Citrus Sinensis ID: 019307

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340---
Protein Sequence
MGRPPCCDKIGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQTGSDGGQNNQDGFSSTSQQASNKGQWERRLQTDIHMAKQALCEALSLDKTSPTSPANLLLSPDQSNLKPMSSTTYNNTPYASNAENISRLLQNWMKNPPKISETTQDSFTNTAYASAAGSGSNISSEGALSATTPEGFDSLFSFNSSNSDASQSETTANLTSETSLFQDESKPKLDSRHHHHHQVPLTLLEKWLFDDVAAAHQGHDDDDLINMSLEDSTVGFF
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHcccccHHHHcccccccccccccccHHHHHHHHHHHHHHccHHHHHHccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccHHHHHHHHHHHHHccccccccccHHccccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccHHHHHcccccccHHHHHHHHHHHcccHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcHHHHHHHcccHHHHHcccccccccccc
Coil and Loop (DISEMBL)
mgrppccdkigvkkgpwtpeEDIILVSYIQehgpgnwrsvptntgllrcskscRLRWtnylrpgikrgnftdHEEKMIIHLQALLGNRWAAIASylpqrtdndikNYWNTHLKKKLKKlqtgsdggqnnqdgfsstsqqasnkgQWERRLQTDIHMAKQALCEAlsldktsptspanlllspdqsnlkpmssttynntpyasnaENISRLLQNwmknppkisettqdsftntayasaagsgsnissegalsattpegfdslfsfnssnsdasqsettanltsetslfqdeskpkldsrhhhhhqvplTLLEKWLFDDVaaahqghddddlinmsledstvgff
Flexible Loop (DISEMBL)
mgrppccdkigvkkgpwtpeEDIILVSYIQehgpgnwrsvptntgLLRCSKSCRLRWTNYLRPGIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQTGSDGgqnnqdgfsstsqqasnKGQWERRLQTDIHMAKQALCEALSLDKTSPTSPANLLlspdqsnlkpmsSTTYNNTPYASNAENISRLLQNWMKNPPKISETTQDSFTNTAYASAAGSGSNISSEGALSATTPEGFDSLFSFNSSNSDASQSETTANLTSETSLFQDESKPKLDSRHHHHHQVPLTLLEKWLFDDVAAAHQGHDDDDLINMSLEDSTVGFF
Low Complexity Region (SEG)
MGRPPCCDKIGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHlkkklkklQTGSDGGQNNQDGFSSTSQQASNKGQWERRLQTDIHMAKQALCEALSLDKTSPTSPANLLLSPDQSNLKPMSSTTYNNTPYASNAENISRLLQNWMKNPPKISETTQDSFTNTayasaagsgsnissegaLSATTPEGfdslfsfnssnsdasqsETTANLTSETSLFQDESKPKLDSRHHHHHQVPLTLLEKWLFDDVAAAHQGHDDDDLINMSLEDSTVGFF
Disordered region (IsUnstruct)
*****CCDKIGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLK*************************************************************************************************************************************************************************************************LTLLEKWLFDDVAAAH*********************
Disordered Region (DISOPRED)
*GRPPCCDKIGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLK*************************************************************************************************L***********************************************************************************************LTLLEKWLFDDVAAAHQGHDDDDLINMSLEDS*VGFF
Disordered Region (DISEMBL)
MGRPPCCDKIGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLK*****************************ERRLQTDIHMAKQALCEALSLDKTSPTSPANLLLSPDQSNLKPMSSTTYNNTPYASNAENISRLLQNWMKNPPKISETTQDSFTNTAYAS**************SATTPEGFDSLFSFNS**************************************VPLTLLEKWLFDDVAAAHQGHDDDDLINMSLEDSTVGFF
Disordered Region (DISPRO)
***PPCCDKIGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKL****************************RRLQTDIHMAKQALCEALSL*****************************************RLLQNWMKN**************************************************************************************QVPLTLLEKWLFDDVAAAHQGHDDDDLINMSLEDST*GFF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGRPPCCDKIGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQTGSDGGQNNQDGFSSTSQQASNKGQWERRLQTDIHMAKQALCEALSLDKTSPTSPANLLLSPDQSNLKPMSSTTYNNTPYASNAENISRLLQNWMKNPPKISETTQDSFTNTAYASAAGSGSNISSEGALSATTPEGFDSLFSFNSSNSDASQSETTANLTSETSLFQDESKPKLDSRHHHHHQVPLTLLEKWLFDDVAAAHQGHDDDDLINMSLEDSTVGFF
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	343	2.2.26 [Sep-21-2011]
P81392	316	Myb-related protein 306 O	N/A	no	0.892	0.968	0.623	1e-106
Q7XBH4	257	Myb-related protein Myb4	no	no	0.338	0.451	0.715	3e-49
P20024	340	Myb-related protein Zm1 O	N/A	no	0.396	0.4	0.580	6e-46
Q8GWP0	360	Transcription factor MYB3	no	no	0.355	0.338	0.664	2e-44
P81393	232	Myb-related protein 308 O	N/A	no	0.536	0.793	0.480	3e-44
P27898	399	Myb-related protein P OS=	N/A	no	0.361	0.310	0.609	6e-44
Q38851	236	Transcription repressor M	no	no	0.338	0.491	0.663	1e-43
Q50EX6	294	Protein ODORANT1 OS=Petun	N/A	no	0.346	0.404	0.655	1e-43
Q9SPG2	366	Transcription factor MYB2	no	no	0.355	0.333	0.612	2e-43
Q9SZP1	282	Transcription repressor M	no	no	0.338	0.411	0.646	4e-43

>sp|P81392|MYB06_ANTMA Myb-related protein 306 OS=Antirrhinum majus GN=MYB306 PE=2 SV=1

 Score =  385 bits (990), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 210/337 (62%), Positives = 246/337 (72%), Gaps = 31/337 (9%)

Query: 1   MGRPPCCDKIGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNY 60
           MGRPPCCDKIGVKKGPWTPEEDIILVSYIQEHGPGNWR++P+NTGLLRCSKSCRLRWTNY
Sbjct: 1   MGRPPCCDKIGVKKGPWTPEEDIILVSYIQEHGPGNWRAIPSNTGLLRCSKSCRLRWTNY 60

Query: 61  LRPGIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQ 120
           LRPGIKRG+FT+HEEKMIIHLQALLGNRWAAIASYLP RTDNDIKNYWNTHLKKKL+KLQ
Sbjct: 61  LRPGIKRGDFTEHEEKMIIHLQALLGNRWAAIASYLPHRTDNDIKNYWNTHLKKKLEKLQ 120

Query: 121 TGSDGGQNNQDG-FSSTSQQASNKGQWERRLQTDIHMAKQALCEALSLDKTSPTSPANLL 179
           +  +G    QDG  S  S ++ +KGQWERRLQTDIHMAKQALC+ALSLDKTS ++    L
Sbjct: 121 SPENG--KCQDGNSSVDSDKSVSKGQWERRLQTDIHMAKQALCDALSLDKTSSSTDDPKL 178

Query: 180 LSPDQSNLKPMSSTTYNNTPYASNAENISRLLQNWMKNPPKISETT------QDSFTNTA 233
            +   +  +P  ++TY      S+AENI+RLL+NW K  P  + +T      + + T+  
Sbjct: 179 STVQTTQPRPFQASTY------SSAENIARLLENWKKKSPVNASSTSQAGSSESTTTSFN 232

Query: 234 YASAAGSGSNISSEGALSATTPEGFDSLFSFNSSNSDASQSETTANLTSETSL--FQDES 291
           Y S   S S+  SEGA+S        +  SFNSSNSD  +    A   + T+   FQDES
Sbjct: 233 YPSVCLSTSS-PSEGAIST-------NFISFNSSNSDILEDHDQAKFEAATNGVNFQDES 284

Query: 292 KPKLDSRHHHHHQVPLTLLEKWLFDDVAAAHQGHDDD 328
           KP LD      +Q+PL+LLEKWL DD AA  QG D D
Sbjct: 285 KPILD------NQMPLSLLEKWLLDDSAAVAQGQDVD 315

Transcription factor.
Antirrhinum majus (taxid: 4151)

>sp|Q7XBH4|MYB4_ORYSJ Myb-related protein Myb4 OS=Oryza sativa subsp. japonica GN=MYB4 PE=2 SV=2

 Score =  196 bits (497), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 83/116 (71%), Positives = 97/116 (83%)

Query: 1   MGRPPCCDKIGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNY 60
           MGR PCC+K+G+KKGPWTPEED +LV++IQ HG GNWR++P   GLLRC KSCRLRW NY
Sbjct: 1   MGRAPCCEKMGLKKGPWTPEEDKVLVAHIQRHGHGNWRALPKQAGLLRCGKSCRLRWINY 60

Query: 61  LRPGIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKL 116
           LRP IKRGNF+  EE  IIHL  LLGNRW+AIA+ LP RTDN+IKN W+THLKK+L
Sbjct: 61  LRPDIKRGNFSKEEEDTIIHLHELLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRL 116

Putative transcription factor which is may be involved in cold stress response.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P20024|MYB1_MAIZE Myb-related protein Zm1 OS=Zea mays PE=2 SV=1

 Score =  184 bits (468), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 79/136 (58%), Positives = 101/136 (74%)

Query: 2   GRPPCCDKIGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYL 61
           GR PCC K+G+ +G WTP+ED+ L++YIQ+HG  NWR++P   GLLRC KSCRLRW NYL
Sbjct: 4   GRAPCCAKVGLNRGSWTPQEDMRLIAYIQKHGHTNWRALPKQAGLLRCGKSCRLRWINYL 63

Query: 62  RPGIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQT 121
           RP +KRGNFTD EE+ II L  LLGN+W+ IA+ LP RTDN+IKN WNTHLKKK+ + + 
Sbjct: 64  RPDLKRGNFTDEEEEAIIRLHGLLGNKWSKIAACLPGRTDNEIKNVWNTHLKKKVAQREK 123

Query: 122 GSDGGQNNQDGFSSTS 137
              G  +   G  +T+
Sbjct: 124 KKAGAGSGDAGTPATA 139

Transcription factor that regulates positively genes involved in anthocyanin biosynthesis such as A1.

Zea mays (taxid: 4577)

>sp|Q8GWP0|MYB39_ARATH Transcription factor MYB39 OS=Arabidopsis thaliana GN=MYB39 PE=2 SV=1

 Score =  179 bits (455), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 83/125 (66%), Positives = 96/125 (76%), Gaps = 3/125 (2%)

Query: 1   MGRPPCCDK-IGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTN 59
           MGR PCCD+  GVKKGPW PEED  L +YI E+G GNWRS+P   GL RC KSCRLRW N
Sbjct: 1   MGRSPCCDQDKGVKKGPWLPEEDDKLTAYINENGYGNWRSLPKLAGLNRCGKSCRLRWMN 60

Query: 60  YLRPGIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKL 119
           YLRP I+RG F+D EE  I+ L ALLGN+W+ IA +LP RTDN+IKNYWNTH++KKL  L
Sbjct: 61  YLRPDIRRGKFSDGEESTIVRLHALLGNKWSKIAGHLPGRTDNEIKNYWNTHMRKKL--L 118

Query: 120 QTGSD 124
           Q G D
Sbjct: 119 QMGID 123

Arabidopsis thaliana (taxid: 3702)

>sp|P81393|MYB08_ANTMA Myb-related protein 308 OS=Antirrhinum majus GN=MYB308 PE=2 SV=1

 Score =  179 bits (454), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 98/204 (48%), Positives = 127/204 (62%), Gaps = 20/204 (9%)

Query: 1   MGRPPCCDKIGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNY 60
           MGR PCC+K    KG WT EED  LV+YI+ HG G WRS+P   GLLRC KSCRLRW NY
Sbjct: 1   MGRSPCCEKAHTNKGAWTKEEDDRLVAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60

Query: 61  LRPGIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQ 120
           LRP +KRGNFT+ E+++II L +LLGN+W+ IA  LP RTDN+IKNYWNTH+++KL  L 
Sbjct: 61  LRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKL--LS 118

Query: 121 TGSD--------GGQNNQDGFSSTSQQASNKGQWE--RRLQTDIHMAK-----QALCEAL 165
            G D         G  +QD  ++ S   +N  + +   ++  DI + +     Q  C  L
Sbjct: 119 RGIDPTTHRSINDGTASQDQVTTISFSNANSKEEDTKHKVAVDIMIKEENSPVQERCPDL 178

Query: 166 SLD-KTSPTSPANLLLSPDQSNLK 188
           +LD K SP  P    ++  Q NLK
Sbjct: 179 NLDLKISP--PCQQQINYHQENLK 200

Transcription factor.

Antirrhinum majus (taxid: 4151)

>sp|P27898|MYBP_MAIZE Myb-related protein P OS=Zea mays GN=P PE=2 SV=1

 Score =  178 bits (451), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 78/128 (60%), Positives = 97/128 (75%), Gaps = 4/128 (3%)

Query: 1   MGRPPCCDKIGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNY 60
           MGR PCC+K+G+K+G WT EED +L +YI EHG G+WRS+P N GLLRC KSCRLRW NY
Sbjct: 1   MGRTPCCEKVGLKRGRWTAEEDQLLANYIAEHGEGSWRSLPKNAGLLRCGKSCRLRWINY 60

Query: 61  LRPGIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKL---- 116
           LR  +KRGN +  EE +II L A LGNRW+ IAS+LP RTDN+IKNYWN+HL +++    
Sbjct: 61  LRADVKRGNISKEEEDIIIKLHATLGNRWSLIASHLPGRTDNEIKNYWNSHLSRQIHTYR 120

Query: 117 KKLQTGSD 124
           +K   G D
Sbjct: 121 RKYTAGPD 128

Transcription factor postulated to regulate the biosynthetic pathway of a flavonoid-derived pigment in certain floral tissues.

Zea mays (taxid: 4577)

>sp|Q38851|MYB6_ARATH Transcription repressor MYB6 OS=Arabidopsis thaliana GN=MYB6 PE=1 SV=1

 Score =  177 bits (448), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 77/116 (66%), Positives = 91/116 (78%)

Query: 1   MGRPPCCDKIGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNY 60
           MGR PCC+K    KG WT EED  LV YI+ HG G WRS+P + GLLRC KSCRLRW NY
Sbjct: 1   MGRSPCCEKAHTNKGAWTKEEDQRLVDYIRNHGEGCWRSLPKSAGLLRCGKSCRLRWINY 60

Query: 61  LRPGIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKL 116
           LRP +KRGNFTD E+++II L +LLGN+W+ IA  LP RTDN+IKNYWNTH+K+KL
Sbjct: 61  LRPDLKRGNFTDDEDQIIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKL 116

Arabidopsis thaliana (taxid: 3702)

>sp|Q50EX6|ODO1_PETHY Protein ODORANT1 OS=Petunia hybrida GN=ODO1 PE=2 SV=1

 Score =  177 bits (448), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 78/119 (65%), Positives = 94/119 (78%)

Query: 1   MGRPPCCDKIGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNY 60
           MGR PCCDK+GVKKGPWT EED  L+S+I  +G   WR+VP   GL RC KSCRLRWTNY
Sbjct: 1   MGRQPCCDKLGVKKGPWTAEEDKKLISFILTNGQCCWRAVPKLAGLKRCGKSCRLRWTNY 60

Query: 61  LRPGIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKL 119
           LRP +KRG  +D EEK++I L + LGNRW+ IA+ LP RTDN+IKN+WNTH+KKKL K+
Sbjct: 61  LRPDLKRGLLSDAEEKLVIDLHSRLGNRWSKIAARLPGRTDNEIKNHWNTHIKKKLLKM 119

R2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development.

Petunia hybrida (taxid: 4102)

>sp|Q9SPG2|MYB28_ARATH Transcription factor MYB28 OS=Arabidopsis thaliana GN=MYB28 PE=1 SV=1

 Score =  176 bits (446), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 76/124 (61%), Positives = 92/124 (74%), Gaps = 2/124 (1%)

Query: 1   MGRPPCCDKIGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNY 60
           M R PCC   G+KKG WT EED  L+SYI +HG G WR +P   GL RC KSCRLRWTNY
Sbjct: 1   MSRKPCCVGEGLKKGAWTTEEDKKLISYIHDHGEGGWRDIPQKAGLKRCGKSCRLRWTNY 60

Query: 61  LRPGIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQ 120
           L+P IKRG F+  EE++II L A  GN+W+ IA +LP+RTDN+IKNYWNTHLKK+L  ++
Sbjct: 61  LKPEIKRGEFSSEEEQIIIMLHASRGNKWSVIARHLPRRTDNEIKNYWNTHLKKRL--ME 118

Query: 121 TGSD 124
            G D
Sbjct: 119 QGID 122

Major regulator of aliphatic glucosinolates (GLSs) biosynthesis, both short- or long-chained. Together with MYB29/HAG3 and MYB76/HAG2, promotes aliphatic glucosinolate biosynthesis but represses indolic glucosinolate biosynthesis. Prevents insect performance (e.g. lepidopteran insect Mamestra brassicae and Spodoptera exigua) by promoting glucosinolates.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZP1|MYB4_ARATH Transcription repressor MYB4 OS=Arabidopsis thaliana GN=MYB4 PE=1 SV=1

 Score =  175 bits (444), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 75/116 (64%), Positives = 91/116 (78%)

Query: 1   MGRPPCCDKIGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNY 60
           MGR PCC+K    KG WT EED  LV+YI+ HG G WRS+P   GLLRC KSCRLRW NY
Sbjct: 1   MGRSPCCEKAHTNKGAWTKEEDERLVAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60

Query: 61  LRPGIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKL 116
           LRP +KRGNFT+ E+++II L +LLGN+W+ IA  LP RTDN+IKNYWNTH+++KL
Sbjct: 61  LRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKL 116

Transcription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	343
255547411	332	r2r3-myb transcription factor, putative	0.897	0.927	0.632	1e-114
302398935	374	MYB domain class transcription factor [M	0.962	0.882	0.622	1e-114
363806964	319	uncharacterized protein LOC100807020 [Gl	0.927	0.996	0.639	1e-111
225457423	307	PREDICTED: myb-related protein 306 [Viti	0.892	0.996	0.673	1e-110
117957143	307	R2R3 Myb30 transcription factor [Vitis v	0.892	0.996	0.670	1e-109
356516796	333	PREDICTED: myb-related protein 306-like	0.953	0.981	0.613	1e-108
357458775	310	R2R3-MYB transcription factor [Medicago	0.892	0.987	0.585	1e-105
224140977	322	predicted protein [Populus trichocarpa]	0.868	0.925	0.626	1e-105
75107027	316	RecName: Full=Myb-related protein 306 gi	0.892	0.968	0.623	1e-104
225452821	327	PREDICTED: myb-related protein 306 isofo	0.941	0.987	0.615	1e-103

>gi|255547411|ref|XP_002514763.1| r2r3-myb transcription factor, putative [Ricinus communis] gi|223546367|gb|EEF47869.1| r2r3-myb transcription factor, putative [Ricinus communis]

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 231/365 (63%), Positives = 264/365 (72%), Gaps = 57/365 (15%)

Query: 1   MGRPPCCDKIGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNY 60
           MGRPPCC+KIGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNY
Sbjct: 3   MGRPPCCEKIGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNY 62

Query: 61  LRPGIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQ 120
           LRPGIKRGNFTDHEEKMI+HLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKL +L+
Sbjct: 63  LRPGIKRGNFTDHEEKMIVHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLTELK 122

Query: 121 TGSDGGQNNQDGFSSTSQQASNKGQWERRLQTDIHMAKQALCEALSLDKTSPTSP----- 175
            G D  +       S SQ    KGQWERRLQTDIH+AKQALCEALSLDK  PT+P     
Sbjct: 123 DGQDLDR------LSVSQP---KGQWERRLQTDIHLAKQALCEALSLDK--PTTPLTHLK 171

Query: 176 -----------ANLLLSPDQSNLKPMSSTTYNNTPYASNAENISRLLQNWMKNPPKISET 224
                      +NL++ P Q+        +  +T YAS+AENI+RLL+NWMKN P+   T
Sbjct: 172 PSVATTGANGASNLIIRPYQAQ------ESNTSTAYASSAENIARLLENWMKNSPRQVLT 225

Query: 225 TQDSFTNTAYASAAGSGSNISSEGALSATTPEG---FDSLFSFNSSNSDASQS-ETTANL 280
            ++S +              S+EGA S T P            +SSNSDASQS +  ANL
Sbjct: 226 AENSSS--------------STEGAHSTTIPSSQGFNLLFSFNSSSNSDASQSVDENANL 271

Query: 281 TSETSLFQDESKPKLDSRHHHHH--QVPLTLLEKWLFDDVAAAHQGHDDDDLINMSLEDS 338
           T ETSLFQDESK  ++  HH+HH  QVPL+LLEKWLFD+ A   QGH  DDL+N+SLE++
Sbjct: 272 TPETSLFQDESKSDMEDNHHNHHLQQVPLSLLEKWLFDEGAV--QGH--DDLVNISLEET 327

Query: 339 TVGFF 343
            +G F
Sbjct: 328 AIGLF 332

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398935|gb|ADL36762.1| MYB domain class transcription factor [Malus x domestica]

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 241/387 (62%), Positives = 271/387 (70%), Gaps = 57/387 (14%)

Query: 1   MGRPPCCDKIGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNY 60
           MGRPPCCDK+GVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNY
Sbjct: 1   MGRPPCCDKVGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNY 60

Query: 61  LRPGIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQ 120
           LRPGIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQ
Sbjct: 61  LRPGIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQ 120

Query: 121 TGSDG--GQNNQDGFSSTSQQASNKGQWERRLQTDIHMAKQALCEALSLDKTSPTSPANL 178
           TG DG    N+QDG  ++  Q  +KGQWERRLQTDIHMAKQALCEALS+DK +  S   +
Sbjct: 121 TGLDGHDHHNHQDG--NSHDQPISKGQWERRLQTDIHMAKQALCEALSIDKPNVISTTTV 178

Query: 179 LLSPDQSNLKP--------------MSSTTYNNTPYASNAENISRLLQNWMKNPPKI--- 221
                  +LKP               S+  ++ + YASN ENI++LL+NWMKN PK+   
Sbjct: 179 SHDLHLQDLKPSINIGNYNINDNPSTSTRPHHTSTYASNTENIAKLLENWMKNSPKVSAH 238

Query: 222 ---SETTQDSFTNT--------------AYASAAGSGSNISSEGALSATTP--EGFDSLF 262
              S+ T    TN+              A A+  G   + SSEGA SATT   + FDSLF
Sbjct: 239 QTNSDQTNADQTNSFNNNNNNDNDNKGGATATTRGRSMSTSSEGAHSATTTPDQAFDSLF 298

Query: 263 SFNSSNSDASQS----ETTANLTSE--TSLFQDESKPKLDSRHHHHHQVPLTLLEKWLFD 316
           SFNSS SD SQS    E  AN  ++  + LFQDESKP L+       QVPL+LLEKWL D
Sbjct: 299 SFNSSPSDVSQSMSVDENNANFIADQASCLFQDESKPNLEG------QVPLSLLEKWLLD 352

Query: 317 DVAAAHQGHDDDDLINMSLEDSTVGFF 343
           D A     H  +DLIN+SLE+   G F
Sbjct: 353 DAAP----HAHEDLINISLENG-AGLF 374

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363806964|ref|NP_001242312.1| uncharacterized protein LOC100807020 [Glycine max] gi|255639323|gb|ACU19959.1| unknown [Glycine max]

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 220/344 (63%), Positives = 248/344 (72%), Gaps = 26/344 (7%)

Query: 1   MGRPPCCDKIGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNY 60
           MGRPPCCDKIG+KKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGL+RCSKSCRLRWTNY
Sbjct: 1   MGRPPCCDKIGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLMRCSKSCRLRWTNY 60

Query: 61  LRPGIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQ 120
           LRPGIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKK++
Sbjct: 61  LRPGIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKMR 120

Query: 121 TGSDGGQNNQDGFSSTSQQASNKGQWERRLQTDIHMAKQALCEALSLDKTSPTSPANLLL 180
           +G D   NN D  +S + Q   KGQWERRLQTDIHMAKQALCEALSLDK +   P   L 
Sbjct: 121 SGGDDDDNNDDKLNSCNSQI--KGQWERRLQTDIHMAKQALCEALSLDKPTQIFPETKL- 177

Query: 181 SPDQSNLKPMSSTTYNNTP-YASNAENISRLLQNWMKNPPKISETTQDSFTNTAYASAAG 239
            P  S+  P  +TT N T  YAS+ ENI++LL+NWMK  P I+  T+    N     A G
Sbjct: 178 -PSTSSHNP--TTTPNQTSLYASSTENIAKLLENWMKKSPNITTITETKPFNINNMVATG 234

Query: 240 SGSNISSEGALSATTPEGFDSLFSFNSSNSDASQSETTANLTSETSLFQDESKPKLDSRH 299
           S S+  ++  ++ T     DSL+SFNS  S   QSE   NL         ESKP+     
Sbjct: 235 SSSSEGTQSTITCTQDHALDSLWSFNSERS--CQSEENTNL--------GESKPQ----- 279

Query: 300 HHHHQVPLTLLEKWLFDDVAAAHQGHDDDDLINMSLEDSTVGFF 343
           +   QVPL LLE WL DD A       ++DL+NMSLE+ST G F
Sbjct: 280 YQEAQVPLMLLENWLLDDAAP----QCNEDLMNMSLEESTEGLF 319

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457423|ref|XP_002284926.1| PREDICTED: myb-related protein 306 [Vitis vinifera]

 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 231/343 (67%), Positives = 258/343 (75%), Gaps = 37/343 (10%)

Query: 1   MGRPPCCDKIGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNY 60
           MGRPPCCDKIGVKKGPWTPEEDIILVSYIQEHGPGNWR+VPT+TGLLRCSKSCRLRWTNY
Sbjct: 1   MGRPPCCDKIGVKKGPWTPEEDIILVSYIQEHGPGNWRAVPTSTGLLRCSKSCRLRWTNY 60

Query: 61  LRPGIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQ 120
           LRPGIKRGNFTD EEK IIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKK  
Sbjct: 61  LRPGIKRGNFTDQEEKTIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKFP 120

Query: 121 TGSDGGQNNQDGFSSTSQQASNKGQWERRLQTDIHMAKQALCEALSLDKTSPTSPANLLL 180
           TG D   +NQDGFS +      KGQWERRLQTDIHMAKQALCEALS+D TS + P     
Sbjct: 121 TGVD--DHNQDGFSIS------KGQWERRLQTDIHMAKQALCEALSID-TSSSLPDLKSS 171

Query: 181 SPDQSNLKPMSSTTYNNTPYASNAENISRLLQNWMKNPPKISETTQDSFTNTAYASAAGS 240
           +    N +P+ ++T     YAS+AENI++LL+ WM+N PK + T           S A  
Sbjct: 172 NGYNPNTRPVQAST-----YASSAENIAKLLEGWMRNSPKSTRTN----------SEATQ 216

Query: 241 GSNISSEGALSATTPEGFDSLFSFNSSNSDASQSET-TANLTSETSLFQDESKPKLDSRH 299
            S  SSEG   ATTP+  DSLFSFNSSNSD S S   TAN T ET LFQDESKP L++  
Sbjct: 217 NSKNSSEG---ATTPDALDSLFSFNSSNSDLSLSNDETANFTPETILFQDESKPNLET-- 271

Query: 300 HHHHQVPLTLLEKWLFDDVAAAHQGHDDDDLINMSLEDSTVGF 342
               QVPLT++EKWLFD+ AA  +    +DLI+MSLED+   F
Sbjct: 272 ----QVPLTMIEKWLFDEGAATQE---QEDLIDMSLEDTAQLF 307

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|117957143|gb|ABK59040.1| R2R3 Myb30 transcription factor [Vitis vinifera]

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 230/343 (67%), Positives = 258/343 (75%), Gaps = 37/343 (10%)

Query: 1   MGRPPCCDKIGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNY 60
           MGRPPCCDKIGVKKGPWTPEEDIILVSYIQ+HGPGNWR+VPT+TGLLRCSKSCRLRWTNY
Sbjct: 1   MGRPPCCDKIGVKKGPWTPEEDIILVSYIQDHGPGNWRAVPTSTGLLRCSKSCRLRWTNY 60

Query: 61  LRPGIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQ 120
           LRPGIKRGNFTD EEK IIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKK  
Sbjct: 61  LRPGIKRGNFTDQEEKTIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKFP 120

Query: 121 TGSDGGQNNQDGFSSTSQQASNKGQWERRLQTDIHMAKQALCEALSLDKTSPTSPANLLL 180
           TG D   +NQDGFS +      KGQWERRLQTDIHMAKQALCEALS+D TS + P     
Sbjct: 121 TGVD--DHNQDGFSIS------KGQWERRLQTDIHMAKQALCEALSID-TSSSLPDLKSS 171

Query: 181 SPDQSNLKPMSSTTYNNTPYASNAENISRLLQNWMKNPPKISETTQDSFTNTAYASAAGS 240
           +    N +P+ ++T     YAS+AENI++LL+ WM+N PK + T           S A  
Sbjct: 172 NGYNPNTRPVQAST-----YASSAENIAKLLEGWMRNSPKSTRTN----------SEATQ 216

Query: 241 GSNISSEGALSATTPEGFDSLFSFNSSNSDASQSET-TANLTSETSLFQDESKPKLDSRH 299
            S  SSEG   ATTP+  DSLFSFNSSNSD S S   TAN T ET LFQDESKP L++  
Sbjct: 217 NSKNSSEG---ATTPDALDSLFSFNSSNSDLSLSNDETANFTPETILFQDESKPNLET-- 271

Query: 300 HHHHQVPLTLLEKWLFDDVAAAHQGHDDDDLINMSLEDSTVGF 342
               QVPLT++EKWLFD+ AA  +    +DLI+MSLED+   F
Sbjct: 272 ----QVPLTMIEKWLFDEGAATQE---QEDLIDMSLEDTAQLF 307

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516796|ref|XP_003527079.1| PREDICTED: myb-related protein 306-like [Glycine max]

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 214/349 (61%), Positives = 247/349 (70%), Gaps = 22/349 (6%)

Query: 1   MGRPPCCDKIGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNY 60
           MGRPPCCDKIG+KKGPWTPEEDIILVSYIQEHGPGNWRSVP+NTGL+RCSKSCRLRWTNY
Sbjct: 1   MGRPPCCDKIGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPSNTGLMRCSKSCRLRWTNY 60

Query: 61  LRPGIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQ 120
           LRPGIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKK+Q
Sbjct: 61  LRPGIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKMQ 120

Query: 121 TGSDGGQNNQDGFSSTSQQASNKGQWERRLQTDIHMAKQALCEALSLDKTSPTSP-ANLL 179
            G     +N D  S++S  +  KGQWERRLQTDIHMAKQALCEALSLDK +   P   L 
Sbjct: 121 IGGGSDDDNNDDKSNSSNNSQIKGQWERRLQTDIHMAKQALCEALSLDKPTQIFPETKLP 180

Query: 180 LSPDQSNLKPMSSTTYNNTPYASNAENISRLLQNWMKNPPKISETTQDS-----FTNTAY 234
            +    +    ++     + YAS+ ENI+RLL+NWMK  P ++ TT  +     F+N   
Sbjct: 181 STSSHHHPTTTTTPNQTTSLYASSTENIARLLENWMKKSPNMTTTTTTTMETKPFSNNNM 240

Query: 235 ASAAGSGSNISSEGALSATTPEGFDSLFSFNSSNSDASQSETTANLTSETSLFQDESKPK 294
               GS S+  ++  ++ T     DSL+SFNS  S  SQSE   NL         ESKP+
Sbjct: 241 VITTGSSSSEGTQSTITCTQEYALDSLWSFNSERS--SQSEENTNL--------GESKPQ 290

Query: 295 LDSRHHHHHQVPLTLLEKWLFDDVAAAHQGHDDDDLINMSLEDSTVGFF 343
              +     QVPL LLE WLFDD A       ++DL+NMSLE+ST G F
Sbjct: 291 Y--QEPQETQVPLMLLENWLFDDAAP----QCNEDLMNMSLEESTEGLF 333

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357458775|ref|XP_003599668.1| R2R3-MYB transcription factor [Medicago truncatula] gi|355488716|gb|AES69919.1| R2R3-MYB transcription factor [Medicago truncatula]

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 203/347 (58%), Positives = 237/347 (68%), Gaps = 41/347 (11%)

Query: 1   MGRPPCCDKIGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNY 60
           M RPPCC+KIGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPT TGL+RCSKSCRLRWTNY
Sbjct: 1   MVRPPCCEKIGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTTTGLMRCSKSCRLRWTNY 60

Query: 61  LRPGIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQ 120
           LRPGIKRGNF DHEEKMIIHLQALLGNRWAAIASYLP+RTDNDIKNYWNTHL+KKLKK+ 
Sbjct: 61  LRPGIKRGNFNDHEEKMIIHLQALLGNRWAAIASYLPERTDNDIKNYWNTHLRKKLKKIN 120

Query: 121 TGSDGGQNNQDGFSSTSQQASNKGQWERRLQTDIHMAKQALCEALSLDKTSPTSPANLLL 180
              D  +  ++           KGQWERRLQTDIHMAKQALCEALSLDK +P      +L
Sbjct: 121 QTGDENEVEENSIPQV------KGQWERRLQTDIHMAKQALCEALSLDKPTP------IL 168

Query: 181 SPDQSNLKPMSSTTYNNTPYASNAENISRLLQNWMKNPPKISETTQDSFTNTAYASAAGS 240
           + +Q+            +PYASN ENI+RLL+ WMK P    ETT    +  +     GS
Sbjct: 169 AENQT------------SPYASNTENIARLLEKWMKKPENSVETTN---SGNSIMVVTGS 213

Query: 241 GSNISSEGALSATTP-EGFDSLFSFNSSNSDASQS---ETTANLTSETSLFQDESKPKLD 296
           GS    +  ++     + FDSL SFNS NSD SQS   E    L  ++  FQ +SKP   
Sbjct: 214 GSREGGQNTIACKQKDQAFDSLVSFNSLNSDCSQSVSVEEKNFLAMDSCFFQYQSKP--- 270

Query: 297 SRHHHHHQVPLTLLEKWLFDDVAAAHQGHDDDDLINMSLEDSTVGFF 343
              +   Q PL  +E W FDD AA      ++DL+N+S+E++T G F
Sbjct: 271 ---NQETQDPLMFMENWPFDDEAA----QCNEDLMNVSMEENTPGLF 310

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140977|ref|XP_002323853.1| predicted protein [Populus trichocarpa] gi|222866855|gb|EEF03986.1| predicted protein [Populus trichocarpa]

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 211/337 (62%), Positives = 246/337 (72%), Gaps = 39/337 (11%)

Query: 1   MGRPPCCDKIGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNY 60
           MGRPPCCDKIGVKKGPWTPEEDIILVSYIQEHGPGNWR+VPT+TGLLRCSKSCRLRWTNY
Sbjct: 1   MGRPPCCDKIGVKKGPWTPEEDIILVSYIQEHGPGNWRAVPTSTGLLRCSKSCRLRWTNY 60

Query: 61  LRPGIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQ 120
           LRPGIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKN+WNTHLKKKL+KLQ
Sbjct: 61  LRPGIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNFWNTHLKKKLRKLQ 120

Query: 121 TGSDGGQNNQDGFSSTSQQASNKGQWERRLQTDIHMAKQALCEALSLDKTSPTSPANLL- 179
            G +G   ++DG SST  Q  ++GQWERRLQTDI+MA+QALCEAL     SP  P++LL 
Sbjct: 121 AGQEG--QSRDGLSSTGSQQISRGQWERRLQTDINMARQALCEAL-----SPGKPSSLLT 173

Query: 180 -LSPDQSNLKPMSSTTYNNTPYASNAENISRLLQNWMKNPPKIS---ETTQDSFTNTAYA 235
            L P     KP +        YAS+ ENISRLL+ WM + PK S    TTQ+SF +TA A
Sbjct: 174 GLKPSCGYEKPATEPI-----YASSTENISRLLKGWMISGPKQSLKNSTTQNSFIDTAGA 228

Query: 236 SAAGSGSNISSEGALSATTPEG------FDSLFSFNSSNSDASQSETTANLTSETSLFQD 289
            +      +SSEG        G      F+SL  F   + D+S S+ + +++ +T LFQD
Sbjct: 229 DS------LSSEGTPDKADKNGTGLSQAFESL--FGFDSFDSSNSDFSQSMSPDTGLFQD 280

