Citrus Sinensis ID: 019305

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340---
Protein Sequence
MGEEREDSQKIKRIAAAAYDYDNDPRWADYWSNILIPPHMAARSDVVDHYKRKFYQRYIDPDLVVESMSQPTQASASSTSSATANDRPRQRNSANPGSTTSRSSGTSTNAGSNTTSVRWDRQTIQFSVNAWVFVVAMLAIFPLIPRNLSNRAYRLSFMGTACSSIYSLYSLYGKPRAWNMQALQVYFQSIIATKDFIYFIYCLSFVTSHLCLKFALIPILCRSVEHVAKFLRRNFSRSILYRKYLEDACVWVESNSTTLSILTSHAEIGLGFLLIISLLSWQRNIIQTFMYWQLLKLMYHAPVSAGYHQSVWAKIGRTVNPLVYRYAPFLNTPISAIQRWWLR
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHccccccccHHHHHHcccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcHHHHccccccccHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHHccccccccHHHHHHHccccccccccHHHHHHHHHHHHHHccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHccccEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcHHHHHHcHHHccHHHHHHHHHHc
Coil and Loop (DISEMBL)
MGEEREDSQKIKRIAAAaydydndprwadywsnilipphmaarsdvVDHYKRKFyqryidpdlvvesmsqptqasasstssatandrprqrnsanpgsttsrssgtstnagsnttsvrwdrqtiQFSVNAWVFVVAMLAIfpliprnlsnRAYRLSFMGTACSSIYSLYslygkprawnMQALQVYFQSIIATKDFIYFIYCLSFVTSHLCLKFALIPILCRSVEHVAKFLRRNFSRSILYRKYLEDACVWVESNSTTLSILTSHAEIGLGFLLIISLLSWQRNIIQTFMYWQLLKLMyhapvsagyhQSVWAkigrtvnplvyryapflntpisAIQRWWLR
Flexible Loop (DISEMBL)
MGEEREDSQKIKRIAaaaydydndpRWADYWSNILIPPHMAARSDVVDHYKRKFYQRYIDPDLVVESMSQPTQAsasstssatandrprqrnsanpgsttsrssgtstnagsnttsvrwdrQTIQFSVNAWVFVVAMLAIFPLIPRNLSNRAYRLSFMGTACSSIYSLYSLYGKPRAWNMQALQVYFQSIIATKDFIYFIYCLSFVTSHLCLKFALIPILCRSVEHVAKFLRRNFSRSILYRKYLEDACVWVESNSTTLSILTSHAEIGLGFLLIISLLSWQRNIIQTFMYWQLLKLMYHAPVSAGYHQSVWAKIGRTVNPLVYRYapflntpisaiqRWWLR
Low Complexity Region (SEG)
MGEEREDSQKIKRIAAAAYDYDNDPRWADYWSNILIPPHMAARSDVVDHYKRKFYQRYIDPDLVVESMSQPTQasasstssataNDRPRQRNSAnpgsttsrssgtstnagsnttsVRWDRQTIQFSVNAWVFVVAMLAIFPLIPRNLSNRAYRLSFMGTACSSIYSLYSLYGKPRAWNMQALQVYFQSIIATKDFIYFIYCLSFVTSHLCLKFALIPILCRSVEHVAKFLRRNFSRSILYRKYLEDACVWVESNSTTLSILTSHAEiglgflliisllsWQRNIIQTFMYWQLLKLMYHAPVSAGYHQSVWAKIGRTVNPLVYRYAPFLNTPISAIQRWWLR
Disordered region (IsUnstruct)
************RIAAAAYDYDNDPRWADYWSNILIPPHMAARSDVVDHYKRKFYQRYIDPDLVV***************************************************VRWDRQTIQFSVNAWVFVVAMLAIFPLIPRNLSNRAYRLSFMGTACSSIYSLYSLYGKPRAWNMQALQVYFQSIIATKDFIYFIYCLSFVTSHLCLKFALIPILCRSVEHVAKFLRRNFSRSILYRKYLEDACVWVESNSTTLSILTSHAEIGLGFLLIISLLSWQRNIIQTFMYWQLLKLMYHAPVSAGYHQSVWAKIGRTVNPLVYRYAPFLNTPISAIQRWWL*
Disordered Region (DISOPRED)
**************AAAAYDYDNDPRWADYWSNILIPPHMAARSDVVDHYKRKFYQRYIDP**********************************************************DRQTIQFSVNAWVFVVAMLAIFPLIPRNLSNRAYRLSFMGTACSSIYSLYSLYGKPRAWNMQALQVYFQSIIATKDFIYFIYCLSFVTSHLCLKFALIPILCRSVEHVAKFLRRNFSRSILYRKYLEDACVWVESNSTTLSILTSHAEIGLGFLLIISLLSWQRNIIQTFMYWQLLKLMYHAPVSAGYHQSVWAKIGRTVNPLVYRYAPFLNTPISAIQRWWLR
Disordered Region (DISEMBL)
**********IKRIAAAAYDYDNDPRWADYWSNILIPPHMAARSDVVDHYKRKFYQRYIDPDLVVE*************************************************SVRWDRQTIQFSVNAWVFVVAMLAIFPLIPRNLSNRAYRLSFMGTACSSIYSLYSLYGKPRAWNMQALQVYFQSIIATKDFIYFIYCLSFVTSHLCLKFALIPILCRSVEHVAKFLRRNFSRSILYRKYLEDACVWVESNSTTLSILTSHAEIGLGFLLIISLLSWQRNIIQTFMYWQLLKLMYHAPVSAGYHQSVWAKIGRTVNPLVYRYAPFLNTPISAIQRWWLR
Disordered Region (DISPRO)
*******SQKIKRIAAAAYDYDNDPRWADYWSNILIPPHMAARSDVVDHYKRKFYQRYIDPDLVVES************************************************SVRWDRQTIQFSVNAWVFVVAMLAIFPLIPRNLSNRAYRLSFMGTACSSIYSLYSLYGKPRAWNMQALQVYFQSIIATKDFIYFIYCLSFVTSHLCLKFALIPILCRSVEHVAKFLRRNFSRSILYRKYLEDACVWVESNSTTLSILTSHAEIGLGFLLIISLLSWQRNIIQTFMYWQLLKLMYHAPVSAGYHQSVWAKIGRTVNPLVYRYAPFLNTPISAIQRWWLR
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGEEREDSQKIKRIAAAAYDYDNDPRWADYWSNILIPPHMAARSDVVDHYKRKFYQRYIDPDLVVESMSQPTQASASSTSSATANDRPRQRNSANPGSTTSRSSGTSTNAGSNTTSVRWDRQTIQFSVNAWVFVVAMLAIFPLIPRNLSNRAYRLSFMGTACSSIYSLYSLYGKPRAWNMQALQVYFQSIIATKDFIYFIYCLSFVTSHLCLKFALIPILCRSVEHVAKFLRRNFSRSILYRKYLEDACVWVESNSTTLSILTSHAEIGLGFLLIISLLSWQRNIIQTFMYWQLLKLMYHAPVSAGYHQSVWAKIGRTVNPLVYRYAPFLNTPISAIQRWWLR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	343
224079894	345	predicted protein [Populus trichocarpa]	0.994	0.988	0.772	1e-159
224127372	345	predicted protein [Populus trichocarpa]	0.988	0.982	0.773	1e-158
255585937	346	conserved hypothetical protein [Ricinus	0.994	0.985	0.784	1e-156
356545687	347	PREDICTED: uncharacterized protein LOC10	0.988	0.976	0.746	1e-151
297832872	344	hypothetical protein ARALYDRAFT_896208 [	0.988	0.985	0.741	1e-149
18396183	348	uncharacterized protein [Arabidopsis tha	0.988	0.974	0.747	1e-148
358346195	348	hypothetical protein MTR_074s0017 [Medic	0.988	0.974	0.718	1e-147
217075827	348	unknown [Medicago truncatula]	0.988	0.974	0.715	1e-147
388504324	348	unknown [Medicago truncatula]	0.988	0.974	0.713	1e-146
358249008	345	uncharacterized protein LOC100789872 [Gl	0.973	0.968	0.737	1e-146

