Citrus Sinensis ID: 019343

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340--
MVRRQQNDLETPRFTSLILFFLALISFAVVYTFLSFIFRPNGHPLDAKFQSFTVAEEGDQIGQCCQGIENLEFWGGAVKWGSDFKFNSSRMCCEACKAMCTGNDGPCLCDTWVFCGNKKSCGSRFGECWLKKQKDVLAPDRQDAGQKVMWTSGLIFGKGQGIVGLETEYGTLHIKLFPECAPHSVAYILELLSLRHCAGCQFHRAESRGQSWDIEGNHIKNAPYGPPFGLIQGTLEALGTAFKKIPREVCPSIRRGSVAWIGSGPEFFISLSNHEEWKNSYTVFGSVLPQNMEIVEKIAQLPTKSDVWNNINVTVLKKPVPLRLRRLKKSSLGGVDANVRQE
ccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccEEEccccccccccccEEccccccccccccccccccccccccccccccccEEEEEEcccEEEEEEcccccHHHHHHHHHHHHcccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccEEEEccccccccccccEEEEEccccHHHHHHHHcccccccccccccEEEEEEEEEEEEEEEccccccccccccccc
ccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccEEEEccccccccHHHHHHHHHHHcccccccccccEEEEEccHHHccccccccEEEccccccccccccccccccEEEEEEEccccEEEEEEccccEEEEEEcccHcHHHHHHHHHHHHccccccEEEEEEcccccccccccccccccccccccEEEcccccccccccccccccccccEEcEEEEEccccccEEEEEcccccccccEEEEEEEccccHHHHHHHHcccccccccccccEEEEcccEcEEEEEEccccccccccccccc
mvrrqqndletprfTSLILFFLALISFAVVYTFLSfifrpnghpldakfqsftvaeegdqigqccqgienlefwggavkwgsdfkfnssrmCCEACkamctgndgpclcdtwvfcgnkkscgsrfgecwlkkqkdvlapdrqdagqkvmwtsglifgkgqgivgleteygtlhiklfpecapHSVAYILELLSLRHcagcqfhraesrgqswdiegnhiknapygppfglIQGTLEALGTAFkkiprevcpsirrgsvawigsgPEFFISLSNHEEWKNSYTVFGSVLPQNMEIVEKIAqlptksdvwnninvtvlkkpvplrlrrlkksslggvdanvrqe
mvrrqqndletprFTSLILFFLALISFAVVYTFLSFIFRPNGHPLDAKFQSFTVAEEGDQIGQCCQGIENLEFWGGAVKWGSDFKFNSSRMCCEACKAMCTGNDGPCLCDTWVFCGNKKSCGSRFGECWLKKQKDVLAPDRQDAGQKVMWTSGLIFGKGQGIVGLETEYGTLHIKLFPECAPHSVAYILELLSLRHCAGCQFHRAESRGQSWDIEGNHIKNAPYGPPFGLIQGTLEALGTAFKKIPREVCPSIRRGSVAWIGSGPEFFISLSNHEEWKNSYTVFGSVLPQNMEIVEKIAQlptksdvwnninvtvlkkpvplrlrrlkksslggvdanvrqe
MVRRQQNDLETPRftslilfflalisfaVVYTFLSFIFRPNGHPLDAKFQSFTVAEEGDQIGQCCQGIENLEFWGGAVKWGSDFKFNSSRMCCEACKAMCTGNDGPCLCDTWVFCGNKKSCGSRFGECWLKKQKDVLAPDRQDAGQKVMWTSGLIFGKGQGIVGLETEYGTLHIKLFPECAPHSVAYILELLSLRHCAGCQFHRAESRGQSWDIEGNHIKNAPYGPPFGLIQGTLEALGTAFKKIPREVCPSIRRGSVAWIGSGPEFFISLSNHEEWKNSYTVFGSVLPQNMEIVEKIAQLPTKSDVWNNINVTvlkkpvplrlrrlkksslGGVDANVRQE
************RFTSLILFFLALISFAVVYTFLSFIFRPNGHPLDAKFQSFTVAEEGDQIGQCCQGIENLEFWGGAVKWGSDFKFNSSRMCCEACKAMCTGNDGPCLCDTWVFCGNKKSCGSRFGECWLKKQKDVLAPDRQDAGQKVMWTSGLIFGKGQGIVGLETEYGTLHIKLFPECAPHSVAYILELLSLRHCAGCQFHRAESRGQSWDIEGNHIKNAPYGPPFGLIQGTLEALGTAFKKIPREVCPSIRRGSVAWIGSGPEFFISLSNHEEWKNSYTVFGSVLPQNMEIVEKIAQLPTKSDVWNNINVTVLKKPVPLRLR*****************
**************TSLILFFLALISFAVVYTFLSFI**************************CCQGIENLEFWGGAVKWGSDFKFNSSRMCCEACKAMC***D*PCLCDTWVFCGNKKSCGSRFG*****************************FGKGQGIVGLETEYGTLHIKLFPECAPHSVAYILELLSLRHCAGCQFHRAESRGQSWDIEGNHIKNAPYGPPFGLIQGTLEALGTAFKKIPREVCPSIRRGSVAWIGSGPEFFISLSNHEEWKNSYTVFGSVLPQNMEIVEKIAQLPTKSDVWNNINVTVLKKPVPLRL******************
*********ETPRFTSLILFFLALISFAVVYTFLSFIFRPNGHPLDAKFQSFTVAEEGDQIGQCCQGIENLEFWGGAVKWGSDFKFNSSRMCCEACKAMCTGNDGPCLCDTWVFCGNKKSCGSRFGECWLKKQKDVLAPDRQDAGQKVMWTSGLIFGKGQGIVGLETEYGTLHIKLFPECAPHSVAYILELLSLRHCAGCQFHRAESRGQSWDIEGNHIKNAPYGPPFGLIQGTLEALGTAFKKIPREVCPSIRRGSVAWIGSGPEFFISLSNHEEWKNSYTVFGSVLPQNMEIVEKIAQLPTKSDVWNNINVTVLKKPVPLRLRRLKKSSLGGVDANVRQE
**********TPRFTSLILFFLALISFAVVYTFLSFIFRPN********************GQCCQGIENLEFWGGAVKWGSDFKFNSSRMCCEACKAMCTGNDGPCLCDTWVFCGNKKSCGSRFGECWLKKQKDVLAPDRQDAGQKVMWTSGLIFGKGQGIVGLETEYGTLHIKLFPECAPHSVAYILELLSLRHCAGCQFHRAESRGQSWDIEGNHIKNAPYGPPFGLIQGTLEALGTAFKKIPREVCPSIRRGSVAWIGSGPEFFISLSNHEEWKNSYTVFGSVLPQNMEIVEKIAQLPTKSDVWNNINVTVLKKPVPLRLRRLKKSSLGGV*******
iiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MVRRQQNDLETPRFTSLILFFLALISFAVVYTFLSFIFRPNGHPLDAKFQSFTVAEEGDQIGQCCQGIENLEFWGGAVKWGSDFKFNSSRMCCEACKAMCTGNDGPCLCDTWVFCGNKKSCGSRFGECWLKKQKDVLAPDRQDAGQKVMWTSGLIFGKGQGIVGLETEYGTLHIKLFPECAPHSVAYILELLSLRHCAGCQFHRAESRGQSWDIEGNHIKNAPYGPPFGLIQGTLEALGTAFKKIPREVCPSIRRGSVAWIGSGPEFFISLSNHEEWKNSYTVFGSVLPQNMEIVEKIAQLPTKSDVWNNINVTVLKKPVPLRLRRLKKSSLGGVDANVRQE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query342 2.2.26 [Sep-21-2011]
Q5ZLV2161 Peptidyl-prolyl cis-trans yes no 0.418 0.888 0.275 1e-07
Q812D3161 Peptidyl-prolyl cis-trans yes no 0.418 0.888 0.268 6e-07
Q9H2H8161 Peptidyl-prolyl cis-trans yes no 0.418 0.888 0.268 9e-07
P0CP86167 Peptidyl-prolyl cis-trans yes no 0.426 0.874 0.291 2e-06
P0CP87167 Peptidyl-prolyl cis-trans N/A no 0.426 0.874 0.291 2e-06
Q9D6L8161 Peptidyl-prolyl cis-trans yes no 0.418 0.888 0.262 3e-06
P0C1I5170 Peptidyl-prolyl cis-trans N/A no 0.438 0.882 0.258 4e-05
Q4IBK5588 Peptidyl-prolyl cis-trans yes no 0.391 0.227 0.264 0.0002
Q09928516 Peptidyl-prolyl cis-trans yes no 0.391 0.259 0.254 0.0002
Q9FJX0595 Peptidyl-prolyl cis-trans no no 0.350 0.201 0.279 0.0005
>sp|Q5ZLV2|PPIL3_CHICK Peptidyl-prolyl cis-trans isomerase-like 3 OS=Gallus gallus GN=PPIL3 PE=2 SV=1 Back     alignment and function desciption
 Score = 57.8 bits (138), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 70/160 (43%), Gaps = 17/160 (10%)