Query: 290 ESKPKLDSRHHHHHQVPLTLLEKWLFDDVAAAHQGHD 326
           ESKP      +   QVPL+L+E+WLFD+   A QG D
Sbjct: 281 ESKP------NSSAQVPLSLIERWLFDE--GAMQGKD 309

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|75107027|sp|P81392.1|MYB06_ANTMA RecName: Full=Myb-related protein 306 gi|256828|gb|AAB23528.1| Myb oncoprotein homolog {clone 306} [Antirrhinum majus=snapdragons, J1:522, flowers, Peptide, 316 aa]

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 210/337 (62%), Positives = 246/337 (72%), Gaps = 31/337 (9%)

Query: 1   MGRPPCCDKIGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNY 60
           MGRPPCCDKIGVKKGPWTPEEDIILVSYIQEHGPGNWR++P+NTGLLRCSKSCRLRWTNY
Sbjct: 1   MGRPPCCDKIGVKKGPWTPEEDIILVSYIQEHGPGNWRAIPSNTGLLRCSKSCRLRWTNY 60

Query: 61  LRPGIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQ 120
           LRPGIKRG+FT+HEEKMIIHLQALLGNRWAAIASYLP RTDNDIKNYWNTHLKKKL+KLQ
Sbjct: 61  LRPGIKRGDFTEHEEKMIIHLQALLGNRWAAIASYLPHRTDNDIKNYWNTHLKKKLEKLQ 120

Query: 121 TGSDGGQNNQDG-FSSTSQQASNKGQWERRLQTDIHMAKQALCEALSLDKTSPTSPANLL 179
           +  +G    QDG  S  S ++ +KGQWERRLQTDIHMAKQALC+ALSLDKTS ++    L
Sbjct: 121 SPENG--KCQDGNSSVDSDKSVSKGQWERRLQTDIHMAKQALCDALSLDKTSSSTDDPKL 178

Query: 180 LSPDQSNLKPMSSTTYNNTPYASNAENISRLLQNWMKNPPKISETT------QDSFTNTA 233
            +   +  +P  ++TY      S+AENI+RLL+NW K  P  + +T      + + T+  
Sbjct: 179 STVQTTQPRPFQASTY------SSAENIARLLENWKKKSPVNASSTSQAGSSESTTTSFN 232

Query: 234 YASAAGSGSNISSEGALSATTPEGFDSLFSFNSSNSDASQSETTANLTSETSL--FQDES 291
           Y S   S S+  SEGA+S        +  SFNSSNSD  +    A   + T+   FQDES
Sbjct: 233 YPSVCLSTSS-PSEGAIST-------NFISFNSSNSDILEDHDQAKFEAATNGVNFQDES 284

Query: 292 KPKLDSRHHHHHQVPLTLLEKWLFDDVAAAHQGHDDD 328
           KP LD      +Q+PL+LLEKWL DD AA  QG D D
Sbjct: 285 KPILD------NQMPLSLLEKWLLDDSAAVAQGQDVD 315

Source: Antirrhinum majus

Species: Antirrhinum majus

Genus: Antirrhinum

Family: Plantaginaceae

Order: Lamiales

Class: N/A

Phylum: Streptophyta

>gi|225452821|ref|XP_002283575.1| PREDICTED: myb-related protein 306 isoform 1 [Vitis vinifera]

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 213/346 (61%), Positives = 253/346 (73%), Gaps = 23/346 (6%)

Query: 1   MGRPPCCDKIGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNY 60
           MGRPPCCDKIGVKKGPWTPEEDIILVSYIQEHGPGNWR+VPTNTGLLRCSKSCRLRWTNY
Sbjct: 1   MGRPPCCDKIGVKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNY 60

Query: 61  LRPGIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQ 120
           LRPGIKRGNFTDHEE+MIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQ
Sbjct: 61  LRPGIKRGNFTDHEERMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQ 120

Query: 121 TGSDGGQNNQDGFSSTSQQASNKGQWERRLQTDIHMAKQALCEALSLDKTSPTSPANLLL 180
           TGS    +++D   S + Q+ ++GQWERRLQTDIHMAKQAL EALSL+K   +S      
Sbjct: 121 TGSSSDGHSRD--VSLASQSISRGQWERRLQTDIHMAKQALHEALSLEKPHSSSDQLNPT 178

Query: 181 SPDQSNLKPMSSTTYNNTPYASNAENISRLLQNWMKNPPK----ISETTQDSFTNTAYAS 236
           +  Q+  +P  +++     YAS+ ENI+RLL+ WM+N PK     S TTQ+SF NTA   
Sbjct: 179 NGYQTCTRPGQASS-----YASSTENIARLLEGWMRNSPKQARASSATTQNSFINTAGTD 233

Query: 237 AAGSGSNISSEGALSATTPEGFDSLFSFNSSNSDASQSETTANLTSETSLFQDESKPKLD 296
           +  S    S+         E ++ LF F+S   D+S SE + + + E S FQ+ESKP L 
Sbjct: 234 STSSEGTPSAANNEDIELTEAYEMLFGFDS--LDSSNSEISQSKSPEASFFQEESKPDLS 291

Query: 297 SRHHHHHQVPLTLLEKWLFDDVAAAHQGHDDDDLINMSLEDSTVGF 342
                  QVPL+ LEKWLF++  A  QG   +DL ++SL++S   F
Sbjct: 292 D------QVPLSFLEKWLFEEGGA--QGK--EDLTDISLDESPDFF 327

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	343
TAIR|locus:2019185	330	MYB31 "myb domain protein 31"	0.903	0.939	0.521	3.6e-82
TAIR|locus:2090764	323	MYB30 "myb domain protein 30"	0.670	0.712	0.624	8.4e-79
TAIR|locus:2079182	333	MYB94 "myb domain protein 94"	0.927	0.954	0.518	3e-78
TAIR|locus:2154119	352	MYB96 "myb domain protein 96"	0.865	0.843	0.526	7.1e-77
TAIR|locus:2025565	280	MYB60 "myb domain protein 60"	0.323	0.396	0.954	6e-71
TAIR|locus:2150891	326	MYB16 "myb domain protein 16"	0.460	0.484	0.562	1.3e-49
TAIR|locus:2102152	388	MYB106 "myb domain protein 106	0.577	0.510	0.471	1.8e-46
TAIR|locus:2141231	350	MYB102 "MYB-like 102" [Arabido	0.323	0.317	0.684	2.9e-44
TAIR|locus:2115708	324	MYB74 "myb domain protein 74"	0.323	0.342	0.678	2.9e-44
TAIR|locus:2038520	246	MYB13 "myb domain protein 13"	0.594	0.829	0.467	3.1e-44

TAIR|locus:2019185 MYB31 "myb domain protein 31" [Arabidopsis thaliana (taxid:3702)]

 Score = 824 (295.1 bits), Expect = 3.6e-82, P = 3.6e-82
 Identities = 185/355 (52%), Positives = 221/355 (62%)

Query:     1 MGRPPCCDKIGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNY 60
             MGRPPCC+KI VKKGPWTPEEDIILVSYIQ+HGPGNWRSVP NTGLLRCSKSCRLRWTNY
Sbjct:     1 MGRPPCCEKIEVKKGPWTPEEDIILVSYIQQHGPGNWRSVPANTGLLRCSKSCRLRWTNY 60

Query:    61 LRPGIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHXXXXXXXX- 119
             LRPGIKRGNFT  EEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTH         
Sbjct:    61 LRPGIKRGNFTQPEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLVMMK 120

Query:   120 -QTG----------SD-GGQNNQDGFSSTSQQASNKGQWERRLQTDIHMAKQALCEALSL 167
              Q G          +D    NN +   + +++ +NKGQWE++LQTDI+MAKQAL +ALSL
Sbjct:   121 FQNGIINENKTNLATDISSCNNNNNGCNHNKRTTNKGQWEKKLQTDINMAKQALFQALSL 180

Query:   168 DKTSPTSPANLLLSPDQSNLKPMSSTTYNNTPYASNAENISRLLQNWMKNPPKISETTQD 227
             D+  P+S    L+ PD  + KP   +T   T YAS+ +NIS+LLQNW  +    S+    
Sbjct:   181 DQ--PSS----LIPPDPDSPKPHHHST---TTYASSTDNISKLLQNWTSSSS--SKPNTS 229

Query:   228 SFTNTXXXXXXXXXXXXXXXXXLSATTPEGXXXXXXXXXXXXXXXXXETTANLTSETSLF 287
             S +N                   S+    G                 +   NL SETS+F
Sbjct:   230 SVSNNRS----------------SSPGEGGLFDHHSLFSSNSESGSVDEKLNLMSETSMF 273

Query:   288 QDESKPKLD-----SRHHHHHQVPLTLLEKWLFDDVAAAHQGHDDDDLINMSLED 337
             + ESKP +D     +      Q  L+L+EKWLFDD          +DLI++SLE+
Sbjct:   274 KGESKPDIDMEATPTTTTTDDQGSLSLIEKWLFDDQGLVQCDDSQEDLIDVSLEE 328

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0010200 "response to chitin" evidence=IEP

TAIR|locus:2090764 MYB30 "myb domain protein 30" [Arabidopsis thaliana (taxid:3702)]

 Score = 764 (274.0 bits), Expect = 8.4e-79, Sum P(2) = 8.4e-79
 Identities = 153/245 (62%), Positives = 178/245 (72%)

Query:     1 MGRPPCCDKIGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNY 60
             M RPPCCDK GVKKGPWTPEEDIILV+YIQEHGPGNWR+VPTNTGLLRCSKSCRLRWTNY
Sbjct:     1 MVRPPCCDKGGVKKGPWTPEEDIILVTYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNY 60

Query:    61 LRPGIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHXXXXXXXXQ 120
             LRPGIKRGNFT+HEEKMI+HLQALLGNRWAAIASYLPQRTDNDIKNYWNTH         
Sbjct:    61 LRPGIKRGNFTEHEEKMIVHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLNKVN 120

Query:   121 TGS----DGGQNNQDGFSSTSQQASN--KGQWERRLQTDIHMAKQALCEALSLDKTSP-- 172
               S    D    +    SS++   SN  +GQWERRLQTDIH+AK+AL EALS    +P  
Sbjct:   121 QDSHQELDRSSLSSSPSSSSANSNSNISRGQWERRLQTDIHLAKKALSEALS-PAVAPII 179

Query:   173 TSPANLLLSPDQSNLKPMSSTTY-----NNTPYASNAENISRLLQNWMKNPPKISETTQD 227
             TS      S  +S     S++ +      +T YAS+ ENI++LL+ W+KN PK ++ + D
Sbjct:   180 TSTVTTTSSSAESRRSTSSASGFLRTQETSTTYASSTENIAKLLKGWVKNSPK-TQNSAD 238

Query:   228 SFTNT 232
                +T
Sbjct:   239 QIAST 243

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009617 "response to bacterium" evidence=IEP

GO:0009626 "plant-type hypersensitive response" evidence=IEP

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009733 "response to auxin stimulus" evidence=IEP

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0042761 "very long-chain fatty acid biosynthetic process" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2079182 MYB94 "myb domain protein 94" [Arabidopsis thaliana (taxid:3702)]

 Score = 787 (282.1 bits), Expect = 3.0e-78, P = 3.0e-78
 Identities = 185/357 (51%), Positives = 213/357 (59%)

Query:     1 MGRPPCCDKIGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNY 60
             MGRPPCCDKIGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPT+TGL RCSKSCRLRWTNY
Sbjct:     1 MGRPPCCDKIGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTHTGLRRCSKSCRLRWTNY 60

Query:    61 LRPGIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHXXXXXXXXQ 120
             LRPGIKRGNFT+HEEKMI+HLQALLGNRWAAIASYLP+RTDNDIKNYWNTH         
Sbjct:    61 LRPGIKRGNFTEHEEKMILHLQALLGNRWAAIASYLPERTDNDIKNYWNTHLKKKLKKMN 120

Query:   121 TGSDG----GQNNQDGFS-----STSQQASN--KGQWERRLQTDIHMAKQALCEALSLDK 169
                D     G +N+D FS     +TS Q+SN  KGQWERRLQTDI+MAKQALC+ALS+DK
Sbjct:   121 DSCDSTINNGLDNKD-FSISNKNTTSHQSSNSSKGQWERRLQTDINMAKQALCDALSIDK 179

Query:   170 TSPTSPANLLLSPD--QSNLKPMSSTTYNNTPYASNAENISRLLQNWMKNPPKISETTQD 227
               P +P N  + PD         SSTT   T   +     S +  +  +N  ++ +    
Sbjct:   180 --PQNPTNFSI-PDLGYGPSSSSSSTTTTTTTTRNTNPYPSGVYASSAENIARLLQNFMK 236

Query:   228 SFTNTXXXXXXXXXXXXXXXXXLSATTPEGXXXXXXXXXXXXXXXXXETTANLTSETSLF 287
                 T                  S +T EG                     +L S  S+ 
Sbjct:   237 DTPKTSVPLPVAATEMAITTAASSPSTTEGDGEGIDH--------------SLFSFNSID 282

Query:   288 QDESKPKLDSRHHHH--HQVPLTLLEKWLFDDVAAAHQGHDDDDLINMSLEDSTVGF 342
             + E KPKL     +    Q  L+L EKWLFD+     Q HD   + NMSLE   V F
Sbjct:   283 EAEEKPKLIDHDINGLITQGSLSLFEKWLFDE-----QSHDMI-INNMSLEGQEVLF 333

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009651 "response to salt stress" evidence=IEP

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009733 "response to auxin stimulus" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0080167 "response to karrikin" evidence=IEP

TAIR|locus:2154119 MYB96 "myb domain protein 96" [Arabidopsis thaliana (taxid:3702)]

 Score = 774 (277.5 bits), Expect = 7.1e-77, P = 7.1e-77
 Identities = 169/321 (52%), Positives = 202/321 (62%)

Query:     1 MGRPPCCDKIGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNY 60
             MGRPPCC+KIGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPT+TGL RCSKSCRLRWTNY
Sbjct:     1 MGRPPCCEKIGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTHTGLRRCSKSCRLRWTNY 60

Query:    61 LRPGIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHXXXXXXXXQ 120
             LRPGIKRGNFT+HEEK I+HLQALLGNRWAAIASYLP+RTDNDIKNYWNTH         
Sbjct:    61 LRPGIKRGNFTEHEEKTIVHLQALLGNRWAAIASYLPERTDNDIKNYWNTHLKKKLKKI- 119

Query:   121 TGSDGGQNNQDGFSST---SQ---QASNKGQWERRLQTDIHMAKQALCEALSLDKTSPT- 173
               ++ G+ + DG SS+   SQ   Q++NKGQWERRLQTDI+MAKQALCEALSLDK S T 
Sbjct:   120 --NESGEEDNDGVSSSNTSSQKNHQSTNKGQWERRLQTDINMAKQALCEALSLDKPSSTL 177

Query:   174 SPANLLLSP--DQSNLKPMSSTTYNNT--PYASNAENISRLLQNWMKNP-PK-ISETTQD 227
             S ++ L +P   Q N++  SS   +    P +S++   +    N   NP P  +  ++ +
Sbjct:   178 SSSSSLPTPVITQQNIRNFSSALLDRCYDPSSSSSSTTTTTTSN-TTNPYPSGVYASSAE 236

Query:   228 SFTNTXXXXXXXX--XXXXXXXXXLSATTPEGXXXXXXXXX----XXXXXXXXETTANLT 281
             +                       +S T P                       + T NLT
Sbjct:   237 NIARLLQDFMKDTPKALTLSSSSPVSETGPLTAAVSEEGGEGFEQSFFSFNSMDETQNLT 296

Query:   282 SETSLFQDES-KPKLDSRHHH 301
              ETS F D+  KP++     H
Sbjct:   297 QETSFFHDQVIKPEITMDQDH 317

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009651 "response to salt stress" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009414 "response to water deprivation" evidence=IMP

GO:0010468 "regulation of gene expression" evidence=IMP

TAIR|locus:2025565 MYB60 "myb domain protein 60" [Arabidopsis thaliana (taxid:3702)]

 Score = 609 (219.4 bits), Expect = 6.0e-71, Sum P(3) = 6.0e-71
 Identities = 106/111 (95%), Positives = 109/111 (98%)

Query:     1 MGRPPCCDKIGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNY 60
             MGRPPCCDKIG+KKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNY
Sbjct:     1 MGRPPCCDKIGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNY 60

Query:    61 LRPGIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTH 111
             LRPGIKRGNFT HEE MIIHLQALLGN+WA+IASYLPQRTDNDIKNYWNTH
Sbjct:    61 LRPGIKRGNFTPHEEGMIIHLQALLGNKWASIASYLPQRTDNDIKNYWNTH 111

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;TAS

GO:0009414 "response to water deprivation" evidence=IEP

GO:0009416 "response to light stimulus" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

GO:0010118 "stomatal movement" evidence=IMP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2150891 MYB16 "myb domain protein 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 481 (174.4 bits), Expect = 1.3e-49, Sum P(2) = 1.3e-49
 Identities = 95/169 (56%), Positives = 119/169 (70%)

Query:     1 MGRPPCCDKIGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNY 60
             MGR PCCDK+G+KKGPWTPEED  L++YI+EHG G+WRS+P   GL RC KSCRLRWTNY
Sbjct:     1 MGRSPCCDKLGLKKGPWTPEEDQKLLAYIEEHGHGSWRSLPEKAGLHRCGKSCRLRWTNY 60

Query:    61 LRPGIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHXXXXXXXXQ 120
             LRP IKRG F   EE+ II L ALLGNRW+AIA++LP+RTDN+IKNYWNTH        +
Sbjct:    61 LRPDIKRGKFNLQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLV--K 118

Query:   121 TGSDGGQN---NQDGFSST--SQQA---SNKGQWER-RLQTDIHMAKQA 160
              G D   +   N+   SS   S+ A   S+  QWE  RL+ +  +A+++
Sbjct:   119 MGIDPVTHKPKNETPLSSLGLSKNAAILSHTAQWESARLEAEARLARES 167

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009651 "response to salt stress" evidence=IEP

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009733 "response to auxin stimulus" evidence=IEP

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0000902 "cell morphogenesis" evidence=IMP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2102152 MYB106 "myb domain protein 106" [Arabidopsis thaliana (taxid:3702)]

 Score = 487 (176.5 bits), Expect = 1.8e-46, P = 1.8e-46
 Identities = 98/208 (47%), Positives = 128/208 (61%)

Query:     5 PCCDKIGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPG 64
             PCCDK G+KKGPWTPEED  L++YI+EHG G+WRS+P   GL RC KSCRLRWTNYLRP 
Sbjct:    48 PCCDKAGLKKGPWTPEEDQKLLAYIEEHGHGSWRSLPEKAGLQRCGKSCRLRWTNYLRPD 107

Query:    65 IKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHXXXXXXXXQTGSD 124
             IKRG FT  EE+ II L ALLGNRW+AIA++LP+RTDN+IKNYWNTH             
Sbjct:   108 IKRGKFTVQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLIKMGIDPV 167

Query:   125 GGQNNQDGFSSTSQQASNKG------QWER-RLQTDIHMAKQALCEALSLDKTSPTSPAN 177
               ++  +  SS++ Q+ N        QWE  RL+ +  +A+++  + L L      +  N
Sbjct:   168 THKHKNETLSSSTGQSKNAATLSHMAQWESARLEAEARLARES--KLLHLQHYQNNNNLN 225

Query:   178 LLLSPDQSNLKPMSSTTYNNTPYASNAE 205
                +P Q      +ST +   P   N +
Sbjct:   226 KSAAPQQHCFTQKTSTNWTK-PNQGNGD 252

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0010091 "trichome branching" evidence=IMP

GO:0010093 "specification of floral organ identity" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

TAIR|locus:2141231 MYB102 "MYB-like 102" [Arabidopsis thaliana (taxid:3702)]

 Score = 438 (159.2 bits), Expect = 2.9e-44, Sum P(2) = 2.9e-44
 Identities = 76/111 (68%), Positives = 89/111 (80%)

Query:     1 MGRPPCCDKIGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNY 60
             M R PCC+K G+KKGPWT EED  LV YIQ+HG GNWR++P N GL RC KSCRLRWTNY
Sbjct:     1 MARSPCCEKNGLKKGPWTSEEDQKLVDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNY 60

Query:    61 LRPGIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTH 111
             LRP IKRG F+  EE+ II L + LGN+W+AIA+ LP RTDN+IKN+WNTH
Sbjct:    61 LRPDIKRGRFSFEEEETIIQLHSFLGNKWSAIAARLPGRTDNEIKNFWNTH 111

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0006970 "response to osmotic stress" evidence=IEP

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009651 "response to salt stress" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0007165 "signal transduction" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0015824 "proline transport" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2115708 MYB74 "myb domain protein 74" [Arabidopsis thaliana (taxid:3702)]

 Score = 437 (158.9 bits), Expect = 2.9e-44, Sum P(2) = 2.9e-44
 Identities = 76/112 (67%), Positives = 90/112 (80%)

Query:     1 MGRPPCCDKI-GVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTN 59
             MGR PCC+K  G+KKGPWTPEED  L+ YI  HG GNWR++P N GL RC KSCRLRWTN
Sbjct:     1 MGRSPCCEKKNGLKKGPWTPEEDQKLIDYINIHGYGNWRTLPKNAGLQRCGKSCRLRWTN 60

Query:    60 YLRPGIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTH 111
             YLRP IKRG F+  EE+ II L +++GN+W+AIA+ LP RTDN+IKNYWNTH
Sbjct:    61 YLRPDIKRGRFSFEEEETIIQLHSIMGNKWSAIAARLPGRTDNEIKNYWNTH 112

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA

GO:0009651 "response to salt stress" evidence=IEP

GO:0009723 "response to ethylene stimulus" evidence=IEP;RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP;RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2038520 MYB13 "myb domain protein 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 466 (169.1 bits), Expect = 3.1e-44, P = 3.1e-44
 Identities = 102/218 (46%), Positives = 131/218 (60%)

Query:     1 MGRPPCCDKIGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNY 60
             MGR PCC+KIG+KKGPW+ EED IL++YI  HG  NWR++P   GLLRC KSCRLRW NY
Sbjct:     1 MGRRPCCEKIGLKKGPWSAEEDRILINYISLHGHPNWRALPKLAGLLRCGKSCRLRWINY 60

Query:    61 LRPGIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHXXXXXXXXQ 120
             LRP IKRGNFT HEE  II L  LLGNRW+AIA+ LP RTDN+IKN W+TH        Q
Sbjct:    61 LRPDIKRGNFTPHEEDTIISLHQLLGNRWSAIAAKLPGRTDNEIKNVWHTHLKKRLHHSQ 120

Query:   121 TGSDGGQNNQDGF-SSTSQQASNKGQWERRLQTDIHMAKQALC---EALSLDKTSPTSPA 176
                   QNN++ F S+T+ +     Q +     DI  A   L    +  + +K S TS  
Sbjct:   121 D-----QNNKEDFVSTTAAEMPTSPQQQSSSSADIS-AITTLGNNNDISNSNKDSATSSE 174

Query:   177 NLLLSPDQSNLKPMSSTTYNNTPYASNAENISRLLQNW 214
             ++L   D+S     S     +   + N +N  + ++NW
Sbjct:   175 DVLAIIDESF---WSEVVLMDCDISGNEKN-EKKIENW 208

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009651 "response to salt stress" evidence=IEP

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P81392	MYB06_ANTMA	No assigned EC number	0.6231	0.8921	0.9683	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: MYB30 SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (307 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	343
PLN03212	249	PLN03212, PLN03212, Transcription repressor MYB5;	1e-50
PLN03091	459	PLN03091, PLN03091, hypothetical protein; Provisio	6e-45
COG5147	512	COG5147, REB1, Myb superfamily proteins, including	2e-17
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	6e-15
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	2e-13
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	6e-12
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	2e-11
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	8e-11
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	3e-10
pfam13921	59	pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do	3e-09
cd11660	50	cd11660, SANT_TRF, Telomere repeat binding factor-	0.001
pfam13921	59	pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do	0.002

>gnl|CDD|178751 PLN03212, PLN03212, Transcription repressor MYB5; Provisional

 Score =  168 bits (427), Expect = 1e-50
 Identities = 77/120 (64%), Positives = 92/120 (76%), Gaps = 2/120 (1%)

Query: 5   PCCDKIGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPG 64
           PCC K+G+K+GPWT EED ILVS+I++ G G WRS+P   GLLRC KSCRLRW NYLRP 
Sbjct: 16  PCCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPS 75

Query: 65  IKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQTGSD 124
           +KRG  T  EE +I+ L  LLGNRW+ IA  +P RTDN+IKNYWNTHL+KKL  L+ G D
Sbjct: 76  VKRGGITSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKL--LRQGID 133

Length = 249

>gnl|CDD|215570 PLN03091, PLN03091, hypothetical protein; Provisional

 Score =  159 bits (403), Expect = 6e-45
 Identities = 105/308 (34%), Positives = 146/308 (47%), Gaps = 42/308 (13%)

Query: 1   MGRPPCCDKIGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNY 60
           MGR  CC K  ++KG W+PEED  L+ +I ++G G W SVP   GL RC KSCRLRW NY
Sbjct: 1   MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINY 60

Query: 61  LRPGIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQ 120
           LRP +KRG F+  EE +II L A+LGNRW+ IA+ LP RTDN+IKN WN+ LKKKL+  Q
Sbjct: 61  LRPDLKRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLR--Q 118

Query: 121 TGSD-----------GGQNNQDGFSSTSQQASNKGQWERRLQTDIHMAKQALCEALSLDK 169
            G D            G++        S +AS+    E  L    +    A   AL   +
Sbjct: 119 RGIDPNTHKPLSEVENGEDKNPPTDDKSDKASSVVSNELNLLKADNSKPLA---ALQEKR 175

Query: 170 TSPTSPANLLLSPDQSNLKPMSSTTYNNTPYASNAENISRLLQNWMKNPPKISETTQDSF 229
           +S  SPA   L  + S+   ++++  NN               + +  P    +   D F
Sbjct: 176 SSSISPAGYQLEVESSSSSKINNSNNNNHS------------NSNLMTPTPNKDFFLDRF 223

Query: 230 TNTAYASAAGSGSNISSEGALSATTPEGFDSLFSFNSSNSDASQSETTANLTSETSLFQD 289
           T              S E + ++  P      F F   N  AS +  + N        Q+
Sbjct: 224 T-------------TSHESSTTSCRPSDLVGHFPFQQLNY-ASNARLSTNPNPTLWFSQN 269

Query: 290 ESKPKLDS 297
               +++S
Sbjct: 270 SKSFEMNS 277

Length = 459

>gnl|CDD|227476 COG5147, REB1, Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

 Score = 82.9 bits (205), Expect = 2e-17
 Identities = 31/107 (28%), Positives = 50/107 (46%), Gaps = 1/107 (0%)

Query: 12  VKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFT 71
            K G W   ED  L + +++ GP NW  V +        K    RW N+L P +K+ N++
Sbjct: 18  RKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLIS-STGKQSSNRWNNHLNPQLKKKNWS 76

Query: 72  DHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKK 118
           + E++ +I L   LG +W+ IA Y  +RT       +   L+     
Sbjct: 77  EEEDEQLIDLDKELGTQWSTIADYKDRRTAQQCVERYVNTLEDLSST 123

Length = 512

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 67.5 bits (166), Expect = 6e-15
 Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 14 KGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYL 61
          +GPWTPEED +L+  +++HG GNW  +  +    R    C+ RW NYL
Sbjct: 1  RGPWTPEEDELLIEAVKKHGNGNWSKIAKHLP-GRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 63.3 bits (155), Expect = 2e-13
 Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 67  RGNFTDHEEKMIIHLQALLGNR-WAAIASYLPQRTDNDIKNYWNTHL 112
           RG +T  E++++I      GN  W+ IA +LP RTDN  KN WN +L
Sbjct: 1   RGPWTPEEDELLIEAVKKHGNGNWSKIAKHLPGRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 59.5 bits (145), Expect = 6e-12
 Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 14 KGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRP 63
          KG WT EED +L+  ++++G  NW  +       R ++ CR RW N L+P
Sbjct: 1  KGEWTEEEDELLIELVKKYGKNNWEKIAKELP-GRTAEQCRERWRNLLKP 49

Length = 49

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 58.4 bits (142), Expect = 2e-11
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 67  RGNFTDHEEKMIIHLQALLG-NRWAAIASYLPQRTDNDIKNYWNTHLKK 114
           +G +T+ E++++I L    G N W  IA  LP RT    +  W   LK 
Sbjct: 1   KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWRNLLKP 49

Length = 49

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 56.0 bits (136), Expect = 8e-11
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 16 PWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYL 61
          PWT EED +L+  ++++G  NW  +       R  K CR RW N L
Sbjct: 1  PWTEEEDELLLEAVKKYGKNNWEKIAKELP-GRTPKQCRERWRNLL 45

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 54.5 bits (132), Expect = 3e-10
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 69  NFTDHEEKMIIHLQALLG-NRWAAIASYLPQRTDNDIKNYWNTHL 112
            +T+ E+++++      G N W  IA  LP RT    +  W   L
Sbjct: 1   PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL 45

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain

 Score = 52.3 bits (126), Expect = 3e-09
 Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 3/62 (4%)

Query: 17 WTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDHEEK 76
          WT EED  L+  ++++G  +W+ +    G  R   +CR RW   LRP   RG +T  E++
Sbjct: 1  WTEEEDEKLLKLVEKYG-NDWKQIAEELG--RTPSACRDRWRRKLRPKRSRGPWTKEEDQ 57

Query: 77 MI 78
           +
Sbjct: 58 RL 59

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 59

>gnl|CDD|212558 cd11660, SANT_TRF, Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family

 Score = 36.4 bits (85), Expect = 0.001
 Identities = 11/23 (47%), Positives = 15/23 (65%)

Query: 16 PWTPEEDIILVSYIQEHGPGNWR 38
           WT EED  LV  ++++G GNW 
Sbjct: 2  KWTDEEDEALVEGVEKYGVGNWA 24

Human telomere repeat binding factors, TRF1 and TRF2, function as part of the 6 component shelterin complex. TRF2 binds DNA and recruits RAP1 (via binding to the RAP1 protein c-terminal (RCT)) and TIN2 in the protection of telomeres from DNA repair machinery. Metazoan shelterin consists of 3 DNA binding proteins (TRF2, TRF1, and POT1) and 3 recruited proteins that bind to one or more of these DNA-binding proteins (RAP1, TIN2, TPP1). Schizosaccharomyces pombe TAZ1 is an orthlog and binds RAP1. Human TRF1 and TRF2 bind double-stranded DNA. hTRF2 consists of a basic N-terminus, a TRF homology domain, the RAP1 binding motif (RBM), the TIN2 binding motif (TBM) and a myb-like DNA binding domain, SANT, named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. Tandem copies of the domain bind telomeric DNA tandem repeats as part of the capping complex. The single myb-like domain of TRF-type proteins is similar to the tandem myb_like domains found in yeast RAP1. Length = 50

>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain

 Score = 35.8 bits (83), Expect = 0.002
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 70  FTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKK 118
           +T+ E++ ++ L    GN W  IA  L  RT +  ++ W   L+ K  +
Sbjct: 1   WTEEEDEKLLKLVEKYGNDWKQIAEELG-RTPSACRDRWRRKLRPKRSR 48

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 59

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	343
PLN03091	459	hypothetical protein; Provisional	100.0
PLN03212	249	Transcription repressor MYB5; Provisional	100.0
KOG0048	238	consensus Transcription factor, Myb superfamily [T	100.0
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.79
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.66
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.63
COG5147	512	REB1 Myb superfamily proteins, including transcrip	99.57
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	99.54
KOG0051	607	consensus RNA polymerase I termination factor, Myb	99.41
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.37
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.36
PLN03212	249	Transcription repressor MYB5; Provisional	99.28
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.27
KOG0048	238	consensus Transcription factor, Myb superfamily [T	99.23
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	99.19
PLN03091	459	hypothetical protein; Provisional	99.13
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	99.08
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	99.04
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	98.89
KOG0051	607	consensus RNA polymerase I termination factor, Myb	98.81
COG5147	512	REB1 Myb superfamily proteins, including transcrip	98.33
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	97.8
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	97.63
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	97.51
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	97.49
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	97.42
PF13325	199	MCRS_N: N-terminal region of micro-spherule protei	97.28
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	97.15
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	97.09
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	96.84
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	96.63
KOG1279	506	consensus Chromatin remodeling factor subunit and	96.63
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	96.6
KOG1279	506	consensus Chromatin remodeling factor subunit and	96.4
PRK13923	170	putative spore coat protein regulator protein YlbO	96.35
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	96.21
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	96.14
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	96.04
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	95.76
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	95.66
PLN03142	1033	Probable chromatin-remodeling complex ATPase chain	95.3
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	95.15
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	94.42
PRK13923	170	putative spore coat protein regulator protein YlbO	94.32
PF09111	118	SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain	93.65
KOG4282	345	consensus Transcription factor GT-2 and related pr	93.49
KOG2656	445	consensus DNA methyltransferase 1-associated prote	92.01
PF12776	96	Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain;	92.0
COG5118	507	BDP1 Transcription initiation factor TFIIIB, Bdp1	87.76
KOG1194	534	consensus Predicted DNA-binding protein, contains	86.17
PF08281	54	Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013	86.06

>PLN03091 hypothetical protein; Provisional

Probab=100.00  E-value=3.6e-37  Score=306.37  Aligned_cols=125  Identities=56%  Similarity=1.053  Sum_probs=120.0

Q ss_pred             CCCCCccCCCCCccCCCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhcccCCCccCCCChHHHHHHHH
Q 019307            1 MGRPPCCDKIGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDHEEKMIIH   80 (343)
Q Consensus         1 MGR~pccdK~~ikKG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~ikrg~WT~EED~~Ll~   80 (343)
                      |||++||+|+.++||+||+|||++|+++|.+||.++|..||+.++.+|+++|||+||.+||+|.+++++||+|||++|++
T Consensus         1 mgr~~Cc~KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLLe   80 (459)
T PLN03091          1 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIE   80 (459)
T ss_pred             CCCCccCcCCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999998778999999999999999999999999999999999


Q ss_pred             HHHHhCCcHHHHHhhCCCCChHHHHHHHHHHhHHHHhhhcCCCCC
Q 019307           81 LQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQTGSDG  125 (343)
Q Consensus        81 lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkkklkk~q~~~~~  125 (343)
                      ++++||++|..||++|||||+++||+||+.+|++++++.+..+..
T Consensus        81 L~k~~GnKWskIAk~LPGRTDnqIKNRWnslLKKklr~~~I~p~t  125 (459)
T PLN03091         81 LHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNT  125 (459)
T ss_pred             HHHHhCcchHHHHHhcCCCCHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence            999999999999999999999999999999999999877666543

>PLN03212 Transcription repressor MYB5; Provisional

Probab=100.00  E-value=6.6e-37  Score=286.28  Aligned_cols=123  Identities=60%  Similarity=1.184  Sum_probs=116.7

Q ss_pred             CCCccCCCCCccCCCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhcccCCCccCCCChHHHHHHHHHH
Q 019307            3 RPPCCDKIGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDHEEKMIIHLQ   82 (343)
Q Consensus         3 R~pccdK~~ikKG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~ikrg~WT~EED~~Ll~lv   82 (343)
                      |+|||+|+++++++||+|||++|+++|++||..+|..||+.++.+|+++|||+||.++|+|.+++++||+|||++|++++
T Consensus        14 ~~pcc~K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpWT~EED~lLlel~   93 (249)
T PLN03212         14 TTPCCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLH   93 (249)
T ss_pred             CCCCcccCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCCChHHHHHHHHHH
Confidence            68999999999999999999999999999999999999999866899999999999999999999999999999999999


Q ss_pred             HHhCCcHHHHHhhCCCCChHHHHHHHHHHhHHHHhhhcCCCCC
Q 019307           83 ALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQTGSDG  125 (343)
Q Consensus        83 ~~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkkklkk~q~~~~~  125 (343)
                      ..||++|+.||++|||||+++||+||+.++++++.+....+..
T Consensus        94 ~~~GnKWs~IAk~LpGRTDnqIKNRWns~LrK~l~r~~i~p~~  136 (249)
T PLN03212         94 RLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGIDPQT  136 (249)
T ss_pred             HhccccHHHHHhhcCCCCHHHHHHHHHHHHhHHHHhcCCCCCC
Confidence            9999999999999999999999999999999998876655433

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=100.00  E-value=1.1e-35  Score=278.00  Aligned_cols=109  Identities=61%  Similarity=1.078  Sum_probs=106.7