>gi|224079894|ref|XP_002305962.1| predicted protein [Populus trichocarpa] gi|222848926|gb|EEE86473.1| predicted protein [Populus trichocarpa]

 Score =  566 bits (1458), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 268/347 (77%), Positives = 305/347 (87%), Gaps = 6/347 (1%)

Query: 1   MGEEREDSQKIKRIAAAAYDYDNDPRWADYWSNILIPPHMAARSDVVDHYKRKFYQRYID 60
           MG+E EDSQK +RIAAAAYDYDNDPRWADYWSNILIPPH+++RSDV+DHYKRKFYQRYID
Sbjct: 1   MGQETEDSQKPRRIAAAAYDYDNDPRWADYWSNILIPPHLSSRSDVLDHYKRKFYQRYID 60

Query: 61  PDLVVESMSQPTQASASSTSSATANDRPRQRNSANPGS----TTSRSSGTSTNAGSNTTS 116
           PDLVVE MS  T  S+ ST+ + ++      +   P +    +T+R+SG S  AG N TS
Sbjct: 61  PDLVVEVMS--TNGSSQSTNPSASSSSSSPPSYGEPQTHNTGSTARASGPSATAGQNPTS 118

Query: 117 VRWDRQTIQFSVNAWVFVVAMLAIFPLIPRNLSNRAYRLSFMGTACSSIYSLYSLYGKPR 176
           V W RQTIQFSVNAWVFVVA+LAI PL P+NLS+RAYRLS +GTACSS+YSLY+LYG+PR
Sbjct: 119 VHWYRQTIQFSVNAWVFVVAVLAIIPLAPKNLSSRAYRLSLIGTACSSLYSLYTLYGRPR 178

Query: 177 AWNMQALQVYFQSIIATKDFIYFIYCLSFVTSHLCLKFALIPILCRSVEHVAKFLRRNFS 236
           AWN+Q +QVY QSIIATKDFIYFIYCL+FVTSHLCLK ALIPILCRS+EHVAKFLRRNFS
Sbjct: 179 AWNLQGIQVYLQSIIATKDFIYFIYCLTFVTSHLCLKVALIPILCRSLEHVAKFLRRNFS 238

Query: 237 RSILYRKYLEDACVWVESNSTTLSILTSHAEIGLGFLLIISLLSWQRNIIQTFMYWQLLK 296
           RS LYRKYLED CVWVESN+TTLSIL+SH EIGLGFLLI+SL SWQRNIIQTFMYWQLLK
Sbjct: 239 RSTLYRKYLEDPCVWVESNTTTLSILSSHTEIGLGFLLIVSLFSWQRNIIQTFMYWQLLK 298

Query: 297 LMYHAPVSAGYHQSVWAKIGRTVNPLVYRYAPFLNTPISAIQRWWLR 343
           +MYHAPV+AGYHQSVWAKIGRT+NPL++RY PFLNTP+SA+QRWWLR
Sbjct: 299 IMYHAPVTAGYHQSVWAKIGRTINPLIHRYCPFLNTPLSAVQRWWLR 345

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127372|ref|XP_002329261.1| predicted protein [Populus trichocarpa] gi|222870715|gb|EEF07846.1| predicted protein [Populus trichocarpa]

 Score =  562 bits (1449), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 270/349 (77%), Positives = 312/349 (89%), Gaps = 10/349 (2%)

Query: 1   MGEEREDSQKIKRIAAAAYDYDNDPRWADYWSNILIPPHMAARSDVVDHYKRKFYQRYID 60
           MGEERED QK+KRIAAAA+DY+NDPRWA+YWSNILIPPH+A+RSDV+DH+KRKFYQRYID
Sbjct: 1   MGEEREDPQKLKRIAAAAFDYENDPRWAEYWSNILIPPHLASRSDVIDHFKRKFYQRYID 60

Query: 61  PDLVVESMS------QPTQASASSTSSATANDRPRQRNSANPGSTTSRSSGTSTNAGSNT 114
           PDLVVE+MS          + +SS+SSA +ND+PR RN+   GSTT R+SG S  AG N 
Sbjct: 61  PDLVVEAMSTNGSSQSTKSSGSSSSSSAPSNDQPRPRNT---GSTT-RTSGPSATAGQNP 116

Query: 115 TSVRWDRQTIQFSVNAWVFVVAMLAIFPLIPRNLSNRAYRLSFMGTACSSIYSLYSLYGK 174
           + VRWDRQTIQFS+NAWVF+VA+LAI PL+P+NLS+RA RLSFMGTACSS+YSLY+L+G+
Sbjct: 117 SPVRWDRQTIQFSINAWVFIVAVLAIIPLVPKNLSSRASRLSFMGTACSSLYSLYALHGR 176

Query: 175 PRAWNMQALQVYFQSIIATKDFIYFIYCLSFVTSHLCLKFALIPILCRSVEHVAKFLRRN 234
           PRAWN+Q +Q Y QSIIATKDFIY IYCL+FVTSHLCL+FALIPILCRS+EHVAKFLR N
Sbjct: 177 PRAWNLQGIQAYLQSIIATKDFIYVIYCLTFVTSHLCLRFALIPILCRSLEHVAKFLRSN 236

Query: 235 FSRSILYRKYLEDACVWVESNSTTLSILTSHAEIGLGFLLIISLLSWQRNIIQTFMYWQL 294
           FSRS LYRKYLED CVWVESN+TTL+IL+SH+EI LGFLLIISLLSWQRNIIQTFMYWQL
Sbjct: 237 FSRSTLYRKYLEDPCVWVESNTTTLNILSSHSEIALGFLLIISLLSWQRNIIQTFMYWQL 296

Query: 295 LKLMYHAPVSAGYHQSVWAKIGRTVNPLVYRYAPFLNTPISAIQRWWLR 343
           LKLMY+APV+AGYHQSVWAKIGR VNPL++RY PFLNTP+SA+QRWW R
Sbjct: 297 LKLMYNAPVTAGYHQSVWAKIGRIVNPLIHRYCPFLNTPLSAVQRWWFR 345