Query: 163 VGLETEYGTLHIKLFPECAPHSVAYILELLSLRHCAGCQFHRAESRGQSWDIEGNHIKNA 222
           V L T+ G + I+LF E  P +    L L +  +  GC FHR        +I+G  ++  
Sbjct: 3   VTLHTDVGDIKIELFCERTPKTCENFLALCASNYYNGCVFHR--------NIKGFMVQT- 53

Query: 223 PYGPPFGLIQGTLEALGTAFKKIPREVCPSIRRGSVAWIGSGP-----EFFISLSNHEEW 277
             G P G  +G     G  F+    E      RG V+   +GP     +FFI+       
Sbjct: 54  --GDPLGTGKGGTSIWGKKFEDEFSEYLKHSVRGVVSMANNGPNTNGSQFFITYGKQPHL 111

Query: 278 KNSYTVFGSVLPQNMEIVEKIAQLPTKSDVWNNINVTVLK 317
              YTVFG V+   +E ++++ +LP     +  +N   +K
Sbjct: 112 DMKYTVFGKVI-DGLETLDELEKLPVNEKTYRPLNDVHIK 150
PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.
Gallus gallus (taxid: 9031)
EC: 5EC: .EC: 2EC: .EC: 1EC: .EC: 8
>sp|Q812D3|PPIL3_RAT Peptidyl-prolyl cis-trans isomerase-like 3 OS=Rattus norvegicus GN=Ppil3 PE=2 SV=1 Back     alignment and function description
>sp|Q9H2H8|PPIL3_HUMAN Peptidyl-prolyl cis-trans isomerase-like 3 OS=Homo sapiens GN=PPIL3 PE=1 SV=1 Back     alignment and function description
>sp|P0CP86|PPIL3_CRYNJ Peptidyl-prolyl cis-trans isomerase-like 3 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=CYP10 PE=3 SV=1 Back     alignment and function description
>sp|P0CP87|PPIL3_CRYNB Peptidyl-prolyl cis-trans isomerase-like 3 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=CYP10 PE=3 SV=1 Back     alignment and function description
>sp|Q9D6L8|PPIL3_MOUSE Peptidyl-prolyl cis-trans isomerase-like 3 OS=Mus musculus GN=Ppil3 PE=2 SV=1 Back     alignment and function description
>sp|P0C1I5|PPIL3_RHIO9 Peptidyl-prolyl cis-trans isomerase-like 3 OS=Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) GN=cyp4 PE=3 SV=1 Back     alignment and function description
>sp|Q4IBK5|PPIL2_GIBZE Peptidyl-prolyl cis-trans isomerase-like 2 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=CYP8 PE=3 SV=1 Back     alignment and function description
>sp|Q09928|PPIL2_SCHPO Peptidyl-prolyl cis-trans isomerase cyp8 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cyp8 PE=2 SV=3 Back     alignment and function description
>sp|Q9FJX0|PPIL2_ARATH Peptidyl-prolyl cis-trans isomerase-like 2 OS=Arabidopsis thaliana GN=PUB49 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query342
224126439335 predicted protein [Populus trichocarpa] 0.947 0.967 0.750 1e-146
224138756338 predicted protein [Populus trichocarpa] 0.982 0.994 0.725 1e-146
359474420345 PREDICTED: uncharacterized protein LOC10 0.991 0.982 0.703 1e-141
359497106345 PREDICTED: uncharacterized protein LOC10 0.956 0.947 0.712 1e-140
255580805353 conserved hypothetical protein [Ricinus 0.944 0.915 0.68 1e-136
449459010343 PREDICTED: uncharacterized protein LOC10 0.953 0.950 0.678 1e-135
255571055339 conserved hypothetical protein [Ricinus 0.953 0.961 0.664 1e-131
240255958343 peptidyl-prolyl cis-trans isomerase [Ara 0.944 0.941 0.651 1e-130
297800404342 predicted protein [Arabidopsis lyrata su 0.950 0.950 0.660 1e-130
356568563326 PREDICTED: uncharacterized protein LOC10 0.947 0.993 0.652 1e-129
>gi|224126439|ref|XP_002329554.1| predicted protein [Populus trichocarpa] gi|222870263|gb|EEF07394.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  524 bits (1350), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 244/325 (75%), Positives = 277/325 (85%), Gaps = 1/325 (0%)

Query: 4   RQQNDLETPRFTSLILFFLALISFAVVYTFLSFIFRPNGHPLDAKFQSFTVAEEGDQIGQ 63
           R+QND E  RF SL    + LIS A+VYT LS +  PN     + F+S  + EE    G 
Sbjct: 3   RRQNDSEPSRFISLSFLLVGLISCALVYTVLSVVLNPNISSKGSNFESLALTEESSD-GG 61

Query: 64  CCQGIENLEFWGGAVKWGSDFKFNSSRMCCEACKAMCTGNDGPCLCDTWVFCGNKKSCGS 123
           CC+GIE LE WG AVKWGSDFKFNSS+ CC+ACKAMCTG DGPCLCDTWVFCGNKK+CGS
Sbjct: 62  CCRGIEKLELWGAAVKWGSDFKFNSSKECCQACKAMCTGIDGPCLCDTWVFCGNKKACGS 121

Query: 124 RFGECWLKKQKDVLAPDRQDAGQKVMWTSGLIFGKGQGIVGLETEYGTLHIKLFPECAPH 183
           +FGECWLKKQKDV APDRQ+AG  V+WTSG++FGKG+GIVGLETE+GTLHIKLFP+CAPH
Sbjct: 122 KFGECWLKKQKDVFAPDRQEAGDPVIWTSGIVFGKGEGIVGLETEFGTLHIKLFPDCAPH 181

Query: 184 SVAYILELLSLRHCAGCQFHRAESRGQSWDIEGNHIKNAPYGPPFGLIQGTLEALGTAFK 243
           SVAYILELL+LRHCAGCQFHRAE RGQ WD EGNHIK AP+GPPF +IQGTLEA GT+FK
Sbjct: 182 SVAYILELLTLRHCAGCQFHRAEGRGQLWDAEGNHIKKAPFGPPFAMIQGTLEAQGTSFK 241

Query: 244 KIPREVCPSIRRGSVAWIGSGPEFFISLSNHEEWKNSYTVFGSVLPQNMEIVEKIAQLPT 303
           KIP E CP IRRGSVAW+GSGPEFFISL+NH+EWK +YTVFGSVLP++MEI EKIAQLPT
Sbjct: 242 KIPTEECPYIRRGSVAWVGSGPEFFISLANHQEWKKAYTVFGSVLPEDMEIAEKIAQLPT 301