Q ss_pred             CccCCCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhcccCCCccCCCChHHHHHHHHHHHHhCCcHHH
Q 019307           12 VKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDHEEKMIIHLQALLGNRWAA   91 (343)
Q Consensus        12 ikKG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~ikrg~WT~EED~~Ll~lv~~~GnkWs~   91 (343)
                      +.||+||+|||++|+++|++||+++|..|++.+|++|++++||+||.|||+|++++|.||+|||++|++|+..+|++|+.
T Consensus         7 ~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~GNrWs~   86 (238)
T KOG0048|consen    7 LVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLGNRWSL   86 (238)
T ss_pred             ccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHCcHHHH
Confidence            45899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhCCCCChHHHHHHHHHHhHHHHhhhc
Q 019307           92 IASYLPQRTDNDIKNYWNTHLKKKLKKLQ  120 (343)
Q Consensus        92 IA~~LpgRT~~qcKnRW~~~Lkkklkk~q  120 (343)
                      ||++|||||+|+|||+|+..|++++.+++
T Consensus        87 IA~~LPGRTDNeIKN~Wnt~lkkkl~~~~  115 (238)
T KOG0048|consen   87 IAGRLPGRTDNEVKNHWNTHLKKKLLKMG  115 (238)
T ss_pred             HHhhCCCcCHHHHHHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999887

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.79  E-value=3.9e-19  Score=183.26  Aligned_cols=167  Identities=22%  Similarity=0.356  Sum_probs=122.8

Q ss_pred             CCCCCccCCCCCccCCCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhcccCCCccCCCChHHHHHHHH
Q 019307            1 MGRPPCCDKIGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDHEEKMIIH   80 (343)
Q Consensus         1 MGR~pccdK~~ikKG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~ikrg~WT~EED~~Ll~   80 (343)
                      +||..-.-.|++++|+||++||.+|+.+|.+||..+|-+|-..+| +|+..|||+||.|.|+...|.+.|+-.||+.||.
T Consensus       347 I~R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vP-nRSdsQcR~RY~nvL~~s~K~~rW~l~edeqL~~  425 (939)
T KOG0049|consen  347 ITRFSHTLDPSVKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVP-NRSDSQCRERYTNVLNRSAKVERWTLVEDEQLLY  425 (939)
T ss_pred             hhhheeccCccccCCCCCCHHHHHHHHHHHHhCccchhhHHHhcC-CccHHHHHHHHHHHHHHhhccCceeecchHHHHH
Confidence            366666677999999999999999999999999999999999999 9999999999999999999999999999999999


Q ss_pred             HHHHhC-CcHHHHHhhCCCCChHHHHHHHHHHhHHHHhhhcCCCCCCCCCCCCCCCccccccchhhhhhhhhhhHHHHHH
Q 019307           81 LQALLG-NRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQTGSDGGQNNQDGFSSTSQQASNKGQWERRLQTDIHMAKQ  159 (343)
Q Consensus        81 lv~~~G-nkWs~IA~~LpgRT~~qcKnRW~~~Lkkklkk~q~~~~~~~~~~~~~ss~ss~~~~~~qwe~rLqtdi~~ak~  159 (343)
                      +|.+|| ++|.+||..||.||..|.+.|=...+.-++.-.+....+......+..+.-........|-.++|- ....-.
T Consensus       426 ~V~~YG~g~WakcA~~Lp~~t~~q~~rrR~R~~~~k~rl~~~~~~~v~~~~sg~rS~eede~eq~dWv~a~Q~-p~e~~~  504 (939)
T KOG0049|consen  426 AVKVYGKGNWAKCAMLLPKKTSRQLRRRRLRLIAAKLRLAAGFCNAVDAMKSGRRSPEEDELEQEDWVEAEQI-PNELMK  504 (939)
T ss_pred             HHHHHccchHHHHHHHccccchhHHHHHHHHHHHHHHHHhcCCccccccccccCCCccccccchhhhHHhhhc-chhchh
Confidence            999999 789999999999999776655444444443322222111110111101111122334468887772 222234


Q ss_pred             HHHHHhccCC
Q 019307          160 ALCEALSLDK  169 (343)
Q Consensus       160 al~~als~~~  169 (343)
                      .+.+.+..+.
T Consensus       505 ~~~~~~an~n  514 (939)
T KOG0049|consen  505 EVYEKFANEN  514 (939)
T ss_pred             hhhhhhcccC
Confidence            5555555655

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.66  E-value=8.3e-17  Score=166.30  Aligned_cols=120  Identities=22%  Similarity=0.436  Sum_probs=109.1

Q ss_pred             CccCC-----CCCccCCCCHHHHHHHHHHHHHhCCC---CCceecccCCCCCChhhhhhhhhhcccCCCccCCCChHHHH
Q 019307            5 PCCDK-----IGVKKGPWTPEEDIILVSYIQEHGPG---NWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDHEEK   76 (343)
Q Consensus         5 pccdK-----~~ikKG~WT~EEDe~L~~lV~~~G~~---nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~ikrg~WT~EED~   76 (343)
                      +|..|     ..+++..||.|||.+|+.+|++...+   +|++|-..|+ +|+..|...||...|+|.+++|+||.+||.
T Consensus       291 QC~~kF~t~~~~L~ekeWsEEed~kL~alV~~~~~nShI~w~kVV~Ymp-gr~~~qLI~R~~~~LdPsikhg~wt~~ED~  369 (939)
T KOG0049|consen  291 QCMEKFKTEVSQLSEKEWSEEEDTKLIALVKITSINSHIQWDKVVQYMP-GRTRQQLITRFSHTLDPSVKHGRWTDQEDV  369 (939)
T ss_pred             HHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHhhccCccchHHHHHhcC-CcchhhhhhhheeccCccccCCCCCCHHHH
Confidence            46555     34677999999999999999998654   8999999999 999999999999999999999999999999


Q ss_pred             HHHHHHHHhCC-cHHHHHhhCCCCChHHHHHHHHHHhHHHHhhhcCCCCC
Q 019307           77 MIIHLQALLGN-RWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQTGSDG  125 (343)
Q Consensus        77 ~Ll~lv~~~Gn-kWs~IA~~LpgRT~~qcKnRW~~~Lkkklkk~q~~~~~  125 (343)
                      +|+.+|.+||. .|.+|-..+|||++.|||.||.+.|....|+..+...+
T Consensus       370 ~L~~AV~~Yg~kdw~k~R~~vPnRSdsQcR~RY~nvL~~s~K~~rW~l~e  419 (939)
T KOG0049|consen  370 LLVCAVSRYGAKDWAKVRQAVPNRSDSQCRERYTNVLNRSAKVERWTLVE  419 (939)
T ss_pred             HHHHHHHHhCccchhhHHHhcCCccHHHHHHHHHHHHHHhhccCceeecc
Confidence            99999999995 69999999999999999999999999998887776543

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.63  E-value=2.2e-16  Score=117.44  Aligned_cols=60  Identities=40%  Similarity=0.876  Sum_probs=55.1

Q ss_pred             CCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhcccCCCccCCCChHHHHHH
Q 019307           17 WTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDHEEKMI   78 (343)
Q Consensus        17 WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~ikrg~WT~EED~~L   78 (343)
                      ||+|||++|+++|..|| .+|..||..|| .|++.+|+.||.++|+|.+++++||++||.+|
T Consensus         1 WT~eEd~~L~~~~~~~g-~~W~~Ia~~l~-~Rt~~~~~~r~~~~l~~~~~~~~wt~eEd~~L   60 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYG-NDWKKIAEHLG-NRTPKQCRNRWRNHLRPKISRGPWTKEEDQRL   60 (60)
T ss_dssp             S-HHHHHHHHHHHHHHT-S-HHHHHHHST-TS-HHHHHHHHHHTTSTTSTSSSSSHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHC-cCHHHHHHHHC-cCCHHHHHHHHHHHCcccccCCCcCHHHHhcC
Confidence            99999999999999999 59999999998 89999999999999999999999999999987

...

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=99.57  E-value=1.6e-15  Score=155.46  Aligned_cols=107  Identities=29%  Similarity=0.536  Sum_probs=102.4

Q ss_pred             CCCccCCCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhcccCCCccCCCChHHHHHHHHHHHHhCCcH
Q 019307           10 IGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDHEEKMIIHLQALLGNRW   89 (343)
Q Consensus        10 ~~ikKG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~ikrg~WT~EED~~Ll~lv~~~GnkW   89 (343)
                      ..++.|.|+..||+.|..+|+.+|+++|..||..+. .|++++|+.||+++++|.+++..|+.+||..|+.+..++|..|
T Consensus        16 ~~~k~gsw~~~EDe~l~~~vk~l~~nnws~vas~~~-~~~~kq~~~rw~~~lnp~lk~~~~~~eed~~li~l~~~~~~~w   94 (512)
T COG5147          16 TKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLI-SSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQW   94 (512)
T ss_pred             ceecCCCCCCcchhHHHHHHhhcccccHHHHHHHhc-ccccccccchhhhhhchhcccccccHHHHHHHHHHHHhcCchh
Confidence            467889999999999999999999999999999998 6899999999999999999999999999999999999999999


Q ss_pred             HHHHhhCCCCChHHHHHHHHHHhHHHHh
Q 019307           90 AAIASYLPQRTDNDIKNYWNTHLKKKLK  117 (343)
Q Consensus        90 s~IA~~LpgRT~~qcKnRW~~~Lkkklk  117 (343)
                      ..||.++++||..+|.+||...+.....
T Consensus        95 stia~~~d~rt~~~~~ery~~~~~~~~s  122 (512)
T COG5147          95 STIADYKDRRTAQQCVERYVNTLEDLSS  122 (512)
T ss_pred             hhhccccCccchHHHHHHHHHHhhhhhc
Confidence            9999999999999999999998887665

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=99.54  E-value=2.5e-15  Score=152.35  Aligned_cols=110  Identities=25%  Similarity=0.545  Sum_probs=103.3

Q ss_pred             CCCccCCCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhcccCCCccCCCChHHHHHHHHHHHHhCCcH
Q 019307           10 IGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDHEEKMIIHLQALLGNRW   89 (343)
Q Consensus        10 ~~ikKG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~ikrg~WT~EED~~Ll~lv~~~GnkW   89 (343)
                      .-++.|.|+.-||+.|..+|++||.+.|.+|++.+. ..+.+||+.||..+|+|.|++..|+.|||.+||++...+...|
T Consensus         3 i~~kggvwrntEdeilkaav~kyg~nqws~i~sll~-~kt~rqC~~rw~e~ldp~i~~tews~eederlLhlakl~p~qw   81 (617)
T KOG0050|consen    3 IEIKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLN-RKTARQCKARWEEWLDPAIKKTEWSREEDERLLHLAKLEPTQW   81 (617)
T ss_pred             eEEecceecccHHHHHHHHHHHcchHHHHHHHHHHh-hcchhHHHHHHHHHhCHHHhhhhhhhhHHHHHHHHHHhcCCcc
Confidence            457889999999999999999999999999999998 8899999999999999999999999999999999999999999


Q ss_pred             HHHHhhCCCCChHHHHHHHHHHhHHHHhhhcC
Q 019307           90 AAIASYLPQRTDNDIKNYWNTHLKKKLKKLQT  121 (343)
Q Consensus        90 s~IA~~LpgRT~~qcKnRW~~~Lkkklkk~q~  121 (343)
                      ..|+..| ||+.+||-.||+++|.........
T Consensus        82 rtIa~i~-gr~~~qc~eRy~~ll~~~~s~~~~  112 (617)
T KOG0050|consen   82 RTIADIM-GRTSQQCLERYNNLLDVYVSYHYH  112 (617)
T ss_pred             chHHHHh-hhhHHHHHHHHHHHHHHHHhhhcc
Confidence            9999999 999999999999999887655443

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=99.41  E-value=1.9e-13  Score=141.89  Aligned_cols=101  Identities=28%  Similarity=0.604  Sum_probs=92.5

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhcccCCC--ccCCCChHHHHHHHHHHH-------
Q 019307           13 KKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGI--KRGNFTDHEEKMIIHLQA-------   83 (343)
Q Consensus        13 kKG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~i--krg~WT~EED~~Ll~lv~-------   83 (343)
                      ++|.||+||++.|..+|.++| +.|..|+..|+  |.+..||+||.+|..++-  +++.||.||++.|+++|.       
T Consensus       383 ~rg~wt~ee~eeL~~l~~~~g-~~W~~Ig~~lg--r~P~~crd~wr~~~~~g~~~~r~~Ws~eEe~~Llk~V~~~~~~~~  459 (607)
T KOG0051|consen  383 KRGKWTPEEEEELKKLVVEHG-NDWKEIGKALG--RMPMDCRDRWRQYVKCGSKRNRGAWSIEEEEKLLKTVNEMIREAL  459 (607)
T ss_pred             ccCCCCcchHHHHHHHHHHhc-ccHHHHHHHHc--cCcHHHHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHhh
Confidence            899999999999999999999 69999999997  999999999999998884  999999999999999995       


Q ss_pred             Hh-------------------CCcHHHHHhhCCCCChHHHHHHHHHHhHHHH
Q 019307           84 LL-------------------GNRWAAIASYLPQRTDNDIKNYWNTHLKKKL  116 (343)
Q Consensus        84 ~~-------------------GnkWs~IA~~LpgRT~~qcKnRW~~~Lkkkl  116 (343)
                      ++                   +.+|..|+..+..|+..|||.+|+.++....
T Consensus       460 q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~qCr~Kw~kl~~~~s  511 (607)
T KOG0051|consen  460 QPQASNTDTGLQESPESTLKDDINWTLVSEMLGTRSRIQCRYKWYKLTTSPS  511 (607)
T ss_pred             cccccccchhhhcCccccccCCcchhhhhHhhcCCCcchHHHHHHHHHhhHH
Confidence            33                   1359999999999999999999999887654

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.37  E-value=9e-13  Score=94.56  Aligned_cols=46  Identities=26%  Similarity=0.564  Sum_probs=42.0

Q ss_pred             cCCCChHHHHHHHHHHHHhCCc-HHHHHhhCC-CCChHHHHHHHHHHh
Q 019307           67 RGNFTDHEEKMIIHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL  112 (343)
Q Consensus        67 rg~WT~EED~~Ll~lv~~~Gnk-Ws~IA~~Lp-gRT~~qcKnRW~~~L  112 (343)
                      |++||+|||++|++++.+||.+ |..||..|| +||..||++||++++
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence            5799999999999999999988 999999999 999999999999875

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.36  E-value=1.6e-13  Score=98.51  Aligned_cols=48  Identities=38%  Similarity=0.741  Sum_probs=43.4

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhcc
Q 019307           14 KGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYL   61 (343)
Q Consensus        14 KG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L   61 (343)
                      |++||+|||++|+++|.+||.++|..||..|+.+|+..||+.||.++|
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence            689999999999999999998679999999988999999999999875

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>PLN03212 Transcription repressor MYB5; Provisional

Probab=99.28  E-value=2.7e-12  Score=121.10  Aligned_cols=65  Identities=23%  Similarity=0.426  Sum_probs=59.8

Q ss_pred             CCCccCCCChHHHHHHHHHHHHhC-CcHHHHHhhC-CCCChHHHHHHHHHHhHHHHhhhcCCCCCCC
Q 019307           63 PGIKRGNFTDHEEKMIIHLQALLG-NRWAAIASYL-PQRTDNDIKNYWNTHLKKKLKKLQTGSDGGQ  127 (343)
Q Consensus        63 P~ikrg~WT~EED~~Ll~lv~~~G-nkWs~IA~~L-pgRT~~qcKnRW~~~Lkkklkk~q~~~~~~~  127 (343)
                      +++++++||+|||++|+++|++|| ++|..||+.+ ++||++|||.||.++|++.+++..++.+++.
T Consensus        21 ~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpWT~EED~   87 (249)
T PLN03212         21 MGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEED   87 (249)
T ss_pred             CCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCCChHHHH
Confidence            578999999999999999999999 5899999998 6999999999999999999999988876543

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.27  E-value=4.3e-12  Score=94.34  Aligned_cols=51  Identities=31%  Similarity=0.637  Sum_probs=42.8

Q ss_pred             CChHHHHHHHHHHHHhCCcHHHHHhhCCCCChHHHHHHHHHHhHHHHhhhc
Q 019307           70 FTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQ  120 (343)
Q Consensus        70 WT~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkkklkk~q  120 (343)
                      ||+|||.+|+++|.+||++|..||.+|+.||..+|++||+..|++++.+..
T Consensus         1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l~~Rt~~~~~~r~~~~l~~~~~~~~   51 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYGNDWKKIAEHLGNRTPKQCRNRWRNHLRPKISRGP   51 (60)
T ss_dssp             S-HHHHHHHHHHHHHHTS-HHHHHHHSTTS-HHHHHHHHHHTTSTTSTSSS
T ss_pred             CCHHHHHHHHHHHHHHCcCHHHHHHHHCcCCHHHHHHHHHHHCcccccCCC
Confidence            999999999999999999999999999779999999999997776554433

...

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.23  E-value=1e-12  Score=123.33  Aligned_cols=65  Identities=18%  Similarity=0.327  Sum_probs=59.2

Q ss_pred             CCCccCCCChHHHHHHHHHHHHhC-CcHHHHHhhCC-CCChHHHHHHHHHHhHHHHhhhcCCCCCCC
Q 019307           63 PGIKRGNFTDHEEKMIIHLQALLG-NRWAAIASYLP-QRTDNDIKNYWNTHLKKKLKKLQTGSDGGQ  127 (343)
Q Consensus        63 P~ikrg~WT~EED~~Ll~lv~~~G-nkWs~IA~~Lp-gRT~~qcKnRW~~~Lkkklkk~q~~~~~~~  127 (343)
                      |.+.+|+||+|||.+|+++|++|| ++|..|++.++ +|++++||.||.++|++.+++..++.++..
T Consensus         5 ~~~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~   71 (238)
T KOG0048|consen    5 PELVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEED   71 (238)
T ss_pred             ccccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHH
Confidence            345579999999999999999999 56999999999 999999999999999999999999877543

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=99.19  E-value=3.4e-11  Score=83.36  Aligned_cols=47  Identities=38%  Similarity=0.773  Sum_probs=44.3

Q ss_pred             cCCCChHHHHHHHHHHHHhC-CcHHHHHhhCCCCChHHHHHHHHHHhH
Q 019307           67 RGNFTDHEEKMIIHLQALLG-NRWAAIASYLPQRTDNDIKNYWNTHLK  113 (343)
Q Consensus        67 rg~WT~EED~~Ll~lv~~~G-nkWs~IA~~LpgRT~~qcKnRW~~~Lk  113 (343)
                      +++||++||.+|+.++.+|| .+|..||..|++||+.+|++||+.+++
T Consensus         1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~   48 (49)
T smart00717        1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK   48 (49)
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence            46899999999999999999 999999999999999999999998764

>PLN03091 hypothetical protein; Provisional

Probab=99.13  E-value=2.2e-11  Score=122.67  Aligned_cols=64  Identities=16%  Similarity=0.347  Sum_probs=58.7

Q ss_pred             CCCccCCCChHHHHHHHHHHHHhC-CcHHHHHhhC-CCCChHHHHHHHHHHhHHHHhhhcCCCCCC
Q 019307           63 PGIKRGNFTDHEEKMIIHLQALLG-NRWAAIASYL-PQRTDNDIKNYWNTHLKKKLKKLQTGSDGG  126 (343)
Q Consensus        63 P~ikrg~WT~EED~~Ll~lv~~~G-nkWs~IA~~L-pgRT~~qcKnRW~~~Lkkklkk~q~~~~~~  126 (343)
                      +.+++++||+|||++|+++|.+|| ++|..||+.+ ++|+++|||.||+++|++.+++..++.+++
T Consensus        10 qklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED   75 (459)
T PLN03091         10 QKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEE   75 (459)
T ss_pred             CCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHH
Confidence            578999999999999999999999 5799999988 499999999999999999999988887654

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=99.08  E-value=2.6e-10  Score=77.86  Aligned_cols=44  Identities=30%  Similarity=0.639  Sum_probs=41.8

Q ss_pred             CCChHHHHHHHHHHHHhC-CcHHHHHhhCCCCChHHHHHHHHHHh
Q 019307           69 NFTDHEEKMIIHLQALLG-NRWAAIASYLPQRTDNDIKNYWNTHL  112 (343)
Q Consensus        69 ~WT~EED~~Ll~lv~~~G-nkWs~IA~~LpgRT~~qcKnRW~~~L  112 (343)
                      +||++||..|+.++.+|| .+|..||..|++||..+|++||++++
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~~   45 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL   45 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHhC
Confidence            599999999999999999 89999999999999999999998763

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=99.04  E-value=1.3e-10  Score=80.44  Aligned_cols=48  Identities=38%  Similarity=0.836  Sum_probs=44.8

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhccc
Q 019307           14 KGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLR   62 (343)
Q Consensus        14 KG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~   62 (343)
                      +++||++||++|+.+|..||..+|..|+..++ +|++.+|+.||.+++.
T Consensus         1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~-~rt~~~~~~~~~~~~~   48 (49)
T smart00717        1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELP-GRTAEQCRERWNNLLK   48 (49)
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcC-CCCHHHHHHHHHHHcC
Confidence            47899999999999999999779999999999 9999999999998764

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=98.89  E-value=9.3e-10  Score=75.13  Aligned_cols=45  Identities=40%  Similarity=0.838  Sum_probs=42.1

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhcc
Q 019307           16 PWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYL   61 (343)
Q Consensus        16 ~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L   61 (343)
                      +||+|||+.|+.++..||..+|..|+..++ +|+..+|+.||.+++
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~-~rs~~~~~~~~~~~~   45 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNNWEKIAKELP-GRTPKQCRERWRNLL   45 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHhHcC-CCCHHHHHHHHHHhC
Confidence            599999999999999999779999999998 899999999998753

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=98.81  E-value=6.1e-09  Score=108.78  Aligned_cols=102  Identities=25%  Similarity=0.316  Sum_probs=85.1

Q ss_pred             CccCCCCHHHHHHHHHHHHHhCC-----------------------CCCceecccCCCCCChhhhhhhhhhcccCCC-cc
Q 019307           12 VKKGPWTPEEDIILVSYIQEHGP-----------------------GNWRSVPTNTGLLRCSKSCRLRWTNYLRPGI-KR   67 (343)
Q Consensus        12 ikKG~WT~EEDe~L~~lV~~~G~-----------------------~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~i-kr   67 (343)
                      ++-+.|+++||..|...|..|-.                       +-|..|...|| .|+.+.++.+-++...|-- ++
T Consensus       306 ~~~~~F~~eed~ale~~V~~y~~~eg~s~~q~~~~i~s~~~~~~~~~l~n~~~~~Lp-~R~~~siy~~~rR~y~~FE~~r  384 (607)
T KOG0051|consen  306 INLKKFSKEEDAALENFVNEYLANEGWSSEQFCQRIWSKDWKTIIRNLYNNLYKLLP-YRDRKSIYHHLRRAYTPFENKR  384 (607)
T ss_pred             hhhhhccHHHHHHHHHHHHHHHHhhCcchhhhhhheeccCcchHHHHHHHhhhhhcC-cccchhHHHHHHhcCCcccccc
Confidence            44589999999999999988721                       02677888898 5999998884444444433 99


Q ss_pred             CCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCChHHHHHHHHHHhHHH
Q 019307           68 GNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKK  115 (343)
Q Consensus        68 g~WT~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkkk  115 (343)
                      |.||+||++.|..+|.++|+.|..|++.| ||.+.+|+.||.++++..
T Consensus       385 g~wt~ee~eeL~~l~~~~g~~W~~Ig~~l-gr~P~~crd~wr~~~~~g  431 (607)
T KOG0051|consen  385 GKWTPEEEEELKKLVVEHGNDWKEIGKAL-GRMPMDCRDRWRQYVKCG  431 (607)
T ss_pred             CCCCcchHHHHHHHHHHhcccHHHHHHHH-ccCcHHHHHHHHHhhccc
Confidence            99999999999999999999999999999 999999999999987653

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=98.33  E-value=7.3e-08  Score=99.67  Aligned_cols=96  Identities=27%  Similarity=0.603  Sum_probs=84.0

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhcccC--CCccCCCChHHHHHHHHHHHHhC----
Q 019307           13 KKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRP--GIKRGNFTDHEEKMIIHLQALLG----   86 (343)
Q Consensus        13 kKG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P--~ikrg~WT~EED~~Ll~lv~~~G----   86 (343)
                      .+|.||+||+..|...+.++| ..|..|...++  |-+..||+||.+|..+  .+++++|+.||+.+|...+...-    
T Consensus       290 ~~~~wt~e~~~eL~~~~~~~~-~~w~~ig~~~~--rmp~~crd~wr~~~~~g~t~~~~~ws~eee~~l~~vv~e~~~~~~  366 (512)
T COG5147         290 QRGKWTKEEEQELAKLVVEHG-GSWTEIGKLLG--RMPNDCRDRWRDYVKCGDTLKRNRWSIEEEELLDKVVNEMRLEAQ  366 (512)
T ss_pred             hhccCcccccccccccccccc-chhhHhhhhhc--cCcHHHHHHHhhhccccCccCCCCCchhhhhhHHHHHHHHHHHHh
Confidence            479999999999999999999 59999998876  9999999999999988  57888999999999998876332    


Q ss_pred             ----CcHHHHHhhCCCCChHHHHHHHHHH
Q 019307           87 ----NRWAAIASYLPQRTDNDIKNYWNTH  111 (343)
Q Consensus        87 ----nkWs~IA~~LpgRT~~qcKnRW~~~  111 (343)
                          ..|..|+..+++|...+|+.++..+
T Consensus       367 ~~~~~~~~li~~~~~~~~~~~~~~~~~~~  395 (512)
T COG5147         367 QSSRILWLLIAQNIRNRLQHHCRDKYGVL  395 (512)
T ss_pred             hhhhhhHHHHHHhhhccccCCCCCccccc
Confidence                3599999999999888888776543

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=97.80  E-value=1.8e-05  Score=59.61  Aligned_cols=49  Identities=12%  Similarity=0.211  Sum_probs=43.8

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCCCCC---ceecccCCCCC-Chhhhhhhhhhcc
Q 019307           13 KKGPWTPEEDIILVSYIQEHGPGNW---RSVPTNTGLLR-CSKSCRLRWTNYL   61 (343)
Q Consensus        13 kKG~WT~EEDe~L~~lV~~~G~~nW---~~IA~~l~~~R-t~kQCR~RW~n~L   61 (343)
                      ++-.||+||.++++++|+.+|.++|   +.|+..|...| +..||+.|++.|.
T Consensus         2 ~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~   54 (57)
T TIGR01557         2 PRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYR   54 (57)
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            4568999999999999999998899   99999887567 9999999998874

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=97.63  E-value=3.9e-05  Score=79.22  Aligned_cols=62  Identities=27%  Similarity=0.492  Sum_probs=57.3

Q ss_pred             CccCCCChHHHHHHHHHHHHhC-CcHHHHHhhCCCCChHHHHHHHHHHhHHHHhhhcCCCCCC
Q 019307           65 IKRGNFTDHEEKMIIHLQALLG-NRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQTGSDGG  126 (343)
Q Consensus        65 ikrg~WT~EED~~Ll~lv~~~G-nkWs~IA~~LpgRT~~qcKnRW~~~Lkkklkk~q~~~~~~  126 (343)
                      ++.|-|+.-||++|-..|.+|| +.|+.|++.++-.|+.||++||+..+.+.+++..+..+.+
T Consensus         5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~rw~e~ldp~i~~tews~eed   67 (617)
T KOG0050|consen    5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKARWEEWLDPAIKKTEWSREED   67 (617)
T ss_pred             EecceecccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHHHHHhCHHHhhhhhhhhHH
Confidence            5778999999999999999999 6799999999999999999999999999999988886543

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.51  E-value=0.00015  Score=73.62  Aligned_cols=48  Identities=23%  Similarity=0.449  Sum_probs=43.7

Q ss_pred             CccCCCChHHHHHHHHHHHHhC-CcHHHHHhhCCCCChHHHHHHHHHHh
Q 019307           65 IKRGNFTDHEEKMIIHLQALLG-NRWAAIASYLPQRTDNDIKNYWNTHL  112 (343)
Q Consensus        65 ikrg~WT~EED~~Ll~lv~~~G-nkWs~IA~~LpgRT~~qcKnRW~~~L  112 (343)
                      +-...||.+||.+||+++..|| ++|..||.++..|+..+|+.+|.+++
T Consensus        70 i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~f  118 (438)
T KOG0457|consen   70 ILDPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHF  118 (438)
T ss_pred             CCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHH
Confidence            4456899999999999999999 89999999999999999999997654

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.49  E-value=4.9e-05  Score=77.09  Aligned_cols=49  Identities=22%  Similarity=0.635  Sum_probs=45.6

Q ss_pred             CccCCCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhcc
Q 019307           12 VKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYL   61 (343)
Q Consensus        12 ikKG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L   61 (343)
                      +-..-||.+|+-+|++++..||.|||..||.++| .|+..+|+++|.+++
T Consensus        70 i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIG-tKtkeeck~hy~k~f  118 (438)
T KOG0457|consen   70 ILDPSWTADEEILLLEAAETYGFGNWQDIADHIG-TKTKEECKEHYLKHF  118 (438)
T ss_pred             CCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHc-ccchHHHHHHHHHHH
Confidence            3457899999999999999999999999999999 999999999999865

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=97.42  E-value=0.00038  Score=52.44  Aligned_cols=46  Identities=15%  Similarity=0.255  Sum_probs=40.5

Q ss_pred             cCCCChHHHHHHHHHHHHhCC-cH---HHHHhhCC-CC-ChHHHHHHHHHHh
Q 019307           67 RGNFTDHEEKMIIHLQALLGN-RW---AAIASYLP-QR-TDNDIKNYWNTHL  112 (343)
Q Consensus        67 rg~WT~EED~~Ll~lv~~~Gn-kW---s~IA~~Lp-gR-T~~qcKnRW~~~L  112 (343)
                      +-.||+||...+++++..+|. +|   ..|+..|. .| |..||+.+...+.
T Consensus         3 r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~   54 (57)
T TIGR01557         3 RVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYR   54 (57)
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            557999999999999999996 99   99999884 45 9999999987654

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>PF13325 MCRS_N: N-terminal region of micro-spherule protein

Probab=97.28  E-value=0.002  Score=59.86  Aligned_cols=103  Identities=20%  Similarity=0.421  Sum_probs=74.8

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCCceecccCCC--CCChhhhhhhhhhcc-cCCC--------------------ccCCCCh
Q 019307           16 PWTPEEDIILVSYIQEHGPGNWRSVPTNTGL--LRCSKSCRLRWTNYL-RPGI--------------------KRGNFTD   72 (343)
Q Consensus        16 ~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~--~Rt~kQCR~RW~n~L-~P~i--------------------krg~WT~   72 (343)
                      +|+++.|-.|+.+|..-.  +-..|+..+..  .-|-..+.+||+..| +|.+                    .+.+||.
T Consensus         1 rW~~~DDl~Li~av~~~~--~L~~v~~gvkFS~~fT~~Ei~~RW~~llyd~~is~~a~~~m~~l~p~~~~~iq~kalfS~   78 (199)
T PF13325_consen    1 RWKPEDDLLLINAVEQTN--DLESVHLGVKFSCKFTLQEIEERWYALLYDPVISRIAVAAMRNLHPELIAAIQSKALFSK   78 (199)
T ss_pred             CCCchhhHHHHHHHHHhc--CHHHHHccCCcCCcCcHHHHHHHHHHHHcChhhHHHHHHHHHhCCcchhhcccccCCCCH
Confidence            699999999999998765  55566554432  236788899999876 3322                    3458999


Q ss_pred             HHHHHHHHHHHHhCC---cHHHHHh-----hCCCCChHHHHHHHHHHhHHHHhhhc
Q 019307           73 HEEKMIIHLQALLGN---RWAAIAS-----YLPQRTDNDIKNYWNTHLKKKLKKLQ  120 (343)
Q Consensus        73 EED~~Ll~lv~~~Gn---kWs~IA~-----~LpgRT~~qcKnRW~~~Lkkklkk~q  120 (343)
                      +||++|.........   .+.+|=.     +-++||++++.++|..+.+..+-.-|
T Consensus        79 ~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lmkqy~LL~DQ  134 (199)
T PF13325_consen   79 EEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWRLMKQYHLLPDQ  134 (199)
T ss_pred             HHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHHHHHHhchhhcc
Confidence            999999997765542   4777732     23789999999999976666554433

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=97.15  E-value=0.00065  Score=61.11  Aligned_cols=51  Identities=16%  Similarity=0.286  Sum_probs=45.0

Q ss_pred             ccCCCChHHHHHHHHHHHHhC---C----cHHHHHhhCCCCChHHHHHHHHHHhHHHHh
Q 019307           66 KRGNFTDHEEKMIIHLQALLG---N----RWAAIASYLPQRTDNDIKNYWNTHLKKKLK  117 (343)
Q Consensus        66 krg~WT~EED~~Ll~lv~~~G---n----kWs~IA~~LpgRT~~qcKnRW~~~Lkkklk  117 (343)
                      +...||.|||.+|.+.|..|=   .    -+.+|+..| +||...|.-|||.++++++.
T Consensus         3 RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAACGFRWNs~VRkqY~   60 (161)
T TIGR02894         3 RQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAACGFRWNAYVRKQYE   60 (161)
T ss_pred             cccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHHhcchHHHHHHHHHH
Confidence            456899999999999999883   2    389999999 99999999999999998764

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=97.09  E-value=0.00055  Score=53.99  Aligned_cols=54  Identities=39%  Similarity=0.610  Sum_probs=37.2

Q ss_pred             cCCCChHHHHHHHHHHHH------hC--C------cHHHHHhhC----CCCChHHHHHHHHHHhHHHHhhhcC
Q 019307           67 RGNFTDHEEKMIIHLQAL------LG--N------RWAAIASYL----PQRTDNDIKNYWNTHLKKKLKKLQT  121 (343)
Q Consensus        67 rg~WT~EED~~Ll~lv~~------~G--n------kWs~IA~~L----pgRT~~qcKnRW~~~Lkkklkk~q~  121 (343)
                      |..||.+|...||+++..      ++  +      -|..||..|    ..||+.||+++|+++ ++.+++...
T Consensus         1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L-~~~Yk~~k~   72 (90)
T PF13837_consen    1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNL-KKKYKKIKD   72 (90)
T ss_dssp             --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHH-HHHHHCSSS
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHHHHHHHh
Confidence            357999999999999877      21  1      399999987    379999999999995 555665544

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=96.84  E-value=0.0019  Score=49.93  Aligned_cols=51  Identities=18%  Similarity=0.405  Sum_probs=32.9

Q ss_pred             cCCCChHHHHHHHHHHHHhC--------Cc-HHHHHhhCC-CCChHHHHHHHHHHhHHHHh
Q 019307           67 RGNFTDHEEKMIIHLQALLG--------NR-WAAIASYLP-QRTDNDIKNYWNTHLKKKLK  117 (343)
Q Consensus        67 rg~WT~EED~~Ll~lv~~~G--------nk-Ws~IA~~Lp-gRT~~qcKnRW~~~Lkkklk  117 (343)
                      |.+||.+||..|++.|+.+.        |+ |.+++..-+ .+|-...|+||...|+.+..
T Consensus         2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~~~   62 (65)
T PF08914_consen    2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGRPR   62 (65)
T ss_dssp             -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT-----
T ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccc
Confidence            46899999999999997652        22 999999877 99999999999988877643

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=96.63  E-value=0.0009  Score=68.73  Aligned_cols=46  Identities=22%  Similarity=0.578  Sum_probs=43.0

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhc
Q 019307           13 KKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNY   60 (343)
Q Consensus        13 kKG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~   60 (343)
                      ....||.+|..+|++.|+.|| .+|.+||.++| .|+..||..||.+.
T Consensus       278 ~dk~WS~qE~~LLLEGIe~yg-DdW~kVA~HVg-tKt~EqCIl~FL~L  323 (531)
T COG5259         278 RDKNWSRQELLLLLEGIEMYG-DDWDKVARHVG-TKTKEQCILHFLQL  323 (531)
T ss_pred             ccccccHHHHHHHHHHHHHhh-hhHHHHHHHhC-CCCHHHHHHHHHcC
Confidence            567999999999999999999 59999999999 99999999999863

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=96.63  E-value=0.0024  Score=66.70  Aligned_cols=46  Identities=15%  Similarity=0.360  Sum_probs=43.0

