcCCCe
Q 019290          168 ---------RQY------FMS---IATGD--RSGRLLKYDPLK---KNVTVMYNGLSFPNGVALSNNNSFLLLAESATLK  224 (343)
Q Consensus       168 ---------~~~------~~~---~~~~~--~~~~v~~~d~~~---~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~  224 (343)
                               .++      .+.   +..+.  ..+++-.+|...   ..+..+..-...|.|+.++|||+++|+++-....
T Consensus       219 ~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~t  298 (459)
T d1fwxa2         219 TLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPT  298 (459)
T ss_dssp             SHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSB
T ss_pred             chhhcccccceEEEEechHHhHHhhhcCCcEEeCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCc
Confidence                     011      000   00000  013355566542   1233334445679999999999999999999999


Q ss_pred             EEEEEccCc------cccccceeeec--CCCCCCceeeCCCCCEEEEecc
Q 019290          225 ILRFWLQGE------RTTYTPQLFAE--MPRFPDNIKSDSKGEFWIAMNS  266 (343)
Q Consensus       225 i~~~~~~~~------~~~~~~~~~~~--~~~~p~~i~~d~~G~lwi~~~~  266 (343)
                      +.++|...=      ....+..+..+  +.--|--.++|.+|+.|.+..-
T Consensus       299 VSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~fd~~g~aytslfi  348 (459)
T d1fwxa2         299 VTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFL  348 (459)
T ss_dssp             EEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEEECTTSEEEEEETT
T ss_pred             EEEEEehhhhhhhcccCCccccEEeecccCcCccccccCCCceEEEEeec
Confidence            999997520      00011111121  1111444578999999988654

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.23  E-value=0.025  Score=46.52  Aligned_cols=154  Identities=14%  Similarity=0.074  Sum_probs=87.6

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      .....+...++..+.++..++.|..||..+.+......                   ........+.++  ++.|+.+..
T Consensus       177 ~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~-------------------~~~~~v~~~~~~--~~~l~s~s~  235 (342)
T d2ovrb2         177 TNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLT-------------------GHQSLTSGMELK--DNILVSGNA  235 (342)
T ss_dssp             SSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEEC-------------------CCCSCEEEEEEE--TTEEEEEET
T ss_pred             ccccccccCCCCEEEEEeCCCeEEEeecccceeeeEec-------------------ccccceeEEecC--CCEEEEEcC
Confidence            34566666778878888899999999987765432211                   111223455565  356666644


Q ss_pred             CCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceE-
Q 019290          116 YFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVT-  194 (343)
Q Consensus       116 ~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-  194 (343)
                      ...|..+|..+.+.......... ....+..+..++   +++++...                 .+.|..||..+++.. 
T Consensus       236 d~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~s~s~-----------------Dg~i~iwd~~tg~~i~  294 (342)
T d2ovrb2         236 DSTVKIWDIKTGQCLQTLQGPNK-HQSAVTCLQFNK---NFVITSSD-----------------DGTVKLWDLKTGEFIR  294 (342)
T ss_dssp             TSCEEEEETTTCCEEEEECSTTS-CSSCEEEEEECS---SEEEEEET-----------------TSEEEEEETTTCCEEE
T ss_pred             CCEEEEEecccccccccccccce-eeeceeecccCC---CeeEEEcC-----------------CCEEEEEECCCCCEEE
Confidence            34489999877655433222111 112233444443   44443322                 467888998877653 


Q ss_pred             Eeec-----CCCCcceeEEecCCCEEEEEEcCCC----eEEEEEccC
Q 019290          195 VMYN-----GLSFPNGVALSNNNSFLLLAESATL----KILRFWLQG  232 (343)
Q Consensus       195 ~~~~-----~~~~~~~i~~~~d~~~lyv~~~~~~----~i~~~~~~~  232 (343)
                      .+..     .......+++++++. ++++...+|    .|+++|.+-
T Consensus       295 ~~~~~~~~~~~~~v~~v~~s~~~~-~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         295 NLVTLESGGSGGVVWRIRASNTKL-VCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             EEEECTTGGGTCEEEEEEECSSEE-EEEEECSSSSSCCEEEEEECCC
T ss_pred             EEecccCCCCCCCEEEEEECCCCC-EEEEEeCCCCCeeEEEEEeCCC
Confidence            2221     112356788888875 444444444    588888753

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.18  E-value=0.042  Score=44.91  Aligned_cols=78  Identities=12%  Similarity=-0.025  Sum_probs=48.8

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCC-eEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEe
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSG-WTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIAD  114 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~  114 (343)
                      ...+|+++|+|+.|.++..++.|..||.+++. ...+....                 .....+..+++.+.++.+.++.
T Consensus        13 ~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~-----------------~h~~~V~~v~f~~~~~~~l~sg   75 (342)
T d1yfqa_          13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSL-----------------RYKHPLLCCNFIDNTDLQIYVG   75 (342)
T ss_dssp             CEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEE-----------------ECSSCEEEEEEEESSSEEEEEE
T ss_pred             CEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEec-----------------CCCCCEEEEEEeCCCCCEEEEc
Confidence            46799999999988888899999999875432 22221100                 1122456788876445444433


Q ss_pred             CCCe-EEEEeCCCCeEE
Q 019290          115 AYFG-LMVVGPNGGQAQ  130 (343)
Q Consensus       115 ~~~g-i~~~d~~~~~~~  130 (343)
                      ..+| +..++...+...
T Consensus        76 ~~d~~v~~w~~~~~~~~   92 (342)
T d1yfqa_          76 TVQGEILKVDLIGSPSF   92 (342)
T ss_dssp             ETTSCEEEECSSSSSSE
T ss_pred             ccccceeeeeccccccc
Confidence            3444 888887665433

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.17  E-value=0.011  Score=51.54  Aligned_cols=117  Identities=8%  Similarity=-0.090  Sum_probs=66.4

Q ss_pred             eEEEeC---CCCeEEEEeCCC-eEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCccc-cc-ccceee
Q 019290          100 GIKFNP---VTCDLYIADAYF-GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYF-QR-RQYFMS  173 (343)
Q Consensus       100 gi~~~~---~~~~l~v~~~~~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~-~~-~~~~~~  173 (343)
                      .+.+..   +++.||+.+..+ +|.++|+++-+...+......   ..++++...+..+..||...+... .+ .+.. .
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~---~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~-~  164 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNA---KGIHGLRPQKWPRSNYVFCNGEDETPLVNDGT-N  164 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSC---CSEEEEEECCSSBCSEEEEEECSCEESSCSSS-S
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCC---CCCceeecccCCCeEEEEccCccccccCCCCc-c
Confidence            455543   245688887654 599999998877665433322   346777765422456665432110 00 0000 0


Q ss_pred             eeecC-CCceEEEEeCCCCceEEeecCCCCcceeEEecCCCEEEEEEc
Q 019290          174 IATGD-RSGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAES  220 (343)
Q Consensus       174 ~~~~~-~~~~v~~~d~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~  220 (343)
                      +.+.. -.+.+..+|.++.++..-..-...+..++++++|+.+|++..
T Consensus       165 l~d~~~y~~~~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~Tsy  212 (459)
T d1fwxa2         165 MEDVANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSY  212 (459)
T ss_dssp             TTCGG-EEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEES
T ss_pred             ccchhhcceEEEEEecCCceEEEEeeeCCChhccccCCCCCEEEEEec
Confidence            00111 123466889887766533322345788999999999998754

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.13  E-value=0.044  Score=44.15  Aligned_cols=99  Identities=15%  Similarity=0.150  Sum_probs=59.5

Q ss_pred             EEcCC--CCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC--C
Q 019290           41 AFDCN--GEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA--Y  116 (343)
Q Consensus        41 ~~d~~--g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~--~  116 (343)
                      ...|+  |+.+.+. ..+.||.+|..+++...+..                    ..+...+..+++++..|.+...  .
T Consensus         5 ~~sPdi~G~~v~f~-~~~dl~~~d~~~g~~~~Lt~--------------------~~~~~~~p~~SPDG~~iaf~~~~~~   63 (281)
T d1k32a2           5 LLNPDIHGDRIIFV-CCDDLWEHDLKSGSTRKIVS--------------------NLGVINNARFFPDGRKIAIRVMRGS   63 (281)
T ss_dssp             CEEEEEETTEEEEE-ETTEEEEEETTTCCEEEEEC--------------------SSSEEEEEEECTTSSEEEEEEEEST
T ss_pred             ccCCCCCCCEEEEE-eCCcEEEEECCCCCEEEEec--------------------CCCcccCEEECCCCCEEEEEEeeCC
Confidence            34566  8855443 45679999999888776642                    1223456778885556665522  1


Q ss_pred             ----CeEEEEeCCCCeEEEcccccCC--CCccCcceeEEeCCCCe-EEEEeC
Q 019290          117 ----FGLMVVGPNGGQAQQLASSAGG--IPFRFTNDLDIDPNTGI-VYFTDS  161 (343)
Q Consensus       117 ----~gi~~~d~~~~~~~~~~~~~~~--~~~~~~~~i~~d~~dg~-l~v~~~  161 (343)
                          ..|+.++..+++.+.+......  .........+..+ ||+ ++++..
T Consensus        64 ~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~  114 (281)
T d1k32a2          64 SLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDP-DGNLIISTDA  114 (281)
T ss_dssp             TCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECT-TCCEEEEECT
T ss_pred             CCCceEEEEEEecCCceEEeeecCCCccCccccccccccCC-CCCEEEEEEc
Confidence                1389999999988877432211  1122345667788 465 555443

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.94  E-value=0.067  Score=43.20  Aligned_cols=162  Identities=14%  Similarity=0.096  Sum_probs=83.4

Q ss_pred             ceEEEcCCCCeeEEEecCC-EEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCC
Q 019290           38 ESLAFDCNGEGPYVGVSDG-RILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAY  116 (343)
Q Consensus        38 ~~l~~d~~g~~l~~~~~~g-~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~  116 (343)
                      ...++.+++..+.++..++ .+..|+..+.......                  .......+..+++++++..|.+++..
T Consensus       122 ~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~------------------~~~~~~~v~~~~~s~~~~~l~~g~~d  183 (287)
T d1pgua2         122 PGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDL------------------KTPLRAKPSYISISPSETYIAAGDVM  183 (287)
T ss_dssp             CEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEEC------------------SSCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             eeeeeeccCcceeeeccccceeeeeeccccceeeee------------------eeccCCceeEEEeccCcccccccccc
Confidence            4456666777566655554 4666765432211110                  01122346788999844556667544