Query: 304 KSDVWNNINVTVLKKPVPLRLRRLK 328
           KSDVWNNINV+VL+KP+PL +RRLK
Sbjct: 302 KSDVWNNINVSVLEKPLPLLVRRLK 326

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224138756|ref|XP_002326682.1| predicted protein [Populus trichocarpa] gi|222834004|gb|EEE72481.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359474420|ref|XP_003631460.1| PREDICTED: uncharacterized protein LOC100853434 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359497106|ref|XP_003635426.1| PREDICTED: uncharacterized protein LOC100854739 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255580805|ref|XP_002531223.1| conserved hypothetical protein [Ricinus communis] gi|223529183|gb|EEF31159.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|449459010|ref|XP_004147239.1| PREDICTED: uncharacterized protein LOC101206948 [Cucumis sativus] gi|449515153|ref|XP_004164614.1| PREDICTED: uncharacterized protein LOC101228365 [Cucumis sativus] Back     alignment and taxonomy information
>gi|255571055|ref|XP_002526478.1| conserved hypothetical protein [Ricinus communis] gi|223534153|gb|EEF35869.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|240255958|ref|NP_567522.5| peptidyl-prolyl cis-trans isomerase [Arabidopsis thaliana] gi|15912321|gb|AAL08294.1| AT4g17070/dl4565c [Arabidopsis thaliana] gi|23505941|gb|AAN28830.1| At4g17070/dl4565c [Arabidopsis thaliana] gi|332658445|gb|AEE83845.1| peptidyl-prolyl cis-trans isomerase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297800404|ref|XP_002868086.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297313922|gb|EFH44345.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356568563|ref|XP_003552480.1| PREDICTED: uncharacterized protein LOC100808052 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query342
TAIR|locus:2130474343 AT4G17070 [Arabidopsis thalian 0.903 0.900 0.636 3.4e-116
UNIPROTKB|Q5ZLV2161 PPIL3 "Peptidyl-prolyl cis-tra 0.403 0.857 0.277 2.3e-08
RGD|631415161 Ppil3 "peptidylprolyl isomeras 0.403 0.857 0.270 1e-07
ZFIN|ZDB-GENE-040625-159161 zgc:86715 "zgc:86715" [Danio r 0.403 0.857 0.290 1.4e-07
UNIPROTKB|J9NZK4160 PPIL3 "Peptidyl-prolyl cis-tra 0.403 0.862 0.270 1.7e-07
UNIPROTKB|Q9H2H8161 PPIL3 "Peptidyl-prolyl cis-tra 0.403 0.857 0.270 1.7e-07
UNIPROTKB|F2Z5T7161 PPIL3 "Peptidyl-prolyl cis-tra 0.403 0.857 0.270 1.7e-07
UNIPROTKB|H7BZ14180 PPIL3 "Peptidyl-prolyl cis-tra 0.418 0.794 0.267 3.2e-07
UNIPROTKB|J9P7M4161 J9P7M4 "Peptidyl-prolyl cis-tr 0.406 0.863 0.270 3.7e-07
MGI|MGI:1917475161 Ppil3 "peptidylprolyl isomeras 0.403 0.857 0.264 4.8e-07
TAIR|locus:2130474 AT4G17070 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1145 (408.1 bits), Expect = 3.4e-116, P = 3.4e-116
 Identities = 203/319 (63%), Positives = 245/319 (76%)

Query:     4 RQQNDLETPRXXXXXXXXXXXXXXXVVYTFLSFIFRPNGHP--LDA--KFQS----FTVA 55
             R+ ND E  R               +VY   S + RP+  P  +D+  +F+         
Sbjct:     3 RRLNDGEPGRFTATVLLLIGLISCVIVYAVFSSVLRPSQDPTLVDSAVRFKEEPRDHDAT 62

Query:    56 EEGDQIGQCCQGIENLEFWGGAVKWGSDFKFNSSRMCCEACKAMCTGNDGPCLCDTWVFC 115
             E+G+  G CC+GI+NLE WG AVKWG+DFKFNSS  CC+ACK MC+GNDGPCLCD+WVFC
Sbjct:    63 EDGE--GGCCRGIDNLELWGPAVKWGTDFKFNSSDGCCKACKVMCSGNDGPCLCDSWVFC 120

Query:   116 GNKKSCGSRFGECWLKKQKDVLAPDRQDAGQKVMWTSGLIFGKGQGIVGLETEYGTLHIK 175
             GNK+ CGS+FGECWLKKQKDVL PDRQ  G+KVMWTSGLIFG+GQGIVG ETE+G +H+K
Sbjct:   121 GNKEDCGSKFGECWLKKQKDVLVPDRQGGGEKVMWTSGLIFGQGQGIVGFETEHGVIHVK 180

Query:   176 LFPECAPHSVAYILELLSLRHCAGCQFHRAESRGQSWDIEGNHIKNAPYGPPFGLIQGTL 235
             L PECAPHSV YIL LL+LRHCAGCQFHRAE+RG  WD EGNH+KNAP+GPP+ +IQG L
Sbjct:   181 LHPECAPHSVYYILSLLTLRHCAGCQFHRAENRGSYWDSEGNHVKNAPFGPPYAMIQGIL 240

Query:   236 EALGTAFKKIPREVCPSIRRGSVAWIGSGPEFFISLSNHEEWKNSYTVFGSVLPQNMEIV 295
             +A G  F  IP E CP+I RGSVAW+GSGPEFFISL+NH EWK SYTVFG VLP++M++V
Sbjct:   241 QAEGNIFTPIPTEHCPTISRGSVAWVGSGPEFFISLANHHEWKQSYTVFGLVLPEDMDVV 300

Query:   296 EKIAQLPTKSDVWNNINVT 314
             E IA LPT++DVWN++NV+
Sbjct:   301 ETIAGLPTRADVWNSVNVS 319
GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0006457 "protein folding" evidence=IEA
GO:0006979 "response to oxidative stress" evidence=IMP
UNIPROTKB|Q5ZLV2 PPIL3 "Peptidyl-prolyl cis-trans isomerase-like 3" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
RGD|631415 Ppil3 "peptidylprolyl isomerase (cyclophilin)-like 3" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040625-159 zgc:86715 "zgc:86715" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|J9NZK4 PPIL3 "Peptidyl-prolyl cis-trans isomerase" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q9H2H8 PPIL3 "Peptidyl-prolyl cis-trans isomerase-like 3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F2Z5T7 PPIL3 "Peptidyl-prolyl cis-trans isomerase" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|H7BZ14 PPIL3 "Peptidyl-prolyl cis-trans isomerase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|J9P7M4 J9P7M4 "Peptidyl-prolyl cis-trans isomerase" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:1917475 Ppil3 "peptidylprolyl isomerase (cyclophilin)-like 3" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer5.2.1LOW CONFIDENCE prediction!
4th Layer5.2.1.8LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.01180091
hypothetical protein (335 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query342
pfam00160144 pfam00160, Pro_isomerase, Cyclophilin type peptidy 1e-16
cd00317146 cd00317, cyclophilin, cyclophilin: cyclophilin-typ 8e-12
COG0652158 COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase 3e-11
cd01927148 cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclo 9e-08
cd01928153 cd01928, Cyclophilin_PPIL3_like, Cyclophilin_PPIL3 3e-05
cd01925171 cd01925, cyclophilin_CeCYP16-like, cyclophilin_CeC 6e-05
cd01920155 cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP 1e-04
cd01923159 cd01923, cyclophilin_RING, cyclophilin_RING: cyclo 6e-04
pfam1429548 pfam14295, PAN_4, PAN domain 0.001
>gnl|CDD|215759 pfam00160, Pro_isomerase, Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Back     alignment and domain information 
 Score = 75.4 bits (186), Expect = 1e-16
 Identities = 43/152 (28%), Positives = 64/152 (42%), Gaps = 30/152 (19%)

Query: 165 LETEYGTLHIKLFPECAPHSVAYILELLSLRHCAGCQFHRAESRGQSWDIEGNHIKNAPY 224
           + T  G + I+LF + AP +V   L L       G  FHR              I     
Sbjct: 4   ITTNLGRIVIELFGDEAPKTVENFLSLCKKGFYDGTIFHRV-------------IPG--- 47

Query: 225 GPPFGLIQG--TLEALGTAFKKIPREVCPSIR--RGSVAWIGSGP-----EFFISLSNHE 275
                +IQG           + IP E    ++  RG+++   SGP     +FFI+L +  
Sbjct: 48  ----FMIQGGDPTGPGTGGKRSIPDEFVSKLKHKRGTLSMARSGPNSAGSQFFITLGDAP 103

Query: 276 EWKNSYTVFGSVLPQNMEIVEKIAQLPTKSDV 307
                YTVFG V+ + M++VEKI ++ T  D 
Sbjct: 104 HLDGGYTVFGRVV-EGMDVVEKIEKVETDGDR 134