Q ss_pred             ccCCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCChHHHHHHHHHH
Q 019307           66 KRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTH  111 (343)
Q Consensus        66 krg~WT~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~  111 (343)
                      -+..||++|..+|++.+..||.+|.+||.++..||..||-.++..+
T Consensus       252 ~~~~WT~qE~lLLLE~ie~y~ddW~kVa~hVg~ks~eqCI~kFL~L  297 (506)
T KOG1279|consen  252 ARPNWTEQETLLLLEAIEMYGDDWNKVADHVGTKSQEQCILKFLRL  297 (506)
T ss_pred             CCCCccHHHHHHHHHHHHHhcccHHHHHhccCCCCHHHHHHHHHhc
Confidence            4568999999999999999999999999999999999999998764

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=96.60  E-value=0.0021  Score=66.14  Aligned_cols=55  Identities=15%  Similarity=0.212  Sum_probs=47.0

Q ss_pred             cCCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCChHHHHHHHHHH--hHHHHhhhcC
Q 019307           67 RGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTH--LKKKLKKLQT  121 (343)
Q Consensus        67 rg~WT~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~--Lkkklkk~q~  121 (343)
                      ..+||.+|..+|++.++.||..|.+||+++..||..||--||-++  ..+-+.+++.
T Consensus       279 dk~WS~qE~~LLLEGIe~ygDdW~kVA~HVgtKt~EqCIl~FL~LPieD~~l~k~~~  335 (531)
T COG5259         279 DKNWSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQCILHFLQLPIEDNYLSKGDG  335 (531)
T ss_pred             cccccHHHHHHHHHHHHHhhhhHHHHHHHhCCCCHHHHHHHHHcCCcchhhhhcccC
Confidence            348999999999999999999999999999999999999999864  2444555544

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=96.40  E-value=0.002  Score=67.29  Aligned_cols=47  Identities=23%  Similarity=0.622  Sum_probs=43.1

Q ss_pred             CccCCCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhc
Q 019307           12 VKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNY   60 (343)
Q Consensus        12 ikKG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~   60 (343)
                      --++.||.+|+.+|+++|+.|| .+|.+|+.+++ .|+..||..|+.+.
T Consensus       251 ~~~~~WT~qE~lLLLE~ie~y~-ddW~kVa~hVg-~ks~eqCI~kFL~L  297 (506)
T KOG1279|consen  251 SARPNWTEQETLLLLEAIEMYG-DDWNKVADHVG-TKSQEQCILKFLRL  297 (506)
T ss_pred             cCCCCccHHHHHHHHHHHHHhc-ccHHHHHhccC-CCCHHHHHHHHHhc
Confidence            3468999999999999999999 59999999999 99999999998763

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=96.35  E-value=0.0049  Score=56.06  Aligned_cols=51  Identities=14%  Similarity=0.303  Sum_probs=43.4

Q ss_pred             CccCCCChHHHHHHHHHHHHhCCc-------HHHHHhhCCCCChHHHHHHHHHHhHHHH
Q 019307           65 IKRGNFTDHEEKMIIHLQALLGNR-------WAAIASYLPQRTDNDIKNYWNTHLKKKL  116 (343)
Q Consensus        65 ikrg~WT~EED~~Ll~lv~~~Gnk-------Ws~IA~~LpgRT~~qcKnRW~~~Lkkkl  116 (343)
                      .+...||.|||.+|-+.|..|+..       ...++..| +||..+|..|||.++++++
T Consensus         3 ~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L-~rt~aac~fRwNs~vrk~Y   60 (170)
T PRK13923          3 TRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL-KRTAAACGFRWNSVVRKQY   60 (170)
T ss_pred             chhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH-hhhHHHHHhHHHHHHHHHH
Confidence            356789999999999999888732       67778888 9999999999999999764

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=96.21  E-value=0.016  Score=44.91  Aligned_cols=51  Identities=27%  Similarity=0.503  Sum_probs=41.2

Q ss_pred             cCCCChHHHHHHHHHHHHhC----C-------------cHHHHHhhC-----CCCChHHHHHHHHHHhHHHHh
Q 019307           67 RGNFTDHEEKMIIHLQALLG----N-------------RWAAIASYL-----PQRTDNDIKNYWNTHLKKKLK  117 (343)
Q Consensus        67 rg~WT~EED~~Ll~lv~~~G----n-------------kWs~IA~~L-----pgRT~~qcKnRW~~~Lkkklk  117 (343)
                      ...||.+|..+|++++.+|.    +             -|..|+..|     +.||..+||.+|.++...--+
T Consensus         2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~~Kk   74 (78)
T PF13873_consen    2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSKAKK   74 (78)
T ss_pred             CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH
Confidence            35799999999999998873    1             299999876     369999999999987665433

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=96.14  E-value=0.003  Score=48.88  Aligned_cols=51  Identities=27%  Similarity=0.497  Sum_probs=33.2

Q ss_pred             cCCCCHHHHHHHHHHHHHhCC------C--CCceecccCCCCCChhhhhhhhhhcccCC
Q 019307           14 KGPWTPEEDIILVSYIQEHGP------G--NWRSVPTNTGLLRCSKSCRLRWTNYLRPG   64 (343)
Q Consensus        14 KG~WT~EEDe~L~~lV~~~G~------~--nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~   64 (343)
                      +-+||.|||+.|+++|..+..      +  -|++++..-++.++..+-|+||...|.+.
T Consensus         2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~   60 (65)
T PF08914_consen    2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGR   60 (65)
T ss_dssp             -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT---
T ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Confidence            457999999999999976632      1  29999887766899999999999988754

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=96.04  E-value=0.0018  Score=58.23  Aligned_cols=50  Identities=28%  Similarity=0.658  Sum_probs=42.6

Q ss_pred             CccCCCCHHHHHHHHHHHHHhCC--C----CCceecccCCCCCChhhhhhhhhhcccC
Q 019307           12 VKKGPWTPEEDIILVSYIQEHGP--G----NWRSVPTNTGLLRCSKSCRLRWTNYLRP   63 (343)
Q Consensus        12 ikKG~WT~EEDe~L~~lV~~~G~--~----nW~~IA~~l~~~Rt~kQCR~RW~n~L~P   63 (343)
                      .++..||.|||.+|.+.|-+|-.  +    ...+|+..++  ||+..|.-||+.+++.
T Consensus         2 ~RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L~--RTsAACGFRWNs~VRk   57 (161)
T TIGR02894         2 TRQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRALN--RTAAACGFRWNAYVRK   57 (161)
T ss_pred             ccccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHc--ccHHHhcchHHHHHHH
Confidence            46789999999999999999931  1    4788999886  9999999999998863

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=95.76  E-value=0.0027  Score=49.96  Aligned_cols=48  Identities=27%  Similarity=0.630  Sum_probs=32.7

Q ss_pred             cCCCCHHHHHHHHHHHHH--h----C--CC-----CCceecccC---CCCCChhhhhhhhhhcc
Q 019307           14 KGPWTPEEDIILVSYIQE--H----G--PG-----NWRSVPTNT---GLLRCSKSCRLRWTNYL   61 (343)
Q Consensus        14 KG~WT~EEDe~L~~lV~~--~----G--~~-----nW~~IA~~l---~~~Rt~kQCR~RW~n~L   61 (343)
                      +-.||.+|...|+.++..  +    +  ..     -|..||..|   |..|++.||+.||.+..
T Consensus         1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~   64 (90)
T PF13837_consen    1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLK   64 (90)
T ss_dssp             --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            357999999999999887  2    1  11     399999775   56799999999998743

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=95.66  E-value=0.014  Score=57.96  Aligned_cols=48  Identities=25%  Similarity=0.479  Sum_probs=43.2

Q ss_pred             ccCCCChHHHHHHHHHHHHhC-CcHHHHHhhCCCCChHHHHHHHHHHhH
Q 019307           66 KRGNFTDHEEKMIIHLQALLG-NRWAAIASYLPQRTDNDIKNYWNTHLK  113 (343)
Q Consensus        66 krg~WT~EED~~Ll~lv~~~G-nkWs~IA~~LpgRT~~qcKnRW~~~Lk  113 (343)
                      --..|+..|+.+|++....+| ++|..||.+++.|+..+||.+|..+..
T Consensus        62 ~~e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y~  110 (432)
T COG5114          62 GEEGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMYD  110 (432)
T ss_pred             cCCCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence            345799999999999999999 899999999999999999999976544

>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional

Probab=95.30  E-value=0.042  Score=62.02  Aligned_cols=99  Identities=11%  Similarity=0.313  Sum_probs=75.8

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhh-------hhhh------cc---------------------
Q 019307           16 PWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRL-------RWTN------YL---------------------   61 (343)
Q Consensus        16 ~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~-------RW~n------~L---------------------   61 (343)
                      .|+.-+=..++.+..+||..+-..||..+. +++...++.       ||..      ++                     
T Consensus       826 ~w~~~~f~~f~~~~~~~gr~~~~~i~~~~~-~k~~~ev~~y~~~f~~~~~~~~~~~~~~~~ie~~e~~~~~~~~~~~~~~  904 (1033)
T PLN03142        826 TWSRRDFNAFIRACEKYGRNDIKSIASEME-GKTEEEVERYAKVFWERYKELNDYDRIIKNIERGEARISRKDEIMKAIG  904 (1033)
T ss_pred             cccHHHHHHHHHHHHHhCHhHHHHHHHHhc-CCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            588888888888889999888899999987 777766653       2211      00                     


Q ss_pred             ----------------cCCCccCCCChHHHHHHHHHHHHhC-CcHHHHHh------------hCCCCChHHHHHHHHHHh
Q 019307           62 ----------------RPGIKRGNFTDHEEKMIIHLQALLG-NRWAAIAS------------YLPQRTDNDIKNYWNTHL  112 (343)
Q Consensus        62 ----------------~P~ikrg~WT~EED~~Ll~lv~~~G-nkWs~IA~------------~LpgRT~~qcKnRW~~~L  112 (343)
                                      .+..++..||+|||..|+-++.+|| .+|..|-.            ++..||+..|..|.++++
T Consensus       905 ~k~~~~~~p~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l~  984 (1033)
T PLN03142        905 KKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTLI  984 (1033)
T ss_pred             HHHHHccCcHHHceeecCCCCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHHH
Confidence                            0233445699999999999999999 68999843            235799999999999988


Q ss_pred             HHH
Q 019307          113 KKK  115 (343)
Q Consensus       113 kkk  115 (343)
                      +--
T Consensus       985 ~~~  987 (1033)
T PLN03142        985 RLI  987 (1033)
T ss_pred             HHH
Confidence            764

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=95.15  E-value=0.0069  Score=59.99  Aligned_cols=48  Identities=19%  Similarity=0.563  Sum_probs=44.9

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhccc
Q 019307           14 KGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLR   62 (343)
Q Consensus        14 KG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~   62 (343)
                      ---|+.+|+.+|+++..-.|-+||..||..+| .|....|+.+|..++.
T Consensus        63 ~e~WgadEEllli~~~~TlGlGNW~dIadyiG-sr~kee~k~HylK~y~  110 (432)
T COG5114          63 EEGWGADEELLLIECLDTLGLGNWEDIADYIG-SRAKEEIKSHYLKMYD  110 (432)
T ss_pred             CCCcCchHHHHHHHHHHhcCCCcHHHHHHHHh-hhhhHHHHHHHHHHHh
Confidence            34799999999999999999999999999999 9999999999998765

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=94.42  E-value=0.012  Score=45.67  Aligned_cols=49  Identities=24%  Similarity=0.448  Sum_probs=39.2

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCC----------------CCCceecccC----CCCCChhhhhhhhhhcc
Q 019307           13 KKGPWTPEEDIILVSYIQEHGP----------------GNWRSVPTNT----GLLRCSKSCRLRWTNYL   61 (343)
Q Consensus        13 kKG~WT~EEDe~L~~lV~~~G~----------------~nW~~IA~~l----~~~Rt~kQCR~RW~n~L   61 (343)
                      ++..||.+|.+.|+++|.+|..                .-|..|+..+    +..|+..+|+.+|.+..
T Consensus         1 R~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk   69 (78)
T PF13873_consen    1 RKPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLK   69 (78)
T ss_pred             CCCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence            4678999999999999998831                1499998655    22599999999999864

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=94.32  E-value=0.01  Score=53.95  Aligned_cols=50  Identities=24%  Similarity=0.528  Sum_probs=40.2

Q ss_pred             CCccCCCCHHHHHHHHHHHHHhCCC------CCceecccCCCCCChhhhhhhhhhccc
Q 019307           11 GVKKGPWTPEEDIILVSYIQEHGPG------NWRSVPTNTGLLRCSKSCRLRWTNYLR   62 (343)
Q Consensus        11 ~ikKG~WT~EEDe~L~~lV~~~G~~------nW~~IA~~l~~~Rt~kQCR~RW~n~L~   62 (343)
                      ..|+..||.|||.+|.+.|-+|+..      ....++..|.  |+...|..||+.+++
T Consensus         2 k~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L~--rt~aac~fRwNs~vr   57 (170)
T PRK13923          2 KTRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDALK--RTAAACGFRWNSVVR   57 (170)
T ss_pred             cchhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHh--hhHHHHHhHHHHHHH
Confidence            3578899999999999999988643      2556666665  999999999977765

>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices

Probab=93.65  E-value=0.14  Score=44.07  Aligned_cols=51  Identities=20%  Similarity=0.417  Sum_probs=40.8

Q ss_pred             CCccCCCChHHHHHHHHHHHHhCC----cHHHHHhh------------CCCCChHHHHHHHHHHhHH
Q 019307           64 GIKRGNFTDHEEKMIIHLQALLGN----RWAAIASY------------LPQRTDNDIKNYWNTHLKK  114 (343)
Q Consensus        64 ~ikrg~WT~EED~~Ll~lv~~~Gn----kWs~IA~~------------LpgRT~~qcKnRW~~~Lkk  114 (343)
                      ..++..||++||.-|+-++.+||-    .|..|-..            +..||+..|..|.+++++-
T Consensus        46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~  112 (118)
T PF09111_consen   46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKL  112 (118)
T ss_dssp             TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHH
T ss_pred             CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHH
Confidence            556779999999999999999995    79888643            3469999999999998875

It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.

>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]

Probab=93.49  E-value=0.18  Score=49.67  Aligned_cols=56  Identities=20%  Similarity=0.324  Sum_probs=43.1

Q ss_pred             cCCCChHHHHHHHHHHHHh----------CCcHHHHHhhC----CCCChHHHHHHHHHHhHHHHhhhcCCC
Q 019307           67 RGNFTDHEEKMIIHLQALL----------GNRWAAIASYL----PQRTDNDIKNYWNTHLKKKLKKLQTGS  123 (343)
Q Consensus        67 rg~WT~EED~~Ll~lv~~~----------GnkWs~IA~~L----pgRT~~qcKnRW~~~Lkkklkk~q~~~  123 (343)
                      ...|+.+|-..||++....          +..|..||+.+    .-||+.|||++|.++.++ +++.....
T Consensus        54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~-Yk~~k~~~  123 (345)
T KOG4282|consen   54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKK-YKKEKAKK  123 (345)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH-HHHHhccc
Confidence            3689999999999987653          23499999955    369999999999996554 65555443

>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]

Probab=92.01  E-value=0.12  Score=52.64  Aligned_cols=82  Identities=21%  Similarity=0.344  Sum_probs=60.9

Q ss_pred             CCceecccCCCCCChhhhhhhhhhcccC-------------------------CCccCCCChHHHHHHHHHHHHhCCcHH
Q 019307           36 NWRSVPTNTGLLRCSKSCRLRWTNYLRP-------------------------GIKRGNFTDHEEKMIIHLQALLGNRWA   90 (343)
Q Consensus        36 nW~~IA~~l~~~Rt~kQCR~RW~n~L~P-------------------------~ikrg~WT~EED~~Ll~lv~~~GnkWs   90 (343)
                      .|.-++=..+ -|...--..||...-++                         .++...||.+|-..|.+|++.|.-+|-
T Consensus        75 ~W~w~pFtn~-aRkD~~~l~HWvr~~d~~~dypfakfNk~vdipsYt~eEYe~~l~dn~WskeETD~LF~lck~fDLRf~  153 (445)
T KOG2656|consen   75 PWKWVPFTNS-ARKDDATLHHWVRVGDTPKDYPFAKFNKHVDIPSYTDEEYEAHLNDNSWSKEETDYLFDLCKRFDLRFF  153 (445)
T ss_pred             CceeeccCCc-cccCCceEEeeeeccCCCCCCchhhhccccCccccchHHHHHhhccccccHHHHHHHHHHHHhcCeeEE
Confidence            5766654444 56666666666655221                         122346999999999999999999999


Q ss_pred             HHHhh-----CCC-CChHHHHHHHHHHhHHHHhh
Q 019307           91 AIASY-----LPQ-RTDNDIKNYWNTHLKKKLKK  118 (343)
Q Consensus        91 ~IA~~-----Lpg-RT~~qcKnRW~~~Lkkklkk  118 (343)
                      .|+..     ++. ||-.++|+||+...++-++.
T Consensus       154 VIaDRyd~qq~~~sRTvEdLKeRyY~v~r~l~kA  187 (445)
T KOG2656|consen  154 VIADRYDNQQYKKSRTVEDLKERYYSVCRKLLKA  187 (445)
T ss_pred             EEeeccchhhccccccHHHHHHHHHHHHHHHHHc
Confidence            99875     555 99999999999988876654

>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains

Probab=92.00  E-value=0.44  Score=37.82  Aligned_cols=46  Identities=28%  Similarity=0.498  Sum_probs=35.4

Q ss_pred             CCChHHHHHHHHHHHHh---CC----------cHHHHHhhCC-----CCChHHHHHHHHHHhHH
Q 019307           69 NFTDHEEKMIIHLQALL---GN----------RWAAIASYLP-----QRTDNDIKNYWNTHLKK  114 (343)
Q Consensus        69 ~WT~EED~~Ll~lv~~~---Gn----------kWs~IA~~Lp-----gRT~~qcKnRW~~~Lkk  114 (343)
                      .||+++++.|++++.+.   |+          .|..|+..|.     ..+..||++||..+.+.
T Consensus         1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~~   64 (96)
T PF12776_consen    1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKKD   64 (96)
T ss_pred             CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHH
Confidence            49999999999998653   21          2999988772     35789999999875543

>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]

Probab=87.76  E-value=0.81  Score=46.68  Aligned_cols=47  Identities=19%  Similarity=0.305  Sum_probs=43.4

Q ss_pred             CCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCChHHHHHHHHHHhHH
Q 019307           68 GNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKK  114 (343)
Q Consensus        68 g~WT~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkk  114 (343)
                      .+|+.+|-++...+...+|..++.|+..+|.|...|||-+|.+--+.
T Consensus       366 ~~Ws~~e~ekFYKALs~wGtdF~LIs~lfP~R~RkqIKaKfi~Eek~  412 (507)
T COG5118         366 LRWSKKEIEKFYKALSIWGTDFSLISSLFPNRERKQIKAKFIKEEKV  412 (507)
T ss_pred             CcccHHHHHHHHHHHHHhcchHHHHHHhcCchhHHHHHHHHHHHhhh
Confidence            48999999999999999999999999999999999999999875544

>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]

Probab=86.17  E-value=1.8  Score=45.10  Aligned_cols=48  Identities=17%  Similarity=0.306  Sum_probs=42.9

Q ss_pred             ccCCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCChHHHHHHHHHHhH
Q 019307           66 KRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLK  113 (343)
Q Consensus        66 krg~WT~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lk  113 (343)
                      -...||.||-.++-++...||.++.+|-+.||.|+-..|..+|...-+
T Consensus       186 ~~d~WT~Ed~vlFe~aF~~~GK~F~kIrq~LP~rsLaSlvqyYy~~KK  233 (534)
T KOG1194|consen  186 FPDEWTAEDIVLFEQAFQFFGKDFHKIRQALPHRSLASLVQYYYSWKK  233 (534)
T ss_pred             CcccchHHHHHHHHHHHHHhcccHHHHHHHccCccHHHHHHHHHHHHH
Confidence            345799999999999999999999999999999999999998876544

>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription

Probab=86.06  E-value=2.3  Score=30.40  Aligned_cols=41  Identities=22%  Similarity=0.294  Sum_probs=31.1

Q ss_pred             hHHHHHHHHHHHHhCCcHHHHHhhCCCCChHHHHHHHHHHhH
Q 019307           72 DHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLK  113 (343)
Q Consensus        72 ~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lk  113 (343)
                      ++++..++.++...|-.|.+||..+ |.+...|+.+....++
T Consensus        12 ~~~~r~i~~l~~~~g~s~~eIa~~l-~~s~~~v~~~l~ra~~   52 (54)
T PF08281_consen   12 PERQREIFLLRYFQGMSYAEIAEIL-GISESTVKRRLRRARK   52 (54)
T ss_dssp             -HHHHHHHHHHHTS---HHHHHHHC-TS-HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCcCHHHHHHHH-CcCHHHHHHHHHHHHh
Confidence            4677888889889999999999999 9999999998776554

Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	343
1h8a_C	128	Crystal Structure Of Ternary Protein-Dna Complex3 L		1e-20
1h88_C	159	Crystal Structure Of Ternary Protein-Dna Complex1 L		2e-20
1mse_C	105	Solution Structure Of A Specific Dna Complex Of The		1e-19
1gv2_A	105	Crystal Structure Of C-Myb R2r3 Length = 105		1e-19
1a5j_A	110	Chicken B-Myb Dna Binding Domain, Repeat 2 And Repe		2e-18
3zqc_A	131	Structure Of The Trichomonas Vaginalis Myb3 Dna-Bin		2e-16
3osf_A	126	The Structure Of Protozoan Parasite Trichomonas Vag		1e-12
2k9n_A	107	Solution Nmr Structure Of The R2r3 Dna Binding Doma		4e-09
1mbj_A	53	Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53		1e-07
1idy_A	54	Structure Of Myb Transforming Protein, Nmr, Minimiz		2e-07
1gvd_A	52	Crystal Structure Of C-Myb R2 V103l Mutant Length =		9e-06
1gv5_A	52	Crystal Structure Of C-Myb R2 Length = 52		2e-05
1mbg_A	53	Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53		2e-05

>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3 Length = 128

Iteration: 1
 Score = 96.7 bits (239), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 43/97 (44%), Positives = 63/97 (64%), Gaps = 1/97 (1%)
Query: 14  KGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDH 73
           KGPWT EED  ++ ++Q++GP  W  +  +    R  K CR RW N+L P +K+ ++T+ 
Sbjct: 27  KGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEE 85
Query: 74  EEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNT 110
           E+++I      LGNRWA IA  LP RTDN +KN+WN+
Sbjct: 86  EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNS 122

>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1 Length = 159

Iteration: 1
 Score = 96.7 bits (239), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 46/97 (47%), Positives = 62/97 (63%), Gaps = 1/97 (1%)
Query: 14  KGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDH 73
           KGPWT EED  ++  +Q++GP  W SV       R  K CR RW N+L P +K+ ++T+ 
Sbjct: 58  KGPWTKEEDQRVIKLVQKYGPKRW-SVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEE 116
Query: 74  EEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNT 110
           E+++I      LGNRWA IA  LP RTDN IKN+WN+
Sbjct: 117 EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNS 153

>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb Dna- Binding Domain With Cooperative Recognition Helices Length = 105

Iteration: 1
 Score = 94.0 bits (232), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/97 (47%), Positives = 62/97 (63%), Gaps = 1/97 (1%)
Query: 14  KGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDH 73
           KGPWT EED  ++  +Q++GP  W SV       R  K CR RW N+L P +K+ ++T+ 
Sbjct: 4   KGPWTKEEDQRVIKLVQKYGPKRW-SVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEE 62
Query: 74  EEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNT 110
           E+++I      LGNRWA IA  LP RTDN IKN+WN+
Sbjct: 63  EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNS 99

>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3 Length = 105

Iteration: 1
 Score = 94.0 bits (232), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/97 (47%), Positives = 62/97 (63%), Gaps = 1/97 (1%)
Query: 14  KGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDH 73
           KGPWT EED  ++  +Q++GP  W SV       R  K CR RW N+L P +K+ ++T+ 
Sbjct: 4   KGPWTKEEDQRVIKLVQKYGPKRW-SVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEE 62
Query: 74  EEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNT 110
           E+++I      LGNRWA IA  LP RTDN IKN+WN+
Sbjct: 63  EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNS 99

>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3, Nmr, 32 Structures Length = 110

Iteration: 1
 Score = 90.1 bits (222), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 41/97 (42%), Positives = 62/97 (63%), Gaps = 1/97 (1%)
Query: 14  KGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDH 73
           KGPWT EED  ++  ++++G   W  +  +    R  K CR RW N+L P +K+ ++T+ 
Sbjct: 7   KGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKG-RLGKQCRERWHNHLNPEVKKSSWTEE 65
Query: 74  EEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNT 110
           E+++I     +LGNRWA IA  LP RTDN +KN+WN+
Sbjct: 66  EDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNS 102

>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding Domain Bound To A Promoter Sequence Reveals A Unique C- Terminal Beta-Hairpin Conformation Length = 131

Iteration: 1
 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 42/99 (42%), Positives = 59/99 (59%), Gaps = 5/99 (5%)
Query: 14  KGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLL--RCSKSCRLRWTNYLRPGIKRGNFT 71
           KGP+T  ED ++  Y++E+GP NW   P  T  L  R  K CR RW N+L P + +  +T
Sbjct: 2   KGPFTEAEDDLIREYVKENGPQNW---PRITSFLPNRSPKQCRERWFNHLDPAVVKHAWT 58
Query: 72  DHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNT 110
             E++ I      LG++W+ IA  +P RTDN IKN WN+
Sbjct: 59  PEEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNS 97

>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis Myb2 In Complex With Mre-2f-13 Dna Length = 126

Iteration: 1
 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/100 (38%), Positives = 54/100 (54%), Gaps = 2/100 (2%)
Query: 11  GVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNF 70
             KK  +TPEED +L   + +HG  +W+ +   T   R ++ CR RW NYL P I    +
Sbjct: 8   AAKKQKFTPEEDEMLKRAVAQHG-SDWKMIAA-TFPNRNARQCRDRWKNYLAPSISHTPW 65
Query: 71  TDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNT 110
           T  E+ +++      G +WA IA + P RTD  IKN W T
Sbjct: 66  TAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVT 105

>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein From Protozoan Parasite Trichomonas Vaginalis Length = 107

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Query: 14  KGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDH 73
           K  +T EED+ L   +  +G  +W  + +   + R  + CR RW NY+ P ++   ++  
Sbjct: 1   KVKFTEEEDLKLQQLVMRYGAKDWIRI-SQLMITRNPRQCRERWNNYINPALRTDPWSPE 59
Query: 74  EEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYW 108
           E+ ++    A  G +W  I+ +L  R+DN+I+N W
Sbjct: 60  EDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRW 94

>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 33/46 (71%)
Query: 65  IKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNT 110
           +K+ ++T+ E+++I      LGNRWA IA  LP RTDN IKN+WN+
Sbjct: 1   VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNS 46

>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized Average Structure Length = 54

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 33/46 (71%)
Query: 65  IKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNT 110
           +K+ ++T+ E++++      LGNRWA IA  LP RTDN IKN+WN+
Sbjct: 3   VKKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNS 48

>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant Length = 52

Iteration: 1
 Score = 47.8 bits (112), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 24/50 (48%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 14 KGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRP 63
          KGPWT EED  L+  +Q++GP  W SV       R  K CR RW N+L P
Sbjct: 3  KGPWTKEEDQRLIKLVQKYGPKRW-SVIAKHLKGRIGKQCRERWHNHLNP 51

>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2 Length = 52

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/50 (46%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 14 KGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRP 63
          KGPWT EED  ++  +Q++GP  W SV       R  K CR RW N+L P
Sbjct: 3  KGPWTKEEDQRVIKLVQKYGPKRW-SVIAKHLKGRIGKQCRERWHNHLNP 51

>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/50 (46%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 14 KGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRP 63
          KGPWT EED  ++  +Q++GP  W SV       R  K CR RW N+L P
Sbjct: 3  KGPWTKEEDQRVIELVQKYGPKRW-SVIAKHLKGRIGKQCRERWHNHLNP 51

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	343
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	2e-66
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	2e-66
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	1e-64
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	1e-56
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	8e-55
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	6e-34
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	4e-54
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	8e-27
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	9e-24
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	9e-20
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	9e-16
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	6e-11
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	1e-05
1w0u_A	55	Telomeric repeat binding factor 2; telomere, DNA-b	2e-09
1w0u_A	55	Telomeric repeat binding factor 2; telomere, DNA-b	9e-06
1vf9_A	64	Telomeric repeat binding factor 2; MYB, helix-turn	4e-09
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	1e-08
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	7e-07
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	8e-08
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	1e-07
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	6e-07
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	1e-06
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	5e-06
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	7e-06
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	8e-06
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	8e-06
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	2e-04
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	3e-04

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Length = 131

 Score =  204 bits (521), Expect = 2e-66
 Identities = 40/127 (31%), Positives = 66/127 (51%), Gaps = 1/127 (0%)

Query: 14  KGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDH 73
           KGP+T  ED ++  Y++E+GP NW  + +     R  K CR RW N+L P + +  +T  
Sbjct: 2   KGPFTEAEDDLIREYVKENGPQNWPRITSFLPN-RSPKQCRERWFNHLDPAVVKHAWTPE 60

Query: 74  EEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQTGSDGGQNNQDGF 133
           E++ I      LG++W+ IA  +P RTDN IKN WN+ + K++       +    ++   
Sbjct: 61  EDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRISTNSNHKEILLPDRSKK 120

Query: 134 SSTSQQA 140
              +   
Sbjct: 121 RKAADVP 127

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Length = 105

 Score =  203 bits (519), Expect = 2e-66
 Identities = 45/105 (42%), Positives = 68/105 (64%), Gaps = 1/105 (0%)

Query: 12  VKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFT 71
           + KGPWT EED  ++  +Q++GP  W  +  +    R  K CR RW N+L P +K+ ++T
Sbjct: 2   LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWT 60

Query: 72  DHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKL 116
           + E+++I      LGNRWA IA  LP RTDN IKN+WN+ +++K+
Sbjct: 61  EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Length = 128

 Score =  199 bits (509), Expect = 1e-64
 Identities = 44/106 (41%), Positives = 69/106 (65%), Gaps = 1/106 (0%)

Query: 11  GVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNF 70
            + KGPWT EED  ++ ++Q++GP  W  +  +    R  K CR RW N+L P +K+ ++
Sbjct: 24  ELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKG-RIGKQCRERWHNHLNPEVKKTSW 82

Query: 71  TDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKL 116
           T+ E+++I      LGNRWA IA  LP RTDN +KN+WN+ +++K+
Sbjct: 83  TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Length = 126

 Score =  179 bits (456), Expect = 1e-56
 Identities = 38/111 (34%), Positives = 55/111 (49%), Gaps = 2/111 (1%)

Query: 8   DKIGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKR 67
           +    KK  +TPEED +L   + +HG  +W+ +       R ++ CR RW NYL P I  
Sbjct: 5   NLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFPN-RNARQCRDRWKNYLAPSISH 62

Query: 68  GNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKK 118
             +T  E+ +++      G +WA IA + P RTD  IKN W T   K    
Sbjct: 63  TPWTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVTISNKLGIP 113

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score =  175 bits (447), Expect = 8e-55
 Identities = 45/106 (42%), Positives = 68/106 (64%), Gaps = 1/106 (0%)

Query: 11  GVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNF 70
            + KGPWT EED  ++  +Q++GP  W  +  +    R  K CR RW N+L P +K+ ++
Sbjct: 55  ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSW 113

Query: 71  TDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKL 116
           T+ E+++I      LGNRWA IA  LP RTDN IKN+WN+ +++K+
Sbjct: 114 TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score =  121 bits (306), Expect = 6e-34
 Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 2/109 (1%)

Query: 11  GVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNF 70
            + K  WT EED  L   ++++G  +W+ +       R    C+ RW   L P + +G +
Sbjct: 3   HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPW 61

Query: 71  TDHEEKMIIHLQALLG-NRWAAIASYLPQRTDNDIKNYWNTHLKKKLKK 118
           T  E++ +I L    G  RW+ IA +L  R     +  W+ HL  ++KK
Sbjct: 62  TKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKK 110

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Length = 107

 Score =  172 bits (438), Expect = 4e-54
 Identities = 29/108 (26%), Positives = 54/108 (50%), Gaps = 1/108 (0%)

Query: 14  KGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDH 73
           K  +T EED+ L   +  +G  +W  +       R  + CR RW NY+ P ++   ++  
Sbjct: 1   KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMIT-RNPRQCRERWNNYINPALRTDPWSPE 59

Query: 74  EEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQT 121
           E+ ++    A  G +W  I+ +L  R+DN+I+N W    + + K  ++
Sbjct: 60  EDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHRAKHQKS 107

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Length = 52

 Score = 99.5 bits (249), Expect = 8e-27
 Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 12 VKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRP 63
          + KGPWT EED  L+  +Q++GP  W  +  +    R  K CR RW N+L P
Sbjct: 1  LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNP 51

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 92.0 bits (229), Expect = 9e-24
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 11 GVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNF 70
            K G W   ED IL + + ++G   W  + +     + +K C+ RW  +L P IK+  +
Sbjct: 6  SGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWLDPSIKKTEW 64

Query: 71 TDHEE 75
          +    
Sbjct: 65 SGPSS 69

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52

 Score = 80.7 bits (200), Expect = 9e-20
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 12 VKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRP 63
          + K  WT EED  L   ++++G  +W+ +       R    C+ RW   L P
Sbjct: 1  LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNP 51

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60

 Score = 70.0 bits (172), Expect = 9e-16
 Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 9/55 (16%)

Query: 13 KKGPWTPEEDIILVSYIQEHGPGNW----RSVPTNTGLLRCSKSCRLRWTNYLRP 63
           K  WT EED  L + +++ G  +W       P      R  + C+ RW   L  
Sbjct: 7  GKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPN-----RTDQQCQYRWLRVLSG 56

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53

 Score = 56.2 bits (136), Expect = 6e-11
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 13 KKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLL-RCSKSCRLRWTNYLR 62
          K+  W  EED  L S ++++G GNW  +  +     R S   + RW    +
Sbjct: 1  KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53

 Score = 41.5 bits (98), Expect = 1e-05
 Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 3/53 (5%)

Query: 66  KRGNFTDHEEKMIIHLQALLGN-RWAAIASYLP--QRTDNDIKNYWNTHLKKK 115
           KR  +   E+K +       G   W+ I  +     RT   +K+ W T  K K
Sbjct: 1   KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLK 53

>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55

 Score = 51.6 bits (124), Expect = 2e-09
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 13 KKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLL-RCSKSCRLRWTNYLRPGI 65
          KK  WT EE   + + +Q++G GNW ++  N   + R +   + RW    R G+
Sbjct: 1  KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54

>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55

 Score = 41.5 bits (98), Expect = 9e-06
 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 66  KRGNFTDHEEKMIIHLQALLGN-RWAAIASYLP--QRTDNDIKNYWNTHLKKKL 116
           K+  +T  E + +       G   WAAI+   P   RT   IK+ W T  +  +
Sbjct: 1   KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54

>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1xg1_A 1vfc_A Length = 64

 Score = 51.6 bits (124), Expect = 4e-09
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 13 KKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLL-RCSKSCRLRWTNYLRPGI 65
          KK  WT EE   + + +Q++G GNW ++  N   + R +   + RW    R G+
Sbjct: 10 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 50.2 bits (120), Expect = 1e-08
 Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 3/58 (5%)

Query: 12 VKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGN 69
           KK  W+ EE+  L+   +   P  WR++    G  R +  C   +   L    +R +
Sbjct: 7  GKKTEWSREEEEKLLHLAKLM-PTQWRTIAPIIG--RTAAQCLEHYEFLLDKAAQRDS 61

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 45.2 bits (107), Expect = 7e-07
 Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 1/63 (1%)

Query: 63  PGIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQTG 122
              K+  ++  EE+ ++HL  L+  +W  IA  +  RT      ++   L K  ++    
Sbjct: 5   SSGKKTEWSREEEEKLLHLAKLMPTQWRTIAPII-GRTAAQCLEHYEFLLDKAAQRDSGP 63

Query: 123 SDG 125
           S G
Sbjct: 64  SSG 66

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Length = 69

 Score = 47.9 bits (114), Expect = 8e-08
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 4/64 (6%)

Query: 13 KKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLL-RCSKSCRLRWTNYLRPGIKRGNFT 71
          K+  W  EED  L S ++++G GNW  +  +     R S   + RW    +  +     +
Sbjct: 9  KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLIS---S 65

Query: 72 DHEE 75
          D E+
Sbjct: 66 DSED 69

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Length = 105

 Score = 48.5 bits (115), Expect = 1e-07
 Identities = 15/87 (17%), Positives = 29/87 (33%), Gaps = 9/87 (10%)