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255585937|ref|XP_002533640.1| conserved hypothetical protein [Ricinus communis] gi|223526469|gb|EEF28743.1| conserved hypothetical protein [Ricinus communis]

 Score =  557 bits (1436), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 273/348 (78%), Positives = 309/348 (88%), Gaps = 7/348 (2%)

Query: 1   MGEEREDSQKIKRIAAAAYDYDNDPRWADYWSNILIPPHMAARSDVVDHYKRKFYQRYID 60
           M EERE++QKIK++AAAAYDY+NDPRWADYWSNILIPPH+A+RSDVVDH+KRKFYQRYID
Sbjct: 1   MAEEREEAQKIKKMAAAAYDYENDPRWADYWSNILIPPHLASRSDVVDHFKRKFYQRYID 60

Query: 61  PDLVVESMSQP-----TQASASSTSSATANDRPRQRNSANPGSTTSRSSGTSTNAGSNTT 115
           P+LVVE+M+       T++S+SS SS T+ND  R RN+ +    +  S+ T  NA  N T
Sbjct: 61  PELVVEAMTSTGSSQPTKSSSSSASSGTSNDHTRSRNTGSAARASGASATTGLNA--NPT 118

Query: 116 SVRWDRQTIQFSVNAWVFVVAMLAIFPLIPRNLSNRAYRLSFMGTACSSIYSLYSLYGKP 175
           SVRWDRQTIQFSVNAWVFVVA+LAI PL+PRNLSNRAYRLSFMGTACSS+YSLY+LYG+P
Sbjct: 119 SVRWDRQTIQFSVNAWVFVVAVLAIIPLVPRNLSNRAYRLSFMGTACSSLYSLYTLYGRP 178

Query: 176 RAWNMQALQVYFQSIIATKDFIYFIYCLSFVTSHLCLKFALIPILCRSVEHVAKFLRRNF 235
           RA N+Q LQ YFQSIIATKDFIYFIYCL+FVTSHLCLKFALIPILCR++E VAKFLR NF
Sbjct: 179 RALNLQGLQAYFQSIIATKDFIYFIYCLTFVTSHLCLKFALIPILCRALEQVAKFLRHNF 238

Query: 236 SRSILYRKYLEDACVWVESNSTTLSILTSHAEIGLGFLLIISLLSWQRNIIQTFMYWQLL 295
           SRS LYRKYLED CVWVESN+ TLSIL+SHAEIGLGFLLI+SL SWQRNIIQTFMYWQLL
Sbjct: 239 SRSTLYRKYLEDPCVWVESNTATLSILSSHAEIGLGFLLILSLFSWQRNIIQTFMYWQLL 298

Query: 296 KLMYHAPVSAGYHQSVWAKIGRTVNPLVYRYAPFLNTPISAIQRWWLR 343
           KLM+HAPV+AGYHQSVWAK+GR+VNPLV+RY PFLNTPI A QRWWLR
Sbjct: 299 KLMHHAPVTAGYHQSVWAKVGRSVNPLVHRYCPFLNTPIYAAQRWWLR 346

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356545687|ref|XP_003541268.1| PREDICTED: uncharacterized protein LOC100794639 [Glycine max]

 Score =  540 bits (1391), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 262/351 (74%), Positives = 300/351 (85%), Gaps = 12/351 (3%)

Query: 1   MGEEREDSQKIKRIAAAAYDYDNDPRWADYWSNILIPPHMAARSDVVDHYKRKFYQRYID 60
           MGEERED QK+KR+AA +YDYDND RW DYW+N+LIPPHMA+R DVV H+KRKFYQRY+D
Sbjct: 1   MGEEREDPQKLKRLAADSYDYDNDSRWPDYWNNVLIPPHMASRDDVVSHFKRKFYQRYVD 60

Query: 61  PDLVVESMS------QPTQASASSTSSATANDRPRQRNSANPGSTTSRSSGTSTNAGSNT 114
           PD VVE MS      QP ++S +S+SS   N++PR R+S     +T+R+SGTST AG   
Sbjct: 61  PDFVVEPMSVGGSSSQPVRSSTTSSSSPLTNNQPRARSSG----STNRTSGTSTTAGPGP 116

Query: 115 --TSVRWDRQTIQFSVNAWVFVVAMLAIFPLIPRNLSNRAYRLSFMGTACSSIYSLYSLY 172
             T +RWDRQT+ FSVNAWVFVVA LA  PL+P++LS+RAYRL F+GT CSS+YSLYS Y
Sbjct: 117 SPTPLRWDRQTVLFSVNAWVFVVAFLAAIPLVPKHLSHRAYRLCFLGTLCSSLYSLYSQY 176

Query: 173 GKPRAWNMQALQVYFQSIIATKDFIYFIYCLSFVTSHLCLKFALIPILCRSVEHVAKFLR 232
           GKPRAWN QALQVYFQSIIA+KDF+YFIYCL+FVTSHLCLKFALIPILC S EHVAKFLR
Sbjct: 177 GKPRAWNWQALQVYFQSIIASKDFLYFIYCLTFVTSHLCLKFALIPILCWSFEHVAKFLR 236

Query: 233 RNFSRSILYRKYLEDACVWVESNSTTLSILTSHAEIGLGFLLIISLLSWQRNIIQTFMYW 292
           RNFSRS LYRKYLE+ CVWVESNS+TL+I+TSHAEIGLGFLLIISL SWQRNIIQ FMYW
Sbjct: 237 RNFSRSTLYRKYLEEPCVWVESNSSTLNIVTSHAEIGLGFLLIISLFSWQRNIIQAFMYW 296

Query: 293 QLLKLMYHAPVSAGYHQSVWAKIGRTVNPLVYRYAPFLNTPISAIQRWWLR 343
           QLLKLMYH PV+A YHQSVWA+IGR+VNPL+ R+APFL TPIS IQRWWLR
Sbjct: 297 QLLKLMYHIPVTAPYHQSVWAQIGRSVNPLIQRHAPFLKTPISTIQRWWLR 347

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297832872|ref|XP_002884318.1| hypothetical protein ARALYDRAFT_896208 [Arabidopsis lyrata subsp. lyrata] gi|297330158|gb|EFH60577.1| hypothetical protein ARALYDRAFT_896208 [Arabidopsis lyrata subsp. lyrata]

 Score =  533 bits (1372), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 258/348 (74%), Positives = 303/348 (87%), Gaps = 9/348 (2%)

Query: 1   MGEEREDSQKIKRIAAAAYDYDNDPRWADYWSNILIPPHMAARSDVVDHYKRKFYQRYID 60
           M E  ED Q++K+IAAAA+DY+ND RWADYWSNILIPPHMA+R +VVDH+KRKFYQRYID
Sbjct: 1   MAEGGEDPQRLKKIAAAAFDYENDARWADYWSNILIPPHMASRPEVVDHFKRKFYQRYID 60