The peptidyl-prolyl cis-trans isomerases, also known as cyclophilins, share this domain of about 109 amino acids. Cyclophilins have been found in all organisms studied so far and catalyze peptidyl-prolyl isomerisation during which the peptide bond preceding proline (the peptidyl-prolyl bond) is stabilised in the cis conformation. Mammalian cyclophilin A (CypA) is a major cellular target for the immunosuppressive drug cyclosporin A (CsA). Other roles for cyclophilins may include chaperone and cell signalling function. Length = 144
>gnl|CDD|238194 cd00317, cyclophilin, cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases Back     alignment and domain information
>gnl|CDD|223725 COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|238908 cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain Back     alignment and domain information
>gnl|CDD|238909 cd01928, Cyclophilin_PPIL3_like, Cyclophilin_PPIL3_like Back     alignment and domain information
>gnl|CDD|238906 cd01925, cyclophilin_CeCYP16-like, cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16 Back     alignment and domain information
>gnl|CDD|238901 cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E Back     alignment and domain information
>gnl|CDD|238904 cd01923, cyclophilin_RING, cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain Back     alignment and domain information
>gnl|CDD|222657 pfam14295, PAN_4, PAN domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 342
COG0652158 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase 100.0
cd01928153 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Pro 100.0
cd01923159 cyclophilin_RING cyclophilin_RING: cyclophilin-typ 100.0
cd01927148 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-typ 100.0
cd01922146 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: c 100.0
KOG0881164 consensus Cyclophilin type peptidyl-prolyl cis-tra 100.0
cd01921166 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type 100.0
cd01925171 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: 100.0
PRK10903190 peptidyl-prolyl cis-trans isomerase A (rotamase A) 99.98
KOG0884161 consensus Similar to cyclophilin-type peptidyl-pro 99.97
cd01920155 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyc 99.97
PRK10791164 peptidyl-prolyl cis-trans isomerase B (rotamase B) 99.97
KOG0883518 consensus Cyclophilin type, U box-containing pepti 99.97
KOG0546 372 consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos 99.97
cd00317146 cyclophilin cyclophilin: cyclophilin-type peptidyl 99.97
PLN03149186 peptidyl-prolyl isomerase H (cyclophilin H); Provi 99.97
KOG0882558 consensus Cyclophilin-related peptidyl-prolyl cis- 99.97
cd01926164 cyclophilin_ABH_like cyclophilin_ABH_like: Cycloph 99.97
KOG0880217 consensus Peptidyl-prolyl cis-trans isomerase [Pos 99.97
PTZ00221249 cyclophilin; Provisional 99.96
KOG0885 439 consensus Peptidyl-prolyl cis-trans isomerase [Pos 99.96
PF00160155 Pro_isomerase: Cyclophilin type peptidyl-prolyl ci 99.96
PTZ00060183 cyclophilin; Provisional 99.96
KOG0415 479 consensus Predicted peptidyl prolyl cis-trans isom 99.95
cd01924176 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyc 99.95
KOG0879177 consensus U-snRNP-associated cyclophilin type pept 99.95
KOG0111298 consensus Cyclophilin-type peptidyl-prolyl cis-tra 99.91
KOG0865167 consensus Cyclophilin type peptidyl-prolyl cis-tra 99.67
PF1429551 PAN_4: PAN domain; PDB: 2YIL_E 2YIP_C 2YIO_A. 98.17
TIGR03268 503 methan_mark_3 putative methanogenesis marker prote 96.68
PRK00969 508 hypothetical protein; Provisional 96.64
cd0110073 APPLE_Factor_XI_like Subfamily of PAN/APPLE-like d 95.07
KOG0882 558 consensus Cyclophilin-related peptidyl-prolyl cis- 94.95
COG4070 512 Predicted peptidyl-prolyl cis-trans isomerase (rot 94.49
TIGR03268503 methan_mark_3 putative methanogenesis marker prote 94.36
COG4070512 Predicted peptidyl-prolyl cis-trans isomerase (rot 93.81
smart0022379 APPLE APPLE domain. Four-fold repeat in plasma kal 91.63
PF12903147 DUF3830: Protein of unknown function (DUF3830); In 90.32
PRK00969 508 hypothetical protein; Provisional 88.51
PF04126120 Cyclophil_like: Cyclophilin-like; InterPro: IPR007 87.81
>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=3.8e-35  Score=258.72  Aligned_cols=143  Identities=31%  Similarity=0.457  Sum_probs=118.8

Q ss_pred             EEEEEeceeEEEEECCCCChHHHHHHHHHhhCCCcCCceeeEeeeC--CcccCCCCCccCCCCCCCCccccccccccCCC
Q 019343          163 VGLETEYGTLHIKLFPECAPHSVAYILELLSLRHCAGCQFHRAESR--GQSWDIEGNHIKNAPYGPPFGLIQGTLEALGT  240 (342)
Q Consensus       163 V~l~T~~G~I~IeL~~d~AP~tv~nFl~L~~~g~Ydg~~F~Rv~~~--~q~GD~~g~~i~~~q~G~p~~~iqGg~~~~g~  240 (342)
                      +.++|+.|+|+|+||++.||+||+||++||+.+||+|+.||||+++  +|+||+.+.            .++||.   +.
T Consensus         2 v~~~t~~G~I~ieL~~~~aP~Tv~NF~~l~~~g~Ydg~~FHRVi~~FmiQgGd~~~~------------~g~gg~---~~   66 (158)
T COG0652           2 VILETNKGDITIELYPDKAPKTVANFLQLVKEGFYDGTIFHRVIPGFMIQGGDPTGG------------DGTGGP---GP   66 (158)
T ss_pred             ceeeccCCCEEEEECCCcCcHHHHHHHHHHHcCCCCCceEEEeecCceeecCCCCCC------------CCCCCC---CC
Confidence            6899999999999999999999999999999999999999999998  888888864            123332   23


Q ss_pred             ccCCCCCCCC--CCC--CCcEEEEeCCC------CcEEEEcCCCCCCCCCceEEEEEEcccHHHHHHHhcCCCCCCCcCc
Q 019343          241 AFKKIPREVC--PSI--RRGSVAWIGSG------PEFFISLSNHEEWKNSYTVFGSVLPQNMEIVEKIAQLPTKSDVWNN  310 (342)
Q Consensus       241 ~~~~ip~E~~--~~~--~rG~Vsma~sG------sqFFItL~d~p~Ldg~~TVFG~Vv~eGmdVldkI~~~~td~~~~~~  310 (342)
                         .+++|..  .++  .+|+|||||+|      |||||++.++|+||++|+|||+|+ +|||+|++|++.++.....  
T Consensus        67 ---~f~~E~~~~~~~~~~~G~lsMA~~g~P~t~~SQFFI~~~~~~~Ld~~ytVFG~Vv-~GmdvvdkI~~~~~~~~~~--  140 (158)
T COG0652          67 ---PFKDENFALNGDRHKRGTLSMARAGDPNSNGSQFFITVVDNPFLDGKYTVFGQVV-EGMDVVDKIKNGDTDDSGY--  140 (158)
T ss_pred             ---CCcccccccccccCCcceEeEcccCCcCCccCeEEEEecCCcccCCCCcEEEEEe-hhHHHHHHHHcCCccCCCc--
Confidence               3455643  344  49999999965      799999999999999999999999 9999999999999887653  


Q ss_pred             cccccccCCeEEEEEec
Q 019343          311 INVTVLKKPVPLRLRRL  327 (342)
Q Consensus       311 i~v~v~~~PV~i~~~r~  327 (342)
                       ...++..|+.|...++
T Consensus       141 -~~~~~~~~~~i~~~~~  156 (158)
T COG0652         141 -VQDVPADPVKILSVKI  156 (158)
T ss_pred             -ccCCCCCCeEEeeeee
Confidence             2235678888877554