Query: 13 KKGPWTPEEDIILVSYIQEHGPGNWRSV---PTNTGLLRCSKSCRLRWTNYLR-----PG 64
           + P++  E   LV  +++ G G WR V          R     + +W   +      P 
Sbjct: 12 IRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQ 71

Query: 65 IKRGNFTDHEEKM-IIHLQALLGNRWA 90
           +RG     E    +++       +  
Sbjct: 72 QRRGEPVPQELLNRVLNAHGYWTQQQM 98

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60

 Score = 45.0 bits (107), Expect = 6e-07
 Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 1/52 (1%)

Query: 13 KKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPG 64
              WT +E++ L+  + + G GNW+ V       +  + C   +  Y    
Sbjct: 7  GDPSWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKYFSGP 57

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Length = 122

 Score = 45.9 bits (108), Expect = 1e-06
 Identities = 18/88 (20%), Positives = 30/88 (34%), Gaps = 9/88 (10%)

Query: 13  KKGPWTPEEDIILVSYIQEHGPGNWRSV---PTNTGLLRCSKSCRLRWTNYLR-----PG 64
            + P+T  E  +LV  ++  G G WR V          R     + +W   +      P 
Sbjct: 30  IRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQ 89

Query: 65  IKRGNFTDHEEKM-IIHLQALLGNRWAA 91
            +RG     E    ++  QA      + 
Sbjct: 90  QRRGAPVPQELLDRVLAAQAYWSVDSSG 117

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Length = 83

 Score = 43.0 bits (101), Expect = 5e-06
 Identities = 16/87 (18%), Positives = 31/87 (35%), Gaps = 8/87 (9%)

Query: 16 PWTPEEDIILVSYIQEHGPGNWRSV---PTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTD 72
          P++  E   LV  ++  G G WR V     +    R     + +W   +           
Sbjct: 2  PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS-----IA 56

Query: 73 HEEKMIIHLQALLGNRWAAIASYLPQR 99
           +++    +   L +R  A  +Y  Q+
Sbjct: 57 PQQRRGEPVPQDLLDRVLAAHAYWSQQ 83

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Length = 121

 Score = 44.0 bits (103), Expect = 7e-06
 Identities = 15/87 (17%), Positives = 29/87 (33%), Gaps = 9/87 (10%)

Query: 13  KKGPWTPEEDIILVSYIQEHGPGNWRSV---PTNTGLLRCSKSCRLRWTNYLR-----PG 64
            + P++  E   LV  ++  G G WR V     +    R     + +W   +      P 
Sbjct: 16  IRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQ 75

Query: 65  IKRGNFTDHE-EKMIIHLQALLGNRWA 90
            +RG     +    ++   A    +  
Sbjct: 76  QRRGEPVPQDLLDRVLAAHAYWSQQQG 102

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Length = 89

 Score = 43.0 bits (101), Expect = 8e-06
 Identities = 13/87 (14%), Positives = 30/87 (34%), Gaps = 1/87 (1%)

Query: 54  RLRWTNYLRPGIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLK 113
                +  R  +    +T+ E           G  W+AIA  +  +T +  KN++  + K
Sbjct: 3   HHHHHSSGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKK 62

Query: 114 K-KLKKLQTGSDGGQNNQDGFSSTSQQ 139
           +  L ++          +       ++
Sbjct: 63  RQNLDEILQQHKLKMEKERNARRKKKK 89

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Length = 58

 Score = 41.7 bits (98), Expect = 8e-06
 Identities = 11/44 (25%), Positives = 20/44 (45%)

Query: 17 WTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNY 60
          W  +E+++L+   +  G GNW  +    G  R  + CR  +   
Sbjct: 12 WGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKT 55

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Length = 73

 Score = 38.4 bits (89), Expect = 2e-04
 Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 3/45 (6%)

Query: 13 KKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRW 57
            G +TPEE   L     +HG  +W ++    G  R + S + R 
Sbjct: 22 HVGKYTPEEIEKLKELRIKHG-NDWATIGAALG--RSASSVKDRC 63

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72

 Score = 38.2 bits (89), Expect = 3e-04
 Identities = 14/52 (26%), Positives = 24/52 (46%)

Query: 66  KRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLK 117
               +T  E+++     A  G RW  I+  +  RT   +K+Y   + K K+K
Sbjct: 8   YSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVK 59

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	343
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	100.0
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	100.0
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	100.0
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	100.0
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	99.98
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.97
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.96
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.84
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	99.83
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.73
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.71
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.71
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.68
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.68
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.67
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.67
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.66
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.66
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.65
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.65
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.64
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.61
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.6
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.6
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.59
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.57
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.56
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.56
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.54
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.53
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.53
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.52
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.52
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.51
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.5
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	99.2
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.46
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	99.42
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	99.41
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.4
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.38
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.38
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	99.38
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.35
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	99.32
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.32
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.3
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	98.92
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.26
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.24
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.22
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.22
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	99.19
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.18
2cjj_A	93	Radialis; plant development, DNA-binding protein,	99.18
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.12
2cjj_A	93	Radialis; plant development, DNA-binding protein,	98.93
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	98.93
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	98.92
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.81
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	98.71
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	98.67
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.63
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	98.47
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.46
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	98.43
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	98.38
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	98.35
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.24
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	98.23
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	98.15
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	98.08
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	98.02
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	97.1
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	97.86
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	97.82
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	97.75
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	97.59
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	97.52
2crg_A	70	Metastasis associated protein MTA3; transcription	97.48
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	97.39
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	97.2
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	97.11
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	96.96
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	96.89
2y9y_A	374	Imitation switch protein 1 (DEL_ATPase); transcrip	96.87
2crg_A	70	Metastasis associated protein MTA3; transcription	96.82
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	96.47
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	96.1
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	95.02
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	94.09
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	93.45
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	93.22
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	93.01
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	87.92
2xb0_X	270	Chromo domain-containing protein 1; hydrolase, DNA	87.26

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=100.00  E-value=4.2e-34  Score=234.00  Aligned_cols=105  Identities=43%  Similarity=0.847  Sum_probs=99.7

Q ss_pred             CCccCCCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhcccCCCccCCCChHHHHHHHHHHHHhCCcHH
Q 019307           11 GVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDHEEKMIIHLQALLGNRWA   90 (343)
Q Consensus        11 ~ikKG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~ikrg~WT~EED~~Ll~lv~~~GnkWs   90 (343)
                      .+++|+||+|||++|+++|++||.++|..||..|+ +|+++||++||.++|+|.+++++||+|||.+|+++|.+||++|.
T Consensus         1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~   79 (105)
T 1gv2_A            1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWA   79 (105)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhc-CCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHH
Confidence            47899999999999999999999889999999998 99999999999999999999999999999999999999999999


Q ss_pred             HHHhhCCCCChHHHHHHHHHHhHHHH
Q 019307           91 AIASYLPQRTDNDIKNYWNTHLKKKL  116 (343)
Q Consensus        91 ~IA~~LpgRT~~qcKnRW~~~Lkkkl  116 (343)
                      .||++|||||++||++||+.++++++
T Consensus        80 ~Ia~~l~gRt~~~~k~rw~~~~~~~~  105 (105)
T 1gv2_A           80 EIAKLLPGRTDNAIKNHWNSTMRRKV  105 (105)
T ss_dssp             HHHTTCTTCCHHHHHHHHHHHTC---
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHhccC
Confidence            99999999999999999999998764

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=100.00  E-value=8.5e-34  Score=240.21  Aligned_cols=106  Identities=42%  Similarity=0.836  Sum_probs=101.8

Q ss_pred             CCCccCCCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhcccCCCccCCCChHHHHHHHHHHHHhCCcH
Q 019307           10 IGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDHEEKMIIHLQALLGNRW   89 (343)
Q Consensus        10 ~~ikKG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~ikrg~WT~EED~~Ll~lv~~~GnkW   89 (343)
                      |.+++|+||+|||++|+++|++||.++|..||..|+ +|++.||++||.++|+|.+++++||+|||.+|++++.+||++|
T Consensus        23 p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~G~~W  101 (128)
T 1h8a_C           23 PELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRW  101 (128)
T ss_dssp             TTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSS-SCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHHHHHCSCH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhc-CCcHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHCcCH
Confidence            788999999999999999999999889999999998 9999999999999999999999999999999999999999999


Q ss_pred             HHHHhhCCCCChHHHHHHHHHHhHHHH
Q 019307           90 AAIASYLPQRTDNDIKNYWNTHLKKKL  116 (343)
Q Consensus        90 s~IA~~LpgRT~~qcKnRW~~~Lkkkl  116 (343)
                      ..||++|||||+++|++||+.++++++
T Consensus       102 ~~Ia~~l~gRt~~~~k~r~~~~~~~~~  128 (128)
T 1h8a_C          102 AEIAKLLPGRTDNAVKNHWNSTMRRKV  128 (128)
T ss_dssp             HHHGGGSTTCCHHHHHHHHHTTTTC--
T ss_pred             HHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence            999999999999999999999988753

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=100.00  E-value=1.4e-33  Score=232.57  Aligned_cols=103  Identities=28%  Similarity=0.605  Sum_probs=99.6

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhcccCCCccCCCChHHHHHHHHHHHHhCCcHHHHH
Q 019307           14 KGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDHEEKMIIHLQALLGNRWAAIA   93 (343)
Q Consensus        14 KG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~ikrg~WT~EED~~Ll~lv~~~GnkWs~IA   93 (343)
                      ||+||+|||++|+++|.+||.++|..||..|+ +|+++||++||.++|+|.+++++||+|||.+|+++|.+||++|..||
T Consensus         1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia   79 (107)
T 2k9n_A            1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMI-TRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKIS   79 (107)
T ss_dssp             CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTT-TSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcC-CCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHH
Confidence            68999999999999999999889999999998 99999999999999999999999999999999999999999999999


Q ss_pred             hhCCCCChHHHHHHHHHHhHHHHh
Q 019307           94 SYLPQRTDNDIKNYWNTHLKKKLK  117 (343)
Q Consensus        94 ~~LpgRT~~qcKnRW~~~Lkkklk  117 (343)
                      ++|||||+++||+||+.++++..+
T Consensus        80 ~~l~gRt~~~~k~rw~~l~r~~~~  103 (107)
T 2k9n_A           80 KFLKNRSDNNIRNRWMMIARHRAK  103 (107)
T ss_dssp             HHHSSSCHHHHHHHHHHHHHHHHS
T ss_pred             HHCCCCCHHHHHHHHHHHHhhHHH
Confidence            999999999999999998887554

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=100.00  E-value=2.4e-33  Score=238.79  Aligned_cols=108  Identities=37%  Similarity=0.730  Sum_probs=103.2

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhcccCCCccCCCChHHHHHHHHHHHHhCCcHHHHH
Q 019307           14 KGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDHEEKMIIHLQALLGNRWAAIA   93 (343)
Q Consensus        14 KG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~ikrg~WT~EED~~Ll~lv~~~GnkWs~IA   93 (343)
                      ||+||+|||++|+++|..||.++|..||..|+ +|+++||++||.++|+|.+++++||+|||.+|+++|.+||++|..||
T Consensus         2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia   80 (131)
T 3zqc_A            2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIA   80 (131)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCT-TSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHC-CCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHH
Confidence            79999999999999999999999999999998 99999999999999999999999999999999999999999999999


Q ss_pred             hhCCCCChHHHHHHHHHHhHHHHhhhcCC
Q 019307           94 SYLPQRTDNDIKNYWNTHLKKKLKKLQTG  122 (343)
Q Consensus        94 ~~LpgRT~~qcKnRW~~~Lkkklkk~q~~  122 (343)
                      .+|||||+++|++||+.+|++++.....+
T Consensus        81 ~~l~gRt~~~~k~rw~~~l~~~~~~~~~~  109 (131)
T 3zqc_A           81 KLIPGRTDNAIKNRWNSSISKRISTNSNH  109 (131)
T ss_dssp             TTSTTCCHHHHHHHHHHTTGGGCCCCTTS
T ss_pred             HHcCCCCHHHHHHHHHHHHHHHhhcCCCc
Confidence            99999999999999999999987654433

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=99.98  E-value=8.6e-33  Score=234.13  Aligned_cols=105  Identities=36%  Similarity=0.692  Sum_probs=100.7

Q ss_pred             CCCCCccCCCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhcccCCCccCCCChHHHHHHHHHHHHhCC
Q 019307            8 DKIGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDHEEKMIIHLQALLGN   87 (343)
Q Consensus         8 dK~~ikKG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~ikrg~WT~EED~~Ll~lv~~~Gn   87 (343)
                      .+...++|+||+|||++|+++|.+||. +|..||..|+ +|+++||++||.++|+|.+++++||+|||++|+++|.+||+
T Consensus         5 ~~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~   82 (126)
T 3osg_A            5 NLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFP-NRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGR   82 (126)
T ss_dssp             C-CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCT-TCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcC-CCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCc
Confidence            356889999999999999999999996 9999999998 99999999999999999999999999999999999999999


Q ss_pred             cHHHHHhhCCCCChHHHHHHHHHHhHH
Q 019307           88 RWAAIASYLPQRTDNDIKNYWNTHLKK  114 (343)
Q Consensus        88 kWs~IA~~LpgRT~~qcKnRW~~~Lkk  114 (343)
                      +|..||++|||||+++||+||+.++++
T Consensus        83 ~W~~Ia~~l~gRt~~~~k~rw~~l~~k  109 (126)
T 3osg_A           83 QWAIIAKFFPGRTDIHIKNRWVTISNK  109 (126)
T ss_dssp             CHHHHHTTSTTCCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence            999999999999999999999998876

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.97  E-value=6.7e-31  Score=229.70  Aligned_cols=107  Identities=42%  Similarity=0.826  Sum_probs=102.1

Q ss_pred             CCCCccCCCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhcccCCCccCCCChHHHHHHHHHHHHhCCc
Q 019307            9 KIGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDHEEKMIIHLQALLGNR   88 (343)
Q Consensus         9 K~~ikKG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~ikrg~WT~EED~~Ll~lv~~~Gnk   88 (343)
                      .|.+++|+||+|||++|+++|++||.++|..||..|+ +|++.||++||.++|+|.+++++||+|||.+|++++.+||++
T Consensus        53 ~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~~  131 (159)
T 1h89_C           53 NPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNR  131 (159)
T ss_dssp             CTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTST-TCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCSC
T ss_pred             CCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcC-CCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCCC
Confidence            3789999999999999999999999889999999998 999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCCChHHHHHHHHHHhHHHH
Q 019307           89 WAAIASYLPQRTDNDIKNYWNTHLKKKL  116 (343)
Q Consensus        89 Ws~IA~~LpgRT~~qcKnRW~~~Lkkkl  116 (343)
                      |..||++|||||+++|++||+.++++++
T Consensus       132 W~~Ia~~l~gRt~~~~knr~~~~~r~~~  159 (159)
T 1h89_C          132 WAEIAKLLPGRTDNAIKNHWNSTMRRKV  159 (159)
T ss_dssp             HHHHHTTSTTCCHHHHHHHHHTTTCC--
T ss_pred             HHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence            9999999999999999999999988754

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.96  E-value=1.2e-30  Score=228.07  Aligned_cols=111  Identities=29%  Similarity=0.600  Sum_probs=66.4

Q ss_pred             CccCCCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhcccCCCccCCCChHHHHHHHHHHHHhCC-cHH
Q 019307           12 VKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDHEEKMIIHLQALLGN-RWA   90 (343)
Q Consensus        12 ikKG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~ikrg~WT~EED~~Ll~lv~~~Gn-kWs   90 (343)
                      +++++||+|||++|+++|.+||.++|..||..|+ +|+++||++||.++|+|.+++++||+|||.+|+++|.+||. +|.
T Consensus         4 ~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~   82 (159)
T 1h89_C            4 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWS   82 (159)
T ss_dssp             ----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccHH
Confidence            5799999999999999999999889999999998 99999999999999999999999999999999999999995 799


Q ss_pred             HHHhhCCCCChHHHHHHHHHHhHHHHhhhcCCC
Q 019307           91 AIASYLPQRTDNDIKNYWNTHLKKKLKKLQTGS  123 (343)
Q Consensus        91 ~IA~~LpgRT~~qcKnRW~~~Lkkklkk~q~~~  123 (343)
                      .||.+|||||++||++||+++|++.+++...+.
T Consensus        83 ~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~  115 (159)
T 1h89_C           83 VIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTE  115 (159)
T ss_dssp             HHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCH
T ss_pred             HHHHHcCCCCHHHHHHHHHHHhCccccccCCCh
Confidence            999999999999999999999988765554443

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.84  E-value=4.4e-22  Score=152.53  Aligned_cols=66  Identities=26%  Similarity=0.567  Sum_probs=64.0

Q ss_pred             CCCCccCCCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhcccCCCccCCCChHHH
Q 019307            9 KIGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDHEE   75 (343)
Q Consensus         9 K~~ikKG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~ikrg~WT~EED   75 (343)
                      .+.+++|+||+|||++|+++|.+||.++|..||..|+ +|+++||++||.++|+|.+++++||+|||
T Consensus         4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd   69 (70)
T 2dim_A            4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWLDPSIKKTEWSGPSS   69 (70)
T ss_dssp             CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHST-TCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhc-CCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence            4689999999999999999999999889999999999 99999999999999999999999999998

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=99.83  E-value=6.6e-22  Score=167.17  Aligned_cols=84  Identities=26%  Similarity=0.545  Sum_probs=57.1

Q ss_pred             ecccCCCCCChhhhhhhhhhcccCCCccCCCChHHHHHHHHHHHHhCC-cHHHHHhhCCCCChHHHHHHHHHHhHHHHhh
Q 019307           40 VPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDHEEKMIIHLQALLGN-RWAAIASYLPQRTDNDIKNYWNTHLKKKLKK  118 (343)
Q Consensus        40 IA~~l~~~Rt~kQCR~RW~n~L~P~ikrg~WT~EED~~Ll~lv~~~Gn-kWs~IA~~LpgRT~~qcKnRW~~~Lkkklkk  118 (343)
                      ||+.|+ +|++.||++||.++|+|.+++++||+|||++|+++|.+||. +|..||.+|||||+.||++||+++|.+.+++
T Consensus         1 Ia~~~~-~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~   79 (128)
T 1h8a_C            1 MEAVIK-NRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKK   79 (128)
T ss_dssp             ----------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCC
T ss_pred             CccccC-CCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhccccccc
Confidence            788898 99999999999999999999999999999999999999995 7999999999999999999999999887665


Q ss_pred             hcCCCC
Q 019307          119 LQTGSD  124 (343)
Q Consensus       119 ~q~~~~  124 (343)
                      ...+.+
T Consensus        80 ~~WT~e   85 (128)
T 1h8a_C           80 TSWTEE   85 (128)
T ss_dssp             SCCCHH
T ss_pred             ccCCHH
Confidence            555443

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.73  E-value=4.2e-18  Score=158.54  Aligned_cols=105  Identities=15%  Similarity=0.243  Sum_probs=91.8

Q ss_pred             CCCccCCCCHHHHHHHHHHHHHhCCCC-----CceecccCCCCCChhhhhhhhhhcccCCCc------------------
Q 019307           10 IGVKKGPWTPEEDIILVSYIQEHGPGN-----WRSVPTNTGLLRCSKSCRLRWTNYLRPGIK------------------   66 (343)
Q Consensus        10 ~~ikKG~WT~EEDe~L~~lV~~~G~~n-----W~~IA~~l~~~Rt~kQCR~RW~n~L~P~ik------------------   66 (343)
                      ..+++++||+|||++|+++|+++|..+     |..||+.|+ |||+.|||.||.++|.+.+.                  
T Consensus         4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~Lp-GRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~Gn   82 (246)
T 1ign_A            4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGN   82 (246)
T ss_dssp             ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST-TSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSC
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcC-CCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCCC
Confidence            467899999999999999999998542     999999999 99999999999999999886                  


Q ss_pred             -----------cCCCChHHHHHHHHHHHH-h--------------------------------C----------------
Q 019307           67 -----------RGNFTDHEEKMIIHLQAL-L--------------------------------G----------------   86 (343)
Q Consensus        67 -----------rg~WT~EED~~Ll~lv~~-~--------------------------------G----------------   86 (343)
                                 +..||.+||-.|+..+.+ |                                +                
T Consensus        83 ~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~  162 (246)
T 1ign_A           83 LIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYRT  162 (246)
T ss_dssp             BCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------CC
T ss_pred             ceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhcc
Confidence                       789999999999998876 1                                1                


Q ss_pred             ---------CcHHHHHhhCCCCChHHHHHHHHHHhHHH
Q 019307           87 ---------NRWAAIASYLPQRTDNDIKNYWNTHLKKK  115 (343)
Q Consensus        87 ---------nkWs~IA~~LpgRT~~qcKnRW~~~Lkkk  115 (343)
                               ..|..||+.+|+||.+.+|+||..+|+..
T Consensus       163 ~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~  200 (246)
T 1ign_A          163 QSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY  200 (246)
T ss_dssp             CCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred             ccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence                     16999999999999999999999888664

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.71  E-value=1.4e-17  Score=126.03  Aligned_cols=61  Identities=21%  Similarity=0.334  Sum_probs=57.5

Q ss_pred             cccCCCccCCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCChHHHHHHHHHHhHHHHhhhcC
Q 019307           60 YLRPGIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQT  121 (343)
Q Consensus        60 ~L~P~ikrg~WT~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkkklkk~q~  121 (343)
                      +|+|.+++++||+|||++|++++++||++|..||. |+|||++|||+||+.+|++.+++...
T Consensus         2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~~   62 (66)
T 2din_A            2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDSG   62 (66)
T ss_dssp             CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSSC
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCCC
Confidence            79999999999999999999999999999999999 88999999999999999999876543

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.71  E-value=5.4e-18  Score=132.06  Aligned_cols=57  Identities=21%  Similarity=0.289  Sum_probs=46.8

Q ss_pred             hhhhhhcccCCCccCCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCChHHHHHHHHHH
Q 019307           54 RLRWTNYLRPGIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTH  111 (343)
Q Consensus        54 R~RW~n~L~P~ikrg~WT~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~  111 (343)
                      --||.++|+|++++++||+|||++|+++|.+||++|+.||++| |||++|||+||+.+
T Consensus        10 ~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L   66 (73)
T 2llk_A           10 GRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLM   66 (73)
T ss_dssp             ---------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHC
T ss_pred             CcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHH
Confidence            4589999999999999999999999999999999999999999 99999999999864

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.68  E-value=1.1e-17  Score=124.22  Aligned_cols=57  Identities=25%  Similarity=0.470  Sum_probs=54.2

Q ss_pred             CCCCccCCCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhcccCCCc
Q 019307            9 KIGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIK   66 (343)
Q Consensus         9 K~~ikKG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~ik   66 (343)
                      .|.+++++||+|||++|+++|.+||.++|..||..|+ +|+..||++||.++|+|.++
T Consensus         3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~i~   59 (60)
T 2d9a_A            3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFP-NRTDQQCQYRWLRVLSGPSS   59 (60)
T ss_dssp             SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCS-SSCHHHHHHHHHHTSCSSSC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcc-CCCHHHHHHHHHHHcCCccC
Confidence            3688999999999999999999999889999999998 99999999999999999876

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.68  E-value=1.8e-17  Score=119.87  Aligned_cols=52  Identities=42%  Similarity=0.828  Sum_probs=49.7

Q ss_pred             CccCCCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhcccCC
Q 019307           12 VKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPG   64 (343)
Q Consensus        12 ikKG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~   64 (343)
                      +++|+||+|||++|+++|.+||.++|..||..|+ +|+++||++||.++|+|+
T Consensus         1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~   52 (52)
T 1gvd_A            1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence            5799999999999999999999879999999998 999999999999999984

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.67  E-value=9.6e-18  Score=142.14  Aligned_cols=82  Identities=18%  Similarity=0.340  Sum_probs=76.8

Q ss_pred             CCCCccCCCCHHHHHHHHHHHHHhCCCCCceecccC----CCCCChhhhhhhhhhccc-----CCCccC-CCChHHHHHH
Q 019307            9 KIGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNT----GLLRCSKSCRLRWTNYLR-----PGIKRG-NFTDHEEKMI   78 (343)
Q Consensus         9 K~~ikKG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l----~~~Rt~kQCR~RW~n~L~-----P~ikrg-~WT~EED~~L   78 (343)
                      ++..++++||+|||+.|+++|++||.++|..|+..+    + +|+..+|++||.++|+     |.++++ +|+++|+.+|
T Consensus        12 ~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~-~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~rv   90 (121)
T 2juh_A           12 SQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRV   90 (121)
T ss_dssp             CCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCS-SCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHHH
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccC-CCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHHH
Confidence            457889999999999999999999988999999874    5 8999999999999998     999999 9999999999


Q ss_pred             HHHHHHhCCcHHH
Q 019307           79 IHLQALLGNRWAA   91 (343)
Q Consensus        79 l~lv~~~GnkWs~   91 (343)
                      +.++..+||+|.+
T Consensus        91 ~~~h~~~gn~~~~  103 (121)
T 2juh_A           91 LAAHAYWSQQQGK  103 (121)
T ss_dssp             HHHHHHHHHHHCC
T ss_pred             HHHHHHHccchhc
Confidence            9999999999976

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.67  E-value=9.4e-17  Score=123.67  Aligned_cols=58  Identities=24%  Similarity=0.297  Sum_probs=55.5

Q ss_pred             ccCCCccCCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCChHHHHHHHHHHhHHHHhh
Q 019307           61 LRPGIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKK  118 (343)
Q Consensus        61 L~P~ikrg~WT~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkkklkk  118 (343)
                      ++|.+++++||+|||++|+++|.+||++|..||.+|||||++|||+||+.++++.++.
T Consensus         3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~   60 (72)
T 2cu7_A            3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC   60 (72)
T ss_dssp             CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred             CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence            5789999999999999999999999999999999999999999999999999998765

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.66  E-value=3e-17  Score=118.54  Aligned_cols=52  Identities=29%  Similarity=0.644  Sum_probs=48.4

Q ss_pred             CccCCCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhcccCC
Q 019307           12 VKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPG   64 (343)
Q Consensus        12 ikKG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~   64 (343)
                      +++++||+|||++|+++|.+||.++|..||..|+ +|++.||++||.++|+|+
T Consensus         1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~   52 (52)
T 1guu_A            1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE   52 (52)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTST-TCCHHHHHHHHHHHHSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence            5799999999999999999999889999999998 999999999999999984

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.66  E-value=7.6e-17  Score=123.34  Aligned_cols=65  Identities=23%  Similarity=0.410  Sum_probs=60.4

Q ss_pred             cCCCccCCCChHHHHHHHHHHHHhC-CcHHHHHhhCCCCChHHHHHHHHHHhHHHHhhhcCCCCCC
Q 019307           62 RPGIKRGNFTDHEEKMIIHLQALLG-NRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQTGSDGG  126 (343)
Q Consensus        62 ~P~ikrg~WT~EED~~Ll~lv~~~G-nkWs~IA~~LpgRT~~qcKnRW~~~Lkkklkk~q~~~~~~  126 (343)
                      .|.+++++||+|||++|+++|.+|| ++|..||.+|++||+.|||+||+++|++.+++..++.+++
T Consensus         4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd   69 (70)
T 2dim_A            4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSS   69 (70)
T ss_dssp             CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence            4788999999999999999999999 7999999999999999999999999999999888776653

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.65  E-value=5.9e-17  Score=137.50  Aligned_cols=78  Identities=23%  Similarity=0.365  Sum_probs=72.2

Q ss_pred             CCCccCCCCHHHHHHHHHHHHHhCCCCCceecccC----CCCCChhhhhhhhhhcc-----cCCCccCCCChHH-HHHHH
Q 019307           10 IGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNT----GLLRCSKSCRLRWTNYL-----RPGIKRGNFTDHE-EKMII   79 (343)
Q Consensus        10 ~~ikKG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l----~~~Rt~kQCR~RW~n~L-----~P~ikrg~WT~EE-D~~Ll   79 (343)
                      ...++++||+|||+.|+++|++||.++|..|+..+    + +|+..+|++||.|++     +|.++++.|+++| +.+|+
T Consensus        27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~-~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v~  105 (122)
T 2roh_A           27 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVH-HRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRVL  105 (122)
T ss_dssp             CCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSC-CCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccC-CCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHHH
Confidence            45778999999999999999999999999999863    5 899999999999999     7999999999999 89999


Q ss_pred             HHHHHhCCc
Q 019307           80 HLQALLGNR   88 (343)
Q Consensus        80 ~lv~~~Gnk   88 (343)
                      .++..||++
T Consensus       106 ~~h~~~g~~  114 (122)
T 2roh_A          106 AAQAYWSVD  114 (122)
T ss_dssp             HHHHHHHSS
T ss_pred             HHHHHHhhH
Confidence            999999975

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.65  E-value=5.6e-17  Score=123.87  Aligned_cols=63  Identities=24%  Similarity=0.344  Sum_probs=58.4

Q ss_pred             CCCCccCCCCHHHHHHHHHHHHHhCCCCCceecccCCC-CCChhhhhhhhhhcccCCCccCCCC
Q 019307            9 KIGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGL-LRCSKSCRLRWTNYLRPGIKRGNFT   71 (343)
Q Consensus         9 K~~ikKG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~-~Rt~kQCR~RW~n~L~P~ikrg~WT   71 (343)
                      ++..++++||+|||++|+++|++||.++|..||..|++ +|++.||++||.++|+|.+.++...
T Consensus         5 ~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~   68 (69)
T 1ity_A            5 HRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE   68 (69)
T ss_dssp             TCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            46788999999999999999999998899999999986 8999999999999999999987764

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.64  E-value=8.8e-17  Score=119.39  Aligned_cols=55  Identities=24%  Similarity=0.396  Sum_probs=52.2

Q ss_pred             cCCCccCCCChHHHHHHHHHHHHhC-CcHHHHHhhCCCCChHHHHHHHHHHhHHHH
Q 019307           62 RPGIKRGNFTDHEEKMIIHLQALLG-NRWAAIASYLPQRTDNDIKNYWNTHLKKKL  116 (343)
Q Consensus        62 ~P~ikrg~WT~EED~~Ll~lv~~~G-nkWs~IA~~LpgRT~~qcKnRW~~~Lkkkl  116 (343)
                      +|.+++++||+|||++|+++|.+|| ++|..||.+|++||+.|||+||+++|++.+
T Consensus         3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i   58 (60)
T 2d9a_A            3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPS   58 (60)
T ss_dssp             SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCcc
Confidence            5789999999999999999999999 699999999999999999999999998865

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.61  E-value=4.7e-16  Score=112.22  Aligned_cols=50  Identities=30%  Similarity=0.606  Sum_probs=46.6

Q ss_pred             CccCCCChHHHHHHHHHHHHhCC-cHHHHHhhCCCCChHHHHHHHHHHhHH
Q 019307           65 IKRGNFTDHEEKMIIHLQALLGN-RWAAIASYLPQRTDNDIKNYWNTHLKK  114 (343)
Q Consensus        65 ikrg~WT~EED~~Ll~lv~~~Gn-kWs~IA~~LpgRT~~qcKnRW~~~Lkk  114 (343)
                      +++++||+|||++|+++|.+||. +|..||.+|+|||+.||++||+++|+|
T Consensus         1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   51 (52)
T 1guu_A            1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP   51 (52)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence            47899999999999999999997 999999999999999999999999876

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.60  E-value=2.2e-16  Score=119.75  Aligned_cols=56  Identities=30%  Similarity=0.498  Sum_probs=49.9

Q ss_pred             CCccCCCCHHHHHHHHHHHHHhCCCCCceecccCCC-CCChhhhhhhhhhcccCCCc
Q 019307           11 GVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGL-LRCSKSCRLRWTNYLRPGIK   66 (343)
Q Consensus        11 ~ikKG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~-~Rt~kQCR~RW~n~L~P~ik   66 (343)
                      ..+|++||+|||++|+++|++||.++|..||+.+++ +|++.||++||.++++|+++
T Consensus         8 ~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN   64 (64)
T 3sjm_A            8 ITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN   64 (64)
T ss_dssp             --CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence            457999999999999999999999999999987652 79999999999999998874

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.60  E-value=1.1e-15  Score=116.69  Aligned_cols=60  Identities=25%  Similarity=0.243  Sum_probs=55.1

Q ss_pred             cccCCCccCCCChHHHHHHHHHHHHhC-CcHHHHHhhCC--CCChHHHHHHHHHHhHHHHhhh
Q 019307           60 YLRPGIKRGNFTDHEEKMIIHLQALLG-NRWAAIASYLP--QRTDNDIKNYWNTHLKKKLKKL  119 (343)
Q Consensus        60 ~L~P~ikrg~WT~EED~~Ll~lv~~~G-nkWs~IA~~Lp--gRT~~qcKnRW~~~Lkkklkk~  119 (343)
                      ...|..++++||+|||++|+++|.+|| ++|..||.+|+  +||+.|||+||+++|++.+.+.
T Consensus         3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~   65 (69)
T 1ity_A            3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISS   65 (69)
T ss_dssp             CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCC
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCC
Confidence            356778899999999999999999999 69999999999  9999999999999999987653

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.59  E-value=8.1e-16  Score=111.08  Aligned_cols=50  Identities=30%  Similarity=0.634  Sum_probs=47.3

Q ss_pred             CccCCCChHHHHHHHHHHHHhCC-cHHHHHhhCCCCChHHHHHHHHHHhHH
Q 019307           65 IKRGNFTDHEEKMIIHLQALLGN-RWAAIASYLPQRTDNDIKNYWNTHLKK  114 (343)
Q Consensus        65 ikrg~WT~EED~~Ll~lv~~~Gn-kWs~IA~~LpgRT~~qcKnRW~~~Lkk  114 (343)
                      +++++||+|||++|+++|.+||. +|..||.+|+|||++|||+||+++|+|
T Consensus         1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   51 (52)
T 1gvd_A            1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP   51 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence            47899999999999999999996 699999999999999999999999875

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.57  E-value=5.9e-16  Score=115.38  Aligned_cols=54  Identities=20%  Similarity=0.509  Sum_probs=51.2

Q ss_pred             CCCccCCCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhcccCC
Q 019307           10 IGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPG   64 (343)
Q Consensus        10 ~~ikKG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~   64 (343)
                      +.+++++||+|||++|+++|++||.++|..||+.|+ +|++.||++||.++|.+.
T Consensus         4 ~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~r~~~~l~~~   57 (60)
T 1x41_A            4 GSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKYFSGP   57 (60)
T ss_dssp             CCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHT-TSCHHHHHHHHHHHTTCS
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhC-CCCHHHHHHHHHHHccCC
Confidence            478999999999999999999999889999999999 999999999999999765

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.56  E-value=3.5e-15  Score=111.16  Aligned_cols=53  Identities=13%  Similarity=0.241  Sum_probs=49.6

Q ss_pred             cCCCccCCCChHHHHHHHHHHHHhC-CcHHHHHhhCCCCChHHHHHHHHHHhHH
Q 019307           62 RPGIKRGNFTDHEEKMIIHLQALLG-NRWAAIASYLPQRTDNDIKNYWNTHLKK  114 (343)
Q Consensus        62 ~P~ikrg~WT~EED~~Ll~lv~~~G-nkWs~IA~~LpgRT~~qcKnRW~~~Lkk  114 (343)
                      .+.+.+++||+|||++|+++|.+|| ++|.+||++|++||+.|||+||+++|.+
T Consensus         3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~   56 (60)
T 1x41_A            3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSG   56 (60)
T ss_dssp             CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence            3678899999999999999999999 7999999999999999999999998764

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.56  E-value=3.8e-15  Score=108.18  Aligned_cols=49  Identities=27%  Similarity=0.324  Sum_probs=46.4

Q ss_pred             ccCCCChHHHHHHHHHHHHhC-CcHHHHHhhCC--CCChHHHHHHHHHHhHH
Q 019307           66 KRGNFTDHEEKMIIHLQALLG-NRWAAIASYLP--QRTDNDIKNYWNTHLKK  114 (343)
Q Consensus        66 krg~WT~EED~~Ll~lv~~~G-nkWs~IA~~Lp--gRT~~qcKnRW~~~Lkk  114 (343)
                      ++++||+|||++|+++|.+|| ++|..||.+|+  +||+.||++||.++++.
T Consensus         1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~   52 (53)
T 1w0t_A            1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL   52 (53)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence            578999999999999999999 69999999999  99999999999999874

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.54  E-value=1.9e-15  Score=109.74  Aligned_cols=50  Identities=30%  Similarity=0.476  Sum_probs=47.0