Q ss_pred             CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCC-Cce-E
Q 019290          117 FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLK-KNV-T  194 (343)
Q Consensus       117 ~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~~~-~  194 (343)
                      ..+..+|..+++........   ....++.+++.|. +.........      .. .+..+...+.|+.||.+. ++. .
T Consensus       184 g~i~i~d~~~~~~~~~~~~~---h~~~v~~~~~~p~-~~~~~~~~~~------~~-~l~sgs~D~~i~iw~~~~~~~~~~  252 (287)
T d1pgua2         184 GKILLYDLQSREVKTSRWAF---RTSKINAISWKPA-EKGANEEEIE------ED-LVATGSLDTNIFIYSVKRPMKIIK  252 (287)
T ss_dssp             SCEEEEETTTTEEEECCSCC---CSSCEEEEEECCC-C------CCS------CC-EEEEEETTSCEEEEESSCTTCCEE
T ss_pred             ccccceeecccccccccccc---cccccceeeeccc-ccccccccCC------CC-eeEeecCCCeEEEEECCCCCeEEE
Confidence            45999999887654321111   1134667777662 3321111100      00 001112245688888653 332 2


Q ss_pred             EeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEc
Q 019290          195 VMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWL  230 (343)
Q Consensus       195 ~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~  230 (343)
                      .+........++++++++ .+ ++...++.|..|++
T Consensus       253 ~~~~h~~~V~~v~~~~~~-~l-~s~g~D~~v~iW~i  286 (287)
T d1pgua2         253 ALNAHKDGVNNLLWETPS-TL-VSSGADACIKRWNV  286 (287)
T ss_dssp             ETTSSTTCEEEEEEEETT-EE-EEEETTSCEEEEEE
T ss_pred             EeCCCCCCeEEEEECCCC-EE-EEEECCCeEEEEEE
Confidence            222334557888898876 34 44455788988874

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.93  E-value=0.0083  Score=51.90  Aligned_cols=145  Identities=14%  Similarity=0.104  Sum_probs=86.5

Q ss_pred             CceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEE-eeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           37 PESLAFDCNGEGPYVGVSDGRILKWKAANSGWTE-FATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        37 p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      +.++++.++|. +.++..++.|..||..+++... +...              .........+..+++++ +++++++..
T Consensus       187 ~~~v~~s~dg~-lasgs~Dg~i~iwd~~~~~~~~~~~~~--------------~~l~~h~~~V~~l~~sp-dg~~l~sgs  250 (393)
T d1sq9a_         187 ATSVDISERGL-IATGFNNGTVQISELSTLRPLYNFESQ--------------HSMINNSNSIRSVKFSP-QGSLLAIAH  250 (393)
T ss_dssp             CCEEEECTTSE-EEEECTTSEEEEEETTTTEEEEEEECC--------------C---CCCCCEEEEEECS-STTEEEEEE
T ss_pred             EEEEEECCCCE-EEEEeCCCcEEEEeecccccccccccc--------------cccccccceEEEccccc-ccceeeeec
Confidence            66899999984 7788899999999988754322 2110              01112233467899999 555444422


Q ss_pred             CC---e-EEEEeCCCCeEEEccccc---------CCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCce
Q 019290          116 YF---G-LMVVGPNGGQAQQLASSA---------GGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGR  182 (343)
Q Consensus       116 ~~---g-i~~~d~~~~~~~~~~~~~---------~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~  182 (343)
                      .+   + +..+|.++++........         .......++.+++.+ |+++.++...                 .+.
T Consensus       251 ~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fsp-d~~~l~S~s~-----------------D~~  312 (393)
T d1sq9a_         251 DSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAGW-----------------DGK  312 (393)
T ss_dssp             EETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECS-SSSEEEEEET-----------------TSE
T ss_pred             CCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCC-CCCeeEEECC-----------------CCE
Confidence            22   3 677899887644322110         001124578899999 5888776543                 567


Q ss_pred             EEEEeCCCCceEEeecCC-----CCcceeEEecCCCEE
Q 019290          183 LLKYDPLKKNVTVMYNGL-----SFPNGVALSNNNSFL  215 (343)
Q Consensus       183 v~~~d~~~~~~~~~~~~~-----~~~~~i~~~~d~~~l  215 (343)
                      |..||.++++......+-     .....+++++++..+
T Consensus       313 v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~  350 (393)
T d1sq9a_         313 LRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSL  350 (393)
T ss_dssp             EEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBC
T ss_pred             EEEEECCCCCEEEEECCcCCcccCCccEEEECCCCCEE
Confidence            888998888754332211     112356677777643

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.86  E-value=0.014  Score=51.67  Aligned_cols=145  Identities=14%  Similarity=0.035  Sum_probs=86.2

Q ss_pred             CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290           36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA  115 (343)
Q Consensus        36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~  115 (343)
                      .+.++.+-+++..+|.  .++.++.+|..+++...+.....              .........+..++|++..|.++..
T Consensus        18 ~~~~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~--------------~~~~~~~i~~~~~SpDg~~i~~~~~   81 (470)
T d2bgra1          18 KLYSLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENST--------------FDEFGHSINDYSISPDGQFILLEYN   81 (470)
T ss_dssp             CCCCCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTT--------------TTTSSSCCCEEEECTTSSEEEEEEE
T ss_pred             cccCCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhh--------------hhhccCccceeEECCCCCEEEEEEC
Confidence            3556777788885553  57789999999887666543211              1122233567889995566666531


Q ss_pred             C--------Ce-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEE
Q 019290          116 Y--------FG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKY  186 (343)
Q Consensus       116 ~--------~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~  186 (343)
                      .        .+ ++.+|.++++...+....     .......+.| ||..++...                  ...++.+
T Consensus        82 ~~~~~r~s~~~~~~l~d~~~~~~~~l~~~~-----~~~~~~~~SP-DG~~ia~~~------------------~~~l~~~  137 (470)
T d2bgra1          82 YVKQWRHSYTASYDIYDLNKRQLITEERIP-----NNTQWVTWSP-VGHKLAYVW------------------NNDIYVK  137 (470)
T ss_dssp             EEECSSSCEEEEEEEEETTTTEECCSSCCC-----TTEEEEEECS-STTCEEEEE------------------TTEEEEE
T ss_pred             CcceeeeccCceEEEEECCCCcccccccCC-----cccccccccc-CcceeeEee------------------cccceEE
Confidence            1        23 788999998876553221     2345667778 466433211                  2346666


Q ss_pred             eCCCCceEEeecC-------------------CCCcceeEEecCCCEEEEEEc
Q 019290          187 DPLKKNVTVMYNG-------------------LSFPNGVALSNNNSFLLLAES  220 (343)
Q Consensus       187 d~~~~~~~~~~~~-------------------~~~~~~i~~~~d~~~lyv~~~  220 (343)
                      +..+++...+...                   .....++.++|||+.+.+...
T Consensus       138 ~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~  190 (470)
T d2bgra1         138 IEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQF  190 (470)
T ss_dssp             SSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEE
T ss_pred             ECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEe
Confidence            6665554433211                   123456789999998766543

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.83  E-value=0.022  Score=49.06  Aligned_cols=117  Identities=8%  Similarity=-0.010  Sum_probs=72.1

Q ss_pred             eeeEEEeCCCCeEEEEeCCCe-EEEEeCCCCeEEEcccccCC--CCccCcceeEEeCCCCeEEEEeCCcccccccceeee
Q 019290           98 PLGIKFNPVTCDLYIADAYFG-LMVVGPNGGQAQQLASSAGG--IPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSI  174 (343)
Q Consensus        98 p~gi~~~~~~~~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~--~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~  174 (343)
                      +..+++.+ ++.|..+ ..+| |..+|.++++..........  .....++.+++.| ||++.++....           
T Consensus       187 ~~~v~~s~-dg~lasg-s~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp-dg~~l~sgs~D-----------  252 (393)
T d1sq9a_         187 ATSVDISE-RGLIATG-FNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP-QGSLLAIAHDS-----------  252 (393)
T ss_dssp             CCEEEECT-TSEEEEE-CTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECS-STTEEEEEEEE-----------
T ss_pred             EEEEEECC-CCEEEEE-eCCCcEEEEeecccccccccccccccccccceEEEccccc-ccceeeeecCC-----------
Confidence            45688887 6766655 3455 88999988765432221111  1124578899999 58877754320           


Q ss_pred             eecCCCceEEEEeCCCCceEEee--------------cCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290          175 ATGDRSGRLLKYDPLKKNVTVMY--------------NGLSFPNGVALSNNNSFLLLAESATLKILRFWLQG  232 (343)
Q Consensus       175 ~~~~~~~~v~~~d~~~~~~~~~~--------------~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~  232 (343)
                         ...+.|..||.++++.....              ..-.....++|+|+++.| ++...++.|..||+..
T Consensus       253 ---~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l-~S~s~D~~v~vWd~~~  320 (393)
T d1sq9a_         253 ---NSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETL-CSAGWDGKLRFWDVKT  320 (393)
T ss_dssp             ---TTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEE-EEEETTSEEEEEETTT
T ss_pred             ---CCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCee-EEECCCCEEEEEECCC
Confidence               00123555677666543211              112335779999999855 5666789999999875

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.51  E-value=0.14  Score=40.87  Aligned_cols=208  Identities=14%  Similarity=0.061  Sum_probs=102.8

Q ss_pred             ceEEEcCCCCeeEEE-ec--CCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEe
Q 019290           38 ESLAFDCNGEGPYVG-VS--DGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIAD  114 (343)
Q Consensus        38 ~~l~~d~~g~~l~~~-~~--~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~  114 (343)
                      .+.+++|||+.+.+. ..  ...++.++..++....+..                    .........+++++..+.+..
T Consensus        42 ~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~spdg~~i~~~~  101 (269)
T d2hqsa1          42 MSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS--------------------FPRHNGAPAFSPDGSKLAFAL  101 (269)
T ss_dssp             EEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEEC--------------------CSSCEEEEEECTTSSEEEEEE
T ss_pred             eeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEee--------------------eecccccceecCCCCeeeEee
Confidence            367899999966543 22  2357888877766554431                    222344566777444554443