Query: 61  PDLVVESMSQPTQASA-----SSTSSATANDRPRQRNSANPGSTTSRSSGTSTNAGSNTT 115
           PDLVVE MS  + +S      ++++S+ AN++ R RNS     +  R+SG S   G+N +
Sbjct: 61  PDLVVEPMSTSSSSSQSARPSATSASSNANEQVRSRNSG----SVPRTSGPSATTGANPS 116

Query: 116 SVRWDRQTIQFSVNAWVFVVAMLAIFPLIPRNLSNRAYRLSFMGTACSSIYSLYSLYGKP 175
           S+RWD+QTIQFSVNAWVFV+A+LA+ PLIP+NLSNRAYRLSFMGTACSS+YSLYSLYG+P
Sbjct: 117 SMRWDQQTIQFSVNAWVFVIAVLAVLPLIPKNLSNRAYRLSFMGTACSSLYSLYSLYGRP 176

Query: 176 RAWNMQALQVYFQSIIATKDFIYFIYCLSFVTSHLCLKFALIPILCRSVEHVAKFLRRNF 235
           RAWNMQ LQ+YFQSI+A KDFIYFIYCL+FVTSHLCLKFALIPILCR++E VAKFLRRNF
Sbjct: 177 RAWNMQGLQIYFQSIVAAKDFIYFIYCLTFVTSHLCLKFALIPILCRALEQVAKFLRRNF 236

Query: 236 SRSILYRKYLEDACVWVESNSTTLSILTSHAEIGLGFLLIISLLSWQRNIIQTFMYWQLL 295
            RS +YRKYLED CVWVESN+TTL+IL+S AEI +GFLLIISLLSWQRNIIQTFMYWQLL
Sbjct: 237 GRSTIYRKYLEDPCVWVESNTTTLNILSSQAEIAIGFLLIISLLSWQRNIIQTFMYWQLL 296

Query: 296 KLMYHAPVSAGYHQSVWAKIGRTVNPLVYRYAPFLNTPISAIQRWWLR 343
           KLMY APV+AGYHQS W+KIGRTV P++ RYAPFLNTP+SA+QRWW R
Sbjct: 297 KLMYQAPVTAGYHQSTWSKIGRTVTPIIQRYAPFLNTPVSAVQRWWFR 344

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18396183|ref|NP_566171.1| uncharacterized protein [Arabidopsis thaliana] gi|14190451|gb|AAK55706.1|AF380625_1 AT3g02420/F16B3_5 [Arabidopsis thaliana] gi|6957705|gb|AAF32449.1| unknown protein [Arabidopsis thaliana] gi|15810093|gb|AAL06972.1| AT3g02420/F16B3_5 [Arabidopsis thaliana] gi|21553733|gb|AAM62826.1| unknown [Arabidopsis thaliana] gi|332640285|gb|AEE73806.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  529 bits (1363), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 263/352 (74%), Positives = 304/352 (86%), Gaps = 13/352 (3%)

Query: 1   MGEEREDSQKIKRIAAAAYDYDNDPRWADYWSNILIPPHMAARSDVVDHYKRKFYQRYID 60
           M E  EDSQ++K+IAAAA+DY+ND RWADYWSNILIPPHMA+R +VVDH+KRKFYQRYID
Sbjct: 1   MAEGGEDSQRLKKIAAAAFDYENDARWADYWSNILIPPHMASRPEVVDHFKRKFYQRYID 60

Query: 61  PDLVVESM---------SQPTQASASSTSSATANDRPRQRNSANPGSTTSRSSGTSTNAG 111
           PDLVVE M         ++PT  SASST+S+ AN++ R RNS     +  R+SG S   G
Sbjct: 61  PDLVVEPMSTSSSSSQSARPTATSASSTASSNANEQVRSRNSG----SVPRTSGPSATTG 116

Query: 112 SNTTSVRWDRQTIQFSVNAWVFVVAMLAIFPLIPRNLSNRAYRLSFMGTACSSIYSLYSL 171
           +  +S+RWD QTIQFSVNAWVFV+A+LA+ PLIP+NLSNRAYRLSFMGTACSS+YSLYSL
Sbjct: 117 ATPSSMRWDEQTIQFSVNAWVFVIAVLAVLPLIPKNLSNRAYRLSFMGTACSSLYSLYSL 176

Query: 172 YGKPRAWNMQALQVYFQSIIATKDFIYFIYCLSFVTSHLCLKFALIPILCRSVEHVAKFL 231
           YG+PRAWNMQ LQVYFQSI+A KDFIYFIYCL+FVTSHLCLKFALIPILCR++E VAKFL
Sbjct: 177 YGRPRAWNMQGLQVYFQSIVAAKDFIYFIYCLTFVTSHLCLKFALIPILCRALEQVAKFL 236

Query: 232 RRNFSRSILYRKYLEDACVWVESNSTTLSILTSHAEIGLGFLLIISLLSWQRNIIQTFMY 291
           RRNF RS +YRKYLED CVWVESN+TTL+IL+S AEI +GFLLIISLLSWQRNIIQTFMY
Sbjct: 237 RRNFGRSTIYRKYLEDPCVWVESNTTTLNILSSQAEIAIGFLLIISLLSWQRNIIQTFMY 296

Query: 292 WQLLKLMYHAPVSAGYHQSVWAKIGRTVNPLVYRYAPFLNTPISAIQRWWLR 343
           WQLLKLMY APV+AGYHQS W++IGRTV P++ RYAPFLNTP+SA+QRWW R
Sbjct: 297 WQLLKLMYQAPVTAGYHQSTWSRIGRTVTPIIQRYAPFLNTPVSAVQRWWFR 348

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358346195|ref|XP_003637156.1| hypothetical protein MTR_074s0017 [Medicago truncatula] gi|355503091|gb|AES84294.1| hypothetical protein MTR_074s0017 [Medicago truncatula]

 Score =  528 bits (1360), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 253/352 (71%), Positives = 297/352 (84%), Gaps = 13/352 (3%)

Query: 1   MGEEREDSQKIKRIAAAAYDYDNDPRWADYWSNILIPPHMAARSDVVDHYKRKFYQRYID 60
           MG E+ED QK+KR+AA +YDYD+D RW DYW+N+LIPPHM++R DVV H+KRKFYQRY+D
Sbjct: 1   MGSEKEDPQKLKRLAADSYDYDSDSRWPDYWNNVLIPPHMSSRQDVVSHFKRKFYQRYLD 60

Query: 61  PDLVVESMSQPTQASASSTSSATA--------NDRPRQRNSANPGSTTSRSSGTS-TNAG 111
            DLVVE MS  + +      + ++        ND+ R R++     +T+R+SGTS T+ G
Sbjct: 61  NDLVVEPMSLSSSSQPPRPPATSSSSSPPPRSNDQARARSTG----STNRTSGTSATSVG 116

Query: 112 SNTTSVRWDRQTIQFSVNAWVFVVAMLAIFPLIPRNLSNRAYRLSFMGTACSSIYSLYSL 171
            N   +RWDRQTI FSVNAWV VVA LA  P+IP++LS+RAYRLSFMGT CSS+YSLYS 
Sbjct: 117 PNPAPLRWDRQTILFSVNAWVLVVAFLAAVPIIPKHLSHRAYRLSFMGTTCSSLYSLYSQ 176