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCCCCCceecccCCC-CCChhhhhhhhhhccc
Q 019307           13 KKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGL-LRCSKSCRLRWTNYLR   62 (343)
Q Consensus        13 kKG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~-~Rt~kQCR~RW~n~L~   62 (343)
                      ++|+||+|||++|+++|.+||.++|..||..+++ +|++.||++||.++++
T Consensus         1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k   51 (53)
T 1w0t_A            1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (53)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence            5899999999999999999998899999999976 6999999999999875

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.53  E-value=5e-15  Score=114.47  Aligned_cols=57  Identities=23%  Similarity=0.217  Sum_probs=52.8

Q ss_pred             cCCCccCCCChHHHHHHHHHHHHhC------CcHHHHHhhCCCCChHHHHHHHHHHhHHHHhh
Q 019307           62 RPGIKRGNFTDHEEKMIIHLQALLG------NRWAAIASYLPQRTDNDIKNYWNTHLKKKLKK  118 (343)
Q Consensus        62 ~P~ikrg~WT~EED~~Ll~lv~~~G------nkWs~IA~~LpgRT~~qcKnRW~~~Lkkklkk  118 (343)
                      +|.+++++||+|||++|+++|.+||      ++|..||.+|++||++||++||+++|.+.++.
T Consensus         3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~   65 (75)
T 2yum_A            3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKA   65 (75)
T ss_dssp             CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTT
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhc
Confidence            5788999999999999999999999      78999999999999999999999999886543

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.53  E-value=7.9e-16  Score=116.38  Aligned_cols=59  Identities=20%  Similarity=0.331  Sum_probs=53.8

Q ss_pred             CCCCCccCCCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhcccCCCccCC
Q 019307            8 DKIGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGN   69 (343)
Q Consensus         8 dK~~ikKG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~ikrg~   69 (343)
                      -.|.+++++||+|||++|+++|+.||. +|..||. ++ +|++.||++||.++|+|.++++.
T Consensus         3 L~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~-gRt~~qcr~Rw~~~l~~~~~~~~   61 (66)
T 2din_A            3 SGSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-II-GRTAAQCLEHYEFLLDKAAQRDS   61 (66)
T ss_dssp             CSSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HH-SSCHHHHHHHHHHHHHHHHHSSS
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-cc-CcCHHHHHHHHHHHhChHhcCCC
Confidence            367899999999999999999999995 9999999 76 79999999999999999877653

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.52  E-value=1.5e-15  Score=117.51  Aligned_cols=61  Identities=21%  Similarity=0.276  Sum_probs=56.4

Q ss_pred             CCCCccCCCCHHHHHHHHHHHHHhCC-----CCCceecccCCCCCChhhhhhhhhhcccCCCccCCC
Q 019307            9 KIGVKKGPWTPEEDIILVSYIQEHGP-----GNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNF   70 (343)
Q Consensus         9 K~~ikKG~WT~EEDe~L~~lV~~~G~-----~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~ikrg~W   70 (343)
                      +|.+++++||+|||++|+++|.+||.     ++|..||..|+ +|+..||+.||++||.+.++.|..
T Consensus         3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~-~Rt~~qcr~r~~~~l~~~~k~g~~   68 (75)
T 2yum_A            3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELG-NRTAKQVASQVQKYFIKLTKAGIP   68 (75)
T ss_dssp             CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHS-SSCHHHHHHHHHHHHGGGSTTCSC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhcCCC
Confidence            57899999999999999999999996     68999999999 999999999999999988877643

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.52  E-value=1e-14  Score=110.47  Aligned_cols=52  Identities=29%  Similarity=0.439  Sum_probs=47.5

Q ss_pred             CccCCCChHHHHHHHHHHHHhC-CcHHHHHhhCC--CCChHHHHHHHHHHhHHHH
Q 019307           65 IKRGNFTDHEEKMIIHLQALLG-NRWAAIASYLP--QRTDNDIKNYWNTHLKKKL  116 (343)
Q Consensus        65 ikrg~WT~EED~~Ll~lv~~~G-nkWs~IA~~Lp--gRT~~qcKnRW~~~Lkkkl  116 (343)
                      .++++||+|||++|+++|.+|| ++|..||++++  +||+.|||+||++++++.+
T Consensus         9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~gl   63 (64)
T 3sjm_A            9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM   63 (64)
T ss_dssp             -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCC
Confidence            4789999999999999999999 58999999976  9999999999999998754

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.51  E-value=4.1e-15  Score=110.29  Aligned_cols=51  Identities=22%  Similarity=0.511  Sum_probs=47.7

Q ss_pred             CCccCCCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhcc
Q 019307           11 GVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYL   61 (343)
Q Consensus        11 ~ikKG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L   61 (343)
                      .+.+++||+|||++|+++|++||.++|..||+.|+.+|++.||++||.+++
T Consensus         6 p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~   56 (58)
T 2elk_A            6 SGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY   56 (58)
T ss_dssp             CSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence            466899999999999999999998899999999987899999999999875

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.50  E-value=3e-14  Score=105.63  Aligned_cols=50  Identities=26%  Similarity=0.432  Sum_probs=46.4

Q ss_pred             CCCccCCCChHHHHHHHHHHHHhC-CcHHHHHhhCC-CCChHHHHHHHHHHh
Q 019307           63 PGIKRGNFTDHEEKMIIHLQALLG-NRWAAIASYLP-QRTDNDIKNYWNTHL  112 (343)
Q Consensus        63 P~ikrg~WT~EED~~Ll~lv~~~G-nkWs~IA~~Lp-gRT~~qcKnRW~~~L  112 (343)
                      ..+.+++||+|||++|+++|.+|| ++|..||++|+ +||+.|||+||++++
T Consensus         5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~   56 (58)
T 2elk_A            5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY   56 (58)
T ss_dssp             CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence            356788999999999999999999 89999999999 999999999999864

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=99.20  E-value=4e-15  Score=119.40  Aligned_cols=57  Identities=21%  Similarity=0.247  Sum_probs=53.4

Q ss_pred             hcccCCCccCCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCChHHHHHHHHHHhHHH
Q 019307           59 NYLRPGIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKK  115 (343)
Q Consensus        59 n~L~P~ikrg~WT~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkkk  115 (343)
                      ..+.|.+++++||+|||++|+++|.+||++|..||.+|+|||++|||+||++++++.
T Consensus         8 ~~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~   64 (89)
T 2ltp_A            8 SSGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ   64 (89)
Confidence            356789999999999999999999999999999999999999999999999988763

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.46  E-value=1e-14  Score=112.30  Aligned_cols=58  Identities=17%  Similarity=0.271  Sum_probs=53.8

Q ss_pred             CCCCCccCCCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhcccCCCcc
Q 019307            8 DKIGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKR   67 (343)
Q Consensus         8 dK~~ikKG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~ikr   67 (343)
                      ..|.+++++||+|||++|+++|.+||. +|..||..|+ +|+..||+.||+++|++.++.
T Consensus         3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~-~Rt~~q~k~r~~~~l~~~~~~   60 (72)
T 2cu7_A            3 SGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIG-SRTVLQVKSYARQYFKNKVKC   60 (72)
T ss_dssp             CCCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHS-SSCHHHHHHHHHHHHHHHSCS
T ss_pred             CCCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhc
Confidence            357899999999999999999999995 9999999999 999999999999999877666

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=99.42  E-value=3.7e-14  Score=120.32  Aligned_cols=81  Identities=20%  Similarity=0.278  Sum_probs=60.7

Q ss_pred             CCCccCCCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhcccCCCccCCCChHHHHHHHHHHHHhCCcH
Q 019307           10 IGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDHEEKMIIHLQALLGNRW   89 (343)
Q Consensus        10 ~~ikKG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~ikrg~WT~EED~~Ll~lv~~~GnkW   89 (343)
                      |.+++|+||+|||++|+++|.+|| .+|..||..|+ +|+..+|+.||.++|++.+..+.|+.+--    ........+|
T Consensus        50 p~~~~~~Wt~eEd~~L~~~~~~~G-~~W~~Ia~~l~-gRt~~~~k~rw~~~l~~~~~~~~~~~~~~----~p~~~kk~~~  123 (131)
T 3zqc_A           50 PAVVKHAWTPEEDETIFRNYLKLG-SKWSVIAKLIP-GRTDNAIKNRWNSSISKRISTNSNHKEIL----LPDRSKKRKA  123 (131)
T ss_dssp             TTCCCSCCCHHHHHHHHHHHHHSC-SCHHHHTTTST-TCCHHHHHHHHHHTTGGGCCCCTTSCCCC----CCCCC-----
T ss_pred             ccccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcC-CCCHHHHHHHHHHHHHHHhhcCCCccccc----Cchhhhhhhh
Confidence            789999999999999999999999 59999999998 99999999999999999999999887631    1112224568


Q ss_pred             HHHHhhC
Q 019307           90 AAIASYL   96 (343)
Q Consensus        90 s~IA~~L   96 (343)
                      +.|++.|
T Consensus       124 ~~i~k~~  130 (131)
T 3zqc_A          124 ADVPKKL  130 (131)
T ss_dssp             -------
T ss_pred             hhcchhc
Confidence            8887765

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=99.41  E-value=6.8e-14  Score=118.06  Aligned_cols=65  Identities=22%  Similarity=0.423  Sum_probs=58.6

Q ss_pred             cCCCccCCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCChHHHHHHHHHHhHHHHhhhcCCCCCC
Q 019307           62 RPGIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQTGSDGG  126 (343)
Q Consensus        62 ~P~ikrg~WT~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkkklkk~q~~~~~~  126 (343)
                      .+..++++||+|||++|+++|.+||.+|..||..|++||+.||+.||+++|.+.+++...+.+++
T Consensus         6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd   70 (126)
T 3osg_A            6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEED   70 (126)
T ss_dssp             -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHH
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHH
Confidence            45788999999999999999999999999999999999999999999999999887777665543

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.40  E-value=1.9e-13  Score=113.17  Aligned_cols=79  Identities=20%  Similarity=0.316  Sum_probs=67.8

Q ss_pred             CCCCCccCCCCHHHHHHHHHHHHHhCCCCCceecccCC---CCCChhhhhhhhhhcc-----cCCCccCCCChHHHHH-H
Q 019307            8 DKIGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTG---LLRCSKSCRLRWTNYL-----RPGIKRGNFTDHEEKM-I   78 (343)
Q Consensus         8 dK~~ikKG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~---~~Rt~kQCR~RW~n~L-----~P~ikrg~WT~EED~~-L   78 (343)
                      .+...++++||+|||+.|+++|++||.++|..|+..++   .+||..+|++||.+++     +|.++++.-+++|-.. +
T Consensus         7 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~rv   86 (105)
T 2aje_A            7 DPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNRV   86 (105)
T ss_dssp             --CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHHH
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHHH
Confidence            34678899999999999999999999999999998652   2899999999999998     6999999888888766 7


Q ss_pred             HHHHHHhC
Q 019307           79 IHLQALLG   86 (343)
Q Consensus        79 l~lv~~~G   86 (343)
                      ++|+..+|
T Consensus        87 ~~~~~~~~   94 (105)
T 2aje_A           87 LNAHGYWT   94 (105)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77777655

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.38  E-value=2.7e-13  Score=107.89  Aligned_cols=69  Identities=22%  Similarity=0.422  Sum_probs=60.0

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCCceeccc----CCCCCChhhhhhhhhhcc-----cCCCccC-CCChHHHHHHHHHHHH
Q 019307           15 GPWTPEEDIILVSYIQEHGPGNWRSVPTN----TGLLRCSKSCRLRWTNYL-----RPGIKRG-NFTDHEEKMIIHLQAL   84 (343)
Q Consensus        15 G~WT~EEDe~L~~lV~~~G~~nW~~IA~~----l~~~Rt~kQCR~RW~n~L-----~P~ikrg-~WT~EED~~Ll~lv~~   84 (343)
                      ++||+|||+.|+++|++||.++|..|++.    ++ +||..+|++||.|++     +|.++++ +..++....++.++..
T Consensus         1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~-~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~   79 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY   79 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCT-TSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccC-CCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence            58999999999999999999999999985    76 899999999999988     5776665 6677777888888765

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.38  E-value=3.7e-13  Score=104.70  Aligned_cols=51  Identities=14%  Similarity=0.281  Sum_probs=47.5

Q ss_pred             CCCccCCCChHHHHHHHHHHHHhC----CcHHHHHhhCCCCChHHHHHHHHHHhH
Q 019307           63 PGIKRGNFTDHEEKMIIHLQALLG----NRWAAIASYLPQRTDNDIKNYWNTHLK  113 (343)
Q Consensus        63 P~ikrg~WT~EED~~Ll~lv~~~G----nkWs~IA~~LpgRT~~qcKnRW~~~Lk  113 (343)
                      +.+.+++||.+||++|++++..||    ++|.+||.+|||||++||++||+.+++
T Consensus        14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~   68 (73)
T 2cqr_A           14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS   68 (73)
T ss_dssp             TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred             cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            467889999999999999999999    689999999999999999999998764

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=99.38  E-value=2.3e-13  Score=110.76  Aligned_cols=60  Identities=28%  Similarity=0.547  Sum_probs=53.0

Q ss_pred             CCccCCCChHHHHHHHHHHHHhCC-cHHHHHhhCCCCChHHHHHHHHHHhHHHHhhhcCCC
Q 019307           64 GIKRGNFTDHEEKMIIHLQALLGN-RWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQTGS  123 (343)
Q Consensus        64 ~ikrg~WT~EED~~Ll~lv~~~Gn-kWs~IA~~LpgRT~~qcKnRW~~~Lkkklkk~q~~~  123 (343)
                      ++++++||+|||++|+++|.+||. +|..||.+|||||+.||+.||.++|.+.+++...+.
T Consensus         1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~   61 (105)
T 1gv2_A            1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTE   61 (105)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCH
Confidence            368999999999999999999996 799999999999999999999999987665544443

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.35  E-value=2.6e-13  Score=105.54  Aligned_cols=56  Identities=21%  Similarity=0.273  Sum_probs=47.9

Q ss_pred             CCCCCccCCCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhcccCCCcc
Q 019307            8 DKIGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKR   67 (343)
Q Consensus         8 dK~~ikKG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~ikr   67 (343)
                      ..|.+++|+||+|||++|+++|++||. +|..||+.|  +|++.||+.||.. |....+.
T Consensus        17 ldP~i~k~~wT~EED~~L~~l~~~~G~-kW~~IA~~l--gRt~~q~knRw~~-L~~~~~~   72 (73)
T 2llk_A           17 QGDRNHVGKYTPEEIEKLKELRIKHGN-DWATIGAAL--GRSASSVKDRCRL-MKDTCNT   72 (73)
T ss_dssp             --CCCCCCSSCHHHHHHHHHHHHHHSS-CHHHHHHHH--TSCHHHHHHHHHH-CSCCCSC
T ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHCC-CHHHHHHHh--CCCHHHHHHHHHH-HHHHccC
Confidence            358999999999999999999999995 699999999  6999999999985 5444443

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=99.32  E-value=9.9e-13  Score=107.85  Aligned_cols=59  Identities=19%  Similarity=0.389  Sum_probs=53.3

Q ss_pred             cCCCChHHHHHHHHHHHHhCC-cHHHHHhhCCCCChHHHHHHHHHHhHHHHhhhcCCCCC
Q 019307           67 RGNFTDHEEKMIIHLQALLGN-RWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQTGSDG  125 (343)
Q Consensus        67 rg~WT~EED~~Ll~lv~~~Gn-kWs~IA~~LpgRT~~qcKnRW~~~Lkkklkk~q~~~~~  125 (343)
                      +++||+|||++|+++|..||. +|..||.+||+||+.||+.||.++|.+.+++...+.++
T Consensus         1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eE   60 (107)
T 2k9n_A            1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEE   60 (107)
T ss_dssp             CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHH
Confidence            579999999999999999995 89999999999999999999999999887766666544

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.32  E-value=9.7e-13  Score=103.59  Aligned_cols=48  Identities=10%  Similarity=0.261  Sum_probs=45.3

Q ss_pred             CCccCCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCChHHHHHHHHHH
Q 019307           64 GIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTH  111 (343)
Q Consensus        64 ~ikrg~WT~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~  111 (343)
                      ...+++||+|||++|++++.+||++|.+||++|++||+.||++||.++
T Consensus        15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~   62 (79)
T 2yus_A           15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL   62 (79)
T ss_dssp             SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred             cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence            456889999999999999999999999999999999999999999865

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.30  E-value=1e-12  Score=103.52  Aligned_cols=51  Identities=22%  Similarity=0.481  Sum_probs=47.8

Q ss_pred             CCCCCccCCCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhc
Q 019307            8 DKIGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNY   60 (343)
Q Consensus         8 dK~~ikKG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~   60 (343)
                      .+....+++||+|||++|+++|++|| ++|..||..|+ +|+..||+.||.++
T Consensus        12 ~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~-~RT~~qcr~r~~~~   62 (79)
T 2yus_A           12 SKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVG-SRTQDECILHFLRL   62 (79)
T ss_dssp             CCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHS-SCCHHHHHHHHTTS
T ss_pred             ccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcC-CCCHHHHHHHHHHh
Confidence            45667789999999999999999999 89999999999 89999999999998

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=98.92  E-value=4.3e-13  Score=107.51  Aligned_cols=54  Identities=24%  Similarity=0.411  Sum_probs=50.2

Q ss_pred             CCCCCccCCCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhcccC
Q 019307            8 DKIGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRP   63 (343)
Q Consensus         8 dK~~ikKG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P   63 (343)
                      ..|.+++|+||+|||++|+++|..||. +|..||..|+ +|+..||+.||.++|+.
T Consensus        10 ~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~-gRt~~q~k~r~~~~lrk   63 (89)
T 2ltp_A           10 GRENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVG-SKTVSQCKNFYFNYKKR   63 (89)
Confidence            457899999999999999999999995 8999999999 99999999999999863

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.26  E-value=1.1e-12  Score=102.07  Aligned_cols=54  Identities=15%  Similarity=0.387  Sum_probs=49.3

Q ss_pred             CCCCCccCCCCHHHHHHHHHHHHHhC---CCCCceecccCCCCCChhhhhhhhhhccc
Q 019307            8 DKIGVKKGPWTPEEDIILVSYIQEHG---PGNWRSVPTNTGLLRCSKSCRLRWTNYLR   62 (343)
Q Consensus         8 dK~~ikKG~WT~EEDe~L~~lV~~~G---~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~   62 (343)
                      +++.+.+++||+|||++|+++|..||   +.+|..||..|| +|+.+||+.||.+++.
T Consensus        12 ~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vp-GRT~~qcr~Ry~~L~~   68 (73)
T 2cqr_A           12 ERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKLLVS   68 (73)
T ss_dssp             CTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHHHHS
T ss_pred             cccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence            56778899999999999999999999   358999999999 9999999999998764

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.24  E-value=9.4e-12  Score=98.97  Aligned_cols=49  Identities=24%  Similarity=0.432  Sum_probs=45.3

Q ss_pred             CCCChHHHHHHHHHHHHhCC-cHHHHHhh----CCCCChHHHHHHHHHHhHHHH
Q 019307           68 GNFTDHEEKMIIHLQALLGN-RWAAIASY----LPQRTDNDIKNYWNTHLKKKL  116 (343)
Q Consensus        68 g~WT~EED~~Ll~lv~~~Gn-kWs~IA~~----LpgRT~~qcKnRW~~~Lkkkl  116 (343)
                      ++||+|||+.|+++|++||. +|+.|++.    |++||+.+||+||+++++...
T Consensus         1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~   54 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS   54 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhcc
Confidence            47999999999999999996 99999996    899999999999999998653

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.22  E-value=4.3e-12  Score=118.25  Aligned_cols=57  Identities=28%  Similarity=0.566  Sum_probs=50.3

Q ss_pred             CCCccCCCChHHHHHHHHHHHHhCCc------HHHHHhhCCCCChHHHHHHHHHHhHHHHhhh
Q 019307           63 PGIKRGNFTDHEEKMIIHLQALLGNR------WAAIASYLPQRTDNDIKNYWNTHLKKKLKKL  119 (343)
Q Consensus        63 P~ikrg~WT~EED~~Ll~lv~~~Gnk------Ws~IA~~LpgRT~~qcKnRW~~~Lkkklkk~  119 (343)
                      +.+++++||+|||++|+++|.+||++      |.+||++|||||++|||+||+.+|++++...
T Consensus         4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~v   66 (246)
T 1ign_A            4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYV   66 (246)
T ss_dssp             ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCE
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcccc
Confidence            35788999999999999999999975      9999999999999999999999999988744

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.22  E-value=6.5e-12  Score=106.40  Aligned_cols=55  Identities=25%  Similarity=0.415  Sum_probs=50.3

Q ss_pred             ccCCCccCCCChHHHHHHHHHHHHhCC-cHHHHHhh----CCCCChHHHHHHHHHHhHHH
Q 019307           61 LRPGIKRGNFTDHEEKMIIHLQALLGN-RWAAIASY----LPQRTDNDIKNYWNTHLKKK  115 (343)
Q Consensus        61 L~P~ikrg~WT~EED~~Ll~lv~~~Gn-kWs~IA~~----LpgRT~~qcKnRW~~~Lkkk  115 (343)
                      +.+..++++||+|||+.|+++|.+||. +|+.|+..    |++||+.+||+||+++++..
T Consensus        11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~   70 (121)
T 2juh_A           11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA   70 (121)
T ss_dssp             CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHH
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhh
Confidence            456788999999999999999999997 99999998    48999999999999999853

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=99.19  E-value=2e-11  Score=92.21  Aligned_cols=49  Identities=22%  Similarity=0.455  Sum_probs=45.4

Q ss_pred             ccCCCChHHHHHHHHHHHHhCCcHHHHH---hhCCCCChHHHHHHHHHHhHH
Q 019307           66 KRGNFTDHEEKMIIHLQALLGNRWAAIA---SYLPQRTDNDIKNYWNTHLKK  114 (343)
Q Consensus        66 krg~WT~EED~~Ll~lv~~~GnkWs~IA---~~LpgRT~~qcKnRW~~~Lkk  114 (343)
                      ++.+||+|||+.|+++|++||.+|..|+   .++++||+.+||+||+++.+.
T Consensus         7 ~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~   58 (62)
T 1x58_A            7 GRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG   58 (62)
T ss_dssp             CSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred             CCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence            6789999999999999999999999999   577999999999999998764

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.18  E-value=2.6e-11  Score=100.41  Aligned_cols=54  Identities=24%  Similarity=0.401  Sum_probs=48.5

Q ss_pred             cCCCccCCCChHHHHHHHHHHHHhCC-cHHHHHhhC----CCCChHHHHHHHHHHhHHH
Q 019307           62 RPGIKRGNFTDHEEKMIIHLQALLGN-RWAAIASYL----PQRTDNDIKNYWNTHLKKK  115 (343)
Q Consensus        62 ~P~ikrg~WT~EED~~Ll~lv~~~Gn-kWs~IA~~L----pgRT~~qcKnRW~~~Lkkk  115 (343)
                      .+..++++||+|||+.|+++|.+||. +|+.|++.+    ++||+.+||+||+++++..
T Consensus         8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~   66 (105)
T 2aje_A            8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTA   66 (105)
T ss_dssp             -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTT
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence            34678899999999999999999996 999999965    8999999999999998754

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=99.18  E-value=2.9e-11  Score=98.02  Aligned_cols=50  Identities=20%  Similarity=0.371  Sum_probs=45.4

Q ss_pred             ccCCCChHHHHHHHHHHHHhC----CcHHHHHhhCCCCChHHHHHHHHHHhHHH
Q 019307           66 KRGNFTDHEEKMIIHLQALLG----NRWAAIASYLPQRTDNDIKNYWNTHLKKK  115 (343)
Q Consensus        66 krg~WT~EED~~Ll~lv~~~G----nkWs~IA~~LpgRT~~qcKnRW~~~Lkkk  115 (343)
                      .+++||.|||++|++++.+||    ++|.+||.+|||||++||++||+.++...
T Consensus         7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv   60 (93)
T 2cjj_A            7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDI   60 (93)
T ss_dssp             -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            467999999999999999996    78999999999999999999999987663

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.12  E-value=7.6e-11  Score=99.97  Aligned_cols=53  Identities=26%  Similarity=0.442  Sum_probs=48.0

Q ss_pred             CCCccCCCChHHHHHHHHHHHHhCC-cHHHHHhh----CCCCChHHHHHHHHHHhHHH
Q 019307           63 PGIKRGNFTDHEEKMIIHLQALLGN-RWAAIASY----LPQRTDNDIKNYWNTHLKKK  115 (343)
Q Consensus        63 P~ikrg~WT~EED~~Ll~lv~~~Gn-kWs~IA~~----LpgRT~~qcKnRW~~~Lkkk  115 (343)
                      ...++++||.|||+.|+++|++||. +|+.|++.    |++||+.|||+||+++++..
T Consensus        27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~   84 (122)
T 2roh_A           27 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTA   84 (122)
T ss_dssp             CCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence            3557899999999999999999996 99999986    38999999999999999764

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=98.93  E-value=1.8e-10  Score=93.38  Aligned_cols=48  Identities=15%  Similarity=0.367  Sum_probs=43.7

Q ss_pred             ccCCCCHHHHHHHHHHHHHhC---CCCCceecccCCCCCChhhhhhhhhhcc
Q 019307           13 KKGPWTPEEDIILVSYIQEHG---PGNWRSVPTNTGLLRCSKSCRLRWTNYL   61 (343)
Q Consensus        13 kKG~WT~EEDe~L~~lV~~~G---~~nW~~IA~~l~~~Rt~kQCR~RW~n~L   61 (343)
                      .+++||+|||++|++++..|+   ++.|..||..+| +|+..+|+.||.+++
T Consensus         7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vp-GRT~~q~k~ry~~l~   57 (93)
T 2cjj_A            7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEILV   57 (93)
T ss_dssp             -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence            378999999999999999997   467999999999 999999999999864

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.93  E-value=1.3e-09  Score=81.31  Aligned_cols=47  Identities=23%  Similarity=0.276  Sum_probs=43.5

Q ss_pred             ccCCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCChHHHHHHHHHHh
Q 019307           66 KRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHL  112 (343)
Q Consensus        66 krg~WT~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~L  112 (343)
                      ..++||+||++++++++.+||.+|..||.+||+||..||+.+|....
T Consensus        11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~K   57 (61)
T 2eqr_A           11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTK   57 (61)
T ss_dssp             CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHT
T ss_pred             cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhc
Confidence            45799999999999999999999999999999999999999997643

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=98.92  E-value=2.4e-09  Score=86.87  Aligned_cols=66  Identities=17%  Similarity=0.215  Sum_probs=58.8

Q ss_pred             hhhhhhhhhhcccCCCccCCCChHHHHHHHHHHHHhCCcHHHHHhhC-----CCCChHHHHHHHHHHhHHHHhhh
Q 019307           50 SKSCRLRWTNYLRPGIKRGNFTDHEEKMIIHLQALLGNRWAAIASYL-----PQRTDNDIKNYWNTHLKKKLKKL  119 (343)
Q Consensus        50 ~kQCR~RW~n~L~P~ikrg~WT~EED~~Ll~lv~~~GnkWs~IA~~L-----pgRT~~qcKnRW~~~Lkkklkk~  119 (343)
                      +.=+.++|.++|.+    .+||.||+..|++|+++|+.+|..|+..+     ++||..+||+||..+.++-++..
T Consensus        17 ~~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r   87 (93)
T 3hm5_A           17 PVYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR   87 (93)
T ss_dssp             CCCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred             CccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            34678999999976    89999999999999999999999999998     58999999999999888765544

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.81  E-value=5.5e-09  Score=80.90  Aligned_cols=50  Identities=16%  Similarity=0.214  Sum_probs=45.0

Q ss_pred             CCccCCCChHHHHHHHHHHHHhC----CcHHHHHhhCCCCChHHHHHHHHHHhHH
Q 019307           64 GIKRGNFTDHEEKMIIHLQALLG----NRWAAIASYLPQRTDNDIKNYWNTHLKK  114 (343)
Q Consensus        64 ~ikrg~WT~EED~~Ll~lv~~~G----nkWs~IA~~LpgRT~~qcKnRW~~~Lkk  114 (343)
                      ..+.+.||.|||++|.+++.+|+    ++|.+||.+| |||.++|++||+.+++.
T Consensus         5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d   58 (72)
T 2cqq_A            5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS   58 (72)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence            35678999999999999999997    6899999998 99999999999987555

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.71  E-value=6.5e-09  Score=77.54  Aligned_cols=52  Identities=15%  Similarity=0.154  Sum_probs=46.3

Q ss_pred             CCCCCccCCCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhcc
Q 019307            8 DKIGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYL   61 (343)
Q Consensus         8 dK~~ikKG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L   61 (343)
                      ++.....++||+||++++++++..|| .+|..||..|+ +|+..||+++|....
T Consensus         6 ~~~r~~~~~WT~eE~~~F~~~~~~~g-k~w~~Ia~~l~-~rt~~~~v~~Yy~~K   57 (61)
T 2eqr_A            6 SGDRQFMNVWTDHEKEIFKDKFIQHP-KNFGLIASYLE-RKSVPDCVLYYYLTK   57 (61)
T ss_dssp             CCCCSCCCSCCHHHHHHHHHHHHHST-TCHHHHHHHCT-TSCHHHHHHHHHHHT
T ss_pred             ccccccCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHcC-CCCHHHHHHHHHHhc
Confidence            44456679999999999999999999 69999999999 999999999997643

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=98.67  E-value=9.4e-09  Score=77.57  Aligned_cols=49  Identities=16%  Similarity=0.219  Sum_probs=43.8

Q ss_pred             CccCCCCHHHHHHHHHHHHHhCCCCCceec---ccCCCCCChhhhhhhhhhccc
Q 019307           12 VKKGPWTPEEDIILVSYIQEHGPGNWRSVP---TNTGLLRCSKSCRLRWTNYLR   62 (343)
Q Consensus        12 ikKG~WT~EEDe~L~~lV~~~G~~nW~~IA---~~l~~~Rt~kQCR~RW~n~L~   62 (343)
                      ..+++||+|||+.|++.|++||. +|..|+   ..+. +|+...+++||.+..+
T Consensus         6 ~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~-~RT~VdLKdk~r~L~k   57 (62)
T 1x58_A            6 SGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQK-GRRAVDLAHKYHRLIS   57 (62)
T ss_dssp             CCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCT-TCCHHHHHHHHHHHHT
T ss_pred             CCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCcc-CcccchHHHHHHHHHh
Confidence            36899999999999999999996 999999   4555 8999999999998654

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.63  E-value=2e-08  Score=92.98  Aligned_cols=49  Identities=14%  Similarity=0.310  Sum_probs=45.8

Q ss_pred             ccCCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCChHHHHHHHHHHhHH
Q 019307           66 KRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKK  114 (343)
Q Consensus        66 krg~WT~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkk  114 (343)
                      ...+||+||+.++++++.+||++|..||+.|++||..|||++|+.+.++
T Consensus       132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR  180 (235)
T 2iw5_B          132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR  180 (235)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred             cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            4569999999999999999999999999999999999999999987765

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.47  E-value=1.6e-07  Score=72.95  Aligned_cols=47  Identities=13%  Similarity=0.219  Sum_probs=42.6

Q ss_pred             ccCCCChHHHHHHHHHHHHhC----CcHHHHHhhCCCCChHHHHHHHHHHh
Q 019307           66 KRGNFTDHEEKMIIHLQALLG----NRWAAIASYLPQRTDNDIKNYWNTHL  112 (343)
Q Consensus        66 krg~WT~EED~~Ll~lv~~~G----nkWs~IA~~LpgRT~~qcKnRW~~~L  112 (343)
                      ....||.+|+++|.+++..|+    .+|.+||.++||||..+|+.||..++
T Consensus         7 ~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~   57 (73)
T 1wgx_A            7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENP   57 (73)
T ss_dssp             SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSS
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            346899999999999999998    47999999999999999999998763

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.46  E-value=3.3e-08  Score=76.50  Aligned_cols=50  Identities=16%  Similarity=0.274  Sum_probs=43.8

Q ss_pred             CCccCCCCHHHHHHHHHHHHHhC---CCCCceecccCCCCCChhhhhhhhhhccc
Q 019307           11 GVKKGPWTPEEDIILVSYIQEHG---PGNWRSVPTNTGLLRCSKSCRLRWTNYLR   62 (343)
Q Consensus        11 ~ikKG~WT~EEDe~L~~lV~~~G---~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~   62 (343)
                      ..+.+.||.|||++|.+++.+|+   ++.|..||..+  +|+..+|+.||..+..
T Consensus         5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l--gRt~~eV~~~y~~L~~   57 (72)
T 2cqq_A            5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL--GRSVTDVTTKAKQLKD   57 (72)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH--TSCHHHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh--CCCHHHHHHHHHHHHH
Confidence            45678999999999999999998   35799999997  4999999999987654

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=98.43  E-value=1.2e-07  Score=96.18  Aligned_cols=46  Identities=15%  Similarity=0.329  Sum_probs=42.6

Q ss_pred             CCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCChHHHHHHHHHHhH
Q 019307           68 GNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLK  113 (343)
Q Consensus        68 g~WT~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lk  113 (343)
                      ..||++|-.++++++.+||.+|..||.+++.||..|||++|..+.+
T Consensus       381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kk  426 (482)
T 2xag_B          381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRR  426 (482)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred             CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            4899999999999999999999999999999999999999976443

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=98.38  E-value=3.4e-07  Score=68.20  Aligned_cols=47  Identities=30%  Similarity=0.476  Sum_probs=42.3

Q ss_pred             cCCCChHHHHHHHHHHHHh--------CCc-HHHHHh-hCCCCChHHHHHHHHHHhH
Q 019307           67 RGNFTDHEEKMIIHLQALL--------GNR-WAAIAS-YLPQRTDNDIKNYWNTHLK  113 (343)
Q Consensus        67 rg~WT~EED~~Ll~lv~~~--------Gnk-Ws~IA~-~LpgRT~~qcKnRW~~~Lk  113 (343)
                      |.+||+|||..|++.|.+|        |+. |.+++. .+|++|-.+||+||...|+
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~   58 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence            5689999999999999999        543 999999 8999999999999988764

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=98.35  E-value=1.1e-07  Score=70.88  Aligned_cols=48  Identities=21%  Similarity=0.482  Sum_probs=42.6

Q ss_pred             cCCCCHHHHHHHHHHHHHh--------CCCCCceecc-cCCCCCChhhhhhhhhhccc
Q 019307           14 KGPWTPEEDIILVSYIQEH--------GPGNWRSVPT-NTGLLRCSKSCRLRWTNYLR   62 (343)
Q Consensus        14 KG~WT~EEDe~L~~lV~~~--------G~~nW~~IA~-~l~~~Rt~kQCR~RW~n~L~   62 (343)
                      |.+||+|||+.|+++|.+|        |..-|+.++. .++ .++..+||+||.++|.
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~-~HtwqSwRdRy~k~l~   58 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLT-QHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSS-SCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCC-CCCHHHHHHHHHHHcc
Confidence            5689999999999999999        4345999999 787 9999999999999874

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.24  E-value=3.8e-07  Score=84.49  Aligned_cols=51  Identities=24%  Similarity=0.438  Sum_probs=46.3

Q ss_pred             CCCccCCCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhccc
Q 019307           10 IGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLR   62 (343)
Q Consensus        10 ~~ikKG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~   62 (343)
                      .....++||+||++++++++.+|| ++|..||+.++ +|+..||+.+|.++.+
T Consensus       129 ~~k~s~~WTeEE~~lFleAl~kYG-KDW~~IAk~Vg-TKT~~QcKnfY~~~kK  179 (235)
T 2iw5_B          129 IQKCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIG-NKSVVQVKNFFVNYRR  179 (235)
T ss_dssp             CCCCCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred             CCccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence            344578999999999999999999 69999999999 9999999999998764

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.23  E-value=3.4e-07  Score=71.20  Aligned_cols=48  Identities=21%  Similarity=0.407  Sum_probs=43.3

Q ss_pred             cCCCCHHHHHHHHHHHHHhCC---CCCceecccCCCCCChhhhhhhhhhccc
Q 019307           14 KGPWTPEEDIILVSYIQEHGP---GNWRSVPTNTGLLRCSKSCRLRWTNYLR   62 (343)
Q Consensus        14 KG~WT~EEDe~L~~lV~~~G~---~nW~~IA~~l~~~Rt~kQCR~RW~n~L~   62 (343)
                      ...||.+|+++|.+++..|+.   ++|..||..+| +|+..+|+.||...+.
T Consensus         8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~-gKT~eE~~~hY~~l~~   58 (73)
T 1wgx_A            8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPR   58 (73)
T ss_dssp             SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSS
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcC-CCCHHHHHHHHHHHHh
Confidence            468999999999999999975   47999999999 8999999999998754