Q ss_pred             CCCe---EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCC
Q 019290          115 AYFG---LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKK  191 (343)
Q Consensus       115 ~~~g---i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~  191 (343)
                      ...+   +.................     ..............++++...               .+...++.++.+++
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~---------------~g~~~i~~~~~~~~  161 (269)
T d2hqsa1         102 SKTGSLNLYVMDLASGQIRQVTDGR-----SNNTEPTWFPDSQNLAFTSDQ---------------AGRPQVYKVNINGG  161 (269)
T ss_dssp             CTTSSCEEEEEETTTCCEEECCCCS-----SCEEEEEECTTSSEEEEEECT---------------TSSCEEEEEETTSS
T ss_pred             ecCCccceeecccccccceeeeecc-----ccccccccccccccceecccc---------------cCCceEeeeecccc
Confidence            3222   333333323222221111     011111222312333333221               11346888888776


Q ss_pred             ceEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCC-EEEEeccCCCc
Q 019290          192 NVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGE-FWIAMNSARGK  270 (343)
Q Consensus       192 ~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-lwi~~~~~~~~  270 (343)
                      ....+...........++++++.+++.....+....+..+...  ...+.. ...+.......++||+ |...... +. 
T Consensus       162 ~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~--~~~~~~-~~~~~~~~p~~SPDG~~i~f~s~~-~~-  236 (269)
T d2hqsa1         162 APQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT--GGVQVL-SSTFLDETPSLAPNGTMVIYSSSQ-GM-  236 (269)
T ss_dssp             CCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTT--CCEEEC-CCSSSCEEEEECTTSSEEEEEEEE-TT-
T ss_pred             cceeeecccccccccccccccceeEEEeecCCceeeeEeeccc--ccceEe-ecCccccceEECCCCCEEEEEEcC-CC-
Confidence            6655544333344567889999877765554444333333211  222222 2222223457899996 3333322 11 


Q ss_pred             cccccccccccccCCCcccCCCeEEEECCCCCEEEEeeCC
Q 019290          271 IESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGN  310 (343)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~  310 (343)
                                          ...|+.++.+|+....+...
T Consensus       237 --------------------~~~l~~~~~dg~~~~~lt~~  256 (269)
T d2hqsa1         237 --------------------GSVLNLVSTDGRFKARLPAT  256 (269)
T ss_dssp             --------------------EEEEEEEETTSCCEEECCCS
T ss_pred             --------------------CcEEEEEECCCCCEEEEeCC
Confidence                                23778888888776655443

>d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase
family: Oligoxyloglucan reducing end-specific cellobiohydrolase
domain: Oligoxyloglucan reducing end-specific cellobiohydrolase
species: Yeast (Geotrichum sp. M128) [TaxId: 203496]

Probab=96.51  E-value=0.14  Score=44.51  Aligned_cols=173  Identities=14%  Similarity=0.128  Sum_probs=96.7

Q ss_pred             ccccccCCCCCCCceEEEcCC-CCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEE
Q 019290           25 SYQQLQLPGVVGPESLAFDCN-GEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKF  103 (343)
Q Consensus        25 ~~~~~~~~~~~~p~~l~~d~~-g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~  103 (343)
                      +.+++.+++.-...+|+++|. .+++|++...|+||+-+..+..|+.+.......             .........|++
T Consensus         2 ~w~~~~~~~gg~~~~i~~~P~~~~~~ya~~~~gGv~~S~dgG~tW~~~~~~~~~~-------------~~~~~~~~~iav   68 (427)
T d2ebsa1           2 EFKNVAIGGGGYITGIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDFIEAQ-------------DMNIMGTESIAL   68 (427)
T ss_dssp             EEEECCCCBCSCEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCCGG-------------GGGGCSEEEEEE
T ss_pred             cCeEcCCCCCCcEEEEEECCCCCCEEEEEecCCCEEEEECCCCceEECCCCCCCC-------------CcccccEeEEEE
Confidence            456777775446789999986 567888888888999877777787653211100             011223567899


Q ss_pred             eCCC-CeEEEEeCC------CeEEEEeCCCCeEEEcccccC----CCCccCcceeEEeCCC-CeEEEEeCCcccccccce
Q 019290          104 NPVT-CDLYIADAY------FGLMVVGPNGGQAQQLASSAG----GIPFRFTNDLDIDPNT-GIVYFTDSSIYFQRRQYF  171 (343)
Q Consensus       104 ~~~~-~~l~v~~~~------~gi~~~d~~~~~~~~~~~~~~----~~~~~~~~~i~~d~~d-g~l~v~~~~~~~~~~~~~  171 (343)
                      ++.+ +.+|++...      .+|++-.=.+..++.+.....    .........++++|.+ +.+|++..          
T Consensus        69 dp~np~~vy~~tg~~~~~~~~gi~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~i~v~P~~~~~v~~~~~----------  138 (427)
T d2ebsa1          69 DPNNPDRLYLAQGRYVGDEWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTR----------  138 (427)
T ss_dssp             ETTEEEEEEEEECSCTTSSCCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEECTTCTTCEEEECS----------
T ss_pred             CCCCCCEEEEEeccccCCcCccEEEeCCCCccceeecCCcccCccccCccceeEEEECCCccCccccccc----------
Confidence            9833 478887421      345554433334444422111    1111334568999742 46888543          


Q ss_pred             eeeeecCCCceEEEEeCCCCceEEeecC------CCCcceeEEecC-CCEEEEEEcCCCeEEEE
Q 019290          172 MSIATGDRSGRLLKYDPLKKNVTVMYNG------LSFPNGVALSNN-NSFLLLAESATLKILRF  228 (343)
Q Consensus       172 ~~~~~~~~~~~v~~~d~~~~~~~~~~~~------~~~~~~i~~~~d-~~~lyv~~~~~~~i~~~  228 (343)
                              .++|++-.-.+...+.+...      ......+.++|. ...+|++....+.|++=
T Consensus       139 --------~~gl~~S~D~G~tW~~~~~~~~~~~~~~~~~~i~~~p~~~~~~y~~~~~~~giy~S  194 (427)
T d2ebsa1         139 --------TEGIWKSSDRAKTWTNVTSIPDAFTNGIGYTSVIFDPERNGTIYASATAPQGMYVT  194 (427)
T ss_dssp             --------SSCEEEESSTTSSCEECTTSSCCCCSSSCEEEEEECTTSTTCEEEEESSTTCEEEE
T ss_pred             --------ccceeeecCCCceeeecccCcccccCCccceEEEecccccceeeeeeeecccceec
Confidence                    34577654333333332211      111345666653 45688776666678763

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=96.47  E-value=0.21  Score=42.36  Aligned_cols=189  Identities=14%  Similarity=0.172  Sum_probs=97.2

Q ss_pred             CCeEEEEe-CCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEe------CCCCe--EEEEeCCcccccccceeeeeec
Q 019290          107 TCDLYIAD-AYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDID------PNTGI--VYFTDSSIYFQRRQYFMSIATG  177 (343)
Q Consensus       107 ~~~l~v~~-~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d------~~dg~--l~v~~~~~~~~~~~~~~~~~~~  177 (343)
                      ...|.+++ ...||+.||+++.+++.+.   .    ..+|.+.+-      .. ..  +++++...             .
T Consensus        39 ~~SlI~gTdK~~Gl~vYdL~G~~l~~~~---~----Gr~NNVDvr~~~~l~~~-~~di~vasnR~~-------------~   97 (353)
T d1h6la_          39 QNSKLITTNKKSGLAVYSLEGKMLHSYH---T----GKLNNVDIRYDFPLNGK-KVDIAAASNRSE-------------G   97 (353)
T ss_dssp             GGCEEEEEETTSCCEEEETTCCEEEECC---S----SCEEEEEEEEEEEETTE-EEEEEEEEECCT-------------T
T ss_pred             CccEEEEEcCcCCEEEEcCCCcEEEecc---c----CCcCccccccccccCCc-ceEEEEEeCCcC-------------c
Confidence            34555554 3467999999866655542   1    124444322      21 21  23333320             0


Q ss_pred             CCCceEEEEeCCCCceEEee-------cCCCCcceeEE--ecCCCEEE-EEEcCCCeEEEEEccC--cccc--ccceeee
Q 019290          178 DRSGRLLKYDPLKKNVTVMY-------NGLSFPNGVAL--SNNNSFLL-LAESATLKILRFWLQG--ERTT--YTPQLFA  243 (343)
Q Consensus       178 ~~~~~v~~~d~~~~~~~~~~-------~~~~~~~~i~~--~~d~~~ly-v~~~~~~~i~~~~~~~--~~~~--~~~~~~~  243 (343)
                      ...-.+|.+++..+.+..+.       ..+..+.|+|+  ++..+.+| +.....+.+.+|.+..  +..+  ...+.+ 
T Consensus        98 ~~~l~~~~id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f-  176 (353)
T d1h6la_          98 KNTIEIYAIDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAF-  176 (353)
T ss_dssp             TCEEEEEEEETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEE-
T ss_pred             ceeEEEEEecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeecc-
Confidence            00223667776655544332       22345789998  44433343 3455678888887642  2210  111122 


Q ss_pred             cCCCCCCceeeCCC-CCEEEEeccCCCccccccccccccccCCCcccCCCeEEEEC--CC-CCEEE-EeeCCCCCccCCc
Q 019290          244 EMPRFPDNIKSDSK-GEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFD--VN-GNVVD-VLDGNEGNTLNSV  318 (343)
Q Consensus       244 ~~~~~p~~i~~d~~-G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d--~~-g~~~~-~~~~~~~~~~~~~  318 (343)
                      ..+..+.|.++|.+ +.|||+.-.                         .++++++  ++ +.... ......+....-+
T Consensus       177 ~~~~q~EGCVvDde~~~LyisEE~-------------------------~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~  231 (353)
T d1h6la_         177 KMNSQTEGMAADDEYGSLYIAEED-------------------------EAIWKFSAEPDGGSNGTVIDRADGRHLTPDI  231 (353)
T ss_dssp             ECSSCEEEEEEETTTTEEEEEETT-------------------------TEEEEEESSTTSCSCCEEEEECSSSSCCSCE
T ss_pred             CCCCccceEEEeCCCCcEEEecCc-------------------------cceEEEEeccCCCccceeeecccCccccCCc
Confidence            24455788888875 789999754                         3667775  33 22211 2121112122223