>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like Back     alignment and domain information
>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain Back     alignment and domain information
>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain Back     alignment and domain information
>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2 Back     alignment and domain information
>KOG0881 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM) Back     alignment and domain information
>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16 Back     alignment and domain information
>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional Back     alignment and domain information
>KOG0884 consensus Similar to cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E Back     alignment and domain information
>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional Back     alignment and domain information
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases Back     alignment and domain information
>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional Back     alignment and domain information
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain Back     alignment and domain information
>KOG0880 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PTZ00221 cyclophilin; Provisional Back     alignment and domain information
>KOG0885 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms Back     alignment and domain information
>PTZ00060 cyclophilin; Provisional Back     alignment and domain information
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40 Back     alignment and domain information
>KOG0879 consensus U-snRNP-associated cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0865 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF14295 PAN_4: PAN domain; PDB: 2YIL_E 2YIP_C 2YIO_A Back     alignment and domain information
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3 Back     alignment and domain information
>PRK00969 hypothetical protein; Provisional Back     alignment and domain information
>cd01100 APPLE_Factor_XI_like Subfamily of PAN/APPLE-like domains; present in plasma prekallikrein/coagulation factor XI, microneme antigen proteins, and a few prokaryotic proteins Back     alignment and domain information
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3 Back     alignment and domain information
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>smart00223 APPLE APPLE domain Back     alignment and domain information
>PF12903 DUF3830: Protein of unknown function (DUF3830); InterPro: IPR024532 This is a family of bacterial and archaeal proteins Back     alignment and domain information
>PRK00969 hypothetical protein; Provisional Back     alignment and domain information
>PF04126 Cyclophil_like: Cyclophilin-like; InterPro: IPR007256 Proteins of this family have no known function Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query342
2oju_A167 X-Ray Structure Of Complex Of Human Cyclophilin J W 9e-08
1xyh_A161 Crystal Structure Of Recombinant Human Cyclophilin 1e-07
>pdb|2OJU|A Chain A, X-Ray Structure Of Complex Of Human Cyclophilin J With Cyclosporin A Length = 167 Back     alignment and structure 
Iteration: 1

 Score = 54.3 bits (129), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 68/155 (43%), Gaps = 17/155 (10%)
Query: 163 VGLETEYGTLHIKLFPECAPHSVAYILELLSLRHCAGCQFHRAESRGQSWDIEGNHIKNA 222
           V L T+ G + I++F E  P +    L L +  +  GC FHR        +I+G  ++  
Sbjct: 9   VTLHTDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHR--------NIKGFMVQT- 59
Query: 223 PYGPPFGLIQGTLEALGTAFKKIPREVCPSIRRGSVAWIGSGP-----EFFISLSNHEEW 277
             G P G  +G     G  F+    E      RG V+   +GP     +FFI+       
Sbjct: 60  --GDPTGTGRGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHL 117
Query: 278 KNSYTVFGSVLPQNMEIVEKIAQLPTKSDVWNNIN 312
              YTVFG V+   +E ++++ +LP     +  +N
Sbjct: 118 DMKYTVFGKVI-DGLETLDELEKLPVNEKTYRPLN 151
>pdb|1XYH|A Chain A, Crystal Structure Of Recombinant Human Cyclophilin J Length = 161 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query342
1v9t_A166 Cyclophilin B; beta barrel, isomerase-isomerase in 4e-12
2hq6_A185 Serologically defined colon cancer antigen 10; pro 3e-11
1zkc_A197 Peptidyl-prolyl CIS-trans isomerase like 2; CIS-tr 4e-11
2a2n_A176 Peptidylprolyl isomerase domain and WD repeat CON; 2e-10
2ok3_A161 Peptidyl-prolyl CIS-trans isomerase-like 3; beta-b 3e-10
2b71_A196 Cyclophilin-like protein; structural genomics, str 3e-10
1lop_A164 Cyclophilin A; rotamase, isomerase-isomerase inhib 4e-10
2fu0_A160 Cyclophilin, putative; PFE0505W, cyclosporin-bindi 4e-10
3bo7_A201 Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; 5e-10
2x7k_A166 Peptidyl-prolyl CIS-trans isomerase-like 1; isomer 7e-10
2k7n_A203 Peptidyl-prolyl CIS-trans isomerase-like 1; beta b 1e-09
3s6m_A167 Peptidyl-prolyl CIS-trans isomerase; seattle struc 1e-09
1w74_A191 Peptidyl-prolyl CIS-trans isomerase A; cyclophilin 2e-09
3bkp_A232 Cyclophilin; malaria, isomerase, structural GENO s 3e-09
3rfy_A369 Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; 6e-09
2poe_A185 Cyclophilin-like protein, putative; cryptosporidiu 3e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex; HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB: 1j2a_A* 1vai_A* 1clh_A Length = 166 Back     alignment and structure
 Score = 62.6 bits (153), Expect = 4e-12
 Identities = 39/162 (24%), Positives = 67/162 (41%), Gaps = 40/162 (24%)

Query: 162 IVGLETEYGTLHIKLFPECAPHSVAYILELLSLRHCAGCQFHRAESRGQSWDIEGNHIKN 221
            V L T  G + ++L  + AP SV   ++ ++        FHR         I G     
Sbjct: 6   HVLLTTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRV--------IPG----- 52

Query: 222 APYGPPFGLIQG-----TLEALGTAFKKIPREVCPSIR--RGSVAW-IGSGP-----EFF 268
                 F +IQG      ++        I  E    +R  RG++A    +       +FF
Sbjct: 53  ------F-MIQGGGFTEQMQQKKP-NPPIKNEADNGLRNTRGTIAMARTADKDSATSQFF 104