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=98.15  E-value=5e-06  Score=80.06  Aligned_cols=100  Identities=14%  Similarity=0.239  Sum_probs=80.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhh----hc--cc--------------------------
Q 019307           15 GPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWT----NY--LR--------------------------   62 (343)
Q Consensus        15 G~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~----n~--L~--------------------------   62 (343)
                      +.||..+...++.++.+||..+|..||..|+ +++...++..+.    ++  |.                          
T Consensus       111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~-~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l  189 (304)
T 1ofc_X          111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVE-GKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKAL  189 (304)
T ss_dssp             TTCCHHHHHHHHHHHHHHCTTCHHHHTTSST-TCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4699999999999999999999999999998 888877644211    11  00                          


Q ss_pred             ------------------CCCccCCCChHHHHHHHHHHHHhCC----cHHHHHh------------hCCCCChHHHHHHH
Q 019307           63 ------------------PGIKRGNFTDHEEKMIIHLQALLGN----RWAAIAS------------YLPQRTDNDIKNYW  108 (343)
Q Consensus        63 ------------------P~ikrg~WT~EED~~Ll~lv~~~Gn----kWs~IA~------------~LpgRT~~qcKnRW  108 (343)
                                        +..+...||++||..||-++.+||-    .|..|..            ++..||+.+|..|.
T Consensus       190 ~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc  269 (304)
T 1ofc_X          190 DQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRC  269 (304)
T ss_dssp             HHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHH
T ss_pred             HHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHH
Confidence                              2234568999999999999999994    6999962            45679999999999


Q ss_pred             HHHhHHH
Q 019307          109 NTHLKKK  115 (343)
Q Consensus       109 ~~~Lkkk  115 (343)
                      +.+++--
T Consensus       270 ~tLi~~i  276 (304)
T 1ofc_X          270 NTLITLI  276 (304)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988753

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=98.08  E-value=4.4e-06  Score=67.35  Aligned_cols=47  Identities=13%  Similarity=0.275  Sum_probs=43.6

Q ss_pred             CCCChHHHHHHHHHHHHhCC---cHHHHHhhCCCCChHHHHHHHHHHhHH
Q 019307           68 GNFTDHEEKMIIHLQALLGN---RWAAIASYLPQRTDNDIKNYWNTHLKK  114 (343)
Q Consensus        68 g~WT~EED~~Ll~lv~~~Gn---kWs~IA~~LpgRT~~qcKnRW~~~Lkk  114 (343)
                      --||.|||+.||...++-|.   .|+.||+.|.+|+.+||++||+.+++-
T Consensus        34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~L   83 (95)
T 1ug2_A           34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQL   83 (95)
T ss_dssp             SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHH
T ss_pred             EEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence            36999999999999999986   899999999999999999999998765

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.02  E-value=9.9e-06  Score=60.73  Aligned_cols=49  Identities=14%  Similarity=0.251  Sum_probs=44.8

Q ss_pred             cCCCccCCCChHHHHHHHHHHHHhCCcHHHHHh-hCCCCChHHHHHHHHH
Q 019307           62 RPGIKRGNFTDHEEKMIIHLQALLGNRWAAIAS-YLPQRTDNDIKNYWNT  110 (343)
Q Consensus        62 ~P~ikrg~WT~EED~~Ll~lv~~~GnkWs~IA~-~LpgRT~~qcKnRW~~  110 (343)
                      .|.++...||+||-++..+.+.+||.+|..|++ .|++||..+|..+|..
T Consensus         4 ~p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~   53 (63)
T 2yqk_A            4 GSSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYY   53 (63)
T ss_dssp             CCCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred             CCCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhc
Confidence            367788899999999999999999999999999 5899999999998863

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=97.10  E-value=1.8e-06  Score=66.22  Aligned_cols=44  Identities=18%  Similarity=0.344  Sum_probs=41.4

Q ss_pred             CCChHHHHHHHHHHHHhCC---cHHHHHhhCCCCChHHHHHHHHHHhH
Q 019307           69 NFTDHEEKMIIHLQALLGN---RWAAIASYLPQRTDNDIKNYWNTHLK  113 (343)
Q Consensus        69 ~WT~EED~~Ll~lv~~~Gn---kWs~IA~~LpgRT~~qcKnRW~~~Lk  113 (343)
                      -||.|||+.||..+++-|.   .|+.||..| +|+++||++||..+++
T Consensus        16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~   62 (70)
T 2lr8_A           16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMK   62 (70)
Confidence            6999999999999999996   799999999 9999999999998775

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=97.86  E-value=2.4e-06  Score=66.45  Aligned_cols=43  Identities=19%  Similarity=0.357  Sum_probs=38.7

Q ss_pred             cCCCChHHHHHHHHHHHHhCC----cHHHHHhhCCCCChHHHHHHHH
Q 019307           67 RGNFTDHEEKMIIHLQALLGN----RWAAIASYLPQRTDNDIKNYWN  109 (343)
Q Consensus        67 rg~WT~EED~~Ll~lv~~~Gn----kWs~IA~~LpgRT~~qcKnRW~  109 (343)
                      ...||.+|+++|..++..|+.    +|.+||..|||||..+|+.+|.
T Consensus        20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~   66 (74)
T 4eef_G           20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE   66 (74)
T ss_dssp             --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence            458999999999999999984    7999999999999999999885

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=97.82  E-value=5.5e-05  Score=61.24  Aligned_cols=60  Identities=18%  Similarity=0.265  Sum_probs=50.2

Q ss_pred             hhhhhcccCCCccCCCChHHHHHHHHHHHHhCCcHHHHHhhCC-----CCChHHHHHHHHHHhHHHHhh
Q 019307           55 LRWTNYLRPGIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLP-----QRTDNDIKNYWNTHLKKKLKK  118 (343)
Q Consensus        55 ~RW~n~L~P~ikrg~WT~EED~~Ll~lv~~~GnkWs~IA~~Lp-----gRT~~qcKnRW~~~Lkkklkk  118 (343)
                      +.|..+|.    ...||.||...|++|+++|+-+|..|+..+.     .||-.++|.||..+.++-++.
T Consensus        22 eEY~~~L~----~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~   86 (93)
T 4iej_A           22 QEYQLYLH----DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANV   86 (93)
T ss_dssp             HHHHHHTC----BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhC----CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence            34555564    3689999999999999999999999998763     799999999999988775543

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=97.75  E-value=8.3e-06  Score=63.39  Aligned_cols=44  Identities=16%  Similarity=0.345  Sum_probs=39.2

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCC---CCceecccCCCCCChhhhhhhhh
Q 019307           14 KGPWTPEEDIILVSYIQEHGPG---NWRSVPTNTGLLRCSKSCRLRWT   58 (343)
Q Consensus        14 KG~WT~EEDe~L~~lV~~~G~~---nW~~IA~~l~~~Rt~kQCR~RW~   58 (343)
                      ...||.||+++|..++..|...   .|.+||..+| ||+..+|+.+|.
T Consensus        20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~Vp-GKT~eEVk~hY~   66 (74)
T 4eef_G           20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVK-GRTPEEVKKHYE   66 (74)
T ss_dssp             --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSC-SSCHHHHHGGGC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcC-CCCHHHHHHHHH
Confidence            4589999999999999999754   7999999999 999999999985

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.59  E-value=4.2e-05  Score=57.30  Aligned_cols=50  Identities=12%  Similarity=0.064  Sum_probs=44.5

Q ss_pred             CCCCccCCCCHHHHHHHHHHHHHhCCCCCceecc-cCCCCCChhhhhhhhhhc
Q 019307            9 KIGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPT-NTGLLRCSKSCRLRWTNY   60 (343)
Q Consensus         9 K~~ikKG~WT~EEDe~L~~lV~~~G~~nW~~IA~-~l~~~Rt~kQCR~RW~n~   60 (343)
                      .|.++...||+||-++..+++.+|| .+|..|++ .++ .|+..+|.+.|...
T Consensus         4 ~p~~~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~-~Kt~~~~v~fYY~w   54 (63)
T 2yqk_A            4 GSSGIEKCWTEDEVKRFVKGLRQYG-KNFFRIRKELLP-NKETGELITFYYYW   54 (63)
T ss_dssp             CCCCCCCSCCHHHHHHHHHHHHHTC-SCHHHHHHHSCT-TSCHHHHHHHHHHH
T ss_pred             CCCcCCCCcCHHHHHHHHHHHHHhC-ccHHHHHHHHcC-CCcHHHHHHHHhcc
Confidence            4677889999999999999999999 59999998 588 89999999887643

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=97.52  E-value=0.00013  Score=58.87  Aligned_cols=44  Identities=16%  Similarity=0.231  Sum_probs=41.2

Q ss_pred             cCCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCChHHHHHHHHH
Q 019307           67 RGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNT  110 (343)
Q Consensus        67 rg~WT~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~  110 (343)
                      ...||+||..+..+.+..||.+|..|+..||+||..+|-.+|..
T Consensus        43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~   86 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYL   86 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhc
Confidence            45899999999999999999999999999999999999998864

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.48  E-value=0.0002  Score=54.74  Aligned_cols=43  Identities=16%  Similarity=0.332  Sum_probs=40.4

Q ss_pred             cCCCChHHHHHHHHHHHHhCCcHHHHHh-hCCCCChHHHHHHHH
Q 019307           67 RGNFTDHEEKMIIHLQALLGNRWAAIAS-YLPQRTDNDIKNYWN  109 (343)
Q Consensus        67 rg~WT~EED~~Ll~lv~~~GnkWs~IA~-~LpgRT~~qcKnRW~  109 (343)
                      ...||+||-.+..+.+.+||.+|..|++ .||+||..+|..+|.
T Consensus         8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY   51 (70)
T 2crg_A            8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYY   51 (70)
T ss_dssp             SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHH
Confidence            4589999999999999999999999999 599999999999886

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=97.39  E-value=5.9e-05  Score=76.60  Aligned_cols=49  Identities=20%  Similarity=0.397  Sum_probs=44.4

Q ss_pred             CCccCCCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhcc
Q 019307           11 GVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYL   61 (343)
Q Consensus        11 ~ikKG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L   61 (343)
                      .....+||.||-+++++++.+|| ++|..|+..++ .|+..||+.+|.++-
T Consensus       377 ~~~~~~WT~eE~~~f~~al~~yG-kdw~~IA~~Vg-TKT~~Qvk~fy~~~k  425 (482)
T 2xag_B          377 QKCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIG-NKSVVQVKNFFVNYR  425 (482)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHT-TCHHHHHHHHS-SCCHHHHHHHHHHTT
T ss_pred             cccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence            34568999999999999999999 69999999999 999999999998753

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=97.20  E-value=0.00025  Score=55.50  Aligned_cols=53  Identities=21%  Similarity=0.446  Sum_probs=42.4

Q ss_pred             cCCCChHHHHHHHHHHHHhC----------CcHHHHHhhCC----CCChHHHHHHHHHHhHHHHhhhc
Q 019307           67 RGNFTDHEEKMIIHLQALLG----------NRWAAIASYLP----QRTDNDIKNYWNTHLKKKLKKLQ  120 (343)
Q Consensus        67 rg~WT~EED~~Ll~lv~~~G----------nkWs~IA~~Lp----gRT~~qcKnRW~~~Lkkklkk~q  120 (343)
                      ...||.+|-..||+++..+.          ..|..||..|.    .||+.||+++|.++.+. +++..
T Consensus         4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~-Yk~~k   70 (86)
T 2ebi_A            4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKE-FKKAK   70 (86)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-HCSCS
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH-HHHHH
Confidence            46899999999999997632          14999999873    79999999999986655 55443

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=97.11  E-value=0.0002  Score=58.01  Aligned_cols=50  Identities=12%  Similarity=0.160  Sum_probs=43.3

Q ss_pred             CccCCCCHHHHHHHHHHHHHhCCCCCceecccCC----CCCChhhhhhhhhhccc
Q 019307           12 VKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTG----LLRCSKSCRLRWTNYLR   62 (343)
Q Consensus        12 ikKG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~----~~Rt~kQCR~RW~n~L~   62 (343)
                      ++..+||.||++.|++++++|+ ..|..|+..+.    .+|+..+++.||..+.+
T Consensus        28 L~~~~WTkEETd~Lf~L~~~fd-lRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~   81 (93)
T 3hm5_A           28 LHDDAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHICA   81 (93)
T ss_dssp             TCBTTBCHHHHHHHHHHHHHTT-TCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHHHHhC-CCeeeehhhhccCCCCCCCHHHHHHHHHHHHH
Confidence            4458999999999999999999 59999998883    27999999999987543

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=96.96  E-value=0.0021  Score=57.44  Aligned_cols=102  Identities=9%  Similarity=0.062  Sum_probs=68.6

Q ss_pred             CccCCCCHHHHHHHHHHHHHhC--CCCCceeccc--CCCCCChhhhhhhhh-------h---------------------
Q 019307           12 VKKGPWTPEEDIILVSYIQEHG--PGNWRSVPTN--TGLLRCSKSCRLRWT-------N---------------------   59 (343)
Q Consensus        12 ikKG~WT~EEDe~L~~lV~~~G--~~nW~~IA~~--l~~~Rt~kQCR~RW~-------n---------------------   59 (343)
                      -....||..|-..|+.++.+||  ...|..|+..  +. +++...+..-+.       .                     
T Consensus         5 ~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~-~Ks~~~v~~y~~~f~~~c~~~~~~~~~~~~~~~~~~~~~~~   83 (211)
T 4b4c_A            5 ENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELV-DKSETDLRRLGELVHNGCIKALKDSSSGTERTGGRLGKVKG   83 (211)
T ss_dssp             ---CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCT-TSCHHHHHHHHHHHHHHHHHHHC-----------------C
T ss_pred             ccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccc
Confidence            3457899999999999999999  5689999754  33 455533322000       0                     


Q ss_pred             -----------------------ccc--------------------CCCccCCCChHHHHHHHHHHHHhC-CcHHHHHh-
Q 019307           60 -----------------------YLR--------------------PGIKRGNFTDHEEKMIIHLQALLG-NRWAAIAS-   94 (343)
Q Consensus        60 -----------------------~L~--------------------P~ikrg~WT~EED~~Ll~lv~~~G-nkWs~IA~-   94 (343)
                                             .|+                    +......||.+||..||..+.+|| ++|..|-. 
T Consensus        84 ~~~~~~~v~~nA~~il~R~~~l~~L~~~v~~~~~~~~~~~i~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D  163 (211)
T 4b4c_A           84 PTFRISGVQVNAKLVISHEEELIPLHKSIPSDPEERKQYTIPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKMD  163 (211)
T ss_dssp             CEEEETTEEEEHHHHHHHHHHHHHHHHHSCSSHHHHHTCCCCSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHHC
T ss_pred             hhhhhcccchhHHHHHHhHHHHHHHHHHHHhchhhHHHcCcCCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHhC
Confidence                                   000                    001123599999999999999999 89999965 


Q ss_pred             -hC------------CCCChHHHHHHHHHHhHH
Q 019307           95 -YL------------PQRTDNDIKNYWNTHLKK  114 (343)
Q Consensus        95 -~L------------pgRT~~qcKnRW~~~Lkk  114 (343)
                       .|            ..++..++..|..++|+-
T Consensus       164 ~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~~  196 (211)
T 4b4c_A          164 PDLSLTHKILPDDPDKKPQAKQLQTRADYLIKL  196 (211)
T ss_dssp             SSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHHH
T ss_pred             hhcCccccccccccccCCChHHHHHHHHHHHHH
Confidence             11            124566899998877763

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=96.89  E-value=0.00043  Score=55.80  Aligned_cols=44  Identities=14%  Similarity=0.237  Sum_probs=40.4

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhh
Q 019307           14 KGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTN   59 (343)
Q Consensus        14 KG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n   59 (343)
                      ...||+||.+++.+.+..|| .+|..|+..++ +|+..+|.+.|..
T Consensus        43 ~~~WT~eE~~~F~~~~~~~g-K~F~~Ia~~l~-~Kt~~~cV~~YY~   86 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQHP-KNFGLIASFLE-RKTVAECVLYYYL   86 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHST-TCHHHHHHTCT-TCCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcC-CCCHHHHHHHHhc
Confidence            46899999999999999999 59999999999 9999999998754

>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A

Probab=96.87  E-value=0.003  Score=62.31  Aligned_cols=105  Identities=13%  Similarity=0.238  Sum_probs=79.0

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhcc-------c-------------------------
Q 019307           15 GPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYL-------R-------------------------   62 (343)
Q Consensus        15 G~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L-------~-------------------------   62 (343)
                      +.||.-+=..++.++.+||..+-..||..|+.+++...++. |.+.+       .                         
T Consensus       124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~-Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~  202 (374)
T 2y9y_A          124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRA-YAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEA  202 (374)
T ss_dssp             CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHH-HHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHH-HHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46999999999999999998889999999853567655542 21110       0                         


Q ss_pred             -------------------CCC--ccCCCChHHHHHHHHHHHHhC----CcHHHHHhh------------CCCCChHHHH
Q 019307           63 -------------------PGI--KRGNFTDHEEKMIIHLQALLG----NRWAAIASY------------LPQRTDNDIK  105 (343)
Q Consensus        63 -------------------P~i--krg~WT~EED~~Ll~lv~~~G----nkWs~IA~~------------LpgRT~~qcK  105 (343)
                                         +..  +...||++||..||-++.+||    +.|..|-..            +..||+.+|.
T Consensus       203 L~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~  282 (374)
T 2y9y_A          203 LRRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELA  282 (374)
T ss_dssp             HHHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHH
T ss_pred             HHHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHH
Confidence                               111  345799999999999999999    469999432            3579999999


Q ss_pred             HHHHHHhHHHHhhhc
Q 019307          106 NYWNTHLKKKLKKLQ  120 (343)
Q Consensus       106 nRW~~~Lkkklkk~q  120 (343)
                      .|.+.+++--.+...
T Consensus       283 rRc~tLi~~IeKE~~  297 (374)
T 2y9y_A          283 RRGNTLLQCLEKEFN  297 (374)
T ss_dssp             HHHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999977544443

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=96.82  E-value=0.00058  Score=52.13  Aligned_cols=45  Identities=9%  Similarity=0.161  Sum_probs=40.5

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCCCCCceecc-cCCCCCChhhhhhhhhh
Q 019307           13 KKGPWTPEEDIILVSYIQEHGPGNWRSVPT-NTGLLRCSKSCRLRWTN   59 (343)
Q Consensus        13 kKG~WT~EEDe~L~~lV~~~G~~nW~~IA~-~l~~~Rt~kQCR~RW~n   59 (343)
                      ....||+||-++..+++..|| .+|..|++ .++ +|+..+|...|..
T Consensus         7 ~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~-~Kt~~~~v~fYY~   52 (70)
T 2crg_A            7 GMEEWSASEACLFEEALEKYG-KDFNDIRQDFLP-WKSLTSIIEYYYM   52 (70)
T ss_dssp             SSCCCCHHHHHHHHHHHHHTC-SCHHHHHHTTCS-SSCHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhC-ccHHHHHHHHcC-CCCHHHHHHHHHh
Confidence            456899999999999999999 59999999 588 9999999988764

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=96.47  E-value=0.00026  Score=55.40  Aligned_cols=49  Identities=20%  Similarity=0.547  Sum_probs=39.8

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCC---------CCCceecccC---CCCCChhhhhhhhhhcc
Q 019307           13 KKGPWTPEEDIILVSYIQEHGP---------GNWRSVPTNT---GLLRCSKSCRLRWTNYL   61 (343)
Q Consensus        13 kKG~WT~EEDe~L~~lV~~~G~---------~nW~~IA~~l---~~~Rt~kQCR~RW~n~L   61 (343)
                      +...||.+|-..|++++..+..         ..|..||..|   |..|++.||+.+|.+..
T Consensus         3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~   63 (86)
T 2ebi_A            3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL   63 (86)
T ss_dssp             CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            5689999999999999976421         1599999775   35799999999998854

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=96.10  E-value=0.0022  Score=51.73  Aligned_cols=45  Identities=20%  Similarity=0.404  Sum_probs=40.8

Q ss_pred             CCCCHHHHHHHHHHHHHhCC--CCCceecccCCCCCChhhhhhhhhhc
Q 019307           15 GPWTPEEDIILVSYIQEHGP--GNWRSVPTNTGLLRCSKSCRLRWTNY   60 (343)
Q Consensus        15 G~WT~EEDe~L~~lV~~~G~--~nW~~IA~~l~~~Rt~kQCR~RW~n~   60 (343)
                      --||.|||..|+...++.|.  ..|..||+.|+ +|++.|+.+||+..
T Consensus        34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~-Nks~nqV~~RFq~L   80 (95)
T 1ug2_A           34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFREL   80 (95)
T ss_dssp             SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS-SCCHHHHHHHHHHH
T ss_pred             EEeccccCHHHHHHHHhcCCChhHHHHHHHHHc-cCCHHHHHHHHHHH
Confidence            47999999999999999985  37999999998 89999999999873

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=95.02  E-value=0.0011  Score=50.88  Aligned_cols=45  Identities=16%  Similarity=0.347  Sum_probs=40.1

Q ss_pred             CCCCHHHHHHHHHHHHHhCCC--CCceecccCCCCCChhhhhhhhhhcc
Q 019307           15 GPWTPEEDIILVSYIQEHGPG--NWRSVPTNTGLLRCSKSCRLRWTNYL   61 (343)
Q Consensus        15 G~WT~EEDe~L~~lV~~~G~~--nW~~IA~~l~~~Rt~kQCR~RW~n~L   61 (343)
                      -.||.|||..|+..+++.|..  .|..||..+  +|++.|+.+||+..+
T Consensus        15 vlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L--nks~~QV~~RF~~Lm   61 (70)
T 2lr8_A           15 ILWTRNDDRVILLECQKRGPSSKTFAYLAAKL--DKNPNQVSERFQQLM   61 (70)
Confidence            479999999999999999863  799999988  499999999998755

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=94.09  E-value=0.035  Score=49.44  Aligned_cols=38  Identities=32%  Similarity=0.522  Sum_probs=31.6

Q ss_pred             CccCCCCCccCCCCHHHHHHHHHHHHHhCCCCCceecc
Q 019307            5 PCCDKIGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPT   42 (343)
Q Consensus         5 pccdK~~ikKG~WT~EEDe~L~~lV~~~G~~nW~~IA~   42 (343)
                      |++.++.-....||.+||..|+..|.+||.++|..|-.
T Consensus       125 ~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~  162 (211)
T 4b4c_A          125 PCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKM  162 (211)
T ss_dssp             CSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHh
Confidence            45555555566899999999999999999999998865

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=93.45  E-value=0.2  Score=37.76  Aligned_cols=48  Identities=13%  Similarity=0.071  Sum_probs=40.9

Q ss_pred             CccCCCChHHHHHHHHHHHHhCCc---HHHHHhhC--CCCChHHHHHHHHHHh
Q 019307           65 IKRGNFTDHEEKMIIHLQALLGNR---WAAIASYL--PQRTDNDIKNYWNTHL  112 (343)
Q Consensus        65 ikrg~WT~EED~~Ll~lv~~~Gnk---Ws~IA~~L--pgRT~~qcKnRW~~~L  112 (343)
                      ..+-.||+|..+..++++.++|..   +..|-+.|  +|.|..+|+.|...+.
T Consensus         5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR   57 (64)
T 1irz_A            5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFR   57 (64)
T ss_dssp             CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred             CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            346689999999999999999954   78998886  6899999999877653

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=93.22  E-value=0.044  Score=44.27  Aligned_cols=49  Identities=12%  Similarity=0.167  Sum_probs=41.3

Q ss_pred             CccCCCCHHHHHHHHHHHHHhCCCCCceecccCC----CCCChhhhhhhhhhcc
Q 019307           12 VKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTG----LLRCSKSCRLRWTNYL   61 (343)
Q Consensus        12 ikKG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~----~~Rt~kQCR~RW~n~L   61 (343)
                      ++...||.||...|++++++|. -.|..|+....    ..|+..+.++||..+.
T Consensus        28 L~~~~WT~eETd~LfdLc~~fd-lRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~   80 (93)
T 4iej_A           28 LHDDAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHIC   80 (93)
T ss_dssp             TCBTTBCHHHHHHHHHHHHHTT-TCHHHHHHHCCTTTSCCCCHHHHHHHHHHHH
T ss_pred             hCCCCCCHHHHHHHHHHHHHcC-CCeEEEeeccccCCCCCCCHHHHHHHHHHHH
Confidence            4457899999999999999999 59998887653    2699999999998764

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=93.01  E-value=0.13  Score=49.35  Aligned_cols=48  Identities=15%  Similarity=0.206  Sum_probs=42.8

Q ss_pred             cCCCChHHHHHHHHHHHHhCC-cHHHHHhhCCCCChHHHHHHHHHHhHH
Q 019307           67 RGNFTDHEEKMIIHLQALLGN-RWAAIASYLPQRTDNDIKNYWNTHLKK  114 (343)
Q Consensus        67 rg~WT~EED~~Ll~lv~~~Gn-kWs~IA~~LpgRT~~qcKnRW~~~Lkk  114 (343)
                      .+.||..+...++.++.+||. +|..||..|+|+|..+|+.++.....+
T Consensus       110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~r  158 (304)
T 1ofc_X          110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWER  158 (304)
T ss_dssp             CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHH
T ss_pred             hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence            457999999999999999994 799999999999999998887776654

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=87.92  E-value=0.3  Score=36.75  Aligned_cols=50  Identities=8%  Similarity=0.069  Sum_probs=37.5

Q ss_pred             CCccCCCCHHHHHHHHHHHHHhCCC--CCceecccCCC-CCChhhhhhhhhhc
Q 019307           11 GVKKGPWTPEEDIILVSYIQEHGPG--NWRSVPTNTGL-LRCSKSCRLRWTNY   60 (343)
Q Consensus        11 ~ikKG~WT~EEDe~L~~lV~~~G~~--nW~~IA~~l~~-~Rt~kQCR~RW~n~   60 (343)
                      ...+-.||+|..++.+++|...|..  .++.|.+.|+. +.+..++.-|.+.|
T Consensus         4 ~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKY   56 (64)
T 1irz_A            4 KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF   56 (64)
T ss_dssp             CCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred             CCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            3457899999999999999999942  15677776653 56777777766554

>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A

Probab=87.26  E-value=0.41  Score=45.22  Aligned_cols=28  Identities=32%  Similarity=0.591  Sum_probs=26.0

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCCceecc
Q 019307           15 GPWTPEEDIILVSYIQEHGPGNWRSVPT   42 (343)
Q Consensus        15 G~WT~EEDe~L~~lV~~~G~~nW~~IA~   42 (343)
                      ..|+.+||..|+..|.+||.++|..|-.
T Consensus       169 c~W~~~dD~~LLvGIykyGyG~We~Ir~  196 (270)
T 2xb0_X          169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD  196 (270)
T ss_dssp             SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence            5699999999999999999999999964

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	343
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	3e-19
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	4e-10
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	2e-18
d1w0ua_	55	a.4.1.4 (A:) Telomeric repeat binding factor 2, TR	7e-17
d1w0ua_	55	a.4.1.4 (A:) Telomeric repeat binding factor 2, TR	5e-07
d1w0ta_	52	a.4.1.4 (A:) DNA-binding domain of human telomeric	1e-16
d2ckxa1	83	a.4.1.3 (A:578-660) Telomere binding protein TBP1	1e-14
d1igna1	86	a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba	2e-14
d1igna1	86	a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba	6e-12
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	2e-13
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	2e-10
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	7e-12
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	2e-10
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	3e-11
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	2e-07
d1xc5a1	68	a.4.1.3 (A:413-480) Nuclear receptor corepressor 2	5e-11
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	4e-10
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	2e-06
d1x41a1	47	a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T	1e-09
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	3e-07
d1ug2a_	95	a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mu	3e-04

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 78.2 bits (193), Expect = 3e-19
 Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 12 VKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRP 63
          + KGPWT EED  L+  +Q++GP  W  +  +    R  K CR RW N+L P
Sbjct: 1  LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNP 51

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.8 bits (127), Expect = 4e-10
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 65  IKRGNFTDHEEKMIIHLQALLG-NRWAAIASYLPQRTDNDIKNYWNTHLK 113
           + +G +T  E++ +I L    G  RW+ IA +L  R     +  W+ HL 
Sbjct: 1   LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLN 50

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 75.6 bits (186), Expect = 2e-18
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 14 KGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRP 63
          K  WT EED  L   ++++G  +W+ +       R    C+ RW   L P
Sbjct: 1  KTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNP 49

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.5 bits (175), Expect = 7e-17
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 13 KKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLL-RCSKSCRLRWTNYLRPGI 65
          KK  WT EE   + + +Q++G GNW ++  N   + R +   + RW    R G+
Sbjct: 1  KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (103), Expect = 5e-07
 Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 3/54 (5%)

Query: 66  KRGNFTDHEEKMIIHLQALLG-NRWAAIASY--LPQRTDNDIKNYWNTHLKKKL 116
           K+  +T  E + +       G   WAAI+       RT   IK+ W T  +  +
Sbjct: 1   KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.7 bits (173), Expect = 1e-16
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 13 KKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLL-RCSKSCRLRWTNYLR 62
          K+  W  EED  L S ++++G GNW  +  +     R S   + RW    +
Sbjct: 1  KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 83

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 65.9 bits (160), Expect = 1e-14
 Identities = 15/82 (18%), Positives = 28/82 (34%), Gaps = 9/82 (10%)

Query: 16 PWTPEEDIILVSYIQEHGPGNWRSVP---TNTGLLRCSKSCRLRWTNYLR-----PGIKR 67
          P++  E   LV  ++  G G WR V     +    R     + +W   +      P  +R
Sbjct: 2  PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRR 61

Query: 68 GNFTDHEE-KMIIHLQALLGNR 88
          G     +    ++   A    +
Sbjct: 62 GEPVPQDLLDRVLAAHAYWSQQ 83

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.1 bits (161), Expect = 2e-14
 Identities = 15/90 (16%), Positives = 29/90 (32%), Gaps = 11/90 (12%)

Query: 14 KGPWTPEEDIILVSYIQEHGPG-----NWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRG 68
          K  +T EED  ++  ++++         +  +           S R R+  YL   ++  
Sbjct: 1  KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPN-HTGNSIRHRFRVYLSKRLEYV 59

Query: 69 NFTDHEEKMIIHLQALLGNRWAAIASYLPQ 98
             D   K++      L          LP 
Sbjct: 60 YEVDKFGKLVRDDDGNLIK-----TKVLPP 84

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.8 bits (142), Expect = 6e-12
 Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 6/67 (8%)

Query: 67  RGNFTDHEEKMIIHLQALLGNR------WAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQ 120
           + +FTD E++ I+ +      R      +  I+ Y+P  T N I++ +  +L K+L+ + 
Sbjct: 1   KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVY 60

Query: 121 TGSDGGQ 127
                G+
Sbjct: 61  EVDKFGK 67

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.1 bits (151), Expect = 2e-13
 Identities = 22/47 (46%), Positives = 33/47 (70%)

Query: 67  RGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLK 113
           + ++T+ E+++I      LGNRWA IA  LP RTDN IKN+WN+ ++
Sbjct: 1   KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR 47

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.3 bits (128), Expect = 2e-10
 Identities = 12/49 (24%), Positives = 18/49 (36%), Gaps = 2/49 (4%)

Query: 14 KGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLR 62
          K  WT EED I+    +  G           G  R   + +  W + +R
Sbjct: 1  KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPG--RTDNAIKNHWNSTMR 47

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.0 bits (140), Expect = 7e-12
 Identities = 9/66 (13%), Positives = 20/66 (30%), Gaps = 8/66 (12%)

Query: 14 KGPWTPEEDIILVSYIQEHGPGNW---RSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNF 70
             WT EE  +    + + G       + + +     R     +     Y +  +K G  
Sbjct: 2  SVKWTIEEKELFEQGLAKFGRRWTKISKLIGS-----RTVLQVKSYARQYFKNKVKCGLD 56

Query: 71 TDHEEK 76
           +   +
Sbjct: 57 KETPNQ 62

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (129), Expect = 2e-10
 Identities = 14/49 (28%), Positives = 24/49 (48%)

Query: 70  FTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKK 118
           +T  E+++     A  G RW  I+  +  RT   +K+Y   + K K+K 
Sbjct: 5   WTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC 53

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (135), Expect = 3e-11
 Identities = 7/49 (14%), Positives = 22/49 (44%)

Query: 66  KRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKK 114
               +T  E+ + +      G  + AI+  +  ++   +KN++  + ++
Sbjct: 4   CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 52

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (108), Expect = 2e-07
 Identities = 10/53 (18%), Positives = 19/53 (35%), Gaps = 8/53 (15%)

Query: 13 KKGPWTPEEDIILVSYIQEHGPGNW---RSVPTNTGLLRCSKSCRLRWTNYLR 62
              WT EE ++ V  I+++G         +       +     +  + NY R
Sbjct: 4  CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGN-----KSVVQVKNFFVNYRR 51

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.7 bits (134), Expect = 5e-11
 Identities = 8/49 (16%), Positives = 19/49 (38%)

Query: 66  KRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKK 114
               +++ E++            +  IAS+L ++T  +   Y+    K 
Sbjct: 16  VMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTKKN 64

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.7 bits (126), Expect = 4e-10
 Identities = 8/52 (15%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 8  DKIGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLL--RCSKSCRLRW 57
          ++    + PWT  +  +L   +Q++  G+          +  +  + C  R+
Sbjct: 6  ERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARY 57

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (100), Expect = 2e-06
 Identities = 8/51 (15%), Positives = 19/51 (37%), Gaps = 4/51 (7%)

Query: 62  RPGIKRGNFTDHEEKMIIHLQALLG----NRWAAIASYLPQRTDNDIKNYW 108
           R       +T +++K++            + W  IA  +P ++  D    +
Sbjct: 7   RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARY 57

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.1 bits (122), Expect = 1e-09
 Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 17 WTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNY 60
          WT +E++ L+  + + G GNW+ V       +  + C   +  Y
Sbjct: 4  WTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKY 46

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 44.5 bits (105), Expect = 3e-07
 Identities = 7/54 (12%), Positives = 16/54 (29%), Gaps = 3/54 (5%)

Query: 16 PWTPEEDIILVSYIQEHGPGNWRSVPTNTGLL--RCSKSCRLRWTNYLRPGIKR 67
          PW+ +E+      +  +              +  R  +  +  +   L   IK 
Sbjct: 3  PWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHY-EILVEDIKY 55

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.6 bits (87), Expect = 3e-04
 Identities = 10/74 (13%), Positives = 30/74 (40%), Gaps = 3/74 (4%)

Query: 56  RWTNYLRPGIKRGNFTDHEEKMIIHLQALLGNR---WAAIASYLPQRTDNDIKNYWNTHL 112
             +     G K   +T   +++I+ +    G +   ++ I+  L  +T  ++ + +   +
Sbjct: 22  NNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELM 81

Query: 113 KKKLKKLQTGSDGG 126
           +      ++G   G
Sbjct: 82  QLFHTACESGPSSG 95

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	343
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.73
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.72
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.67
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.65
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.64
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.57
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.56
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.53
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.53
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.46
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.45
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.45
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.44
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.42
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.42
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.36
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.33
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.3
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.29
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.28
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	99.26
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.2
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.19
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	99.09
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	99.07
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	98.89
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	98.86
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	98.66
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	98.1
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	98.0
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	97.64
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	97.51
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	97.15
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	97.02
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	96.83
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	96.45
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	95.69
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	94.7
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	93.89
d1ofcx2	128	SLIDE domain of the nucleosome remodeling ATPase I	92.24
d1ofcx1	52	SANT domain of the nucleosome remodeling ATPase IS	89.97
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	89.52

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.73  E-value=3.1e-20  Score=146.90  Aligned_cols=70  Identities=17%  Similarity=0.208  Sum_probs=64.8

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCC-----CCceecccCCCCCChhhhhhhhhhcccCCCccCCCChHHHHHHHHHHHH
Q 019307           14 KGPWTPEEDIILVSYIQEHGPG-----NWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDHEEKMIIHLQAL   84 (343)
Q Consensus        14 KG~WT~EEDe~L~~lV~~~G~~-----nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~ikrg~WT~EED~~Ll~lv~~   84 (343)
                      |++||+|||++|+++|++||..     +|..||..|+ +|+++|||+||.++|+|.+++++||.+||++|+..+..
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lp-gRt~~qcr~Rw~~~L~p~l~~~~~t~~ed~ll~d~~~~   75 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGN   75 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST-TSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSC
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcC-CCCHHHHHHHHHHHcCccccCCCCCCchhHHHHHHhhc
Confidence            6899999999999999999964     3999999999 99999999999999999999999999999998876543