Query: 172 YGKPRAWNMQALQVYFQSIIATKDFIYFIYCLSFVTSHLCLKFALIPILCRSVEHVAKFL 231
           YGKPRAWNMQALQVYFQSIIATKDFIYF+YCL+FVTSHLCLKFALIPILC S EHVAKFL
Sbjct: 177 YGKPRAWNMQALQVYFQSIIATKDFIYFVYCLTFVTSHLCLKFALIPILCWSFEHVAKFL 236

Query: 232 RRNFSRSILYRKYLEDACVWVESNSTTLSILTSHAEIGLGFLLIISLLSWQRNIIQTFMY 291
           RRNFSRS LYRKYLE+ CVWVESN+TTL+ILTSHAEIGLGFLL++SL SWQRNIIQTFMY
Sbjct: 237 RRNFSRSTLYRKYLEEPCVWVESNNTTLNILTSHAEIGLGFLLVLSLFSWQRNIIQTFMY 296

Query: 292 WQLLKLMYHAPVSAGYHQSVWAKIGRTVNPLVYRYAPFLNTPISAIQRWWLR 343
           WQLLKLMYH PV+A YHQSVWAKIGR++NPL++R+APFL TP+SA+QRWWLR
Sbjct: 297 WQLLKLMYHVPVTAAYHQSVWAKIGRSINPLIHRHAPFLKTPLSAVQRWWLR 348

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217075827|gb|ACJ86273.1| unknown [Medicago truncatula]

 Score =  526 bits (1356), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 252/352 (71%), Positives = 296/352 (84%), Gaps = 13/352 (3%)

Query: 1   MGEEREDSQKIKRIAAAAYDYDNDPRWADYWSNILIPPHMAARSDVVDHYKRKFYQRYID 60
           MG E+ED QK+KR+AA +YDYD+D RW DYW+N+LIPPHM++R DVV H+KRKFYQ Y+D
Sbjct: 1   MGSEKEDPQKLKRLAADSYDYDSDSRWPDYWNNVLIPPHMSSRQDVVSHFKRKFYQHYLD 60

Query: 61  PDLVVESMSQPTQASASSTSSATA--------NDRPRQRNSANPGSTTSRSSGTS-TNAG 111
            DLVVE MS  + +      + ++        ND+ R R++     +T+R+SGTS T+ G
Sbjct: 61  NDLVVEPMSLSSSSQPPRPPATSSSSSPPPRSNDQARARSTG----STNRTSGTSATSVG 116

Query: 112 SNTTSVRWDRQTIQFSVNAWVFVVAMLAIFPLIPRNLSNRAYRLSFMGTACSSIYSLYSL 171
            N   +RWDRQTI FSVNAWV VVA LA  P+IP++LS+RAYRLSFMGT CSS+YSLYS 
Sbjct: 117 PNPAPLRWDRQTILFSVNAWVLVVAFLAAVPIIPKHLSHRAYRLSFMGTTCSSLYSLYSQ 176

Query: 172 YGKPRAWNMQALQVYFQSIIATKDFIYFIYCLSFVTSHLCLKFALIPILCRSVEHVAKFL 231
           YGKPRAWNMQALQVYFQSIIATKDFIYF+YCL+FVTSHLCLKFALIPILC S EHVAKFL
Sbjct: 177 YGKPRAWNMQALQVYFQSIIATKDFIYFVYCLTFVTSHLCLKFALIPILCWSFEHVAKFL 236

Query: 232 RRNFSRSILYRKYLEDACVWVESNSTTLSILTSHAEIGLGFLLIISLLSWQRNIIQTFMY 291
           RRNFSRS LYRKYLE+ CVWVESN+TTL+ILTSHAEIGLGFLL++SL SWQRNIIQTFMY
Sbjct: 237 RRNFSRSTLYRKYLEEPCVWVESNNTTLNILTSHAEIGLGFLLVLSLFSWQRNIIQTFMY 296

Query: 292 WQLLKLMYHAPVSAGYHQSVWAKIGRTVNPLVYRYAPFLNTPISAIQRWWLR 343
           WQLLKLMYH PV+A YHQSVWAKIGR++NPL++R+APFL TP+SA+QRWWLR
Sbjct: 297 WQLLKLMYHVPVTAAYHQSVWAKIGRSINPLIHRHAPFLKTPLSAVQRWWLR 348

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388504324|gb|AFK40228.1| unknown [Medicago truncatula]

 Score =  524 bits (1349), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 251/352 (71%), Positives = 295/352 (83%), Gaps = 13/352 (3%)

Query: 1   MGEEREDSQKIKRIAAAAYDYDNDPRWADYWSNILIPPHMAARSDVVDHYKRKFYQRYID 60
           MG E+ED QK+KR+AA +YDYD+D RW DYW+N+LIPPHM++R DVV H+KRKFYQ Y+D
Sbjct: 1   MGSEKEDPQKLKRLAADSYDYDSDSRWPDYWNNVLIPPHMSSRQDVVSHFKRKFYQHYLD 60

Query: 61  PDLVVESMSQPTQASASSTSSATA--------NDRPRQRNSANPGSTTSRSSGTS-TNAG 111
            DLVVE MS  + +      + ++        ND+ R R++     +T+R+SGTS T+ G
Sbjct: 61  NDLVVEPMSLSSSSQPPRPPATSSSSSPPPRSNDQARARSTG----STNRTSGTSATSVG 116

Query: 112 SNTTSVRWDRQTIQFSVNAWVFVVAMLAIFPLIPRNLSNRAYRLSFMGTACSSIYSLYSL 171
            N   +RWDRQTI FSVNAWV VVA LA  P+IP++LS+RAYRLSFMGT CSS+YSLYS 
Sbjct: 117 PNPAPLRWDRQTILFSVNAWVLVVAFLAAVPIIPKHLSHRAYRLSFMGTTCSSLYSLYSQ 176

Query: 172 YGKPRAWNMQALQVYFQSIIATKDFIYFIYCLSFVTSHLCLKFALIPILCRSVEHVAKFL 231
           YGKPRAWNMQALQVYFQSIIATKDFIYF+YCL+FVTSHLCLKFALIPILC S EHVAKFL
Sbjct: 177 YGKPRAWNMQALQVYFQSIIATKDFIYFVYCLTFVTSHLCLKFALIPILCWSFEHVAKFL 236

Query: 232 RRNFSRSILYRKYLEDACVWVESNSTTLSILTSHAEIGLGFLLIISLLSWQRNIIQTFMY 291
           RRNFSRS LYRKYLE+ CVWVESN+TTL+ILTSHAEIGLGFLL++SL SWQRNIIQTFMY
Sbjct: 237 RRNFSRSTLYRKYLEEPCVWVESNNTTLNILTSHAEIGLGFLLVLSLFSWQRNIIQTFMY 296

Query: 292 WQLLKLMYHAPVSAGYHQSVWAKIGRTVNPLVYRYAPFLNTPISAIQRWWLR 343
           WQLLKLMYH PV+A YHQSVWAKIGR++NPL++R+APFL TP+ A+QRWWLR
Sbjct: 297 WQLLKLMYHVPVTAAYHQSVWAKIGRSINPLIHRHAPFLKTPLFAVQRWWLR 348