Query: 269 ISLS-----NHEEWKNSYTVFGSVLPQNMEIVEKIAQLPTKS 305
           I+++     +H +    Y VFG V+ + M++ +KI+Q+PT  
Sbjct: 105 INVADNAFLDHGQRDFGYAVFGKVV-KGMDVADKISQVPTHD 145
>2hq6_A Serologically defined colon cancer antigen 10; protein folding, peptidyl-prolyl CIS-trans isomerase, struct genomics; 1.75A {Homo sapiens} Length = 185 Back     alignment and structure
>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans isomerization, peptidylprolyl isomerase, protein- folding, structural genomics consortium; 1.65A {Homo sapiens} SCOP: b.62.1.1 Length = 197 Back     alignment and structure
>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans isomerization, protein-folding, peptidylprolyl ISO structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1 Length = 176 Back     alignment and structure
>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix, disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1xyh_A 2oju_A* Length = 161 Back     alignment and structure
>2b71_A Cyclophilin-like protein; structural genomics, structural genomics consortium, SGC, isomerase; 2.50A {Plasmodium yoelii} SCOP: b.62.1.1 Length = 196 Back     alignment and structure
>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex; HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB: 2nul_A 2rs4_A Length = 164 Back     alignment and structure
>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain, structura genomics, structural genomics consortium, SGC, unknown FUNC; 1.80A {Plasmodium falciparum} SCOP: b.62.1.1 Length = 160 Back     alignment and structure
>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, structural G structural genomics consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii} Length = 201 Back     alignment and structure
>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1; isomerase-immunosuppressant complex, immunosuppressant; HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB: 1xwn_A Length = 166 Back     alignment and structure
>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel, disorder-order transition, HOOK-like, mRNA processing, mRNA splicing, rotamase; NMR {Homo sapiens} Length = 203 Back     alignment and structure
>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics center for infectious disease; 1.65A {Burkholderia pseudomallei} PDB: 3t1u_A* Length = 167 Back     alignment and structure
>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009, rotamase, structural proteomics in europe, spine; 2.6A {Mycobacterium tuberculosis} SCOP: b.62.1.1 Length = 191 Back     alignment and structure
>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 232 Back     alignment and structure
>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana} Length = 369 Back     alignment and structure
>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum cyclophilin isomerase, structural genomics; 2.01A {Cryptosporidium parvum iowa II} PDB: 2qer_A Length = 185 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query342
2ok3_A161 Peptidyl-prolyl CIS-trans isomerase-like 3; beta-b 100.0
2fu0_A160 Cyclophilin, putative; PFE0505W, cyclosporin-bindi 100.0
2x7k_A166 Peptidyl-prolyl CIS-trans isomerase-like 1; isomer 100.0
2a2n_A176 Peptidylprolyl isomerase domain and WD repeat CON; 100.0
2poe_A185 Cyclophilin-like protein, putative; cryptosporidiu 100.0
2b71_A196 Cyclophilin-like protein; structural genomics, str 100.0
1zkc_A197 Peptidyl-prolyl CIS-trans isomerase like 2; CIS-tr 100.0
3bo7_A201 Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; 100.0
2k7n_A203 Peptidyl-prolyl CIS-trans isomerase-like 1; beta b 100.0
1w74_A191 Peptidyl-prolyl CIS-trans isomerase A; cyclophilin 100.0
1v9t_A166 Cyclophilin B; beta barrel, isomerase-isomerase in 100.0
3s6m_A167 Peptidyl-prolyl CIS-trans isomerase; seattle struc 100.0
2hq6_A185 Serologically defined colon cancer antigen 10; pro 100.0
1mzw_A177 Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyc 100.0
1lop_A164 Cyclophilin A; rotamase, isomerase-isomerase inhib 100.0
2cmt_A172 Peptidyl-prolyl CIS-trans isomerase E; rotamase ac 100.0
2r99_A173 Peptidyl-prolyl CIS-trans isomerase E; CIS-trans i 100.0
2wfi_A179 Peptidyl-prolyl CIS-trans isomerase G; phosphoprot 100.0
1a58_A177 Cyclophilin; isomerase, ppiase; 1.95A {Brugia mala 100.0
3ich_A188 Peptidyl-prolyl CIS-trans isomerase B; beta sandwi 100.0
1qng_A170 Peptidyl-prolyl CIS-trans isomerase; isomerase-imm 100.0
2z6w_A165 Peptidyl-prolyl CIS-trans isomerase; isomerase-imm 100.0
3bkp_A232 Cyclophilin; malaria, isomerase, structural GENO s 100.0
2igv_A173 Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1 100.0
2haq_A172 Cyclophilin; rotamase, proline, isomerase, CIS-tra 100.0
3pmp_A164 Cyclophilin A; peptidyl prolyl isomerase, isomeras 100.0
2he9_A192 NK-tumor recognition protein; cyclosporin, isomera 100.0
4fru_A185 Cyclophilin B, peptidyl-prolyl CIS-trans isomerase 100.0
2poy_A186 Peptidyl-prolyl CIS-trans isomerase; isomerase-imm 100.0
3rdd_A184 Peptidyl-prolyl CIS-trans isomerase A; beta barrel 100.0
1z81_A229 Cyclophilin; structural genomics, structural genom 100.0
3k2c_A193 Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, 100.0
2c3b_A172 Ppiase, cyclophilin; isomerase, 3D domain swapping 99.98
2ose_A234 Probable peptidyl-prolyl CIS-trans isomerase; cycl 99.97
1ihg_A 370 Cyclophilin 40; ppiase immunophilin tetratricopept 99.97
3rfy_A369 Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; 99.95
2nnz_A153 Hypothetical protein; beta-barrel, structural geno 93.84
2yil_A138 Microneme antigen L2; sugar binding protein, apple 91.76
4a5v_A161 MIC4, micronemal protein 4; adhesion; NMR {Toxopla 91.31
2yil_A138 Microneme antigen L2; sugar binding protein, apple 91.09
2f83_A 625 Coagulation factor XI; protease, apple domain, hyd 90.1
2f83_A 625 Coagulation factor XI; protease, apple domain, hyd 90.09
4a5v_A161 MIC4, micronemal protein 4; adhesion; NMR {Toxopla 89.91
3kop_A188 Uncharacterized protein; protein with A cyclophili 89.16
1zx8_A136 Hypothetical protein TM1367; structural genomics, 83.43
>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix, disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1xyh_A 2oju_A* Back     alignment and structure
Probab=100.00  E-value=5.4e-37  Score=270.44  Aligned_cols=148  Identities=26%  Similarity=0.412  Sum_probs=127.3

Q ss_pred             cEEEEEEeceeEEEEECCCCChHHHHHHHHHhhCCCcCCceeeEeeeC--CcccCCCCCccCCCCCCCCccccccccccC
Q 019343          161 GIVGLETEYGTLHIKLFPECAPHSVAYILELLSLRHCAGCQFHRAESR--GQSWDIEGNHIKNAPYGPPFGLIQGTLEAL  238 (342)
Q Consensus       161 ~~V~l~T~~G~I~IeL~~d~AP~tv~nFl~L~~~g~Ydg~~F~Rv~~~--~q~GD~~g~~i~~~q~G~p~~~iqGg~~~~  238 (342)
                      +.|+|+|+.|+|+|+||++.||++|+||++||+.+||+|+.||||+++  +|+||+.+.             +.|+.+.+
T Consensus         1 m~v~~~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~fhRvi~~f~iQgGd~~~~-------------g~gg~si~   67 (161)
T 2ok3_A            1 MSVTLHTDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHRNIKGFMVQTGDPTGT-------------GRGGNSIW   67 (161)
T ss_dssp             CEEEEEETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTCBCCEEETTTEEEECCTTSS-------------SSCCCCTT
T ss_pred             CEEEEEeCCccEEEEEcCCCCcHHHHHHHHHhhhcccCCCEEEEEECCCEEecCCCCCC-------------CCCCCccc
Confidence            479999999999999999999999999999999999999999999988  888877753             34566777


Q ss_pred             CCccCCCCCCCCCCCCCcEEEEeCCC-----CcEEEEcCCCCCCCCCceEEEEEEcccHHHHHHHhcCCCCCC-CcCccc
Q 019343          239 GTAFKKIPREVCPSIRRGSVAWIGSG-----PEFFISLSNHEEWKNSYTVFGSVLPQNMEIVEKIAQLPTKSD-VWNNIN  312 (342)
Q Consensus       239 g~~~~~ip~E~~~~~~rG~Vsma~sG-----sqFFItL~d~p~Ldg~~TVFG~Vv~eGmdVldkI~~~~td~~-~~~~i~  312 (342)
                      +..++++.....+|+++|+||||++|     |||||++++.++||++|+|||+|+ +||+||++|++++++++ +     
T Consensus        68 g~~~~dE~~~~l~h~~~G~lsma~~gp~s~~SQFfI~~~~~~~Ldg~~tvFG~Vv-~G~dvv~~I~~~~~~~~~~-----  141 (161)
T 2ok3_A           68 GKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVI-DGLETLDELEKLPVNEKTY-----  141 (161)
T ss_dssp             SSCBCCCCCTTCCSCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEE-ECHHHHHHHHTCCBCTTTC-----
T ss_pred             CCccccccCcCcCcCCCeEEEEecCCCCCcceEEEEEcCCCCccCCCEeEEEEEe-CCHHHHHHHHhCCccCCCC-----
Confidence            77776533233467799999999864     799999999999999999999999 99999999999999876 4     