Q ss_pred             eeEE---E-e-CCEEEEecCCCCeEEEEc
Q 019290          319 SEVQ---E-Y-GEYLYTGSSVQPYVVVIK  342 (343)
Q Consensus       319 ~~~~---~-~-~g~l~i~~~~~~~i~~~~  342 (343)
                      -++.   . + .|.|.+++-..++..+|+
T Consensus       232 EGlaiy~~~~~~GylivSsQG~n~f~vyd  260 (353)
T d1h6la_         232 EGLTIYYAADGKGYLLASSQGNSSYAIYE  260 (353)
T ss_dssp             EEEEEEECGGGCEEEEEEEGGGTEEEEEE
T ss_pred             cccEEEEcCCCCeEEEEEcCCCCeEEEEe
Confidence            2222   1 2 568888888888888875

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.45  E-value=0.17  Score=41.29  Aligned_cols=146  Identities=10%  Similarity=0.075  Sum_probs=85.1

Q ss_pred             EEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCCCeEE
Q 019290           41 AFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFGLM  120 (343)
Q Consensus        41 ~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~~gi~  120 (343)
                      ...++++.+..+..++.+..+|..+.+.....                   .........+.+++.+..++.+.....+.
T Consensus       166 ~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~d~~i~  226 (355)
T d1nexb2         166 TVSGHGNIVVSGSYDNTLIVWDVAQMKCLYIL-------------------SGHTDRIYSTIYDHERKRCISASMDTTIR  226 (355)
T ss_dssp             EEEEETTEEEEEETTSCEEEEETTTTEEEEEE-------------------CCCSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred             ccccccceeeeecccceeeeeecccccceeee-------------------eccccccccccccccceeeecccccceEE
Confidence            34456776777778888999988765433221                   11222356777888555666665444488


Q ss_pred             EEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEeecCC
Q 019290          121 VVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGL  200 (343)
Q Consensus       121 ~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~  200 (343)
                      .++.+++..........    ..+..+++++  +.++.+..                  .+.|..+|..+..... ....
T Consensus       227 i~d~~~~~~~~~~~~h~----~~v~~~~~~~--~~l~~~~~------------------dg~i~iwd~~~~~~~~-~~~~  281 (355)
T d1nexb2         227 IWDLENGELMYTLQGHT----ALVGLLRLSD--KFLVSAAA------------------DGSIRGWDANDYSRKF-SYHH  281 (355)
T ss_dssp             EEETTTCCEEEEECCCS----SCCCEEEECS--SEEEEECT------------------TSEEEEEETTTCCEEE-EEEC
T ss_pred             eeecccccccccccccc----cccccccccc--ceeeeeec------------------ccccccccccccceec-cccc
Confidence            99998876544322211    3456777765  35544322                  4568888887554432 2112


Q ss_pred             CCcce-eEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290          201 SFPNG-VALSNNNSFLLLAESATLKILRFWLQG  232 (343)
Q Consensus       201 ~~~~~-i~~~~d~~~lyv~~~~~~~i~~~~~~~  232 (343)
                      ..... .++.+++. ++++.. ++.|..|++..
T Consensus       282 ~~~~~~~~~~~~~~-~l~~g~-d~~i~vwd~~t  312 (355)
T d1nexb2         282 TNLSAITTFYVSDN-ILVSGS-ENQFNIYNLRS  312 (355)
T ss_dssp             TTCCCCCEEEECSS-EEEEEE-TTEEEEEETTT
T ss_pred             CCceEEEEEcCCCC-EEEEEe-CCEEEEEECCC
Confidence            22333 34556665 445543 67999999865

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.71  E-value=0.2  Score=43.84  Aligned_cols=118  Identities=12%  Similarity=0.038  Sum_probs=73.1

Q ss_pred             eEEEeCCCCeEEEEeCCCeEEEEeCCCCeEEEcccccC-CCCccCcceeEEeCCCCe-EEE-EeCCcccccccceeeeee
Q 019290          100 GIKFNPVTCDLYIADAYFGLMVVGPNGGQAQQLASSAG-GIPFRFTNDLDIDPNTGI-VYF-TDSSIYFQRRQYFMSIAT  176 (343)
Q Consensus       100 gi~~~~~~~~l~v~~~~~gi~~~d~~~~~~~~~~~~~~-~~~~~~~~~i~~d~~dg~-l~v-~~~~~~~~~~~~~~~~~~  176 (343)
                      .+...+ ++.++.. ..++++.+|.++++.+.+..... ......+.++.+.| ||+ |.+ .+....+          .
T Consensus        21 ~~~W~~-d~~~~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~Sp-Dg~~i~~~~~~~~~~----------r   87 (470)
T d2bgra1          21 SLRWIS-DHEYLYK-QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISP-DGQFILLEYNYVKQW----------R   87 (470)
T ss_dssp             CCEECS-SSEEEEE-SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECT-TSSEEEEEEEEEECS----------S
T ss_pred             CCEeCC-CCEEEEE-cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECC-CCCEEEEEECCccee----------e
Confidence            344455 5555544 35679999999998766543221 11124577889999 576 333 2211100          0


Q ss_pred             cCCCceEEEEeCCCCceEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290          177 GDRSGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQG  232 (343)
Q Consensus       177 ~~~~~~v~~~d~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~  232 (343)
                      -...+.++.+|.++++...+...........++|||+.+.+..  ++.++.++..+
T Consensus        88 ~s~~~~~~l~d~~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~~--~~~l~~~~~~~  141 (470)
T d2bgra1          88 HSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVW--NNDIYVKIEPN  141 (470)
T ss_dssp             SCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEE--TTEEEEESSTT
T ss_pred             eccCceEEEEECCCCcccccccCCccccccccccCcceeeEee--cccceEEECCC
Confidence            1114568899999888766554444566788999999877653  56788888765

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=95.46  E-value=0.86  Score=41.11  Aligned_cols=38  Identities=13%  Similarity=0.021  Sum_probs=26.4

Q ss_pred             CCeEEEECC-CCCEEEEeeCCCCCccCCceeEEEeCCEEEE
Q 019290          291 DPVGVKFDV-NGNVVDVLDGNEGNTLNSVSEVQEYGEYLYT  330 (343)
Q Consensus       291 ~~~v~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i  330 (343)
                      .+.+++||. +|+++=.+..+.+.....++...  +|+.||
T Consensus       484 dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~--dGkqYi  522 (571)
T d2ad6a1         484 DGYLKALDNKDGKELWNFKMPSGGIGSPMTYSF--KGKQYI  522 (571)
T ss_dssp             TSEEEEEETTTCCEEEEEECSSCCCSCCEEEEE--TTEEEE
T ss_pred             CCeEEEEECCCCcEEEEEECCCCceecceEEEE--CCEEEE
Confidence            468889997 69998888776654333444433  788887

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.28  E-value=0.33  Score=39.05  Aligned_cols=148  Identities=11%  Similarity=0.048  Sum_probs=75.8

Q ss_pred             CceEEEcCCCCeeEEEecCCEEEEEEcCCCCeE-EeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCC-eEEEEe
Q 019290           37 PESLAFDCNGEGPYVGVSDGRILKWKAANSGWT-EFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTC-DLYIAD  114 (343)
Q Consensus        37 p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~-~l~v~~  114 (343)
                      ...+.....++.++++..++.+..|+..+.... .....                 .............+.++ .+..+.
T Consensus       151 ~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~s  213 (342)
T d1yfqa_         151 NKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEE-----------------SGLKYQIRDVALLPKEQEGYACSS  213 (342)
T ss_dssp             CCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEE-----------------CSCSSCEEEEEECSGGGCEEEEEE
T ss_pred             eeeeeeeccCCceeeecCCCcEEEEecccCcccceeeee-----------------cccccceeeeEeecCCCCEEEeec
Confidence            345566777777778888999999987653311 11000                 01111122333333233 333333


Q ss_pred             CCCeEEEEeCCCCeE---------EEccccc--CCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceE
Q 019290          115 AYFGLMVVGPNGGQA---------QQLASSA--GGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRL  183 (343)
Q Consensus       115 ~~~gi~~~d~~~~~~---------~~~~~~~--~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v  183 (343)
                      ....+..++.+....         .......  .......++.++++| ++.++++...                 .+.|
T Consensus       214 ~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp-~~~~lasg~~-----------------Dg~v  275 (342)
T d1yfqa_         214 IDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP-RHKFLYTAGS-----------------DGII  275 (342)
T ss_dssp             TTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECT-TTCCEEEEET-----------------TSCE
T ss_pred             CCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecC-CccEEEEECC-----------------CCEE
Confidence            222344444332110         0000000  111123467889999 4776665433                 5679


Q ss_pred             EEEeCCCCceEEeecCCCCcceeEEecCCCEEEEEE
Q 019290          184 LKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAE  219 (343)
Q Consensus       184 ~~~d~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~  219 (343)
                      ..||.++++...-.........++++++++.+.++.
T Consensus       276 ~vWD~~~~~~l~~~~~~~~~~~~~~s~~~~~l~~a~  311 (342)
T d1yfqa_         276 SCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLAT  311 (342)
T ss_dssp             EEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEE
T ss_pred             EEEECCCCcEEEEecCCCCCEEEEEEeCCCEEEEEE
Confidence            999988776533233333445678888888776654

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.19  E-value=0.57  Score=37.49  Aligned_cols=223  Identities=13%  Similarity=0.058  Sum_probs=108.0

Q ss_pred             EEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC----------CCeEEEEeCCC
Q 019290           57 RILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA----------YFGLMVVGPNG  126 (343)
Q Consensus        57 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~----------~~gi~~~d~~~  126 (343)
                      .+..||+.+++|..+...+                  ....-+.++..  ++.||+...          .+.++.+|+.+
T Consensus        20 ~~~~yd~~t~~W~~~~~~p------------------~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~   79 (288)
T d1zgka1          20 YLEAYNPSNGTWLRLADLQ------------------VPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMT   79 (288)
T ss_dssp             CEEEEETTTTEEEECCCCS------------------SCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTT
T ss_pred             eEEEEECCCCeEEECCCCC------------------CccceeEEEEE--CCEEEEEeCcccCCCCccccchhhhccccc
Confidence            5789999999998864211                  11112344454  567777621          13478999998