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358249008|ref|NP_001240233.1| uncharacterized protein LOC100789872 [Glycine max] gi|255646034|gb|ACU23504.1| unknown [Glycine max]

 Score =  522 bits (1345), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 256/347 (73%), Positives = 293/347 (84%), Gaps = 13/347 (3%)

Query: 6   EDSQKIKRIAAAAYDYDNDPRWADYWSNILIPPHMAARSDVVDHYKRKFYQRYIDPDLVV 65
           ED QK+KR+AA +YDYDND RW  YW+N+LIPPHMA+R DVV H+KRKFYQRY+DPDLVV
Sbjct: 3   EDPQKLKRLAADSYDYDNDSRWPGYWNNVLIPPHMASRDDVVSHFKRKFYQRYVDPDLVV 62

Query: 66  ESMS-------QPTQASASSTSSATANDRPRQRNSANPGSTTSRSSGTSTNAGSNT--TS 116
           E MS           ++ SS+SS   N++PR R+S     +T+R+SGTST AG     T 
Sbjct: 63  EPMSVGGSSSQPTRSSTTSSSSSPPTNNQPRARSSG----STNRTSGTSTTAGPGPSPTP 118

Query: 117 VRWDRQTIQFSVNAWVFVVAMLAIFPLIPRNLSNRAYRLSFMGTACSSIYSLYSLYGKPR 176
           +RWDRQT+ FSV AWVFVVA LA  PL+P++LS+RAYRL F+GT CSS+YSLYS YGKPR
Sbjct: 119 LRWDRQTVLFSVYAWVFVVAFLAAIPLVPKHLSHRAYRLCFLGTLCSSLYSLYSQYGKPR 178

Query: 177 AWNMQALQVYFQSIIATKDFIYFIYCLSFVTSHLCLKFALIPILCRSVEHVAKFLRRNFS 236
           AWN+QALQVYFQSI+A+KDFIYFIYCL+FVTSHLCLKFALIPILC S EHVAKFLRRNFS
Sbjct: 179 AWNLQALQVYFQSIVASKDFIYFIYCLTFVTSHLCLKFALIPILCWSFEHVAKFLRRNFS 238

Query: 237 RSILYRKYLEDACVWVESNSTTLSILTSHAEIGLGFLLIISLLSWQRNIIQTFMYWQLLK 296
           RS LYRKYLE+ CVWVESN++TL+ILTSHAEIGLGFLLIISL SWQRNIIQTFMYWQLLK
Sbjct: 239 RSTLYRKYLEEPCVWVESNNSTLNILTSHAEIGLGFLLIISLFSWQRNIIQTFMYWQLLK 298

Query: 297 LMYHAPVSAGYHQSVWAKIGRTVNPLVYRYAPFLNTPISAIQRWWLR 343
           LMYH PV+A YHQSVWA+IGRTVNPL+ R+APFL TPIS IQRWWLR
Sbjct: 299 LMYHVPVTAPYHQSVWAQIGRTVNPLIQRHAPFLKTPISTIQRWWLR 345

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	343
TAIR|locus:2076874	348	AT3G02420 "AT3G02420" [Arabido	0.988	0.974	0.681	7.1e-132

TAIR|locus:2076874 AT3G02420 "AT3G02420" [Arabidopsis thaliana (taxid:3702)]

 Score = 1293 (460.2 bits), Expect = 7.1e-132, P = 7.1e-132
 Identities = 240/352 (68%), Positives = 273/352 (77%)

Query:     1 MGEEREDSQKIKRIAAAAYDYDNDPRWADYWSNILIPPHMAARSDVVDHYKRKFYQRYID 60
             M E  EDSQ++K+IAAAA+DY+ND RWADYWSNILIPPHMA+R +VVDH+KRKFYQRYID
Sbjct:     1 MAEGGEDSQRLKKIAAAAFDYENDARWADYWSNILIPPHMASRPEVVDHFKRKFYQRYID 60

Query:    61 PDLVVESMS---------QPTQXXXXXXXXXXXNDRPRQRNSAXXXXXXXXXXXXXXXXX 111
             PDLVVE MS         +PT            N++ R RNS                  
Sbjct:    61 PDLVVEPMSTSSSSSQSARPTATSASSTASSNANEQVRSRNSGSVPRTSGPSATTGATPS 120

Query:   112 XXXXXVRWDRQTIQFSVNAWVFVVAMLAIFPLIPRNLSNRAYRLSFMGTACSSIYSLYSL 171
                  +RWD QTIQFSVNAWVFV+A+LA+ PLIP+NLSNRAYRLSFMGTACSS+YSLYSL
Sbjct:   121 S----MRWDEQTIQFSVNAWVFVIAVLAVLPLIPKNLSNRAYRLSFMGTACSSLYSLYSL 176

Query:   172 YGKPRAWNMQALQVYFQSIIATKDFIYFIYCLSFVTSHLCLKFALIPILCRSVEHVAKFL 231
             YG+PRAWNMQ LQVYFQSI+A KDFIYFIYCL+FVTSHLCLKFALIPILCR++E VAKFL
Sbjct:   177 YGRPRAWNMQGLQVYFQSIVAAKDFIYFIYCLTFVTSHLCLKFALIPILCRALEQVAKFL 236

Query:   232 RRNFSRSILYRKYLEDACVWVESNSTTLSILTSHAEXXXXXXXXXXXXXWQRNIIQTFMY 291
             RRNF RS +YRKYLED CVWVESN+TTL+IL+S AE             WQRNIIQTFMY
Sbjct:   237 RRNFGRSTIYRKYLEDPCVWVESNTTTLNILSSQAEIAIGFLLIISLLSWQRNIIQTFMY 296

Query:   292 WQLLKLMYHAPVSAGYHQSVWAKIGRTVNPLVYRYAPFLNTPISAIQRWWLR 343
             WQLLKLMY APV+AGYHQS W++IGRTV P++ RYAPFLNTP+SA+QRWW R
Sbjct:   297 WQLLKLMYQAPVTAGYHQSTWSRIGRTVTPIIQRYAPFLNTPVSAVQRWWFR 348


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.327   0.136   0.441    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      343       297   0.00093  115 3  11 22  0.43    33
                                                     33  0.44    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  618 (66 KB)
  Total size of DFA:  250 KB (2132 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.44u 0.16s 20.60t   Elapsed:  00:00:01
  Total cpu time:  20.44u 0.16s 20.60t   Elapsed:  00:00:01
  Start:  Sat May 11 08:57:56 2013   End:  Sat May 11 08:57:57 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_IV000893 hypothetical protein (345 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	343
pfam03661	248	pfam03661, UPF0121, Uncharacterized protein family	3e-05

>gnl|CDD|146346 pfam03661, UPF0121, Uncharacterized protein family (UPF0121)

 Score = 44.4 bits (105), Expect = 3e-05
 Identities = 34/174 (19%), Positives = 67/174 (38%), Gaps = 15/174 (8%)