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.72  E-value=8.8e-19  Score=126.20  Aligned_cols=52  Identities=42%  Similarity=0.828  Sum_probs=50.0

Q ss_pred             CccCCCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhcccCC
Q 019307           12 VKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPG   64 (343)
Q Consensus        12 ikKG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~   64 (343)
                      ++||+||+|||++|+++|++||.++|..||+.|+ +|++.||++||.++|+|+
T Consensus         1 l~rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qc~~Rw~~~L~P~   52 (52)
T d1gvda_           1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHC-CCCHHHHHHHHHhhCCCC
Confidence            5799999999999999999999889999999999 999999999999999984

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.67  E-value=8.1e-18  Score=119.93  Aligned_cols=50  Identities=30%  Similarity=0.665  Sum_probs=48.1

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhcccCC
Q 019307           14 KGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPG   64 (343)
Q Consensus        14 KG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~   64 (343)
                      |++||+|||++|+++|++||.++|..||..|+ +|++.||++||.++|+|.
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~   50 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE   50 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTST-TCCHHHHHHHHHHHHSCC
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHC-CCCHHHHHHHHHhhCCCC
Confidence            68999999999999999999989999999998 999999999999999984

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=5.3e-17  Score=114.56  Aligned_cols=47  Identities=47%  Similarity=0.899  Sum_probs=45.0

Q ss_pred             cCCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCChHHHHHHHHHHhH
Q 019307           67 RGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLK  113 (343)
Q Consensus        67 rg~WT~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lk  113 (343)
                      +.+||+|||++|+++|++||++|+.||.+|||||++|||+||+.+|+
T Consensus         1 K~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~gRt~~~~knr~~~~lr   47 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR   47 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHhhHHHHHHhHcCCCCHHHHHHHHHHHcC
Confidence            47999999999999999999999999999999999999999999874

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.64  E-value=5.9e-17  Score=116.47  Aligned_cols=50  Identities=30%  Similarity=0.645  Sum_probs=47.5

Q ss_pred             CccCCCChHHHHHHHHHHHHhC-CcHHHHHhhCCCCChHHHHHHHHHHhHH
Q 019307           65 IKRGNFTDHEEKMIIHLQALLG-NRWAAIASYLPQRTDNDIKNYWNTHLKK  114 (343)
Q Consensus        65 ikrg~WT~EED~~Ll~lv~~~G-nkWs~IA~~LpgRT~~qcKnRW~~~Lkk  114 (343)
                      +++|+||+|||++|+++|.+|| ++|..||++|++||+.||++||+++|+|
T Consensus         1 l~rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qc~~Rw~~~L~P   51 (52)
T d1gvda_           1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP   51 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCC
Confidence            4789999999999999999999 6899999999999999999999999876

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.57  E-value=8.4e-16  Score=109.33  Aligned_cols=48  Identities=31%  Similarity=0.631  Sum_probs=45.6

Q ss_pred             cCCCChHHHHHHHHHHHHhC-CcHHHHHhhCCCCChHHHHHHHHHHhHH
Q 019307           67 RGNFTDHEEKMIIHLQALLG-NRWAAIASYLPQRTDNDIKNYWNTHLKK  114 (343)
Q Consensus        67 rg~WT~EED~~Ll~lv~~~G-nkWs~IA~~LpgRT~~qcKnRW~~~Lkk  114 (343)
                      +++||+|||++|+++|.+|| ++|..||.+|+|||+.||++||+++|.|
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   49 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP   49 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCC
Confidence            57899999999999999999 6899999999999999999999999976

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.56  E-value=4.9e-16  Score=121.36  Aligned_cols=74  Identities=20%  Similarity=0.425  Sum_probs=60.6

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCCceecccC---CCCCChhhhhhhhhhccc-----CCCccCCCChHHHHHHHHHHHHhC
Q 019307           15 GPWTPEEDIILVSYIQEHGPGNWRSVPTNT---GLLRCSKSCRLRWTNYLR-----PGIKRGNFTDHEEKMIIHLQALLG   86 (343)
Q Consensus        15 G~WT~EEDe~L~~lV~~~G~~nW~~IA~~l---~~~Rt~kQCR~RW~n~L~-----P~ikrg~WT~EED~~Ll~lv~~~G   86 (343)
                      .+||+|||++|+++|.+||.++|..|++.+   ..+|++.||++||.|+|+     |..+++.|+++|   |+..|..++
T Consensus         1 r~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~~~~~~~~~~~~~p~e---ll~~v~~~~   77 (83)
T d2ckxa1           1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQD---LLDRVLAAH   77 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHH---HHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHHHhhhhccCcccccCCCCCHH---HHHHHHHHH
Confidence            389999999999999999999999999742   238999999999999984     677888999877   455555555


Q ss_pred             CcHHH
Q 019307           87 NRWAA   91 (343)
Q Consensus        87 nkWs~   91 (343)
                      .+|++
T Consensus        78 ~~wsq   82 (83)
T d2ckxa1          78 AYWSQ   82 (83)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            66753

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=9.7e-16  Score=111.09  Aligned_cols=54  Identities=31%  Similarity=0.543  Sum_probs=48.8

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCCCCCceecccCC-CCCChhhhhhhhhhcccCCCc
Q 019307           13 KKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTG-LLRCSKSCRLRWTNYLRPGIK   66 (343)
Q Consensus        13 kKG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~-~~Rt~kQCR~RW~n~L~P~ik   66 (343)
                      |+++||+|||++|+++|++||.++|..|+..++ .+|++.||++||.++++|+++
T Consensus         1 Kr~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~Rt~~q~k~Rwrn~~k~~~N   55 (55)
T d1w0ua_           1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN   55 (55)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHHHhhcCCCCcCHHHHHHHHHHHhcCCCC
Confidence            578999999999999999999999999998732 289999999999999998764

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.53  E-value=2.2e-15  Score=118.69  Aligned_cols=64  Identities=25%  Similarity=0.444  Sum_probs=58.0

Q ss_pred             cCCCChHHHHHHHHHHHHhCCc------HHHHHhhCCCCChHHHHHHHHHHhHHHHhhhcCCCCCCCCCC
Q 019307           67 RGNFTDHEEKMIIHLQALLGNR------WAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQTGSDGGQNNQ  130 (343)
Q Consensus        67 rg~WT~EED~~Ll~lv~~~Gnk------Ws~IA~~LpgRT~~qcKnRW~~~Lkkklkk~q~~~~~~~~~~  130 (343)
                      ++.||+|||++|+++|.+||.+      |..||.+|||||++|||+||+++|.+.+++...+.+++....
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lpgRt~~qcr~Rw~~~L~p~l~~~~~t~~ed~ll~   70 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVR   70 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCB
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcCCCCHHHHHHHHHHHcCccccCCCCCCchhHHHH
Confidence            5799999999999999999964      999999999999999999999999999999888877665433

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=2.9e-14  Score=103.17  Aligned_cols=51  Identities=27%  Similarity=0.403  Sum_probs=46.5

Q ss_pred             ccCCCChHHHHHHHHHHHHhC-CcHHHHHhh--CCCCChHHHHHHHHHHhHHHH
Q 019307           66 KRGNFTDHEEKMIIHLQALLG-NRWAAIASY--LPQRTDNDIKNYWNTHLKKKL  116 (343)
Q Consensus        66 krg~WT~EED~~Ll~lv~~~G-nkWs~IA~~--LpgRT~~qcKnRW~~~Lkkkl  116 (343)
                      ++.+||+|||++|+++|++|| ++|..|++.  |++||+.||++||++++++.+
T Consensus         1 Kr~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~Rt~~q~k~Rwrn~~k~~~   54 (55)
T d1w0ua_           1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM   54 (55)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHHHhhcCCCCcCHHHHHHHHHHHhcCCC
Confidence            477999999999999999999 589999998  569999999999999988754

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.45  E-value=1.2e-14  Score=102.23  Aligned_cols=47  Identities=26%  Similarity=0.495  Sum_probs=44.3

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhccc
Q 019307           14 KGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLR   62 (343)
Q Consensus        14 KG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~   62 (343)
                      |++||+|||++|+++|++||. +|..||..|+ +|++.||+.||.++|+
T Consensus         1 K~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~-gRt~~~~knr~~~~lr   47 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLGN-RWAEIAKLLP-GRTDNAIKNHWNSTMR   47 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSS-CHHHHHTTCT-TCCHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHhh-HHHHHHhHcC-CCCHHHHHHHHHHHcC
Confidence            689999999999999999995 8999999999 9999999999998873

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=1e-14  Score=104.48  Aligned_cols=49  Identities=31%  Similarity=0.434  Sum_probs=44.5

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCCCCCceecccCC-CCCChhhhhhhhhhcc
Q 019307           13 KKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTG-LLRCSKSCRLRWTNYL   61 (343)
Q Consensus        13 kKG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~-~~Rt~kQCR~RW~n~L   61 (343)
                      |+++||+|||++|+++|.+||.++|..|+..++ .+|++.||++||.++.
T Consensus         1 kr~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~   50 (52)
T d1w0ta_           1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMK   50 (52)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHHHHHH
Confidence            589999999999999999999999999998654 3799999999999865

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=6.2e-14  Score=100.39  Aligned_cols=48  Identities=27%  Similarity=0.349  Sum_probs=43.6

Q ss_pred             ccCCCChHHHHHHHHHHHHhCC-cHHHHHhhCC--CCChHHHHHHHHHHhH
Q 019307           66 KRGNFTDHEEKMIIHLQALLGN-RWAAIASYLP--QRTDNDIKNYWNTHLK  113 (343)
Q Consensus        66 krg~WT~EED~~Ll~lv~~~Gn-kWs~IA~~Lp--gRT~~qcKnRW~~~Lk  113 (343)
                      ++++||+|||+.|+++|.+||. +|..|+..++  +||+.||++||+++.+
T Consensus         1 kr~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~K   51 (52)
T d1w0ta_           1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (52)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHHHHHHC
Confidence            5789999999999999999995 8999999854  9999999999998754

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.3e-13  Score=102.07  Aligned_cols=53  Identities=26%  Similarity=0.353  Sum_probs=48.6

Q ss_pred             cCCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCChHHHHHHHHHHhHHHHhhh
Q 019307           67 RGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKL  119 (343)
Q Consensus        67 rg~WT~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkkklkk~  119 (343)
                      ...||+|||.+|++++..||.+|..||.+||+||+.||++||+.++++..+..
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~ry~~~~~~~~k~~   54 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCG   54 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCSC
T ss_pred             CCCCCHHHHHHHHHHHHHhcchHHHHHHHcCCCCHHHHHHHHHHHHHHHHhcC
Confidence            35799999999999999999999999999999999999999999998866543

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.7e-14  Score=101.37  Aligned_cols=44  Identities=25%  Similarity=0.690  Sum_probs=42.5

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhc
Q 019307           16 PWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNY   60 (343)
Q Consensus        16 ~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~   60 (343)
                      .||+|||++|+++|++||.++|..||..|+ +|++.||+.||.++
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia~~~~-~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKY   46 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTCHHHHHHHHT-TSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCccHHHHHHHcC-CCCHHHHHHHHHHh
Confidence            599999999999999999999999999999 99999999999986

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=3.6e-13  Score=94.49  Aligned_cols=43  Identities=16%  Similarity=0.337  Sum_probs=41.0

Q ss_pred             CCChHHHHHHHHHHHHhC-CcHHHHHhhCCCCChHHHHHHHHHH
Q 019307           69 NFTDHEEKMIIHLQALLG-NRWAAIASYLPQRTDNDIKNYWNTH  111 (343)
Q Consensus        69 ~WT~EED~~Ll~lv~~~G-nkWs~IA~~LpgRT~~qcKnRW~~~  111 (343)
                      .||.|||.+|+++|.+|| ++|..||.+|++||+.||+.||.++
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia~~~~~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKY   46 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCccHHHHHHHcCCCCHHHHHHHHHHh
Confidence            599999999999999999 5899999999999999999999875

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=7.5e-13  Score=96.88  Aligned_cols=50  Identities=16%  Similarity=0.293  Sum_probs=45.6

Q ss_pred             cCCCccCCCChHHHHHHHHHHHHhCC----cHHHHHhhCCCCChHHHHHHHHHH
Q 019307           62 RPGIKRGNFTDHEEKMIIHLQALLGN----RWAAIASYLPQRTDNDIKNYWNTH  111 (343)
Q Consensus        62 ~P~ikrg~WT~EED~~Ll~lv~~~Gn----kWs~IA~~LpgRT~~qcKnRW~~~  111 (343)
                      .+...+++||+|||.+|+++|.+||.    +|..||.+|||||+.||++||..+
T Consensus         7 ~~~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~~Rt~~qc~~R~~~L   60 (60)
T d2cqra1           7 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLL   60 (60)
T ss_dssp             TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHH
T ss_pred             cCCcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcCCCCHHHHHHHHHHC
Confidence            45667889999999999999999995    599999999999999999999864

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=5.3e-13  Score=97.72  Aligned_cols=51  Identities=18%  Similarity=0.433  Sum_probs=46.8

Q ss_pred             CCCCCccCCCCHHHHHHHHHHHHHhCCC---CCceecccCCCCCChhhhhhhhhh
Q 019307            8 DKIGVKKGPWTPEEDIILVSYIQEHGPG---NWRSVPTNTGLLRCSKSCRLRWTN   59 (343)
Q Consensus         8 dK~~ikKG~WT~EEDe~L~~lV~~~G~~---nW~~IA~~l~~~Rt~kQCR~RW~n   59 (343)
                      +++..++++||+|||++|+++|..||.+   +|..||..|| +|+..||+.||..
T Consensus         6 ~~~~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~-~Rt~~qc~~R~~~   59 (60)
T d2cqra1           6 ERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKL   59 (60)
T ss_dssp             CTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHH
T ss_pred             ccCCcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcC-CCCHHHHHHHHHH
Confidence            5677889999999999999999999976   4999999999 9999999999964

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.29  E-value=2e-12  Score=95.53  Aligned_cols=52  Identities=23%  Similarity=0.436  Sum_probs=44.9

Q ss_pred             CCCChHHHHHHHHHHHHhCC----cHHHHHhhCCCCChHHHHHHHHHHhHHHHhhhc
Q 019307           68 GNFTDHEEKMIIHLQALLGN----RWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQ  120 (343)
Q Consensus        68 g~WT~EED~~Ll~lv~~~Gn----kWs~IA~~LpgRT~~qcKnRW~~~Lkkklkk~q  120 (343)
                      .+||+|||.+|++++++||.    +|.+||.+|||||.+||++||+. |.+.++++.
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~gRt~~qc~~r~~~-L~~dik~ie   57 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEI-LVEDIKYIE   57 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHH-HHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcCCCCHHHHHHHHHH-HHHHhhccc
Confidence            47999999999999999995    59999999999999999999965 445565543

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1.5e-13  Score=101.67  Aligned_cols=58  Identities=19%  Similarity=0.319  Sum_probs=52.6

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhcccCCCccCCCChHH
Q 019307           15 GPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDHE   74 (343)
Q Consensus        15 G~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~ikrg~WT~EE   74 (343)
                      .+||+|||++|+++|..|| .+|..||..|+ +|+..||+.||.+++++..+.+.+...+
T Consensus         3 ~~WT~eEd~~l~~~~~~~G-~~W~~Ia~~~~-~Rt~~q~k~ry~~~~~~~~k~~~~~~~~   60 (65)
T d2cu7a1           3 VKWTIEEKELFEQGLAKFG-RRWTKISKLIG-SRTVLQVKSYARQYFKNKVKCGLDKETP   60 (65)
T ss_dssp             CCCCHHHHHHHHHHHHHTC-SCHHHHHHHHS-SSCHHHHHHHHHHHHHHHSCSCTTCCCS
T ss_pred             CCCCHHHHHHHHHHHHHhc-chHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhcCCCCCCc
Confidence            5799999999999999999 69999999999 9999999999999998887777766544

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.26  E-value=3.7e-12  Score=101.59  Aligned_cols=69  Identities=12%  Similarity=0.161  Sum_probs=60.8

Q ss_pred             CCChhhhhhhhhhcccCCCccCCCChHHHHHHHHHHHHhCCc---HHHHHhhCCCCChHHHHHHHHHHhHHH
Q 019307           47 LRCSKSCRLRWTNYLRPGIKRGNFTDHEEKMIIHLQALLGNR---WAAIASYLPQRTDNDIKNYWNTHLKKK  115 (343)
Q Consensus        47 ~Rt~kQCR~RW~n~L~P~ikrg~WT~EED~~Ll~lv~~~Gnk---Ws~IA~~LpgRT~~qcKnRW~~~Lkkk  115 (343)
                      ..+..++..++.+...++.....||.|||++||+.++++|.+   |..||+.|+||+++|||+||..+++-.
T Consensus        13 ~~t~~~v~A~n~~~~s~G~~~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L~~Rs~~qvr~Rf~~Lm~lf   84 (95)
T d1ug2a_          13 KASEATVCANNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLF   84 (95)
T ss_dssp             CCCCCCCCCCCCCCCCCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHH
T ss_pred             CCCccccccccCccCCCCCccCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            456666777777777788888899999999999999999987   999999999999999999999887653

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.20  E-value=1.4e-11  Score=95.73  Aligned_cols=52  Identities=25%  Similarity=0.399  Sum_probs=46.7

Q ss_pred             CCChHHHHHHHHHHHHhC-CcHHHHHhh----CCCCChHHHHHHHHHHhHHHHhhhc
Q 019307           69 NFTDHEEKMIIHLQALLG-NRWAAIASY----LPQRTDNDIKNYWNTHLKKKLKKLQ  120 (343)
Q Consensus        69 ~WT~EED~~Ll~lv~~~G-nkWs~IA~~----LpgRT~~qcKnRW~~~Lkkklkk~q  120 (343)
                      +||.|||+.|+++|.+|| ++|..|++.    +++||+.|||+||+++|+......+
T Consensus         2 ~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~~~~~~   58 (83)
T d2ckxa1           2 PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQ   58 (83)
T ss_dssp             CCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGG
T ss_pred             CCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHHHhhhhccCcc
Confidence            899999999999999999 589999985    6899999999999999988765443

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.19  E-value=8.7e-13  Score=97.49  Aligned_cols=44  Identities=14%  Similarity=0.334  Sum_probs=40.8

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCC---CceecccCCCCCChhhhhhhhhh
Q 019307           15 GPWTPEEDIILVSYIQEHGPGN---WRSVPTNTGLLRCSKSCRLRWTN   59 (343)
Q Consensus        15 G~WT~EEDe~L~~lV~~~G~~n---W~~IA~~l~~~Rt~kQCR~RW~n   59 (343)
                      .+||+|||++|+++|+.||.++   |..||..|+ +|+..||+.||..
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~-gRt~~qc~~r~~~   48 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEI   48 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcC-CCCHHHHHHHHHH
Confidence            5899999999999999999764   999999999 9999999999954

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=3.6e-11  Score=88.87  Aligned_cols=47  Identities=15%  Similarity=0.324  Sum_probs=43.9

Q ss_pred             cCCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCChHHHHHHHHHHhH
Q 019307           67 RGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLK  113 (343)
Q Consensus        67 rg~WT~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lk  113 (343)
                      +..||++||.+|++++..||.+|..||.+||+||..||++||+.+.+
T Consensus         5 ~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~kt~~q~~~~y~~~~k   51 (65)
T d2iw5b1           5 NARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRR   51 (65)
T ss_dssp             CSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred             CCCCCHHHHHHHHHHHHHhCchHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence            45799999999999999999999999999999999999999987654

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=3.9e-11  Score=89.55  Aligned_cols=47  Identities=15%  Similarity=0.188  Sum_probs=43.4

Q ss_pred             CccCCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCChHHHHHHHHHH
Q 019307           65 IKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTH  111 (343)
Q Consensus        65 ikrg~WT~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~  111 (343)
                      ....+||+|||.+|++++.+||.+|..||.+||+||..||++||...
T Consensus        15 ~~~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~rt~~q~~~~yy~~   61 (68)
T d1xc5a1          15 QVMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLT   61 (68)
T ss_dssp             TTTTCCCTTTHHHHHHHHHHTTSCSSSHHHHTTTSCHHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHHHHHCCcHHHHHHHcCCCCHHHHHHHHHHH
Confidence            34568999999999999999999999999999999999999999754

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=2.6e-10  Score=85.00  Aligned_cols=50  Identities=12%  Similarity=0.129  Sum_probs=44.5

Q ss_pred             CCCccCCCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhcc
Q 019307           10 IGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYL   61 (343)
Q Consensus        10 ~~ikKG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L   61 (343)
                      ......+||+|||++|+++|..|| .+|..||..|+ +|+..||+.||....
T Consensus        13 ~~~~~~~WT~eE~~~f~~~~~~~G-~~w~~Ia~~~~-~rt~~q~~~~yy~~k   62 (68)
T d1xc5a1          13 DRQVMNMWSEQEKETFREKFMQHP-KNFGLIASFLE-RKTVAECVLYYYLTK   62 (68)
T ss_dssp             STTTTTCCCTTTHHHHHHHHHHTT-SCSSSHHHHTT-TSCHHHHHHHHHHHT
T ss_pred             cccCCCCCCHHHHHHHHHHHHHHC-CcHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence            344557899999999999999999 59999999999 999999999997643

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=3.1e-10  Score=83.70  Aligned_cols=47  Identities=23%  Similarity=0.486  Sum_probs=43.6

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhccc
Q 019307           14 KGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLR   62 (343)
Q Consensus        14 KG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~   62 (343)
                      ..+||+|||++|.+++..|| .+|..||..|+ +|+..||+.||.++.+
T Consensus         5 ~~~WT~eE~~~f~~~~~~~G-~~w~~Ia~~~~-~kt~~q~~~~y~~~~k   51 (65)
T d2iw5b1           5 NARWTTEEQLLAVQAIRKYG-RDFQAISDVIG-NKSVVQVKNFFVNYRR   51 (65)
T ss_dssp             CSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred             CCCCCHHHHHHHHHHHHHhC-chHHHHHHHcC-CCCHHHHHHHHHHHHh
Confidence            56899999999999999999 58999999999 9999999999998753

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.66  E-value=3e-09  Score=84.52  Aligned_cols=51  Identities=22%  Similarity=0.405  Sum_probs=44.9

Q ss_pred             CCCccCCCCHHHHHHHHHHHHHhCCCC--CceecccCCCCCChhhhhhhhhhcc
Q 019307           10 IGVKKGPWTPEEDIILVSYIQEHGPGN--WRSVPTNTGLLRCSKSCRLRWTNYL   61 (343)
Q Consensus        10 ~~ikKG~WT~EEDe~L~~lV~~~G~~n--W~~IA~~l~~~Rt~kQCR~RW~n~L   61 (343)
                      .+.+...||.|||..|++.++++|...  |..|++.|+ +|++.|||.||+..+
T Consensus        29 ~G~~~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L~-~Rs~~qvr~Rf~~Lm   81 (95)
T d1ug2a_          29 TGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFRELM   81 (95)
T ss_dssp             CCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS-SCCHHHHHHHHHHHH
T ss_pred             CCCccCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence            355677999999999999999999643  999999998 999999999997643

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=1.9e-06  Score=62.61  Aligned_cols=44  Identities=18%  Similarity=0.262  Sum_probs=40.0

Q ss_pred             CCCChHHHHHHHHHHHHhC----CcHHHHHhhCCCCChHHHHHHHHHHh
Q 019307           68 GNFTDHEEKMIIHLQALLG----NRWAAIASYLPQRTDNDIKNYWNTHL  112 (343)
Q Consensus        68 g~WT~EED~~Ll~lv~~~G----nkWs~IA~~LpgRT~~qcKnRW~~~L  112 (343)
                      ..||.+|+.+|.+++.+|.    .+|..||.+| |||..+|..|++.+.
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~v-gkt~~ev~~~~k~l~   49 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLK   49 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH-CCCHHHHHHHHHHHH
Confidence            4799999999999999997    5799999999 999999999997643

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.00  E-value=5.1e-06  Score=59.51  Aligned_cols=43  Identities=16%  Similarity=0.279  Sum_probs=39.8

Q ss_pred             CCCChHHHHHHHHHHHHhCCcHHHHHhh-CCCCChHHHHHHHHH
Q 019307           68 GNFTDHEEKMIIHLQALLGNRWAAIASY-LPQRTDNDIKNYWNT  110 (343)
Q Consensus        68 g~WT~EED~~Ll~lv~~~GnkWs~IA~~-LpgRT~~qcKnRW~~  110 (343)
                      ..||+||-.++.+.+..||.+|..|++. +|+||..||.++|..
T Consensus         2 d~WT~eE~~~F~~~~~~yGKdf~~I~~~~v~~Ks~~~~v~fYY~   45 (57)
T d2crga1           2 EEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM   45 (57)
T ss_dssp             CCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHcccHHHHHHHHcCCCCHHHHHHHHHH
Confidence            3699999999999999999999999985 699999999999864

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=5.2e-06  Score=60.22  Aligned_cols=44  Identities=18%  Similarity=0.359  Sum_probs=39.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCCC---CCceecccCCCCCChhhhhhhhhhc
Q 019307           15 GPWTPEEDIILVSYIQEHGPG---NWRSVPTNTGLLRCSKSCRLRWTNY   60 (343)
Q Consensus        15 G~WT~EEDe~L~~lV~~~G~~---nW~~IA~~l~~~Rt~kQCR~RW~n~   60 (343)
                      +.||+||+.+|.+++.+|..+   .|..||..+|  |+..+|..||...
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~vg--kt~~ev~~~~k~l   48 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELG--RSVTDVTTKAKQL   48 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHT--SCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHC--CCHHHHHHHHHHH
Confidence            579999999999999999754   5999999995  9999999999754

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.51  E-value=2.2e-05  Score=56.04  Aligned_cols=43  Identities=9%  Similarity=0.267  Sum_probs=39.0

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCCceeccc-CCCCCChhhhhhhhhhc
Q 019307           16 PWTPEEDIILVSYIQEHGPGNWRSVPTN-TGLLRCSKSCRLRWTNY   60 (343)
Q Consensus        16 ~WT~EEDe~L~~lV~~~G~~nW~~IA~~-l~~~Rt~kQCR~RW~n~   60 (343)
                      .||+||-.++.+++..|| .+|..|++. +| +|+..+|...|...
T Consensus         3 ~WT~eE~~~F~~~~~~yG-Kdf~~I~~~~v~-~Ks~~~~v~fYY~~   46 (57)
T d2crga1           3 EWSASEACLFEEALEKYG-KDFNDIRQDFLP-WKSLTSIIEYYYMW   46 (57)
T ss_dssp             CCCHHHHHHHHHHHHHTC-SCHHHHHHTTCS-SSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHc-ccHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence            699999999999999999 599999975 57 99999999988754

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.15  E-value=0.00031  Score=50.61  Aligned_cols=47  Identities=28%  Similarity=0.433  Sum_probs=40.5

Q ss_pred             cCCCChHHHHHHHHHHHHhC--------Cc-HHHHHh-hCCCCChHHHHHHHHHHhH
Q 019307           67 RGNFTDHEEKMIIHLQALLG--------NR-WAAIAS-YLPQRTDNDIKNYWNTHLK  113 (343)
Q Consensus        67 rg~WT~EED~~Ll~lv~~~G--------nk-Ws~IA~-~LpgRT~~qcKnRW~~~Lk  113 (343)
                      |.+||.+||+.|++.|+++.        +. |.++++ .+|.+|-...|+||...|+
T Consensus         2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~~HtwQSwrdRY~K~L~   58 (59)
T d1fexa_           2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc
Confidence            56899999999999999874        22 999996 6799999999999987764

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.02  E-value=0.00095  Score=45.47  Aligned_cols=45  Identities=24%  Similarity=0.437  Sum_probs=39.7

Q ss_pred             cCCCChHHHHHHHHHHHHhCCcHHHHHhhC---CCCChHHHHHHHHHH
Q 019307           67 RGNFTDHEEKMIIHLQALLGNRWAAIASYL---PQRTDNDIKNYWNTH  111 (343)
Q Consensus        67 rg~WT~EED~~Ll~lv~~~GnkWs~IA~~L---pgRT~~qcKnRW~~~  111 (343)
                      |..||+||-.-|.+.|+.+|+.|..|-=.+   |||+..++..+|..+
T Consensus         1 Rknft~eEv~YL~~GVK~~G~~WNsILWs~PF~~GR~~vdLA~Ky~~l   48 (49)
T d1x58a1           1 RKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRL   48 (49)
T ss_dssp             SSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHhcchhhhhhhccCCCCCchhhHHHHHHHhh
Confidence            457999999999999999999999996544   799999999988765

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.83  E-value=0.00038  Score=50.11  Aligned_cols=48  Identities=19%  Similarity=0.439  Sum_probs=39.8

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCC--------CCceecc-cCCCCCChhhhhhhhhhccc
Q 019307           14 KGPWTPEEDIILVSYIQEHGPG--------NWRSVPT-NTGLLRCSKSCRLRWTNYLR   62 (343)
Q Consensus        14 KG~WT~EEDe~L~~lV~~~G~~--------nW~~IA~-~l~~~Rt~kQCR~RW~n~L~   62 (343)
                      +-+||.|||+.|+++|.++...        =|+.+++ .++ .++..+-|+||.++|+
T Consensus         2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~-~HtwQSwrdRY~K~L~   58 (59)
T d1fexa_           2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLT-QHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSS-SCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCC-CCCHHHHHHHHHHHhc
Confidence            4579999999999999998532        2988884 566 8999999999998874

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.45  E-value=0.0035  Score=45.56  Aligned_cols=47  Identities=13%  Similarity=0.104  Sum_probs=39.5

Q ss_pred             ccCCCChHHHHHHHHHHHHhCCcH---HHHHhh--CCCCChHHHHHHHHHHh
Q 019307           66 KRGNFTDHEEKMIIHLQALLGNRW---AAIASY--LPQRTDNDIKNYWNTHL  112 (343)
Q Consensus        66 krg~WT~EED~~Ll~lv~~~GnkW---s~IA~~--LpgRT~~qcKnRW~~~L  112 (343)
                      .+-.||+||.+..++++..+|..|   ..|...  ++++|..||+.+...+.
T Consensus         6 ~R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQKYr   57 (64)
T d1irza_           6 PRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFR   57 (64)
T ss_dssp             SSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            355799999999999999999887   477766  48999999999876653

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.69  E-value=0.0031  Score=45.82  Aligned_cols=48  Identities=8%  Similarity=0.118  Sum_probs=36.8

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCCCCC--ceecccCCC-CCChhhhhhhhhhc
Q 019307           13 KKGPWTPEEDIILVSYIQEHGPGNW--RSVPTNTGL-LRCSKSCRLRWTNY   60 (343)
Q Consensus        13 kKG~WT~EEDe~L~~lV~~~G~~nW--~~IA~~l~~-~Rt~kQCR~RW~n~   60 (343)
                      .+-.||+||.++++++|..+|...|  +.|...|+. +++..||+-|.+.|
T Consensus         6 ~R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQKY   56 (64)
T d1irza_           6 PRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF   56 (64)
T ss_dssp             SSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            4668999999999999999996444  356555432 67889998876665

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.70  E-value=0.043  Score=40.31  Aligned_cols=47  Identities=13%  Similarity=0.249  Sum_probs=41.0

Q ss_pred             ccCCCChHHHHHHHHHHHHhCCc----HHHHHhhCCCCChHHHHHHHHHHh
Q 019307           66 KRGNFTDHEEKMIIHLQALLGNR----WAAIASYLPQRTDNDIKNYWNTHL  112 (343)
Q Consensus        66 krg~WT~EED~~Ll~lv~~~Gnk----Ws~IA~~LpgRT~~qcKnRW~~~L  112 (343)
                      ..+.|+++|=++|-.++..+..+    |..||..+..|++.+|...|...+
T Consensus         7 ~d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VGtRSaeECQ~ky~~~~   57 (73)
T d1wgxa_           7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENP   57 (73)
T ss_dssp             SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSS
T ss_pred             cccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHccCCHHHHHHHHHhCc
Confidence            45689999999999999988743    999999999999999999887643

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.89  E-value=0.029  Score=41.27  Aligned_cols=50  Identities=22%  Similarity=0.427  Sum_probs=43.1

Q ss_pred             ccCCCCHHHHHHHHHHHHHhC---CCCCceecccCCCCCChhhhhhhhhhcccC
Q 019307           13 KKGPWTPEEDIILVSYIQEHG---PGNWRSVPTNTGLLRCSKSCRLRWTNYLRP   63 (343)
Q Consensus        13 kKG~WT~EEDe~L~~lV~~~G---~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P   63 (343)
                      ..+.|+++|=++|-.++....   ++-|..||..+| .|+...|...|+..+.-
T Consensus         7 ~d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VG-tRSaeECQ~ky~~~~~~   59 (73)
T d1wgxa_           7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPRG   59 (73)
T ss_dssp             SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSSS
T ss_pred             cccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHc-cCCHHHHHHHHHhCccc
Confidence            457999999999999998654   457999999999 99999999999987653

>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: SLIDE domain
domain: SLIDE domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=92.24  E-value=0.11  Score=42.08  Aligned_cols=53  Identities=19%  Similarity=0.399  Sum_probs=42.8

Q ss_pred             CCccCCCChHHHHHHHHHHHHhC-Cc---HHHHHh------------hCCCCChHHHHHHHHHHhHHHH
Q 019307           64 GIKRGNFTDHEEKMIIHLQALLG-NR---WAAIAS------------YLPQRTDNDIKNYWNTHLKKKL  116 (343)
Q Consensus        64 ~ikrg~WT~EED~~Ll~lv~~~G-nk---Ws~IA~------------~LpgRT~~qcKnRW~~~Lkkkl  116 (343)
                      ..++..+|+|||.-|+-++.+|| .+   |..|-.            ++..||+..|..|.+++|+--.
T Consensus        46 ~nk~k~yteeEDRfLl~~~~~~G~~~~~~~e~ir~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i~  114 (128)
T d1ofcx2          46 NNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITLIE  114 (128)
T ss_dssp             TCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred             ccCCCccCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHhCcchhhhhHhccCCHHHHHHHHHHHHHHHH
Confidence            44555799999999999999999 44   988743            2357999999999999887643

>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: SANT domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=89.97  E-value=0.36  Score=33.26  Aligned_cols=44  Identities=16%  Similarity=0.242  Sum_probs=38.6

Q ss_pred             CCChHHHHHHHHHHHHhC-CcHHHHHhhCCCCChHHHHHHHHHHh
Q 019307           69 NFTDHEEKMIIHLQALLG-NRWAAIASYLPQRTDNDIKNYWNTHL  112 (343)
Q Consensus        69 ~WT~EED~~Ll~lv~~~G-nkWs~IA~~LpgRT~~qcKnRW~~~L  112 (343)
                      .|+.-|=..++.+..+|| .+-..||..|.|+|..+|+.+.+..-
T Consensus         1 ~WnrrdF~~Fi~a~ekyGR~d~~~Ia~e~~~Kt~eEV~~Y~~vFw   45 (52)
T d1ofcx1           1 AWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFW   45 (52)
T ss_dssp             TCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            489999999999999999 58999999999999999998765433

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.52  E-value=0.1  Score=35.20  Aligned_cols=45  Identities=18%  Similarity=0.211  Sum_probs=37.2

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCCceecccCC--CCCChhhhhhhhhh
Q 019307           14 KGPWTPEEDIILVSYIQEHGPGNWRSVPTNTG--LLRCSKSCRLRWTN   59 (343)
Q Consensus        14 KG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~--~~Rt~kQCR~RW~n   59 (343)
                      +..||.||-.-|...|+++| ..|..|-=.+|  .||+......+|..
T Consensus         1 Rknft~eEv~YL~~GVK~~G-~~WNsILWs~PF~~GR~~vdLA~Ky~~   47 (49)
T d1x58a1           1 RKDFTKEEVNYLFHGVKTMG-NHWNSILWSFPFQKGRRAVDLAHKYHR   47 (49)
T ss_dssp             SSSCCHHHHHHHHHHHHHHC-SCHHHHHHHSCCCTTCCHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHhc-chhhhhhhccCCCCCchhhHHHHHHHh
Confidence            45799999999999999999 69999875554  37888888777764