Q ss_pred             CeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEeecCCCCc--c
Q 019290          127 GQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSFP--N  204 (343)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~--~  204 (343)
                      .+++.+......   ..-+..++.  ++.+|+......            ........++++.+.............  .
T Consensus        80 ~~w~~~~~~p~~---r~~~~~~~~--~~~i~~~gg~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~  142 (288)
T d1zgka1          80 NQWSPCAPMSVP---RNRIGVGVI--DGHIYAVGGSHG------------CIHHNSVERYEPERDEWHLVAPMLTRRIGV  142 (288)
T ss_dssp             TEEEECCCCSSC---CBTCEEEEE--TTEEEEECCEET------------TEECCCEEEEETTTTEEEECCCCSSCCBSC
T ss_pred             ccccccccccce---ecceecccc--ceeeEEecceec------------ccccceeeeeccccCccccccccccccccc
Confidence            888877543322   122334444  378887532100            011234677888766654432222111  2


Q ss_pred             eeEEecCCCEEEEEEcC-----CCeEEEEEccCccccccceeeecCCC-CCCceeeCCCCCEEEEeccCCCccccccccc
Q 019290          205 GVALSNNNSFLLLAESA-----TLKILRFWLQGERTTYTPQLFAEMPR-FPDNIKSDSKGEFWIAMNSARGKIESNKKTA  278 (343)
Q Consensus       205 ~i~~~~d~~~lyv~~~~-----~~~i~~~~~~~~~~~~~~~~~~~~~~-~p~~i~~d~~G~lwi~~~~~~~~~~~~~~~~  278 (343)
                      ..++.  ...+|+..-.     ...+++|++..+    +......... ....-+.-..+++++.........       
T Consensus       143 ~~~~~--~~~~~~~GG~~~~~~~~~~~~~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~i~GG~~~~~~-------  209 (288)
T d1zgka1         143 GVAVL--NRLLYAVGGFDGTNRLNSAECYYPERN----EWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQ-------  209 (288)
T ss_dssp             EEEEE--TTEEEEECCBCSSCBCCCEEEEETTTT----EEEECCCCSSCCBSCEEEEETTEEEEECCBCSSSB-------
T ss_pred             eeeee--eecceEecCcccccccceEEEeecccc----ccccccccccccccccccceeeeEEEecCcccccc-------
Confidence            22222  2345543211     345777776542    1111111111 011111222466777643311111       


Q ss_pred             cccccCCCcccCCCeEEEECCCCCEEEEeeCCCCCccCCceeEEEeCCEEEEec-----CCCCeEEEEcC
Q 019290          279 FCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEGNTLNSVSEVQEYGEYLYTGS-----SVQPYVVVIKA  343 (343)
Q Consensus       279 ~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~-----~~~~~i~~~~~  343 (343)
                                  .....++|...+...........  .....+...+++|||-+     ...+.+.+||+
T Consensus       210 ------------~~~~~~~~~~~~~~~~~~~~p~~--r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~  265 (288)
T d1zgka1         210 ------------LNSVERYDVETETWTFVAPMKHR--RSALGITVHQGRIYVLGGYDGHTFLDSVECYDP  265 (288)
T ss_dssp             ------------CCCEEEEETTTTEEEECCCCSSC--CBSCEEEEETTEEEEECCBCSSCBCCEEEEEET
T ss_pred             ------------ccceeeeeecceeeecccCccCc--ccceEEEEECCEEEEEecCCCCeecceEEEEEC
Confidence                        23667788766655554322221  12223344588999753     33345667764

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.96  E-value=0.69  Score=37.14  Aligned_cols=145  Identities=9%  Similarity=0.028  Sum_probs=76.2

Q ss_pred             EEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCCCeEE
Q 019290           41 AFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFGLM  120 (343)
Q Consensus        41 ~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~~gi~  120 (343)
                      +++.+|+.+.++..++.|..||..+++.....                   ......+..+.+.+  +.|+.+.....+.
T Consensus        22 ~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~-------------------~~h~~~V~~v~~~~--~~l~s~s~D~~~~   80 (342)
T d2ovrb2          22 CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTL-------------------VGHTGGVWSSQMRD--NIIISGSTDRTLK   80 (342)
T ss_dssp             EEEEETTEEEEEETTSCEEEEETTTCCEEEEC-------------------CCCSSCEEEEEEET--TEEEEEETTSCEE
T ss_pred             EEEECCCEEEEEeCCCeEEEEECCCCCEEEEE-------------------eCCCCCEEEEEeCC--Cccccceeccccc
Confidence            46677898888889999999999876643321                   11223466788875  4555554333377


Q ss_pred             EEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEeecCC
Q 019290          121 VVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGL  200 (343)
Q Consensus       121 ~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~  200 (343)
                      .++..............    ..+......+  ..+..+..                  .+.+..++..+++........
T Consensus        81 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~--~~~~~~~~------------------d~~i~~~~~~~~~~~~~~~~~  136 (342)
T d2ovrb2          81 VWNAETGECIHTLYGHT----STVRCMHLHE--KRVVSGSR------------------DATLRVWDIETGQCLHVLMGH  136 (342)
T ss_dssp             EEETTTTEEEEEECCCS----SCEEEEEEET--TEEEEEET------------------TSEEEEEESSSCCEEEEEECC
T ss_pred             ccccccccceecccccc----eeEeeeeccc--cccccccc------------------ceeEEEeecccccceeeeecc
Confidence            77776554433221111    1122222222  33333222                  345666776666554332222


Q ss_pred             CCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290          201 SFPNGVALSNNNSFLLLAESATLKILRFWLQG  232 (343)
Q Consensus       201 ~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~  232 (343)
                      ...... .......+. .....+.|..++...
T Consensus       137 ~~~~~~-~~~~~~~~~-~~~~d~~i~~~d~~~  166 (342)
T d2ovrb2         137 VAAVRC-VQYDGRRVV-SGAYDFMVKVWDPET  166 (342)
T ss_dssp             SSCEEE-EEECSSCEE-EEETTSCEEEEEGGG
T ss_pred             ccccee-eccccceee-eecCCCeEEEeeccc
Confidence            222222 223333333 444578888888654

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=94.80  E-value=1.3  Score=39.68  Aligned_cols=122  Identities=13%  Similarity=0.089  Sum_probs=66.5

Q ss_pred             CCeeEEEecCCEEEEEEcCCCCeE-EeeecCCCccccccCCCCCcccCCC-cCCeeeEEEeCCCCeEEEEeCCCeEEEEe
Q 019290           46 GEGPYVGVSDGRILKWKAANSGWT-EFATTAPHRAREICDGSTNTTLEPL-CGRPLGIKFNPVTCDLYIADAYFGLMVVG  123 (343)
Q Consensus        46 g~~l~~~~~~g~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~gi~~~~~~~~l~v~~~~~gi~~~d  123 (343)
                      |. +|+.+.++.|+.+|.++++.. ++.......          ...... .....+++..  ++.+|+++....|+.+|
T Consensus        67 g~-vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~----------~~~~~~~~~~~~~~~~~--~~~v~~~~~~g~l~Ald  133 (560)
T d1kv9a2          67 GV-IYTSMSWSRVIAVDAASGKELWRYDPEVAKV----------KARTSCCDAVNRGVALW--GDKVYVGTLDGRLIALD  133 (560)
T ss_dssp             TE-EEEEEGGGEEEEEETTTCCEEEEECCCCCGG----------GGGGCTTCSCCCCCEEE--BTEEEEECTTSEEEEEE
T ss_pred             CE-EEEECCCCeEEEEeCCCCCEEEEECCCCCcc----------ccccccccccccCccee--CCeEEEEeCCCEEEEEE
Confidence            44 888889999999999987643 221111000          000011 1112355555  57899986556699999


Q ss_pred             CCCCeEEEcccccCCCCccCc-ceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceE
Q 019290          124 PNGGQAQQLASSAGGIPFRFT-NDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVT  194 (343)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~-~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~  194 (343)
                      .++|+................ ..-.+.  ++.+++......            ....+.|..+|..+|+..
T Consensus       134 a~tG~~~w~~~~~~~~~~~~~~~~p~v~--~~~vivg~~~~~------------~~~~G~v~a~D~~TG~~~  191 (560)
T d1kv9a2         134 AKTGKAIWSQQTTDPAKPYSITGAPRVV--KGKVIIGNGGAE------------YGVRGFVSAYDADTGKLA  191 (560)
T ss_dssp             TTTCCEEEEEECSCTTSSCBCCSCCEEE--TTEEEECCBCTT------------TCCBCEEEEEETTTCCEE
T ss_pred             CCCCcEEeccCccCcccceeeeeeeeee--cCccccccccee------------ccccceEEEEECCCceEE
Confidence            999986653322111111111 112222  367777654321            122466888888877754

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.65  E-value=0.76  Score=36.18  Aligned_cols=136  Identities=13%  Similarity=0.079  Sum_probs=69.0

Q ss_pred             EEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCCC---eEEEEeCCCCeEEEcc
Q 019290           57 RILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYF---GLMVVGPNGGQAQQLA  133 (343)
Q Consensus        57 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~~---gi~~~d~~~~~~~~~~  133 (343)
                      .|+..|.+++....+....                    .......++|++..|.+.....   .++.++.+++..+.+.
T Consensus        20 ~l~i~d~dG~~~~~l~~~~--------------------~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~   79 (269)
T d2hqsa1          20 ELRVSDYDGYNQFVVHRSP--------------------QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA   79 (269)
T ss_dssp             EEEEEETTSCSCEEEEEES--------------------SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEE
T ss_pred             EEEEEcCCCCCcEEEecCC--------------------CceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEe
Confidence            5777777766555553211                    1123457888666776654433   3888888887766553


Q ss_pred             cccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEeecCCCCcceeEEecCCC
Q 019290          134 SSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNS  213 (343)
Q Consensus       134 ~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~i~~~~d~~  213 (343)
                      ...     .........+ +|..++....              ......+..+........................+++
T Consensus        80 ~~~-----~~~~~~~~sp-dg~~i~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (269)
T d2hqsa1          80 SFP-----RHNGAPAFSP-DGSKLAFALS--------------KTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQ  139 (269)
T ss_dssp             CCS-----SCEEEEEECT-TSSEEEEEEC--------------TTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSS
T ss_pred             eee-----cccccceecC-CCCeeeEeee--------------cCCccceeecccccccceeeeeccccccccccccccc
Confidence            322     2234556777 4654432211              0112223334333333333222222233334556666


Q ss_pred             EEEEEEcCC--CeEEEEEccC
Q 019290          214 FLLLAESAT--LKILRFWLQG  232 (343)
Q Consensus       214 ~lyv~~~~~--~~i~~~~~~~  232 (343)
                      .++++....  ..|+.+++++
T Consensus       140 ~~~~~~~~~g~~~i~~~~~~~  160 (269)
T d2hqsa1         140 NLAFTSDQAGRPQVYKVNING  160 (269)
T ss_dssp             EEEEEECTTSSCEEEEEETTS
T ss_pred             cceecccccCCceEeeeeccc
Confidence            666655433  4677777665