Query: 132 VFVV--AMLAIFPLIPRNLSNRAYRLSFMGTACSSIYSLYSLYGKPRAWNMQALQVYFQS 189
           +  +  +++ + PL+    +   Y  + +  A +S   L+      R  + Q  + +   
Sbjct: 33  LLTIFFSLMFVLPLLGSQPAASFYYRALLANAATSALRLHQ-----RLPHFQLSREFLAQ 87

Query: 190 IIATKDFIYFIYCLSFVTSHLCLKFALIPILCRSVEHVAKF----LRRNFSRSILYRKYL 245
           +I      Y +Y L F+ S+     +L+P+   S+ H A +    L      S    + L
Sbjct: 88  LILEDSCHYLLYSLIFLNSYPVT-MSLLPVFLFSLLHAASYTKKLLDTTGQNSSWLARSL 146

Query: 246 EDACVWVESNSTTLSILTSHAEIGLGFLLIISLLSWQRNIIQTFMYWQLLKLMY 299
                 VE     +    +  EI L    +    S Q  ++  F+Y++ L L Y
Sbjct: 147 ISK---VEFQQQNILRFIACNEIFLMPATVFMAFSGQAGLLLPFIYYRFLSLRY 197

Uncharacterized integral membrane protein family. Length = 248

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	343
PF03661	247	UPF0121: Uncharacterised protein family (UPF0121);	100.0
KOG4002	264	consensus Uncharacterized integral membrane protei	99.98
PF12238	205	MSA-2c: Merozoite surface antigen 2c; InterPro: IP	81.32

>PF03661 UPF0121: Uncharacterised protein family (UPF0121); InterPro: IPR005344 Uncharacterised integral membrane protein family

Probab=100.00  E-value=1.7e-47  Score=360.30  Aligned_cols=210  Identities=27%  Similarity=0.427  Sum_probs=184.1

Q ss_pred             chhhhHHHHHHHHHHHHHHHhcccccccChHHHHHHHHHHHHHHHHHHHHHcCCCCcchhHhHHHHHHHHhccCchHHHH
Q 019305          121 RQTIQFSVNAWVFVVAMLAIFPLIPRNLSNRAYRLSFMGTACSSIYSLYSLYGKPRAWNMQALQVYFQSIIATKDFIYFI  200 (343)
Q Consensus       121 ~~t~~F~~~awvl~~a~l~ilP~~~~~ls~~~Yr~allga~~s~~i~lyq~~g~p~~~n~~~~~~~lq~ll~ddn~qYLl  200 (343)
                      -++.+|..+.|+++++++|++|+.+....+.+||.+++|++++|||++||+++++++     .++++++++.|||+|||+
T Consensus        24 lq~~~f~~~~~~l~~~~~y~l~~~~~~~~~~~Y~~all~~a~t~~i~l~q~~~~~~~-----~~~~l~~ll~ddn~~YL~   98 (247)
T PF03661_consen   24 LQFAWFLGHVFTLLCSLLYILPILFFSLAYSAYRKALLGAAATYAIVLYQRLPRFQF-----SRAYLQRLLLDDNFQYLL   98 (247)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHhcccccc-----cHHHHHHHHhcCcHHHHH
Confidence            378899999999999999999997666666699999999999999999999987664     567999999999999999


Q ss_pred             HHHHHHhhcccceehhhHHHHHHHHHHHHHHHHhccchHHHHH-HHHhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 019305          201 YCLSFVTSHLCLKFALIPILCRSVEHVAKFLRRNFSRSILYRK-YLEDACVWVESNSTTLSILTSHAEIGLGFLLIISLL  279 (343)
Q Consensus       201 ~alifl~s~~p~~laLlP~~lfSlfHvatf~r~~l~~~~~~~~-~~~~~~~~V~~n~~~~m~l~A~~EI~l~~~LIl~lf  279 (343)
                      ||++|++++ |++++|+|+++||++|+++|+++++.+...... +.+.+++||++|++++|+++|++||++++++|+++|
T Consensus        99 ~al~fl~~~-p~~~~llP~~lfSlfHv~ty~~~~l~~~~~~~~~~~~~i~~~v~~~~~~~m~~~A~~Ei~l~~~li~~lf  177 (247)
T PF03661_consen   99 YALIFLFSP-PITLALLPFFLFSLFHVATYLRKLLPPTGPNSSPLARSIISFVKQNNDKIMRLVANIEIFLLPLLIFMLF  177 (247)
T ss_pred             HHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999997 899999999999999999999998654211111 222356889999999999999999999999999999


Q ss_pred             hcchhHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhhhhhc-ccCCC-CccchhhHH
Q 019305          280 SWQRNIIQTFMYWQLLKLMYHAPVSAGYHQSVWAKIGRTVNPLV-YRYAP-FLNTPISAI  337 (343)
Q Consensus       280 t~~rSii~~fiY~~FLklRY~sp~~s~y~R~af~~l~~~id~~i-~r~~P-~l~~~i~~~  337 (343)
                      ++++||+++++|++|||+||++ ++|+|+|++|+++++++|+++ |+.|| ++++.+..+
T Consensus       178 ~~~~s~i~~~iY~~FLklRY~~-~~s~y~r~~f~~l~~~id~~v~hp~~P~~v~~~~~~~  236 (247)
T PF03661_consen  178 FGRRSIILPFIYYQFLKLRYAS-SRSPYTRSAFAQLRVRIDGLVSHPSCPPFVRQVYHKA  236 (247)
T ss_pred             HccchHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence            9999999999999999999996 469999999999999999999 77777 566665443

; GO: 0016021 integral to membrane

>KOG4002 consensus Uncharacterized integral membrane protein [Function unknown]

Probab=99.98  E-value=1.1e-31  Score=249.71  Aligned_cols=202  Identities=19%  Similarity=0.344  Sum_probs=165.2

Q ss_pred             hhhHHHHHHHHHHHHHHHhcccccccChHHHHHHHHHHHHHHHHHHHHHcCCCCcchhHhHHHHHHHHhccCchHHHHHH
Q 019305          123 TIQFSVNAWVFVVAMLAIFPLIPRNLSNRAYRLSFMGTACSSIYSLYSLYGKPRAWNMQALQVYFQSIIATKDFIYFIYC  202 (343)
Q Consensus       123 t~~F~~~awvl~~a~l~ilP~~~~~ls~~~Yr~allga~~s~~i~lyq~~g~p~~~n~~~~~~~lq~ll~ddn~qYLl~a  202 (343)
                      .+++.+..-.+.+++.|++|+.+...+. .++ .+++.+.+++.+++|+...-     ...+.++++++.||||||++|+
T Consensus        40 s~L~alr~~~fy~s~~y~~~~~~f~~~~-~~~-~~l~na~t~al~l~qr~~~~-----~l~~~f~arli~eds~~Ylv~s  112 (264)
T KOG4002|consen   40 SVLYALRLSTFYFSVTYLIPLYGFGKIA-SQK-FFLANAATSALRLHQRLAMF-----ALNKLFLARLIIEDSVHYLVYS  112 (264)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHH-HHH-HHHHHhHhhhhhHHHHHhHH-----HHHHHHHHHHHHccchHHHHHH
Confidence            4444444445558888888886543322 255 78889999999999988643     2356799999999999999999