Q ss_pred             cccccCCeEEEEEeccC
Q 019343          313 VTVLKKPVPLRLRRLKK  329 (342)
Q Consensus       313 v~v~~~PV~i~~~r~~~  329 (342)
                        .|.+||.|..+.+..
T Consensus       142 --~P~~~v~I~~~~i~~  156 (161)
T 2ok3_A          142 --RPLNDVHIKDITIHA  156 (161)
T ss_dssp             --CBSSCCBEEEEEEEC
T ss_pred             --CcCCCeEEEEEEEec
Confidence              677888887766543
>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain, structura genomics, structural genomics consortium, SGC, unknown FUNC; 1.80A {Plasmodium falciparum} SCOP: b.62.1.1 Back     alignment and structure
>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1; isomerase-immunosuppressant complex, immunosuppressant; HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB: 1xwn_A Back     alignment and structure
>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans isomerization, protein-folding, peptidylprolyl ISO structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1 Back     alignment and structure
>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum cyclophilin isomerase, structural genomics; 2.01A {Cryptosporidium parvum iowa II} PDB: 2qer_A Back     alignment and structure
>2b71_A Cyclophilin-like protein; structural genomics, structural genomics consortium, SGC, isomerase; 2.50A {Plasmodium yoelii} SCOP: b.62.1.1 Back     alignment and structure
>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans isomerization, peptidylprolyl isomerase, protein- folding, structural genomics consortium; 1.65A {Homo sapiens} SCOP: b.62.1.1 Back     alignment and structure
>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, structural G structural genomics consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii} Back     alignment and structure
>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel, disorder-order transition, HOOK-like, mRNA processing, mRNA splicing, rotamase; NMR {Homo sapiens} Back     alignment and structure
>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009, rotamase, structural proteomics in europe, spine; 2.6A {Mycobacterium tuberculosis} SCOP: b.62.1.1 Back     alignment and structure
>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex; HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB: 1j2a_A* 1vai_A* 1clh_A Back     alignment and structure
>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics center for infectious disease; 1.65A {Burkholderia pseudomallei} SCOP: b.62.1.1 PDB: 3t1u_A* Back     alignment and structure
>2hq6_A Serologically defined colon cancer antigen 10; protein folding, peptidyl-prolyl CIS-trans isomerase, struct genomics; 1.75A {Homo sapiens} Back     alignment and structure
>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1qoi_A Back     alignment and structure
>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex; HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB: 2nul_A 2rs4_A Back     alignment and structure
>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase, RNA-binding, cyclosporin, cyclophilin, beta-barrel; 1.50A {Schistosoma mansoni} PDB: 2ck1_A Back     alignment and structure
>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization, structural genomics consortium, SGC, alternative splicing, mRNA processing; 1.61A {Homo sapiens} SCOP: b.62.1.1 PDB: 3uch_A 1zmf_A Back     alignment and structure
>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA splicing, alternative splicing, nucleus, rotamase, cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A* 2gw2_A Back     alignment and structure
>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP: b.62.1.1 PDB: 1a33_A 1c5f_A* Back     alignment and structure
>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin, endoplasmic reticulum, glycoprot isomerase, rotamase; 1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A* Back     alignment and structure
>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, cyclophilin-cyclosporin complex, immunosuppressant, cyclophilin; HET: BMT; 2.1A {Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A* Back     alignment and structure
>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin D; HET: BMT MLE CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A* 3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A* 3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A* 2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ... Back     alignment and structure
>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Back     alignment and structure
>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A {Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A 1e8k_A 1dyw_A 2igw_A 2hqj_A Back     alignment and structure
>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa, KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A* 3bt8_A Back     alignment and structure
>3pmp_A Cyclophilin A; peptidyl prolyl isomerase, isomerase-immunosuppressant compl; HET: BMT; 1.47A {Moniliophthora perniciosa} SCOP: b.62.1.1 PDB: 3o7t_A Back     alignment and structure
>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane, repeat, rotamase, peptidylprolyl isomerase, structural genomics; 2.00A {Homo sapiens} Back     alignment and structure
>4fru_A Cyclophilin B, peptidyl-prolyl CIS-trans isomerase; cyclophilin-type ppiase, peptidyl-prolyl CIS-trans isomerase chaperone, foldase; HET: ME2 PEG; 1.10A {Equus caballus} PDB: 4frv_A* 3ich_A 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A* Back     alignment and structure
>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, isomerase, S genomics, structural genomics consortium; HET: BMT; 1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A* Back     alignment and structure
>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic, inhibito isomerase-isomerase inhibitor complex; HET: EA4; 2.14A {Homo sapiens} Back     alignment and structure
>1z81_A Cyclophilin; structural genomics, structural genomics consortium, SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP: b.62.1.1 Back     alignment and structure
>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW, decode, cytoplasm, rotamase, structural genomics; HET: PG5; 1.95A {Encephalitozoon cuniculi} Back     alignment and structure
>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus} SCOP: b.62.1.1 Back     alignment and structure
>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A {Mimivirus} Back     alignment and structure
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Back     alignment and structure
>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana} Back     alignment and structure
>2nnz_A Hypothetical protein; beta-barrel, structural genomics, ontario centre for structu proteomics, OCSP, unknown function; NMR {Archaeoglobus fulgidus} Back     alignment and structure
>2yil_A Microneme antigen L2; sugar binding protein, apple-domain tandem repeat, PAN_AP, P galactose-binding lectin, cellular adhesion; 1.95A {Sarcocystis muris} PDB: 2yio_A* 2yip_A* Back     alignment and structure
>4a5v_A MIC4, micronemal protein 4; adhesion; NMR {Toxoplasma gondii} Back     alignment and structure
>2yil_A Microneme antigen L2; sugar binding protein, apple-domain tandem repeat, PAN_AP, P galactose-binding lectin, cellular adhesion; 1.95A {Sarcocystis muris} PDB: 2yio_A* 2yip_A* Back     alignment and structure
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG; 2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A Back     alignment and structure
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG; 2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A Back     alignment and structure
>4a5v_A MIC4, micronemal protein 4; adhesion; NMR {Toxoplasma gondii} Back     alignment and structure
>3kop_A Uncharacterized protein; protein with A cyclophilin-like fold, structural genomics, J center for structural genomics, JCSG; 1.90A {Arthrobacter SP} Back     alignment and structure
>1zx8_A Hypothetical protein TM1367; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: 1PE; 1.90A {Thermotoga maritima} SCOP: b.62.1.3 PDB: 2ka0_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 342
d1xwna1166 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isome 7e-15
d2ok3a1159 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B 2e-13
d1w74a_171 b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase 4e-13
d2b71a1169 b.62.1.1 (A:23-191) Cyclophilin-like protein PY006 1e-12
d1zkca1178 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans iso 3e-12
d1v9ta_166 b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase 7e-10
d2c3ba1171 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Asper 2e-09
d2fu0a1155 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w { 2e-09
d1lopa_164 b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase 8e-09
d1qnga_170 b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium 1e-08
d2igva1172 b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caeno 1e-07
d2a2na1164 b.62.1.1 (A:483-646) Peptidylprolyl isomerase doma 3e-07
d1z81a1186 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plas 4e-07
d2cfea1162 b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s 5e-07
d2z6wa1164 b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl c 1e-06
d1qoia_173 b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Hom 3e-06
d2rmca_182 b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus 1e-05
d1h0pa_182 b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabd 2e-05
d1xo7a_166 b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosom 2e-05
d2r99a1161 b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl 1e-04
d1a33a_174 b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode ( 1e-04
d1ihga2195 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain 6e-04
>d1xwna1 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1 {Human (Homo sapiens) [TaxId: 9606]} Length = 166 Back     information, alignment and structure

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.4 bits (169), Expect = 7e-15
 Identities = 37/160 (23%), Positives = 64/160 (40%), Gaps = 17/160 (10%)

Query: 163 VGLETEYGTLHIKLFPECAPHSVAYILELLSLRHCAGCQFHRAESRGQSWDIEGNHIKNA 222
           V LET  G + ++L+ + AP +     EL    +  G +FHR                  
Sbjct: 14  VYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQG--------- 64

Query: 223 PYGPPFGLIQGTLEALGTAFKKIPREVCPSIRRGSVAWIGSGPE-----FFISLSNHEEW 277
             G P G  +G     G  F+            G +A   +GP+     FF++L+  +  
Sbjct: 65  --GDPTGTGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWL 122