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.60  E-value=1.5  Score=39.43  Aligned_cols=124  Identities=8%  Similarity=-0.005  Sum_probs=64.9

Q ss_pred             CCCeeEEEec-CCEEEEEEc-CCCCeE-EeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCCCeEEE
Q 019290           45 NGEGPYVGVS-DGRILKWKA-ANSGWT-EFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFGLMV  121 (343)
Q Consensus        45 ~g~~l~~~~~-~g~i~~~d~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~~gi~~  121 (343)
                      +|. +|+.+. .+.|+.+|. ++++.. ++........         ...........++++.  +++||+++....++.
T Consensus        62 ~g~-vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~---------~~~~~~~~~~rg~a~~--~~~i~~~~~~g~l~a  129 (571)
T d2ad6a1          62 GDM-MYVHSAFPNNTYALNLNDPGKIVWQHKPKQDAST---------KAVMCCDVVDRGLAYG--AGQIVKKQANGHLLA  129 (571)
T ss_dssp             TTE-EEEECSTTTCEEEEETTCTTSEEEEECCCCCGGG---------GGGCTTCSCCCCCEEE--TTEEEEECTTSEEEE
T ss_pred             CCE-EEEecCCCCeEEEEeCCCCCceEEEecCCCCccc---------ccccccCcCCCcceee--CCeEEEEeCCCcEEe
Confidence            455 776654 678999997 455422 2321100000         0000001122467777  578999965556999


Q ss_pred             EeCCCCeEEEcccccCCCCccCcc-eeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceE
Q 019290          122 VGPNGGQAQQLASSAGGIPFRFTN-DLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVT  194 (343)
Q Consensus       122 ~d~~~~~~~~~~~~~~~~~~~~~~-~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~  194 (343)
                      +|.++|+...-...........+. .-.+-  ++.++++.....+            ...+.|+.+|..+|+..
T Consensus       130 lda~tG~~~w~~~~~~~~~~~~~t~~p~v~--~~~vivg~~~~~~------------~~~G~v~a~D~~TG~~~  189 (571)
T d2ad6a1         130 LDAKTGKINWEVEVCDPKVGSTLTQAPFVA--KDTVLMGCSGAEL------------GVRGAVNAFDLKTGELK  189 (571)
T ss_dssp             EETTTCCEEEEEECCCGGGTCBCCSCCEEE--TTEEEEECBCGGG------------TCCCEEEEEETTTCCEE
T ss_pred             eehhhhhhhccccccccccccceeecCeEe--CCeEEEeeccccc------------cccCcEEEEECCCCcEE
Confidence            999999875432221111111111 11233  3788887654221            12466888888777754

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=94.29  E-value=1.7  Score=38.86  Aligned_cols=39  Identities=8%  Similarity=0.093  Sum_probs=24.8

Q ss_pred             CCeEEEECC-CCCEEEEeeCCCCCccCCceeEEEeCCEEEEe
Q 019290          291 DPVGVKFDV-NGNVVDVLDGNEGNTLNSVSEVQEYGEYLYTG  331 (343)
Q Consensus       291 ~~~v~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~  331 (343)
                      .+.+++||. +|+++=.+..+.+.....++..  .+|+-||.
T Consensus       478 dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~--~dGkqyv~  517 (560)
T d1kv9a2         478 AGQMHAYSADKGEALWQFEAQSGIVAAPMTFE--LAGRQYVA  517 (560)
T ss_dssp             TSEEEEEETTTCCEEEEEECSSCCCSCCEEEE--ETTEEEEE
T ss_pred             CCcEEEEECCCCcEeEEEECCCCccccCEEEE--ECCEEEEE
Confidence            357889997 6999888887765333333332  36666653

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=94.18  E-value=0.98  Score=35.55  Aligned_cols=83  Identities=13%  Similarity=-0.005  Sum_probs=46.3

Q ss_pred             CceEEEcCCCCeeE-EEecC-----CEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeE
Q 019290           37 PESLAFDCNGEGPY-VGVSD-----GRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDL  110 (343)
Q Consensus        37 p~~l~~d~~g~~l~-~~~~~-----g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l  110 (343)
                      ....+++|||+.+. +...+     ..|+.++..+++...+.......             ...........+.++++.|
T Consensus        43 ~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~-------------~~~~~~~~~~~~spdg~~l  109 (281)
T d1k32a2          43 INNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKS-------------TGRRMFTDVAGFDPDGNLI  109 (281)
T ss_dssp             EEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEE-------------ETTEECSEEEEECTTCCEE
T ss_pred             ccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCc-------------cCccccccccccCCCCCEE
Confidence            45788999999554 43222     35899998888766653211000             0011123456677755567


Q ss_pred             EEEeCC------CeEEEEeCCCCeEEEc
Q 019290          111 YIADAY------FGLMVVGPNGGQAQQL  132 (343)
Q Consensus       111 ~v~~~~------~gi~~~d~~~~~~~~~  132 (343)
                      ++....      ..+..++.+++..+..
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (281)
T d1k32a2         110 ISTDAMQPFSSMTCLYRVENDGINFVPL  137 (281)
T ss_dssp             EEECTTSSSTTCCEEEEEEGGGTEEEEC
T ss_pred             EEEEccCCCccceeeeeecCCCceeEEe
Confidence            766332      1256667776665543

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.03  E-value=1  Score=35.11  Aligned_cols=71  Identities=14%  Similarity=0.193  Sum_probs=45.5

Q ss_pred             EEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCCCeEE
Q 019290           41 AFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFGLM  120 (343)
Q Consensus        41 ~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~~gi~  120 (343)
                      |++.+|+.+.++..++.|..||.++++......                   .....+..+.++  ++.|+.+.....+.
T Consensus        20 c~~~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~-------------------~H~~~V~~v~~~--~~~l~s~s~D~~i~   78 (293)
T d1p22a2          20 CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILT-------------------GHTGSVLCLQYD--ERVIITGSSDSTVR   78 (293)
T ss_dssp             EEECCSSEEEEEESSSCEEEEESSSCCEEEEEC-------------------CCSSCEEEEECC--SSEEEEEETTSCEE
T ss_pred             EEEEcCCEEEEEeCCCeEEEEECCCCcEEEEEe-------------------cCCCCEeeeecc--cceeeccccccccc
Confidence            466789988899999999999998766543321                   112234555554  45566664334488


Q ss_pred             EEeCCCCeEEEc
Q 019290          121 VVGPNGGQAQQL  132 (343)
Q Consensus       121 ~~d~~~~~~~~~  132 (343)
                      .++..++.....
T Consensus        79 ~~~~~~~~~~~~   90 (293)
T d1p22a2          79 VWDVNTGEMLNT   90 (293)
T ss_dssp             EEESSSCCEEEE
T ss_pred             cccccccccccc
Confidence            888877665443

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=93.95  E-value=0.7  Score=38.73  Aligned_cols=140  Identities=13%  Similarity=0.026  Sum_probs=81.4

Q ss_pred             ccccccccCCCCCCCce-EEEcCCCCeeEEEecC-----C------EEEEEEcCCCCeEEeeecCCCccccccCCCCCcc
Q 019290           23 SKSYQQLQLPGVVGPES-LAFDCNGEGPYVGVSD-----G------RILKWKAANSGWTEFATTAPHRAREICDGSTNTT   90 (343)
Q Consensus        23 ~~~~~~~~~~~~~~p~~-l~~d~~g~~l~~~~~~-----g------~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (343)
                      -.|.+..++|.  .+.. .+.-.+|++++++-..     +      .+..||+.++.|........              
T Consensus         9 g~W~~~~~~p~--~~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~--------------   72 (387)
T d1k3ia3           9 GRWGPTIDLPI--VPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVT--------------   72 (387)
T ss_dssp             CEEEEEEECSS--CCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEEC--------------
T ss_pred             CccCCcCCCCc--cccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCC--------------
Confidence            34666667774  2333 4445578855555321     1      36789999887764422110              


Q ss_pred             cCCCcCCeeeEEEeCCCCeEEEEeCC--CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccc
Q 019290           91 LEPLCGRPLGIKFNPVTCDLYIADAY--FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRR  168 (343)
Q Consensus        91 ~~~~~~~p~gi~~~~~~~~l~v~~~~--~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~  168 (343)
                        .......+.++.. ++.+|++...  +.+.+||+++..++........   ..-+..++.. ||++|+.-....    
T Consensus        73 --~~~~~~~~~~~~~-~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~---r~~~~~~~~~-dG~v~v~GG~~~----  141 (387)
T d1k3ia3          73 --KHDMFCPGISMDG-NGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVA---RGYQSSATMS-DGRVFTIGGSWS----  141 (387)
T ss_dssp             --SCCCSSCEEEECT-TSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSC---CSSCEEEECT-TSCEEEECCCCC----
T ss_pred             --CcccceeEEEEec-CCcEEEeecCCCcceeEecCccCccccccccccc---ccccceeeec-CCceeeeccccc----
Confidence              0011123566776 7888887422  3489999999988876544332   2345677777 589888543210    


Q ss_pred             cceeeeeecCCCceEEEEeCCCCceEEe
Q 019290          169 QYFMSIATGDRSGRLLKYDPLKKNVTVM  196 (343)
Q Consensus       169 ~~~~~~~~~~~~~~v~~~d~~~~~~~~~  196 (343)
                             .......+++||+.+.+.+.+
T Consensus       142 -------~~~~~~~v~~yd~~~~~W~~~  162 (387)
T d1k3ia3         142 -------GGVFEKNGEVYSPSSKTWTSL  162 (387)
T ss_dssp             -------SSSCCCCEEEEETTTTEEEEE
T ss_pred             -------cccccceeeeecCCCCceeec
Confidence                   011124588999988877654

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.53  E-value=0.71  Score=40.48  Aligned_cols=76  Identities=13%  Similarity=0.072  Sum_probs=44.4

Q ss_pred             EEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCC----
Q 019290           41 AFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAY----  116 (343)
Q Consensus        41 ~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~----  116 (343)
                      .+.+++..+| ...+|.|+.+|..+++...+......                ....+....++++.+.++++...    
T Consensus        23 ~W~~~~~~~~-~~~~g~i~~~~~~~~~~~~l~~~~~~----------------~~~~~~~~~~SpD~~~vl~~~~~~~~~   85 (465)
T d1xfda1          23 KWISDTEFIY-REQKGTVRLWNVETNTSTVLIEGKKI----------------ESLRAIRYEISPDREYALFSYNVEPIY   85 (465)
T ss_dssp             CBSSSSCBCC-CCSSSCEEEBCGGGCCCEEEECTTTT----------------TTTTCSEEEECTTSSEEEEEESCCCCS
T ss_pred             EEeCCCcEEE-EeCCCcEEEEECCCCCEEEEEcCccc----------------cccccceeEECCCCCeEEEEEccccee
Confidence            4556666443 44567799999877665544321110                11123456677755566665321    


Q ss_pred             -----CeEEEEeCCCCeEEEcc
Q 019290          117 -----FGLMVVGPNGGQAQQLA  133 (343)
Q Consensus       117 -----~gi~~~d~~~~~~~~~~  133 (343)
                           ..++.+|..++..+.+.
T Consensus        86 r~s~~~~~~i~d~~~~~~~~l~  107 (465)
T d1xfda1          86 QHSYTGYYVLSKIPHGDPQSLD  107 (465)
T ss_dssp             SSCCCSEEEEEESSSCCCEECC
T ss_pred             EeeccccEEEEEccCCceeecc
Confidence                 23778899988877763

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=92.75  E-value=2.2  Score=35.36  Aligned_cols=77  Identities=10%  Similarity=0.101  Sum_probs=51.2

Q ss_pred             ceEEEcCCCCeeEEEe-cCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCC
Q 019290           38 ESLAFDCNGEGPYVGV-SDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAY  116 (343)
Q Consensus        38 ~~l~~d~~g~~l~~~~-~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~  116 (343)
                      .+.++..+|.+++++. ....+..||+.+..+......                  .....-++.++.. ++.+|+....
T Consensus        79 ~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~------------------~~~r~~~~~~~~~-dG~v~v~GG~  139 (387)
T d1k3ia3          79 PGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDM------------------QVARGYQSSATMS-DGRVFTIGGS  139 (387)
T ss_dssp             CEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCC------------------SSCCSSCEEEECT-TSCEEEECCC
T ss_pred             eEEEEecCCcEEEeecCCCcceeEecCccCcccccccc------------------cccccccceeeec-CCceeeeccc
Confidence            4678889999665653 335789999999888765321                  1111235666666 6777776321


Q ss_pred             -------CeEEEEeCCCCeEEEcc
Q 019290          117 -------FGLMVVGPNGGQAQQLA  133 (343)
Q Consensus       117 -------~gi~~~d~~~~~~~~~~  133 (343)
                             +.+.++|+.+.+++.+.
T Consensus       140 ~~~~~~~~~v~~yd~~~~~W~~~~  163 (387)
T d1k3ia3         140 WSGGVFEKNGEVYSPSSKTWTSLP  163 (387)
T ss_dssp             CCSSSCCCCEEEEETTTTEEEEET
T ss_pred             cccccccceeeeecCCCCceeecC
Confidence                   23889999999888764

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=91.98  E-value=0.75  Score=41.51  Aligned_cols=124  Identities=11%  Similarity=0.032  Sum_probs=66.4

Q ss_pred             CCCeeEEEecCCEEEEEEcCCCCeE-EeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCCCeEEEEe
Q 019290           45 NGEGPYVGVSDGRILKWKAANSGWT-EFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFGLMVVG  123 (343)
Q Consensus        45 ~g~~l~~~~~~g~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~~gi~~~d  123 (343)
                      +|. +|+.+.++.|+.+|.++++.. ++.......  ...       .........++.+.  ++.+|+++....++.+|
T Consensus        77 ~g~-vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~--~~~-------~~~~~~~~~g~~~~--~~~v~~~t~~g~l~ald  144 (573)
T d1kb0a2          77 DGI-MYVSASWSVVHAIDTRTGNRIWTYDPQIDRS--TGF-------KGCCDVVNRGVALW--KGKVYVGAWDGRLIALD  144 (573)
T ss_dssp             TTE-EEEECGGGCEEEEETTTTEEEEEECCCCCGG--GGG-------GSSSCSCCCCCEEE--TTEEEEECTTSEEEEEE
T ss_pred             CCE-EEEECCCCeEEEEeCCCCCeEEEeCCCCCcc--ccc-------ccccccccccceEE--CCcEEEEecccceeeec
Confidence            455 888888899999999987533 221100000  000       00011122456676  57899996556699999


Q ss_pred             CCCCeEEEcccccCCCC-ccCcce-eEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceE
Q 019290          124 PNGGQAQQLASSAGGIP-FRFTND-LDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVT  194 (343)
Q Consensus       124 ~~~~~~~~~~~~~~~~~-~~~~~~-i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~  194 (343)
                      .++|+...-........ ...... -.+.  ++.++++.....            ....+.|+.+|..+|+..
T Consensus       145 a~tG~~~W~~~~~~~~~~~~~~~~~p~v~--~~~vivg~~~~~------------~~~~G~v~a~D~~TG~~~  203 (573)
T d1kb0a2         145 AATGKEVWHQNTFEGQKGSLTITGAPRVF--KGKVIIGNGGAE------------YGVRGYITAYDAETGERK  203 (573)
T ss_dssp             TTTCCEEEEEETTTTCCSSCBCCSCCEEE--TTEEEECCBCTT------------TCCBCEEEEEETTTCCEE
T ss_pred             cccccceecccCccCCcceEEeecceEEE--eccEEEeecccc------------ccccceEEEEecCCccce
Confidence            99998754322211111 011111 1222  378888654321            112456777777777653

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=91.94  E-value=2.1  Score=33.11  Aligned_cols=39  Identities=15%  Similarity=0.072  Sum_probs=29.0

Q ss_pred             CCeeeEEEeCCCCeEEEEeCCCeEEEEeCCCCeEEEcccc
Q 019290           96 GRPLGIKFNPVTCDLYIADAYFGLMVVGPNGGQAQQLASS  135 (343)
Q Consensus        96 ~~p~gi~~~~~~~~l~v~~~~~gi~~~d~~~~~~~~~~~~  135 (343)
                      -+..+++.+. ++-++++.++++...|-.++|+.+.+...
T Consensus       104 vRI~S~~ydd-k~vvF~Gased~~~LYviegGklrkL~~v  142 (313)
T d2hu7a1         104 MRILSGVDTG-EAVVFTGATEDRVALYALDGGGLRELARL  142 (313)
T ss_dssp             BEEEEEEECS-SCEEEEEECSSCEEEEEEETTEEEEEEEE
T ss_pred             EEEEEeeecC-ceEEEecccCCceEEEEEeCCceeeeccC
Confidence            3556777776 77888888888877777778888887543

>d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase
family: Oligoxyloglucan reducing end-specific cellobiohydrolase
domain: Oligoxyloglucan reducing end-specific cellobiohydrolase
species: Yeast (Geotrichum sp. M128) [TaxId: 203496]

Probab=90.75  E-value=4.2  Score=34.40  Aligned_cols=123  Identities=16%  Similarity=0.126  Sum_probs=68.8

Q ss_pred             CcCCeeeEEEeCCC-CeEEEEeCCCeEEEEeCCCCeEEEcccccC--CCCccCcceeEEeCCC-CeEEEEeCCccccccc
Q 019290           94 LCGRPLGIKFNPVT-CDLYIADAYFGLMVVGPNGGQAQQLASSAG--GIPFRFTNDLDIDPNT-GIVYFTDSSIYFQRRQ  169 (343)
Q Consensus        94 ~~~~p~gi~~~~~~-~~l~v~~~~~gi~~~d~~~~~~~~~~~~~~--~~~~~~~~~i~~d~~d-g~l~v~~~~~~~~~~~  169 (343)
                      ..++..+|+++|.+ +.+|++....||++-+-.+..++.+.....  ......+.+|++||.+ +.+|++.....     
T Consensus        10 ~gg~~~~i~~~P~~~~~~ya~~~~gGv~~S~dgG~tW~~~~~~~~~~~~~~~~~~~iavdp~np~~vy~~tg~~~-----   84 (427)
T d2ebsa1          10 GGGYITGIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYV-----   84 (427)
T ss_dssp             BCSCEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCT-----
T ss_pred             CCCcEEEEEECCCCCCEEEEEecCCCEEEEECCCCceEECCCCCCCCCcccccEeEEEECCCCCCEEEEEecccc-----
Confidence            44567899998843 467887544679887655556776643221  1223456789999843 56888653210     


Q ss_pred             ceeeeeecCCCceEEEEeCCCCceEEeecCC---------CCcceeEEecC-CCEEEEEEcCCCeEEEEE
Q 019290          170 YFMSIATGDRSGRLLKYDPLKKNVTVMYNGL---------SFPNGVALSNN-NSFLLLAESATLKILRFW  229 (343)
Q Consensus       170 ~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~---------~~~~~i~~~~d-~~~lyv~~~~~~~i~~~~  229 (343)
                             +...++|++=.-.+...+.+....         .....++++|. ...+|++. ..+.|++-.
T Consensus        85 -------~~~~~gi~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~i~v~P~~~~~v~~~~-~~~gl~~S~  146 (427)
T d2ebsa1          85 -------GDEWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGT-RTEGIWKSS  146 (427)
T ss_dssp             -------TSSCCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEECTTCTTCEEEEC-SSSCEEEES
T ss_pred             -------CCcCccEEEeCCCCccceeecCCcccCccccCccceeEEEECCCccCcccccc-cccceeeec
Confidence                   111345665432323333332211         12345888875 45677664 456787633

>d1tl2a_ b.67.1.1 (A:) Tachylectin-2 {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]}

class: All beta proteins
fold: 5-bladed beta-propeller
superfamily: Tachylectin-2
family: Tachylectin-2
domain: Tachylectin-2
species: Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]

Probab=89.98  E-value=3  Score=31.50  Aligned_cols=145  Identities=14%  Similarity=0.045  Sum_probs=81.5

Q ss_pred             CeeeEEEeCCCCeEEEEeCCCeEEEEeCCCCeEEEcccc---cCCCCccCcceeEEeCCCCeEEEEeCCcccccccceee
Q 019290           97 RPLGIKFNPVTCDLYIADAYFGLMVVGPNGGQAQQLASS---AGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMS  173 (343)
Q Consensus        97 ~p~gi~~~~~~~~l~v~~~~~gi~~~d~~~~~~~~~~~~---~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~  173 (343)
                      +..-|++++ +++||... ...+|+=...+..-+.+...   ...-.=+...-+.+||+ |-||..+.            
T Consensus        41 n~~~i~fsP-~G~LyaVr-~~~lY~Gp~~s~~nq~wf~~atrIG~ggWn~FkflffdP~-G~LyaVt~------------  105 (235)
T d1tl2a_          41 NFKFLFLSP-GGELYGVL-NDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPN-GYLYAVSK------------  105 (235)
T ss_dssp             TCSEEEECT-TSCEEEEE-TTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTT-SCEEEEET------------
T ss_pred             ceeEEEECC-CCcEEEEE-CCeEEECCCCCcchHHHHHhhhhcccCcccceEEEEECCC-ceEEEecC------------
Confidence            345689998 89999884 45677655543322222111   00111133456789995 99998663            


Q ss_pred             eeecCCCceEEEEeCCCCceE-------Eeec-CCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccc---cccceee
Q 019290          174 IATGDRSGRLLKYDPLKKNVT-------VMYN-GLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERT---TYTPQLF  242 (343)
Q Consensus       174 ~~~~~~~~~v~~~d~~~~~~~-------~~~~-~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~---~~~~~~~  242 (343)
                             +.||+-.+.+.+..       .+-+ +-+....+-|+|+|. ||....  ++|++..+..+..   +..-..+
T Consensus       106 -------~~LYr~~pPtn~~q~W~g~a~~vG~~gw~df~~lFFdP~G~-LYaV~~--~~l~k~~pP~~~~d~WL~~st~i  175 (235)
T d1tl2a_         106 -------DKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGY-LYAVHG--QQFYKALPPVSNQDNWLARATKI  175 (235)
T ss_dssp             -------TEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSC-EEEEET--TEEEEECCCSSTTCCHHHHCEEE
T ss_pred             -------cceecCCcCcccchhhhhhhhhhccCCcCceeEEEECCCce-EEEEEC--CcEEEcCCCCCCCchhhhhhhhh
Confidence                   46888876554321       1111 112345677889874 888853  4687766432211   0111222


Q ss_pred             ec-CCCCCCceeeCCCCCEEEEecc
Q 019290          243 AE-MPRFPDNIKSDSKGEFWIAMNS  266 (343)
Q Consensus       243 ~~-~~~~p~~i~~d~~G~lwi~~~~  266 (343)
                      .. .-..+..+.+.++|+||-....
T Consensus       176 gr~~w~~~~fi~Fs~dG~L~~v~~g  200 (235)
T d1tl2a_         176 GQGGWDTFKFLFFSSVGTLFGVQGG  200 (235)
T ss_dssp             ESSSGGGEEEEEECTTSCEEEEETT
T ss_pred             ccCcccCceEEEECCCCcEEEEeCC
Confidence            21 1122456788999999988644

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.84  E-value=5.5  Score=34.37  Aligned_cols=144  Identities=8%  Similarity=0.034  Sum_probs=75.2

Q ss_pred             EEEeCCCCeEEEEeCC-----CeEEEEeCCCCeEEEcccccCCCCcc-CcceeEEeCCCCe-E---EEEeCCcccccccc
Q 019290          101 IKFNPVTCDLYIADAY-----FGLMVVGPNGGQAQQLASSAGGIPFR-FTNDLDIDPNTGI-V---YFTDSSIYFQRRQY  170 (343)
Q Consensus       101 i~~~~~~~~l~v~~~~-----~gi~~~d~~~~~~~~~~~~~~~~~~~-~~~~i~~d~~dg~-l---~v~~~~~~~~~~~~  170 (343)
                      +...+ ++.+++....     ..+..+|..+|+.+.+.......=.. ......+.+ ||. +   |.++.+        
T Consensus       260 ~~W~~-d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~-dg~~~~fi~~se~~--------  329 (465)
T d1xfda1         260 VKWAT-STKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSK-DGRKFFFIRAIPQG--------  329 (465)
T ss_dssp             EEESS-SSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECT-TSCSEEEEEEECCS--------
T ss_pred             eEEcC-CCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEcc-CCCeeEEEEeeeec--------
Confidence            44555 6677665321     13888999999877664322111001 112345666 354 2   223222        


Q ss_pred             eeeeeecCCCceEEEEeC-------CCCceEEeecCCCCcc-eeEEecCCCEEEEEEcC----CCeEEEEEccCcccccc
Q 019290          171 FMSIATGDRSGRLLKYDP-------LKKNVTVMYNGLSFPN-GVALSNNNSFLLLAESA----TLKILRFWLQGERTTYT  238 (343)
Q Consensus       171 ~~~~~~~~~~~~v~~~d~-------~~~~~~~~~~~~~~~~-~i~~~~d~~~lyv~~~~----~~~i~~~~~~~~~~~~~  238 (343)
                              +.+.++.+..       .++..+.+..+.-... -++++.+++.+|++...    ...||++++++...   
T Consensus       330 --------g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~---  398 (465)
T d1xfda1         330 --------GRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFN---  398 (465)
T ss_dssp             --------SSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCC---
T ss_pred             --------ccCceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCc---
Confidence                    2345666532       2222233332222223 34688889999997653    33589988876322   


Q ss_pred             ceeee----cCCCCCCceeeCCCCCEEEEecc
Q 019290          239 PQLFA----EMPRFPDNIKSDSKGEFWIAMNS  266 (343)
Q Consensus       239 ~~~~~----~~~~~p~~i~~d~~G~lwi~~~~  266 (343)
                      .+.+.    +.++ -....++++|+.++-+..
T Consensus       399 ~~~lt~~~~~~~~-~~~~~~S~~~~y~v~~~s  429 (465)
T d1xfda1         399 RQCLSCDLVENCT-YFSASFSHSMDFFLLKCE  429 (465)
T ss_dssp             CBCSSTTSSSSCC-CCEEEECTTSSEEEEECC
T ss_pred             ceeeccccCCCCC-EEEEEECCCCCEEEEEee
Confidence            12221    1111 235678999998886654

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=89.75  E-value=6.4  Score=35.00  Aligned_cols=38  Identities=13%  Similarity=0.077  Sum_probs=25.2

Q ss_pred             CCeEEEECC-CCCEEEEeeCCCCCccCCceeEEEeCCEEEE
Q 019290          291 DPVGVKFDV-NGNVVDVLDGNEGNTLNSVSEVQEYGEYLYT  330 (343)
Q Consensus       291 ~~~v~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i  330 (343)
                      .+.+++||. +|+++=.+..+.+.....++...  +|+.||
T Consensus       497 dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~--~GkQYv  535 (573)
T d1kb0a2         497 DGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMV--DGRQYV  535 (573)
T ss_dssp             TSEEEEEETTTCCEEEEEECSSCCCSCCEEEEE--TTEEEE
T ss_pred             CCeEEEEECCCCcEeEEEECCCCccccCEEEEE--CCEEEE
Confidence            467899997 69999888877664333333333  676664

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=88.38  E-value=8.3  Score=34.48  Aligned_cols=82  Identities=12%  Similarity=0.035  Sum_probs=46.9

Q ss_pred             eeEEEeCCC----CeEEEEeCCCeEEEEeCCCCeEEEcccccCCCCc-cCcceeEEeCCCCeEEEEeCCcccccccceee
Q 019290           99 LGIKFNPVT----CDLYIADAYFGLMVVGPNGGQAQQLASSAGGIPF-RFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMS  173 (343)
Q Consensus        99 ~gi~~~~~~----~~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~-~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~  173 (343)
                      .|+++.+.+    .++|+++....|+.+|.+||+...-......... .....-.+.  ++.++++.....+        
T Consensus       109 RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~--~~~vivg~~~~e~--------  178 (596)
T d1w6sa_         109 RGLAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV--KDKVIIGSSGAEL--------  178 (596)
T ss_dssp             CCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE--TTEEEECCBCGGG--------
T ss_pred             ceeEEecCCCCCceEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcEE--CCeEEEeeccccc--------
Confidence            466665422    2588886555699999999987654322111111 111122333  3789887655321        


Q ss_pred             eeecCCCceEEEEeCCCCceE
Q 019290          174 IATGDRSGRLLKYDPLKKNVT  194 (343)
Q Consensus       174 ~~~~~~~~~v~~~d~~~~~~~  194 (343)
                          ...+.|..+|..+|+..
T Consensus       179 ----~~~G~v~A~Da~TG~~~  195 (596)
T d1w6sa_         179 ----GVRGYLTAYDVKTGEQV  195 (596)
T ss_dssp             ----TCCCEEEEEETTTCCEE
T ss_pred             ----cccCceEEEECCCCcEE
Confidence                22467888888877754

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=81.93  E-value=17  Score=32.33  Aligned_cols=79  Identities=11%  Similarity=-0.006  Sum_probs=45.0

Q ss_pred             ceEEEcCC----CCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEE
Q 019290           38 ESLAFDCN----GEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIA  113 (343)
Q Consensus        38 ~~l~~d~~----g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~  113 (343)
                      +++++-++    +.++|+.+.+++|+.+|..|++..--.......   .         ....  ...-.+.  ++.++++
T Consensus       109 RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~---~---------~~~~--t~~P~v~--~~~vivg  172 (596)
T d1w6sa_         109 RGLAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIK---V---------GSTL--TIAPYVV--KDKVIIG  172 (596)
T ss_dssp             CCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGG---G---------TCBC--CSCCEEE--TTEEEEC
T ss_pred             ceeEEecCCCCCceEEEEEeCCCCeEeeccccCceeccccccccc---c---------cccc--ccCCcEE--CCeEEEe
Confidence            45555332    345888889999999999987654322111000   0         0000  0111233  5778887


Q ss_pred             eCC-----Ce-EEEEeCCCCeEEEc
Q 019290          114 DAY-----FG-LMVVGPNGGQAQQL  132 (343)
Q Consensus       114 ~~~-----~g-i~~~d~~~~~~~~~  132 (343)
                      ...     .| |+.+|.+||+....
T Consensus       173 ~~~~e~~~~G~v~A~Da~TG~~~W~  197 (596)
T d1w6sa_         173 SSGAELGVRGYLTAYDVKTGEQVWR  197 (596)
T ss_dssp             CBCGGGTCCCEEEEEETTTCCEEEE
T ss_pred             eccccccccCceEEEECCCCcEEEE
Confidence            432     24 88999999987653