Q ss_pred             HHHHhhcccceehhhHHHHHHHHHHHHHHHHhcc---c--hHHHHHHHHhHHHHHHhh-hhhHHHHHHHHHHHHHHHHHH
Q 019305          203 LSFVTSHLCLKFALIPILCRSVEHVAKFLRRNFS---R--SILYRKYLEDACVWVESN-STTLSILTSHAEIGLGFLLII  276 (343)
Q Consensus       203 lifl~s~~p~~laLlP~~lfSlfHvatf~r~~l~---~--~~~~~~~~~~~~~~V~~n-~~~~m~l~A~~EI~l~~~LIl  276 (343)
                      ++|++.+ |+.+.|+|+++|+++|+++|+++.+.   .  ++..+..+++   ++.++ .++++.++|+.||+++++++.
T Consensus       113 lifl~~~-p~~~sL~P~l~ya~lH~~ty~~kvL~~~~~ns~~~~~s~i~~---f~~q~~~q~~l~~va~~eifll~~l~~  188 (264)
T KOG4002|consen  113 LIFLFLR-PFSFSLLPVLIYAVLHASTYLNKVLLVIGQNSSGFFLSMISK---FEAQYTLQNALKLVAFNEIFLLPRLFF  188 (264)
T ss_pred             HHHHHhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHH---HHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence            9999998 89999999999999999999999753   2  4555555554   23333 399999999999999999999


Q ss_pred             HHHhcchhHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhhhhhccc-CC-CCccchhhHHh
Q 019305          277 SLLSWQRNIIQTFMYWQLLKLMYHAPVSAGYHQSVWAKIGRTVNPLVYR-YA-PFLNTPISAIQ  338 (343)
Q Consensus       277 ~lft~~rSii~~fiY~~FLklRY~sp~~s~y~R~af~~l~~~id~~i~r-~~-P~l~~~i~~~~  338 (343)
                      ++|.+++|++.+++|++||||||.   +|+|+|++|++++.++|+++.| .| |+++..+..++
T Consensus       189 ~iF~~~gsll~~v~Y~~Fl~LRY~---rs~y~R~aFaq~rlrmd~~vs~~s~Ppfikrl~~~~k  249 (264)
T KOG4002|consen  189 LIFSGKGSLLAPVIYYRFLKLRYR---RSPYMRAAFAQLRLRMDALVSRPSCPPFIKRLWNGYK  249 (264)
T ss_pred             HHHhccchhhhHhhHhhheeeeec---CChhHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHH
Confidence            999999999999999999999997   9999999999999999999966 54 56776666554

>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis

Probab=81.32  E-value=8.3  Score=36.08  Aligned_cols=11  Identities=27%  Similarity=0.745  Sum_probs=5.7

Q ss_pred             HHHhhhhcCCC
Q 019305           52 RKFYQRYIDPD   62 (343)
Q Consensus        52 ~k~yk~~iDp~   62 (343)
                      -||++.++|.+
T Consensus       108 v~~ck~Fl~~~  118 (205)
T PF12238_consen  108 VKFCKDFLDSE  118 (205)
T ss_pred             HHHHHHHhccc
Confidence            34555555544

Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	343
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 6e-04
 Identities = 50/268 (18%), Positives = 85/268 (31%), Gaps = 102/268 (38%)

Query: 118 RWDR----------QTIQFSVNAW-------VFVVAMLAIFP---LIP------------ 145
            WD             I+ S+N         +F    L++FP    IP            
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD--RLSVFPPSAHIPTILLSLIWFDVI 400

Query: 146 ----RNLSNRAYRLSFM-GTACSSIYSLYSLY--GKPRAWNMQALQVYFQSIIA------ 192
                 + N+ ++ S +      S  S+ S+Y   K +  N  AL    +SI+       
Sbjct: 401 KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH---RSIVDHYNIPK 457

Query: 193 ---TKDFI------YFIYCLSFVTSHLCL-----KFALIPILCRSVEHVAKFLRR----- 233
              + D I      YF Y  S +  HL       +  L  ++      + + +R      
Sbjct: 458 TFDSDDLIPPYLDQYF-Y--SHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAW 514

Query: 234 NFSRSIL--------YRKYLEDACVWVESNSTTLSILTSHAEIGLGFLLIIS---LLSWQ 282
           N S SIL        Y+ Y+ D     E     +          L FL  I    + S  
Sbjct: 515 NASGSILNTLQQLKFYKPYICDNDPKYERLVNAI----------LDFLPKIEENLICSKY 564

Query: 283 RNIIQTFMYWQLLKLMYHAPVSAGYHQS 310
            ++++       + LM      A + ++
Sbjct: 565 TDLLR-------IALMA--EDEAIFEEA 583

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 9e-04
 Identities = 46/391 (11%), Positives = 111/391 (28%), Gaps = 122/391 (31%)

Query: 3   EEREDSQKIKRIAAAAYDYDNDPRWADYWSNILIPPHMAARSDVVDHYKRKFYQRYIDPD 62
           E+R+ S   +      Y    D  + D   N +   +  +R       ++   +     +
Sbjct: 101 EQRQPSMMTRM-----YIEQRDRLYND---NQVFAKYNVSRLQPYLKLRQALLELRPAKN 152

Query: 63  LVVESMSQPTQASASSTSSATANDRPRQRNSANPGSTTSRSSGTSTNAGSNTTSVRWDRQ 122
           ++++ +     +  +  +         Q                          + W   
Sbjct: 153 VLIDGV---LGSGKTWVALDVCLSYKVQCKMDFK--------------------IFW--- 186

Query: 123 TIQFS-VNAWVFVVAML-AIFPLIPRNLSNRAYRLSFMGTACSSIYS----LYSLYGKPR 176
            +     N+   V+ ML  +   I  N ++R+   S +     SI +    L        
Sbjct: 187 -LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245

Query: 177 A-------WNMQALQVYF----QSIIATKDFIYFIYCLSFVTSHLCLKFALIPILCRSVE 225
                    N +A    F    + ++ T+      +  +  T+H+            S++
Sbjct: 246 CLLVLLNVQNAKAWN-AFNLSCKILLTTRFKQVTDFLSAATTTHI------------SLD 292

Query: 226 HVAKFLRRNFSRSILYRKYLEDACVWVESNSTTLSILTSHAEIGLGFLLIISLLS----- 280
           H +  L  +  +S+L +        +++     L       E+       +S+++     
Sbjct: 293 HHSMTLTPDEVKSLLLK--------YLDCRPQDLP-----REVLTTNPRRLSIIAESIRD 339

Query: 281 ----WQR----------NIIQTF-----------MYWQLLKLMYHAPVSAGYHQSVWAKI 315
               W             II++            M+ +L      A +       +W  +
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDV 399

Query: 316 GRT-----VNPLVYRYAPFLNTPISAIQRWW 341
            ++     VN L            S +++  
Sbjct: 400 IKSDVMVVVNKLHKY---------SLVEKQP 421

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00