Query: 278 KNSYTVFGSVLPQNMEIVEKIAQLPTKSDVWNNINVTVLK 317
              +T+FG V  Q + +V ++  + T S      +V ++K
Sbjct: 123 DGKHTIFGRVC-QGIGMVNRVGMVETNSQDRPVDDVKIIK 161
>d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human (Homo sapiens) [TaxId: 9606]} Length = 159 Back     information, alignment and structure
>d1w74a_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 171 Back     information, alignment and structure
>d2b71a1 b.62.1.1 (A:23-191) Cyclophilin-like protein PY00693 {Plasmodium yoelii [TaxId: 5861]} Length = 169 Back     information, alignment and structure
>d1zkca1 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain {Human (Homo sapiens) [TaxId: 9606]} Length = 178 Back     information, alignment and structure
>d1v9ta_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]} Length = 166 Back     information, alignment and structure
>d2c3ba1 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Aspergillus fumigatus [TaxId: 5085]} Length = 171 Back     information, alignment and structure
>d2fu0a1 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {Plasmodium falciparum [TaxId: 5833]} Length = 155 Back     information, alignment and structure
>d1lopa_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]} Length = 164 Back     information, alignment and structure
>d1qnga_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium falciparum [TaxId: 5833]} Length = 170 Back     information, alignment and structure
>d2igva1 b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 3 [TaxId: 6239]} Length = 172 Back     information, alignment and structure
>d2a2na1 b.62.1.1 (A:483-646) Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 164 Back     information, alignment and structure
>d1z81a1 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId: 5861]} Length = 186 Back     information, alignment and structure
>d2cfea1 b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s 6 {Malassezia sympodialis [TaxId: 76777]} Length = 162 Back     information, alignment and structure
>d2z6wa1 b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]} Length = 164 Back     information, alignment and structure
>d1qoia_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]} Length = 173 Back     information, alignment and structure
>d2rmca_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus musculus), variant C [TaxId: 10090]} Length = 182 Back     information, alignment and structure
>d1h0pa_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 5 [TaxId: 6239]} Length = 182 Back     information, alignment and structure
>d1xo7a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId: 5693]} Length = 166 Back     information, alignment and structure
>d2r99a1 b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]} Length = 161 Back     information, alignment and structure
>d1a33a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (Brugia malayi) [TaxId: 6279]} Length = 174 Back     information, alignment and structure
>d1ihga2 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain {Cow (Bos taurus) [TaxId: 9913]} Length = 195 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query342
d2ok3a1159 Cyclophilin-like protein PPIL3B {Human (Homo sapie 100.0
d2fu0a1155 Putative cyclophilin PFE0505w {Plasmodium falcipar 100.0
d1xwna1166 Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1 100.0
d2b71a1169 Cyclophilin-like protein PY00693 {Plasmodium yoeli 100.0
d1w74a_171 Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycob 100.0
d2a2na1164 Peptidylprolyl isomerase domain and WD repeat-cont 100.0
d1zkca1178 Peptidyl-prolyl cis-trans isomerase-like 2, Cyclop 100.0
d1v9ta_166 Peptidyl-prolyl cis-trans isomerase A, PpiA {Esche 99.98
d1lopa_164 Peptidyl-prolyl cis-trans isomerase A, PpiA {Esche 99.97
d2z6wa1164 Mitochondrial peptidyl-prolyl cis-trans isomerase, 99.97
d1qoia_173 Cyclophilin (eukaryotic) {Human (Homo sapiens), U4 99.97
d2r99a1161 Mitochondrial peptidyl-prolyl cis-trans isomerase, 99.97
d2rmca_182 Cyclophilin (eukaryotic) {Mouse (Mus musculus), va 99.97
d1xo7a_166 Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId 99.96
d1a33a_174 Cyclophilin (eukaryotic) {Nematode (Brugia malayi) 99.96
d1z81a1186 Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId 99.96
d2igva1172 Cyclophilin (eukaryotic) {Caenorhabditis elegans, 99.96
d1h0pa_182 Cyclophilin (eukaryotic) {Caenorhabditis elegans, 99.96
d1qnga_170 Cyclophilin (eukaryotic) {Plasmodium falciparum [T 99.96
d2cfea1162 Cyclophilin-like allergen Mal s 6 {Malassezia symp 99.96
d1ihga2195 Cyclophilin 40 isomerase domain {Cow (Bos taurus) 99.96
d2c3ba1171 Cyclophilin (eukaryotic) {Aspergillus fumigatus [T 99.95
d1zx8a1124 Hypothetical protein TM1367 {Thermotoga maritima [ 87.28
>d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PPIL3B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.9e-35  Score=252.77  Aligned_cols=148  Identities=26%  Similarity=0.431  Sum_probs=124.8

Q ss_pred             cEEEEEEeceeEEEEECCCCChHHHHHHHHHhhCCCcCCceeeEeeeC--CcccCCCCCccCCCCCCCCccccccccccC
Q 019343          161 GIVGLETEYGTLHIKLFPECAPHSVAYILELLSLRHCAGCQFHRAESR--GQSWDIEGNHIKNAPYGPPFGLIQGTLEAL  238 (342)
Q Consensus       161 ~~V~l~T~~G~I~IeL~~d~AP~tv~nFl~L~~~g~Ydg~~F~Rv~~~--~q~GD~~g~~i~~~q~G~p~~~iqGg~~~~  238 (342)
                      |+|+|+|+.|+|+|+||++.||++|+||++||+.+||+|+.|||++++  +|+||+.+..             .++...+
T Consensus         1 msV~~~T~~G~i~ieL~~~~aP~tv~nF~~L~~~g~Y~~~~f~rv~~~~~iq~Gd~~~~~-------------~~~~~~~   67 (159)
T d2ok3a1           1 MSVTLHTDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHRNIKGFMVQTGDPTGTG-------------RGGNSIW   67 (159)
T ss_dssp             CEEEEEETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTCBCCEEETTTEEEECCTTSSS-------------SCCCCTT
T ss_pred             CEEEEEeCCeEEEEEEcCCCChHHHHHHHHHHhhhcccceeEecccCCeEEEeCCccccC-------------CCCcccC
Confidence            579999999999999999999999999999999999999999999988  8877766431             2233345


Q ss_pred             CCccCCCCCCCCCCCCCcEEEEeCCC-----CcEEEEcCCCCCCCCCceEEEEEEcccHHHHHHHhcCCCCCCCcCcccc
Q 019343          239 GTAFKKIPREVCPSIRRGSVAWIGSG-----PEFFISLSNHEEWKNSYTVFGSVLPQNMEIVEKIAQLPTKSDVWNNINV  313 (342)
Q Consensus       239 g~~~~~ip~E~~~~~~rG~Vsma~sG-----sqFFItL~d~p~Ldg~~TVFG~Vv~eGmdVldkI~~~~td~~~~~~i~v  313 (342)
                      +..++...++..+++++|+|||+++|     |||||++++.|+||++|||||+|+ +||+||++|++++++++.+     
T Consensus        68 ~~~~~~e~~~~~~~~~~G~lsma~~~~~s~~sqFfIt~~~~p~ld~~~tvFG~V~-~G~~vl~~I~~~~~~~~~~-----  141 (159)
T d2ok3a1          68 GKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVI-DGLETLDELEKLPVNEKTY-----  141 (159)
T ss_dssp             SSCBCCCCCTTCCSCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEE-ECHHHHHHHHTCCBCTTTC-----
T ss_pred             CCccccccccCCCCCCCeEEEEeeCCCCCcCcceEeeeccCcccccceEEEEecc-cchHHHHHHHcCcCCCCCC-----
Confidence            55555555555678899999999854     799999999999999999999999 9999999999999987642     


Q ss_pred             ccccCCeEEEEEecc
Q 019343          314 TVLKKPVPLRLRRLK  328 (342)
Q Consensus       314 ~v~~~PV~i~~~r~~  328 (342)
                       .|.+||.|+.+.+-
T Consensus       142 -~P~~~i~I~~v~i~  155 (159)
T d2ok3a1         142 -RPLNDVHIKDITIH  155 (159)
T ss_dssp             -CBSSCCBEEEEEEE
T ss_pred             -CcCCCcEEEEEEEE
Confidence             47788888766553
>d2fu0a1 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {Plasmodium falciparum [TaxId: 5833]} Back     information, alignment and structure
>d1xwna1 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2b71a1 b.62.1.1 (A:23-191) Cyclophilin-like protein PY00693 {Plasmodium yoelii [TaxId: 5861]} Back     information, alignment and structure
>d1w74a_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2a2na1 b.62.1.1 (A:483-646) Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zkca1 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v9ta_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1lopa_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2z6wa1 b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qoia_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]} Back     information, alignment and structure
>d2r99a1 b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2rmca_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus musculus), variant C [TaxId: 10090]} Back     information, alignment and structure
>d1xo7a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId: 5693]} Back     information, alignment and structure
>d1a33a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (Brugia malayi) [TaxId: 6279]} Back     information, alignment and structure
>d1z81a1 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId: 5861]} Back     information, alignment and structure
>d2igva1 b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 3 [TaxId: 6239]} Back     information, alignment and structure
>d1h0pa_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 5 [TaxId: 6239]} Back     information, alignment and structure
>d1qnga_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium falciparum [TaxId: 5833]} Back     information, alignment and structure
>d2cfea1 b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s 6 {Malassezia sympodialis [TaxId: 76777]} Back     information, alignment and structure
>d1ihga2 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2c3ba1 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Aspergillus fumigatus [TaxId: 5085]} Back     information, alignment and structure
>d1zx8a1 b.62.1.3 (A:1-124) Hypothetical protein TM1367 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure